Query 008313
Match_columns 570
No_of_seqs 672 out of 3815
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02964 phosphatidylserine de 100.0 9E-126 2E-130 1029.9 38.1 560 1-565 1-566 (644)
2 KOG2419 Phosphatidylserine dec 100.0 6E-100 1E-104 786.6 17.6 553 1-565 206-897 (975)
3 PRK00723 phosphatidylserine de 100.0 1.5E-60 3.2E-65 481.5 17.5 232 325-565 2-233 (297)
4 PTZ00403 phosphatidylserine de 100.0 1.4E-52 3.1E-57 428.1 16.2 190 370-565 63-260 (353)
5 PLN02938 phosphatidylserine de 100.0 1.7E-52 3.7E-57 434.6 15.3 210 347-565 77-331 (428)
6 PRK03140 phosphatidylserine de 100.0 5E-52 1.1E-56 413.4 16.4 190 370-565 16-205 (259)
7 PRK00044 psd phosphatidylserin 100.0 1.3E-51 2.7E-56 417.1 16.2 190 370-565 16-210 (288)
8 PRK03934 phosphatidylserine de 100.0 4.9E-50 1.1E-54 400.4 17.3 189 369-565 4-196 (265)
9 PRK09629 bifunctional thiosulf 100.0 9.3E-48 2E-52 424.8 16.0 190 370-565 339-533 (610)
10 TIGR00163 PS_decarb phosphatid 100.0 4.3E-46 9.3E-51 367.1 14.2 159 402-564 1-162 (238)
11 PF02666 PS_Dcarbxylase: Phosp 100.0 1.4E-40 3.1E-45 321.5 13.7 147 415-565 1-148 (202)
12 KOG2420 Phosphatidylserine dec 100.0 6.3E-39 1.4E-43 314.2 11.0 187 369-565 87-306 (382)
13 COG0688 Psd Phosphatidylserine 100.0 3.9E-38 8.4E-43 307.4 9.2 172 370-565 13-185 (239)
14 TIGR00164 PS_decarb_rel phosph 99.9 2.4E-23 5.2E-28 198.5 11.5 116 412-564 15-132 (189)
15 PRK05305 phosphatidylserine de 99.9 1E-21 2.2E-26 189.8 11.5 117 415-565 37-153 (206)
16 KOG1030 Predicted Ca2+-depende 99.6 3.6E-16 7.7E-21 141.9 8.7 89 51-140 3-97 (168)
17 cd04039 C2_PSD C2 domain prese 99.6 1.5E-14 3.2E-19 125.8 9.4 90 54-143 1-101 (108)
18 cd04016 C2_Tollip C2 domain pr 99.5 2.8E-14 6.1E-19 126.3 10.1 99 54-155 2-107 (121)
19 cd08379 C2D_MCTP_PRT_plant C2 99.5 1.1E-13 2.4E-18 123.4 8.2 99 55-156 1-114 (126)
20 cd08682 C2_Rab11-FIP_classI C2 99.5 2E-13 4.3E-18 122.2 8.4 100 56-155 1-111 (126)
21 cd08688 C2_KIAA0528-like C2 do 99.4 2.4E-13 5.1E-18 118.7 8.3 99 56-154 1-110 (110)
22 cd08677 C2A_Synaptotagmin-13 C 99.4 4.8E-13 1E-17 116.9 8.4 91 47-137 7-106 (118)
23 cd04041 C2A_fungal C2 domain f 99.4 6E-13 1.3E-17 116.3 9.0 86 54-139 1-99 (111)
24 KOG0027 Calmodulin and related 99.4 8E-13 1.7E-17 122.1 8.6 118 146-271 11-137 (151)
25 cd04038 C2_ArfGAP C2 domain pr 99.4 1.1E-12 2.4E-17 120.0 9.0 87 54-141 2-93 (145)
26 cd08375 C2_Intersectin C2 doma 99.4 1.3E-12 2.7E-17 118.5 9.2 86 54-139 15-106 (136)
27 cd08681 C2_fungal_Inn1p-like C 99.4 1.4E-12 3.1E-17 115.0 8.7 97 54-153 1-104 (118)
28 cd04042 C2A_MCTP_PRT C2 domain 99.4 1.6E-12 3.4E-17 115.5 8.9 99 55-156 1-106 (121)
29 cd04011 C2B_Ferlin C2 domain s 99.4 1.6E-12 3.4E-17 113.7 8.6 100 55-154 5-111 (111)
30 cd04032 C2_Perforin C2 domain 99.4 2E-12 4.3E-17 115.5 9.2 90 49-138 23-118 (127)
31 cd04024 C2A_Synaptotagmin-like 99.4 2.3E-12 5.1E-17 115.2 9.8 101 54-154 1-110 (128)
32 cd08376 C2B_MCTP_PRT C2 domain 99.4 2.3E-12 4.9E-17 113.4 8.5 98 55-154 1-104 (116)
33 COG5126 FRQ1 Ca2+-binding prot 99.3 2.5E-12 5.4E-17 117.6 8.6 124 138-270 14-143 (160)
34 cd08378 C2B_MCTP_PRT_plant C2 99.3 1.3E-12 2.8E-17 116.1 6.4 101 55-156 1-106 (121)
35 cd04019 C2C_MCTP_PRT_plant C2 99.3 3.9E-12 8.5E-17 117.2 9.6 101 55-155 1-110 (150)
36 cd08381 C2B_PI3K_class_II C2 d 99.3 3.2E-12 6.9E-17 113.7 8.4 88 53-140 12-112 (122)
37 cd08391 C2A_C2C_Synaptotagmin_ 99.3 3.3E-12 7.2E-17 113.1 8.5 102 54-159 1-114 (121)
38 cd04025 C2B_RasA1_RasA4 C2 dom 99.3 4.4E-12 9.6E-17 112.9 9.4 96 56-153 2-103 (123)
39 cd04050 C2B_Synaptotagmin-like 99.3 4.2E-12 9.1E-17 109.8 8.9 96 56-154 2-103 (105)
40 cd08395 C2C_Munc13 C2 domain t 99.3 7.7E-12 1.7E-16 110.5 9.1 94 56-151 2-110 (120)
41 cd04045 C2C_Tricalbin-like C2 99.3 8E-12 1.7E-16 110.8 9.3 99 54-156 1-106 (120)
42 cd04029 C2A_SLP-4_5 C2 domain 99.3 6E-12 1.3E-16 112.4 8.1 103 47-151 8-124 (125)
43 cd08377 C2C_MCTP_PRT C2 domain 99.3 5.4E-12 1.2E-16 111.5 7.1 100 54-158 1-106 (119)
44 cd04048 C2A_Copine C2 domain f 99.3 7.6E-12 1.6E-16 110.9 7.9 96 55-152 2-113 (120)
45 cd04028 C2B_RIM1alpha C2 domai 99.3 1.4E-11 2.9E-16 112.6 9.6 101 52-155 27-140 (146)
46 cd08393 C2A_SLP-1_2 C2 domain 99.3 7.4E-12 1.6E-16 111.9 7.7 101 49-151 10-124 (125)
47 cd04036 C2_cPLA2 C2 domain pre 99.3 9.5E-12 2.1E-16 110.1 8.2 100 56-159 2-110 (119)
48 cd04022 C2A_MCTP_PRT_plant C2 99.3 3.9E-12 8.5E-17 113.9 5.6 99 56-155 2-110 (127)
49 cd04044 C2A_Tricalbin-like C2 99.3 1.5E-11 3.2E-16 109.3 8.8 89 54-143 2-99 (124)
50 cd04018 C2C_Ferlin C2 domain t 99.3 1.5E-11 3.3E-16 113.1 8.4 89 68-156 34-128 (151)
51 cd08394 C2A_Munc13 C2 domain f 99.3 2.3E-11 5E-16 107.5 9.3 96 54-152 2-100 (127)
52 cd04010 C2B_RasA3 C2 domain se 99.3 1.7E-11 3.6E-16 112.5 8.6 98 56-155 2-124 (148)
53 cd08678 C2_C21orf25-like C2 do 99.3 1.9E-11 4.1E-16 109.3 8.6 96 56-154 1-102 (126)
54 cd08401 C2A_RasA2_RasA3 C2 dom 99.3 8.8E-12 1.9E-16 110.7 6.4 95 56-153 2-104 (121)
55 cd08392 C2A_SLP-3 C2 domain fi 99.2 2.1E-11 4.5E-16 109.3 8.6 103 49-151 10-127 (128)
56 cd08387 C2A_Synaptotagmin-8 C2 99.2 1.7E-11 3.6E-16 109.3 7.9 104 46-151 8-122 (124)
57 cd04037 C2E_Ferlin C2 domain f 99.2 2.6E-11 5.7E-16 108.1 8.6 84 55-138 1-92 (124)
58 cd08385 C2A_Synaptotagmin-1-5- 99.2 2.5E-11 5.5E-16 108.1 8.0 101 49-151 11-122 (124)
59 cd08382 C2_Smurf-like C2 domai 99.2 1.7E-11 3.7E-16 109.2 6.8 98 56-156 2-108 (123)
60 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.2 3.4E-11 7.3E-16 112.5 8.8 87 53-139 26-126 (162)
61 cd04021 C2_E3_ubiquitin_ligase 99.2 3.7E-11 8E-16 107.3 8.6 99 55-155 3-110 (125)
62 cd04054 C2A_Rasal1_RasA4 C2 do 99.2 2.5E-11 5.5E-16 107.7 7.3 99 56-156 2-107 (121)
63 cd08686 C2_ABR C2 domain in th 99.2 4.3E-11 9.4E-16 104.4 8.4 79 56-136 1-92 (118)
64 cd04046 C2_Calpain C2 domain p 99.2 6.5E-11 1.4E-15 105.9 9.4 82 54-137 3-90 (126)
65 cd04033 C2_NEDD4_NEDD4L C2 dom 99.2 2.7E-11 5.8E-16 109.3 6.9 108 56-164 2-126 (133)
66 cd08373 C2A_Ferlin C2 domain f 99.2 5E-11 1.1E-15 106.7 8.3 90 66-157 12-103 (127)
67 cd04009 C2B_Munc13-like C2 dom 99.2 5.2E-11 1.1E-15 107.6 8.3 88 52-139 14-118 (133)
68 cd04030 C2C_KIAA1228 C2 domain 99.2 5E-11 1.1E-15 106.5 7.8 101 49-151 11-126 (127)
69 cd04049 C2_putative_Elicitor-r 99.2 7.6E-11 1.6E-15 105.0 8.8 89 54-142 1-99 (124)
70 cd08388 C2A_Synaptotagmin-4-11 99.2 5.6E-11 1.2E-15 106.6 8.0 89 50-138 12-113 (128)
71 cd04027 C2B_Munc13 C2 domain s 99.2 3.5E-11 7.6E-16 107.8 6.6 98 55-157 2-116 (127)
72 cd04017 C2D_Ferlin C2 domain f 99.2 1E-10 2.2E-15 105.9 9.7 111 55-168 2-129 (135)
73 KOG0028 Ca2+-binding protein ( 99.2 9.5E-11 2.1E-15 104.9 9.1 117 146-270 36-157 (172)
74 KOG0696 Serine/threonine prote 99.2 1.8E-11 3.9E-16 124.8 4.6 98 54-154 180-289 (683)
75 cd04015 C2_plant_PLD C2 domain 99.2 1.2E-10 2.5E-15 108.5 9.4 86 68-157 57-143 (158)
76 cd04031 C2A_RIM1alpha C2 domai 99.2 1.1E-10 2.3E-15 104.1 8.6 90 48-137 10-113 (125)
77 cd04051 C2_SRC2_like C2 domain 99.2 8.3E-11 1.8E-15 104.9 7.8 101 56-156 2-117 (125)
78 cd08690 C2_Freud-1 C2 domain f 99.2 1.4E-10 3.1E-15 106.7 9.5 89 66-156 22-124 (155)
79 cd08685 C2_RGS-like C2 domain 99.1 8.8E-11 1.9E-15 103.9 7.7 96 53-150 11-118 (119)
80 COG5126 FRQ1 Ca2+-binding prot 99.1 4.2E-11 9E-16 109.6 5.5 94 146-243 59-156 (160)
81 cd04047 C2B_Copine C2 domain s 99.1 7.4E-11 1.6E-15 102.8 6.9 83 55-138 2-99 (110)
82 cd08680 C2_Kibra C2 domain fou 99.1 1.3E-10 2.9E-15 103.4 8.5 91 47-137 7-111 (124)
83 cd08675 C2B_RasGAP C2 domain s 99.1 1.2E-10 2.5E-15 105.9 8.0 100 56-157 1-124 (137)
84 cd08400 C2_Ras_p21A1 C2 domain 99.1 2.5E-10 5.5E-15 102.1 10.0 98 54-154 4-105 (126)
85 cd04043 C2_Munc13_fungal C2 do 99.1 2.2E-10 4.7E-15 102.3 9.2 98 55-152 2-109 (126)
86 cd08386 C2A_Synaptotagmin-7 C2 99.1 2.4E-10 5.3E-15 101.8 9.3 88 52-139 14-113 (125)
87 cd04052 C2B_Tricalbin-like C2 99.1 9.5E-11 2.1E-15 102.4 6.2 93 65-160 9-102 (111)
88 cd08404 C2B_Synaptotagmin-4 C2 99.1 1.6E-10 3.4E-15 104.9 7.7 99 52-154 13-124 (136)
89 cd04040 C2D_Tricalbin-like C2 99.1 2.6E-10 5.6E-15 100.1 8.9 96 56-153 1-103 (115)
90 cd08521 C2A_SLP C2 domain firs 99.1 2.1E-10 4.5E-15 101.9 8.1 91 48-138 8-112 (123)
91 cd08676 C2A_Munc13-like C2 dom 99.1 2.5E-10 5.4E-15 105.2 8.7 85 50-138 24-143 (153)
92 cd04014 C2_PKC_epsilon C2 doma 99.1 3.8E-10 8.1E-15 101.8 9.5 99 52-152 2-117 (132)
93 cd08384 C2B_Rabphilin_Doc2 C2 99.1 2.4E-10 5.2E-15 103.1 7.7 102 48-153 7-121 (133)
94 cd08406 C2B_Synaptotagmin-12 C 99.1 3E-10 6.4E-15 102.9 7.6 88 48-135 9-109 (136)
95 cd08691 C2_NEDL1-like C2 domai 99.1 4.7E-10 1E-14 101.6 8.7 87 55-143 2-110 (137)
96 cd08390 C2A_Synaptotagmin-15-1 99.1 4.6E-10 1E-14 99.7 8.5 95 47-141 7-113 (123)
97 KOG0027 Calmodulin and related 99.1 1.5E-10 3.3E-15 106.9 5.2 98 146-243 47-149 (151)
98 PLN03200 cellulose synthase-in 99.1 2.2E-10 4.8E-15 138.7 8.0 107 50-159 1976-2089(2102)
99 cd08389 C2A_Synaptotagmin-14_1 99.0 5.6E-10 1.2E-14 99.6 8.0 102 47-151 9-122 (124)
100 cd04026 C2_PKC_alpha_gamma C2 99.0 5.9E-10 1.3E-14 100.3 8.0 99 54-155 13-123 (131)
101 cd08405 C2B_Synaptotagmin-7 C2 99.0 4.9E-10 1.1E-14 101.6 7.2 103 48-154 9-124 (136)
102 cd08407 C2B_Synaptotagmin-13 C 99.0 6.6E-10 1.4E-14 100.7 7.8 90 47-136 8-112 (138)
103 cd08402 C2B_Synaptotagmin-1 C2 99.0 6.8E-10 1.5E-14 100.6 7.5 101 49-153 10-123 (136)
104 cd08410 C2B_Synaptotagmin-17 C 99.0 7.9E-10 1.7E-14 100.1 7.7 84 51-134 11-107 (135)
105 cd08403 C2B_Synaptotagmin-3-5- 99.0 1E-09 2.2E-14 99.2 8.1 86 50-135 10-108 (134)
106 cd04035 C2A_Rabphilin_Doc2 C2 98.9 2.5E-09 5.3E-14 95.1 8.1 93 48-141 9-115 (123)
107 cd00276 C2B_Synaptotagmin C2 d 98.9 1.7E-09 3.7E-14 97.4 6.7 100 52-155 12-124 (134)
108 PF13499 EF-hand_7: EF-hand do 98.9 2.5E-09 5.3E-14 84.1 6.8 61 181-241 2-66 (66)
109 cd08408 C2B_Synaptotagmin-14_1 98.9 2.3E-09 5E-14 97.4 7.1 90 47-136 8-111 (138)
110 PTZ00183 centrin; Provisional 98.9 7.1E-09 1.5E-13 95.8 9.3 116 146-269 20-140 (158)
111 cd05022 S-100A13 S-100A13: S-1 98.9 6.2E-09 1.3E-13 86.8 7.6 67 178-244 7-76 (89)
112 PLN03008 Phospholipase D delta 98.9 3.2E-09 7E-14 118.6 7.2 87 66-156 74-161 (868)
113 PTZ00183 centrin; Provisional 98.8 3.6E-09 7.8E-14 97.8 5.9 113 129-244 31-155 (158)
114 cd04013 C2_SynGAP_like C2 doma 98.8 1.2E-08 2.7E-13 93.0 9.2 103 52-158 9-118 (146)
115 KOG0028 Ca2+-binding protein ( 98.8 4.5E-09 9.8E-14 94.3 6.1 94 146-243 72-170 (172)
116 PTZ00184 calmodulin; Provision 98.8 5.3E-09 1.1E-13 95.4 6.1 95 146-244 14-113 (149)
117 cd08409 C2B_Synaptotagmin-15 C 98.8 7.6E-09 1.6E-13 93.9 6.7 88 49-136 10-109 (137)
118 KOG0034 Ca2+/calmodulin-depend 98.8 1E-08 2.2E-13 97.2 6.4 118 128-245 47-177 (187)
119 cd08692 C2B_Tac2-N C2 domain s 98.8 1.5E-08 3.2E-13 90.9 7.1 90 47-136 7-109 (135)
120 PTZ00184 calmodulin; Provision 98.8 2.8E-08 6E-13 90.6 8.6 114 129-242 25-147 (149)
121 KOG0030 Myosin essential light 98.7 3.2E-08 7E-13 86.8 7.7 115 141-263 8-132 (152)
122 cd00275 C2_PLC_like C2 domain 98.7 4.4E-08 9.6E-13 87.4 8.7 97 55-157 3-114 (128)
123 PF00168 C2: C2 domain; Inter 98.7 2.7E-08 5.9E-13 81.4 6.7 76 56-131 1-85 (85)
124 cd05027 S-100B S-100B: S-100B 98.7 5.3E-08 1.2E-12 81.2 8.0 67 178-244 7-80 (88)
125 cd08383 C2A_RasGAP C2 domain ( 98.7 3.7E-08 8E-13 86.5 7.2 96 56-156 2-103 (117)
126 KOG0044 Ca2+ sensor (EF-Hand s 98.6 4.2E-08 9.2E-13 93.0 6.4 96 146-243 67-175 (193)
127 cd05026 S-100Z S-100Z: S-100Z 98.6 1.2E-07 2.7E-12 79.9 8.5 67 178-244 9-82 (93)
128 KOG0031 Myosin regulatory ligh 98.6 8E-08 1.7E-12 85.7 7.4 106 137-250 25-136 (171)
129 KOG0044 Ca2+ sensor (EF-Hand s 98.6 1.5E-07 3.2E-12 89.3 8.3 123 146-271 29-163 (193)
130 cd05029 S-100A6 S-100A6: S-100 98.6 2.2E-07 4.8E-12 77.5 8.1 69 176-244 7-80 (88)
131 cd05031 S-100A10_like S-100A10 98.6 2.1E-07 4.6E-12 78.7 7.7 66 179-244 8-80 (94)
132 smart00027 EH Eps15 homology d 98.6 3.1E-07 6.8E-12 78.0 8.6 69 174-244 5-73 (96)
133 KOG1028 Ca2+-dependent phospho 98.5 1.3E-07 2.9E-12 101.2 7.5 85 54-138 167-262 (421)
134 PF13833 EF-hand_8: EF-hand do 98.5 2.3E-07 5.1E-12 69.8 6.7 52 192-243 1-53 (54)
135 cd05025 S-100A1 S-100A1: S-100 98.5 3.3E-07 7.3E-12 77.1 7.8 66 179-244 9-81 (92)
136 COG5038 Ca2+-dependent lipid-b 98.5 1.9E-07 4.2E-12 106.3 7.6 88 53-140 1039-1133(1227)
137 cd00052 EH Eps15 homology doma 98.5 3.6E-07 7.8E-12 71.6 6.8 61 182-244 2-62 (67)
138 cd00213 S-100 S-100: S-100 dom 98.5 5.3E-07 1.1E-11 75.2 7.4 68 177-244 6-80 (88)
139 KOG0037 Ca2+-binding protein, 98.4 6.7E-07 1.4E-11 84.8 8.5 63 181-243 126-188 (221)
140 smart00239 C2 Protein kinase C 98.4 8.4E-07 1.8E-11 74.3 8.3 84 56-139 2-94 (101)
141 cd00051 EFh EF-hand, calcium b 98.4 6.5E-07 1.4E-11 67.9 6.7 61 181-241 2-62 (63)
142 cd05023 S-100A11 S-100A11: S-1 98.4 1E-06 2.2E-11 73.6 8.2 68 177-244 7-81 (89)
143 KOG0037 Ca2+-binding protein, 98.4 8.9E-07 1.9E-11 83.9 7.4 110 146-265 60-170 (221)
144 cd00030 C2 C2 domain. The C2 d 98.3 1.7E-06 3.6E-11 72.1 7.9 82 57-138 2-90 (102)
145 KOG1031 Predicted Ca2+-depende 98.3 5.1E-07 1.1E-11 95.2 4.7 102 54-155 3-122 (1169)
146 COG5038 Ca2+-dependent lipid-b 98.3 1.2E-06 2.7E-11 99.9 7.5 87 54-141 436-531 (1227)
147 KOG0031 Myosin regulatory ligh 98.3 3.6E-06 7.8E-11 75.3 8.8 67 173-243 26-92 (171)
148 cd00252 SPARC_EC SPARC_EC; ext 98.3 2E-06 4.4E-11 75.3 7.0 60 178-241 47-106 (116)
149 cd08374 C2F_Ferlin C2 domain s 98.3 2.6E-06 5.6E-11 76.5 7.7 84 56-139 2-123 (133)
150 KOG0034 Ca2+/calmodulin-depend 98.3 1.2E-06 2.6E-11 83.1 5.7 122 146-271 36-163 (187)
151 KOG1327 Copine [Signal transdu 98.3 1.4E-06 3E-11 93.3 6.7 123 27-156 111-250 (529)
152 KOG0036 Predicted mitochondria 98.2 3.7E-06 8E-11 86.4 8.8 94 146-245 54-148 (463)
153 KOG0036 Predicted mitochondria 98.2 2E-06 4.4E-11 88.3 6.9 113 146-270 17-133 (463)
154 KOG0046 Ca2+-binding actin-bun 98.2 5.6E-06 1.2E-10 87.2 10.2 134 172-322 12-149 (627)
155 KOG1011 Neurotransmitter relea 98.1 3.1E-06 6.6E-11 90.5 5.9 82 54-137 295-394 (1283)
156 PLN02223 phosphoinositide phos 98.1 8E-06 1.7E-10 88.3 8.4 98 54-156 409-522 (537)
157 PF00036 EF-hand_1: EF hand; 98.1 3.3E-06 7.2E-11 54.8 3.1 28 216-243 1-28 (29)
158 PLN02952 phosphoinositide phos 98.1 1E-05 2.2E-10 89.3 8.7 98 54-156 470-584 (599)
159 cd05030 calgranulins Calgranul 98.0 1.5E-05 3.2E-10 66.6 7.0 66 179-244 8-80 (88)
160 KOG4223 Reticulocalbin, calume 98.0 2.8E-06 6.2E-11 85.0 2.7 125 115-239 163-301 (325)
161 PF14658 EF-hand_9: EF-hand do 98.0 2E-05 4.2E-10 61.2 6.7 62 183-244 2-65 (66)
162 KOG0038 Ca2+-binding kinase in 98.0 6.3E-06 1.4E-10 72.9 3.8 100 172-271 64-165 (189)
163 KOG1028 Ca2+-dependent phospho 98.0 1.6E-05 3.6E-10 85.3 7.5 86 50-135 294-392 (421)
164 KOG0038 Ca2+-binding kinase in 98.0 1.7E-05 3.7E-10 70.2 6.2 113 130-245 54-179 (189)
165 KOG4223 Reticulocalbin, calume 97.9 1.1E-05 2.5E-10 80.8 5.6 119 146-271 80-216 (325)
166 KOG0041 Predicted Ca2+-binding 97.9 3.4E-05 7.3E-10 72.0 7.1 70 175-244 95-164 (244)
167 PF00036 EF-hand_1: EF hand; 97.8 1.7E-05 3.6E-10 51.6 3.3 28 181-208 2-29 (29)
168 PLN02964 phosphatidylserine de 97.8 5.5E-05 1.2E-09 84.4 9.0 89 173-269 137-229 (644)
169 PLN02230 phosphoinositide phos 97.8 4.7E-05 1E-09 84.0 7.5 99 54-157 469-584 (598)
170 PF13499 EF-hand_7: EF-hand do 97.8 2.4E-05 5.3E-10 61.1 3.9 60 146-205 3-66 (66)
171 PLN02222 phosphoinositide phos 97.7 7.9E-05 1.7E-09 82.1 8.6 98 54-156 452-566 (581)
172 KOG0169 Phosphoinositide-speci 97.7 5.2E-05 1.1E-09 83.8 6.9 98 55-157 617-730 (746)
173 KOG1328 Synaptic vesicle prote 97.7 1.5E-05 3.2E-10 86.7 2.0 83 55-137 948-1047(1103)
174 PLN02270 phospholipase D alpha 97.7 9.2E-05 2E-09 83.5 8.1 84 68-156 46-132 (808)
175 PLN02228 Phosphoinositide phos 97.6 0.00015 3.2E-09 79.8 7.6 99 54-157 431-547 (567)
176 KOG2059 Ras GTPase-activating 97.6 7.7E-05 1.7E-09 81.4 5.0 94 55-152 6-106 (800)
177 cd08689 C2_fungal_Pkc1p C2 dom 97.5 0.00058 1.3E-08 58.1 8.1 60 56-120 1-70 (109)
178 KOG1264 Phospholipase C [Lipid 97.4 0.00033 7.3E-09 77.3 8.0 83 55-137 1066-1160(1267)
179 PF13405 EF-hand_6: EF-hand do 97.4 0.00016 3.4E-09 47.7 3.1 26 217-242 2-27 (31)
180 PRK12309 transaldolase/EF-hand 97.4 0.00033 7.3E-09 74.2 7.2 52 179-243 334-385 (391)
181 PF14788 EF-hand_10: EF hand; 97.4 0.00051 1.1E-08 50.3 5.6 50 195-244 1-50 (51)
182 cd05024 S-100A10 S-100A10: A s 97.4 0.00096 2.1E-08 55.5 8.0 65 179-244 8-77 (91)
183 PF14658 EF-hand_9: EF-hand do 97.3 0.00039 8.5E-09 54.0 4.9 58 147-207 2-64 (66)
184 KOG0030 Myosin essential light 97.3 0.00069 1.5E-08 60.0 6.9 71 177-247 9-81 (152)
185 PF13405 EF-hand_6: EF-hand do 97.3 0.00027 5.9E-09 46.6 3.3 29 181-209 2-31 (31)
186 KOG0377 Protein serine/threoni 97.3 0.00051 1.1E-08 71.3 6.6 66 178-243 546-615 (631)
187 PF12763 EF-hand_4: Cytoskelet 97.3 0.0009 2E-08 57.5 6.9 67 174-243 5-71 (104)
188 PF13202 EF-hand_5: EF hand; P 97.2 0.00027 5.9E-09 44.2 2.6 23 218-240 2-24 (25)
189 cd05022 S-100A13 S-100A13: S-1 97.2 0.00031 6.8E-09 58.6 3.3 59 146-208 11-76 (89)
190 PF13202 EF-hand_5: EF hand; P 97.1 0.00051 1.1E-08 42.9 2.7 25 181-205 1-25 (25)
191 cd05027 S-100B S-100B: S-100B 97.0 0.00065 1.4E-08 56.6 3.9 59 146-208 11-80 (88)
192 KOG1326 Membrane-associated pr 97.0 0.00055 1.2E-08 77.5 4.0 87 51-137 610-704 (1105)
193 PF12588 PSDC: Phophatidylseri 97.0 0.00051 1.1E-08 62.0 2.8 50 341-390 69-123 (141)
194 smart00027 EH Eps15 homology d 96.9 0.00042 9E-09 58.7 2.0 56 146-207 13-72 (96)
195 PF13833 EF-hand_8: EF-hand do 96.9 0.0013 2.9E-08 49.1 4.5 44 161-207 10-53 (54)
196 cd00052 EH Eps15 homology doma 96.9 0.001 2.3E-08 51.7 3.8 55 147-207 3-61 (67)
197 cd05026 S-100Z S-100Z: S-100Z 96.9 0.00094 2E-08 56.3 3.6 60 146-208 13-82 (93)
198 KOG1328 Synaptic vesicle prote 96.7 0.0011 2.3E-08 72.7 2.9 56 83-138 180-271 (1103)
199 cd05025 S-100A1 S-100A1: S-100 96.6 0.0024 5.2E-08 53.6 3.9 61 146-209 12-82 (92)
200 cd05031 S-100A10_like S-100A10 96.6 0.0016 3.5E-08 54.8 2.7 61 146-209 11-81 (94)
201 cd05029 S-100A6 S-100A6: S-100 96.4 0.0033 7.2E-08 52.4 3.8 59 146-208 13-80 (88)
202 PLN02352 phospholipase D epsil 96.4 0.0087 1.9E-07 67.8 7.8 94 54-157 10-116 (758)
203 KOG2562 Protein phosphatase 2 96.2 0.0051 1.1E-07 64.7 4.8 93 149-244 284-380 (493)
204 PF10591 SPARC_Ca_bdg: Secrete 96.2 0.0016 3.4E-08 57.0 0.8 60 178-239 53-112 (113)
205 cd00252 SPARC_EC SPARC_EC; ext 96.2 0.0039 8.5E-08 54.7 3.3 56 146-205 51-106 (116)
206 cd00213 S-100 S-100: S-100 dom 96.1 0.0053 1.1E-07 50.9 3.2 60 146-208 11-80 (88)
207 KOG4666 Predicted phosphate ac 96.1 0.0087 1.9E-07 60.2 5.1 98 146-246 262-362 (412)
208 cd00051 EFh EF-hand, calcium b 95.9 0.012 2.7E-07 43.8 4.4 55 147-205 4-62 (63)
209 KOG2643 Ca2+ binding protein, 95.9 0.0036 7.8E-08 65.3 1.6 96 147-244 322-454 (489)
210 smart00054 EFh EF-hand, calciu 95.5 0.015 3.3E-07 36.0 3.0 26 217-242 2-27 (29)
211 cd05030 calgranulins Calgranul 95.3 0.015 3.3E-07 48.4 3.1 60 146-208 11-80 (88)
212 KOG0040 Ca2+-binding actin-bun 95.3 0.018 3.9E-07 67.9 4.6 95 146-241 2256-2359(2399)
213 cd05023 S-100A11 S-100A11: S-1 95.3 0.022 4.7E-07 47.5 3.9 60 146-208 12-81 (89)
214 KOG2059 Ras GTPase-activating 95.2 0.016 3.5E-07 63.8 3.7 85 66-152 148-252 (800)
215 KOG4065 Uncharacterized conser 94.5 0.092 2E-06 45.1 5.6 58 183-240 71-142 (144)
216 smart00054 EFh EF-hand, calciu 94.3 0.049 1.1E-06 33.5 2.9 27 181-207 2-28 (29)
217 KOG2643 Ca2+ binding protein, 94.2 0.025 5.5E-07 59.2 2.2 53 188-242 208-260 (489)
218 KOG0041 Predicted Ca2+-binding 94.2 0.055 1.2E-06 51.0 4.2 98 138-239 93-199 (244)
219 KOG1326 Membrane-associated pr 94.1 0.031 6.6E-07 63.9 2.5 68 68-135 226-302 (1105)
220 KOG0040 Ca2+-binding actin-bun 94.0 0.14 3E-06 60.8 7.7 72 173-244 2247-2325(2399)
221 KOG0377 Protein serine/threoni 93.4 0.36 7.8E-06 50.8 8.7 30 217-246 549-578 (631)
222 KOG4251 Calcium binding protei 93.0 0.1 2.2E-06 50.6 3.7 66 178-243 100-168 (362)
223 PF12763 EF-hand_4: Cytoskelet 92.0 0.12 2.6E-06 44.4 2.5 54 146-206 13-70 (104)
224 PF09279 EF-hand_like: Phospho 91.9 0.24 5.3E-06 40.4 4.3 62 181-243 2-69 (83)
225 KOG0751 Mitochondrial aspartat 91.9 0.45 9.7E-06 50.8 7.1 59 184-244 79-137 (694)
226 KOG3555 Ca2+-binding proteogly 91.7 0.24 5.1E-06 50.5 4.7 60 181-244 252-311 (434)
227 cd05024 S-100A10 S-100A10: A s 91.6 0.18 3.9E-06 42.1 3.1 30 179-208 48-77 (91)
228 KOG1013 Synaptic vesicle prote 91.5 0.35 7.7E-06 49.2 5.7 80 54-135 233-327 (362)
229 KOG1013 Synaptic vesicle prote 91.1 0.052 1.1E-06 55.0 -0.6 83 55-137 94-190 (362)
230 PRK12309 transaldolase/EF-hand 90.6 0.23 4.9E-06 53.0 3.6 48 146-207 337-385 (391)
231 KOG4251 Calcium binding protei 90.0 0.55 1.2E-05 45.7 5.2 57 185-241 242-307 (362)
232 KOG0905 Phosphoinositide 3-kin 89.8 0.2 4.3E-06 58.5 2.5 96 54-151 1524-1633(1639)
233 KOG4666 Predicted phosphate ac 89.8 0.54 1.2E-05 47.7 5.2 65 179-243 259-324 (412)
234 KOG0751 Mitochondrial aspartat 89.1 0.61 1.3E-05 49.8 5.2 64 181-244 110-208 (694)
235 PF14788 EF-hand_10: EF hand; 89.1 0.8 1.7E-05 33.8 4.3 43 162-208 8-50 (51)
236 KOG1955 Ral-GTPase effector RA 88.6 0.95 2.1E-05 48.3 6.2 71 172-244 224-294 (737)
237 PF05042 Caleosin: Caleosin re 88.2 2.1 4.5E-05 40.0 7.5 31 214-244 95-125 (174)
238 KOG4578 Uncharacterized conser 87.9 0.47 1E-05 48.1 3.3 69 179-247 333-402 (421)
239 PF15627 CEP76-C2: CEP76 C2 do 86.1 3.3 7.1E-05 38.2 7.5 90 54-143 9-121 (156)
240 KOG2562 Protein phosphatase 2 85.2 1 2.3E-05 47.9 4.3 90 146-239 314-420 (493)
241 KOG0169 Phosphoinositide-speci 84.3 2.2 4.8E-05 48.2 6.6 92 146-245 139-234 (746)
242 KOG1029 Endocytic adaptor prot 83.4 1.2 2.6E-05 50.1 4.0 60 181-242 197-256 (1118)
243 PF10591 SPARC_Ca_bdg: Secrete 82.6 0.8 1.7E-05 40.0 1.9 53 148-203 59-112 (113)
244 PRK09439 PTS system glucose-sp 81.6 2.5 5.5E-05 39.6 4.9 52 437-511 21-72 (169)
245 cd08684 C2A_Tac2-N C2 domain f 81.4 0.7 1.5E-05 38.2 1.0 61 75-137 29-92 (103)
246 KOG1265 Phospholipase C [Lipid 80.3 3.2 6.8E-05 47.6 5.9 80 52-137 701-794 (1189)
247 KOG1327 Copine [Signal transdu 79.9 1.3 2.9E-05 48.3 2.8 62 79-142 40-107 (529)
248 KOG3866 DNA-binding protein of 79.1 3.5 7.5E-05 41.7 5.2 61 181-241 246-322 (442)
249 KOG0042 Glycerol-3-phosphate d 76.7 4 8.6E-05 44.8 5.2 73 174-246 588-660 (680)
250 cd00210 PTS_IIA_glc PTS_IIA, P 75.6 3.9 8.4E-05 36.3 4.0 50 439-511 1-50 (124)
251 KOG1707 Predicted Ras related/ 75.4 9.3 0.0002 42.3 7.6 30 217-246 317-346 (625)
252 KOG4347 GTPase-activating prot 73.9 4.1 8.9E-05 45.3 4.5 59 178-237 554-612 (671)
253 PF05517 p25-alpha: p25-alpha 70.8 12 0.00026 34.5 6.3 58 189-246 12-72 (154)
254 KOG4065 Uncharacterized conser 70.3 7.6 0.00017 33.6 4.4 27 178-204 116-142 (144)
255 KOG1011 Neurotransmitter relea 69.6 15 0.00032 40.9 7.4 88 55-142 1126-1228(1283)
256 TIGR00830 PTBA PTS system, glu 68.8 6.9 0.00015 34.6 4.0 50 439-511 1-50 (121)
257 KOG0046 Ca2+-binding actin-bun 68.2 4 8.7E-05 44.2 2.8 62 146-209 22-87 (627)
258 KOG2243 Ca2+ release channel ( 67.1 8.4 0.00018 46.1 5.1 60 183-243 4061-4120(5019)
259 PF00358 PTS_EIIA_1: phosphoen 65.3 7 0.00015 35.1 3.4 52 437-511 3-54 (132)
260 PF14429 DOCK-C2: C2 domain in 64.4 15 0.00032 34.9 5.7 57 80-136 59-120 (184)
261 KOG2060 Rab3 effector RIM1 and 63.3 6.8 0.00015 40.9 3.3 97 54-154 269-380 (405)
262 PF12416 DUF3668: Cep120 prote 63.2 39 0.00084 35.4 8.9 99 56-156 2-116 (340)
263 COG0688 Psd Phosphatidylserine 59.3 6.9 0.00015 38.9 2.5 36 416-454 64-99 (239)
264 PF09069 EF-hand_3: EF-hand; 57.1 55 0.0012 27.3 7.0 62 180-244 4-76 (90)
265 PF05042 Caleosin: Caleosin re 56.3 30 0.00065 32.4 5.9 60 181-241 98-164 (174)
266 KOG1955 Ral-GTPase effector RA 52.4 9.6 0.00021 41.0 2.3 59 146-207 234-293 (737)
267 KOG3837 Uncharacterized conser 52.4 17 0.00037 38.5 4.0 101 54-156 367-490 (523)
268 cd08697 C2_Dock-D C2 domains f 51.9 61 0.0013 30.9 7.4 64 56-120 28-98 (185)
269 cd08695 C2_Dock-B C2 domains f 51.6 46 0.001 31.8 6.6 37 80-116 53-91 (189)
270 cd08679 C2_DOCK180_related C2 49.4 64 0.0014 30.3 7.3 56 80-136 53-115 (178)
271 cd08694 C2_Dock-A C2 domains f 49.1 87 0.0019 30.1 8.0 38 80-117 53-92 (196)
272 KOG0035 Ca2+-binding actin-bun 47.7 35 0.00076 40.0 5.9 73 174-246 742-819 (890)
273 cd08696 C2_Dock-C C2 domains f 46.8 95 0.0021 29.4 7.8 41 80-120 54-96 (179)
274 KOG4578 Uncharacterized conser 46.0 19 0.0004 37.0 3.0 54 148-207 338-398 (421)
275 PF12174 RST: RCD1-SRO-TAF4 (R 45.8 22 0.00048 28.1 2.9 47 195-244 8-54 (70)
276 cd08397 C2_PI3K_class_III C2 d 44.3 58 0.0013 30.2 5.9 55 83-137 50-107 (159)
277 PRK10255 PTS system N-acetyl g 44.0 35 0.00076 39.0 5.3 53 436-511 498-550 (648)
278 PF08726 EFhand_Ca_insen: Ca2+ 41.7 19 0.00042 28.4 2.0 29 212-241 3-31 (69)
279 PLN02952 phosphoinositide phos 41.5 54 0.0012 37.1 6.1 54 192-246 13-68 (599)
280 KOG2419 Phosphatidylserine dec 41.4 4.8 0.0001 44.6 -1.9 160 66-243 408-578 (975)
281 PRK05889 putative acetyl-CoA c 40.7 1.2E+02 0.0026 23.6 6.5 25 495-519 38-62 (71)
282 cd08398 C2_PI3K_class_I_alpha 40.3 1.2E+02 0.0025 28.1 7.3 83 54-137 8-106 (158)
283 cd08683 C2_C2cd3 C2 domain fou 38.4 52 0.0011 29.5 4.3 70 70-139 34-132 (143)
284 KOG0998 Synaptic vesicle prote 35.6 15 0.00033 43.3 0.8 65 178-244 282-346 (847)
285 PF09279 EF-hand_like: Phospho 34.1 49 0.0011 26.6 3.4 30 216-246 1-30 (83)
286 cd06850 biotinyl_domain The bi 34.0 1.2E+02 0.0026 22.5 5.5 23 496-518 36-58 (67)
287 COG2190 NagE Phosphotransferas 32.8 72 0.0016 29.5 4.5 52 436-510 5-56 (156)
288 KOG4004 Matricellular protein 31.9 24 0.00052 33.6 1.3 55 185-241 193-248 (259)
289 KOG1029 Endocytic adaptor prot 30.0 1.5E+02 0.0032 34.3 7.0 68 173-243 10-77 (1118)
290 PRK06549 acetyl-CoA carboxylas 27.5 2.6E+02 0.0057 24.9 7.1 61 435-518 60-120 (130)
291 cd08687 C2_PKN-like C2 domain 26.6 3E+02 0.0065 23.2 6.6 62 69-136 9-71 (98)
292 PRK09824 PTS system beta-gluco 26.2 65 0.0014 36.8 3.7 50 438-511 480-530 (627)
293 PF14513 DAG_kinase_N: Diacylg 25.4 1.2E+02 0.0026 27.5 4.5 62 194-261 6-75 (138)
294 PRK05641 putative acetyl-CoA c 24.8 4.4E+02 0.0096 24.2 8.3 61 435-518 83-143 (153)
295 KOG3555 Ca2+-binding proteogly 24.8 57 0.0012 33.9 2.5 58 148-209 255-312 (434)
296 cd08693 C2_PI3K_class_I_beta_d 24.4 2.3E+02 0.005 26.5 6.5 67 54-120 8-87 (173)
297 PF09068 EF-hand_2: EF hand; 24.1 2.4E+02 0.0052 25.0 6.2 63 181-243 43-125 (127)
298 TIGR01995 PTS-II-ABC-beta PTS 23.9 87 0.0019 35.7 4.2 52 437-511 463-514 (610)
299 cd08399 C2_PI3K_class_I_gamma 23.8 3.1E+02 0.0068 25.9 7.2 66 54-119 10-88 (178)
300 PF08672 APC2: Anaphase promot 23.1 2.1E+02 0.0045 21.9 4.8 43 202-246 3-47 (60)
301 COG4297 Uncharacterized protei 22.2 33 0.00071 30.8 0.3 25 483-507 44-68 (163)
302 PRK08225 acetyl-CoA carboxylas 21.4 3.8E+02 0.0082 20.5 6.7 58 438-518 3-60 (70)
303 cd04012 C2A_PI3K_class_II C2 d 21.1 3.1E+02 0.0067 25.5 6.7 86 51-136 5-118 (171)
304 TIGR03077 not_gcvH glycine cle 21.1 1.1E+02 0.0024 26.5 3.3 38 438-492 61-100 (110)
305 TIGR03573 WbuX N-acetyl sugar 21.0 1.6E+02 0.0035 30.9 5.2 10 88-97 135-144 (343)
306 PF00404 Dockerin_1: Dockerin 20.8 80 0.0017 18.8 1.6 13 190-202 2-14 (21)
307 PF00792 PI3K_C2: Phosphoinosi 20.3 1.4E+02 0.003 26.8 4.0 55 83-137 23-85 (142)
308 PF13375 RnfC_N: RnfC Barrel s 20.2 77 0.0017 27.0 2.2 16 498-513 68-83 (101)
309 PF08414 NADPH_Ox: Respiratory 20.1 2.9E+02 0.0062 23.5 5.4 59 181-244 32-93 (100)
No 1
>PLN02964 phosphatidylserine decarboxylase
Probab=100.00 E-value=9.5e-126 Score=1029.88 Aligned_cols=560 Identities=74% Similarity=1.186 Sum_probs=526.1
Q ss_pred CCCCCCCCCcccchhhhhhccccccccccc----cCCCCCCCCCCcccccccccceeeEEEEEEEeeecCCCCCeEEEEE
Q 008313 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRR----SRGNGSNSGSHHHNRVLNEEDFAGIALLTLISAEMKFKDKWLACVS 76 (570)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~l~v~v~~~~l~~~~dp~~~v~ 76 (570)
|||+|||.+. +|||++.++||+.++.+.+ +.|+.+|+. ..+++++++++|++.+++++|+|.++|+++++++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (644)
T PLN02964 1 MGNGNSREAK-ESRRSKLRQKLQKFRIRRRHLRCSRGSSSGSV---SQRAVSAEDFSGIALLTLVGAEMKFKDKWLACVS 76 (644)
T ss_pred CCCCCCCccc-cCCcchHHHHHHHHHHHHHhhhhccCCCCccc---cccceecccccCeEEEEeehhhhccCCcEEEEEE
Confidence 9999999755 7999999999998553332 333444443 3788999999999999999999999999999999
Q ss_pred eCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCceeeeeeccccCCccc-cchhhccCCC
Q 008313 77 LGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLDPS 155 (570)
Q Consensus 77 ~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~~-~~~F~l~D~~ 155 (570)
+|.++|||.+.++|+||+||+...+.++.++.+..+|.|||++++++++++|.+++++.++..+ +..+ .+.|.++|++
T Consensus 77 ~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k-qi~elkeaF~lfD~d 155 (644)
T PLN02964 77 FGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQ-EPESACESFDLLDPS 155 (644)
T ss_pred ecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHH-HHHHHHHHHHHHCCC
Confidence 9999999999999999999999999998888888999999999999999999999999996654 3344 8899999999
Q ss_pred CchhHHHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHH
Q 008313 156 SSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVD 235 (570)
Q Consensus 156 ~~GkIl~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~d 235 (570)
++|++++.++.+++...|++.+..+++++|+.+|.|++|.|+++||..++..++...++++++++|+.+|+|++|+|+++
T Consensus 156 gdG~iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~d 235 (644)
T PLN02964 156 SSNKVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTID 235 (644)
T ss_pred CCCcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHH
Confidence 99999999999986347888887889999999999999999999999999998888889999999999999999999999
Q ss_pred HHHHHHHhhhccCcccCCchhHHHHhhhccccCchhhhccccCcCCcceeeccCCcChhhhHHHHHHHhccccccccccc
Q 008313 236 ELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDV 315 (570)
Q Consensus 236 Ef~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~dl~~~a~c~~~~~~~~~~~~g~~~~~~a~~~w~~k~l~~~~~~~y~~ 315 (570)
||.++|..+.+....++.||+|.+.+++.++.++|+|+|+|++|++++++|++||+|++||+++||+|+++|++||+|++
T Consensus 236 EL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~~c~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~~~~~y~~ 315 (644)
T PLN02964 236 ELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHMTLCFDEGTGNQVMTGGFLTDKQASYGWMFKLSEWAHLSTYDV 315 (644)
T ss_pred HHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHHHHhhcccccceeeccCccchhHHhHHHHHHHHHHHhcccccc
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCce-EEEEEecCCCceEEEEeechhhhhhhhhccccccccccchhHHHHHHHHHHHHHHhhcCcccccchHHHHH
Q 008313 316 GLNSGSRA-HILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVN 394 (570)
Q Consensus 316 ~~~~~~~~-~~~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~~s~~~i~~f~~ 394 (570)
|++.|+++ +|+|+||.||++++|++++++.++|+|||++++|+.+|+++++++|+.+|+++|+++|||+|+..|++||+
T Consensus 316 g~~~~~~~~~i~~~dR~t~~~~~E~v~~~~~~~~~~lY~~~~G~~~l~~~~~~~l~~~S~~~G~~~dsp~S~~~I~~Fi~ 395 (644)
T PLN02964 316 GLNTGSSASHILVFDRKSKRLVEELIDSKIVLSMRAIYQSKIGLRLMDQGAKEILQRLSEKQGKKMNSVESAQDIPKFLE 395 (644)
T ss_pred ccccCCCcCceEEEECCCCcEEEEEeeeeehhhHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhHcCChhhHHHHHHHHH
Confidence 99988888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCccccCCCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCC
Q 008313 395 FFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN 474 (570)
Q Consensus 395 ~~~~~i~~~e~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~ 474 (570)
.|+++|||+|+++|+++|+||||||+|+|||++|||+.++++.++||||||++++|+.|++...|||||++|||.+|||+
T Consensus 396 ~~~~~id~~E~~~p~~~y~SfNdFFtRkLKp~aRPi~~~~~~~~iVSPaDg~v~~~~~i~~~~~~~IKG~~Ysl~~LLg~ 475 (644)
T PLN02964 396 FFKDQINMDEVKYPLEHFKTFNEFFIRELKPGARPIACMDNDDVAVCAADCRLMAFQSVDDSTRFWIKGRKFSIKGLLGK 475 (644)
T ss_pred HhhcCcCHHHhhcCcccCCCHHHcceecCCCCCCCCCCCCCCCEEEECCCceeEEeeeecCCcEEEECCCcccHHHHcCC
Confidence 98778999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEE
Q 008313 475 DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHY 554 (570)
Q Consensus 475 ~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v 554 (570)
++++++|.||+++++||||+||||||+||+|+|.+.++|||.||||||+|++..++++|++|+|++++|+|+++|.|++|
T Consensus 476 ~~~a~~f~gG~~~i~rLsP~DYHR~HsPv~G~v~~~~~I~G~l~sVnp~al~~~~~~~f~~NeR~v~~iet~~~G~V~~v 555 (644)
T PLN02964 476 KVHSDAFLDGSLVIFRLAPQDYHRFHVPVSGVIEKFVDVPGSLYTVNPIAVNSKYCNVFTENKRAVCIISTAEFGKVAFV 555 (644)
T ss_pred chhHHhcCCCEEEEEEECCceeceeecCCCCEEEEEEEECCeeEecChhhhcccccchhhcCeeEEEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999976567999999999999999999999999
Q ss_pred hhhhccccccc
Q 008313 555 SRSHSHSHSRF 565 (570)
Q Consensus 555 ~VGa~~v~~~~ 565 (570)
+|||++||+|.
