Query 008314
Match_columns 570
No_of_seqs 277 out of 368
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06101 DUF946: Plant protein 100.0 3E-170 7E-175 1373.1 51.3 529 21-568 1-535 (535)
2 PF06101 DUF946: Plant protein 99.0 1.6E-09 3.5E-14 119.7 10.6 152 10-186 41-217 (535)
3 PF05630 NPP1: Necrosis induci 95.7 0.026 5.7E-07 56.3 6.8 86 345-442 50-135 (206)
4 PF03351 DOMON: DOMON domain; 16.0 3.2E+02 0.007 23.8 5.3 50 136-187 4-54 (124)
5 PF01705 CX: CX module; Inter 15.3 1.2E+02 0.0026 24.6 2.0 25 397-423 24-49 (61)
6 smart00664 DoH Possible catech 13.7 4.9E+02 0.011 23.7 6.0 50 135-187 2-52 (148)
7 PF15584 Imm44: Immunity prote 9.6 2.7E+02 0.0058 24.9 2.6 16 131-146 65-80 (94)
8 COG3657 Uncharacterized protei 9.5 2.3E+02 0.005 25.5 2.1 31 388-423 36-70 (100)
9 COG5508 Uncharacterized conser 9.1 1.2E+02 0.0025 26.5 0.2 8 395-402 71-78 (84)
10 PF06424 PRP1_N: PRP1 splicing 8.9 1.3E+02 0.0028 28.5 0.4 7 158-164 1-7 (133)
No 1
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62. The function of this family is unknown.
Probab=100.00 E-value=3.3e-170 Score=1373.06 Aligned_cols=529 Identities=59% Similarity=1.080 Sum_probs=506.1
Q ss_pred CCCCccCCCCCCCCCCCCcceeeeeecCCeeEEecccceeeeeccCCCCCCCcEEEeecCCCCCeeEEccccccCCCCCC
Q 008314 21 KPEPFSLPSPIPQWPQGTGFATGKINLGELEVFKITKLESIWNYNVLGGEAKGVTFYKPGEIPDGFYCLGYYCQPNDQPL 100 (570)
Q Consensus 21 ~~~~f~~p~p~p~~p~g~~fa~g~i~lg~L~V~~~t~Fe~VW~~~~sg~~~~~~SfWrP~~~P~Gf~~LGdy~~~n~~Pp 100 (570)
+|++|+||+|||+||||+|||+|+|+||+|+|+++++|+|||++.+++.+++++|||||+++|+||++||||||+|++|+
T Consensus 1 ~~~~f~~p~~~~~~p~g~~fa~g~I~lG~L~V~~~s~F~rVW~~~~g~~~~~~vSfwRP~~vP~Gf~~LGdyaqpn~~P~ 80 (535)
T PF06101_consen 1 IPTPFSLPAPLPSWPQGGGFASGRIDLGELEVAQVSTFERVWWDKGGGGSRKGVSFWRPVGVPPGFVILGDYAQPNNKPP 80 (535)
T ss_pred CCccccCCCCCCCCCCCCCceeeeEecCCEEEEEeccceEEEECCCCCCCCCceEEeccCCCCCCceEEeeEeCCCCCCC
Confidence 58999999999999999999999999999999999999999999977777899999999988999999999999999999
Q ss_pred cceEEEEeccccccccccCcccccccCCCCccCCcCceEEeecCCCCCC----ceEEEeecCCCCeeeecEEEeCCCCCC
Q 008314 101 RGHLLVARDAAASSRTEAGSTDKITLHHPALRKPLNYTLVWSTDPHNGD----CGYFWLPNPPMGYKAMGILVTNTSEEP 176 (570)
Q Consensus 101 ~g~Vlv~rd~~~~~~~~~~~~~~~~~~~~~l~~P~~f~lVW~d~~s~~~----~~s~W~PvpP~GYvAlG~Vvt~~~~kP 176 (570)
