BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008314
         (570 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53285|VPS62_YEAST Vacuolar protein sorting-associated protein 62 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=VPS62 PE=1
           SV=1
          Length = 467

 Score = 42.0 bits (97), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 93/265 (35%), Gaps = 55/265 (20%)

Query: 344 GNLESAELYVHVKPEQGGTFTDIAMWIFCPFN-GPVTLKVGLLSIAMTKIGEHVSDWEHF 402
           G+++ A   + V  ++G  + D   + F PFN GP  +  G         G HV DWEH 
Sbjct: 181 GHIKKAPAVLFVV-DKGNGWVDAFWFYFYPFNWGPYIMGSG-------PWGNHVGDWEHS 232

Query: 403 TLRVSNFTGELWQVYFSEHSGGRWRDAFELEYIKG-------------NKPIVYSSKHGH 449
            +R   + GE   ++ S H GG       +E IK               KP+++S++  H
Sbjct: 233 LVRF--YKGEPQYLWMSAHGGGSAYKFEAIEKIKRLRRVDGKLTNEVIKKPLIFSARGTH 290

Query: 450 ASFPHAGTYLQGSTKLGTGVRNDTAKSNFFVDSSTKYQIIAAEYLGDGVVTEPC------ 503
           A +   G +          + + T +   +  S   Y    A  +  G    PC      
Sbjct: 291 AHYASVGQHAHDVPFFFMPLSDFTDRGPLWDPSLNYY----AYTVTVGEKMTPCGAEETK 346

Query: 504 ----WLQFMREWGP-----------------TIVYDSKSEIDKILNLLPFFMRFSVENLI 542
               WL F   WG                    +   K  + K +  +    RF   N  
Sbjct: 347 MGLEWLSFKGAWGDKQLRPRDPRQKWCPFQWKYIDGPKGPLFKNMERVSLCQRFKWWNFW 406

Query: 543 DLLPTELYGEEGPTGPKEKDNWVGD 567
              P   Y + G     EK++ VGD
Sbjct: 407 KGCPARRYIKRGEGLDAEKNDLVGD 431


>sp|Q06466|TDA6_YEAST Putative vacuolar protein sorting-associated protein TDA6
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=TDA6 PE=2 SV=1
          Length = 467

 Score = 38.1 bits (87), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 38/181 (20%)

Query: 358 EQGGTFTDIAMWIFCPFN-GPVTLKVGLLSIAMTKIGEHVSDWEHFTLRV-SNFTGELWQ 415
           ++G  + D   + F PFN GP  +  G         G HV DWEH  +R        LW 
Sbjct: 190 DKGNGWVDAFWFFFYPFNHGPFIMGHG-------PWGNHVGDWEHSLVRFYKGIPKYLWM 242

Query: 416 VYFSEHSGGRWRDAFELEYIKGNK--------------PIVYSSKHGHASFPHAGTYLQG 461
              S  +G R+    + + ++  K              P+++S++  HA++  AG +   
Sbjct: 243 SAHSSGTGYRYEAVEKFKKLRKRKQQDSDDGGDTILERPLIFSARGTHANYASAGQHAHD 302

Query: 462 STKLGTGVRNDTAKSNFFVDSSTKYQIIAAEYLGDGVVTEPC----------WLQFMREW 511
                  + + T +   +  S   Y      Y  DG    P           WL F   W
Sbjct: 303 IPFFFMPLSDFTDRGPLWDPSLNFY-----SYTFDGKTVTPSSEREESLGLDWLHFQGGW 357

Query: 512 G 512
           G
Sbjct: 358 G 358


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.138    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,178,255
Number of Sequences: 539616
Number of extensions: 11750681
Number of successful extensions: 21625
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21622
Number of HSP's gapped (non-prelim): 3
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)