T Consensus 556 ~VGA~~VgsI~ 566 (644)
T PLN02964 556 AIGATMVGSIT 566 (644)
T ss_pred EEeeeEeeEEE
Confidence 99999999985
No 2
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=5.7e-100 Score=786.63 Aligned_cols=553 Identities=57% Similarity=0.893 Sum_probs=457.6
Q ss_pred CCCCCCCCCcccchhhhhhccccccccccc--cC--------CCCCCCCCCccccccc--------------ccceeeEE
Q 008313 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRR--SR--------GNGSNSGSHHHNRVLN--------------EEDFAGIA 56 (570)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~--------------~~~~~g~l 56 (570)
|||+|+--....+||.+-+++.++-+.+.+ .+ +..+|..+ .++.+ ++++.|++
T Consensus 206 M~n~S~s~~~~E~rr~e~~~~~~sf~~err~sip~~~~~~sis~~~gl~~---~~s~s~~~~~e~~~~~~~~~dd~~gi~ 282 (975)
T KOG2419|consen 206 MGNGSNSVEGKESRRSEDRNKSQSFRTERRYSIPNDTIFDSISEVVGLND---QRSVSLNDFEEADHPNVHDADDFTGIA 282 (975)
T ss_pred hcCcccccchhhhhhhhhhccccceeecccccCCcccccccccccccccc---cccccccccccccCccccccchhhhhH
Confidence 899865554447999999998888332221 11 11122211 12223 67788999
Q ss_pred EEEEEeeec----------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEec-C--CCceEEEEEEecccCCc
Q 008313 57 LLTLISAEM----------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-N--GPHVARISVFETNRLSK 123 (570)
Q Consensus 57 ~v~v~~~~l----------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~-~--~~~~l~~~v~D~D~~~~ 123 (570)
.+++++|.+ +++++|+++.+++++.+||++..++++|+||| . .+|. + ..+.+.+.+.+.+....
T Consensus 283 ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe--~-~~E~~~Fqsn~~l~~kiv~~~~~~l 359 (975)
T KOG2419|consen 283 LLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNE--D-EREDSDFQSNRYLGNKIVGYCELDL 359 (975)
T ss_pred HHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhcccccccccc--c-ccccccchhhHHHhhhccccccccc
Confidence 999999985 58999999999999999999999999999999 4 2221 1 12336666666666666
Q ss_pred ccccCCceee--eeeccccCCccccchhhccCCCCch-----------------h---HHHHHhhhcCCCCChhhHHHHH
Q 008313 124 SNLEGYCEVD--LLEFLTKDSDADSEVFDLLDPSSSN-----------------K---IVGKISLSCSVEDPIETEKSFA 181 (570)
Q Consensus 124 ~D~iG~~~i~--l~ells~~~~~~~~~F~l~D~~~~G-----------------k---Il~e~l~~l~~~~~t~~e~~~l 181 (570)
+|-++.+-+. ...++..+.......|.+.++..+. . +++..+.......+.+.+.-+.
T Consensus 360 ndS~A~f~vq~~~sn~~~~~pE~~~~sfnl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~ 439 (975)
T KOG2419|consen 360 NDSYANFVVQRAKSNFFISEPESTCKSFNLLDPASSNLPALRNRLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFA 439 (975)
T ss_pred cchhhhhhhhhhhccccccCccccceEEEeecCCcccchhhhhccCccccccCchhHhhhhhHHhhhhhhccccchhhhh
Confidence 6543332111 0000100111013455555553222 0 1555555555566666666677
Q ss_pred HHHhccccCCCCCceeHHHHHHHHHHhCCcchHHH---------HHHHHHHhcCCCC-----------------------
Q 008313 182 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANK---------KEELFKAADKNGD----------------------- 229 (570)
Q Consensus 182 ~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~e---------i~~~F~~~D~d~d----------------------- 229 (570)
.+++..+|.+.++..++.+|.++..+++..+...+ ...+|..+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 89999999999999999999998877765443333 5678899999999
Q ss_pred CCcCHHHHHHHHHh-------------hhcc----------------------------------CcccCCchhHHHHhh
Q 008313 230 GVVSVDELAALLAL-------------QQEK----------------------------------EPLMNCCPVCGETLE 262 (570)
Q Consensus 230 G~Is~dEf~~~l~~-------------l~e~----------------------------------~~~~~~~~~~~~~l~ 262 (570)
|.++.||+..++.. ..+. ...++.||+|.+.+.
T Consensus 520 ~~vtVDe~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs~~~~~~~~~i~nCP~C~~~~~ 599 (975)
T KOG2419|consen 520 GVVTVDELVALLALDIIQVMLYLERLTQQEQEPIINHFNKSAWAGQSITRSQLVEGLQSWRKSTNFKRIWNCPVCGEALQ 599 (975)
T ss_pred CeeEHHHHHHHHHHHHHHHHHHHHHhhhccccchhhcccCCCCCccccchhhhhhhhhcccccccceeecCCccHHhhhc
Confidence 99999999988872 1111 224569999999976
Q ss_pred hc-cccCchhhhccccCcCCcceeeccCCcChhhhHHHHHHHhccccccccccccCCCCCceEEEEEecCCCceEEEEee
Q 008313 263 VA-DMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVGLNSGSRAHILVFDRRTKRLVEELID 341 (570)
Q Consensus 263 ~~-d~~~dl~~~a~c~~~~~~~~~~~~g~~~~~~a~~~w~~k~l~~~~~~~y~~~~~~~~~~~~~~~~r~~~~~~~e~~~ 341 (570)
.. +..+.++|+|+|++|++.|++|+++|++..||+++||+|+++|++||+|++| .++|+|+|+||+||+++||+++
T Consensus 600 ~~~~~~~a~iH~a~C~~~~~~~~~m~~syvs~~qAs~rWfsK~~~k~~ygty~vG---Ss~a~ilVqdR~Tg~ivEEki~ 676 (975)
T KOG2419|consen 600 PTRDKLNAMIHMALCFDEGTGNQTMTGSYVSDRQASYRWFSKLSEKTHYGTYDVG---SSAANILVQDRKTGRIVEEKID 676 (975)
T ss_pred cchhhhhhheeeeeeeccccCceeeeccccchhhHHHHHHHHHHHHhhccceecC---CCcceEEEEecccchHHHHhhc
Confidence 54 7888889999999999999999999999999999999999999999999999 4677999999999999999999
Q ss_pred chhhhhhhhhccccccccccchhHHHHHHHHHHHHHHhhcCcccccchHHHHHHhccCCCccccCCCCCCCCChhhhhcc
Q 008313 342 VKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIR 421 (570)
Q Consensus 342 ~~~~~~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~~s~~~i~~f~~~~~~~i~~~e~~~~~~~y~s~n~FF~R 421 (570)
.+++++||+||++..|+.+++..++.+|+.+|.++|++|||++|++.|++||++| .+||+|...|+.+|+|||+||+|
T Consensus 677 a~V~lgmR~iY~gk~~~r~~~~k~k~iL~~Ls~kQGkK~dS~~Sak~I~pFi~Ff--~lnm~ev~~p~~~FKTFNEFFyR 754 (975)
T KOG2419|consen 677 AKVVLGMRAIYQGKIGLRLMDQKAKEILQTLSEKQGKKMDSVESAKQIPPFIEFF--KLNMAEVKYPLKHFKTFNEFFYR 754 (975)
T ss_pred ceeeeehhhhhcccccchhhhhhHHHHHHHHHHHhccccCchhhhhhcchHHhhh--hcchhhhcCccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 69999999999999999999999
Q ss_pred cCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCccccc
Q 008313 422 ELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHL 501 (570)
Q Consensus 422 ~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~ 501 (570)
+||||+||++.+++++++|||||||+++|+.|++.++|||||..|||+.|||...-+++|.+|+.+|+||+|+||||||+
T Consensus 755 kLKPGsRp~a~~nn~dIlvspADsR~~af~~Ie~st~~WIKGrkFsik~Llg~n~n~~~F~dgSi~IfRLAPQDYHRFHs 834 (975)
T KOG2419|consen 755 KLKPGSRPIACMNNKDILVSPADSRLMAFQSIEDSTRFWIKGRKFSIKGLLGYNVNPEAFLDGSIVIFRLAPQDYHRFHS 834 (975)
T ss_pred hcCCCCcccCCCCCCceeecccccceEeeeeecccceEEEeccEEehhHhhCCCCCchhccCCcEEEEEeccchhhhccC
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 502 PVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 502 P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
||+|.|.+..+|.|.||+|||+|+++ |.+||.||.|+++.|++.+||+|++|+||||||||+.
T Consensus 835 PvnG~Igk~v~v~G~yYTVNPmAvrS-yldVFgEN~RviipIds~eFGKv~~VaiGAmMVGSi~ 897 (975)
T KOG2419|consen 835 PVNGVIGKFVYVSGSYYTVNPMAVRS-YLDVFGENKRVIIPIDSAEFGKVAFVAIGAMMVGSIL 897 (975)
T ss_pred cccccccCceEecceEEEechHHHHh-hhhhhcCceEEEEEecchhhccEEEEeecceeeeeEE
Confidence 99999999999999999999999986 7999999999999999999999999999999999984
No 3
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.5e-60 Score=481.47 Aligned_cols=232 Identities=38% Similarity=0.619 Sum_probs=218.3
Q ss_pred EEEEecCCCceEEEEeechhhhhhhhhccccccccccchhHHHHHHHHHHHHHHhhcCcccccchHHHHHHhccCCCccc
Q 008313 325 ILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKDQINLAD 404 (570)
Q Consensus 325 ~~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~~s~~~i~~f~~~~~~~i~~~e 404 (570)
|+|+||.||++++|+++++. .++|+|++++|+.+|..++. .+.+|+++|+++++|.|+..|++|++.| +|||+|
T Consensus 2 ~~~~~r~~~~~~~e~~~~~~--~~~~~y~~~~gr~~l~~l~~--~~~~S~~~G~~~~~~~s~~~I~~f~~~~--~id~~e 75 (297)
T PRK00723 2 IKYYNRKTKKYEIEKVAGEK--YLKWLYSSPIGKNLLELLIK--KKIFSKIYGWYCDSRLSRKKIKPFVNDF--NIDMSE 75 (297)
T ss_pred cEEEECCCCceEEEeccHHH--HHHHHhcCHHHHHHHHHhcC--cHHHHHHHHHHhCCcchHHHHHHHHHHh--CCCHHH
Confidence 78999999999999988876 48999999999998876543 1469999999999999999999999998 899999
Q ss_pred cCCCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCC
Q 008313 405 VKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG 484 (570)
Q Consensus 405 ~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g 484 (570)
++.|+++|+||||||+|+|||++|||+. ++.++||||||+|++++.|+++..+||||++|||++||++++++++|.+|
T Consensus 76 ~~~~~~~y~sfn~FFtR~lk~~~Rpi~~--~~~~ivSPaDg~v~~~~~i~~~~~~~vKG~~Ysl~~LLg~~~~a~~f~~G 153 (297)
T PRK00723 76 SEKPLSDFKSFNDFFTRKLKPEARPIDQ--GENILISPGDGRLLAYENIDLNSLFQVKGKTYSLKELLGDPELAKKYAGG 153 (297)
T ss_pred hhcChhhCCCHHHceeecCCCCCCCCCC--CCCEEEECCCcEEEEEEEEcCCCeEEEcCceeeHHHHcCChhHHHhcCCC
Confidence 9999999999999999999999999975 57889999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhcccccc
Q 008313 485 TMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSR 564 (570)
Q Consensus 485 ~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~ 564 (570)
+++++||||.||||||+|++|+|.+.++|||.||+|||.++... +++|++|||++++++|+++|.|++|+|||++||+|
T Consensus 154 ~~~~~yLsp~DYHR~HsPv~G~v~~~~~i~G~l~~V~p~~l~~~-~~~f~~NeR~v~~i~t~~~G~v~~v~VGa~~VgsI 232 (297)
T PRK00723 154 TCLILRLCPTDYHRFHFPDSGICEETRKIKGHYYSVNPIALKKI-FELFCENKREWSIFKSENFGDILYVEVGATCVGSI 232 (297)
T ss_pred EEEEEEECCCeEEEEEccCCcEEEEEEEECCeEeecChHHhhcc-ccccccceeEEEEEEcCCCCEEEEEEEhheEeeEE
Confidence 99999999999999999999999999999999999999998754 79999999999999998899999999999999998
Q ss_pred c
Q 008313 565 F 565 (570)
Q Consensus 565 ~ 565 (570)
.
T Consensus 233 ~ 233 (297)
T PRK00723 233 I 233 (297)
T ss_pred E
Confidence 4
No 4
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.4e-52 Score=428.12 Aligned_cols=190 Identities=26% Similarity=0.384 Sum_probs=176.5
Q ss_pred HHHHHHHHHhhcCccccc----chHHHHHHhccCCCccccCCCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCc
Q 008313 370 KSISEKQGRKMNSVESSK----EIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 445 (570)
Q Consensus 370 ~~~s~~~g~~~~s~~s~~----~i~~f~~~~~~~i~~~e~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg 445 (570)
+.+|+++|++++++.++. .|++|++.| +|||+|++.|+++|+||||||+|+|||++|||+++ ++.++||||||
T Consensus 63 ~~~Srl~G~~a~~~~p~~lr~~ii~~fik~y--~Inl~E~~~~~~~Y~SfndFFtR~lk~~~RPi~~~-~~~~iVSPaDg 139 (353)
T PTZ00403 63 RTRSRITGSIFNIEIPNTYRLPIYNFLIKYM--GINKEEIKYPIESYKSIGDFFSRYIREETRPIGDV-SDYSIVSPCDS 139 (353)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--CCCHHHhhCChhcCCCHHHceeecccCCCCCCCCC-CCCeEEeCCCc
Confidence 459999999999988764 789999998 89999999889999999999999999999999764 46789999999
Q ss_pred eeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCC----eEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccC
Q 008313 446 RLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG----TMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVN 521 (570)
Q Consensus 446 ~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g----~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~ 521 (570)
+|++++.|+++..+||||++|||++|||++ +++.|.+| +++++||||.||||||+|++|+|.+.++|||+|||||
T Consensus 140 ~v~~~g~I~~~~~~qvKG~~Ysl~~LLg~~-~a~~~~~g~~~~~~~v~yLsP~DYHR~HsP~~g~v~~~~~IpG~L~pVn 218 (353)
T PTZ00403 140 ELTDYGELSSEYLENVKGVKFNVNTFLGSD-MQKKYNDGSTKFFYAIFYLSPKKYHHFHAPFNFKYKIRRHISGELFPVF 218 (353)
T ss_pred eeEeeeEecCCCEEEeCCCcccHHHHhCch-hHHhhcCCCCcEEEEEEEECcceeeEEeccCceEEEEEEEeCCeEeeeC
Confidence 999999999999999999999999999964 78899998 6999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 522 PIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 522 p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
|.+++. .+++|++|||+|+.++++ +|.|++|+|||++||+|.
T Consensus 219 p~~l~~-~~~lf~~NERvv~~~~~~-~G~~~~v~VGA~~VGsI~ 260 (353)
T PTZ00403 219 QGMFKI-INNLFNINERVILSGEWK-GGNVYYAAISAYNVGNIK 260 (353)
T ss_pred HHHHhc-CcccccceEEEEEEeecC-CceEEEEEEeeEEEEEEE
Confidence 999975 489999999999988875 999999999999999995
No 5
>PLN02938 phosphatidylserine decarboxylase
Probab=100.00 E-value=1.7e-52 Score=434.60 Aligned_cols=210 Identities=26% Similarity=0.373 Sum_probs=188.6
Q ss_pred hhhhhccccccccccchhHHHHHHHHHHHHHHhhcCc---ccccch-HHHHHHhccCCCccccCCCCCCCCChhhhhccc
Q 008313 347 SMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSV---ESSKEI-PKFVNFFKDQINLADVKYPLEHFKTFNEFFIRE 422 (570)
Q Consensus 347 ~~~~~y~~~~g~~~l~~~~~~~~~~~s~~~g~~~~s~---~s~~~i-~~f~~~~~~~i~~~e~~~~~~~y~s~n~FF~R~ 422 (570)
+++++|+++++..++..+. ++.+|++||++.+++ +++..| +.|++.| +|||+|++.|+++|+||||||+|+
T Consensus 77 g~~~~~~~~~~~~ll~lLP---~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f--~inl~E~~~p~~~Y~SfndFFtRk 151 (428)
T PLN02938 77 GIEPEFSPDTKASFLRLLP---LRSISRLWGSLTSVELPVWMRPYVYKAWARAF--HSNLEEAALPLEEYASLREFFVRS 151 (428)
T ss_pred CcccccCCHHHHHHHHHcc---HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--CcCHHHhhcchhhCCCHHHhheec
Confidence 3578999998887777665 466999999999998 566655 8999998 899999999999999999999999
Q ss_pred CCCCCccCCCCCCCceeeecCCceeeeeeeccC--CceEEEcCCccchhhhcCCCcc-----------------------
Q 008313 423 LKPGARPIDCMEREEVAVCAADSRLMAFKSVED--SLRFWIKGQKFSIQGLLGNDIC----------------------- 477 (570)
Q Consensus 423 lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~--~~~~~iKg~~ysl~~ll~~~~~----------------------- 477 (570)
|||++|||+. ++.++||||||+|++++.|++ +..+||||++|||++|||++..
T Consensus 152 LKpgaRPid~--d~~~iVSPaDG~v~~~g~I~~~~~~~~qVKG~~YSL~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (428)
T PLN02938 152 LKEGARPIDP--DPNCLVSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEEKEEETLKDKSSKS 229 (428)
T ss_pred cCCCCCcCCC--CCCeEEeccCCceEEeeeecCCCceEEEecCCcccHHHHcCCCcccccccccccchhhccccccccch
Confidence 9999999984 678999999999999999975 4789999999999999996543
Q ss_pred ----------------cCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEE
Q 008313 478 ----------------SNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVS 541 (570)
Q Consensus 478 ----------------~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~ 541 (570)
++.+.||+++++||||.||||||+|++|+|.+.+||||+||||||.+++. ++++|++|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~a~~~~g~~~~ViYLsP~DYHR~HsP~dg~v~~~rhipG~L~sVnp~~~~~-i~~LF~~NERvVl 308 (428)
T PLN02938 230 WLRVSLASPKLRDPVSASPMKGLFYCVIYLGPGDYHRIHSPSDWNIEVRRHFSGRLFPVNERATRT-IRNLYVENERVVL 308 (428)
T ss_pred hhhhhhccccccccccccccCCcEEEEEEeCccccceEeecCCcEEEEEEEcCCcccccCHHHHhh-CCCccccceEEEE
Confidence 35688999999999999999999999999999999999999999999875 4899999999998
Q ss_pred EEeeCCeeeEEEEhhhhccccccc
Q 008313 542 IISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 542 ~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
..++ ++|.|++|+|||++||||.
T Consensus 309 ~g~w-~~G~~a~v~VGAtnVGsI~ 331 (428)
T PLN02938 309 EGEW-QEGFMAMAAVGATNIGSIE 331 (428)
T ss_pred Eeec-CCceEEEEEEeeeEEEEEE
Confidence 8886 5999999999999999986
No 6
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=5e-52 Score=413.40 Aligned_cols=190 Identities=27% Similarity=0.425 Sum_probs=180.0
Q ss_pred HHHHHHHHHhhcCcccccchHHHHHHhccCCCccccCCCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCceeee
Q 008313 370 KSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMA 449 (570)
Q Consensus 370 ~~~s~~~g~~~~s~~s~~~i~~f~~~~~~~i~~~e~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~ 449 (570)
+.+|+++|+++++|.|+..|++|++.| +|||+|++.|+++|+||||||+|+|||++|||+. ++.++||||||++.+
T Consensus 16 ~~~s~~~g~~~~~~~s~~~i~~f~~~~--~i~~~e~~~~~~~y~sfn~FF~R~lk~~~Rpi~~--~~~~vvSPaDg~v~~ 91 (259)
T PRK03140 16 RFTSYLLRKFAQSRLSSILIPSYAKVY--QINQDEMEKGLKEYRTLHELFTRKLKEGKRPIDT--DASSIVSPVDGVFAD 91 (259)
T ss_pred HHHHHHHHHHhCCcccHHHHHHHHHHh--CCChHHhccChhcCCCHHHhceecCCCCCCCCCC--CCCEEEeCCCcEEEE
Confidence 348999999999999999999999998 8999999999999999999999999999999975 578899999999999
Q ss_pred eeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhhhcccC
Q 008313 450 FKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKY 529 (570)
Q Consensus 450 ~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~ 529 (570)
+++|+++..+||||++|||.+||+++.++++|.||+++++||||.||||||+|++|+|.+.++++|.||||||.++...
T Consensus 92 ~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~i~Lsp~DYHr~h~Pv~G~v~~~~~i~G~l~~V~~~~~~~~- 170 (259)
T PRK03140 92 VGPIEDDKTFDVKGKRYSIAEMLGNEERAQRYAGGTYMVLYLSPSHYHRIHSPISGTVTEQFVLGRKSYPVNALGLEYG- 170 (259)
T ss_pred EeecCCCCEEEECCceeeHHHhcCChhHHhhhcCCeEEEEEECccceEEEeccCCcEEEEEEECCCceeccCHHHhhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 530 CNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 530 ~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
+++|++|||.++.+++ ++|.|++|+|||++||+|.
T Consensus 171 ~~~~~~NeR~v~~i~~-~~G~v~~v~Vga~~Vg~I~ 205 (259)
T PRK03140 171 KRPLSKNYRSVTEVNS-DGEHMALVKVGAMFVNSIE 205 (259)
T ss_pred CccccccceEEEEEEe-CCceEEEEEEeeEEeeEEE
Confidence 6899999999999966 4899999999999999985
No 7
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=100.00 E-value=1.3e-51 Score=417.07 Aligned_cols=190 Identities=32% Similarity=0.595 Sum_probs=179.4
Q ss_pred HHHHHHHHHhhcCc---ccccchHHHHHHhccCCCccccCCC-CCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCc
Q 008313 370 KSISEKQGRKMNSV---ESSKEIPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 445 (570)
Q Consensus 370 ~~~s~~~g~~~~s~---~s~~~i~~f~~~~~~~i~~~e~~~~-~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg 445 (570)
+.+|+++|++++++ .|+..|++|++.| +|||+|+++| +++|+||||||+|+|||++|||+. +++++||||||
T Consensus 16 ~~~Sr~~g~~~~~~~~~~~~~~i~~f~~~~--~i~~~E~~~~~~~~y~s~~~FF~R~lk~~~Rpi~~--~~~~ivSPaDG 91 (288)
T PRK00044 16 HLLTRLAGWLASSRAGWLTTAVIRLFIKKY--KVDMSEAQKPDPAAYKTFNDFFTRALKDGARPIDE--DPNALVSPADG 91 (288)
T ss_pred HHHHHHHHHHHcCCCccchHHHHHHHHHHh--CCCHHHHccCChhhCCCHHHhceecccCCCCCCCC--CCCEEEeCCCc
Confidence 45899999999999 8999999999998 8999999865 899999999999999999999985 57889999999
Q ss_pred eeeeeeeccCCceEEEcCCccchhhhcC-CCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhh
Q 008313 446 RLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 524 (570)
Q Consensus 446 ~~~~~~~i~~~~~~~iKg~~ysl~~ll~-~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~ 524 (570)
+|+++++|+++..+||||++|||++||+ ++.++++|.||+++++||||.||||||+|++|+|.+.+||||.||+|||.+
T Consensus 92 ~v~~~~~i~~~~~~~vKG~~Ysl~~lL~~~~~~~~~~~~G~~i~iyLsp~DYHr~HsPv~G~v~~~~~i~G~~~~v~~~~ 171 (288)
T PRK00044 92 AISQLGPIEDGQIFQAKGHSYSLEALLGGDAALADPFRNGSFATIYLSPRDYHRVHMPCDGTLREMIYVPGDLFSVNPLT 171 (288)
T ss_pred eEEeEEeecCCCEEEECCceeeHHHHcCCChHHHHhcCCCEEEEEEECcceeeEEeccCCcEEEEEEEeCCcccccCHHH
Confidence 9999999999999999999999999998 677899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 525 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 525 ~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
++. ++++|++|||+++.++|+ +|.|++|+|||++||||.
T Consensus 172 ~~~-~~~lf~~NeR~v~~i~t~-~G~v~~v~VGA~~VGsI~ 210 (288)
T PRK00044 172 ARN-VPNLFARNERVVCLFDTE-FGPMAQVLVGATIVGSIE 210 (288)
T ss_pred hcc-CCCccceeeEEEEEEECC-CCcEEEEEEeeEeecceE
Confidence 864 489999999999999997 899999999999999874
No 8
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=4.9e-50 Score=400.42 Aligned_cols=189 Identities=28% Similarity=0.382 Sum_probs=173.7
Q ss_pred HHHHHHHHHHhhcCccccc----chHHHHHHhccCCCccccCCCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCC
Q 008313 369 LKSISEKQGRKMNSVESSK----EIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAAD 444 (570)
Q Consensus 369 ~~~~s~~~g~~~~s~~s~~----~i~~f~~~~~~~i~~~e~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaD 444 (570)
++.+|+++|++++++.|+. .|++|++.| +|||+|++ ++++|+||||||+|+|||+ |||+. ++.++|||||
T Consensus 4 ~~~~S~~~g~~~~~~~~~~~~~~~i~~f~~~~--~i~~~e~~-~~~~y~sfn~FF~R~lk~~-Rpi~~--~~~~ivSPaD 77 (265)
T PRK03934 4 SNALSRIFGKFAGYKFPKFIQKFINASYVKIF--KIDMSEFK-PPENYKSLNALFTRSLKKP-REFDE--DPNIFISPCD 77 (265)
T ss_pred hHHHHHHHHHHhcCCCCccchHHHHHHHHHHH--CCCHHHhc-CcccCCCHHHhccccCCCC-CCCCC--CCCEEEECCC
Confidence 4569999999999997654 678999998 89999997 6899999999999999985 99964 6788999999
Q ss_pred ceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhh
Q 008313 445 SRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 524 (570)
Q Consensus 445 g~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~ 524 (570)
|+|.+++.|+++..+||||++|||++||+++. +++|.+|+++++||||.||||||+|++|+|.+.+||||.||||||.+
T Consensus 78 G~v~~~~~i~~~~~~~vKg~~y~l~~lL~~~~-~~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG~~~~vn~~~ 156 (265)
T PRK03934 78 SLITECGSLEEDKALQIKGMEYSIEELLGESN-SELVNGFDYINFYLSPKDYHRYHAPCDLEILEARYIPGKLYPVNLPS 156 (265)
T ss_pred cEEEEEEEECCCCEEEECCccccHHHHcCCcc-hhhcCCcEEEEEEECcceEEEEeccCCcEEEEEEEcCCeeeccCHHH
Confidence 99999999999999999999999999999874 58999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 525 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 525 ~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
+... .++|++|||+++.++|+..|.|++|+|||++||+|.
T Consensus 157 ~~~~-~~lf~~NeR~v~~~et~~g~~v~~v~VgA~~Vg~I~ 196 (265)
T PRK03934 157 LEKN-KNLFVKNERVVLKCKDKKGKRLYFVFVGALNVGKMR 196 (265)
T ss_pred Hhhc-CccccceeEEEEEEEcCCCCEEEEEEEeeEEeeEEE
Confidence 8644 789999999999999985558999999999999986
No 9
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=9.3e-48 Score=424.77 Aligned_cols=190 Identities=27% Similarity=0.468 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhcCcc---cccchHHHHHHhccCCCccccC-CCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCc
Q 008313 370 KSISEKQGRKMNSVE---SSKEIPKFVNFFKDQINLADVK-YPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 445 (570)
Q Consensus 370 ~~~s~~~g~~~~s~~---s~~~i~~f~~~~~~~i~~~e~~-~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg 445 (570)
+.+|+++|++.+++. ++..|++|++.| +|||+|++ +++++|+||||||+|+|||++|||+. +++++||||||
T Consensus 339 ~~~S~~~g~~a~~~~~~~~~~~i~~fi~~y--~i~l~E~~~~~~~~y~sfn~FF~R~lk~~~Rpi~~--~~~~ivSPaDg 414 (610)
T PRK09629 339 HLLSRLAGCVAECRVRWFKNAFTAWFARRY--QVDMSQALVEDLTSYEHFNAFFTRALKADARPLDT--TPGAILSPADG 414 (610)
T ss_pred HHHHHHHHHHHhCccHhhHHHHHHHHHHHh--CCCHHHhhccCcccCCCHHHhcccccCCCCCCCCC--CCCeEEecCcc
Confidence 458999999988874 777799999998 89999987 56899999999999999999999975 57889999999
Q ss_pred eeeeeeeccCCceEEEcCCccchhhhcC-CCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhh
Q 008313 446 RLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 524 (570)
Q Consensus 446 ~~~~~~~i~~~~~~~iKg~~ysl~~ll~-~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~ 524 (570)
+|++++.|+++..+||||+.|||++||+ ++.++++|.||+++++||||.||||||+|++|+|.+.+||||+||+|||.+
T Consensus 415 ~v~~~g~i~~~~~~~vKG~~Ysl~eLL~~~~~~~~~~~~G~~~~iyLsP~DYHR~H~Pv~G~v~~~~~ipG~l~sV~~~~ 494 (610)
T PRK09629 415 AISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTT 494 (610)
T ss_pred ceeeeccccCCcEEEECCCcccHHHHhCCCHHHHhhcCCCeEEEEEECCCeeEEEeecCCcEEEEEEEECCeEEeccHHH
Confidence 9999999999999999999999999998 778899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 525 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 525 ~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
++. .+++|++|||++++++|+ +|.|++|+|||++||||.
T Consensus 495 ~~~-~~~lf~~NeR~v~~i~t~-~G~~~~v~VGA~~VgsI~ 533 (610)
T PRK09629 495 AEN-VPELFARNERVVCLFDTE-RGPMAVVLVGAMIVASVE 533 (610)
T ss_pred hhc-cCccchhceeEEEEEEeC-CCeEEEEEeceEeeeeEE
Confidence 864 489999999999999996 899999999999999984
No 10
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=100.00 E-value=4.3e-46 Score=367.08 Aligned_cols=159 Identities=32% Similarity=0.564 Sum_probs=149.2
Q ss_pred ccccCC-CCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCC-cccC
Q 008313 402 LADVKY-PLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND-ICSN 479 (570)
Q Consensus 402 ~~e~~~-~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~-~~~~ 479 (570)
|+|+++ ++++|+||||||+|+|||++|||+. ++.++||||||+|+.++.|++...+||||++|||.+||+++ .+++
T Consensus 1 ~~e~~~~~~~~y~s~n~FF~R~lk~~~Rpi~~--~~~~ivSPaDG~v~~~~~i~~~~~~~vKG~~ysl~~lL~~~~~~~~ 78 (238)
T TIGR00163 1 LDEAEKPDLADYRSLNEFFIRPLKLERRPVDK--EPNALVSPADGVISEVGIINPNQILQVKGMDYSLEELLGEKNPLSP 78 (238)
T ss_pred CchhccCCcccCCCHHHheeecCCCCCCCCCC--CCCEEEECCCceeEEEEEecCCcEEEEcCCcccHHHHcCCChhHHH
Confidence 578875 4899999999999999999999975 57889999999999999999999999999999999999865 7899
Q ss_pred CCCCCe-EEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhh
Q 008313 480 SFLNGT-MVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSH 558 (570)
Q Consensus 480 ~f~~g~-~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa 558 (570)
+|.||. ++++||||.||||||+|++|+|.+.++|||+||+|||.++... +++|++|||+++.++|+ +|.|++|+|||
T Consensus 79 ~f~~G~~~i~iyLsp~DYHr~hsPv~G~v~~~~~ipG~~~~v~~~~~~~~-~~lf~~NeR~v~~i~~~-~G~v~~v~VGA 156 (238)
T TIGR00163 79 YFRNGGFFVVTYLSPRDYHRFHSPCDCRLRKMRYFPGDLFSVNPLGLQNV-PNLFVRNERVILVFDTE-FGNMLMIPVGA 156 (238)
T ss_pred hccCCeEEEEEEECccceeEEeccCCcEEEEEEEcCccEeccCHHHHhcC-CCcceeeeEEEEEEEeC-CceEEEEEEee
Confidence 999998 8899999999999999999999999999999999999998644 88999999999999985 99999999999
Q ss_pred cccccc
Q 008313 559 SHSHSR 564 (570)
Q Consensus 559 ~~v~~~ 564 (570)
++||+|
T Consensus 157 ~~Vg~I 162 (238)
T TIGR00163 157 TNVGSI 162 (238)
T ss_pred eEeeEE
Confidence 999999
No 11
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=100.00 E-value=1.4e-40 Score=321.46 Aligned_cols=147 Identities=39% Similarity=0.609 Sum_probs=139.5
Q ss_pred hhhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCC-CcccCCCCCCeEEEEEeCC
Q 008313 415 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAP 493 (570)
Q Consensus 415 ~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~-~~~~~~f~~g~~~~~~Lsp 493 (570)
||+||+|+|||++|||+.+ +++++|||||+++++++|+++..+||||++|++.+||++ .++++.|.+|+++++||||
T Consensus 1 f~~FF~r~~r~~~R~i~~~--~~~ivSPaDG~v~~~~~i~~~~~~~iKg~~y~l~~ll~~~~~~~~~~~~g~~i~i~Lsp 78 (202)
T PF02666_consen 1 FNDFFTRFFRDPARPIPDD--PDAIVSPADGKVLVIGEIEEDSLFQIKGQPYSLRELLGDPSPLAEPFQGGTFIVIYLSP 78 (202)
T ss_pred ChhHeehhcCCCCCCCCCC--CCEEEeCcCcEEEeeEEECCCceEEEecCcCCHHHHhCccccceeccCCceEEEEEcCC
Confidence 8999999999999999874 569999999999999999999999999999999999998 7889999999999999999
Q ss_pred CCCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 494 QDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 494 ~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
.||||||+|++|+|.+.++|||.+|+|+|.++... +++|++|||++++++++ +|.|++++|||++||+|.