+++|||+++.+.. ...++|++|++|+|||++++++.. ++|||+|+||+||+|||||||+++++|
T Consensus 81 ~G~VLva~d~~~~------------~~~p~l~~Pv~f~lVW~~~~~~~~~~~~~~sfW~PvaP~GYvALG~Vvt~~~~~P 148 (535)
T PF06101_consen 81 NGFVLVARDVSGS------------PSNPALAKPVDFTLVWSDSGSGGKQDSEDVSFWLPVAPPGYVALGCVVTTGPEKP 148 (535)
T ss_pred cceEEEEecCCcc------------cCCcccCCCCcceEEEecCCCCcccCCccEEEEecCCCCCceEEEEEEeCCCCCC
Confidence 9999999886532 156899999999999999976432 699999999999999999999999999
Q ss_pred CCceEEEecccccccCcccceeeccCCCCCCCCEEEEccCCCCCCCCCCceeeeeEEeecCCCCCchhhHHHHhccCCCC
Q 008314 177 EVEEVRCVREDLTESCETCDLILSTESDMSKTPFQVYSTRPWIRGMFARGVSVGSFVCGTYLNSEEELDIACLKNLNSSL 256 (570)
Q Consensus 177 ~l~~VrCVR~DLt~~~~~~~~iW~~~~s~~~~~~svW~v~p~~rg~~~~gv~~gTF~~~~~~~~~~~~~~~cLKn~~~~~ 256 (570)
++++|||||+|||++|+..++||++.+ |+||++||++|||+++||++|||||+++..+++.++|+||||+++++
T Consensus 149 ~ld~vrCVR~DLv~~~~~~~~Iw~~~~------f~vw~vrP~~rG~~~~Gv~vGTF~~~~~~~~~~~~~i~cLkn~~~~l 222 (535)
T PF06101_consen 149 SLDSVRCVRSDLVDQCEFSESIWDSSS------FSVWSVRPCDRGMWAKGVSVGTFFCQSGWSSSEPPPIACLKNLDSSL 222 (535)
T ss_pred CCceEEEEchHhcccccccceEEccCC------eEEEecCcccceeecCCCceeeEEeecCCCCCcccChhHhhcCCccc
Confidence 999999999999999999999997533 99999999999999999999999999999766678999999999999
Q ss_pred CCCCChHHHHHHHHHhccEEEeCCCCccCCCCHHHHHhcceeeecCCCCC-CCccCCCCCCCCCCCCCCcceeeeCCCCc
Q 008314 257 NAMPNLDQIHALIKHYGPTVFFHPDEEYLPSSVPWFFKNGALLYQDGKPK-GEPIDSRGSNLPCGGTNDGAFWIDLPEDD 335 (570)
Q Consensus 257 ~~mP~~~qi~~lv~~yAP~v~lh~~E~y~Pssv~~fl~n~~l~~~~g~~~-g~~~~~~~snLp~~~~nd~~ywldlp~~~ 335 (570)
++||+++||++||++|||+|||||+|+||||||+|||+|++|++++++.. ++++..+++|||++++||+.||||+|+++
T Consensus 223 ~~mp~~~qi~~li~~YaP~vylhpeE~YlPssV~~Ff~Ng~l~~~~g~~~~~~~i~~~gsnLp~~~~nd~~~~ldl~~~~ 302 (535)
T PF06101_consen 223 SAMPNLDQIHALIQKYAPLVYLHPEERYLPSSVEWFFENGALLYKKGNESNPKPIDPNGSNLPQGGTNDGDYWLDLPDDD 302 (535)
T ss_pred ccCCchHHHHHHHHhhCceEEecCccccCCccHHHHhhCceEEEcCCCccCCeecccccccCCCCCCCCccccccCcccc
Confidence 99999999999999999999999999999999999999999999998886 68888899999999999999999999998
Q ss_pred ccccccccCCCCCceEEEEEEecCCCcEEEEEEEEeccCCCCccceeeeeecccccccCccccceeeEEEEeCCCCcEeE