T Consensus 79 ~DyHr~haPv~G~v~~~~~i~G~~~~v~~~~~~~~-~~~~~~NeR~~~~i~~~-~G~v~~v~Vga~~v~~I~ 148 (202)
T PF02666_consen 79 FDYHRNHAPVDGRVEEVRYIPGKLLPVNPPALSHI-PGLFAENERVVLVIETK-FGKVAVVQVGALLVGSIV 148 (202)
T ss_pred CcceEEEecCCEEEEEEEEECccccccChHHhhcc-CCeeEEeeEEEEEEEEC-CCEEEEEEeccceeceeE
Confidence 99999999999999999999999999999998754 89999999999999964 899999999999999984
No 12
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-39 Score=314.16 Aligned_cols=187 Identities=31% Similarity=0.450 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhhcCcccccchHHHHHHhc-------cCCCccccCCC-CCCCCChhhhhcccCCCCCccCCCCCCCceee
Q 008313 369 LKSISEKQGRKMNSVESSKEIPKFVNFFK-------DQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAV 440 (570)
Q Consensus 369 ~~~~s~~~g~~~~s~~s~~~i~~f~~~~~-------~~i~~~e~~~~-~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~v 440 (570)
|+.+|++||.+..- .||.|++-|. +++||+|+..| +.+|+||.|||+|+|||++|||++ ...+|
T Consensus 87 lrtlSR~WG~~n~~-----elP~wlR~~~y~lys~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpIdp---~~piV 158 (382)
T KOG2420|consen 87 LRTLSRVWGQLNSL-----ELPVWLRPPGYGLYARTFGCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPIDP---ASPLV 158 (382)
T ss_pred hHHHHHHHHhhhhe-----eccchhcchhhhhhhHhhccCchhccCchhhhhhhHHHHHhhccCCCCcccCC---CCcee
Confidence 67899999976543 3554444221 48999999988 899999999999999999999986 46689
Q ss_pred ecCCceeeeeeeccCCceEEEcCCccchhhhcCCC--------cccC--CC------------CC---CeEEEEEeCCCC
Q 008313 441 CAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND--------ICSN--SF------------LN---GTMVIFRLAPQD 495 (570)
Q Consensus 441 spaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~--------~~~~--~f------------~~---g~~~~~~Lsp~d 495 (570)
|||||+|+.|+.|+++...||||.+|||++|||.. ++++ +. .. =+..++||+|.|
T Consensus 159 SPaDGkIL~fG~v~~~~IEqVKG~tYSleafLG~~~~P~~~~~d~~~f~~~~as~~~lk~~~s~~~~~Ly~~VIYLaPGD 238 (382)
T KOG2420|consen 159 SPADGKILHFGVVEDNEIEQVKGHTYSLEAFLGTHSHPSCASVDLPQFARVSASCDELKPSVSRPGTELYQCVIYLAPGD 238 (382)
T ss_pred cCCCCcEEEEEEecCceeeEecCeeeeHHHHcCCCCCCccccccccccccccCchhhhhhcCCCcccceeEEEEEccCCc
Confidence 99999999999999999999999999999999921 1111 01 11 157788999999
Q ss_pred CcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 496 YHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 496 YHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
|||||+|++++++..+|++|.+++|+|.... ..+++|+.|||+++..+. ..|.+.+++|||+|||||-
T Consensus 239 YH~fHSP~dWv~t~rRHf~G~l~svsp~~~~-~l~~lf~LnerV~l~G~w-khGFfs~taVGATNvGsI~ 306 (382)
T KOG2420|consen 239 YHRFHSPADWVATVRRHFPGLLLSVSPTLAR-WLPNLFCLNERVVLLGSW-KHGFFSMTAVGATNVGSIV 306 (382)
T ss_pred ccccCChHHhhhhhhhcccCcccccChhhhc-cCCceEEEEEEeeeccee-eeceeeeeeeccCccceEE
Confidence 9999999999999999999999999998765 559999999999987665 5999999999999999984
No 13
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=100.00 E-value=3.9e-38 Score=307.38 Aligned_cols=172 Identities=34% Similarity=0.474 Sum_probs=160.1
Q ss_pred HHHHHHHHHhhcCcccccchHHHHHHhccCCCccccCCCCCCCCChhhhhcccCCCCCccCCCCCCCceeeecCCceeee
Q 008313 370 KSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMA 449 (570)
Q Consensus 370 ~~~s~~~g~~~~s~~s~~~i~~f~~~~~~~i~~~e~~~~~~~y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~ 449 (570)
+.++...+.++.++.++..|.+|+..| .+||+|+..|...|.|||+||+|.+++..||+++ + .++|+||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~fi~~~--~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp----~-~v~P~D~~i~~ 85 (239)
T COG0688 13 RLFGLLAGVRSPSPIIKREIYPFIAAF--LVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDP----E-RVSPADGRIVV 85 (239)
T ss_pred hhHHHHhhhcCCCceeehhhhhHHHHH--HhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCC----C-ccCCCCCcEEE
Confidence 346777888889999999999999998 8999999988899999999999999999999985 2 79999999999
Q ss_pred eeeccCCceEEEcCCccchhhhcC-CCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCceeccChhhhccc
Q 008313 450 FKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSK 528 (570)
Q Consensus 450 ~~~i~~~~~~~iKg~~ysl~~ll~-~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~ 528 (570)
++ +||+.|++++||+ +.+++..|.+|+++++||||.||||+|+||+|+|.+++|+||.|++|||.+
T Consensus 86 ~p---------akG~~~sv~~ll~~~~el~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~~~~~~G~~~~v~~~~---- 152 (239)
T COG0688 86 SP---------ADGRVYSVEELLGPDDELAYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIEVRYVPGKFFSANLDK---- 152 (239)
T ss_pred ec---------CCCeEEEHHHhcCChhhhccccCCceEEEEEeCcceeeeEeCCCCCEEEEEEEECCceeccChhh----
Confidence 88 8999999999998 558889999999999999999999999999999999999999999999976
Q ss_pred CCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 529 YCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 529 ~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
+|++|||++++++|+ +|+|++|+|||++|++|.
T Consensus 153 ---~~~~NER~~~~i~t~-~g~v~~v~Vga~~v~~Iv 185 (239)
T COG0688 153 ---AFTENERNSVLIETE-QGKVVVVQVAGLVARRIV 185 (239)
T ss_pred ---hhcccceEEEEEEcC-CCcEEEEEEhhheeeEEE
Confidence 678999999999998 679999999999999974
No 14
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=99.89 E-value=2.4e-23 Score=198.52 Aligned_cols=116 Identities=24% Similarity=0.293 Sum_probs=97.9
Q ss_pred CCChhhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCC--eEEEE
Q 008313 412 FKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG--TMVIF 489 (570)
Q Consensus 412 y~s~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g--~~~~~ 489 (570)
+..|+.||+|. +.||++. ++++++|||||+|..++++ ++.|.+| .++++
T Consensus 15 ~~~~~~~ffR~---p~R~~~~--~~~~ivSPaDG~v~~i~~~------------------------~~~~~~g~~~~i~I 65 (189)
T TIGR00164 15 FTLFTLQFFRD---PDREIPQ--GPEAVLSPADGRIDVVERA------------------------RRPFPDGDGLKISI 65 (189)
T ss_pred HHHHHHHhcCC---CCCCCCC--CCCEEEeCCCcEEEEEEee------------------------ccccCCCcEEEEEE
Confidence 44588899887 7899864 6788999999999987653 2345555 67888
Q ss_pred EeCCCCCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhcccccc
Q 008313 490 RLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSR 564 (570)
Q Consensus 490 ~Lsp~dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~ 564 (570)
||||.||||+|+|++|+|.+.+++||.+++++- ..+|.+|||+++.++|+ .|.|++++||++.++++
T Consensus 66 ~Lsp~DyHr~haP~~G~v~~~~~~~G~~~~~~~-------~~~~~~NeR~~~~~~t~-~G~v~~v~v~~~~~~~i 132 (189)
T TIGR00164 66 FMSPFDVHVNRAPAGGKVTYVKHIDGSFVPAFL-------RKASTENERNAVLIKTA-SGEVGVVQIAGFVARRI 132 (189)
T ss_pred EcCCcccceEEcccccEEEEEEEECCeEeeccc-------CcccccceeEEEEEEcC-CCCEEEEEECeEEccEE
Confidence 999999999999999999999999999998641 35778999999999997 89999999999887765
No 15
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=99.86 E-value=1e-21 Score=189.84 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=99.2
Q ss_pred hhhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCC
Q 008313 415 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQ 494 (570)
Q Consensus 415 ~n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~ 494 (570)
|..||+|. +.||++. ++++++|||||++..++++++. ++++ +...+.+||+|.
T Consensus 37 ~~~~ffRd---p~R~~~~--~~~~i~SPaDG~v~~i~~v~d~--------------~~~~--------~~~~i~i~lsp~ 89 (206)
T PRK05305 37 FCLYFFRD---PERVIPT--DDGLVVSPADGKVVVIEEVVPP--------------YGDE--------PRLRISIFMSVF 89 (206)
T ss_pred HHHheecC---CCCCCCC--CCCEEEeCCCcEEEEEEEECCC--------------ccCC--------ceEEEEEEECcc
Confidence 67889888 6898864 6788999999999999988751 2222 235789999999
Q ss_pred CCcccccCCCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeeCCeeeEEEEhhhhccccccc
Q 008313 495 DYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 565 (570)
Q Consensus 495 dYHr~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~~~~N~R~~~~~~t~~~G~v~~v~VGa~~v~~~~ 565 (570)
||||+|+|++|+|.+.+|+||.+++++. +..+++|||+++.++|++.|.+++++|||+.++.+.
T Consensus 90 d~H~~~aP~~G~V~~~~~~~G~~~~~~~-------~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~ 153 (206)
T PRK05305 90 NVHVNRAPVSGTVTKVEYRPGKFLNAFL-------DKASEENERNAVVIETADGGEIGVVQIAGLIARRIV 153 (206)
T ss_pred cCCEEEeCccCEEEEEEEECCeEEecCC-------CcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE
Confidence 9999999999999999999999999963 245689999999999987889999999999887663
No 16
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.65 E-value=3.6e-16 Score=141.88 Aligned_cols=89 Identities=16% Similarity=0.283 Sum_probs=78.0
Q ss_pred ceeeEEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcc
Q 008313 51 DFAGIALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKS 124 (570)
Q Consensus 51 ~~~g~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~ 124 (570)
++.|.|++.|.++.. ..+|||||++.+|.+..||+++++++||+|||.+.|.+.. ....++++|||+|.++.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d-~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD-PNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC-CCceEEEEEEeCCCCCcc
Confidence 456899999999972 4799999999999999999999999999999955555444 566799999999999999
Q ss_pred cccCCceeeeeecccc
Q 008313 125 NLEGYCEVDLLEFLTK 140 (570)
Q Consensus 125 D~iG~~~i~l~ells~ 140 (570)
|+||+++|++..++..
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999998653
No 17
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.55 E-value=1.5e-14 Score=125.83 Aligned_cols=90 Identities=16% Similarity=0.270 Sum_probs=76.0
Q ss_pred eEEEEEEEeeec----------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEec-CCCceEEEEEEecccCC
Q 008313 54 GIALLTLISAEM----------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-NGPHVARISVFETNRLS 122 (570)
Q Consensus 54 g~l~v~v~~~~l----------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~-~~~~~l~~~v~D~D~~~ 122 (570)
|+|.|+|++|+. ++++|||+++.++.+.+||+++++|+||+|||.+.|.+.. .....|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 789999999983 1247999999999999999999999999999966664432 23457999999999999
Q ss_pred cccccCCceeeeeeccccCCc
Q 008313 123 KSNLEGYCEVDLLEFLTKDSD 143 (570)
Q Consensus 123 ~~D~iG~~~i~l~ells~~~~ 143 (570)
++|+||.+.+++.+++.....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999998755443
No 18
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.54 E-value=2.8e-14 Score=126.30 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=81.0
Q ss_pred eEEEEEEEeeec-----CCCCCeEEEEEeCCceeeeecccC-CCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 54 GIALLTLISAEM-----KFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 54 g~l~v~v~~~~l-----~~~~dp~~~v~~g~~~~rT~vik~-tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
|.|.|+|++|++ .+++|||+++++|.+++||+++++ ++||+|||+|.|.+..+ ...+.|+|||.|.++++|+|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCceE
Confidence 789999999995 258999999999999999999876 89999999776666543 35799999999999999999
Q ss_pred CCceeeeee-ccccCCccccchhhccCCC
Q 008313 128 GYCEVDLLE-FLTKDSDADSEVFDLLDPS 155 (570)
Q Consensus 128 G~~~i~l~e-lls~~~~~~~~~F~l~D~~ 155 (570)
|.+.+++.. +...... ..||.+...+
T Consensus 81 G~~~i~l~~~~~~g~~~--~~W~~L~~~~ 107 (121)
T cd04016 81 AWTHITIPESVFNGETL--DDWYSLSGKQ 107 (121)
T ss_pred EEEEEECchhccCCCCc--cccEeCcCcc
Confidence 999999974 4432222 5788887644
No 19
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.47 E-value=1.1e-13 Score=123.36 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=80.0
Q ss_pred EEEEEEEeee----c-----CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCC---
Q 008313 55 IALLTLISAE----M-----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLS--- 122 (570)
Q Consensus 55 ~l~v~v~~~~----l-----~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~--- 122 (570)
+|.|.|++|+ + .+++||||++++|.+.+||+++++++||+|||++.|.+.. ....|.++|||.|.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECCCccccc
Confidence 3678888887 3 4688999999999999999999999999999955555543 3347999999999874
Q ss_pred ---cccccCCceeeeeeccccCCccccchhhccCCCC
Q 008313 123 ---KSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 123 ---~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
++|+||++.+++.++...... ..+|.+.+.+.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~ 114 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVY--AHSYPLLSLNP 114 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEE--eeEEEeEeCCC
Confidence 899999999999997643332 56888887653
No 20
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.45 E-value=2e-13 Score=122.15 Aligned_cols=100 Identities=17% Similarity=0.296 Sum_probs=80.6
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEec-----CCCceEEEEEEecccCCcc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-----NGPHVARISVFETNRLSKS 124 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~-----~~~~~l~~~v~D~D~~~~~ 124 (570)
++|+|++|+. ++.+|||+.+.++...+||+++++++||+|||.+.|.+.. .....+.++|||+|.++++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 4788999983 4578999999999999999999999999999966666544 1345799999999999999
Q ss_pred cccCCceeeeeeccccCCccccchhhccCCC
Q 008313 125 NLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (570)
Q Consensus 125 D~iG~~~i~l~ells~~~~~~~~~F~l~D~~ 155 (570)
|+||.+.+++.++..........||.+.+..
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~ 111 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKP 111 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCC
Confidence 9999999999997632222226788887543
No 21
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.44 E-value=2.4e-13 Score=118.72 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=80.3
Q ss_pred EEEEEEeeec-------CCCCCeEEEEEeCCceeeeecccCCCCCcc-CcceeeEEecC--CCceEEEEEEecccCCccc
Q 008313 56 ALLTLISAEM-------KFKDKWLACVSLGEQTCRTAISDNTDKPIW-NSEKKLLLETN--GPHVARISVFETNRLSKSN 125 (570)
Q Consensus 56 l~v~v~~~~l-------~~~~dp~~~v~~g~~~~rT~vik~tLNP~W-ne~~~~~~~~~--~~~~l~~~v~D~D~~~~~D 125 (570)
|.|+|++|+. .+.+|||+++.++...+||+++++++||+| ||.+.|.+... .+..|.++|||+|.++++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 4688888872 236799999999999999999999999999 99655555432 2457999999999999999
Q ss_pred ccCCceeeeeeccccCCccc-cchhhccCC
Q 008313 126 LEGYCEVDLLEFLTKDSDAD-SEVFDLLDP 154 (570)
Q Consensus 126 ~iG~~~i~l~ells~~~~~~-~~~F~l~D~ 154 (570)
+||++.+++.++........ ..||.++|.
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~~ 110 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYDT 110 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEcccC
Confidence 99999999999876432333 779998873
No 22
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.42 E-value=4.8e-13 Score=116.95 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=73.7
Q ss_pred ccccceeeEEEEEEEeeec---CCCCCeEEEEEeCC----ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEe
Q 008313 47 LNEEDFAGIALLTLISAEM---KFKDKWLACVSLGE----QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l---~~~~dp~~~v~~g~----~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D 117 (570)
+.-....+.|.|+|++|+. .+.+||||.+.+.- ...+|.|.++|+||+|||.+.|.+..+ ....|.|.|||
T Consensus 7 L~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d 86 (118)
T cd08677 7 LSYDKQKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRC 86 (118)
T ss_pred EEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEe
Confidence 3344456899999999984 44589999998742 577999999999999999665544322 45569999999
Q ss_pred cccCCcccccCCceeeeeec
Q 008313 118 TNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 118 ~D~~~~~D~iG~~~i~l~el 137 (570)
.|++++||.||++.+.+.++
T Consensus 87 ~Drfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 87 CDRFSRHSTLGELRLKLADV 106 (118)
T ss_pred CCCCCCCceEEEEEEccccc
Confidence 99999999999999999985
No 23
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.42 E-value=6e-13 Score=116.32 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=72.0
Q ss_pred eEEEEEEEeeec------C-CCCCeEEEEEe---CCceeeeecccCCCCCccCcceeeEEecC---CCceEEEEEEeccc
Q 008313 54 GIALLTLISAEM------K-FKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLLETN---GPHVARISVFETNR 120 (570)
Q Consensus 54 g~l~v~v~~~~l------~-~~~dp~~~v~~---g~~~~rT~vik~tLNP~Wne~~~~~~~~~---~~~~l~~~v~D~D~ 120 (570)
|+|+|+|++|+. . .++|||+.+.+ +...+||+++++|+||+|||.+.+.+... ....+.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 689999999983 3 57899999987 34678999999999999999665544322 34579999999999
Q ss_pred CCcccccCCceeeeeeccc
Q 008313 121 LSKSNLEGYCEVDLLEFLT 139 (570)
Q Consensus 121 ~~~~D~iG~~~i~l~ells 139 (570)
++++|+||.+.+++.+++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCcceEEEEEHHHHhc
Confidence 9999999999999999874
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=8e-13 Score=122.14 Aligned_cols=118 Identities=31% Similarity=0.529 Sum_probs=102.7
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcc-----hHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQV-----AANK 216 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~-----~~~e 216 (570)
++.|.++|.+++|+| ++.+++.++. .|+..+ +..+++.+|.|++|.|+++||..++....... ..++
T Consensus 11 ~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~e---l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 11 KEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEE---LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 789999999999998 7888888864 678877 99999999999999999999999998754432 3459
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhccccCchh
Q 008313 217 KEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI 271 (570)
Q Consensus 217 i~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~dl~ 271 (570)
++++|+.||+|++|+||.+||..+|..++++... ..|.+++...|.+++..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~----~e~~~mi~~~d~d~dg~ 137 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD----EECKEMIREVDVDGDGK 137 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH----HHHHHHHHhcCCCCCCe
Confidence 9999999999999999999999999999998763 57889998888766654
No 25
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.39 E-value=1.1e-12 Score=119.98 Aligned_cols=87 Identities=21% Similarity=0.370 Sum_probs=75.7
Q ss_pred eEEEEEEEeeec-----CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccC
Q 008313 54 GIALLTLISAEM-----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (570)
Q Consensus 54 g~l~v~v~~~~l-----~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG 128 (570)
|.|+|+|++|+. ..++|||++++++.+..||+++++++||+|||.+.|.+.. ....+.++|||+|.++++|+||
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~-~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN-PMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC-CCCEEEEEEEECCCCCCCCEEE
Confidence 789999999983 3478999999999999999999999999999966666544 3567999999999999999999
Q ss_pred CceeeeeeccccC
Q 008313 129 YCEVDLLEFLTKD 141 (570)
Q Consensus 129 ~~~i~l~ells~~ 141 (570)
.+.+++.+++...
T Consensus 81 ~a~i~l~~l~~~~ 93 (145)
T cd04038 81 EAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEHHHhhhhh
Confidence 9999999986543
No 26
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.39 E-value=1.3e-12 Score=118.54 Aligned_cols=86 Identities=23% Similarity=0.391 Sum_probs=75.9
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
|.|+|+|++|+. .+++|||+.+.++...+||+++++|+||+|||.+.|.+.......+.++|||+|.++++|+|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~l 94 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFL 94 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCee
Confidence 799999999983 45789999999999999999999999999999666655443456799999999999999999
Q ss_pred CCceeeeeeccc
Q 008313 128 GYCEVDLLEFLT 139 (570)
Q Consensus 128 G~~~i~l~ells 139 (570)
|.+.+++.+++.
T Consensus 95 G~~~i~l~~l~~ 106 (136)
T cd08375 95 GRTEIRVADILK 106 (136)
T ss_pred EEEEEEHHHhcc
Confidence 999999999875
No 27
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.38 E-value=1.4e-12 Score=115.04 Aligned_cols=97 Identities=20% Similarity=0.326 Sum_probs=79.3
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccC-CCCCccCcceeeEEecCCCceEEEEEEecccCCcccc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~-tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~ 126 (570)
|.|+|.|++|+. ..++|||+.+.++..+.||+++++ ++||+|||.+.|.+..+....+.++|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 578999999983 447899999999999999999865 799999996666665544567999999999877 899
Q ss_pred cCCceeeeeeccccCCccccchhhccC
Q 008313 127 EGYCEVDLLEFLTKDSDADSEVFDLLD 153 (570)
Q Consensus 127 iG~~~i~l~ells~~~~~~~~~F~l~D 153 (570)
||.+.+++.+++..... ..||.+..
T Consensus 80 iG~~~~~l~~~~~~~~~--~~w~~L~~ 104 (118)
T cd08681 80 IGDTEVDLSPALKEGEF--DDWYELTL 104 (118)
T ss_pred eEEEEEecHHHhhcCCC--CCcEEecc
Confidence 99999999997654332 56777764
No 28
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.38 E-value=1.6e-12 Score=115.46 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=80.4
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
.|+|+|++|+. .+.+|||+.+.++. .++||+++++++||+|||.+.|.+.. ....+.|+|||+|.++++|+|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCCCCCCCcce
Confidence 37889999983 34789999999976 78999999999999999966555443 356799999999999999999
Q ss_pred CCceeeeeeccccCCccccchhhccCCCC
Q 008313 128 GYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 128 G~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
|.+.+++.++...... ..++.+.+.++
T Consensus 80 G~~~~~l~~l~~~~~~--~~~~~L~~~~~ 106 (121)
T cd04042 80 GSAFVDLSTLELNKPT--EVKLKLEDPNS 106 (121)
T ss_pred EEEEEEHHHcCCCCCe--EEEEECCCCCC
Confidence 9999999997754333 45778877654
No 29
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.37 E-value=1.6e-12 Score=113.67 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=82.5
Q ss_pred EEEEEEEeeec--CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecC----CCceEEEEEEecccCCcccccC
Q 008313 55 IALLTLISAEM--KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETN----GPHVARISVFETNRLSKSNLEG 128 (570)
Q Consensus 55 ~l~v~v~~~~l--~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~----~~~~l~~~v~D~D~~~~~D~iG 128 (570)
.|+|+|++|+. +++.|||+.++++++..||+++++++||.|||.+.|.+... .+..+.++|||++.++++++||
T Consensus 5 ~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG 84 (111)
T cd04011 5 QVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIG 84 (111)
T ss_pred EEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccE
Confidence 68899999984 56889999999999999999999999999999554443221 1356999999999999999999
Q ss_pred CceeeeeeccccCCccc-cchhhccCC
Q 008313 129 YCEVDLLEFLTKDSDAD-SEVFDLLDP 154 (570)
Q Consensus 129 ~~~i~l~ells~~~~~~-~~~F~l~D~ 154 (570)
.+.+++.++........ .+||.+.||
T Consensus 85 ~~~i~l~~v~~~~~~~~~~~w~~L~~~ 111 (111)
T cd04011 85 SFKLDVGTVYDQPDHAFLRKWLLLTDP 111 (111)
T ss_pred EEEECCccccCCCCCcceEEEEEeeCc
Confidence 99999999876544444 778888775
No 30
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.37 E-value=2e-12 Score=115.45 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=75.1
Q ss_pred ccceeeEEEEEEEeeec-----CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEE-ecCCCceEEEEEEecccCC
Q 008313 49 EEDFAGIALLTLISAEM-----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL-ETNGPHVARISVFETNRLS 122 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l-----~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~-~~~~~~~l~~~v~D~D~~~ 122 (570)
+..-.|.|.|+|++|+. ..+.|||+.|.++.+++||+++++++||+|||.+.|.. .......|.|+|||+|.++
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred CcCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 45555899999999983 34679999999999999999999999999999554432 2234568999999999999
Q ss_pred cccccCCceeeeeecc
Q 008313 123 KSNLEGYCEVDLLEFL 138 (570)
Q Consensus 123 ~~D~iG~~~i~l~ell 138 (570)
++|+||.+.+++....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999998754
No 31
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.37 E-value=2.3e-12 Score=115.25 Aligned_cols=101 Identities=19% Similarity=0.310 Sum_probs=82.6
Q ss_pred eEEEEEEEeee-c-------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccc
Q 008313 54 GIALLTLISAE-M-------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSN 125 (570)
Q Consensus 54 g~l~v~v~~~~-l-------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D 125 (570)
|+|+|.|++|+ + ..++|||+.+.++...++|+++++++||+||+.+.+.+.......+.++|||+|..+++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 68999999998 2 237799999999999999999999999999996666555444678999999999999999
Q ss_pred ccCCceeeeeeccccCCccc-cchhhccCC
Q 008313 126 LEGYCEVDLLEFLTKDSDAD-SEVFDLLDP 154 (570)
Q Consensus 126 ~iG~~~i~l~ells~~~~~~-~~~F~l~D~ 154 (570)
+||.+.+++.++........ ..||.+.+.
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~ 110 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQSDKWITLKST 110 (128)
T ss_pred cceEEEEEHHHhhcccccCccceeEEccCc
Confidence 99999999999764222222 567887765
No 32
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.35 E-value=2.3e-12 Score=113.42 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=79.3
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccC
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG 128 (570)
+++|.|++|+. ...+|||+.++++...+||+++++|+||.|||.+.|.+.......+.++|||+|.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 57889999982 346799999999999999999999999999995555544434578999999999999999999
Q ss_pred CceeeeeeccccCCccccchhhccCC
Q 008313 129 YCEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 129 ~~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
.+.+++.++...... ..|+.+.+.
T Consensus 81 ~~~~~l~~l~~~~~~--~~w~~L~~~ 104 (116)
T cd08376 81 RCEIDLSALPREQTH--SLELELEDG 104 (116)
T ss_pred EEEEeHHHCCCCCce--EEEEEccCC
Confidence 999999996543322 567777643
No 33
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.35 E-value=2.5e-12 Score=117.59 Aligned_cols=124 Identities=27% Similarity=0.362 Sum_probs=105.0
Q ss_pred cccCCccc-cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH-hCCc
Q 008313 138 LTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQ 211 (570)
Q Consensus 138 ls~~~~~~-~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~~ 211 (570)
++.+++++ ++.|.++|++++|.| ++.+++.++. .+++.+ +.++|..+|. ++|.|++.+|..+|.. ....
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~e---i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAE---INKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHH---HHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 44555555 889999999999998 7778887754 677666 8999999999 9999999999999987 4566
Q ss_pred chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhccccCch
Q 008313 212 VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 270 (570)
Q Consensus 212 ~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~dl 270 (570)
.+.++++++|+.||+|+||+|+..|++.+++.+++..++ ..+.+++...+.+++.
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~d----eev~~ll~~~d~d~dG 143 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD----EEVEKLLKEYDEDGDG 143 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCH----HHHHHHHHhcCCCCCc
Confidence 778999999999999999999999999999999998876 4677788777765554
No 34
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.34 E-value=1.3e-12 Score=116.08 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=80.4
Q ss_pred EEEEEEEeeec--CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCcee
Q 008313 55 IALLTLISAEM--KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEV 132 (570)
Q Consensus 55 ~l~v~v~~~~l--~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i 132 (570)
+|.|+|++|+. ..++|||+.+.++....||+++++|+||+|||.+.|.+.......+.++|||+|.. ++|+||.+.+
T Consensus 1 ~L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i 79 (121)
T cd08378 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCF 79 (121)
T ss_pred CEEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEE
Confidence 47899999983 22889999999999999999999999999999555544332456799999999987 7899999999
Q ss_pred eeeeccccCC--ccc-cchhhccCCCC
Q 008313 133 DLLEFLTKDS--DAD-SEVFDLLDPSS 156 (570)
Q Consensus 133 ~l~ells~~~--~~~-~~~F~l~D~~~ 156 (570)
++.++..... ... ..||.+.+..+
T Consensus 80 ~l~~l~~~~~~~~~~~~~W~~L~~~~~ 106 (121)
T cd08378 80 DLSEVPTRVPPDSPLAPQWYRLEDKKG 106 (121)
T ss_pred EhHhCcCCCCCCCCCCcceEEccCCCC
Confidence 9999754332 112 57999887654
No 35
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.34 E-value=3.9e-12 Score=117.17 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=81.9
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccC-CCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~-tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
+|+|+|++|+. .+++|||+++.++.+..||+++++ ++||+|||.|.|.+.......+.++|+|++..+++|+|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 47899999983 458899999999999999999977 69999999666665433345799999999999999999
Q ss_pred CCceeeeeeccccCCc-cc-cchhhccCCC
Q 008313 128 GYCEVDLLEFLTKDSD-AD-SEVFDLLDPS 155 (570)
Q Consensus 128 G~~~i~l~ells~~~~-~~-~~~F~l~D~~ 155 (570)
|.+.+++.++...... .. ..||.+.++.
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 9999999997543222 22 6799998765
No 36
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.34 E-value=3.2e-12 Score=113.74 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=72.7
Q ss_pred eeEEEEEEEeeec-----CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEE-ec--CCCceEEEEEEecc
Q 008313 53 AGIALLTLISAEM-----KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLL-ET--NGPHVARISVFETN 119 (570)
Q Consensus 53 ~g~l~v~v~~~~l-----~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~-~~--~~~~~l~~~v~D~D 119 (570)
.+.|.|+|++|+. +..+||||.+.+. ....||+++++++||+|||++.|.. +. .....|.++|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 6789999999983 4478999999985 3578999999999999999555543 21 13467999999999
Q ss_pred cCCcccccCCceeeeeecccc
Q 008313 120 RLSKSNLEGYCEVDLLEFLTK 140 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ells~ 140 (570)
.++++|+||++.+++.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 999999999999999997643
No 37
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.34 E-value=3.3e-12 Score=113.05 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=82.6
Q ss_pred eEEEEEEEeeec-----C-------CCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccC
Q 008313 54 GIALLTLISAEM-----K-------FKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL 121 (570)
Q Consensus 54 g~l~v~v~~~~l-----~-------~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~ 121 (570)
|+|+|.|.+|+. . +.+|||+.+.++.++++|+++++++||+|||.+.+.+.......+.++|||+|..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 678999999982 1 3679999999999999999999999999999666665544456899999999998
Q ss_pred CcccccCCceeeeeeccccCCccccchhhccCCCCchh
Q 008313 122 SKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSNK 159 (570)
Q Consensus 122 ~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~Gk 159 (570)
++|+||.+.+++.++...... ..||.+.+. ..|+
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~--~~w~~L~~~-~~G~ 114 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI--DEWLPLEDV-KSGR 114 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc--ceEEECcCC-CCce
Confidence 889999999999997653322 578887764 3454
No 38
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.34 E-value=4.4e-12 Score=112.87 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=77.7
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCC
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~ 129 (570)
|+|+|++|+. ...+|||+.+.++...++|+++++|+||+|||.+.+.+.......+.|+|||++.++++|+||.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~ 81 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK 81 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence 6788888883 3467999999999999999999999999999966555544345679999999999999999999
Q ss_pred ceeeeeeccccCCccccchhhccC
Q 008313 130 CEVDLLEFLTKDSDADSEVFDLLD 153 (570)
Q Consensus 130 ~~i~l~ells~~~~~~~~~F~l~D 153 (570)
+.+++.++...... ..||.+..
T Consensus 82 ~~~~l~~l~~~~~~--~~w~~L~~ 103 (123)
T cd04025 82 VVFSIQTLQQAKQE--EGWFRLLP 103 (123)
T ss_pred EEEEHHHcccCCCC--CCEEECCC
Confidence 99999997543222 45776654
No 39
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.33 E-value=4.2e-12 Score=109.82 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=78.1
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCC
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~ 129 (570)
|.|+|++|+. ++.+|||+.++++++.+||+++++|+||+|||.+.|.+.......+.++|+|++. +++||.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 6788898883 4588999999999999999999999999999976666654345679999999987 789999
Q ss_pred ceeeeeeccccCCccccchhhccCC
Q 008313 130 CEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 130 ~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
+.+++.++..........||.+.+.
T Consensus 79 ~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccccceeeeeEecCCC
Confidence 9999999875431112678888653
No 40
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.31 E-value=7.7e-12 Score=110.54 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=72.7
Q ss_pred EEEEEEeeec-----CCCCCeEEEEEe-C----C--ceeeeecccCCCCCccCcceeeEEec---CCCceEEEEEEeccc
Q 008313 56 ALLTLISAEM-----KFKDKWLACVSL-G----E--QTCRTAISDNTDKPIWNSEKKLLLET---NGPHVARISVFETNR 120 (570)
Q Consensus 56 l~v~v~~~~l-----~~~~dp~~~v~~-g----~--~~~rT~vik~tLNP~Wne~~~~~~~~---~~~~~l~~~v~D~D~ 120 (570)
|+|+|++|+. .+.+||||.|.+ | . +.+||.++++|+||+|||.|.|.+.. .....|.|.|+|+|.
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~ 81 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF 81 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc
Confidence 6789999983 357799999996 3 2 46799999999999999977666542 123459999999998
Q ss_pred CCcccccCCceeeeeeccccCCccccchhhc
Q 008313 121 LSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 121 ~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
.+++|+||.+.+++.++...... ..|+.+
T Consensus 82 ~~~dd~IG~~~l~l~~~~~~~~~--~~w~~L 110 (120)
T cd08395 82 ARDDRLVGVTVLQLRDIAQAGSC--ACWLPL 110 (120)
T ss_pred cCCCCEEEEEEEEHHHCcCCCcE--EEEEEC
Confidence 88999999999999997644432 345544
No 41
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.31 E-value=8e-12 Score=110.80 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=81.8
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~ 126 (570)
|+|+|.|++|+. ..++|||+.+.++. .+.+|+++++++||+|||.+.+.+.. ....+.++|||++.++++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS-PNQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecC-CCCEEEEEEEECCCCCCCCe
Confidence 689999999983 45889999999965 67899999999999999955444433 34689999999999999999
Q ss_pred cCCceeeeeeccccCCccccchhhccCCCC
Q 008313 127 EGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 127 iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
||++.+++.+++.... ..+|.++|.++
T Consensus 80 IG~~~~~l~~l~~~~~---~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKNE---DGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCCC---CceEEecCCCc
Confidence 9999999999876522 57888888763
No 42
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.30 E-value=6e-12 Score=112.44 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=79.6
Q ss_pred ccccceeeEEEEEEEeeec-------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEE
Q 008313 47 LNEEDFAGIALLTLISAEM-------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVAR 112 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l-------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~ 112 (570)
+.-....+.|.|+|++|+. .+.+||||.+.+. ....||+++++++||+|||.+.|.+... ....+.
T Consensus 8 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~ 87 (125)
T cd04029 8 LSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQ 87 (125)
T ss_pred EEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEE
Confidence 4455567899999999992 2478999999873 2467999999999999999666655332 345799
Q ss_pred EEEEecccCCcccccCCceeeeeeccccCCccccchhhc
Q 008313 113 ISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 113 ~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
|+|||+|.++++|+||++.+++.++-..... ..|+.+
T Consensus 88 ~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~--~~w~~l 124 (125)
T cd04029 88 LSVWHYDRFGRNTFLGEVEIPLDSWNFDSQH--EECLPL 124 (125)
T ss_pred EEEEECCCCCCCcEEEEEEEeCCcccccCCc--ccEEEC
Confidence 9999999999999999999999997443332 445543
No 43
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.29 E-value=5.4e-12 Score=111.48 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=80.5
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
|.|.|+|++|+. ...+|||+.+.++...++|+++++++||+|||++.+.+.. ....+.++|||++.++++|++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCcee
Confidence 578999999983 4478999999999888999999999999999955544432 356799999999999999999
Q ss_pred CCceeeeeeccccCCccccchhhccCCCCch
Q 008313 128 GYCEVDLLEFLTKDSDADSEVFDLLDPSSSN 158 (570)
Q Consensus 128 G~~~i~l~ells~~~~~~~~~F~l~D~~~~G 158 (570)
|.+.+++.++.... ..|+.+.++...+
T Consensus 80 G~~~~~l~~~~~~~----~~~~~l~~~~~~~ 106 (119)
T cd08377 80 GKVAIPLLSIKNGE----RKWYALKDKKLRT 106 (119)
T ss_pred eEEEEEHHHCCCCC----ceEEECcccCCCC
Confidence 99999999864321 4578877665433
No 44
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.29 E-value=7.6e-12 Score=110.91 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=73.4
Q ss_pred EEEEEEEeeec-----CCCCCeEEEEEeCCc-------eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEeccc--
Q 008313 55 IALLTLISAEM-----KFKDKWLACVSLGEQ-------TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR-- 120 (570)
Q Consensus 55 ~l~v~v~~~~l-----~~~~dp~~~v~~g~~-------~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~-- 120 (570)
++.+++.+..+ ..++|||+.+.+... .+||+++++|+||+|||.+.+.+..+....+.++|||+|.
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 35667666654 346799999988654 4899999999999999966554433345679999999997
Q ss_pred --CCcccccCCceeeeeeccccCCccccchhhcc
Q 008313 121 --LSKSNLEGYCEVDLLEFLTKDSDADSEVFDLL 152 (570)
Q Consensus 121 --~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~ 152 (570)
++++|+||++.+++.+++..+.. ..++.+.
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~~--~~~~~l~ 113 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPGQ--KLTLPLK 113 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCc--EEEEEcc
Confidence 89999999999999998764433 3455553
No 45
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.28 E-value=1.4e-11 Score=112.60 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=79.5
Q ss_pred eeeEEEEEEEeeec-------CCCCCeEEEEEeC--C---ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEE-ec
Q 008313 52 FAGIALLTLISAEM-------KFKDKWLACVSLG--E---QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVF-ET 118 (570)
Q Consensus 52 ~~g~l~v~v~~~~l-------~~~~dp~~~v~~g--~---~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~-D~ 118 (570)
..|.|.|+|++|+. .+.+||||.+.+. . ...||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 45899999999983 1357999999873 2 3679999999999999996666655 46678999999 79
Q ss_pred ccCCcccccCCceeeeeeccccCCccccchhhccCCC
Q 008313 119 NRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (570)
Q Consensus 119 D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~ 155 (570)
++++++|+||++.+++.++-..... ..||.+.+..
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~--~~Wy~L~~~~ 140 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLV--IGWYKLFPTS 140 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCc--eeEEecCCcc
Confidence 9999999999999999996322222 5688877643
No 46
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.28 E-value=7.4e-12 Score=111.87 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=77.2
Q ss_pred ccceeeEEEEEEEeeec------C-CCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 49 EEDFAGIALLTLISAEM------K-FKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l------~-~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
-....+.|.|+|++|+. . +.+||||.+.+. ....||+++++|+||+|||.+.|.+... ....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 33445689999999983 2 478999999873 2457999999999999999665554322 34579999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccccchhhc
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
|||+|.++++|+||++.+++.++-..... ..||.+
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~--~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQ--PTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCC--cceEEC
Confidence 99999999999999999999996332222 456654
No 47
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.28 E-value=9.5e-12 Score=110.07 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=77.3
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeC---CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g---~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~ 126 (570)
|.|+|++|+. ..++|||+.+.++ ....||+++++|+||+|||.+.|.+.......+.|+|||+|.+ ++|+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 6788888883 3478999999975 4678999999999999999666655444455799999999998 9999
Q ss_pred cCCceeeeeeccccCCccccchhhccCCCCchh
Q 008313 127 EGYCEVDLLEFLTKDSDADSEVFDLLDPSSSNK 159 (570)
Q Consensus 127 iG~~~i~l~ells~~~~~~~~~F~l~D~~~~Gk 159 (570)
||.+.+++.++...... ..+|.+.+ .+.|.
T Consensus 81 iG~~~~~l~~l~~g~~~--~~~~~L~~-~~~g~ 110 (119)
T cd04036 81 LGTVLFDVSKLKLGEKV--RVTFSLNP-QGKEE 110 (119)
T ss_pred cEEEEEEHHHCCCCCcE--EEEEECCC-CCCce
Confidence 99999999997543222 55777654 34454
No 48
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.28 E-value=3.9e-12 Score=113.91 Aligned_cols=99 Identities=13% Similarity=0.212 Sum_probs=78.0
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecC---CCceEEEEEEecccCC-ccc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETN---GPHVARISVFETNRLS-KSN 125 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~---~~~~l~~~v~D~D~~~-~~D 125 (570)
|.|+|++|+. .+.+|||+.+.++.+..||+++++++||+|||.+.|.+... ....+.++|||.++++ ++|
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 6789999983 44789999999999999999999999999999555544321 2356999999999987 899
Q ss_pred ccCCceeeeeeccccCCccccchhhccCCC
Q 008313 126 LEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (570)
Q Consensus 126 ~iG~~~i~l~ells~~~~~~~~~F~l~D~~ 155 (570)
+||.+.+++.++....+. ...||.+..+.
T Consensus 82 ~lG~v~i~l~~l~~~~~~-~~~w~~L~~~~ 110 (127)
T cd04022 82 FLGRVRISGTSFVPPSEA-VVQRYPLEKRG 110 (127)
T ss_pred eeeEEEEcHHHcCCCCCc-cceEeEeeeCC
Confidence 999999999997632211 15688887654
No 49
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.27 E-value=1.5e-11 Score=109.34 Aligned_cols=89 Identities=25% Similarity=0.378 Sum_probs=75.6
Q ss_pred eEEEEEEEeeec-------CCCCCeEEEEEeCC--ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcc
Q 008313 54 GIALLTLISAEM-------KFKDKWLACVSLGE--QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKS 124 (570)
Q Consensus 54 g~l~v~v~~~~l-------~~~~dp~~~v~~g~--~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~ 124 (570)
|+|.|+|.+|+. .+..|||+.++++. .++||+++++++||+|||.+.+.+. .....+.++|||++..+++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence 789999999983 23579999999987 8999999999999999996666555 3467899999999999999
Q ss_pred cccCCceeeeeeccccCCc
Q 008313 125 NLEGYCEVDLLEFLTKDSD 143 (570)
Q Consensus 125 D~iG~~~i~l~ells~~~~ 143 (570)
++||.+.+++.++......