Q 008314 336 DARNSLKKGNLESAELYVHVKPEQGGTFTDIAMWIFCPFNGPVTLKVGLLSIAMTKIGEHVSDWEHFTLRVSNFTGELWQ 415 (570)
Q Consensus 336 ~~~~~~~~G~~~~a~~y~~v~~~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~G~p~~ 415 (570)
.+++.+++|++++|++|+|||+++|+++|||+||+|||||+++++|+|+++++++++|+|||||||+||||+|++|+|++
T Consensus 303 ~~~~~vk~G~l~~a~~yv~Vkp~~Ggt~tDi~~w~FypfNg~~~~~vg~~~~~~~~~G~HvGDWEH~tvR~~n~~g~~~~ 382 (535)
T PF06101_consen 303 KNKESVKKGNLESAPAYVHVKPDKGGTFTDIFYWYFYPFNGPARLKVGPINIPLGKFGNHVGDWEHVTVRFSNFDGEPQA 382 (535)
T ss_pred ccccccccCCcCCCcEEEEEEEcCCCcEEEEEEEEEecCCCCcccccceeeecccccccccccceeEEEEEECCCCcEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCceeeCCcceee-cCCeeEEEecCCCccCCCCCcccccCCCccccccccccCCCCccccCCCceEEEEEeec
Q 008314 416 VYFSEHSGGRWRDAFELEYI-KGNKPIVYSSKHGHASFPHAGTYLQGSTKLGTGVRNDTAKSNFFVDSSTKYQIIAAEYL 494 (570)
Q Consensus 416 v~~S~H~~G~~~~~~~le~~-~g~rPvvYsa~gsHa~Y~~~G~~~~~~~~l~~g~~~D~~~~g~~wD~~~~~~~~~~~yl 494 (570)
||||||++|+||++++|||. .++|||||||+|||||||+||+|+|++.+|++||++|+||+|.+||++.+|++++++|+
T Consensus 383 v~~S~H~~G~~~~~~~le~~~~~~rPvvYsa~g~Ha~y~~~G~~~~g~~~l~~gi~~D~~~~~~~~D~~~~y~~v~~~y~ 462 (535)
T PF06101_consen 383 VYFSQHSGGQWYDYSDLEFIQDGNRPVVYSARGSHANYPSPGTHLQGSPKLGIGIRNDTTDSGPLWDSSLNYEVVAAEYL 462 (535)
T ss_pred EEeeecCCCceechhhhccccCCCceEEEecCCcccCCCCCcccccCccccCccceecccCCcceEcCCcceEEEecccc
Confidence 99999999999999999973 69999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCcccCccccccccccCCcccCCChHHHHHHHhcCCchhhhhHHHHhhcCCcccccccCCCCccccCCCCCcc
Q 008314 495 GDGVVTEPCWLQFMREWGPTIVYDSKSEIDKILNLLPFFMRFSVENLIDLLPTELYGEEGPTGPKEKDNWVGDE 568 (570)
Q Consensus 495 ~~~~~~~~~Wl~f~G~WG~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~p~e~~~~~GPtGP~~k~~w~~de 568 (570)
++.+. +|+||+|+|+|||+++|+++.|+++|+++||++||.++++|+++||+|+++||||||||+|+||+|||
T Consensus 463 ~~~~~-ep~WL~y~g~WG~~i~y~~~~e~~~~~~~lp~~~~~~~~~~~~~~p~e~~~eegptgpk~k~~w~gde 535 (535)
T PF06101_consen 463 GSGVV-EPPWLNYMGRWGPKIVYDSRSEIDKVEKFLPGKLRFSFENIFNKLPNELYGEEGPTGPKEKNNWEGDE 535 (535)
T ss_pred CCCCc-CcchhhcccccCCcccCchHHHHHHHHHhChHHHHHHHHHHHHhCcHHhccCCCCCCcccccCCCCCC
Confidence 98665 89999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62. The function of this family is unknown.