T Consensus 81 ~~iG~~~~~l~~l~~~~~~ 99 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQ 99 (124)
T ss_pred ceeEEEEEEHHHhccCccc
Confidence 9999999999998755443
No 50
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.26 E-value=1.5e-11 Score=113.10 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEec-CCCceEEEEEEecccCCcccccCCceeeeeeccccCCc---
Q 008313 68 KDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET-NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD--- 143 (570)
Q Consensus 68 ~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~-~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~--- 143 (570)
.+||||.|.++.+..||+++++++||+|||.+.|.+.. .....+.++|||+|..+++|+||.+.+++.++...+..
T Consensus 34 ~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~l 113 (151)
T cd04018 34 LVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFL 113 (151)
T ss_pred CcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccC
Confidence 57999999999999999999999999999955554322 23467999999999999999999999999997654431
Q ss_pred c-c-cchhhccCCCC
Q 008313 144 A-D-SEVFDLLDPSS 156 (570)
Q Consensus 144 ~-~-~~~F~l~D~~~ 156 (570)
. . +.|++++++-.
T Consensus 114 p~~~p~W~~lyg~~~ 128 (151)
T cd04018 114 PTFGPSFVNLYGSPR 128 (151)
T ss_pred CccCceEEEeecCcc
Confidence 1 1 57888877643
No 51
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.26 E-value=2.3e-11 Score=107.48 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=75.9
Q ss_pred eEEEEEEEeeec-C--CCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCc
Q 008313 54 GIALLTLISAEM-K--FKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYC 130 (570)
Q Consensus 54 g~l~v~v~~~~l-~--~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~ 130 (570)
+.|.|.|++|+. . ...+||++|++|++..+|.++++ .||+|||.|.|..+. ....|.++|||+|.+ .+|+||.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd~~-~DD~lG~v 78 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKGLI-WDTLVGTV 78 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCCCc-CCCceEEE
Confidence 478999999995 2 23489999999999999999988 499999955555443 444599999999965 89999999
Q ss_pred eeeeeeccccCCccccchhhcc
Q 008313 131 EVDLLEFLTKDSDADSEVFDLL 152 (570)
Q Consensus 131 ~i~l~ells~~~~~~~~~F~l~ 152 (570)
.++|.+++..+..-.++||.+.
T Consensus 79 ~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 79 WIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEhHHcccCCCCCCCccEecC
Confidence 9999998765432226787775
No 52
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.25 E-value=1.7e-11 Score=112.55 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=77.3
Q ss_pred EEEEEEeeec----CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEe-------------c-C-CCceE
Q 008313 56 ALLTLISAEM----KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLE-------------T-N-GPHVA 111 (570)
Q Consensus 56 l~v~v~~~~l----~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~-------------~-~-~~~~l 111 (570)
|.|+|++|+. .+.+||||.|.+.. ...||+++++|+||+|||.|.|.+. . + ....+
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L 81 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLEL 81 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEE
Confidence 6788999983 44789999999865 6789999999999999996666553 1 1 22469
Q ss_pred EEEEEecccCCcccccCCceeeeeecccc-CCccccchhhccCCC
Q 008313 112 RISVFETNRLSKSNLEGYCEVDLLEFLTK-DSDADSEVFDLLDPS 155 (570)
Q Consensus 112 ~~~v~D~D~~~~~D~iG~~~i~l~ells~-~~~~~~~~F~l~D~~ 155 (570)
.+.|||.+.++++|+||.+.+++.++... ... ..||.+.+..
T Consensus 82 ~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~--~~W~~L~~~~ 124 (148)
T cd04010 82 RVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSH--QAWYFLQPRE 124 (148)
T ss_pred EEEEEcCCCCCCCceeEEEEEecccccccCCcC--cceeecCCcc
Confidence 99999999999999999999999996543 222 5688887654
No 53
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.25 E-value=1.9e-11 Score=109.34 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=75.9
Q ss_pred EEEEEEeeec----CCCCCeEEEEEeCC--ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCC
Q 008313 56 ALLTLISAEM----KFKDKWLACVSLGE--QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (570)
Q Consensus 56 l~v~v~~~~l----~~~~dp~~~v~~g~--~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~ 129 (570)
|.|+|++|+. .+++|||+++.++. +.+||+++++|+||+|||.+.|.+.. ....+.++|||+|..+++|+||.
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceEEE
Confidence 4577888874 35889999999973 67899999999999999966555532 34679999999999999999999
Q ss_pred ceeeeeeccccCCccccchhhccCC
Q 008313 130 CEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 130 ~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
+.+++.++...... ..+|.+...
T Consensus 80 ~~i~l~~l~~~~~~--~~~~~L~~~ 102 (126)
T cd08678 80 AIVPFDELRKNPSG--RQIFPLQGR 102 (126)
T ss_pred EEEeHHHhccCCce--eEEEEecCC
Confidence 99999998755443 456666543
No 54
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.25 E-value=8.8e-12 Score=110.71 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=73.7
Q ss_pred EEEEEEeeec-------CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 56 ALLTLISAEM-------KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 56 l~v~v~~~~l-------~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
|.|.|+.|+. .+.+|||+.+.++.. ++||+++++|+||+|||.|.+.+.. ....+.|.|||+|.++++|+|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~-~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR-TFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC-CCCEEEEEEEECCCCCCCceE
Confidence 4677777772 236799999999764 7899999999999999955554443 346799999999999999999
Q ss_pred CCceeeeeeccccCCccccchhhccC
Q 008313 128 GYCEVDLLEFLTKDSDADSEVFDLLD 153 (570)
Q Consensus 128 G~~~i~l~ells~~~~~~~~~F~l~D 153 (570)
|.+.+++.++...... ..||.+.-
T Consensus 81 G~~~i~l~~l~~~~~~--~~w~~L~~ 104 (121)
T cd08401 81 GKVAIKKEDLHKYYGK--DTWFPLQP 104 (121)
T ss_pred EEEEEEHHHccCCCCc--EeeEEEEc
Confidence 9999999997543222 45777653
No 55
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.25 E-value=2.1e-11 Score=109.34 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=79.1
Q ss_pred ccceeeEEEEEEEeeec------C-CCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 49 EEDFAGIALLTLISAEM------K-FKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l------~-~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
-....+.|.|+|++|+. . +..||||.+.+. ....||+++++++||+|||.|.|.+..+ ....|.+.
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 34445799999999983 2 578999999874 2467999999999999999666655332 34679999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccc-cchhhc
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDL 151 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~-~~~F~l 151 (570)
|||.+.++++|+||++.+++.++-..+.... ..||.+
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999999999999999733322222 567754
No 56
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.25 E-value=1.7e-11 Score=109.33 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred cccccceeeEEEEEEEeeec------CCCCCeEEEEEeC---CceeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 46 VLNEEDFAGIALLTLISAEM------KFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 46 ~~~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g---~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
++...+..+.|.|+|++|+. .+..|||+.+.+. ..++||+++++++||+|||.+.|.+... ....+.++
T Consensus 8 sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~ 87 (124)
T cd08387 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVL 87 (124)
T ss_pred EEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence 34555666899999999983 4468999999873 4678999999999999999555544322 24579999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccccchhhc
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
|||+|.++++++||.+.+++.++...+.. ..|+++
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~~~~--~~W~~l 122 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLSEKL--DLWRKI 122 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCCCCc--ceEEEC
Confidence 99999999999999999999997543322 445554
No 57
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.24 E-value=2.6e-11 Score=108.15 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=70.2
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCCce--eeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGEQT--CRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~~~--~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~ 126 (570)
+|+|.|++|+. ..++|||+.+.++... .||+++++|+||+|||.+.+.+.......+.++|||+|.++++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 47889999982 4588999999998754 589999999999999955554444445679999999999999999
Q ss_pred cCCceeeeeecc
Q 008313 127 EGYCEVDLLEFL 138 (570)
Q Consensus 127 iG~~~i~l~ell 138 (570)
||.+.+++.+.+
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999864
No 58
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.23 E-value=2.5e-11 Score=108.10 Aligned_cols=101 Identities=22% Similarity=0.184 Sum_probs=77.6
Q ss_pred ccceeeEEEEEEEeeec------CCCCCeEEEEEeC---CceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEe
Q 008313 49 EEDFAGIALLTLISAEM------KFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g---~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D 117 (570)
.....+.|.|+|++|+. .+..||||.+.+. ..++||+++++++||+|||.+.|.+... ....+.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 34455899999999983 4467999999863 3678999999999999999555554321 24579999999
Q ss_pred cccCCcccccCCceeeeeeccccCCccccchhhc
Q 008313 118 TNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 118 ~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
+|.++++|+||++.+++.++...... ..|+++
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~--~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVT--EEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCc--ceEEEc
Confidence 99999999999999999997443222 345543
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.22 E-value=1.7e-11 Score=109.21 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=76.1
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeC-CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCc--ccc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSK--SNL 126 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g-~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~--~D~ 126 (570)
|+|+|++|+. ...+|||+++.++ .+++||+++++++||+|||.+.+.+. ....+.++|||++.+++ +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~--~~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVG--PSSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeC--CCCEEEEEEEECCCCCCCCCce
Confidence 6788998882 3478999999995 78999999999999999995555543 35789999999999886 479
Q ss_pred cCCceeeeeeccccCCccccchhhccCCCC
Q 008313 127 EGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 127 iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
||.+.+++.+++..... ...+|.+.+...
T Consensus 80 lG~~~i~l~~l~~~~~~-~~~~~~l~~~~~ 108 (123)
T cd08382 80 LGCVRIRANAVLPLKDT-GYQRLDLRKLKK 108 (123)
T ss_pred EeEEEEEHHHccccCCC-ccceeEeecCCC
Confidence 99999999998643321 134666655443
No 60
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.22 E-value=3.4e-11 Score=112.47 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=70.8
Q ss_pred eeEEEEEEEeeec------CCCCCeEEEEEe-----CCceeeeecccCCCCCccCcceeeEE--ecC-CCceEEEEEEec
Q 008313 53 AGIALLTLISAEM------KFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLL--ETN-GPHVARISVFET 118 (570)
Q Consensus 53 ~g~l~v~v~~~~l------~~~~dp~~~v~~-----g~~~~rT~vik~tLNP~Wne~~~~~~--~~~-~~~~l~~~v~D~ 118 (570)
.|.|.|+|++|+. .+..||||.+.+ +..++||+++++|+||+|||.+.|.. ..+ .+..+.++|||+
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 4799999999983 346799999876 34788999999999999999554432 111 335799999999
Q ss_pred ccCCcccccCCceeeeeeccc
Q 008313 119 NRLSKSNLEGYCEVDLLEFLT 139 (570)
Q Consensus 119 D~~~~~D~iG~~~i~l~ells 139 (570)
|.++++|+||++.+++.++..
T Consensus 106 d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 106 DKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCCCCCceEEEEEEeCCcccc
Confidence 999999999999999999653
No 61
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.22 E-value=3.7e-11 Score=107.33 Aligned_cols=99 Identities=22% Similarity=0.316 Sum_probs=78.5
Q ss_pred EEEEEEEeeec-----CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccC
Q 008313 55 IALLTLISAEM-----KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (570)
Q Consensus 55 ~l~v~v~~~~l-----~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG 128 (570)
.|.|+|++|++ ..+.|||+.++++++ ..+|+++++++||+|||.+.+.+ .....+.++|||++..+.+++||
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~--~~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLV--TPQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEe--CCCCEEEEEEEeCCCCCCCcEEE
Confidence 57889999985 336899999999887 89999999999999999555544 34467999999999999999999
Q ss_pred CceeeeeeccccCCccc---cchhhccCCC
Q 008313 129 YCEVDLLEFLTKDSDAD---SEVFDLLDPS 155 (570)
Q Consensus 129 ~~~i~l~ells~~~~~~---~~~F~l~D~~ 155 (570)
.+.+++.+++....... ..++.+..+.
T Consensus 81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 81 EASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred EEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 99999999875433222 2356665444
No 62
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.21 E-value=2.5e-11 Score=107.74 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=75.1
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccC
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG 128 (570)
|.|+|++|+. .+++|||+++.+++. +.||+++++++||+|||.+.+.+.. ....+.+.|||++.++++|+||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEE
Confidence 6788888882 447899999998764 5799999999999999944444322 3467999999999999999999
Q ss_pred CceeeeeeccccCCccccchhhccCCCC
Q 008313 129 YCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 129 ~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
.+.+++.++...... ...|+.+...+.
T Consensus 81 ~~~~~~~~~~~~~~~-~~~W~~L~~~~~ 107 (121)
T cd04054 81 KVSLTREVISAHPRG-IDGWMNLTEVDP 107 (121)
T ss_pred EEEEcHHHhccCCCC-CCcEEECeeeCC
Confidence 999998886542221 145777754333
No 63
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.21 E-value=4.3e-11 Score=104.41 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=63.1
Q ss_pred EEEEEEeee-cCCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEec-------ccCC
Q 008313 56 ALLTLISAE-MKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFET-------NRLS 122 (570)
Q Consensus 56 l~v~v~~~~-l~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~-------D~~~ 122 (570)
|.|+|.+|+ +...+||||.+.+. ...+||+++++|+||+|||.+.+.+ .....+.+.|||+ |..+
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l--~~s~~L~~~v~d~~~~~~~~d~~~ 78 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL--EGSQTLRILCYEKCYSKVKLDGEG 78 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe--CCCCEEEEEEEEcccccccccccC
Confidence 467888887 45578999999763 2468999999999999999554444 4567899999998 6778
Q ss_pred cccccCCceeeeee
Q 008313 123 KSNLEGYCEVDLLE 136 (570)
Q Consensus 123 ~~D~iG~~~i~l~e 136 (570)
+||.+|.+.+.+.-
T Consensus 79 ~d~~~G~g~i~Ld~ 92 (118)
T cd08686 79 TDAIMGKGQIQLDP 92 (118)
T ss_pred cccEEEEEEEEECH
Confidence 99999888777653
No 64
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.20 E-value=6.5e-11 Score=105.89 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=69.5
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
.+++|+|++|+. .+++|||+++..+.+.+||+++++++||+|||.+.+... +....+.++|||++.++ +|+|
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~~~~-d~~l 80 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSNLLC-DEFL 80 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECCCCC-CCce
Confidence 589999999982 347899999999999999999999999999995544333 24567999999999875 7999
Q ss_pred CCceeeeeec
Q 008313 128 GYCEVDLLEF 137 (570)
Q Consensus 128 G~~~i~l~el 137 (570)
|.+.+++.++
T Consensus 81 G~~~~~l~~~ 90 (126)
T cd04046 81 GQATLSADPN 90 (126)
T ss_pred EEEEEecccC
Confidence 9999999874
No 65
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=2.7e-11 Score=109.30 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=81.3
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCc-------eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCC
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQ-------TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLS 122 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~-------~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~ 122 (570)
|+|+|++|+. ..++|||+.+.++.. .++|+++++|+||+|||.+.|.+.. ....+.++|||+|.++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRLT 80 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCCC
Confidence 7889999982 347899999998654 5799999999999999955554432 2457999999999999
Q ss_pred cccccCCceeeeeeccccCCcc---c-cchhhccCCCCchhHHHHH
Q 008313 123 KSNLEGYCEVDLLEFLTKDSDA---D-SEVFDLLDPSSSNKIVGKI 164 (570)
Q Consensus 123 ~~D~iG~~~i~l~ells~~~~~---~-~~~F~l~D~~~~GkIl~e~ 164 (570)
++|+||.+.+++.++....... . ..||.+....+.++..+++
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l 126 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHL 126 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEE
Confidence 9999999999999987543321 2 5788877554444433333
No 66
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.19 E-value=5e-11 Score=106.69 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEec--CCCceEEEEEEecccCCcccccCCceeeeeeccccCCc
Q 008313 66 KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLET--NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD 143 (570)
Q Consensus 66 ~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~--~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~ 143 (570)
..++|||+.+.++...+||+++++++||+|||.+.+.+.. .....+.++|||++..+++|+||.+.+++.++......
T Consensus 12 ~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~ 91 (127)
T cd08373 12 KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLL 91 (127)
T ss_pred CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCce
Confidence 4478999999999999999999999999999966555533 24567999999999999999999999999998754332
Q ss_pred cccchhhccCCCCc
Q 008313 144 ADSEVFDLLDPSSS 157 (570)
Q Consensus 144 ~~~~~F~l~D~~~~ 157 (570)
..++.+.++++.
T Consensus 92 --~~~~~L~~~~~~ 103 (127)
T cd08373 92 --EVTEPLLDSNGR 103 (127)
T ss_pred --EEEEeCcCCCCC
Confidence 557788776543
No 67
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.19 E-value=5.2e-11 Score=107.60 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=72.4
Q ss_pred eeeEEEEEEEeee-c-----CCCCCeEEEEEeC-------CceeeeecccCCCCCccCcceeeEEecC----CCceEEEE
Q 008313 52 FAGIALLTLISAE-M-----KFKDKWLACVSLG-------EQTCRTAISDNTDKPIWNSEKKLLLETN----GPHVARIS 114 (570)
Q Consensus 52 ~~g~l~v~v~~~~-l-----~~~~dp~~~v~~g-------~~~~rT~vik~tLNP~Wne~~~~~~~~~----~~~~l~~~ 114 (570)
..+.|.|+|++|+ + ....|||+.|.+. ...+||+++++|+||+|||.+.+.+... ....+.++
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 3468999999998 2 3478999999874 3578999999999999999666554331 34579999
Q ss_pred EEecccCCcccccCCceeeeeeccc
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLT 139 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells 139 (570)
|||+|+++++++||.+.+++.++..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999999999999999999753
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.18 E-value=5e-11 Score=106.55 Aligned_cols=101 Identities=11% Similarity=0.122 Sum_probs=77.8
Q ss_pred ccceeeEEEEEEEeeec------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEEEE
Q 008313 49 EEDFAGIALLTLISAEM------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISV 115 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v 115 (570)
-....+.|.|+|++|+. ...+|||+.+.+. ...+||+++++++||+|||.+.|.+... ....+.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 34445789999999983 3578999999874 4788999999999999999666655332 235799999
Q ss_pred EecccC--CcccccCCceeeeeeccccCCccccchhhc
Q 008313 116 FETNRL--SKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 116 ~D~D~~--~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
||++.+ +++++||.+.+++.++...... ..||.+
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~--~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGF--TQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCc--cceEEC
Confidence 999986 7899999999999997543322 445544
No 69
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.18 E-value=7.6e-11 Score=105.05 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=74.4
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccC-CCCCccCcceeeEEecC---CCceEEEEEEecccCCc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDN-TDKPIWNSEKKLLLETN---GPHVARISVFETNRLSK 123 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~-tLNP~Wne~~~~~~~~~---~~~~l~~~v~D~D~~~~ 123 (570)
|.|.|+|++|+. ..+.|||+.++++.+.++|+++++ ++||+||+.+.|.+... ....+.++|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 578999999983 347899999999999999999885 99999999666655442 24579999999999999
Q ss_pred ccccCCceeeeeeccccCC
Q 008313 124 SNLEGYCEVDLLEFLTKDS 142 (570)
Q Consensus 124 ~D~iG~~~i~l~ells~~~ 142 (570)
+++||.+.+++.+++..+.
T Consensus 81 d~~iG~~~i~l~~l~~~~~ 99 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGV 99 (124)
T ss_pred CCeEEEEEEEhHHhhhCCC
Confidence 9999999999999875443
No 70
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.18 E-value=5.6e-11 Score=106.62 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=71.6
Q ss_pred cceeeEEEEEEEeeec------C-CCCCeEEEEEeC---CceeeeecccCCCCCccCcceee-EEecC--CCceEEEEEE
Q 008313 50 EDFAGIALLTLISAEM------K-FKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKL-LLETN--GPHVARISVF 116 (570)
Q Consensus 50 ~~~~g~l~v~v~~~~l------~-~~~dp~~~v~~g---~~~~rT~vik~tLNP~Wne~~~~-~~~~~--~~~~l~~~v~ 116 (570)
..-.+.|.|+|++|+. . +..||||.+.+. ....||+++++++||+|||.+.| .++.. ....+.+.||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 3344699999999983 2 567999999874 46779999999999999995555 23221 3346999999
Q ss_pred ecccCCcccccCCceeeeeecc
Q 008313 117 ETNRLSKSNLEGYCEVDLLEFL 138 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~ell 138 (570)
|+|+++++|+||++.+++.++-
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~ 113 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGAD 113 (128)
T ss_pred EcCCCCCCceeEEEEEeccccC
Confidence 9999999999999999999963
No 71
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.18 E-value=3.5e-11 Score=107.79 Aligned_cols=98 Identities=12% Similarity=0.198 Sum_probs=75.3
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccC-------
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL------- 121 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~------- 121 (570)
.|+|+|++|+. ..++|||+.+.++...++|+++++|+||+|||.+.+.+.. ....+.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~-~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN-SSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC-CCCEEEEEEEECCCCcccccce
Confidence 47888998872 3467999999999999999999999999999955554432 345799999999963
Q ss_pred ----CcccccCCceeeeeeccccCCccccchhhccCCCCc
Q 008313 122 ----SKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (570)
Q Consensus 122 ----~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~ 157 (570)
+.+|+||.+.+++.++.. .. ..|+.+....+.
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~--~~--~~w~~L~~~~~~ 116 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSG--EM--DVWYNLEKRTDK 116 (127)
T ss_pred eccccCCCcceEEEEEhHHccC--CC--CeEEECccCCCC
Confidence 578999999999988531 11 467777654433
No 72
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.18 E-value=1e-10 Score=105.94 Aligned_cols=111 Identities=16% Similarity=0.168 Sum_probs=79.2
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEE-ec-----C---CCceEEEEEEecc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLL-ET-----N---GPHVARISVFETN 119 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~-~~-----~---~~~~l~~~v~D~D 119 (570)
.|+|.|.+|+. ....|||+.+.++....||+++++|+||+|||.+.+.. .. + ....+.++|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 47899999983 44789999999999999999999999999999555432 11 0 1246899999999
Q ss_pred cCCcccccCCceeeeeeccccC-Cccc-cchhhccCCCCchhHHHHHhhhc
Q 008313 120 RLSKSNLEGYCEVDLLEFLTKD-SDAD-SEVFDLLDPSSSNKIVGKISLSC 168 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ells~~-~~~~-~~~F~l~D~~~~GkIl~e~l~~l 168 (570)
.++++|+||++.+....-+... .... .+||.+... |...++++.++
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~~~~Geil~~~ 129 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---GQSAGELLAAF 129 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC---CCchhheeEEe
Confidence 9999999999987433223222 1222 678888633 23345555544
No 73
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=9.5e-11 Score=104.94 Aligned_cols=117 Identities=22% Similarity=0.342 Sum_probs=101.2
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH-hCCcchHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEEL 220 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~~~~~~ei~~~ 220 (570)
...|.++|++++|+| +...++++++ .+...+ +..++..+|.++.|.|++++|...+.. ++...+.+++..+
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~e---i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEE---ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHH---HHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 678999999999998 4445667754 555666 889999999999999999999999866 7888899999999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhccccCch
Q 008313 221 FKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 270 (570)
Q Consensus 221 F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~dl 270 (570)
|+.+|.|++|+||+.+|+.++.++++...+ ..+.++|.++|.+++.
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeLgenltD----~El~eMIeEAd~d~dg 157 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKELGENLTD----EELMEMIEEADRDGDG 157 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHhCccccH----HHHHHHHHHhcccccc
Confidence 999999999999999999999999998776 5688889888877664
No 74
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.17 E-value=1.8e-11 Score=124.83 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=78.3
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEe-----CCceeeeecccCCCCCccCcceeeEE-ecCCCceEEEEEEecccC
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLL-ETNGPHVARISVFETNRL 121 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~-----g~~~~rT~vik~tLNP~Wne~~~~~~-~~~~~~~l~~~v~D~D~~ 121 (570)
..|.|+|..|+. .+-|||||.+++ +....||++|+.||||+|||++.+.+ +.+-++.|.++|||||+-
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 688899998883 556789999886 34667899999999999999776654 566778899999999999
Q ss_pred CcccccCCceeeeeeccccCCccccchhhccCC
Q 008313 122 SKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 122 ~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
+++|+||...+.++|++.... .-||.++..
T Consensus 260 sRNDFMGslSFgisEl~K~p~---~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAPV---DGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhhcch---hhHHHHhhh
Confidence 999999999999999754322 345655543
No 75
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.16 E-value=1.2e-10 Score=108.45 Aligned_cols=86 Identities=17% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCceeeeeeccccCCcccc
Q 008313 68 KDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADS 146 (570)
Q Consensus 68 ~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~ 146 (570)
++|||+.+.++. ++.||+++++++||+|||.+.+.+.. ....+.|.|+|+|.++ +|+||.+.+++.++...... .
T Consensus 57 ~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~-~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~--~ 132 (158)
T cd04015 57 TSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAH-YASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPV--E 132 (158)
T ss_pred CcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccC-CCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCc--c
Confidence 479999999986 55799999999999999966555433 3457999999999886 58999999999997653332 5
Q ss_pred chhhccCCCCc
Q 008313 147 EVFDLLDPSSS 157 (570)
Q Consensus 147 ~~F~l~D~~~~ 157 (570)
.|+.+.+.++.
T Consensus 133 ~w~~L~~~~~~ 143 (158)
T cd04015 133 GWLPILDSNGK 143 (158)
T ss_pred eEEECcCCCCC
Confidence 78888876443
No 76
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.16 E-value=1.1e-10 Score=104.05 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=72.2
Q ss_pred cccceeeEEEEEEEeeec------CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEE-e-cC-CCceEEE
Q 008313 48 NEEDFAGIALLTLISAEM------KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLL-E-TN-GPHVARI 113 (570)
Q Consensus 48 ~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~-~-~~-~~~~l~~ 113 (570)
.-....+.|.|+|++|+. ....|||+.+.+.. .++||+++++++||+|||.+.|.+ . .+ ....+.|
T Consensus 10 ~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 10 WYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 344556799999999983 34689999998753 678999999999999999554432 2 11 2457999
Q ss_pred EEEecccCCcccccCCceeeeeec
Q 008313 114 SVFETNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 114 ~v~D~D~~~~~D~iG~~~i~l~el 137 (570)
+|||+|.++++++||.+.+++.+.
T Consensus 90 ~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 90 TVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred EEEeCCCCCCCcEeeEEEEecccc
Confidence 999999999999999999999983
No 77
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.15 E-value=8.3e-11 Score=104.93 Aligned_cols=101 Identities=26% Similarity=0.242 Sum_probs=80.6
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCC-ceeeeeccc-CCCCCccCcceeeEEecCC----CceEEEEEEecccCCc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGE-QTCRTAISD-NTDKPIWNSEKKLLLETNG----PHVARISVFETNRLSK 123 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~-~~~rT~vik-~tLNP~Wne~~~~~~~~~~----~~~l~~~v~D~D~~~~ 123 (570)
|+|+|++|+. ..+.|||++++++. ...+|++++ +++||+|||.+.|.+.... ...+.|+|||++.+++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 6788999883 34789999999988 889999985 5899999996666554432 4679999999999999
Q ss_pred ccccCCceeeeeeccccCCcc--c-cchhhccCCCC
Q 008313 124 SNLEGYCEVDLLEFLTKDSDA--D-SEVFDLLDPSS 156 (570)
Q Consensus 124 ~D~iG~~~i~l~ells~~~~~--~-~~~F~l~D~~~ 156 (570)
+|+||.+.+++.+++...... . ..+|.+.++++
T Consensus 82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g 117 (125)
T cd04051 82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG 117 (125)
T ss_pred CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC
Confidence 999999999999987655432 2 46778877654
No 78
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.15 E-value=1.4e-10 Score=106.73 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCCCCeEEEEEe-----CCceeeeecccCCCCCccCcceeeEEecC--------CCceEEEEEEecccC-CcccccCCce
Q 008313 66 KFKDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLLETN--------GPHVARISVFETNRL-SKSNLEGYCE 131 (570)
Q Consensus 66 ~~~~dp~~~v~~-----g~~~~rT~vik~tLNP~Wne~~~~~~~~~--------~~~~l~~~v~D~D~~-~~~D~iG~~~ 131 (570)
.+++||||.+.+ +.+..||.++++|+||+|||.+.|.+... ..+.+.++|||++.+ +++|+||.+.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 457899999975 34789999999999999999666555332 134699999999997 5799999999
Q ss_pred eeeeeccccCCccccchhhccCCCC
Q 008313 132 VDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 132 i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
+++..+...... ..++++++..+
T Consensus 102 i~L~~l~~~~~~--~~~~~L~~~~k 124 (155)
T cd08690 102 VKLEPLETKCEI--HESVDLMDGRK 124 (155)
T ss_pred EEcccccccCcc--eEEEEhhhCCC
Confidence 999997554443 45777776443
No 79
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.15 E-value=8.8e-11 Score=103.94 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=73.7
Q ss_pred eeEEEEEEEeeec-----CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecC-CCceEEEEEEecccC
Q 008313 53 AGIALLTLISAEM-----KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETN-GPHVARISVFETNRL 121 (570)
Q Consensus 53 ~g~l~v~v~~~~l-----~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~-~~~~l~~~v~D~D~~ 121 (570)
.+.|.|+|++|+. .+.+||||.+.+.. ...||+++++++||+|||.|.|.+..+ ....+.++|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 4789999999984 34679999998752 466999999999999999665554322 334688999999987
Q ss_pred C-cccccCCceeeeeeccccCCccccchhh
Q 008313 122 S-KSNLEGYCEVDLLEFLTKDSDADSEVFD 150 (570)
Q Consensus 122 ~-~~D~iG~~~i~l~ells~~~~~~~~~F~ 150 (570)
+ .+|+||.+.+++.++...+.. ..||.
T Consensus 91 ~~~~~~lG~~~i~l~~~~~~~~~--~~Wy~ 118 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVNQKEI--SGWYY 118 (119)
T ss_pred cCCCEEEEEEEecHHHhccCccc--cceEe
Confidence 6 478999999999998643322 44554
No 80
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.15 E-value=4.2e-11 Score=109.62 Aligned_cols=94 Identities=23% Similarity=0.470 Sum_probs=79.5
Q ss_pred cchhhccCCCCchhH-HHHHhhhcCCC---CChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI-VGKISLSCSVE---DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~l~~l~~~---~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F 221 (570)
.++++.+|. +.+.| +.+++..+... ....++ ++.+|+.||.|+||+|+..|+..+++.+|..++++++..++
T Consensus 59 ~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee---l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll 134 (160)
T COG5126 59 NKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE---LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLL 134 (160)
T ss_pred HHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH---HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHH
Confidence 678888887 77777 66655544321 233444 99999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcCHHHHHHHHHh
Q 008313 222 KAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 222 ~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
+.+|.|+||+|+++||.+.+..
T Consensus 135 ~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 135 KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999998754
No 81
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.15 E-value=7.4e-11 Score=102.77 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=66.3
Q ss_pred EEEEEEEeeec-----CCCCCeEEEEEeCC------ceeeeecccCCCCCccCcceeeEEe----cCCCceEEEEEEecc
Q 008313 55 IALLTLISAEM-----KFKDKWLACVSLGE------QTCRTAISDNTDKPIWNSEKKLLLE----TNGPHVARISVFETN 119 (570)
Q Consensus 55 ~l~v~v~~~~l-----~~~~dp~~~v~~g~------~~~rT~vik~tLNP~Wne~~~~~~~----~~~~~~l~~~v~D~D 119 (570)
++.+++.+..+ .+++|||+++.... ..+||+++++++||+||+ +.+.+. .+....|.++|||+|
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn~-f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP-FTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceEE-EEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 56777777665 34789999998643 468999999999999994 444322 122568999999999
Q ss_pred cCCcccccCCceeeeeecc
Q 008313 120 RLSKSNLEGYCEVDLLEFL 138 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ell 138 (570)
.++++|+||.+.+++.+++
T Consensus 81 ~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 81 SSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCCcEEEEEEEEHHHHh
Confidence 9999999999999999976
No 82
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.14 E-value=1.3e-10 Score=103.39 Aligned_cols=91 Identities=15% Similarity=0.182 Sum_probs=73.5
Q ss_pred ccccceeeEEEEEEEeeec------CCCCCeEEEEEeC------CceeeeecccCCCCCccCcceeeEEecC--CCceEE
Q 008313 47 LNEEDFAGIALLTLISAEM------KFKDKWLACVSLG------EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVAR 112 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g------~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~ 112 (570)
+.-....+.|.|+|++|+. .+.+||||.+.+- ...+||+++++++||+|||.|.|.+..+ .+..|.
T Consensus 7 L~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 7 LRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred EEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 3344455789999999983 3467999998852 2478999999999999999665554332 456799
Q ss_pred EEEEecccCCcccccCCceeeeeec
Q 008313 113 ISVFETNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 113 ~~v~D~D~~~~~D~iG~~~i~l~el 137 (570)
++|||.|+++++|+||.+.+++.++
T Consensus 87 ~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 87 VDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred EEEEeCCCCCceeEEEEEEEEhhhc
Confidence 9999999999999999999999997
No 83
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.14 E-value=1.2e-10 Score=105.85 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=77.9
Q ss_pred EEEEEEeee-c----CCCCCeEEEEEeC----CceeeeecccCCCCCccCcceeeEEecC---------------CCceE
Q 008313 56 ALLTLISAE-M----KFKDKWLACVSLG----EQTCRTAISDNTDKPIWNSEKKLLLETN---------------GPHVA 111 (570)
Q Consensus 56 l~v~v~~~~-l----~~~~dp~~~v~~g----~~~~rT~vik~tLNP~Wne~~~~~~~~~---------------~~~~l 111 (570)
|.|.|++|+ + ..+.|||+.+.++ ..+.||+++++++||+|||.+.|.+... ....+
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 457777777 2 3478999999998 7889999999999999999655544332 34579
Q ss_pred EEEEEecccCCcccccCCceeeeeeccccCCccccchhhccCCCCc
Q 008313 112 RISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (570)
Q Consensus 112 ~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~ 157 (570)
.++|||++.++++++||.+.+++.++...... ..||.+......
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~--~~W~~L~~~~~~ 124 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSH--QAWYFLQPREAP 124 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcc--cceEecCCcCCC
Confidence 99999999999999999999999997643332 567777665533
No 84
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.13 E-value=2.5e-10 Score=102.11 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=74.4
Q ss_pred eEEEEEEEeeec---CCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCC
Q 008313 54 GIALLTLISAEM---KFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (570)
Q Consensus 54 g~l~v~v~~~~l---~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~ 129 (570)
..|+|.|++|+. ...+|||+.+.+++ ++.||++ ++++||.|||.+.|.........+.+.|||++..+++|+||.
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 82 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAE 82 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEE
Confidence 468999999984 33679999999987 5579997 569999999944443222122468899999999999999999
Q ss_pred ceeeeeeccccCCccccchhhccCC
Q 008313 130 CEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 130 ~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
+.+++.++...... ..||.+...
T Consensus 83 v~i~l~~l~~~~~~--~~W~~L~~~ 105 (126)
T cd08400 83 VTVQLSKLQNGQET--DEWYPLSSA 105 (126)
T ss_pred EEEEHhHccCCCcc--cEeEEcccC
Confidence 99999986543322 467777654
No 85
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.13 E-value=2.2e-10 Score=102.32 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=74.4
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCC---ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSN 125 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~---~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D 125 (570)
.+.|+|++|+. .+++|||+.+..+. ..+||+++++++||+|||.+.+.+.......+.++|||+|.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 46788888882 45789999998653 5789999999999999995555544433567999999999999999
Q ss_pred ccCCceeeeeeccccC-Cccccchhhcc
Q 008313 126 LEGYCEVDLLEFLTKD-SDADSEVFDLL 152 (570)
Q Consensus 126 ~iG~~~i~l~ells~~-~~~~~~~F~l~ 152 (570)
+||.+.+++.+..... ......|+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 9999999998864332 11114566663
No 86
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.12 E-value=2.4e-10 Score=101.85 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=71.0
Q ss_pred eeeEEEEEEEeeec------CCCCCeEEEEEe---CCceeeeecccCCCCCccCcceeeEE-ec--CCCceEEEEEEecc
Q 008313 52 FAGIALLTLISAEM------KFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLL-ET--NGPHVARISVFETN 119 (570)
Q Consensus 52 ~~g~l~v~v~~~~l------~~~~dp~~~v~~---g~~~~rT~vik~tLNP~Wne~~~~~~-~~--~~~~~l~~~v~D~D 119 (570)
..+.|.|+|++|+. ..+.|||+.+.+ +....||+++++++||+|||.+.|.. .. .....+.++|||+|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 34689999999983 347899999987 45778999999999999999554431 11 13356999999999
Q ss_pred cCCcccccCCceeeeeeccc
Q 008313 120 RLSKSNLEGYCEVDLLEFLT 139 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ells 139 (570)
+++++|+||.+.+++.++..
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 94 RFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred CCcCCcEeeEEEEecccccC
Confidence 99999999999999999753
No 87
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.12 E-value=9.5e-11 Score=102.43 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=72.4
Q ss_pred cCCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCceeeeeeccccCCc
Q 008313 65 MKFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD 143 (570)
Q Consensus 65 l~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~ 143 (570)
+.+++|||+.+.++. ...+|+++++++||+|||.+.+.+.......+.|.|+|++.+ ++|+||.+.+++.+++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence 455789999999987 467999999999999999666666543456799999999999 899999999999998653222
Q ss_pred cccchhhccCCCCchhH
Q 008313 144 ADSEVFDLLDPSSSNKI 160 (570)
Q Consensus 144 ~~~~~F~l~D~~~~GkI 160 (570)
...||.+.+ ...|+|
T Consensus 88 -~~~w~~L~~-~~~G~i 102 (111)
T cd04052 88 -GQQWFPLSG-NGQGRI 102 (111)
T ss_pred -cceeEECCC-CCCCEE
Confidence 146777765 344543
No 88
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.11 E-value=1.6e-10 Score=104.86 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=75.6
Q ss_pred eeeEEEEEEEeeec------CCCCCeEEEEEeC--C---ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEec
Q 008313 52 FAGIALLTLISAEM------KFKDKWLACVSLG--E---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFET 118 (570)
Q Consensus 52 ~~g~l~v~v~~~~l------~~~~dp~~~v~~g--~---~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~ 118 (570)
..+.|.|+|++|+. ...+||||.+.+. . ...||+|+++++||+|||.|.|.+... ....+.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 34689999999983 3477999999873 2 357899999999999999665554322 344689999999
Q ss_pred ccCCcccccCCceeeeeeccccCCccccchhhccCC
Q 008313 119 NRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 119 D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
|.++++|+||++.+++.. . ... ...|+++.+.
T Consensus 93 d~~~~~~~iG~~~~~~~~-~-~~~--~~~w~~l~~~ 124 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA-S-GSG--GHHWKEVCNP 124 (136)
T ss_pred CCCCCCccEEEEEECCcC-C-Cch--HHHHHHHHhC
Confidence 999999999999999887 2 111 1567777664
No 89
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.11 E-value=2.6e-10 Score=100.10 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=74.3
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeC-CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccC
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEG 128 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g-~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG 128 (570)
++|+|++|+. .+..|||+.+..+ ...++|+++++++||+|||.+.+.+.......+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 4678888872 3467999999985 46789999999999999996665554434567999999999999999999
Q ss_pred CceeeeeeccccCCccccchhhccC
Q 008313 129 YCEVDLLEFLTKDSDADSEVFDLLD 153 (570)
Q Consensus 129 ~~~i~l~ells~~~~~~~~~F~l~D 153 (570)
++.+++.++...... ..++.+..
T Consensus 81 ~~~~~l~~l~~~~~~--~~~~~L~~ 103 (115)
T cd04040 81 SAYIDLSDLEPEETT--ELTLPLDG 103 (115)
T ss_pred EEEEEHHHcCCCCcE--EEEEECcC
Confidence 999999997643222 34455543
No 90
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.11 E-value=2.1e-10 Score=101.89 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=72.8
Q ss_pred cccceeeEEEEEEEeeec-------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEE
Q 008313 48 NEEDFAGIALLTLISAEM-------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARI 113 (570)
Q Consensus 48 ~~~~~~g~l~v~v~~~~l-------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~ 113 (570)
.-+...+.|.|+|++|+. ....|||+.+.+. ....||+++++++||+|||.+.|.+... ....+.+
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 8 SYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 334456789999999983 2377999999762 1568999999999999999655554332 2457999
Q ss_pred EEEecccCCcccccCCceeeeeecc
Q 008313 114 SVFETNRLSKSNLEGYCEVDLLEFL 138 (570)
Q Consensus 114 ~v~D~D~~~~~D~iG~~~i~l~ell 138 (570)
+|||+|.++++++||.+.+++.++.
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred EEEeCCCCcCCceeeEEEEeccccc
Confidence 9999999999999999999999974
No 91
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.10 E-value=2.5e-10 Score=105.18 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=69.9
Q ss_pred cceeeEEEEEEEeeec------CCCCCeEEEEEeCC-----------------------------ceeeeecccCCCCCc
Q 008313 50 EDFAGIALLTLISAEM------KFKDKWLACVSLGE-----------------------------QTCRTAISDNTDKPI 94 (570)
Q Consensus 50 ~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g~-----------------------------~~~rT~vik~tLNP~ 94 (570)
++..+.|.|+|++|+. .+.+|||+.+.++. .+++|+++++++||+
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~ 103 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV 103 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence 4455899999999983 45789999998742 358999999999999
Q ss_pred cCcceeeEEecCCCceEEEEEEecccCCcccccCCceeeeeecc
Q 008313 95 WNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 138 (570)
Q Consensus 95 Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ell 138 (570)
|||.+.|.+.......+.++|||+| +++||.+.+++.++.
T Consensus 104 WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 104 WNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred cccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 9996666554434567999999998 799999999999976
No 92
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.10 E-value=3.8e-10 Score=101.76 Aligned_cols=99 Identities=15% Similarity=0.286 Sum_probs=77.4
Q ss_pred eeeEEEEEEEeeec----C------------CCCCeEEEEEeCCce-eeeecccCCCCCccCcceeeEEecCCCceEEEE
Q 008313 52 FAGIALLTLISAEM----K------------FKDKWLACVSLGEQT-CRTAISDNTDKPIWNSEKKLLLETNGPHVARIS 114 (570)
Q Consensus 52 ~~g~l~v~v~~~~l----~------------~~~dp~~~v~~g~~~-~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~ 114 (570)
++|.|+|+|+.|+. . +..|||+.+.++.+. .+|+++++|+||.|||.+.+.+ .....+.|.
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v--~~~~~l~~~ 79 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEV--HNGRNLELT 79 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEc--CCCCEEEEE
Confidence 35899999999973 1 357999999998754 6999999999999999554444 345679999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccccchhhcc
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLL 152 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~ 152 (570)
|+|++.+++++++|.+.+++.++..........|+.+.
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE 117 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence 99999999999999999999997753111114566664
No 93
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.09 E-value=2.4e-10 Score=103.11 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=77.5
Q ss_pred cccceeeEEEEEEEeeec------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 48 NEEDFAGIALLTLISAEM------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 48 ~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
.-....+.|.|+|++|+. .+.+||||.+.+. ....||+++++++||+|||.+.|.+... ....+.|+
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 344556899999999983 3467999999874 2578999999999999999555544322 24579999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccccchhhccC
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLD 153 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D 153 (570)
|||+|..+++|+||.+.+++.. .. ++ ...|++++.
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~-~~-~~--~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA-KG-ER--LRHWLDCLK 121 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC-CC-ch--HHHHHHHHh
Confidence 9999999999999999999875 11 11 156777764
No 94
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.07 E-value=3e-10 Score=102.89 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=68.9
Q ss_pred cccceeeEEEEEEEeeec------CCCCCeEEEEEe---CCc--eeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 48 NEEDFAGIALLTLISAEM------KFKDKWLACVSL---GEQ--TCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 48 ~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~---g~~--~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
.-....+.|.|+|++|+. .+.+||||.+.+ +.. ..||.|+++|+||+|||.|.|.++.. .+..+.|+
T Consensus 9 ~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 9 SYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred EEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 334445689999999993 457899999987 232 55899999999999999665655332 34569999
Q ss_pred EEecccCCcccccCCceeeee
Q 008313 115 VFETNRLSKSNLEGYCEVDLL 135 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ 135 (570)
|+|+|.++++|.||++.+...
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCC
Confidence 999999999999998888654
No 95
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.07 E-value=4.7e-10 Score=101.59 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=67.1
Q ss_pred EEEEEEEeeec-----CCCCCeEEEEEeC-------------CceeeeecccCCCCCcc-CcceeeEEecCCCceEEEEE
Q 008313 55 IALLTLISAEM-----KFKDKWLACVSLG-------------EQTCRTAISDNTDKPIW-NSEKKLLLETNGPHVARISV 115 (570)
Q Consensus 55 ~l~v~v~~~~l-----~~~~dp~~~v~~g-------------~~~~rT~vik~tLNP~W-ne~~~~~~~~~~~~~l~~~v 115 (570)
+..|.+++|+. .++.|||+.+.+. .+.+||+++++++||+| ||.+.|.+ .....+.++|
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v--~~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVG--LPTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEc--CCCCEEEEEE
Confidence 35677777772 3578999999873 24789999999999999 99555544 3446799999
Q ss_pred EecccCCc---ccccCCceeeeeeccccCCc
Q 008313 116 FETNRLSK---SNLEGYCEVDLLEFLTKDSD 143 (570)
Q Consensus 116 ~D~D~~~~---~D~iG~~~i~l~ells~~~~ 143 (570)
||++..++ +|+||.+.+++.+++.....
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~ 110 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAI 110 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccC
Confidence 99876554 69999999999998755433
No 96
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.07 E-value=4.6e-10 Score=99.70 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=74.9
Q ss_pred ccccceeeEEEEEEEeeec-------CCCCCeEEEEEe---CCceeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 47 LNEEDFAGIALLTLISAEM-------KFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l-------~~~~dp~~~v~~---g~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
+..+...+.+.|+|++|+. ....||||.+.+ +....+|+++++++||+|||.+.|.+... ....+.++
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~ 86 (123)
T cd08390 7 VQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLS 86 (123)
T ss_pred EEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEE
Confidence 3445556789999999983 225699999986 34678999999999999999555554332 23579999
Q ss_pred EEecccCCcccccCCceeeeeeccccC
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKD 141 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~ 141 (570)
|||++..+++++||.+.+++.++....
T Consensus 87 v~d~~~~~~~~~iG~~~i~L~~l~~~~ 113 (123)
T cd08390 87 VYDVDRFSRHCIIGHVLFPLKDLDLVK 113 (123)
T ss_pred EEECCcCCCCcEEEEEEEeccceecCC
Confidence 999999999999999999999976543
No 97
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.06 E-value=1.5e-10 Score=106.92 Aligned_cols=98 Identities=17% Similarity=0.354 Sum_probs=79.9
Q ss_pred cchhhccCCCCchhH-HHHH---hhhcCCCCChhh-HHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI-VGKI---SLSCSVEDPIET-EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 220 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~---l~~l~~~~~t~~-e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~ 220 (570)
..++..+|.+++|.| +.++ +........... ....++++|+.+|.|++|+|+.+||..+|..+|.+.+.+++..+
T Consensus 47 ~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~m 126 (151)
T KOG0027|consen 47 RDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEM 126 (151)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHH
Confidence 778999999999998 4443 332221111111 12349999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHh
Q 008313 221 FKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 221 F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
++.+|.|+||.|+|+||..+|..
T Consensus 127 i~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 127 IREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999998853
No 98
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.06 E-value=2.2e-10 Score=138.68 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=88.5
Q ss_pred cceeeEEEEEEEeeec----CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCC-CceEEEEEEecccCCc
Q 008313 50 EDFAGIALLTLISAEM----KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNG-PHVARISVFETNRLSK 123 (570)
Q Consensus 50 ~~~~g~l~v~v~~~~l----~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~-~~~l~~~v~D~D~~~~ 123 (570)
+.+.|.|.|+|++|+. .+++|||+++++|.+ ..||+|+++|.||+|||.|.+.++... ..++.++|||+|.|++
T Consensus 1976 ~~~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred hhCCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 4566999999999985 458899999999965 779999999999999997777777642 3569999999999955
Q ss_pred ccccCCceeeeeeccccCCccccchhhccCC-CCchh
Q 008313 124 SNLEGYCEVDLLEFLTKDSDADSEVFDLLDP-SSSNK 159 (570)
Q Consensus 124 ~D~iG~~~i~l~ells~~~~~~~~~F~l~D~-~~~Gk 159 (570)
|.||++++++.++...... ..+|.+.+. +++|+
T Consensus 2056 -d~~G~~~i~l~~vv~~~~~--~~~~~L~~~~~k~G~ 2089 (2102)
T PLN03200 2056 -SSLGKVTIQIDRVVMEGTY--SGEYSLNPESNKDGS 2089 (2102)
T ss_pred -CCCceEEEEHHHHhcCcee--eeeeecCcccccCCC
Confidence 6999999999998875555 678999874 35664
No 99
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.04 E-value=5.6e-10 Score=99.57 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=75.8
Q ss_pred ccccceeeEEEEEEEeeec------CCCCCeEEEEEe---CCceeeeecccCCCCCccCcceeeE-EecC--CCceEEEE
Q 008313 47 LNEEDFAGIALLTLISAEM------KFKDKWLACVSL---GEQTCRTAISDNTDKPIWNSEKKLL-LETN--GPHVARIS 114 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~---g~~~~rT~vik~tLNP~Wne~~~~~-~~~~--~~~~l~~~ 114 (570)
+.-....+.|.|+|++|+. ++.+||||.+.+ ..+..||+++++ +||+|||.|.|. +... .+..|.+.
T Consensus 9 l~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~ 87 (124)
T cd08389 9 FEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFR 87 (124)
T ss_pred EEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEE
Confidence 3344555789999999983 467899987654 246789999987 999999955553 3221 45679999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccccchhhc
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
|+|+|.++++|++|++.+++.++...... ..|+.+
T Consensus 88 V~~~~~~~~~~~lG~~~i~L~~l~~~~~~--~~w~~L 122 (124)
T cd08389 88 LYGVERMRKERLIGEKVVPLSQLNLEGET--TVWLTL 122 (124)
T ss_pred EEECCCcccCceEEEEEEeccccCCCCCc--eEEEeC
Confidence 99999999999999999999997432222 455544
No 100
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.03 E-value=5.9e-10 Score=100.27 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=79.8
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEec-CCCceEEEEEEecccC
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLET-NGPHVARISVFETNRL 121 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~-~~~~~l~~~v~D~D~~ 121 (570)
+.|+|+|++|+. ....|||+.+.+. ...+||+++++++||.|||.+.+.+.. +....+.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 789999999983 3367999999885 378899999999999999965554432 1346799999999999
Q ss_pred CcccccCCceeeeeeccccCCccccchhhccCCC
Q 008313 122 SKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (570)
Q Consensus 122 ~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~ 155 (570)
++++++|.+.+++.+++.. . ...||++.+++
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~--~~~w~~L~~~~ 123 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-P--VDGWYKLLNQE 123 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-c--cCceEECcCcc
Confidence 9999999999999998743 1 15688888754
No 101
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.03 E-value=4.9e-10 Score=101.58 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=77.3
Q ss_pred cccceeeEEEEEEEeeec------CCCCCeEEEEEe--CC---ceeeeecccCCCCCccCcceeeEEecC--CCceEEEE
Q 008313 48 NEEDFAGIALLTLISAEM------KFKDKWLACVSL--GE---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARIS 114 (570)
Q Consensus 48 ~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~--g~---~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~ 114 (570)
.-....+.|.|+|++|+. ..+.||||.+++ ++ ..+||+++++++||+|||.+.|.+..+ .+..+.|+
T Consensus 9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 9 CYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 334455789999999983 447899999987 22 467999999999999999555544322 24579999
Q ss_pred EEecccCCcccccCCceeeeeeccccCCccccchhhccCC
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP 154 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~ 154 (570)
|||+|.++++|++|.+.+++.+. ..+ ...|++++..
T Consensus 89 v~d~~~~~~~~~lG~~~i~~~~~--~~~--~~~w~~~~~~ 124 (136)
T cd08405 89 VMDKDRLSRNDLIGKIYLGWKSG--GLE--LKHWKDMLSK 124 (136)
T ss_pred EEECCCCCCCcEeEEEEECCccC--Cch--HHHHHHHHhC
Confidence 99999999999999999999874 111 1456666543
No 102
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.02 E-value=6.6e-10 Score=100.70 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=70.2
Q ss_pred ccccceeeEEEEEEEeeec----C----CCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecC--CCceE
Q 008313 47 LNEEDFAGIALLTLISAEM----K----FKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVA 111 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l----~----~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l 111 (570)
++.....+.|.|.|++|+. . +.+||||.+.+.. ...||+++++++||+|||.+.|.+... .+..|
T Consensus 8 L~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L 87 (138)
T cd08407 8 ISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSV 87 (138)
T ss_pred EEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEE
Confidence 4444556789999999984 1 3479999998643 355899999999999999555544322 24569
Q ss_pred EEEEEecccCCcccccCCceeeeee
Q 008313 112 RISVFETNRLSKSNLEGYCEVDLLE 136 (570)
Q Consensus 112 ~~~v~D~D~~~~~D~iG~~~i~l~e 136 (570)
.|+|+|+|.++++|+||.+.+.+..
T Consensus 88 ~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 88 ELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEEEeCCCCcCcceeceEEecCcC
Confidence 9999999999999999999988864
No 103
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.01 E-value=6.8e-10 Score=100.60 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=75.2
Q ss_pred ccceeeEEEEEEEeeec------CCCCCeEEEEEeC--C---ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEE
Q 008313 49 EEDFAGIALLTLISAEM------KFKDKWLACVSLG--E---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISV 115 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g--~---~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v 115 (570)
-....|.|.|+|++|+. .+.+|||+.+.++ . ...+|+++++++||+|||.+.|.+... ....+.++|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 34455789999999983 4468999999874 2 467899999999999999555544322 234699999
Q ss_pred EecccCCcccccCCceeeeeeccccCCccccchhhccC
Q 008313 116 FETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLD 153 (570)
Q Consensus 116 ~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D 153 (570)
||+|.++++|+||.+.+++... ..+. ..|++++.
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~--~~W~~~~~ 123 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAEL--RHWSDMLA 123 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHH--HHHHHHHh
Confidence 9999999999999999998652 1111 45666654
No 104
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.01 E-value=7.9e-10 Score=100.13 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=66.0
Q ss_pred ceeeEEEEEEEeeec------CCCCCeEEEEEe--CC---ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEe
Q 008313 51 DFAGIALLTLISAEM------KFKDKWLACVSL--GE---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (570)
Q Consensus 51 ~~~g~l~v~v~~~~l------~~~~dp~~~v~~--g~---~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D 117 (570)
...|.|.|+|++|+. .+.+||||.+.+ +. .+.+|+++++|+||+|||.+.|.+..+ .+..+.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 344789999999983 347899999986 22 457999999999999999666655322 23469999999
Q ss_pred cccCCcccccCCceeee
Q 008313 118 TNRLSKSNLEGYCEVDL 134 (570)
Q Consensus 118 ~D~~~~~D~iG~~~i~l 134 (570)
+|..+++|+||.+.+..
T Consensus 91 ~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCCCcEEEEEEEcC
Confidence 99999999999876554
No 105
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.00 E-value=1e-09 Score=99.20 Aligned_cols=86 Identities=24% Similarity=0.213 Sum_probs=68.6
Q ss_pred cceeeEEEEEEEeeec------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEE
Q 008313 50 EDFAGIALLTLISAEM------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (570)
Q Consensus 50 ~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~ 116 (570)
....+.|+|+|++|+. ...+|||+.+.+. ....||+++++++||+|||.+.|.+..+ ....+.|+||
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~ 89 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV 89 (134)
T ss_pred cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 3445899999999983 3478999999873 2467999999999999999655544322 2346999999
Q ss_pred ecccCCcccccCCceeeee
Q 008313 117 ETNRLSKSNLEGYCEVDLL 135 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~ 135 (570)
|+|.++++|+||++.+++.
T Consensus 90 d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 90 DYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred ECCCCCCCceeEEEEECCC
Confidence 9999999999999999865
No 106
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.94 E-value=2.5e-09 Score=95.15 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=72.1
Q ss_pred cccceeeEEEEEEEeeec------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeE-Eec--CCCceEEE
Q 008313 48 NEEDFAGIALLTLISAEM------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLL-LET--NGPHVARI 113 (570)
Q Consensus 48 ~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~-~~~--~~~~~l~~ 113 (570)
...+..+.|.|+|++|+. ....|||+.+.+. ..+.||+++++++||+||+.+.|. +.. .....+.+
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 344455789999999983 3467999998862 357899999999999999955442 221 12457999
Q ss_pred EEEecccCCcccccCCceeeeeeccccC
Q 008313 114 SVFETNRLSKSNLEGYCEVDLLEFLTKD 141 (570)
Q Consensus 114 ~v~D~D~~~~~D~iG~~~i~l~ells~~ 141 (570)
+|||++.+ .+++||.+.+++.++...+
T Consensus 89 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 89 LVLDEDRF-GNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEEcCCc-CCeeEEEEEEEcccCCCCc
Confidence 99999998 8899999999999976443
No 107
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.93 E-value=1.7e-09 Score=97.42 Aligned_cols=100 Identities=14% Similarity=0.118 Sum_probs=77.9
Q ss_pred eeeEEEEEEEeeec------CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEec
Q 008313 52 FAGIALLTLISAEM------KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFET 118 (570)
Q Consensus 52 ~~g~l~v~v~~~~l------~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~ 118 (570)
-.+.|.|.|++|+. ....||||.+.+.. ..++|+++++++||+|||.+.|.+... ....+.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 34689999999983 34779999998743 367999999999999999655554332 246799999999
Q ss_pred ccCCcccccCCceeeeeeccccCCccccchhhccCCC
Q 008313 119 NRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 155 (570)
Q Consensus 119 D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~ 155 (570)
+.++++++||.+.+++.+ ..... ..|+++++..
T Consensus 92 ~~~~~~~~lG~~~i~l~~--~~~~~--~~W~~l~~~~ 124 (134)
T cd00276 92 DSVGRNEVIGQVVLGPDS--GGEEL--EHWNEMLASP 124 (134)
T ss_pred CCCCCCceeEEEEECCCC--CCcHH--HHHHHHHhCC
Confidence 999999999999999998 22211 6788888764
No 108
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.93 E-value=2.5e-09 Score=84.10 Aligned_cols=61 Identities=23% Similarity=0.490 Sum_probs=54.0
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchH----HHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA----NKKEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~----~ei~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
++++|+.+|.|++|+|+.+||..++..++...++ +.+..+|+.+|.|+||.|+++||..+|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6889999999999999999999999998865544 456666999999999999999999875
No 109
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.92 E-value=2.3e-09 Score=97.42 Aligned_cols=90 Identities=12% Similarity=0.194 Sum_probs=71.3
Q ss_pred ccccceeeEEEEEEEeeec------CCCCCeEEEEEeC--C----ceeeeecccCCCCCccCcceeeEEecC--CCceEE
Q 008313 47 LNEEDFAGIALLTLISAEM------KFKDKWLACVSLG--E----QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVAR 112 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g--~----~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~ 112 (570)
+.-....+.|.|+|+.|+. ++..||||.+.+. . ...||+++++++||+|||.|.|.+..+ ....|.
T Consensus 8 L~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~ 87 (138)
T cd08408 8 LEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLM 87 (138)
T ss_pred eEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEE
Confidence 4445556899999999983 4577999999873 1 246999999999999999666655432 445799
Q ss_pred EEEEecccCCcccccCCceeeeee
Q 008313 113 ISVFETNRLSKSNLEGYCEVDLLE 136 (570)
Q Consensus 113 ~~v~D~D~~~~~D~iG~~~i~l~e 136 (570)
|+|||.|+++++|+||++.+.+..
T Consensus 88 ~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 88 FSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred EEEEECCCCCCCcEEEEEEECCcC
Confidence 999999999999999988777664
No 110
>PTZ00183 centrin; Provisional
Probab=98.88 E-value=7.1e-09 Score=95.78 Aligned_cols=116 Identities=23% Similarity=0.349 Sum_probs=86.9
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh-CCcchHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEEL 220 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~-g~~~~~~ei~~~ 220 (570)
..+|..+|++++|.| +..++..++. .+.... +..+|+.+|.+++|.|+++||..++... ......++++.+
T Consensus 20 ~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 20 REAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEE---IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 678999999999988 4444554432 334444 8899999999999999999999887653 444567789999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhccccCc
Q 008313 221 FKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNT 269 (570)
Q Consensus 221 F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~d 269 (570)
|+.+|.+++|.|+.+||..++...+..... ..+..++...|.+++
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~----~~~~~~~~~~d~~~~ 140 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKELGETITD----EELQEMIDEADRNGD 140 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHhCCCCCH----HHHHHHHHHhCCCCC
Confidence 999999999999999999999877654433 345566655554433
No 111
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.87 E-value=6.2e-09 Score=86.79 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=62.2
Q ss_pred HHHHHHHhccccC-CCCCceeHHHHHHHHHH-hCCcchH-HHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 178 KSFARRILSIVDY-NQDGQLSFKEFSDLISA-FGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 178 ~~~l~~if~~~D~-d~dG~Is~~Ef~~~l~~-~g~~~~~-~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
...+..+|+.||. +++|+|+..||..+|.. +|..++. ++++++++.+|.|+||.|+|+||..++..+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4568999999999 99999999999999999 8887887 899999999999999999999999998765
No 112
>PLN03008 Phospholipase D delta
Probab=98.86 E-value=3.2e-09 Score=118.57 Aligned_cols=87 Identities=14% Similarity=0.253 Sum_probs=71.2
Q ss_pred CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCceeeeeeccccCCcc
Q 008313 66 KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDA 144 (570)
Q Consensus 66 ~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~ 144 (570)
..++||||+|.++++ +.||+|+++++||+|||.|.+.+.. ....+.|+|+|+|.++. |.||.+.+++.++...+..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge~v- 150 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGERI- 150 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCCce-
Confidence 458899999999875 6799999999999999966666554 34579999999999985 9999999999998764443
Q ss_pred ccchhhccCCCC
Q 008313 145 DSEVFDLLDPSS 156 (570)
Q Consensus 145 ~~~~F~l~D~~~ 156 (570)
..|+++++.++
T Consensus 151 -d~Wl~Ll~~~~ 161 (868)
T PLN03008 151 -SGWFPVLGASG 161 (868)
T ss_pred -EEEEEccccCC
Confidence 56788877653
No 113
>PTZ00183 centrin; Provisional
Probab=98.84 E-value=3.6e-09 Score=97.77 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=87.0
Q ss_pred Cceeeeeec---ccc----CCccc-cchhhccCCCCchhH-HHHHhhhcC---CCCChhhHHHHHHHHhccccCCCCCce
Q 008313 129 YCEVDLLEF---LTK----DSDAD-SEVFDLLDPSSSNKI-VGKISLSCS---VEDPIETEKSFARRILSIVDYNQDGQL 196 (570)
Q Consensus 129 ~~~i~l~el---ls~----~~~~~-~~~F~l~D~~~~GkI-l~e~l~~l~---~~~~t~~e~~~l~~if~~~D~d~dG~I 196 (570)
.+.++..++ +.. ..... ..+|..+|.+++|.| ..++...+. ...... ..++.+|+.+|.+++|.|
T Consensus 31 ~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~---~~l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 31 SGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR---EEILKAFRLFDDDKTGKI 107 (158)
T ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH---HHHHHHHHHhCCCCCCcC
Confidence 667777776 211 11112 678889999999988 444433221 112223 348999999999999999
Q ss_pred eHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 197 SFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 197 s~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
+.+||..++..++..++.+++..+|..+|.|++|.|+++||..++...
T Consensus 108 ~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 108 SLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998653
No 114
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.84 E-value=1.2e-08 Score=92.98 Aligned_cols=103 Identities=16% Similarity=0.253 Sum_probs=79.8
Q ss_pred eeeEEEEEEEeee-cCCCCCeEEEEEeCCce-eeeecccCCCCCccCcceeeEEecCC-CceEEEEEEeccc-C---Ccc
Q 008313 52 FAGIALLTLISAE-MKFKDKWLACVSLGEQT-CRTAISDNTDKPIWNSEKKLLLETNG-PHVARISVFETNR-L---SKS 124 (570)
Q Consensus 52 ~~g~l~v~v~~~~-l~~~~dp~~~v~~g~~~-~rT~vik~tLNP~Wne~~~~~~~~~~-~~~l~~~v~D~D~-~---~~~ 124 (570)
+..-|.|.|++|+ +..+++||+.|.+++.. .||.++.+++||.|+| .|.|.+.. ...+.|.+++.+. . .++
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E--~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~ 86 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGE--HFEFSNLPPVSVITVNLYRESDKKKKKDKS 86 (146)
T ss_pred EEEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCccee--eEEecCCCcccEEEEEEEEccCccccccCC
Confidence 3358999999999 46678999999998866 5999999999999999 55554432 2458899975543 2 267
Q ss_pred cccCCceeeeeeccccCCccccchhhccCCCCch
Q 008313 125 NLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSN 158 (570)
Q Consensus 125 D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~G 158 (570)
++||.+.|++.++...... ..||.+.+.+++.
T Consensus 87 ~~IG~V~Ip~~~l~~~~~v--e~Wfpl~~~~~~~ 118 (146)
T cd04013 87 QLIGTVNIPVTDVSSRQFV--EKWYPVSTPKGNG 118 (146)
T ss_pred cEEEEEEEEHHHhcCCCcc--cEEEEeecCCCCC
Confidence 8999999999998754333 6899999887664
No 115
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=4.5e-09 Score=94.31 Aligned_cols=94 Identities=18% Similarity=0.390 Sum_probs=78.8
Q ss_pred cchhhccCCCCchhH-HHHH----hhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI-VGKI----SLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 220 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~----l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~ 220 (570)
.++..-+|.++.|+| +.++ ...++. .-+.++ ++.+|+.+|.|++|.||+.+|+.+...+|+.+++++++++
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e-~dt~eE---i~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eM 147 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGE-RDTKEE---IKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEM 147 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhc-cCcHHH---HHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHH
Confidence 456777788888988 2222 333332 335555 8999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHh
Q 008313 221 FKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 221 F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
++.+|.|+||.|+-+||.++|+.
T Consensus 148 IeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 148 IEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999999865
No 116
>PTZ00184 calmodulin; Provisional
Probab=98.82 E-value=5.3e-09 Score=95.40 Aligned_cols=95 Identities=27% Similarity=0.496 Sum_probs=48.5
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh-CCcchHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEEL 220 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~-g~~~~~~ei~~~ 220 (570)
...|..+|.+++|.| +..++..++. .+.... ++.+|..+|.+++|.|+++||..++... ......+.+..+
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAE---LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCC-CCCHHH---HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 445555666666655 2222222221 222222 5555666666666666666666555432 222334455556
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 221 FKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 221 F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
|+.+|.+++|+|+.+||..++...
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHH
Confidence 666666666666666666555544
No 117
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.81 E-value=7.6e-09 Score=93.93 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred ccceeeEEEEEEEeeec-----CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEE
Q 008313 49 EEDFAGIALLTLISAEM-----KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (570)
Q Consensus 49 ~~~~~g~l~v~v~~~~l-----~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~ 116 (570)
-....+.|.|+|++|+. ....||||.+.+.. ...||+++++++||+|||.|.|.+... ....|.|+|+
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 34445789999999984 23579999998642 366999999999999999666655322 3357999999
Q ss_pred ecccCCcccccCCceeeeee
Q 008313 117 ETNRLSKSNLEGYCEVDLLE 136 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~e 136 (570)
|.+..+++++||++.+....
T Consensus 90 ~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 90 QSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred eCCCCCCcceEEEEEECCcc
Confidence 99999999999998887544
No 118
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.77 E-value=1e-08 Score=97.18 Aligned_cols=118 Identities=22% Similarity=0.332 Sum_probs=89.2
Q ss_pred CCceeeeeeccccCCccc----cchhhccCCCCchh-H-HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHH
Q 008313 128 GYCEVDLLEFLTKDSDAD----SEVFDLLDPSSSNK-I-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEF 201 (570)
Q Consensus 128 G~~~i~l~ells~~~~~~----~~~F~l~D~~~~Gk-I-l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef 201 (570)
+.+.++.++++....... .++++.++++++|. | +++++..+....+....+..++-+|+.||.+++|+|+.+|+
T Consensus 47 ~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 566777777643332222 67899999988877 7 77777666554555444456899999999999999999999
Q ss_pred HHHHHH-hCCcch--HH----HHHHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008313 202 SDLISA-FGNQVA--AN----KKEELFKAADKNGDGVVSVDELAALLALQQ 245 (570)
Q Consensus 202 ~~~l~~-~g~~~~--~~----ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~ 245 (570)
..++.. ++...+ ++ -++..|..+|.|+||+|+++||..++.+.+
T Consensus 127 ~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 127 KQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 999988 454444 33 356789999999999999999999997653
No 119
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.77 E-value=1.5e-08 Score=90.93 Aligned_cols=90 Identities=8% Similarity=0.092 Sum_probs=68.4
Q ss_pred ccccceeeEEEEEEEeeec------CCCCCeEEEEEeC---C--ceeeeecccCCC-CCccCcceeeEEecC-CCceEEE
Q 008313 47 LNEEDFAGIALLTLISAEM------KFKDKWLACVSLG---E--QTCRTAISDNTD-KPIWNSEKKLLLETN-GPHVARI 113 (570)
Q Consensus 47 ~~~~~~~g~l~v~v~~~~l------~~~~dp~~~v~~g---~--~~~rT~vik~tL-NP~Wne~~~~~~~~~-~~~~l~~ 113 (570)
++-....|.|.|.|++|+. +...||||.|.+- . ...||+++++|+ ||+|||.|.|.+... .+-.+.+
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 3444556789999999983 3344789999752 2 466899999996 599999665554332 3345889
Q ss_pred EEEecccCCcccccCCceeeeee
Q 008313 114 SVFETNRLSKSNLEGYCEVDLLE 136 (570)
Q Consensus 114 ~v~D~D~~~~~D~iG~~~i~l~e 136 (570)
+|||+|+.+++|+||.+.+...+
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCcc
Confidence 99999999999999999888876
No 120
>PTZ00184 calmodulin; Provisional
Probab=98.76 E-value=2.8e-08 Score=90.60 Aligned_cols=114 Identities=14% Similarity=0.305 Sum_probs=85.5
Q ss_pred Cceeeeeecc------ccCCc-cc-cchhhccCCCCchhH-HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHH
Q 008313 129 YCEVDLLEFL------TKDSD-AD-SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFK 199 (570)
Q Consensus 129 ~~~i~l~ell------s~~~~-~~-~~~F~l~D~~~~GkI-l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~ 199 (570)
.+.++..++. ..... .. ..+|..+|.+++|.| +.++...+............++.+|+.+|.|++|.|+.+
T Consensus 25 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~ 104 (149)
T PTZ00184 25 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAA 104 (149)
T ss_pred CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHH
Confidence 6677777762 11111 12 678999999999988 444443332111101112348899999999999999999
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008313 200 EFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (570)
Q Consensus 200 Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~ 242 (570)
||..++...+..++.+++..+|..+|.+++|.|+++||..++.
T Consensus 105 e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 105 ELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999999888888999999999999999999999999998874
No 121
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.73 E-value=3.2e-08 Score=86.78 Aligned_cols=115 Identities=25% Similarity=0.320 Sum_probs=95.5
Q ss_pred CCccc-cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCC--CCCceeHHHHHHHHHHhCC---
Q 008313 141 DSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYN--QDGQLSFKEFSDLISAFGN--- 210 (570)
Q Consensus 141 ~~~~~-~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d--~dG~Is~~Ef~~~l~~~g~--- 210 (570)
++..+ +++|.++|..++|+| .++.+++++ .+|++.+ +.+....++.+ +--.|+|++|+.++.++..
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~ae---V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAE---VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHH---HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 33444 889999999999998 788999996 5899888 88899988887 4468999999999988754
Q ss_pred cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhh
Q 008313 211 QVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEV 263 (570)
Q Consensus 211 ~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~ 263 (570)
+.+-++.-+-++.||++++|.|...||+++|..+|++..+ ..+.+.+..
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~e----eEVe~Llag 132 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTE----EEVEELLAG 132 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccH----HHHHHHHcc
Confidence 3456788888999999999999999999999999998776 345555543
No 122
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.73 E-value=4.4e-08 Score=87.41 Aligned_cols=97 Identities=16% Similarity=0.229 Sum_probs=74.1
Q ss_pred EEEEEEEeeec----C----CCCCeEEEEEe------CCceeeeecccCCC-CCccCcceeeEEecCCCceEEEEEEecc
Q 008313 55 IALLTLISAEM----K----FKDKWLACVSL------GEQTCRTAISDNTD-KPIWNSEKKLLLETNGPHVARISVFETN 119 (570)
Q Consensus 55 ~l~v~v~~~~l----~----~~~dp~~~v~~------g~~~~rT~vik~tL-NP~Wne~~~~~~~~~~~~~l~~~v~D~D 119 (570)
.|+|+|++|+. . ...|||+.+.+ ....+||++++++. ||+|||.+.|.+.......+.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 57899999982 2 36799999988 45678999988876 9999996665554433346999999999
Q ss_pred cCCcccccCCceeeeeeccccCCccccchhhccCCCCc
Q 008313 120 RLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~ 157 (570)
.. +++++|.+.+.+.++.. . ..++.+.++.+.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~-g----~~~~~l~~~~~~ 114 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQ-G----YRHVPLLDSKGE 114 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcC-c----eEEEEecCCCCC
Confidence 98 99999999999998632 1 346677766553
No 123
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.72 E-value=2.7e-08 Score=81.36 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=63.0
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCC---ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGE---QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~---~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~ 126 (570)
|.|+|.+|+. ..+.+||+.+.++. ..++|++++++.||.|++.+.+.+.......+.|+|||++..+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 6788999983 33778999999877 67999999999999999966666545455569999999999999999
Q ss_pred cCCce
Q 008313 127 EGYCE 131 (570)
Q Consensus 127 iG~~~ 131 (570)
||.+.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99763
No 124
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.71 E-value=5.3e-08 Score=81.19 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=61.0
Q ss_pred HHHHHHHhcccc-CCCCC-ceeHHHHHHHHHH-----hCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 178 KSFARRILSIVD-YNQDG-QLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 178 ~~~l~~if~~~D-~d~dG-~Is~~Ef~~~l~~-----~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
...++++|+.+| .|++| .|+.+||..+|.. +|...+++++.++++.+|.|++|.|+|+||..++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 455899999998 79999 6999999999999 8888889999999999999999999999999988653
No 125
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.70 E-value=3.7e-08 Score=86.51 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=65.8
Q ss_pred EEEEEEeeec---CCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEecccCCcccccCC
Q 008313 56 ALLTLISAEM---KFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGY 129 (570)
Q Consensus 56 l~v~v~~~~l---~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~D~~~~~D~iG~ 129 (570)
|.|+|++|+. ...+|||+.+.++. +++||+++++ +||+|||++.|.+... ....+.+.++|.+..++++.+|.
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~ 80 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGK 80 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEE
Confidence 5788888873 25789999999987 4689999999 9999999555544332 22457788888887666666665
Q ss_pred ceeeeeeccccCCccccchhhccCCCC
Q 008313 130 CEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 130 ~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
.. +.++...... ..||.+...+.
T Consensus 81 v~--l~~~~~~~~~--~~w~~L~~~~~ 103 (117)
T cd08383 81 VA--LSKLDLGQGK--DEWFPLTPVDP 103 (117)
T ss_pred EE--ecCcCCCCcc--eeEEECccCCC
Confidence 44 4443221111 57888876554
No 126
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.65 E-value=4.2e-08 Score=93.03 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=46.1
Q ss_pred cchhhccCCCCchhH-HHHHhhhcCCC-CChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh----CC-------cc
Q 008313 146 SEVFDLLDPSSSNKI-VGKISLSCSVE-DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF----GN-------QV 212 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~l~~l~~~-~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~----g~-------~~ 212 (570)
..+|..+|.+++|.| +.+++.++... .-+.+ +.++-+|+.+|.|+||+|+.+|+..++.++ +. ..
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~e--ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLE--EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHH--HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 345555666666655 33433332211 11111 123444666666666666666665555442 11 11
Q ss_pred hHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 213 AANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 213 ~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
+++-+..+|+.+|.|+||.||++||...+..
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 2334555566666666666666666555544
No 127
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.64 E-value=1.2e-07 Score=79.93 Aligned_cols=67 Identities=22% Similarity=0.270 Sum_probs=57.8
Q ss_pred HHHHHHHhcccc-CCCCC-ceeHHHHHHHHHH-h----CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 178 KSFARRILSIVD-YNQDG-QLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 178 ~~~l~~if~~~D-~d~dG-~Is~~Ef~~~l~~-~----g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
...+.++|+.|| .|++| +|+.+||..++.. + ....++.++.++++.+|.|+||.|+++||..++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 455788899999 78998 5999999999976 3 334477899999999999999999999999999775
No 128
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.64 E-value=8e-08 Score=85.74 Aligned_cols=106 Identities=18% Similarity=0.275 Sum_probs=87.1
Q ss_pred ccccCCccc-cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH-hCC
Q 008313 137 FLTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGN 210 (570)
Q Consensus 137 lls~~~~~~-~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~ 210 (570)
.+.+.++.+ ++.|.++|.|++|.| +...+.+++. .+++++ +..+++. ..|.|+|.-|+.++.. +..
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~e---lDaM~~E----a~gPINft~FLTmfGekL~g 96 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEE---LDAMMKE----APGPINFTVFLTMFGEKLNG 96 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHh----CCCCeeHHHHHHHHHHHhcC
Confidence 356666767 899999999999988 8888888864 566666 7777764 4788999999998865 666
Q ss_pred cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcc
Q 008313 211 QVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPL 250 (570)
Q Consensus 211 ~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~ 250 (570)
..+++.+..+|+.||.+++|.|..+.|+++|...+++..+
T Consensus 97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~ 136 (171)
T KOG0031|consen 97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTD 136 (171)
T ss_pred CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCH
Confidence 6778889999999999999999999999999988887665
No 129
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.59 E-value=1.5e-07 Score=89.32 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=88.7
Q ss_pred cchhhccCCCC-chhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHH
Q 008313 146 SEVFDLLDPSS-SNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEEL 220 (570)
Q Consensus 146 ~~~F~l~D~~~-~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~ 220 (570)
.+|+.-+-.+. .|.+ +..++.++. |......+.+.+|+.+|.|+||.|++.||..++........++.++.+
T Consensus 29 ~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~f---p~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~ 105 (193)
T KOG0044|consen 29 QQWYRGFKNECPSGRLTLEEFREIYASFF---PDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWA 105 (193)
T ss_pred HHHHHHhcccCCCCccCHHHHHHHHHHHC---CCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhh
Confidence 45555543332 4444 556666653 223333568999999999999999999999999887777888899999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhhhccC-----c--ccCCchhHHHHhhhccccCchh
Q 008313 221 FKAADKNGDGVVSVDELAALLALQQEKE-----P--LMNCCPVCGETLEVADMVNTMI 271 (570)
Q Consensus 221 F~~~D~d~dG~Is~dEf~~~l~~l~e~~-----~--~~~~~~~~~~~l~~~d~~~dl~ 271 (570)
|+.||.|+||+|+.+|+..+++..-... + +...+..+.+++++.|.++|..
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~ 163 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGK 163 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999987753221 1 2222234666788888766643
No 130
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.58 E-value=2.2e-07 Score=77.49 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=60.9
Q ss_pred hHHHHHHHHhccccC-CC-CCceeHHHHHHHHHH---hCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 176 TEKSFARRILSIVDY-NQ-DGQLSFKEFSDLISA---FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 176 ~e~~~l~~if~~~D~-d~-dG~Is~~Ef~~~l~~---~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
.....+-++|..||. |+ +|+|+.+||..++.. +|.+.+++++.++|+.+|.|++|.|+++||..++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 334557789999998 77 899999999999963 6888999999999999999999999999999998764
No 131
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.56 E-value=2.1e-07 Score=78.69 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=58.7
Q ss_pred HHHHHHhccccC-CC-CCceeHHHHHHHHHH-----hCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 179 SFARRILSIVDY-NQ-DGQLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 179 ~~l~~if~~~D~-d~-dG~Is~~Ef~~~l~~-----~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..+.++|+.+|. |+ +|.|+.+||..+|.. ++...+++++..+|+.+|.|++|.|+++||..++...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 448899999997 97 699999999999986 4556788999999999999999999999999998664
No 132
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.55 E-value=3.1e-07 Score=77.96 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 174 IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 174 t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
+.++...++++|+.+|.|++|.|+.+|+..++...+ .+.++++.+|..+|.+++|.|+++||..++...
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 344556799999999999999999999999998865 678899999999999999999999999988664
No 133
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.3e-07 Score=101.22 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=71.1
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeC---CceeeeecccCCCCCccCcceeeEE--ecCCCceEEEEEEecccCC
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLG---EQTCRTAISDNTDKPIWNSEKKLLL--ETNGPHVARISVFETNRLS 122 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g---~~~~rT~vik~tLNP~Wne~~~~~~--~~~~~~~l~~~v~D~D~~~ 122 (570)
..|.|+|+.|+. ++.+||||.+.+- ...++|++.++||||+|||+|.|.+ +......|.+.|||.|+|+
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfs 246 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFS 246 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcc
Confidence 588999999983 4468999999864 3678999999999999999766653 2335678999999999999
Q ss_pred cccccCCceeeeeecc
Q 008313 123 KSNLEGYCEVDLLEFL 138 (570)
Q Consensus 123 ~~D~iG~~~i~l~ell 138 (570)
+||+||++.+++..+-
T Consensus 247 r~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 247 RHDFIGEVILPLGEVD 262 (421)
T ss_pred cccEEEEEEecCcccc
Confidence 9999999999988753
No 134
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.54 E-value=2.3e-07 Score=69.75 Aligned_cols=52 Identities=29% Similarity=0.630 Sum_probs=48.7
Q ss_pred CCCceeHHHHHHHHHHhCCc-chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 192 QDGQLSFKEFSDLISAFGNQ-VAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 192 ~dG~Is~~Ef~~~l~~~g~~-~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
.+|.|+.+||..+|..+|.. ++++++..+|..+|.|++|+|+++||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999778988 99999999999999999999999999999864
No 135
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.52 E-value=3.3e-07 Score=77.14 Aligned_cols=66 Identities=29% Similarity=0.426 Sum_probs=58.2
Q ss_pred HHHHHHhcccc-CCCCC-ceeHHHHHHHHHH-hCC----cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 179 SFARRILSIVD-YNQDG-QLSFKEFSDLISA-FGN----QVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 179 ~~l~~if~~~D-~d~dG-~Is~~Ef~~~l~~-~g~----~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..++++|+.+| .|++| .|+..||..+|.. +|. ..++++++++|+.+|.|++|.|+++||..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 45899999997 99999 5999999999975 543 3578899999999999999999999999998764
No 136
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.50 E-value=1.9e-07 Score=106.26 Aligned_cols=88 Identities=24% Similarity=0.274 Sum_probs=73.2
Q ss_pred eeEEEEEEEeeec------CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccc
Q 008313 53 AGIALLTLISAEM------KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSN 125 (570)
Q Consensus 53 ~g~l~v~v~~~~l------~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D 125 (570)
+|.+.|.++.+.. ...+||||.+.+.++ +|+|.++|+||||+|||.+...+.....-.+.+.|+|||.-.++|
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd 1118 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKND 1118 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCcc
Confidence 3788888888873 445789999988765 999999999999999996666665444556999999999999999
Q ss_pred ccCCceeeeeecccc
Q 008313 126 LEGYCEVDLLEFLTK 140 (570)
Q Consensus 126 ~iG~~~i~l~ells~ 140 (570)
.+|.+++++..+...
T Consensus 1119 ~lg~~~idL~~l~~~ 1133 (1227)
T COG5038 1119 LLGTAEIDLSKLEPG 1133 (1227)
T ss_pred ccccccccHhhcCcC
Confidence 999999999986543
No 137
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.49 E-value=3.6e-07 Score=71.63 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=55.3
Q ss_pred HHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 182 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 182 ~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
+++|+.+|.|++|.|+.+|+..++...| .+.++++.+|+.+|.+++|.|+++||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5689999999999999999999998876 478889999999999999999999999988653
No 138
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.46 E-value=5.3e-07 Score=75.20 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=59.3
Q ss_pred HHHHHHHHhccccC--CCCCceeHHHHHHHHHH-hCCcc----hHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 177 EKSFARRILSIVDY--NQDGQLSFKEFSDLISA-FGNQV----AANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 177 e~~~l~~if~~~D~--d~dG~Is~~Ef~~~l~~-~g~~~----~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
+...++.+|..+|. |++|.|+.+||..++.. +|... +.++++.++..+|.+++|.|+++||..++..+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34568899999999 89999999999999976 55433 48899999999999999999999999998764
No 139
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.44 E-value=6.7e-07 Score=84.79 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=35.4
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
|+.+|+.+|.|++|.|+..||.++|..+|..++++-...+++.||..++|.|.+++|++++..