Probab=98.99 E-value=1.6e-09 Score=119.73 Aligned_cols=152 Identities=18% Similarity=0.353 Sum_probs=98.5
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCC-C-CCC----------CcceeeeeecC----CeeEEecccceeeeeccCCCCCC--
Q 008314 10 CWDGDTEFDFHKPEPFSLPSPIPQ-W-PQG----------TGFATGKINLG----ELEVFKITKLESIWNYNVLGGEA-- 71 (570)
Q Consensus 10 ~~~~~~~~~~~~~~~f~~p~p~p~-~-p~g----------~~fa~g~i~lg----~L~V~~~t~Fe~VW~~~~sg~~~-- 71 (570)
.|+...........+|++|.++|+ | .+| .|+.--.-+.. .-.+++..+|++||.+.+++.+.
T Consensus 41 VW~~~~g~~~~~~vSfwRP~~vP~Gf~~LGdyaqpn~~P~~G~VLva~d~~~~~~~p~l~~Pv~f~lVW~~~~~~~~~~~ 120 (535)
T PF06101_consen 41 VWWDKGGGGSRKGVSFWRPVGVPPGFVILGDYAQPNNKPPNGFVLVARDVSGSPSNPALAKPVDFTLVWSDSGSGGKQDS 120 (535)
T ss_pred EEECCCCCCCCCceEEeccCCCCCCceEEeeEeCCCCCCCcceEEEEecCCcccCCcccCCCCcceEEEecCCCCcccCC
Confidence 444432234566778999998775 2 222 12211111111 12367789999999998766543
Q ss_pred CcEEEeecCCCCCeeEEccccccCCCC-CCcceEEEEeccccccccccCcccccccCCCCccCCcCceEEeecCCCCCCc
Q 008314 72 KGVTFYKPGEIPDGFYCLGYYCQPNDQ-PLRGHLLVARDAAASSRTEAGSTDKITLHHPALRKPLNYTLVWSTDPHNGDC 150 (570)
Q Consensus 72 ~~~SfWrP~~~P~Gf~~LGdy~~~n~~-Pp~g~Vlv~rd~~~~~~~~~~~~~~~~~~~~~l~~P~~f~lVW~d~~s~~~~ 150 (570)
..++||+|+ +|+||++||++++.+.+ |+...|.|+|.+ ++..-.-.+.||.+.+
T Consensus 121 ~~~sfW~Pv-aP~GYvALG~Vvt~~~~~P~ld~vrCVR~D-------------------Lv~~~~~~~~Iw~~~~----- 175 (535)
T PF06101_consen 121 EDVSFWLPV-APPGYVALGCVVTTGPEKPSLDSVRCVRSD-------------------LVDQCEFSESIWDSSS----- 175 (535)
T ss_pred ccEEEEecC-CCCCceEEEEEEeCCCCCCCCceEEEEchH-------------------hcccccccceEEccCC-----
Confidence 369999999 99999999999987655 667889999852 2222234688998652
Q ss_pred eEEEeecCCC-Cee----eec-EEEeCCCCCCCCceEEEecc
Q 008314 151 GYFWLPNPPM-GYK----AMG-ILVTNTSEEPEVEEVRCVRE 186 (570)
Q Consensus 151 ~s~W~PvpP~-GYv----AlG-~Vvt~~~~kP~l~~VrCVR~ 186 (570)
+++|.-.|-. |.- ++| +++.++...+..-.+.|++.
T Consensus 176 f~vw~vrP~~rG~~~~Gv~vGTF~~~~~~~~~~~~~i~cLkn 217 (535)
T PF06101_consen 176 FSVWSVRPCDRGMWAKGVSVGTFFCQSGWSSSEPPPIACLKN 217 (535)
T ss_pred eEEEecCcccceeecCCCceeeEEeecCCCCCcccChhHhhc
Confidence 8999766664 554 455 55666654555566778776
No 3
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria. Infiltration of NPP1 into leaves of Arabidopsis thaliana plants result in transcript accumulation of pathogenesis-related (PR) genes, production of ROS and ethylene, callose apposition, and HR-like cell death [].; PDB: 3ST1_A 3GNZ_P 3GNU_P.