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555543
No 140
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.44 E-value=8.4e-07 Score=74.29 Aligned_cols=84 Identities=24% Similarity=0.346 Sum_probs=67.0
Q ss_pred EEEEEEeeec------CCCCCeEEEEEeCCc---eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccc
Q 008313 56 ALLTLISAEM------KFKDKWLACVSLGEQ---TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNL 126 (570)
Q Consensus 56 l~v~v~~~~l------~~~~dp~~~v~~g~~---~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~ 126 (570)
+.+.|.+++. ....+||+.+..... .++|+++.++.||.||+.+.+.+.......+.++|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 5677777762 236789999998764 8999999999999999955444433225779999999999888899
Q ss_pred cCCceeeeeeccc
Q 008313 127 EGYCEVDLLEFLT 139 (570)
Q Consensus 127 iG~~~i~l~ells 139 (570)
+|.+.+++.++..
T Consensus 82 ~G~~~~~l~~~~~ 94 (101)
T smart00239 82 IGQVTIPLSDLLL 94 (101)
T ss_pred eEEEEEEHHHccc
Confidence 9999999888653
No 141
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.43 E-value=6.5e-07 Score=67.94 Aligned_cols=61 Identities=25% Similarity=0.561 Sum_probs=57.3
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
++.+|..+|.+++|.|+++||..++..++...+.+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999988999999999999999999999999998865
No 142
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.42 E-value=1e-06 Score=73.64 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=58.3
Q ss_pred HHHHHHHHhcc-ccCCCCC-ceeHHHHHHHHHHh-----CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 177 EKSFARRILSI-VDYNQDG-QLSFKEFSDLISAF-----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 177 e~~~l~~if~~-~D~d~dG-~Is~~Ef~~~l~~~-----g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
....+..+|+. +|.|++| .|+.+||..++... +....+.++.++++.+|.|+||.|+++||..++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34568889999 7788986 99999999999874 335567899999999999999999999999998764
No 143
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.37 E-value=8.9e-07 Score=83.94 Aligned_cols=110 Identities=19% Similarity=0.259 Sum_probs=87.2
Q ss_pred cchhhccCCCCchhH-HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHh
Q 008313 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 224 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~ 224 (570)
..+|...|.+..|.| -.++...+.......-..+.++.++.+||.|.+|.|.++||..+...+. +.+++|+.+
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~vF~~~ 133 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNVFRTY 133 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHHHHhc
Confidence 578999999999998 5555555442222222234499999999999999999999999997765 799999999
Q ss_pred cCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhcc
Q 008313 225 DKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVAD 265 (570)
Q Consensus 225 D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d 265 (570)
|+|+.|.|+..||.+.|..++-..+. .....++++-|
T Consensus 134 D~D~SG~I~~sEL~~Al~~~Gy~Lsp----q~~~~lv~kyd 170 (221)
T KOG0037|consen 134 DRDRSGTIDSSELRQALTQLGYRLSP----QFYNLLVRKYD 170 (221)
T ss_pred ccCCCCcccHHHHHHHHHHcCcCCCH----HHHHHHHHHhc
Confidence 99999999999999999999877665 35555555555
No 144
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.35 E-value=1.7e-06 Score=72.05 Aligned_cols=82 Identities=29% Similarity=0.418 Sum_probs=66.4
Q ss_pred EEEEEeeec------CCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCC
Q 008313 57 LLTLISAEM------KFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGY 129 (570)
Q Consensus 57 ~v~v~~~~l------~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~ 129 (570)
.|.+.+++. ....+||+.+.+.. ..++|+++.+++||.||+.+.+.+.......+.++|||.+..+.++++|.
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~ 81 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGE 81 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEE
Confidence 466777763 33678999999987 99999999999999999944444433225679999999999988999999
Q ss_pred ceeeeeecc
Q 008313 130 CEVDLLEFL 138 (570)
Q Consensus 130 ~~i~l~ell 138 (570)
+.+++.++.
T Consensus 82 ~~~~l~~l~ 90 (102)
T cd00030 82 VEIPLSELL 90 (102)
T ss_pred EEEeHHHhh
Confidence 999999865
No 145
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.31 E-value=5.1e-07 Score=95.25 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=81.9
Q ss_pred eEEEEEEEeee----cCCC---CCeEEEEEeCCceeeeecccCCCCCccCc-ceeeEEecC--CCceEEEEEEecccCCc
Q 008313 54 GIALLTLISAE----MKFK---DKWLACVSLGEQTCRTAISDNTDKPIWNS-EKKLLLETN--GPHVARISVFETNRLSK 123 (570)
Q Consensus 54 g~l~v~v~~~~----l~~~---~dp~~~v~~g~~~~rT~vik~tLNP~Wne-~~~~~~~~~--~~~~l~~~v~D~D~~~~ 123 (570)
|-+.|++.++| |.+. -|-||.++++..+|||.|..++|||.||. +|+|.++.. .+.++.+.++|+|.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 56788899998 2332 37899999999999999999999999997 788887543 67789999999999999
Q ss_pred ccccCCceeeeeeccccCCc-------cc-cchhhccCCC
Q 008313 124 SNLEGYCEVDLLEFLTKDSD-------AD-SEVFDLLDPS 155 (570)
Q Consensus 124 ~D~iG~~~i~l~ells~~~~-------~~-~~~F~l~D~~ 155 (570)
+|.||.+.|++..+.-.+.. .. .-||..+|.-
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti 122 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI 122 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec
Confidence 99999999999987432211 11 4578877764
No 146
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.29 E-value=1.2e-06 Score=99.86 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=73.2
Q ss_pred eEEEEEEEeeec--------CCCCCeEEEEEeCCcee-eeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcc
Q 008313 54 GIALLTLISAEM--------KFKDKWLACVSLGEQTC-RTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKS 124 (570)
Q Consensus 54 g~l~v~v~~~~l--------~~~~dp~~~v~~g~~~~-rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~ 124 (570)
|||.|+|..|+- ....|||+.+.+.+... ||+++++++||+|||++-+.++. ....|.++|||.+.+.++
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd 514 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSD 514 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecc-cCCceeEEEEeccccCCc
Confidence 899999999982 56779999999765443 99999999999999965555553 667899999999999999
Q ss_pred cccCCceeeeeeccccC
Q 008313 125 NLEGYCEVDLLEFLTKD 141 (570)
Q Consensus 125 D~iG~~~i~l~ells~~ 141 (570)
+.+|...++|..+....
T Consensus 515 ~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 515 KVVGSTQLDLALLHQNP 531 (1227)
T ss_pred ceeeeEEechHHhhhcc
Confidence 99999999999875433
No 147
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.28 E-value=3.6e-06 Score=75.32 Aligned_cols=67 Identities=12% Similarity=0.317 Sum_probs=59.3
Q ss_pred ChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 173 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 173 ~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
.++.+.+.++++|..+|.|+||.|+.+++.+++.++|...+++++..|++. ..|-|+|--|..++-+
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGE 92 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHH
Confidence 345566779999999999999999999999999999999999999999987 4678999999887754
No 148
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.28 E-value=2e-06 Score=75.30 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=53.1
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
...+..+|..+|.|+||.|+.+|+..+. + ...+..+..+|+.+|.|+||.||++||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4558899999999999999999999876 2 2346678999999999999999999999998
No 149
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.27 E-value=2.6e-06 Score=76.46 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=65.1
Q ss_pred EEEEEEeeec--------CC--CCCeEEEEEeC---CceeeeecccCCCC--CccCcceeeEEec---------------
Q 008313 56 ALLTLISAEM--------KF--KDKWLACVSLG---EQTCRTAISDNTDK--PIWNSEKKLLLET--------------- 105 (570)
Q Consensus 56 l~v~v~~~~l--------~~--~~dp~~~v~~g---~~~~rT~vik~tLN--P~Wne~~~~~~~~--------------- 105 (570)
|+|.|-.++. .+ .+||||.+.+- ....+|.|..++|| |.||+.+.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 5677777762 22 48999998863 46789999999999 9999954433322
Q ss_pred --------CCCceEEEEEEecccCCcccccCCceeeeeeccc
Q 008313 106 --------NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 139 (570)
Q Consensus 106 --------~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells 139 (570)
-.+..+.+.|||.|.++.+|++|+.++++..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 1245699999999999999999999999998654
No 150
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.26 E-value=1.2e-06 Score=83.07 Aligned_cols=122 Identities=26% Similarity=0.355 Sum_probs=88.6
Q ss_pred cchhhccCCC-CchhHHHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCc-eeHHHHHHHHHHhCCcchHH-HHHHHHH
Q 008313 146 SEVFDLLDPS-SSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQ-LSFKEFSDLISAFGNQVAAN-KKEELFK 222 (570)
Q Consensus 146 ~~~F~l~D~~-~~GkIl~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~-Is~~Ef~~~l~~~g~~~~~~-ei~~~F~ 222 (570)
...|..++.. ++|.+..+-+..+ +....+.+..+++..+|.+++|. |++++|...+.......+.. +++-+|+
T Consensus 36 ~~rF~kl~~~~~~g~lt~eef~~i----~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~ 111 (187)
T KOG0034|consen 36 YERFKKLDRNNGDGYLTKEEFLSI----PELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFR 111 (187)
T ss_pred HHHHHHhccccccCccCHHHHHHH----HHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHH
Confidence 5678888888 7887733322222 12223345788999999999998 99999999999876665554 9999999
Q ss_pred HhcCCCCCCcCHHHHHHHHHhhhcc-Cc--ccCCchhHHHHhhhccccCchh
Q 008313 223 AADKNGDGVVSVDELAALLALQQEK-EP--LMNCCPVCGETLEVADMVNTMI 271 (570)
Q Consensus 223 ~~D~d~dG~Is~dEf~~~l~~l~e~-~~--~~~~~~~~~~~l~~~d~~~dl~ 271 (570)
.||.+++|+|+.+|+.+++...-.. .. +...-..+.+.+.+.|.++|..
T Consensus 112 vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 112 VYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred HhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999886442 22 1111134666777888777653
No 151
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-06 Score=93.29 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=89.6
Q ss_pred cccccCCCCCCCCCCccccccccccee---eEEEEEEEeeec-----CCCCCeEEEEE-e-C----CceeeeecccCCCC
Q 008313 27 ERRRSRGNGSNSGSHHHNRVLNEEDFA---GIALLTLISAEM-----KFKDKWLACVS-L-G----EQTCRTAISDNTDK 92 (570)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~l~v~v~~~~l-----~~~~dp~~~v~-~-g----~~~~rT~vik~tLN 92 (570)
++..+.++++++++ +++.|++.. .++.+.+.+.++ ..++|||..+. . + ..++||+++++|||
T Consensus 111 ~l~~~~~~~~~~g~----iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~ 186 (529)
T KOG1327|consen 111 PLLLKPGKNAGSGT----ITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN 186 (529)
T ss_pred hhhcccCccCCccc----EEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence 34455567788877 888888866 577777776664 44667776554 3 2 27889999999999
Q ss_pred CccCcce---eeEEecCCCceEEEEEEecccCCcccccCCceeeeeeccccCCccccchhhccCCCC
Q 008313 93 PIWNSEK---KLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 93 P~Wne~~---~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
|.|.++. .-+|..+.+.++.+.|||+|..++||+||.+..++.++.. ... ...+.++.+++
T Consensus 187 p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~-~~~--~~~~~~~~~~~ 250 (529)
T KOG1327|consen 187 PQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE-PGS--PNQIMLINPKK 250 (529)
T ss_pred CcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc-cCC--cccccccChhh
Confidence 9999954 3356666778899999999999999999999999998643 111 34455555543
No 152
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.23 E-value=3.7e-06 Score=86.39 Aligned_cols=94 Identities=20% Similarity=0.358 Sum_probs=74.5
Q ss_pred cchhhccCCCCchhH-HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHh
Q 008313 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 224 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~ 224 (570)
+.+|..+|.+.+|.+ +.++...+. ..+ ..+.++|+.+|.++||.|+.+|+...+..+|.+++++++..+|+..
T Consensus 54 ~~l~~~~d~~~dg~vDy~eF~~Y~~---~~E---~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~ 127 (463)
T KOG0036|consen 54 KMLFSAMDANRDGRVDYSEFKRYLD---NKE---LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHM 127 (463)
T ss_pred HHHHHhcccCcCCcccHHHHHHHHH---HhH---HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHh
Confidence 667888888888887 555554442 122 3377888889999999999999999888888888888888899999
Q ss_pred cCCCCCCcCHHHHHHHHHhhh
Q 008313 225 DKNGDGVVSVDELAALLALQQ 245 (570)
Q Consensus 225 D~d~dG~Is~dEf~~~l~~l~ 245 (570)
|+++++.|+++|+.+.+.-.+
T Consensus 128 d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 128 DKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred ccCCCeeeccHHHHhhhhcCC
Confidence 999999999999888875544
No 153
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.23 E-value=2e-06 Score=88.25 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=89.0
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F 221 (570)
+.+|+.+|.+++|.+ +...+.++...++... ..+.+|+..|.|.||.++++||...+.. .+.++.++|
T Consensus 17 ~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~---~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F 88 (463)
T KOG0036|consen 17 RCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYE---AAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIF 88 (463)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchH---HHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHH
Confidence 779999999999988 3334456544323333 3788999999999999999999999853 556889999
Q ss_pred HHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhccccCch
Q 008313 222 KAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 270 (570)
Q Consensus 222 ~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~dl 270 (570)
+..|.+.||.|..+|+.+.|.+++.+..+ ....++++..|.++..
T Consensus 89 ~~iD~~hdG~i~~~Ei~~~l~~~gi~l~d----e~~~k~~e~~d~~g~~ 133 (463)
T KOG0036|consen 89 QSIDLEHDGKIDPNEIWRYLKDLGIQLSD----EKAAKFFEHMDKDGKA 133 (463)
T ss_pred hhhccccCCccCHHHHHHHHHHhCCccCH----HHHHHHHHHhccCCCe
Confidence 99999999999999999999999887665 3445566666655544
No 154
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.23 E-value=5.6e-06 Score=87.16 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCc---chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccC
Q 008313 172 DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQ---VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKE 248 (570)
Q Consensus 172 ~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~---~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~ 248 (570)
..+.++...+++.|..+| |++|+|+..|+..++...+.. ...++++++....+.|.+|.|++|||..++..+..+.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 456677778999999999 999999999999999886543 3578899999999999999999999999886654432
Q ss_pred cccCCchhHHHHhhhccccCchhhhccccCcCCcceeeccCCcChhhhHHHHHHHhccc-cccccccccCCCCCc
Q 008313 249 PLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSEW-GHFSSYDVGLNSGSR 322 (570)
Q Consensus 249 ~~~~~~~~~~~~l~~~d~~~dl~~~a~c~~~~~~~~~~~~g~~~~~~a~~~w~~k~l~~-~~~~~y~~~~~~~~~ 322 (570)
.. + +. ........+...+++++.|++ ..+++.||.+|+|+.|+. .-.+.+ ++.+.-+.
T Consensus 91 ~~--------k-~~--~g~~~~~~~~~~sst~~~Hti----~eeEk~~fv~hIN~~L~~Dpdl~~~-lPinp~t~ 149 (627)
T KOG0046|consen 91 IA--------K-IG--EGIKAASGTLKGSSTGTQHTI----NEEEKRAFVNHINSYLEGDPDLKHL-LPINPNTN 149 (627)
T ss_pred hh--------h-hc--CCcccccceeecccccceeee----cHHHHHHHHHHHHHHhcCCcchhhc-CCCCCchH
Confidence 11 1 11 222333466777889999999 999999999999999974 444444 56654443
No 155
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=3.1e-06 Score=90.52 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=67.1
Q ss_pred eEEEEEEEeee-c-----CCCCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecC-CCceEEEEEEecccC-----
Q 008313 54 GIALLTLISAE-M-----KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETN-GPHVARISVFETNRL----- 121 (570)
Q Consensus 54 g~l~v~v~~~~-l-----~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~-~~~~l~~~v~D~D~~----- 121 (570)
.-+.++|.+|. + .+++||||....|....||++|..+|||+||| +|-+++. ....+++.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~e--kfhfechnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNE--KFHFECHNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhh--heeeeecCCCceeEEEEecCcccHHHHH
Confidence 36777887776 2 66899999999999999999999999999999 6655553 445699999999842
Q ss_pred ------CcccccCCceeeeeec
Q 008313 122 ------SKSNLEGYCEVDLLEF 137 (570)
Q Consensus 122 ------~~~D~iG~~~i~l~el 137 (570)
..+|++|..-|.+..+
T Consensus 373 rqkl~resddflgqtvievrtl 394 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTL 394 (1283)
T ss_pred HHHhhhcccccccceeEEEEec
Confidence 4689999988888875
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=98.09 E-value=8e-06 Score=88.31 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=73.2
Q ss_pred eEEEEEEEeee-c--C--------CCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEe
Q 008313 54 GIALLTLISAE-M--K--------FKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFE 117 (570)
Q Consensus 54 g~l~v~v~~~~-l--~--------~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D 117 (570)
..|.|+|+.+. + . -..||||.|...+ ...+|.|..|++||+|||++.|.+....-..++|.|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 57899999986 2 1 1347999998643 45688888999999999966665544333459999999
Q ss_pred cccCCcccccCCceeeeeeccccCCccccchhhccCCCC
Q 008313 118 TNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 118 ~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
.|..+++|++|+..+++..+.. + .+...++|.++
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~-G----yR~VpL~~~~g 522 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIE-G----IRAVPLYDERG 522 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcC-C----ceeEeccCCCc
Confidence 9999999999999999998532 1 23556666544
No 157
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.08 E-value=3.3e-06 Score=54.85 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 216 KKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 216 ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
|++++|+.+|+|+||+|+++||..+|++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3455666666666666666666665543
No 158
>PLN02952 phosphoinositide phospholipase C
Probab=98.07 E-value=1e-05 Score=89.30 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=73.0
Q ss_pred eEEEEEEEeee---cCC--------C-CCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEE
Q 008313 54 GIALLTLISAE---MKF--------K-DKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVF 116 (570)
Q Consensus 54 g~l~v~v~~~~---l~~--------~-~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~ 116 (570)
..|.|+|+.+. +.+ + .||||.|..- ....||+++.+|+||+||+++.|.+....-..++|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 57899999985 111 1 2789988753 25669999999999999996655444432345899999
Q ss_pred ecccCCcccccCCceeeeeeccccCCccccchhhccCCCC
Q 008313 117 ETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
|+|..+.+|++|...+++..+.. + .+++.++|.++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~-G----yR~VpL~~~~G 584 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRP-G----IRSVPLHDKKG 584 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcC-C----ceeEeCcCCCC
Confidence 99999999999999999998642 1 24667776554
No 159
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.03 E-value=1.5e-05 Score=66.57 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=56.6
Q ss_pred HHHHHHhccccCC--CCCceeHHHHHHHHH-HhCCcch----HHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 179 SFARRILSIVDYN--QDGQLSFKEFSDLIS-AFGNQVA----ANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 179 ~~l~~if~~~D~d--~dG~Is~~Ef~~~l~-~~g~~~~----~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..+-.+|+.++.. ++|.|+.+||..+|. .++..++ ++++..+|+.+|.|++|.|+++||..++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4467889999865 479999999999997 4666565 8999999999999999999999999998764
No 160
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=2.8e-06 Score=85.00 Aligned_cols=125 Identities=21% Similarity=0.296 Sum_probs=78.8
Q ss_pred EEecccCCcccccCCceeeeeec---cccCCccc------cchhhccCCCCchhH-HHHHhhhcCCC---CChhh-HHHH
Q 008313 115 VFETNRLSKSNLEGYCEVDLLEF---LTKDSDAD------SEVFDLLDPSSSNKI-VGKISLSCSVE---DPIET-EKSF 180 (570)
Q Consensus 115 v~D~D~~~~~D~iG~~~i~l~el---ls~~~~~~------~~~F~l~D~~~~GkI-l~e~l~~l~~~---~~t~~-e~~~ 180 (570)
.+|..+|..-|..|.+.+++.++ +-++.... .+...-+|+|++|+| +.+++..+-.. ...++ ....
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~E 242 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTE 242 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccccc
Confidence 35666777777778888888876 22332222 234555788888887 44433332110 11111 1122
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 239 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~ 239 (570)
-.+.+...|+|+||+++-+|++..+.--+....+.+++.++-..|.|+||++|++|+..
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 34666777888888888888887775545556677788888888888888888888754
No 161
>PF14658 EF-hand_9: EF-hand domain
Probab=98.01 E-value=2e-05 Score=61.16 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=56.6
Q ss_pred HHhccccCCCCCceeHHHHHHHHHHhCC-cchHHHHHHHHHHhcCCCC-CCcCHHHHHHHHHhh
Q 008313 183 RILSIVDYNQDGQLSFKEFSDLISAFGN-QVAANKKEELFKAADKNGD-GVVSVDELAALLALQ 244 (570)
Q Consensus 183 ~if~~~D~d~dG~Is~~Ef~~~l~~~g~-~~~~~ei~~~F~~~D~d~d-G~Is~dEf~~~l~~l 244 (570)
.+|+.+|.++.|.|...++..+|.+.+. ..++.++..+.+.+|.++. |.|+++.|..+|+++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3689999999999999999999999887 7788899999999999987 999999999999763
No 162
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.97 E-value=6.3e-06 Score=72.90 Aligned_cols=100 Identities=27% Similarity=0.374 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchH-HHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc-cCc
Q 008313 172 DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQQE-KEP 249 (570)
Q Consensus 172 ~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~-~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e-~~~ 249 (570)
.|...++.+-+++.+.|..||+|.+++++|.+++..+.+..+. -++.-+|+.+|-|+|+.|..+++...++.+.. ...
T Consensus 64 MPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 64 MPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred ChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 3555556777888899999999999999999999887765443 46777899999999999999999999988742 222
Q ss_pred ccCCchhHHHHhhhccccCchh
Q 008313 250 LMNCCPVCGETLEVADMVNTMI 271 (570)
Q Consensus 250 ~~~~~~~~~~~l~~~d~~~dl~ 271 (570)
+++.-.+|.++++++|.++|..
T Consensus 144 ~eEv~~i~ekvieEAD~DgDgk 165 (189)
T KOG0038|consen 144 DEEVELICEKVIEEADLDGDGK 165 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCCCc
Confidence 2222257999999999888764
No 163
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=1.6e-05 Score=85.28 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=66.0
Q ss_pred cceeeEEEEEEEeeec------CCCCCeEEEEEe--CC---ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEE
Q 008313 50 EDFAGIALLTLISAEM------KFKDKWLACVSL--GE---QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (570)
Q Consensus 50 ~~~~g~l~v~v~~~~l------~~~~dp~~~v~~--g~---~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~ 116 (570)
-.-.|.|.|.|++|+. +.-+||||.+.+ ++ ...||.+.++++||+|||.+.|.+..+ .+-.+.++||
T Consensus 294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 3345899999999983 556789998875 22 556899999999999999665544322 2335999999
Q ss_pred ecccCCcccccCCceeeee
Q 008313 117 ETNRLSKSNLEGYCEVDLL 135 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~ 135 (570)
|+|.++.+++||.+.+-..
T Consensus 374 d~d~~~~~~~iG~~~lG~~ 392 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCILGSD 392 (421)
T ss_pred EcccccccceeeEEEecCC
Confidence 9999999999996655544
No 164
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.95 E-value=1.7e-05 Score=70.21 Aligned_cols=113 Identities=13% Similarity=0.275 Sum_probs=79.5
Q ss_pred ceeeeeeccccCCccc----cchhhccCCCCchhH-HHHHh---hhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHH
Q 008313 130 CEVDLLEFLTKDSDAD----SEVFDLLDPSSSNKI-VGKIS---LSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEF 201 (570)
Q Consensus 130 ~~i~l~ells~~~~~~----~~~F~l~D~~~~GkI-l~e~l---~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef 201 (570)
..++.+.+....+..+ +++...+..++.|.+ +.+++ .-+....|.+.. +.-+|+.+|-|+|++|.-.++
T Consensus 54 v~vp~e~i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK---~~YAFkIYDfd~D~~i~~~DL 130 (189)
T KOG0038|consen 54 VKVPFELIEKMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLK---AKYAFKIYDFDGDEFIGHDDL 130 (189)
T ss_pred eeecHHHHhhChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhh---hhheeEEeecCCCCcccHHHH
Confidence 3455554433333332 567788888898877 33322 222222344444 788999999999999999999
Q ss_pred HHHHHHhC-CcchHHHH----HHHHHHhcCCCCCCcCHHHHHHHHHhhh
Q 008313 202 SDLISAFG-NQVAANKK----EELFKAADKNGDGVVSVDELAALLALQQ 245 (570)
Q Consensus 202 ~~~l~~~g-~~~~~~ei----~~~F~~~D~d~dG~Is~dEf~~~l~~l~ 245 (570)
...+.++. ..++++++ +.+++.+|.||||+|++.||..++.+.+
T Consensus 131 ~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 131 EKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 99998864 34666665 5667889999999999999999886643
No 165
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=1.1e-05 Score=80.76 Aligned_cols=119 Identities=26% Similarity=0.346 Sum_probs=87.6
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh--------CCcch
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF--------GNQVA 213 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~--------g~~~~ 213 (570)
..++..+|.+++|.| +..++.... ...... ...+-+..+|.|.||.|+++|+...+... .....
T Consensus 80 ~~l~~~iD~~~Dgfv~~~El~~wi~~s~-k~~v~~---~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 80 GKLVPKIDSDSDGFVTESELKAWIMQSQ-KKYVVE---EAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHhhhcCCCCCceeHHHHHHHHHHHH-HHHHHH---HHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 678899999999988 333332221 122222 25677888999999999999999887531 11111
Q ss_pred --HH----HHHHHHHHhcCCCCCCcCHHHHHHHHHhhhccCcccCCchhHHHHhhhccccCchh
Q 008313 214 --AN----KKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI 271 (570)
Q Consensus 214 --~~----ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~~~~~~~~~~~~~l~~~d~~~dl~ 271 (570)
.. .=+..|+.+|.|+||.+|.+||..+| +++.++.|... +|.+.|.+.|.++|+.
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL--HPEe~p~M~~i-Vi~Etl~d~Dkn~DG~ 216 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL--HPEEHPHMKDI-VIAETLEDIDKNGDGK 216 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc--ChhhcchHHHH-HHHHHHhhcccCCCCc
Confidence 11 12667999999999999999999999 88888888884 8999999999888864
No 166
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=72.02 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=63.3
Q ss_pred hhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 175 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 175 ~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..+......+|+.+|.|.||+|++.|+..+|..+|.+.+.--+++++++.|-|.||+||+.||.-++...
T Consensus 95 rkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 95 RKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 3345567889999999999999999999999999998888889999999999999999999999888664
No 167
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.85 E-value=1.7e-05 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.581 Sum_probs=25.8
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
++++|+.+|.|+||+|+++||..++.++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 7899999999999999999999998753
No 168
>PLN02964 phosphatidylserine decarboxylase
Probab=97.83 E-value=5.5e-05 Score=84.37 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=67.9
Q ss_pred ChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhC-CcchHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHhhhccC
Q 008313 173 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANK---KEELFKAADKNGDGVVSVDELAALLALQQEKE 248 (570)
Q Consensus 173 ~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g-~~~~~~e---i~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~~ 248 (570)
.+..+...++++|+.+|.|++|.| +..++.++| ...++++ ++++|+.+|.|++|.|+++||..+|..+++..
T Consensus 137 f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~ 212 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLV 212 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCC
Confidence 445555668999999999999997 777788888 4666665 89999999999999999999999998876533
Q ss_pred cccCCchhHHHHhhhccccCc
Q 008313 249 PLMNCCPVCGETLEVADMVNT 269 (570)
Q Consensus 249 ~~~~~~~~~~~~l~~~d~~~d 269 (570)
++ ..+.+++...|.+++
T Consensus 213 se----EEL~eaFk~fDkDgd 229 (644)
T PLN02964 213 AA----NKKEELFKAADLNGD 229 (644)
T ss_pred CH----HHHHHHHHHhCCCCC
Confidence 32 235566555554433
No 169
>PLN02230 phosphoinositide phospholipase C 4
Probab=97.78 E-value=4.7e-05 Score=83.95 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=72.7
Q ss_pred eEEEEEEEeee-c--CC---------CCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEE
Q 008313 54 GIALLTLISAE-M--KF---------KDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVF 116 (570)
Q Consensus 54 g~l~v~v~~~~-l--~~---------~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~ 116 (570)
..|.|+|+.+. . .+ ..||||.|.+-+ ...||+++.++.||+|||++.|.+....-..++|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 57899999987 1 11 248999998532 4468999999999999996655444323346999999
Q ss_pred ecccCCcccccCCceeeeeeccccCCccccchhhccCCCCc
Q 008313 117 ETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~ 157 (570)
|.|..+++|++|...+++..+.. + -+...++|.++.
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~-G----yR~V~L~~~~G~ 584 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQ-G----IHAVPLFNRKGV 584 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhC-c----cceEeccCCCcC
Confidence 99999999999999999999532 1 234556665543
No 170
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.78 E-value=2.4e-05 Score=61.15 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=45.9
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 205 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l 205 (570)
.+.|..+|.+++|.| +..++..+....+.......++.+|+.+|.|+||.|+++||..++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 468999999999998 555555554322233344668888999999999999999999874
No 171
>PLN02222 phosphoinositide phospholipase C 2
Probab=97.75 E-value=7.9e-05 Score=82.05 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=72.1
Q ss_pred eEEEEEEEeee---c--------C-CCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEE
Q 008313 54 GIALLTLISAE---M--------K-FKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVF 116 (570)
Q Consensus 54 g~l~v~v~~~~---l--------~-~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~ 116 (570)
..|.|+|+.+. + . ...||||.|.+- ....||+++++|.||+|||.+.|.+....-..++|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57899999885 1 1 134889988763 25679999999999999996666544333346999999
Q ss_pred ecccCCcccccCCceeeeeeccccCCccccchhhccCCCC
Q 008313 117 ETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 117 D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
|+|..+.+|++|...+++..+.. + -+...++|.++
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~-G----yR~V~L~~~~g 566 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQ-G----IRAFPLHSRKG 566 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhC-c----cceEEccCCCc
Confidence 99999999999999999998532 1 23445555544
No 172
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.73 E-value=5.2e-05 Score=83.82 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=75.2
Q ss_pred EEEEEEEeeec----------CCCCCeEEEEEeCC-----ceeeee-cccCCCCCccCcceeeEEecCCCceEEEEEEec
Q 008313 55 IALLTLISAEM----------KFKDKWLACVSLGE-----QTCRTA-ISDNTDKPIWNSEKKLLLETNGPHVARISVFET 118 (570)
Q Consensus 55 ~l~v~v~~~~l----------~~~~dp~~~v~~g~-----~~~rT~-vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~ 118 (570)
.|.|+|..+.. +-.+||+|.|...+ ...+|+ |..|+-||.|+|++.|.+....-..++|.|+|.
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 79999999981 33679999998543 455899 667789999999777766655455699999999
Q ss_pred ccCCcccccCCceeeeeeccccCCccccchhhccCCCCc
Q 008313 119 NRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (570)
Q Consensus 119 D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~ 157 (570)
|..+++|++|+..+++.++.. + -+...+++.++.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~-G----yRhVpL~~~~G~ 730 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQ-G----YRHVPLLSREGE 730 (746)
T ss_pred CCCCcccccceeeccHHHhhC-c----eeeeeecCCCCc
Confidence 999999999999999999531 1 245556665443
No 173
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.70 E-value=1.5e-05 Score=86.68 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=65.2
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCC-------ceeeeecccCCCCCccCcceeeEEecCC----CceEEEEEEe
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGE-------QTCRTAISDNTDKPIWNSEKKLLLETNG----PHVARISVFE 117 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~-------~~~rT~vik~tLNP~Wne~~~~~~~~~~----~~~l~~~v~D 117 (570)
.+-|.|..|+. .+-|||||+|.++- .+.||.|+++||||+++|.|.|.+.-+. ...+.|+|+|
T Consensus 948 ~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMD 1027 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMD 1027 (1103)
T ss_pred chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeec
Confidence 45566666662 55668999998763 4569999999999999996666543322 2359999999
Q ss_pred cccCCcccccCCceeeeeec
Q 008313 118 TNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 118 ~D~~~~~D~iG~~~i~l~el 137 (570)
+|-++.||+-|++.+.+.++
T Consensus 1028 HD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1028 HDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred cceecccccchHHHHhhCCC
Confidence 99999999999999999987
No 174
>PLN02270 phospholipase D alpha
Probab=97.69 E-value=9.2e-05 Score=83.52 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=68.4
Q ss_pred CCCeEEEEEeCC-ceeeeecccCC-CCCccCcceeeEEecC-CCceEEEEEEecccCCcccccCCceeeeeeccccCCcc
Q 008313 68 KDKWLACVSLGE-QTCRTAISDNT-DKPIWNSEKKLLLETN-GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDA 144 (570)
Q Consensus 68 ~~dp~~~v~~g~-~~~rT~vik~t-LNP~Wne~~~~~~~~~-~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~ 144 (570)
.+|||+.|.+++ .+-||+|+.+. .||+|+| .|.+.+. .-..+.|.|-|.|-++. .+||.+.++.+++++.+..
T Consensus 46 ~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e--~f~i~~ah~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i- 121 (808)
T PLN02270 46 ESQLYATIDLEKARVGRTRKIENEPKNPRWYE--SFHIYCAHMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEV- 121 (808)
T ss_pred CCCceEEEEeCCcEEEEEeecCCCCCCCcccc--ceEEeeccCcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCcc-
Confidence 679999999976 56699999884 7999999 5555543 23459999999999888 5999999999999876555
Q ss_pred ccchhhccCCCC
Q 008313 145 DSEVFDLLDPSS 156 (570)
Q Consensus 145 ~~~~F~l~D~~~ 156 (570)
..||++++.++
T Consensus 122 -~~~~~~~~~~~ 132 (808)
T PLN02270 122 -DRWVEILDNDK 132 (808)
T ss_pred -ccEEeccCCCC
Confidence 67899988764
No 175
>PLN02228 Phosphoinositide phospholipase C
Probab=97.58 E-value=0.00015 Score=79.77 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=73.1
Q ss_pred eEEEEEEEeeec-------C----C-CCCeEEEEEeC-----CceeeeecccCCCCCcc-CcceeeEEecCCCceEEEEE
Q 008313 54 GIALLTLISAEM-------K----F-KDKWLACVSLG-----EQTCRTAISDNTDKPIW-NSEKKLLLETNGPHVARISV 115 (570)
Q Consensus 54 g~l~v~v~~~~l-------~----~-~~dp~~~v~~g-----~~~~rT~vik~tLNP~W-ne~~~~~~~~~~~~~l~~~v 115 (570)
..|.|+|+++.. . + ..||||.|.+- ...+||++++++.||+| |+.+.|.+....-..++|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 468999999862 1 1 25889998753 25679999999999999 99666654433334699999
Q ss_pred EecccCCcccccCCceeeeeeccccCCccccchhhccCCCCc
Q 008313 116 FETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSS 157 (570)
Q Consensus 116 ~D~D~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~~ 157 (570)
+|.|..+.+|++|...+++..+.. + -+...++|.++.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~-G----YR~VpL~~~~G~ 547 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKS-G----VRAVRLHDRAGK 547 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhC-C----eeEEEccCCCCC
Confidence 999999999999999999998531 1 234566666554
No 176
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.56 E-value=7.7e-05 Score=81.37 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=74.2
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeC-CceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCccccc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLG-EQTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLE 127 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g-~~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~i 127 (570)
.|+|+|.+|+. .+++|||+.|.+. +.++||.+|.++|-|-|-|++.+.++... +-+.|-|||.| ++.+|.|
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce-eeEEEEEeccc-ccccccc
Confidence 57889999984 6688999999985 58899999999999999995555555432 34899999999 9999999
Q ss_pred CCceeeeeeccccCCccccchhhcc
Q 008313 128 GYCEVDLLEFLTKDSDADSEVFDLL 152 (570)
Q Consensus 128 G~~~i~l~ells~~~~~~~~~F~l~ 152 (570)
|..-|.-+++-..... ..||.+-
T Consensus 84 GKvai~re~l~~~~~~--d~W~~L~ 106 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGK--DTWFSLQ 106 (800)
T ss_pred ceeeeeHHHHhhCCCC--ccceecc
Confidence 9999988886433322 4577664
No 177
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.47 E-value=0.00058 Score=58.15 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=46.2
Q ss_pred EEEEEEeeec---------CCCCCeEEEEEeCCc-eeeeecccCCCCCccCcceeeEEecCCCceEEEEEEeccc
Q 008313 56 ALLTLISAEM---------KFKDKWLACVSLGEQ-TCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR 120 (570)
Q Consensus 56 l~v~v~~~~l---------~~~~dp~~~v~~g~~-~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~ 120 (570)
|.|+|.+++. .+..+|||.++.++. +.||+.. .||.|||.|.+.+ +....+.+.|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V--dk~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV--EKNNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe--cCCcEEEEEEEeCCC
Confidence 3567777772 446799999999886 8899874 7999999554444 456789999999976
No 178
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.45 E-value=0.00033 Score=77.28 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=63.4
Q ss_pred EEEEEEEeeec----CCCC-CeEEEEEe-C----Ccee-eeecccCCCCCccC-cceeeEEecCCCceEEEEEEecccCC
Q 008313 55 IALLTLISAEM----KFKD-KWLACVSL-G----EQTC-RTAISDNTDKPIWN-SEKKLLLETNGPHVARISVFETNRLS 122 (570)
Q Consensus 55 ~l~v~v~~~~l----~~~~-dp~~~v~~-g----~~~~-rT~vik~tLNP~Wn-e~~~~~~~~~~~~~l~~~v~D~D~~~ 122 (570)
.|.|+|++||- |++. -|+|.|.. | ..++ .|.|+.|.|||+|| |.+.|.+.+..-..|+|.|+|.|.++
T Consensus 1066 ~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs 1145 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFS 1145 (1267)
T ss_pred EEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccC
Confidence 67899999982 4433 38888864 2 2445 55668899999999 75555555544456999999999999
Q ss_pred cccccCCceeeeeec
Q 008313 123 KSNLEGYCEVDLLEF 137 (570)
Q Consensus 123 ~~D~iG~~~i~l~el 137 (570)
...+||.+..++..+
T Consensus 1146 ~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1146 DPNFLAQATYPVKAI 1160 (1267)
T ss_pred Ccceeeeeecchhhh
Confidence 999999999988875
No 179
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.40 E-value=0.00016 Score=47.73 Aligned_cols=26 Identities=46% Similarity=0.744 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008313 217 KEELFKAADKNGDGVVSVDELAALLA 242 (570)
Q Consensus 217 i~~~F~~~D~d~dG~Is~dEf~~~l~ 242 (570)
++.+|+.+|.|++|+|+.+||.++|+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 34445555555555555555555444
No 180
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.40 E-value=0.00033 Score=74.16 Aligned_cols=52 Identities=29% Similarity=0.462 Sum_probs=46.9
Q ss_pred HHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 179 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 179 ~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
..++.+|+.+|.|+||.|+.+||.. +..+|..+|.|+||.|+++||.+++..
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4589999999999999999999942 478999999999999999999998865
No 181
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.37 E-value=0.00051 Score=50.31 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=41.8
Q ss_pred ceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 195 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 195 ~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
++++.|+..+|..+...++++-+..+|+..|++++|++..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999998764
No 182
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.36 E-value=0.00096 Score=55.51 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=53.2
Q ss_pred HHHHHHhccccCCCCCceeHHHHHHHHHH-h----CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 179 SFARRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 179 ~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~----g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..+-.+|..|..+ .+.++..||..++.. + .....++.++++|+..|.|+||.|+|.||..++..+
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4466778888743 569999999999976 3 334467789999999999999999999999998765
No 183
>PF14658 EF-hand_9: EF-hand domain
Probab=97.32 E-value=0.00039 Score=53.99 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=51.1
Q ss_pred chhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCC-CceeHHHHHHHHHH
Q 008313 147 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQD-GQLSFKEFSDLISA 207 (570)
Q Consensus 147 ~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~d-G~Is~~Ef~~~l~~ 207 (570)
..|.++|+++.|.| +..++++++...|.+.+ ++.+.+.+|.++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~---Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESE---LQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHH---HHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 46899999999987 77788899876788777 9999999999998 99999999999864
No 184
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.31 E-value=0.00069 Score=59.96 Aligned_cols=71 Identities=11% Similarity=0.218 Sum_probs=64.0
Q ss_pred HHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCC--CCCCcCHHHHHHHHHhhhcc
Q 008313 177 EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKN--GDGVVSVDELAALLALQQEK 247 (570)
Q Consensus 177 e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d--~dG~Is~dEf~~~l~~l~e~ 247 (570)
....++++|..||..+||+|+.....+.|.++|.+.++.++.+....++++ +-.+|+|++|.-+++.+...