Probab=95.67 E-value=0.026 Score=56.33 Aligned_cols=86 Identities=23% Similarity=0.391 Sum_probs=54.7
Q ss_pred CCCCceEEEEEEecCCCcEEEEEEEEeccCCCCccceeeeeecccccccCccccceeeEEEEeCCCCcEeEEEeeecCCC
Q 008314 345 NLESAELYVHVKPEQGGTFTDIAMWIFCPFNGPVTLKVGLLSIAMTKIGEHVSDWEHFTLRVSNFTGELWQVYFSEHSGG 424 (570)
Q Consensus 345 ~~~~a~~y~~v~~~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~G~p~~v~~S~H~~G 424 (570)
.|..+-+|....-. .+..-|.|.+|||=+.+.. | ...+-|-=||||+.|=+.|..+++.+|-+|+|.+-
T Consensus 50 ~L~gsqVY~R~~~~--~~~~aimYawYfpKd~~~~---~------~~~~GHRHDWE~vVVWidn~~~~i~~Vs~S~hg~y 118 (206)
T PF05630_consen 50 RLDGSQVYSRSRCY--NGWCAIMYAWYFPKDQPSP---G------SGDGGHRHDWENVVVWIDNNPSTILGVSASAHGGY 118 (206)
T ss_dssp G-----EEEEEEEE--TTEEEEEEEEEEEEEEECT-----------T-EEEEEEEEEEEEEECTTT--EEEEEEEETTEE
T ss_pred cccccceeeEEEEE--CCEEEEEEEEECCCCCccc---c------ccCCCcccceeEEEEEEcCCCCceEEEEeeecCCc
Confidence 44456789887754 3466799988888776532 1 02467888999999999874469999999999753
Q ss_pred ceeeCCcceeecCCeeEE
Q 008314 425 RWRDAFELEYIKGNKPIV 442 (570)
Q Consensus 425 ~~~~~~~le~~~g~rPvv 442 (570)
.....++.. .+|+||.|
T Consensus 119 ~~~~~~~~~-~~Gt~pk~ 135 (206)
T PF05630_consen 119 YKRPPDSIR-FDGTHPKV 135 (206)
T ss_dssp EEES--GGG-EETTEEEE
T ss_pred eEecCcccc-ccCCCeeE
Confidence 333234444 67899954
No 4
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=16.04 E-value=3.2e+02 Score=23.84 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=34.0
Q ss_pred CceEEeecCCCCCC-ceEEEeecCCCCeeeecEEEeCCCCCCCCceEEEeccc
Q 008314 136 NYTLVWSTDPHNGD-CGYFWLPNPPMGYKAMGILVTNTSEEPEVEEVRCVRED 187 (570)
Q Consensus 136 ~f~lVW~d~~s~~~-~~s~W~PvpP~GYvAlG~Vvt~~~~kP~l~~VrCVR~D 187 (570)
.|.+=|.....+.. ...+.-|..-.||+|||+ .....+-..+.|.|...+
T Consensus 4 ~~~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGf--s~~~~M~~~Dvv~~~~~~ 54 (124)
T PF03351_consen 4 NFSLSWTVDGDNNTIEFELTGPANTNGWVAIGF--SDDGGMGGSDVVVCWVDD 54 (124)
T ss_pred eEEEEEEEECCCCEEEEEEEeccCCCCEEEEEE--ccccCCCCCcEEEEEEcC
Confidence 46677776533322 455665666689999997 233447788999998886
No 5
>PF01705 CX: CX module; InterPro: IPR002619 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=15.32 E-value=1.2e+02 Score=24.58 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred ccceeeEEEEeCCCC-cEeEEEeeecCC
Q 008314 397 SDWEHFTLRVSNFTG-ELWQVYFSEHSG 423 (570)
Q Consensus 397 GDWEh~tvr~~n~~G-~p~~v~~S~H~~ 423 (570)
-|||--.|+|.| | +|++|+|+=|..
T Consensus 24 ~d~el~~v~F~n--Gt~p~si~fgC~~~ 49 (61)
T PF01705_consen 24 DDWELGNVTFPN--GTRPKSIFFGCPSY 49 (61)
T ss_pred CCccccceEccC--CCcceeEEEeCCCC
Confidence 699999999988 7 899999988765
No 6
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=13.66 E-value=4.9e+02 Score=23.70 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=31.9
Q ss_pred cCceEEeecCCCCCC-ceEEEeecCCCCeeeecEEEeCCCCCCCCceEEEeccc
Q 008314 135 LNYTLVWSTDPHNGD-CGYFWLPNPPMGYKAMGILVTNTSEEPEVEEVRCVRED 187 (570)
Q Consensus 135 ~~f~lVW~d~~s~~~-~~s~W~PvpP~GYvAlG~Vvt~~~~kP~l~~VrCVR~D 187 (570)
.+|.+-|+.... +. ...+.-+.-..||+|+|+ +....+-..+.|-|.+.+
T Consensus 2 ~~~~l~W~~~~~-~~v~~~l~~~~~~~gwvaiGf--s~~~~M~~~d~vv~~~~~ 52 (148)
T smart00664 2 CDYFLSWSVDGE-NSIAFELSGPTSTNGWVAIGF--SPDGQMAGADVVVAWVDN 52 (148)
T ss_pred ceEEEEEEECCC-CeEEEEEEEecCCCCEEEEEE--CCCCCcCCCCEEEEEEcC
Confidence 467888887743 23 455554433389999998 333446666777776543
No 7
>PF15584 Imm44: Immunity protein 44
Probab=9.61 E-value=2.7e+02 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=12.9
Q ss_pred ccCCcCceEEeecCCC
Q 008314 131 LRKPLNYTLVWSTDPH 146 (570)
Q Consensus 131 l~~P~~f~lVW~d~~s 146 (570)
.-.++.|+|||.|+..
T Consensus 65 ~~~~t~WRLiWeD~RY 80 (94)
T PF15584_consen 65 DEVDTRWRLIWEDKRY 80 (94)
T ss_pred CccceEEEEEEecccc
Confidence 3467999999999854
No 8
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=9.51 E-value=2.3e+02 Score=25.47 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=23.7
Q ss_pred ccccccCcc----ccceeeEEEEeCCCCcEeEEEeeecCC
Q 008314 388 AMTKIGEHV----SDWEHFTLRVSNFTGELWQVYFSEHSG 423 (570)
Q Consensus 388 ~~~~~G~Hv----GDWEh~tvr~~n~~G~p~~v~~S~H~~ 423 (570)
.+|.+|+|- |=|| +|+.- |-=..|||+||..
T Consensus 36 ~~GN~GD~kpvgeGV~E---LRId~--GpGyRvY~~~~g~ 70 (100)
T COG3657 36 ALGNFGDVKPVGEGVSE---LRIDH--GPGYRVYFQQRGL 70 (100)
T ss_pred hcCCCcCccccccchhh---heecc--CCceEEEEEecCc
Confidence 467888873 4565 68865 8889999999975
No 9
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=9.09 E-value=1.2e+02 Score=26.47 Aligned_cols=8 Identities=50% Similarity=1.045 Sum_probs=6.2
Q ss_pred ccccceee
Q 008314 395 HVSDWEHF 402 (570)
Q Consensus 395 HvGDWEh~ 402 (570)
-.|||||=
T Consensus 71 RyGDWe~K 78 (84)
T COG5508 71 RYGDWEHK 78 (84)
T ss_pred cccccccc
Confidence 56899984
No 10
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=8.88 E-value=1.3e+02 Score=28.46 Aligned_cols=7 Identities=71% Similarity=1.326 Sum_probs=5.9
Q ss_pred CCCCeee
Q 008314 158 PPMGYKA 164 (570)
Q Consensus 158 pP~GYvA 164 (570)
||+||||
T Consensus 1 pPpgYVa 7 (133)
T PF06424_consen 1 PPPGYVA 7 (133)
T ss_pred CCCCcCC
Confidence 7899986
Done!