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 335599999999999999999999999999999999999999999999888 56789999999999887654
No 185
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.29 E-value=0.00027 Score=46.57 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=25.6
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHH-HhC
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLIS-AFG 209 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~-~~g 209 (570)
++.+|+.+|.|++|+|+.+||..+|. ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 78899999999999999999999998 564
No 186
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.27 E-value=0.00051 Score=71.26 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=57.8
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHHHHHhC----CcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFG----NQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g----~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
+..+..+|+.+|.|++|.||.+||.++..-++ ...+++++.++-+.+|.|+||.|++.||.+++.-
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 34577899999999999999999999877654 4578899999999999999999999999998854
No 187
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.25 E-value=0.0009 Score=57.47 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 174 IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 174 t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
++++......+|+..|. ++|.|+-++...++..- .++.+.+..+|...|.|+||+++++||.-+|+-
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 34455668899999985 68999999999998654 488899999999999999999999999988753
No 188
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.23 E-value=0.00027 Score=44.18 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=12.5
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHH
Q 008313 218 EELFKAADKNGDGVVSVDELAAL 240 (570)
Q Consensus 218 ~~~F~~~D~d~dG~Is~dEf~~~ 240 (570)
+.+|+.+|.|+||.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34555555555555555555543
No 189
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.18 E-value=0.00031 Score=58.58 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=46.9
Q ss_pred cchhhccCC-CCchhH----HHHHhhh-cCCCCChh-hHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDLLDP-SSSNKI----VGKISLS-CSVEDPIE-TEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l~D~-~~~GkI----l~e~l~~-l~~~~~t~-~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
...|..+|. +++|.| +..++.. ++ ...+. .+ ++++++.+|.|+||.|+|+||..++..+
T Consensus 11 ~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~---v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 11 VSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEG---LEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHH---HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 578999999 889988 5566655 43 22333 44 9999999999999999999999998764
No 190
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.08 E-value=0.00051 Score=42.93 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.2
Q ss_pred HHHHhccccCCCCCceeHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLI 205 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l 205 (570)
++++|+.+|.|+||.||.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 191
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.04 E-value=0.00065 Score=56.59 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=47.5
Q ss_pred cchhhccC-CCCch-hH----HHHHhhh-----cCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDLLD-PSSSN-KI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l~D-~~~~G-kI----l~e~l~~-----l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
.+.|..+| .+++| .| +..++.. ++ ..+++.+ ++++++.+|.|++|.|+|+||..++..+
T Consensus 11 ~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~---v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 11 IDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEV---VDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57899998 78999 47 6666666 43 3556666 8999999999999999999999988653
No 192
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.00 E-value=0.00055 Score=77.50 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=73.3
Q ss_pred ceeeEEEEEEEeee-c-----CCCCCeEEEEEeCCce--eeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCC
Q 008313 51 DFAGIALLTLISAE-M-----KFKDKWLACVSLGEQT--CRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLS 122 (570)
Q Consensus 51 ~~~g~l~v~v~~~~-l-----~~~~dp~~~v~~g~~~--~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~ 122 (570)
.+.-.++|-+++|- + .++.|||+.+++|++. -+++.+.+||||++.+.+.+.+.......+.++|||+|.++
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 45567888888885 3 5578999999999977 48889999999999996666665556778999999999999
Q ss_pred cccccCCceeeeeec
Q 008313 123 KSNLEGYCEVDLLEF 137 (570)
Q Consensus 123 ~~D~iG~~~i~l~el 137 (570)
.+|.||+-.++++.-
T Consensus 690 ~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENR 704 (1105)
T ss_pred ccchhhceehhhhhc
Confidence 999999999998863
No 193
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=96.97 E-value=0.00051 Score=61.97 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=44.1
Q ss_pred echhhhhhhhhccccccc-----cccchhHHHHHHHHHHHHHHhhcCcccccchH
Q 008313 341 DVKIVMSMRAIYQSKIGL-----GLMDIGTKELLKSISEKQGRKMNSVESSKEIP 390 (570)
Q Consensus 341 ~~~~~~~~~~~y~~~~g~-----~~l~~~~~~~~~~~s~~~g~~~~s~~s~~~i~ 390 (570)
.+.|++||++++.+++|. +|+++.||..+|.|.+.||.|+.||.|+..+.
T Consensus 69 ~glvG~P~naiLdwpM~T~sG~a~F~~p~vN~~lK~ILn~W~~fL~sp~S~~vL~ 123 (141)
T PF12588_consen 69 VGLVGFPMNAILDWPMGTPSGYAFFLDPDVNAQLKKILNEWGEFLSSPASRSVLN 123 (141)
T ss_pred CCccccChHHHHHhhccChHHHHHHcCHHHHHHHHHHHHHHHHHcCChhhhcccc
Confidence 456778999999888874 78999999999999999999999999998663
No 194
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.95 E-value=0.00042 Score=58.72 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=45.2
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
.+.|..+|.+++|.| +..++... ..+..+ ++.+|..+|.+++|.|+++||..++..
T Consensus 13 ~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 13 EQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTL---LAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 778999999999998 44445443 244445 889999999999999999999998865
No 195
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.93 E-value=0.0013 Score=49.08 Aligned_cols=44 Identities=25% Similarity=0.415 Sum_probs=33.8
Q ss_pred HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 161 VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 161 l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
+..++..++...+++.+ +..+|..+|.|++|.|+++||..++..
T Consensus 10 ~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 10 FRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 44455444432266666 999999999999999999999999864
No 196
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.90 E-value=0.001 Score=51.69 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=43.1
Q ss_pred chhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 147 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 147 ~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
+.|..+|++++|.| +..++..++ .+..+ ++.+|+.+|.+++|.|+++||..++..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSG---LPRSV---LAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHH---HHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57889999999988 344444442 23444 899999999999999999999998865
No 197
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.88 E-value=0.00094 Score=56.25 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=44.1
Q ss_pred cchhhccC-CCCch-hH----HHHHhhhcC----CCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDLLD-PSSSN-KI----VGKISLSCS----VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l~D-~~~~G-kI----l~e~l~~l~----~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
.+.|..+| .+++| +| +..++.... .......+ ++++++.+|.|+||.|+++||..++..+
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~---v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPML---VDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHH---HHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56799999 67887 47 555554311 11223344 9999999999999999999999998765
No 198
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.67 E-value=0.0011 Score=72.69 Aligned_cols=56 Identities=16% Similarity=0.344 Sum_probs=44.5
Q ss_pred eeecccCCCCCccCcceeeEEecCCCceEEEEEEeccc---------------------------------CCc---ccc
Q 008313 83 RTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNR---------------------------------LSK---SNL 126 (570)
Q Consensus 83 rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~---------------------------------~~~---~D~ 126 (570)
-|+|.++||||.|+|.|+|.++......+.+.+||+|. -+. +|+
T Consensus 180 atsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDF 259 (1103)
T KOG1328|consen 180 ATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDF 259 (1103)
T ss_pred hcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccc
Confidence 58999999999999966666665555568999999981 122 789
Q ss_pred cCCceeeeeecc
Q 008313 127 EGYCEVDLLEFL 138 (570)
Q Consensus 127 iG~~~i~l~ell 138 (570)
+|...+++.|+-
T Consensus 260 LGciNipl~EiP 271 (1103)
T KOG1328|consen 260 LGCINIPLAEIP 271 (1103)
T ss_pred ccccccchhcCC
Confidence 999999999974
No 199
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.58 E-value=0.0024 Score=53.57 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=46.0
Q ss_pred cchhhccC-CCCch-hH----HHHHhhh-cCC---CCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhC
Q 008313 146 SEVFDLLD-PSSSN-KI----VGKISLS-CSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 209 (570)
Q Consensus 146 ~~~F~l~D-~~~~G-kI----l~e~l~~-l~~---~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g 209 (570)
.+.|..+| .+++| +| +..++.. ++. ..++..+ ++++|+.+|.|++|.|+++||..++..+.
T Consensus 12 ~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~---v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 12 INVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADA---VDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 67999997 99999 47 4445543 211 1344555 89999999999999999999999887643
No 200
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.55 E-value=0.0016 Score=54.84 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=45.6
Q ss_pred cchhhccCC-CC-chhH----HHHHhhh-cC---CCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhC
Q 008313 146 SEVFDLLDP-SS-SNKI----VGKISLS-CS---VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 209 (570)
Q Consensus 146 ~~~F~l~D~-~~-~GkI----l~e~l~~-l~---~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g 209 (570)
...|..+|. ++ +|+| +..++.. ++ ...++..+ ++.+++.+|.|++|.|+++||..++...+
T Consensus 11 ~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~e---i~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 11 ILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMA---VDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 568999997 86 6988 4444443 10 12345555 89999999999999999999999987644
No 201
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.43 E-value=0.0033 Score=52.36 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=44.8
Q ss_pred cchhhccCC-CC-chhH----HHHHhhh---cCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDLLDP-SS-SNKI----VGKISLS---CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l~D~-~~-~GkI----l~e~l~~---l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
-..|..++. ++ +|.| +..++.. + +...++++ +.++++.+|.|++|.|+++||..++..+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~e---v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAE---IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHH---HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 457888887 55 6777 5555532 3 34566666 8999999999999999999999988654
No 202
>PLN02352 phospholipase D epsilon
Probab=96.37 E-value=0.0087 Score=67.77 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=67.3
Q ss_pred eEEEEEEEeeec-----------CCCCCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccC
Q 008313 54 GIALLTLISAEM-----------KFKDKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRL 121 (570)
Q Consensus 54 g~l~v~v~~~~l-----------~~~~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~ 121 (570)
|.|.++|.+|+. +...|||+.|.+++ .+-|| .+.-||+|+|.|.+.|-...+..+.|+|-|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 677777777751 23339999999976 55688 666799999944444433222358899977
Q ss_pred CcccccCCceeeeeeccccCC-ccccchhhccCCCCc
Q 008313 122 SKSNLEGYCEVDLLEFLTKDS-DADSEVFDLLDPSSS 157 (570)
Q Consensus 122 ~~~D~iG~~~i~l~ells~~~-~~~~~~F~l~D~~~~ 157 (570)
...+||.+.++.+++++.+. . ..||++++.+++
T Consensus 83 -~~~~ig~~~~p~~~~~~g~~~~--~~~~~~~~~~~~ 116 (758)
T PLN02352 83 -KCSILGRFHIQAHQIVTEASFI--NGFFPLIMENGK 116 (758)
T ss_pred -CCeEEEEEEEEHHHhhCCCccc--ceEEEcccCCCC
Confidence 25889999999999887544 3 568888887643
No 203
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.24 E-value=0.0051 Score=64.73 Aligned_cols=93 Identities=25% Similarity=0.328 Sum_probs=73.9
Q ss_pred hhccCCCCchhHHHHHhhhcCCCCChhhHHHHHHHHhc----cccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHh
Q 008313 149 FDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILS----IVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 224 (570)
Q Consensus 149 F~l~D~~~~GkIl~e~l~~l~~~~~t~~e~~~l~~if~----~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~ 224 (570)
|-.+|.+++|.|-++-+...+....+. .+++++|+ .+-.-.+|.+++++|+..+.++-.+.+..-++-.|+.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~tlt~---~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHTLTE---RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred HhhhccccccccCHHHHHHHhccchhh---HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 445788999988666565555434442 55899998 33445689999999999998887777888899999999
Q ss_pred cCCCCCCcCHHHHHHHHHhh
Q 008313 225 DKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 225 D~d~dG~Is~dEf~~~l~~l 244 (570)
|.+++|.|+.+|+..+....
T Consensus 361 Dld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred eccCCCcccHHHHHHHHHHH
Confidence 99999999999998887664
No 204
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.23 E-value=0.0016 Score=56.99 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=43.8
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHH
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 239 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~ 239 (570)
...+.-.|..+|.|+||.|+..|+..+...+ ...+.-++..|+..|.|+||.||..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3557788999999999999999998876544 23344578899999999999999999865
No 205
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.22 E-value=0.0039 Score=54.68 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=42.6
Q ss_pred cchhhccCCCCchhHHHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 205 (570)
Q Consensus 146 ~~~F~l~D~~~~GkIl~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l 205 (570)
.-.|..+|.+++|.|..+-+..+.. .+.+.. +..+|+.+|.|+||.||++||...+
T Consensus 51 ~w~F~~lD~d~DG~Ls~~EL~~~~l-~~~e~~---~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 51 GWMFNQLDGNYDGKLSHHELAPIRL-DPNEHC---IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHc-cchHHH---HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 5579999999999993333333321 333333 7889999999999999999999988
No 206
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.07 E-value=0.0053 Score=50.90 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=44.9
Q ss_pred cchhhccCC--CCchhH----HHHHhhh-cCC---CCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDLLDP--SSSNKI----VGKISLS-CSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l~D~--~~~GkI----l~e~l~~-l~~---~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
...|..+|. +++|.| +..++.. ++. ..++..+ ++.++..+|.+++|.|+++||..++...
T Consensus 11 ~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~e---i~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 11 IDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEA---VDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHH---HHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 678999999 799988 4444433 211 1123444 8999999999999999999999998654
No 207
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.05 E-value=0.0087 Score=60.19 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=73.0
Q ss_pred cchhhccCCCCchhH-HHHHhhhcCC-CCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH-hCCcchHHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI-VGKISLSCSV-EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEELFK 222 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~l~~l~~-~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~~~~~~ei~~~F~ 222 (570)
...|.++|.+.+|.+ +.+....+.. -.+.... ..++-+|+.|+.+.||.+.-.+|..+++. +| ...-.+-.+|.
T Consensus 262 ~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~-~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~ 338 (412)
T KOG4666|consen 262 APTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTP-VIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFP 338 (412)
T ss_pred hhhhheecCCCCCcccHHHHhhhheeeeCCCCcH-HHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccccch
Confidence 678999999998876 4443322221 1222222 34899999999999999999999988876 45 34445677899
Q ss_pred HhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 223 AADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 223 ~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
..+...+|+|++++|.+++...++
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEPN 362 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCch
Confidence 999999999999999999877654
No 208
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.90 E-value=0.012 Score=43.79 Aligned_cols=55 Identities=31% Similarity=0.488 Sum_probs=41.7
Q ss_pred chhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHH
Q 008313 147 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 205 (570)
Q Consensus 147 ~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l 205 (570)
..|..+|.+++|.| +..++..+. ....... +..+|+.+|.+++|.|+++||..++
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLG-EGLSEEE---IDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 46888999999987 444444443 2344444 7889999999999999999998765
No 209
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.0036 Score=65.35 Aligned_cols=96 Identities=19% Similarity=0.339 Sum_probs=64.7
Q ss_pred chhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH---h-----------
Q 008313 147 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA---F----------- 208 (570)
Q Consensus 147 ~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~---~----------- 208 (570)
-.|..+|+...|.| +.+++...... ..+.....++++-+.++.+ +-.||++||.+...- +
T Consensus 322 lEF~~~~~~~~g~Ise~DFA~~lL~~a~~-n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~ 399 (489)
T KOG2643|consen 322 LEFERFDKGDSGAISEVDFAELLLAYAGV-NSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYH 399 (489)
T ss_pred HHHHHhCcccccccCHHHHHHHHHHHccc-chHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 35777888887877 56666665432 2333335678888888776 344999998765332 1
Q ss_pred --CCcchH-----------------HHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 209 --GNQVAA-----------------NKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 209 --g~~~~~-----------------~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
|-.++. .-+.-+|..||.|+||.|+.+||..+|++.
T Consensus 400 ~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 400 MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 112222 223446888999999999999999999874
No 210
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.52 E-value=0.015 Score=35.95 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008313 217 KEELFKAADKNGDGVVSVDELAALLA 242 (570)
Q Consensus 217 i~~~F~~~D~d~dG~Is~dEf~~~l~ 242 (570)
++.+|+.+|.+++|.|+++||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666666666666666666654
No 211
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.32 E-value=0.015 Score=48.37 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=41.3
Q ss_pred cchhhccCCC--CchhH----HHHHhhhcCCCCCh----hhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDLLDPS--SSNKI----VGKISLSCSVEDPI----ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l~D~~--~~GkI----l~e~l~~l~~~~~t----~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
-..|..++.+ ++|+| +..++.......++ +.+ +..+|+.+|.|++|.|+++||..++..+
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~---v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKA---IDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHH---HHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3467777755 35666 44555322122222 344 8999999999999999999999998654
No 212
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.31 E-value=0.018 Score=67.86 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=55.6
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhH---HHHHHHHhccccCCCCCceeHHHHHHHHHHh--CCcchHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETE---KSFARRILSIVDYNQDGQLSFKEFSDLISAF--GNQVAANK 216 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e---~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~--g~~~~~~e 216 (570)
.-+|+.||.+++|.+ +...++++++.-|.-++ .+.+++++..+|++.+|+|+..|+...|.+- ..-.+.++
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~e 2335 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEE 2335 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHH
Confidence 345666777777765 44455555553322211 2336667777777777777777777766542 11234556
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 217 KEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 217 i~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
|+.+|+.+|. +.-+|+.+|+.+-|
T Consensus 2336 IE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2336 IEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred HHHHHHHhhc-CCccccHHHHHhcC
Confidence 7777777776 66667766665544
No 213
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.26 E-value=0.022 Score=47.55 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=40.0
Q ss_pred cchhhc-cCCCCch-hH----HHHHhhhcC----CCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 146 SEVFDL-LDPSSSN-KI----VGKISLSCS----VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 146 ~~~F~l-~D~~~~G-kI----l~e~l~~l~----~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
...|.. .|.++++ +| +..++.... .....+ ..+.++++.+|.|+||.|+++||..++..+
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~---~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDP---GVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCH---HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457777 6666765 66 333332221 111222 348999999999999999999999988664
No 214
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.19 E-value=0.016 Score=63.78 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCCCCeEEEEEeCC----ceeeeecccCCCCCccCcceeeEEecC---------------CCceEEEEEEe-cccCCccc
Q 008313 66 KFKDKWLACVSLGE----QTCRTAISDNTDKPIWNSEKKLLLETN---------------GPHVARISVFE-TNRLSKSN 125 (570)
Q Consensus 66 ~~~~dp~~~v~~g~----~~~rT~vik~tLNP~Wne~~~~~~~~~---------------~~~~l~~~v~D-~D~~~~~D 125 (570)
+..+|||+.++... +..+|.++++|-||.|+|.+.|.+... ..-.+++++|| ++....++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 45689999998765 345999999999999999654443221 12358899998 77788899
Q ss_pred ccCCceeeeeeccccCCccccchhhcc
Q 008313 126 LEGYCEVDLLEFLTKDSDADSEVFDLL 152 (570)
Q Consensus 126 ~iG~~~i~l~ells~~~~~~~~~F~l~ 152 (570)
+.|+..+++..+...... ..||.+.
T Consensus 228 FlGevrv~v~~~~~~s~p--~~W~~Lq 252 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSP--AAWYYLQ 252 (800)
T ss_pred hceeEEeehhhhhhccCc--cceEEEe
Confidence 999999999886522211 4566553
No 215
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.092 Score=45.07 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=44.2
Q ss_pred HHhccccCCCCCceeHHHHHHHHHHhCC---------c-chHHHHHHHHH----HhcCCCCCCcCHHHHHHH
Q 008313 183 RILSIVDYNQDGQLSFKEFSDLISAFGN---------Q-VAANKKEELFK----AADKNGDGVVSVDELAAL 240 (570)
Q Consensus 183 ~if~~~D~d~dG~Is~~Ef~~~l~~~g~---------~-~~~~ei~~~F~----~~D~d~dG~Is~dEf~~~ 240 (570)
-.|++.|.|++|.|+=-|+..++..... + .++.++..+.. .-|.|+||+|+|.||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3689999999999999999988865321 1 34556655544 458899999999999764
No 216
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.30 E-value=0.049 Score=33.53 Aligned_cols=27 Identities=33% Similarity=0.724 Sum_probs=24.3
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
++.+|+.+|.+++|.|++.||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678999999999999999999998864
No 217
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.25 E-value=0.025 Score=59.21 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=44.4
Q ss_pred ccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008313 188 VDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (570)
Q Consensus 188 ~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~ 242 (570)
+|.+.+|.|||.|+.=++.-+. .++...+-+|+.||.||||.|+.+||..+++
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 4567889999999988776655 4566778899999999999999999988764
No 218
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=94.24 E-value=0.055 Score=51.01 Aligned_cols=98 Identities=18% Similarity=0.283 Sum_probs=66.5
Q ss_pred cccCCccc-cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH-h-CC
Q 008313 138 LTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-F-GN 210 (570)
Q Consensus 138 ls~~~~~~-~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~-g~ 210 (570)
++..++.. ...|+.+|.+.+|.| ++.++..++. +.+..- ++.++..+|.|.||+|||.||.-++.. . |+
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~---lK~mikeVded~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLG---LKNMIKEVDEDFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHH---HHHHHHHhhcccccchhHHHHHHHHHHHhccc
Confidence 44555555 779999999999998 5556666643 444444 899999999999999999999988865 2 33
Q ss_pred cchHHHHHHHHH--HhcCCCCCCcCHHHHHH
Q 008313 211 QVAANKKEELFK--AADKNGDGVVSVDELAA 239 (570)
Q Consensus 211 ~~~~~ei~~~F~--~~D~d~dG~Is~dEf~~ 239 (570)
-..+..+..+=+ ..|....|..-...|-+
T Consensus 169 L~~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 169 LQEDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred cccchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 222333333322 35766666655555544
No 219
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=94.07 E-value=0.031 Score=63.91 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=52.9
Q ss_pred CCCeEEEEEeCCceeeeecccCCCCCccCcceee---EEec------CCCceEEEEEEecccCCcccccCCceeeee
Q 008313 68 KDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL---LLET------NGPHVARISVFETNRLSKSNLEGYCEVDLL 135 (570)
Q Consensus 68 ~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~---~~~~------~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ 135 (570)
-+||+..|.+-++..+|.++..||||.|++...| .+.. .....+.+++||.|+.+.+|++|.+.....
T Consensus 226 ~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~ 302 (1105)
T KOG1326|consen 226 ESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPY 302 (1105)
T ss_pred CCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceE
Confidence 4589999999999999999999999999994422 1111 012358899999999999999997655443
No 220
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.04 E-value=0.14 Score=60.85 Aligned_cols=72 Identities=21% Similarity=0.364 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcch-------HHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 173 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVA-------ANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 173 ~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~-------~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
.+++......-+|+.||.+.+|.+++.+|...|.++|..++ +.++++++...|++.+|+|+..|+.++|-..
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 45555556788999999999999999999999999886652 3489999999999999999999999999664
No 221
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=93.43 E-value=0.36 Score=50.77 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 217 KEELFKAADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 217 i~~~F~~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
++.+|+..|.|+.|.||.+||+....-+..
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~s 578 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSS 578 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHh
Confidence 577899999999999999999998876554
No 222
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=92.98 E-value=0.1 Score=50.63 Aligned_cols=66 Identities=32% Similarity=0.374 Sum_probs=50.3
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHHHHH-hCCc--chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQ--VAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~~--~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
+..+..+|...|.|.||+|+-.|+...+.. ..+. ...++-+-.|+..|.|+||.|+.+||.--+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 355889999999999999999999887643 2222 22344566788899999999999999765543
No 223
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=91.96 E-value=0.12 Score=44.45 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=39.4
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLIS 206 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~ 206 (570)
..+|...++ .+|.| ...++... ....+. +..++...|.|++|+++++||.-+|.
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDV---LAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHH---HHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHH---HHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 678988886 46777 33344333 233444 89999999999999999999998874
No 224
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.89 E-value=0.24 Score=40.41 Aligned_cols=62 Identities=13% Similarity=0.304 Sum_probs=51.3
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHH-hCC-cchHHHHHHHHHHhcCC----CCCCcCHHHHHHHHHh
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISA-FGN-QVAANKKEELFKAADKN----GDGVVSVDELAALLAL 243 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~-~~~~~ei~~~F~~~D~d----~dG~Is~dEf~~~l~~ 243 (570)
++.+|+.+-. +.+.|+.++|...|.. .+. ..+.+++..++..+..+ ..+.+|+++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6788999955 7889999999999976 444 46889999999998655 4789999999999955
No 225
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=91.86 E-value=0.45 Score=50.77 Aligned_cols=59 Identities=31% Similarity=0.477 Sum_probs=41.5
Q ss_pred HhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 184 ILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 184 if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
+-...|.-+||.|||+||...=.-++ .++...+.+|+.||+.++|.+|++++.+++...
T Consensus 79 la~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 79 LASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 33445677788888888876543333 335566778888888888888888888887664
No 226
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.74 E-value=0.24 Score=50.51 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
+.-||..+|.|.||.++..|+..+-. + -.+.-++.+|...|...||.||-+|+...+...
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~l--d--knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIEL--D--KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhc--c--CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 88899999999999999999988752 2 335568999999999999999999999999664
No 227
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.58 E-value=0.18 Score=42.05 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=27.0
Q ss_pred HHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 179 SFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 179 ~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
..++++|+.+|.|+||.|+|+||..++..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 458999999999999999999999998664
No 228
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.54 E-value=0.35 Score=49.20 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=56.5
Q ss_pred eEEEEEEEeee-c-----CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEEecC----CCceEEEEEEec
Q 008313 54 GIALLTLISAE-M-----KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLLETN----GPHVARISVFET 118 (570)
Q Consensus 54 g~l~v~v~~~~-l-----~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~~~~----~~~~l~~~v~D~ 118 (570)
.-+.+.++.+. + ..-+|||+...+-. -.+||.+.|+|+||++|+ ++.++.. ....+.+.++|.
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~--~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDE--EFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccc--cccccCCccchhcceEEEeeccc
Confidence 45555555533 2 44678998887531 455899999999999999 5555433 234588999999
Q ss_pred ccCCcccccCCceeeee
Q 008313 119 NRLSKSNLEGYCEVDLL 135 (570)
Q Consensus 119 D~~~~~D~iG~~~i~l~ 135 (570)
+.-..+|.+|-......
T Consensus 311 ~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCCcCccCCCccccccc
Confidence 98889999986554433
No 229
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.07 E-value=0.052 Score=55.02 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=59.9
Q ss_pred EEEEEEEeeec------CCCCCeEEEEEeCC-----ceeeeecccCCCCCccCcceeeEE--ecC-CCceEEEEEEeccc
Q 008313 55 IALLTLISAEM------KFKDKWLACVSLGE-----QTCRTAISDNTDKPIWNSEKKLLL--ETN-GPHVARISVFETNR 120 (570)
Q Consensus 55 ~l~v~v~~~~l------~~~~dp~~~v~~g~-----~~~rT~vik~tLNP~Wne~~~~~~--~~~-~~~~l~~~v~D~D~ 120 (570)
.+..++..|+. ..--|||+++.++- ..+||++..++|||+|++...... ..+ ....++..|.|.+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~ 173 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK 173 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence 45556666652 33558999987642 447999999999999999443322 222 33458889999999
Q ss_pred CCcccccCCceeeeeec
Q 008313 121 LSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 121 ~~~~D~iG~~~i~l~el 137 (570)
+..++.+|+..+.+..+
T Consensus 174 ~~~~~sqGq~r~~lkKl 190 (362)
T KOG1013|consen 174 KTHNESQGQSRVSLKKL 190 (362)
T ss_pred cccccCcccchhhhhcc
Confidence 99999999988877774
No 230
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=90.59 E-value=0.23 Score=52.95 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=39.4
Q ss_pred cchhhccCCCCchhH-HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI-l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
...|..+|.+++|.| ..+++ . ...+|+.+|.|+||.|+++||..++..
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~-----------~---~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWL-----------G---SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHH-----------H---HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 567999999999988 44432 1 467899999999999999999998854
No 231
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=89.95 E-value=0.55 Score=45.69 Aligned_cols=57 Identities=32% Similarity=0.425 Sum_probs=30.7
Q ss_pred hccccCCCCCceeHHHHHHHHH-----HhCCcchHHHH----HHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 185 LSIVDYNQDGQLSFKEFSDLIS-----AFGNQVAANKK----EELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 185 f~~~D~d~dG~Is~~Ef~~~l~-----~~g~~~~~~ei----~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
...+|.|||..+|..||..+.- ..|..+.+..+ ++.=+.+|.|.||.+|++|+..++
T Consensus 242 vrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 242 VRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred HHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 3456677777777777765431 12333333222 222234567777777777776664
No 232
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=89.84 E-value=0.2 Score=58.49 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=67.7
Q ss_pred eEEEEEEEeeec------CCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeE---EecCCCceEEEEEEecc
Q 008313 54 GIALLTLISAEM------KFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLL---LETNGPHVARISVFETN 119 (570)
Q Consensus 54 g~l~v~v~~~~l------~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~---~~~~~~~~l~~~v~D~D 119 (570)
|.|.|-|.-++. |-..||||...+- ....||+|+++|-||.+||..... .+....+.|.++||..+
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~ 1603 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNG 1603 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccc
Confidence 555555555551 4467899987752 255689999999999999944322 22334467999999999
Q ss_pred cCCcccccCCceeeeeeccccCCccccchhhc
Q 008313 120 RLSKSNLEGYCEVDLLEFLTKDSDADSEVFDL 151 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ells~~~~~~~~~F~l 151 (570)
.+..+-++|.+.++|.++-...+. ..||.+
T Consensus 1604 ~~~en~~lg~v~i~L~~~~l~kE~--~~Wy~l 1633 (1639)
T KOG0905|consen 1604 GLLENVFLGGVNIPLLKVDLLKES--VGWYNL 1633 (1639)
T ss_pred ceeeeeeeeeeecchhhcchhhhh--cceeec
Confidence 999999999999999986221111 357665
No 233
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=89.81 E-value=0.54 Score=47.70 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=57.2
Q ss_pred HHHHHHhccccCCCCCceeHHHHHHHHHH-hCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 179 SFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 179 ~~l~~if~~~D~d~dG~Is~~Ef~~~l~~-~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
..++.+|..||.+++|.+++.|....+.- .+...+.+-+.-+|+.|+.+.||.+...+|--+|+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 34789999999999999999998888766 466778889999999999999999999998888765
No 234
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=89.13 E-value=0.61 Score=49.80 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=40.2
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCC-----------------------------------cchHHHHHHHHHHhc
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGN-----------------------------------QVAANKKEELFKAAD 225 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~-----------------------------------~~~~~ei~~~F~~~D 225 (570)
...+|+.||..++|.+|++++.+++.+... ....+..++.|+..|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666544211 012334577788888
Q ss_pred CCCCCCcCHHHHHHHHHhh
Q 008313 226 KNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 226 ~d~dG~Is~dEf~~~l~~l 244 (570)
+.++|.||.-+|..+|.+.
T Consensus 190 ~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 190 KAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred ccCCCeeeeechHhhhhhh
Confidence 8888888887777776553
No 235
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=89.11 E-value=0.8 Score=33.77 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=29.4
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh
Q 008313 162 GKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 208 (570)
Q Consensus 162 ~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~ 208 (570)
..++..+.. ...+.. +..+|+..|.+++|.+..+||......+
T Consensus 8 k~lLk~~NI-~~~~~y---A~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 8 KKLLKMMNI-EMDDEY---ARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHTT-----HHH---HHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHcc-CcCHHH---HHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 345555543 334444 8899999999999999999999887653
No 236
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=0.95 Score=48.30 Aligned_cols=71 Identities=13% Similarity=0.270 Sum_probs=59.7
Q ss_pred CChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 172 DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 172 ~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..+.++++..-.-|+.+-.|-+|+|+=.--..++. ..+++-+|+..+|+..|.|.||.++.+||+..|+-.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFt--KSklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFT--KSKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhh--hccCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 35666777777889999999999999887777764 356788999999999999999999999999998653
No 237
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.19 E-value=2.1 Score=39.99 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 214 ANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 214 ~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
.+..+++|..+++.+.+.+|..|+.++++..
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 4467888999988888889999998888663
No 238
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=87.86 E-value=0.47 Score=48.07 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=52.2
Q ss_pred HHHHHHhccccCCCCCceeHHHHHHHHHHh-CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhcc
Q 008313 179 SFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEK 247 (570)
Q Consensus 179 ~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~-g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e~ 247 (570)
..+.-.|..+|.|.++.|+..|+..+-.-+ ...-...-.+.+|+..|.|+|-+||++|+...|....+.
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 346667999999999999988865443222 122344557889999999999999999999998665543
No 239
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=86.06 E-value=3.3 Score=38.20 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=67.8
Q ss_pred eEEEEEEEeeec-----C---C--CCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecC-------------CCce
Q 008313 54 GIALLTLISAEM-----K---F--KDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETN-------------GPHV 110 (570)
Q Consensus 54 g~l~v~v~~~~l-----~---~--~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~-------------~~~~ 110 (570)
-.|.|+|.+++. . . ++-..+.+.++++.|+|.-+.-+-+|.+++.|.|.++.+ ....
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 488999999992 1 2 344456677899999999999999999999655554333 1335
Q ss_pred EEEEEEecccCCcccccCCceeeeeeccccCCc
Q 008313 111 ARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD 143 (570)
Q Consensus 111 l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~ 143 (570)
+.+-+.-.|..+...++|...+++..++..+..
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~ 121 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG 121 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccCCC
Confidence 778887788777778899999999988765543
No 240
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=85.16 E-value=1 Score=47.89 Aligned_cols=90 Identities=10% Similarity=0.214 Sum_probs=59.9
Q ss_pred cchhhc----cCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHh-------C-
Q 008313 146 SEVFDL----LDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-------G- 209 (570)
Q Consensus 146 ~~~F~l----~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~-------g- 209 (570)
.++|.. .-...+|++ +-.++.++.. .-++.. ++-.|+.+|.+++|.|+..|+.-+.... +
T Consensus 314 dRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~t~~S---leYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~ 389 (493)
T KOG2562|consen 314 DRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KDTPAS---LEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQ 389 (493)
T ss_pred HHHHhhccccceeeecCcccHHHHHHHHHHhcc-CCCccc---hhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCC
Confidence 456662 222345666 3344555533 334444 7889999999999999999987665432 2
Q ss_pred Ccch-HHHHHHHHHHhcCCCCCCcCHHHHHH
Q 008313 210 NQVA-ANKKEELFKAADKNGDGVVSVDELAA 239 (570)
Q Consensus 210 ~~~~-~~ei~~~F~~~D~d~dG~Is~dEf~~ 239 (570)
+.++ ++-+.+++...-....++||..+|..
T Consensus 390 e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 390 EALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 1222 34467788888888899999999987
No 241
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=84.32 E-value=2.2 Score=48.23 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=58.6
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 221 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F 221 (570)
..+|...|.+++|.+ ...++..+.. ... ...++.+|+..|..+++.+...++......+.... ++..+|
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~-~l~---~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f 211 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNV-QLS---ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLF 211 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHH-hhh---HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHH
Confidence 345777777777776 2233333321 122 23366777777777778888888877766555332 677777
Q ss_pred HHhcCCCCCCcCHHHHHHHHHhhh
Q 008313 222 KAADKNGDGVVSVDELAALLALQQ 245 (570)
Q Consensus 222 ~~~D~d~dG~Is~dEf~~~l~~l~ 245 (570)
..+-.+ .++++.+++..++....
T Consensus 212 ~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 212 VQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHhCC-CCccCHHHHHHHHHHhc
Confidence 776544 77888888888887653
No 242
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.43 E-value=1.2 Score=50.09 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=51.2
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 242 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~ 242 (570)
.+++|+.+|+...|++|-..-+.+|.. ..++...+..++...|.|+||+++.|||+-.|.
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 678999999999999998888887743 457888999999999999999999999976654
No 243
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=82.60 E-value=0.8 Score=39.97 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=32.1
Q ss_pred hhhccCCCCchhHHHHHhhhcCC-CCChhhHHHHHHHHhccccCCCCCceeHHHHHH
Q 008313 148 VFDLLDPSSSNKIVGKISLSCSV-EDPIETEKSFARRILSIVDYNQDGQLSFKEFSD 203 (570)
Q Consensus 148 ~F~l~D~~~~GkIl~e~l~~l~~-~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~ 203 (570)
.|..+|.+++|.+...-+..+.. -.+.+.- ++..|+..|.|+||.||+.|+..
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C---~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPLMPPEHC---ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTTSTTGGG---HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHHhhhHHH---HHHHHHHcCCCCCCCCCHHHHcc
Confidence 49999999999873332222211 1333444 67788999999999999999864
No 244
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=81.62 E-value=2.5 Score=39.59 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=34.4
Q ss_pred ceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 437 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 437 ~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
..+.||++|++....++.+. -.++...|-=+++ -|.+ +..+||++|+|..+.
T Consensus 21 ~~i~aP~~G~vi~L~~V~D~-------------------vFs~k~mGdGvAI---~P~~-~~v~AP~dG~V~~vf 72 (169)
T PRK09439 21 IEIIAPLSGEIVNIEDVPDV-------------------VFAEKIVGDGIAI---KPTG-NKMVAPVDGTIGKIF 72 (169)
T ss_pred eEEEecCCeEEEEhHHCCCh-------------------HhcccCccceEEE---EccC-CEEEecCCeEEEEEc
Confidence 45789999999998877532 2232222212233 3566 789999999997654
No 245
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=81.43 E-value=0.7 Score=38.17 Aligned_cols=61 Identities=7% Similarity=0.145 Sum_probs=44.8
Q ss_pred EEeCCc-eeeeecccCCCCCccCcceeeEE--ecCCCceEEEEEEecccCCcccccCCceeeeeec
Q 008313 75 VSLGEQ-TCRTAISDNTDKPIWNSEKKLLL--ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 75 v~~g~~-~~rT~vik~tLNP~Wne~~~~~~--~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~el 137 (570)
+++.+. .+||.+.....||+++|+|.|.+ ..-.+-.|.|.++. .-.+...||.|.+.+..+
T Consensus 29 ~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 29 LTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTL 92 (103)
T ss_pred EecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccC
Confidence 445453 45899999999999999665533 22244568899988 445778899999999884
No 246
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.29 E-value=3.2 Score=47.63 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=55.9
Q ss_pred eeeEEEEEEEeeec--CCCCCeEEEEEe-C------Cceeeeeccc-CCCCCccCcc-e---eeEEecCCCceEEEEEEe
Q 008313 52 FAGIALLTLISAEM--KFKDKWLACVSL-G------EQTCRTAISD-NTDKPIWNSE-K---KLLLETNGPHVARISVFE 117 (570)
Q Consensus 52 ~~g~l~v~v~~~~l--~~~~dp~~~v~~-g------~~~~rT~vik-~tLNP~Wne~-~---~~~~~~~~~~~l~~~v~D 117 (570)
+.+.+.|+|+++.. ..+.--||.|.+ | .+.|||+++. |.+||+|+|. + ++.++. -..|+|.|||
T Consensus 701 IA~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe--LA~lRiavye 778 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE--LASLRIAVYE 778 (1189)
T ss_pred EEeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc--hhheeeeeec
Confidence 33688999999995 445567888764 3 2677888854 6899999982 2 223332 2468999999
Q ss_pred cccCCcccccCCceeeeeec
Q 008313 118 TNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 118 ~D~~~~~D~iG~~~i~l~el 137 (570)
... .+||.=-+++..+
T Consensus 779 Egg----K~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 779 EGG----KFIGQRILPVDGL 794 (1189)
T ss_pred cCC----ceeeeeccchhcc
Confidence 887 7777766666654
No 247
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=79.89 E-value=1.3 Score=48.30 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=47.7
Q ss_pred CceeeeecccCCCCCccCcceee--EEecCCCceEEEEEEeccc----CCcccccCCceeeeeeccccCC
Q 008313 79 EQTCRTAISDNTDKPIWNSEKKL--LLETNGPHVARISVFETNR----LSKSNLEGYCEVDLLEFLTKDS 142 (570)
Q Consensus 79 ~~~~rT~vik~tLNP~Wne~~~~--~~~~~~~~~l~~~v~D~D~----~~~~D~iG~~~i~l~ells~~~ 142 (570)
..+.||++|.+.+||.|.+.+.+ .+|. .+.++|.++|-++ +..+|++|+++.++.++.+...
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~--vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~ 107 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEK--VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG 107 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeee--eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh
Confidence 46779999999999999994422 3344 3678999988774 5778999999999999865433
No 248
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=79.14 E-value=3.5 Score=41.69 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=45.1
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHH-h----CCcchHHHHH-----------HHHHHhcCCCCCCcCHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKKE-----------ELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~-~----g~~~~~~ei~-----------~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
-+..|...|.|+||+++-.|+.+++.. + .....+++++ ..++..|.|.|.-||.+||...-
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 456788999999999999999888764 2 2333333332 24666899999999999997654
No 249
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=76.69 E-value=4 Score=44.77 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=63.8
Q ss_pred hhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 174 IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 174 t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
+.++....+.-|..+|.|+.|+++..+....|.+.+...+++.+.+..+..|.+-+|.+..+||.+++.....
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 4445556678899999999999999999999999888889999999999999999999999999999876543
No 250
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=75.62 E-value=3.9 Score=36.32 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=32.3
Q ss_pred eeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 439 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 439 ~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
+.||++|++....++.+. -.++...|--+++ -|.+ +...||++|+|..+.
T Consensus 1 i~aPv~G~~~~l~~v~D~-------------------vFs~~~lG~GvaI---~P~~-~~v~AP~~G~v~~i~ 50 (124)
T cd00210 1 LASPITGEIVPLDQVPDE-------------------VFASKMMGDGFAI---KPSD-GKVVAPVDGTIVQIF 50 (124)
T ss_pred CccccceEEEEhhhCcCh-------------------HhcccCccceEEE---EccC-CeEECcCCeEEEEEc
Confidence 468999999998877531 2233323222333 3555 688999999997664
No 251
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=75.40 E-value=9.3 Score=42.29 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 217 KEELFKAADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 217 i~~~F~~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
+..+|..+|.|+||.++.+||..++..-+.
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 567888999999999999999988876554
No 252
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=73.95 E-value=4.1 Score=45.31 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=46.9
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHH
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDEL 237 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf 237 (570)
..++..+|...|.+++|.|+|.+|...|..+.....-+.+.-+|+.+|.+++ ....+|.
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4567788888888888888888888888776655666778888888888888 7777776
No 253
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=70.83 E-value=12 Score=34.46 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=44.3
Q ss_pred cCCCCCceeHHHHHHHHHHh---CCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 189 DYNQDGQLSFKEFSDLISAF---GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 189 D~d~dG~Is~~Ef~~~l~~~---g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
-..+...++-.-|..++... +..++..++.-+|..+-..+...|+|++|..+|..+.+
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 34455679999999999884 45688899999999987667778999999999977643
No 254
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.25 E-value=7.6 Score=33.63 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=22.8
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHH
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDL 204 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~ 204 (570)
...+..+++.-|.|+||+|++-||...
T Consensus 116 e~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 116 ERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHHHHhcccccCCCceeeHHHHHhh
Confidence 456777888889999999999999864
No 255
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.56 E-value=15 Score=40.87 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=63.3
Q ss_pred EEEEEEEeeec-----CCCCCeEEEEEe-C------CceeeeecccCCCCCccCcceeeEEecC---CCceEEEEEEecc
Q 008313 55 IALLTLISAEM-----KFKDKWLACVSL-G------EQTCRTAISDNTDKPIWNSEKKLLLETN---GPHVARISVFETN 119 (570)
Q Consensus 55 ~l~v~v~~~~l-----~~~~dp~~~v~~-g------~~~~rT~vik~tLNP~Wne~~~~~~~~~---~~~~l~~~v~D~D 119 (570)
-+.|.|++|+. .+-=.||+.+.. | ...+.|+...++-.|.+||+|.|.+..+ ..+.+.+.|-|+=
T Consensus 1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence 67888888873 222257777653 3 2667888999999999999888877543 3456889887776
Q ss_pred cCCcccccCCceeeeeeccccCC
Q 008313 120 RLSKSNLEGYCEVDLLEFLTKDS 142 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~ells~~~ 142 (570)
--..+-.+|-+-+.+.++...+.
T Consensus 1206 FAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred eecccceeeeeeeehhhHhhcCc
Confidence 55566678988888888755443
No 256
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=68.77 E-value=6.9 Score=34.56 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=31.6
Q ss_pred eeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 439 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 439 ~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
+.||++|++....++.+. -.++...|--+++. |.+ ....||++|+|..+.
T Consensus 1 i~aP~~G~~i~l~~v~D~-------------------vFs~~~~G~G~aI~---P~~-~~v~AP~~G~v~~v~ 50 (121)
T TIGR00830 1 IVSPISGEIVPLDQVPDE-------------------VFAEKIVGDGFAIL---PTD-GKVVAPVDGKIGKIF 50 (121)
T ss_pred CccccCceEEEhhhCCCh-------------------HhcccCccceEEEE---cCC-CeEEccCCeEEEEEc
Confidence 468999999988777532 22222222222333 555 678899999997544
No 257
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=68.25 E-value=4 Score=44.22 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=44.6
Q ss_pred cchhhccCCCCchhH----HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhC
Q 008313 146 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 209 (570)
Q Consensus 146 ~~~F~l~D~~~~GkI----l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g 209 (570)
.+.|..+| +++|++ +.+.+....... .......+++++...+.|.+|.|+|+||..++..+.
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 67888899 889987 445554443211 112234489999999999999999999999775543
No 258
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=67.14 E-value=8.4 Score=46.06 Aligned_cols=60 Identities=12% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 183 RILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 183 ~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
+.|+.+|.||.|.||..||..+|... ...++.+++-++.....|.+...+++||+.-+++
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 56889999999999999999998653 3567889999999999999999999999876644
No 259
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=65.34 E-value=7 Score=35.11 Aligned_cols=52 Identities=27% Similarity=0.535 Sum_probs=31.6
Q ss_pred ceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 437 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 437 ~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
..+.||++|++....++.+. .|+ ..|||+ |. ++. |.+ ....||++|+|..+.
T Consensus 3 ~~i~aPv~G~vi~l~~v~D~--------vFs-~~~lG~---------Gv-aI~---p~~-~~v~AP~~G~v~~i~ 54 (132)
T PF00358_consen 3 ITIYAPVSGKVIPLEEVPDP--------VFS-QKMLGD---------GV-AII---PSD-GKVYAPVDGTVTMIF 54 (132)
T ss_dssp EEEE-SSSEEEEEGGGSSSH--------HHH-TTSSSE---------EE-EEE---ESS-SEEEESSSEEEEEE-
T ss_pred eEEEeeCCcEEEEhhhCCch--------HHC-CCCCcC---------EE-EEE---cCC-CeEEEEeeEEEEEEc
Confidence 46899999999988877532 111 123332 22 222 444 578999999996643
No 260
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=64.43 E-value=15 Score=34.85 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=32.1
Q ss_pred ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEecccCCcc---cccCCceeeeee
Q 008313 80 QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKS---NLEGYCEVDLLE 136 (570)
Q Consensus 80 ~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~D~~~~~---D~iG~~~i~l~e 136 (570)
..+.|.|.-++-+|.|+|++++.++.+ ..+-|.|++++...-.+. ..+|.+.++|-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 667889999999999999888877655 355699999876653322 356666666655
No 261
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.29 E-value=6.8 Score=40.89 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=67.1
Q ss_pred eEEEEEEEeeec-------CCCCCeEEEEEe-CC----ceeeeecccCCCCCccCcceeeEEecC-CCceEEEEEE-ecc
Q 008313 54 GIALLTLISAEM-------KFKDKWLACVSL-GE----QTCRTAISDNTDKPIWNSEKKLLLETN-GPHVARISVF-ETN 119 (570)
Q Consensus 54 g~l~v~v~~~~l-------~~~~dp~~~v~~-g~----~~~rT~vik~tLNP~Wne~~~~~~~~~-~~~~l~~~v~-D~D 119 (570)
|.++|.|+.|+- +-...|||.|.+ +. ...+|+.-.+|+.|-+.+ .+.+... ....|...+| |.-
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq--~l~f~~sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQ--QLSFDQSPPGKYLQGTVWGDYG 346 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhh--hhhhccCCCccEEEEEEecccc
Confidence 789999999983 226688988764 22 344899999999998888 6666543 2334888886 566
Q ss_pred cCCcccccCCceeeeeec-cccCCccccchhhccCC
Q 008313 120 RLSKSNLEGYCEVDLLEF-LTKDSDADSEVFDLLDP 154 (570)
Q Consensus 120 ~~~~~D~iG~~~i~l~el-ls~~~~~~~~~F~l~D~ 154 (570)
+....-+||...+-+.|+ ++.... ..||+++-.
T Consensus 347 Rmd~k~fmg~aqi~l~eL~ls~~~~--igwyKlfgs 380 (405)
T KOG2060|consen 347 RMDHKSFMGVAQIMLDELNLSSSPV--IGWYKLFGS 380 (405)
T ss_pred ccchHHHhhHHHHHhhhhccccccc--eeeeeccCC
Confidence 666777899998888886 222111 457777644
No 262
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=63.19 E-value=39 Score=35.45 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=70.9
Q ss_pred EEEEEEeeec-CC--CCCeEEEEEeCCceeeeecccCCCCCccCcceeeEEecC---------CCceEEEEEEecc-cCC
Q 008313 56 ALLTLISAEM-KF--KDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKLLLETN---------GPHVARISVFETN-RLS 122 (570)
Q Consensus 56 l~v~v~~~~l-~~--~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~~~~~~---------~~~~l~~~v~D~D-~~~ 122 (570)
|-|+|.+++. .. +-+-++.-++.+..+-|.-+.++-.|.||. .+.-|.| ...+++++||--| .-+
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~t--eL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNT--ELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeec--ceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 5678888875 22 223344557889999999999999999999 5544433 2336999999888 557
Q ss_pred cccccCCceeeeeec-cccCC-ccc-cchhhccCCCC
Q 008313 123 KSNLEGYCEVDLLEF-LTKDS-DAD-SEVFDLLDPSS 156 (570)
Q Consensus 123 ~~D~iG~~~i~l~el-ls~~~-~~~-~~~F~l~D~~~ 156 (570)
....+|+.-+++... +.+.. ... .+||.++..++
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~ 116 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS 116 (340)
T ss_pred cceeccEEEEEccccccccccccccCCCeeEcccccc
Confidence 778899999999986 21222 123 78999998643
No 263
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=59.33 E-value=6.9 Score=38.88 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=25.8
Q ss_pred hhhhcccCCCCCccCCCCCCCceeeecCCceeeeeeecc
Q 008313 416 NEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVE 454 (570)
Q Consensus 416 n~FF~R~lk~~~Rpi~~~~~~~~~vspaDg~~~~~~~i~ 454 (570)
-.+|+|.+-|+ | + .|.|+.++++||||++..++++.
T Consensus 64 l~~~~Rp~dp~-~-v-~P~D~~i~~~pakG~~~sv~~ll 99 (239)
T COG0688 64 LKYFFRPIDPE-R-V-SPADGRIVVSPADGRVYSVEELL 99 (239)
T ss_pred HhcccccCCCC-c-c-CCCCCcEEEecCCCeEEEHHHhc
Confidence 35677766676 2 2 33467899999999999777654
No 264
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=57.06 E-value=55 Score=27.33 Aligned_cols=62 Identities=11% Similarity=0.211 Sum_probs=40.4
Q ss_pred HHHHHhccccCCCCCceeHHHHHHHHHHh-------CCc----chHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 180 FARRILSIVDYNQDGQLSFKEFSDLISAF-------GNQ----VAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 180 ~l~~if~~~D~d~dG~Is~~Ef~~~l~~~-------g~~----~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
..+.+|+.+ .|.+|.++..-|..+|..+ |+. ..+..++..|+.. ...-.|+.++|...|...
T Consensus 4 KyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 4 KYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 367888888 7889999999888877652 332 2456788888886 255679999999999764
No 265
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=56.35 E-value=30 Score=32.42 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcc-------hHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQV-------AANKKEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~-------~~~ei~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
.+++|..++..+.+.+++.|+..++....... +.-|...++.. -+|.||.+..|+++.+.
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhhc
Confidence 78999999998889999999999997632221 22344444443 36779999999998876
No 266
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.43 E-value=9.6 Score=41.04 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=42.3
Q ss_pred cchhhccCCCCchhHHHHHhhhcC-CCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 146 SEVFDLLDPSSSNKIVGKISLSCS-VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 146 ~~~F~l~D~~~~GkIl~e~l~~l~-~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
-..|..+.++-.|.|.+..-+.+- .....-++ +.-|++..|.|.||.+++.||+.++.-
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFtKSklpi~E---LshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEE---LSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhhhccCchHH---HHHHHhhcccCccccccHHHHHhhHhh
Confidence 457888888888888443322221 11233344 788999999999999999999998854
No 267
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=52.43 E-value=17 Score=38.48 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=66.0
Q ss_pred eEEEEEEEeeec----CC--CCCeEEEEEe-----CCceeeeecccCCCCCccCcceeeEEecC-----------CCceE
Q 008313 54 GIALLTLISAEM----KF--KDKWLACVSL-----GEQTCRTAISDNTDKPIWNSEKKLLLETN-----------GPHVA 111 (570)
Q Consensus 54 g~l~v~v~~~~l----~~--~~dp~~~v~~-----g~~~~rT~vik~tLNP~Wne~~~~~~~~~-----------~~~~l 111 (570)
.++.+.|+++.. ++ .-|-|+-+.+ ..+..+|.||+.|-.|++++.|.+.+... ...-+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 466666666652 22 2234444432 23677999999999999999555544320 12259
Q ss_pred EEEEEecccCC-cccccCCceeeeeeccccCCccccchhhccCCCC
Q 008313 112 RISVFETNRLS-KSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 156 (570)
Q Consensus 112 ~~~v~D~D~~~-~~D~iG~~~i~l~ells~~~~~~~~~F~l~D~~~ 156 (570)
+|++|-+-.|. ++.++|.+.+.++-+-..-++ .+.+.+.|-.+
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei--~e~~~l~DGRK 490 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEI--CEYLPLKDGRK 490 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccch--hhceecccccc
Confidence 99999888764 556799999999886443333 55677777554
No 268
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=51.86 E-value=61 Score=30.90 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=41.8
Q ss_pred EEEEEEeeecCCCCCeEEEEEeC-----CceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEeccc
Q 008313 56 ALLTLISAEMKFKDKWLACVSLG-----EQTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFETNR 120 (570)
Q Consensus 56 l~v~v~~~~l~~~~dp~~~v~~g-----~~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~D~ 120 (570)
++|++....- -..+|+.++..| ...+.|.|.-++-+|.|.+++++.++.+ ..+-|.|+.+..+.
T Consensus 28 V~V~lrd~D~-~~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 28 VCIEFRDSDE-EDAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred EEEEEEeCCC-CcCccceEEecCCCCCcceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 5555554431 122444444332 2556888999999999999888877655 44569999987663
No 269
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=51.61 E-value=46 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.7
Q ss_pred ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEE
Q 008313 80 QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVF 116 (570)
Q Consensus 80 ~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~ 116 (570)
..++|.|.-++-+|.|+|++++.++.+ ..+-|.|+.+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~Ftfr 91 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFR 91 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEE
Confidence 467899999999999999888887654 3345777654
No 270
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.41 E-value=64 Score=30.33 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=35.8
Q ss_pred ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEecccCCc-----ccccCCceeeeee
Q 008313 80 QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSK-----SNLEGYCEVDLLE 136 (570)
Q Consensus 80 ~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~D~~~~-----~D~iG~~~i~l~e 136 (570)
..++|-+..+ -+|.|++++++.++.+ ..+-|.|++++.+.-.+ .-.+|.+.++|-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3445555554 9999999888887665 35669999988764221 2235555555544
No 271
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=49.06 E-value=87 Score=30.09 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.9
Q ss_pred ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEe
Q 008313 80 QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFE 117 (570)
Q Consensus 80 ~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D 117 (570)
..++|.|.-++-+|.|+|++++.++.+ ..+-|.|+++-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH 92 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKH 92 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEe
Confidence 677899989999999999888887655 34458888744
No 272
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=47.66 E-value=35 Score=39.96 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchH-HH-HHHHHH---HhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 174 IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA-NK-KEELFK---AADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 174 t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~-~e-i~~~F~---~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
++.....++++|+.+|....|..+.++|...+..+|..... ++ +.++|. .-|.+.-|.+++.||...|.+-.+
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 34445678999999999999999999999999998876543 22 333444 446666799999999999877543
No 273
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=46.82 E-value=95 Score=29.43 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=32.3
Q ss_pred ceeeeecccCCCCCccCcceeeEEecC--CCceEEEEEEeccc
Q 008313 80 QTCRTAISDNTDKPIWNSEKKLLLETN--GPHVARISVFETNR 120 (570)
Q Consensus 80 ~~~rT~vik~tLNP~Wne~~~~~~~~~--~~~~l~~~v~D~D~ 120 (570)
..+.|.|.-++-+|.|++++++.++.+ ..+-|.|+.+.-+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 556889999999999999888877655 34568899887554
No 274
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=45.97 E-value=19 Score=37.01 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=40.2
Q ss_pred hhhccCCCCchhH-------HHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHH
Q 008313 148 VFDLLDPSSSNKI-------VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 207 (570)
Q Consensus 148 ~F~l~D~~~~GkI-------l~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~ 207 (570)
-|..+|.|+++.| +..++..-. ++. .=.+.+|+..|.|+|-.||+.|++.-|..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~r----kC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKS--KPR----KCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhc--cHH----HHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4888999988876 455444432 222 22588999999999999999999988754
No 275
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=45.81 E-value=22 Score=28.15 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=34.2
Q ss_pred ceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 195 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 195 ~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
.++|..+..++ ...++.+++..+...|+.=..++|+.+||.+.|+..
T Consensus 8 ~~~F~~L~~~l---~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSAL---SKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45666555555 445666677777777776678899999999998774
No 276
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=44.28 E-value=58 Score=30.18 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=36.2
Q ss_pred eeecccCCCCCccCcceeeEEec-C--CCceEEEEEEecccCCcccccCCceeeeeec
Q 008313 83 RTAISDNTDKPIWNSEKKLLLET-N--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 137 (570)
Q Consensus 83 rT~vik~tLNP~Wne~~~~~~~~-~--~~~~l~~~v~D~D~~~~~D~iG~~~i~l~el 137 (570)
.|..+.-+..+.|||...|.+.. + .+..|.|++||.+.-++.-.+|...+++.+.
T Consensus 50 ~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 50 QTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34444445568899966554321 1 3345999999988755666788888887764
No 277
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=43.99 E-value=35 Score=38.95 Aligned_cols=53 Identities=23% Similarity=0.398 Sum_probs=35.7
Q ss_pred CceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 436 EEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 436 ~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
...+.||++|++....++.+. .|+ +.++|+ |.. .-|.| +..+||++|+|..+.
T Consensus 498 ~~~v~aP~~G~vi~l~~v~D~--------vFs-~~~~G~---------Gva----I~P~~-~~v~AP~~G~v~~v~ 550 (648)
T PRK10255 498 IAELVSPITGDVVALDQVPDE--------AFA-SKAVGD---------GVA----VKPTD-KIVVSPAAGTIVKIF 550 (648)
T ss_pred ceEEEecCCcEEEEcccCcch--------hhh-cccccC---------cEE----EeCCC-CeEEecCCeEEEEEc
Confidence 345899999999998887642 222 233333 322 23666 799999999998665
No 278
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=41.72 E-value=19 Score=28.39 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 212 VAANKKEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 212 ~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
.+.+++.+.|+.+ .++.++||.+||.+.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3567899999999 7788999999999887
No 279
>PLN02952 phosphoinositide phospholipase C
Probab=41.53 E-value=54 Score=37.09 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=41.4
Q ss_pred CCCceeHHHHHHHHHHhCC--cchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 192 QDGQLSFKEFSDLISAFGN--QVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 192 ~dG~Is~~Ef~~~l~~~g~--~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
+.|.++|+||......+.. ..+..++..+|..+-.+ ++.++.++|..+|.+...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 3589999999877666532 23678999999998644 368999999999987543
No 280
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=41.42 E-value=4.8 Score=44.57 Aligned_cols=160 Identities=13% Similarity=0.177 Sum_probs=93.0
Q ss_pred CCCCCeEEEEEeCCceeeeecccCCCCCccCcceee-EEecCCCceEEEEEEecccCCcccccCCceeeeeeccccCCcc
Q 008313 66 KFKDKWLACVSLGEQTCRTAISDNTDKPIWNSEKKL-LLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDA 144 (570)
Q Consensus 66 ~~~~dp~~~v~~g~~~~rT~vik~tLNP~Wne~~~~-~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~ells~~~~~ 144 (570)
..++||+.++.+|...+++.+-+..++|+.++.--+ .++.+.+..+.|..++.+++.-.+.+..+++++.+.+...
T Consensus 408 ~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k--- 484 (975)
T KOG2419|consen 408 NYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEK--- 484 (975)
T ss_pred ccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccc---
Confidence 447899999999999999999999999988872211 2233344557777777777666667777777777755211
Q ss_pred ccchhhccCCCCchhHHHHHhhhcCCCCChhhHHHHHH-HHhccccCCCCCceeHHHHHHHHHHh-------CCcchHHH
Q 008313 145 DSEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFAR-RILSIVDYNQDGQLSFKEFSDLISAF-------GNQVAANK 216 (570)
Q Consensus 145 ~~~~F~l~D~~~~GkIl~e~l~~l~~~~~t~~e~~~l~-~if~~~D~d~dG~Is~~Ef~~~l~~~-------g~~~~~~e 216 (570)
...|..+|.+++.- ..+.... +. .+=-.+-.+..|.++.+|...++... .+.+++.+
T Consensus 485 -~~~~~~lDl~g~~~-----------~~~~~~~---lYs~vS~~~~~~s~~~vtVDe~v~ll~~~i~~V~~~~er~tq~~ 549 (975)
T KOG2419|consen 485 -EELFKALDLNGDPA-----------HAPKQPV---LYSYVSYPFLKKSFGVVTVDELVALLALDIIQVMLYLERLTQQE 549 (975)
T ss_pred -hhheehhhccCCcc-----------cCccccc---hhhhccccccccccCeeEHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23555555544421 0011100 00 01111123445889999988777531 11233334
Q ss_pred HHHHHHHhcCCC--CCCcCHHHHHHHHHh
Q 008313 217 KEELFKAADKNG--DGVVSVDELAALLAL 243 (570)
Q Consensus 217 i~~~F~~~D~d~--dG~Is~dEf~~~l~~ 243 (570)
-..+++++.+.+ ...|+..|+.+-++.
T Consensus 550 q~p~~n~~n~~~~~~Qs~~r~q~~E~~qs 578 (975)
T KOG2419|consen 550 QEPIINHFNKSAWAGQSITRSQLVEGLQS 578 (975)
T ss_pred ccchhhcccCCCCCccccchhhhhhhhhc
Confidence 455666666554 345777776655544
No 281
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=40.67 E-value=1.2e+02 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=20.1
Q ss_pred CCcccccCCCeEEeEEEEecCceec
Q 008313 495 DYHRFHLPVSGIIEQFVDIPGCLYT 519 (570)
Q Consensus 495 dYHr~h~P~~g~v~~~~~i~G~~~~ 519 (570)
-.+...+|++|+|.+...-+|..-.
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~ 62 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQ 62 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEEC
Confidence 3567899999999999988887543
No 282
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=40.35 E-value=1.2e+02 Score=28.13 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=45.8
Q ss_pred eEEEEEEEeeec---CCCCCeEEEEE--eCCcee----eeecccCCCCCccCcceeeEEec-C--CCceEEEEEEecccC
Q 008313 54 GIALLTLISAEM---KFKDKWLACVS--LGEQTC----RTAISDNTDKPIWNSEKKLLLET-N--GPHVARISVFETNRL 121 (570)
Q Consensus 54 g~l~v~v~~~~l---~~~~dp~~~v~--~g~~~~----rT~vik~tLNP~Wne~~~~~~~~-~--~~~~l~~~v~D~D~~ 121 (570)
.-++|++.+++. .-.++-|+.+. -|.+.. .|..+.- -++.|||...|.+.. + ....|.|++||...-
T Consensus 8 ~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~ 86 (158)
T cd08398 8 SNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGR 86 (158)
T ss_pred CCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecc
Confidence 356677777762 33445665553 244332 3443442 579999965553321 1 234589999987642
Q ss_pred C--cc--cccCCceeeeeec
Q 008313 122 S--KS--NLEGYCEVDLLEF 137 (570)
Q Consensus 122 ~--~~--D~iG~~~i~l~el 137 (570)
. +. -.+|.+.+.+.+.
T Consensus 87 ~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 87 KGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cCCCCceEEEEEEEEEEECC
Confidence 1 11 2377777776663
No 283
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=38.40 E-value=52 Score=29.49 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=47.1
Q ss_pred CeEEEEEe----CCceeeeecccCCCCCccCcceeeEEec-----CC----------CceEEEEEEecccCCcc------
Q 008313 70 KWLACVSL----GEQTCRTAISDNTDKPIWNSEKKLLLET-----NG----------PHVARISVFETNRLSKS------ 124 (570)
Q Consensus 70 dp~~~v~~----g~~~~rT~vik~tLNP~Wne~~~~~~~~-----~~----------~~~l~~~v~D~D~~~~~------ 124 (570)
.+|+.+.+ .+...+|+++-++.-|+++-.+.|.|+. .+ ...+.|++|-.+.-+.-
T Consensus 34 N~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~ 113 (143)
T cd08683 34 NSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIE 113 (143)
T ss_pred ceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccC
Confidence 46777763 3577899999999999999966665531 11 22588888865532222
Q ss_pred ---c-ccCCceeeeeeccc
Q 008313 125 ---N-LEGYCEVDLLEFLT 139 (570)
Q Consensus 125 ---D-~iG~~~i~l~ells 139 (570)
| ++|.+.+++.+++.
T Consensus 114 ~~~DilLG~v~IPl~~Ll~ 132 (143)
T cd08683 114 TSGDILLGTVKIPLRDLLT 132 (143)
T ss_pred cCCcEEEEEEEeeHHHHhh
Confidence 2 26888888888764
No 284
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.63 E-value=15 Score=43.30 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=55.9
Q ss_pred HHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhh
Q 008313 178 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 244 (570)
Q Consensus 178 ~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~l 244 (570)
.....++|...|.+.+|.|+..+....+.. ..++...+...+...|.++.|.|+++||.-.|..+
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 344677999999999999999999999866 44788899999999999999999999987766543
No 285
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=34.08 E-value=49 Score=26.59 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHhhhc
Q 008313 216 KKEELFKAADKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 216 ei~~~F~~~D~d~dG~Is~dEf~~~l~~l~e 246 (570)
+|..+|..+-. +.+.||.++|..+|.+...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~ 30 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQG 30 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhc
Confidence 57889999965 7899999999999976543
No 286
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=33.96 E-value=1.2e+02 Score=22.51 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.6
Q ss_pred CcccccCCCeEEeEEEEecCcee
Q 008313 496 YHRFHLPVSGIIEQFVDIPGCLY 518 (570)
Q Consensus 496 YHr~h~P~~g~v~~~~~i~G~~~ 518 (570)
....++|.+|+|.....-+|..-
T Consensus 36 ~~~i~ap~~G~v~~~~~~~G~~V 58 (67)
T cd06850 36 ENEVTAPVAGVVKEILVKEGDQV 58 (67)
T ss_pred EEEEeCCCCEEEEEEEECCCCEE
Confidence 45689999999998887777653
No 287
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=32.81 E-value=72 Score=29.45 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=32.9
Q ss_pred CceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEE
Q 008313 436 EEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQF 510 (570)
Q Consensus 436 ~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~ 510 (570)
...+.||..|++....+|.+. . || +.|+|+ | +++ -|.+ -..+||++|+|...
T Consensus 5 ~~~i~sP~~G~vv~Ls~VpD~-v-------Fs-~k~mGd---------G-iAI---~P~~-g~vvAPvdG~v~~i 56 (156)
T COG2190 5 KEEIYSPLSGEVVPLSDVPDP-V-------FS-EKMVGD---------G-VAI---KPSE-GEVVAPVDGTVVLI 56 (156)
T ss_pred cEEEEccCCceEEEchhCCch-H-------hh-cccccC---------c-EEE---ecCC-CeEEeccCcEEEEE
Confidence 467899999999998877532 1 11 124443 2 222 3555 56789999988644
No 288
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=31.93 E-value=24 Score=33.62 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=39.2
Q ss_pred hccccC-CCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 008313 185 LSIVDY-NQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 241 (570)
Q Consensus 185 f~~~D~-d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l 241 (570)
|-.+|. -.||++|-.|+.-+-..+- .-+.-+...|+-.|.|+||+|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~i--pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPLI--PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCCcc--cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 444554 4589999999876532111 123346788999999999999999998775
No 289
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.97 E-value=1.5e+02 Score=34.27 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 008313 173 PIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 243 (570)
Q Consensus 173 ~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~dG~Is~dEf~~~l~~ 243 (570)
.+.+++..-.+.|..+ +-+.|+|+-..-..++. ...++..-+.+++...|.|+||+++..||--.|+-
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnffl--qS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFL--QSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHH--hcCCChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 4455544455566655 34679999998888874 44577888999999999999999999999777654
No 290
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=27.55 E-value=2.6e+02 Score=24.95 Aligned_cols=61 Identities=8% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEec
Q 008313 435 REEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIP 514 (570)
Q Consensus 435 ~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~ 514 (570)
++..+.+|.+|+|..+. ++..+.+. .|..+..-=+-.-.+-..+|.+|+|.++..-.
T Consensus 60 ~~~~v~Ap~~G~V~~i~-V~~Gd~V~----------------------~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~ 116 (130)
T PRK06549 60 GADAMPSPMPGTILKVL-VAVGDQVT----------------------ENQPLLILEAMKMENEIVASSAGTVTAIHVTP 116 (130)
T ss_pred CCcEEECCCCEEEEEEE-eCCCCEEC----------------------CCCEEEEEeccCccEEEEcCCCeEEEEEEeCC
Confidence 45678899999998875 33332221 12222222333446778999999999998888
Q ss_pred Ccee
Q 008313 515 GCLY 518 (570)
Q Consensus 515 G~~~ 518 (570)
|.-.
T Consensus 117 Gd~V 120 (130)
T PRK06549 117 GQVV 120 (130)
T ss_pred CCEe
Confidence 8643
No 291
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=26.64 E-value=3e+02 Score=23.20 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=39.8
Q ss_pred CCeEEEEEeCC-ceeeeecccCCCCCccCcceeeEEecCCCceEEEEEEecccCCcccccCCceeeeee
Q 008313 69 DKWLACVSLGE-QTCRTAISDNTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLE 136 (570)
Q Consensus 69 ~dp~~~v~~g~-~~~rT~vik~tLNP~Wne~~~~~~~~~~~~~l~~~v~D~D~~~~~D~iG~~~i~l~e 136 (570)
++=.+++++.+ .+-+|.+.. --+.-|++ +|.++.+-.+.+.+.||-+|- ..+-|-..+-|++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ--~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQ--SFTLELERSRELEIAVYWRDW---RSLCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccc--eeEEEeecccEEEEEEEEecc---hhhhhheeeEhhh
Confidence 44456666655 555777765 36789999 666665556889999987774 1333444555555
No 292
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=26.24 E-value=65 Score=36.77 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=33.8
Q ss_pred eeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCC-CeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 438 VAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLN-GTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 438 ~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~-g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
.+.||++|++....++.+. -.++...| |. ++ -|.| ...+||++|+|..+.
T Consensus 480 ~i~aP~~G~v~~L~~v~D~-------------------vFs~~~mG~G~-AI---~P~~-~~v~AP~~G~v~~vf 530 (627)
T PRK09824 480 GICSPMTGEVVPLEQVADT-------------------TFASGLLGKGI-AI---LPSV-GEVRSPVAGRVASLF 530 (627)
T ss_pred hcccccceEEeeHHHCCCc-------------------cccccccCCce-Ee---cCCC-CeEEccCCeEEEEEc
Confidence 5799999999998877632 22222222 32 22 3777 699999999997654
No 293
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=25.35 E-value=1.2e+02 Score=27.48 Aligned_cols=62 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred CceeHHHHHHHHHHhCCcchHHHHHHHHHHhcCCC-------CCCcCHHHHHHHHHh-hhccCcccCCchhHHHHh
Q 008313 194 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKNG-------DGVVSVDELAALLAL-QQEKEPLMNCCPVCGETL 261 (570)
Q Consensus 194 G~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~d~-------dG~Is~dEf~~~l~~-l~e~~~~~~~~~~~~~~l 261 (570)
+.||..||.++=.-.. -+..++..+++.|..+| .+.|+++-|+.+|+. +....|+ ..|...+
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~----~lc~hLF 75 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPE----DLCQHLF 75 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--H----HHHHHHH
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCH----HHHHHHH
No 294
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=24.84 E-value=4.4e+02 Score=24.22 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=37.8
Q ss_pred CCceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEec
Q 008313 435 REEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIP 514 (570)
Q Consensus 435 ~~~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~ 514 (570)
+...+.||..|+|..+. ++..+.+. +| ..+..-=+-.-.....+|.+|+|.++..-+
T Consensus 83 ~~~~v~ap~~G~I~~~~-V~~Gd~V~-~G---------------------q~l~~iEamKme~eI~Ap~~G~V~~i~v~~ 139 (153)
T PRK05641 83 GENVVTAPMPGKILRIL-VREGQQVK-VG---------------------QGLLILEAMKMENEIPAPKDGVVKKILVKE 139 (153)
T ss_pred CCCEEECCCCeEEEEEE-eCCCCEEc-CC---------------------CEEEEEeecccceEEecCCCeEEEEEEcCC
Confidence 45678999999999875 44332221 11 111111222223577899999999998878
Q ss_pred Ccee
Q 008313 515 GCLY 518 (570)
Q Consensus 515 G~~~ 518 (570)
|...
T Consensus 140 Gd~V 143 (153)
T PRK05641 140 GDTV 143 (153)
T ss_pred CCEE
Confidence 8754
No 295
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=24.75 E-value=57 Score=33.87 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred hhhccCCCCchhHHHHHhhhcCCCCChhhHHHHHHHHhccccCCCCCceeHHHHHHHHHHhC
Q 008313 148 VFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 209 (570)
Q Consensus 148 ~F~l~D~~~~GkIl~e~l~~l~~~~~t~~e~~~l~~if~~~D~d~dG~Is~~Ef~~~l~~~g 209 (570)
+|+.+|.+.++.+...-+..+.. .-.+.- ++..|...|...||.||-.|+..-+..-+
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I~l-dknE~C---ikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAIEL-DKNEAC---IKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhccccccccccCHHHhhhhhc-cCchhH---HHHHHhhhcccccCccccchhhhhhccCC
Confidence 58888888888874444444432 222333 78899999999999999999998876544
No 296
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=24.43 E-value=2.3e+02 Score=26.52 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=36.5
Q ss_pred eEEEEEEEeeec-CC-CCCeEEEEE----eCCcee----eeecccCCCCCccCcceeeEEec-CC--CceEEEEEEeccc
Q 008313 54 GIALLTLISAEM-KF-KDKWLACVS----LGEQTC----RTAISDNTDKPIWNSEKKLLLET-NG--PHVARISVFETNR 120 (570)
Q Consensus 54 g~l~v~v~~~~l-~~-~~dp~~~v~----~g~~~~----rT~vik~tLNP~Wne~~~~~~~~-~~--~~~l~~~v~D~D~ 120 (570)
..++|++.++.. .. ..++-+.|+ -|.+.. .|..+.-+-++.|||...|.+.. +. ...|.|.+|+...
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 456777777762 32 222323333 244332 45555545679999955543321 12 3358999998764
No 297
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.10 E-value=2.4e+02 Score=25.03 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHhccccCCC--CCceeHHHHHHHHHHhC-------Cc---ch--------HHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 008313 181 ARRILSIVDYNQ--DGQLSFKEFSDLISAFG-------NQ---VA--------ANKKEELFKAADKNGDGVVSVDELAAL 240 (570)
Q Consensus 181 l~~if~~~D~d~--dG~Is~~Ef~~~l~~~g-------~~---~~--------~~ei~~~F~~~D~d~dG~Is~dEf~~~ 240 (570)
+.++|+....+. |..|+..|+..++..+- +. .+ +--+..++..||.+++|.|+.-+|+..
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 667777666544 46799999998887642 11 11 112466788999999999999999887
Q ss_pred HHh
Q 008313 241 LAL 243 (570)
Q Consensus 241 l~~ 243 (570)
+..
T Consensus 123 L~~ 125 (127)
T PF09068_consen 123 LIT 125 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 298
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=23.88 E-value=87 Score=35.68 Aligned_cols=52 Identities=21% Similarity=0.458 Sum_probs=34.2
Q ss_pred ceeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEE
Q 008313 437 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 511 (570)
Q Consensus 437 ~~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~ 511 (570)
..+.||++|++....++.+. .| - +.++|+ |..+ -|.| +..+||++|+|..+.
T Consensus 463 ~~i~aP~~G~~~~l~~v~D~-vF-s-------~~~~G~---------G~ai----~P~~-~~v~aP~~G~v~~~~ 514 (610)
T TIGR01995 463 ESLYAPVAGEMLPLNEVPDE-VF-S-------SGAMGK---------GIAI----LPTE-GEVVAPVDGTVTAVF 514 (610)
T ss_pred ceeccccceEEeeHhhCCCc-cc-c-------ccCcCC---------ceEe----eCCC-CEEECCCCeEEEEEc
Confidence 35899999999998877632 11 0 113332 3333 3777 789999999997653
No 299
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=23.80 E-value=3.1e+02 Score=25.89 Aligned_cols=66 Identities=12% Similarity=0.228 Sum_probs=36.6
Q ss_pred eEEEEEEEeeec---CCCCCeEEEEEe----CCcee---eeecccCCCCCccCcceeeEEe-cC--CCceEEEEEEecc
Q 008313 54 GIALLTLISAEM---KFKDKWLACVSL----GEQTC---RTAISDNTDKPIWNSEKKLLLE-TN--GPHVARISVFETN 119 (570)
Q Consensus 54 g~l~v~v~~~~l---~~~~dp~~~v~~----g~~~~---rT~vik~tLNP~Wne~~~~~~~-~~--~~~~l~~~v~D~D 119 (570)
.-++|+|.+... ....++.+.|+. |.... +|....-+-+|.|||...|.+. .+ ....|.|.+||..
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 345566666653 223334444442 33322 5666666678999996555331 11 2335999999863
No 300
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=23.06 E-value=2.1e+02 Score=21.91 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=28.9
Q ss_pred HHHHHHhCCcchHHHHHHHHHHh--cCCCCCCcCHHHHHHHHHhhhc
Q 008313 202 SDLISAFGNQVAANKKEELFKAA--DKNGDGVVSVDELAALLALQQE 246 (570)
Q Consensus 202 ~~~l~~~g~~~~~~ei~~~F~~~--D~d~dG~Is~dEf~~~l~~l~e 246 (570)
..+|..++. ++-+.+..+++.+ +. +...+|.+|+.++|.+..+
T Consensus 3 ~gMLtN~gs-l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~lv~ 47 (60)
T PF08672_consen 3 VGMLTNLGS-LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRLVE 47 (60)
T ss_dssp HHHHHHH-S-EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHHHH
T ss_pred hHHhhcCCC-CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHH
Confidence 346666775 8888999999988 33 4456899999999977543
No 301
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=22.24 E-value=33 Score=30.76 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=18.1
Q ss_pred CCeEEEEEeCCCCCcccccCCCeEE
Q 008313 483 NGTMVIFRLAPQDYHRFHLPVSGII 507 (570)
Q Consensus 483 ~g~~~~~~Lsp~dYHr~h~P~~g~v 507 (570)
+|..-+-+=.+++||+||+=..=.+
T Consensus 44 ~gW~gsW~g~Vf~yHHYHs~aHEVl 68 (163)
T COG4297 44 NGWFGSWRGGVFNYHHYHSGAHEVL 68 (163)
T ss_pred cCCcccccccccccccccCCcceEE
Confidence 5555566667889999999765544
No 302
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=21.45 E-value=3.8e+02 Score=20.52 Aligned_cols=58 Identities=9% Similarity=-0.009 Sum_probs=35.7
Q ss_pred eeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcccCCCCCCeEEEEEeCCCCCcccccCCCeEEeEEEEecCce
Q 008313 438 VAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCL 517 (570)
Q Consensus 438 ~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~~~~f~~g~~~~~~Lsp~dYHr~h~P~~g~v~~~~~i~G~~ 517 (570)
.+.+|..|++..+. ++..+.+ ..|..+..-=+-.-.....+|++|+|.+...-.|..
T Consensus 3 ~i~a~~~G~i~~~~-v~~G~~V----------------------~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~ 59 (70)
T PRK08225 3 KVYASMAGNVWKIV-VKVGDTV----------------------EEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF 59 (70)
T ss_pred eEeCCCCEEEEEEE-eCCCCEE----------------------CCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE
Confidence 36789999998864 3322221 222222222223346678899999999998877865
Q ss_pred e
Q 008313 518 Y 518 (570)
Q Consensus 518 ~ 518 (570)
-
T Consensus 60 V 60 (70)
T PRK08225 60 V 60 (70)
T ss_pred E
Confidence 4
No 303
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=21.10 E-value=3.1e+02 Score=25.48 Aligned_cols=86 Identities=10% Similarity=0.154 Sum_probs=48.2
Q ss_pred ceeeEEEEEEEeeec---C---CCCCeEEEEE--eCCcee----eeeccc----CCCCCccCcceeeEEe-cC--CCceE
Q 008313 51 DFAGIALLTLISAEM---K---FKDKWLACVS--LGEQTC----RTAISD----NTDKPIWNSEKKLLLE-TN--GPHVA 111 (570)
Q Consensus 51 ~~~g~l~v~v~~~~l---~---~~~dp~~~v~--~g~~~~----rT~vik----~tLNP~Wne~~~~~~~-~~--~~~~l 111 (570)
++...+.|+|.++.- . ..++.|+.+. -|.+.. .|+.+. ..-.+.|||...|.+. .+ .+..|
T Consensus 5 ~v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL 84 (171)
T cd04012 5 TVTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRL 84 (171)
T ss_pred cccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEE
Confidence 344577788888762 2 2367777664 355433 333211 1235779995544331 11 23359
Q ss_pred EEEEEecccCC---------cccccCCceeeeee
Q 008313 112 RISVFETNRLS---------KSNLEGYCEVDLLE 136 (570)
Q Consensus 112 ~~~v~D~D~~~---------~~D~iG~~~i~l~e 136 (570)
.+.+|+...-+ ....+|-+.+.+-+
T Consensus 85 ~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 85 VLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99999877643 23446666666655
No 304
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=21.09 E-value=1.1e+02 Score=26.51 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=26.0
Q ss_pred eeeecCCceeeeeeeccCCceEEEcCCccchhhhcCCCcc--cCCCCCCeEEEEEeC
Q 008313 438 VAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDIC--SNSFLNGTMVIFRLA 492 (570)
Q Consensus 438 ~~vspaDg~~~~~~~i~~~~~~~iKg~~ysl~~ll~~~~~--~~~f~~g~~~~~~Ls 492 (570)
-+.||.+|+|..+.. +|..++.+ .+.|.+|.++.+.++
T Consensus 61 ei~sP~sG~Vv~vN~-----------------~l~~~P~lln~~py~~gWl~~v~~~ 100 (110)
T TIGR03077 61 EVLSPVSGEVIEVNI-----------------ALEDDTQPINHSPESEGWFVVVQLD 100 (110)
T ss_pred EEeCCCCEEEEEEHH-----------------HhhhChHhhcCCCCCCceEEEEEEC
Confidence 478999999988641 34444544 356778888887754
No 305
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.01 E-value=1.6e+02 Score=30.86 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=6.0
Q ss_pred cCCCCCccCc
Q 008313 88 DNTDKPIWNS 97 (570)
Q Consensus 88 k~tLNP~Wne 97 (570)
++.-+|.|.-
T Consensus 135 ~~~~~pc~~c 144 (343)
T TIGR03573 135 KKVGDPEWPQ 144 (343)
T ss_pred hccCCCchhh
Confidence 3556677665
No 306
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=20.83 E-value=80 Score=18.83 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=6.0
Q ss_pred CCCCCceeHHHHH
Q 008313 190 YNQDGQLSFKEFS 202 (570)
Q Consensus 190 ~d~dG~Is~~Ef~ 202 (570)
.|+||.|+--++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3444544444443
No 307
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=20.33 E-value=1.4e+02 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.289 Sum_probs=35.4
Q ss_pred eeecccCC-CCCccCcceeeEEec-C--CCceEEEEEEecccCCcc----cccCCceeeeeec
Q 008313 83 RTAISDNT-DKPIWNSEKKLLLET-N--GPHVARISVFETNRLSKS----NLEGYCEVDLLEF 137 (570)
Q Consensus 83 rT~vik~t-LNP~Wne~~~~~~~~-~--~~~~l~~~v~D~D~~~~~----D~iG~~~i~l~el 137 (570)
.|..+.-+ .+|.|||...|.+.. + .+..|.|++|+.+..... ..+|.+.+.+-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56656655 899999966555422 2 334599999988875554 4678777777664
No 308
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=20.21 E-value=77 Score=26.98 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.5
Q ss_pred ccccCCCeEEeEEEEe
Q 008313 498 RFHLPVSGIIEQFVDI 513 (570)
Q Consensus 498 r~h~P~~g~v~~~~~i 513 (570)
..|||++|+|..+...
T Consensus 68 ~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 68 PIHASVSGTVTAIEKR 83 (101)
T ss_pred eEEcCCCeEEEEEeee
Confidence 5799999999987753
No 309
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=20.14 E-value=2.9e+02 Score=23.54 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=38.2
Q ss_pred HHHHhccccCCCCCceeHHHHHHHHHHhCCcchHHHHHHHHHHhcC---CCCCCcCHHHHHHHHHhh
Q 008313 181 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADK---NGDGVVSVDELAALLALQ 244 (570)
Q Consensus 181 l~~if~~~D~d~dG~Is~~Ef~~~l~~~g~~~~~~ei~~~F~~~D~---d~dG~Is~dEf~~~l~~l 244 (570)
++.-|..+-. ||.+..++|...+ |-..+.+-..++|..+-. -....||.+|+..+..+.
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4444555544 8999999999875 655667777888877632 125779999999887654
Done!