Query 008314
Match_columns 570
No_of_seqs 277 out of 368
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3st1_A Necrosis-and ethylene-i 92.6 0.11 3.6E-06 51.0 4.9 84 349-446 68-152 (214)
2 3gnz_P 25 kDa protein elicitor 91.8 0.66 2.3E-05 45.3 9.4 82 350-445 70-153 (213)
3 3nsw_A Excretory-secretory pro 8.9 1.4E+02 0.0048 24.7 1.7 31 27-60 48-79 (106)
4 3qds_A Boletus edulis lectin; 8.9 2.3E+02 0.0079 25.8 3.3 26 403-428 54-79 (143)
5 3h8d_A Myosin-VI; myosin VI, m 8.7 1.8E+02 0.0061 26.2 2.5 31 413-445 35-65 (141)
6 2yb5_A FUSC, putative fusidic 8.3 2.5E+02 0.0087 27.2 3.6 49 208-271 165-213 (215)
7 1jmt_B Splicing factor U2AF 65 7.8 89 0.003 21.0 0.1 10 156-165 9-18 (28)
8 2ofc_A Sclerotium rolfsii lect 6.3 3.6E+02 0.012 24.5 3.3 27 403-429 53-79 (142)
9 2lh0_A Histone chaperone RTT10 5.4 2.5E+02 0.0086 22.6 1.6 22 526-547 8-29 (70)
10 1y2t_A Lectin; ABL, mushroom, 4.7 5.1E+02 0.017 23.5 3.3 27 403-429 52-79 (142)
No 1
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=92.60 E-value=0.11 Score=50.98 Aligned_cols=84 Identities=24% Similarity=0.194 Sum_probs=53.0
Q ss_pred ceEEEEEEecCCCcEEEEEEEEeccCCCCccceeeeeecccccccCccccceeeEEEEeCCCCcEeEEEeeecCCCceee
Q 008314 349 AELYVHVKPEQGGTFTDIAMWIFCPFNGPVTLKVGLLSIAMTKIGEHVSDWEHFTLRVSNFTGELWQVYFSEHSGGRWRD 428 (570)
Q Consensus 349 a~~y~~v~~~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~~G~p~~v~~S~H~~G~~~~ 428 (570)
..+|...+-. .+ .--|.|=+|||=..+. ..+ -|-=||||+-|-+.|.+.++.+|-+|+|++=.-+.
T Consensus 68 sqvY~R~~~~-~g-~~aimYawYFpKD~~~-----------~g~-GHRHDWE~vVVWidn~~~~i~~vs~S~hg~y~~~~ 133 (214)
T 3st1_A 68 AQTYVRSATF-QG-KTALVYAWYMPKDEIS-----------TGI-GHRHDWEGAVVFLNSDTQQIDGVAASAHGKWRKYP 133 (214)
T ss_dssp CCEEEEEEEE-TT-EEEEEEEEEEEEEEEE-----------TTE-EEEEEEEEEEEEEETTTCCEEEEEEEETTEEEEEE
T ss_pred CCcEeEEEEe-CC-EEEEEEEEeccCCccC-----------CCC-CccccceEEEEEEcCCCCeEEEEEeeccCCccccC
Confidence 3578776642 23 4456665665544321 112 47779999999999866788999999996522222
Q ss_pred CCcceeecCCeeEE-EecC
Q 008314 429 AFELEYIKGNKPIV-YSSK 446 (570)
Q Consensus 429 ~~~le~~~g~rPvv-Ysa~ 446 (570)
..+..+.+|+||.| |-..
T Consensus 134 ~~~~~~~~Gt~~kv~Y~~~ 152 (214)
T 3st1_A 134 NPGGANIDDTHVKLQYSAE 152 (214)
T ss_dssp SCCGGGEETTEEEEEEEEE
T ss_pred CCccccccCCeeEEEEEec
Confidence 23333357999854 7543
No 2
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=91.83 E-value=0.66 Score=45.34 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCcEEEEEEEEeccCCCCccceeeeeecccccccCccccceeeEEEEeCC-CCcEeEEEeeecCCCceee
Q 008314 350 ELYVHVKPEQGGTFTDIAMWIFCPFNGPVTLKVGLLSIAMTKIGEHVSDWEHFTLRVSNF-TGELWQVYFSEHSGGRWRD 428 (570)
Q Consensus 350 ~~y~~v~~~~g~~~~di~yw~FY~fN~~~~~~~G~~~~~~~~~G~HvGDWEh~tvr~~n~-~G~p~~v~~S~H~~G~~~~ 428 (570)
.+|...+-. ++.--|.|=+|||=..+.. .+ -|-=||||+-|-+.|. +.++.+|-+|+|++=.-..
T Consensus 70 qvY~R~~~~--~g~~aimYawYFpKD~~~~-----------g~-GHRHDWE~vVVWidnp~~~~i~~vs~S~hg~y~~~~ 135 (213)
T 3gnz_P 70 QVYSRSGTY--NGYYAIMYSWYMPKDSPST-----------GI-GHRHDWENVVVWLDNAASANIVALSASAHSGYKKSF 135 (213)
T ss_dssp CEEEEEEEE--TTEEEEEEEEEEEEECCSS-----------SC-CEEEEEEEEEEEESCTTTCCEEEEEEEETTEEEEES
T ss_pred CceeEEEEc--CCEEEEEEEEeccCCccCC-----------CC-CccccceEEEEEecCCCCceeEEEEeeccCCccccC
Confidence 678776643 2345667767776555321 12 4777999999999883 4588999999997522222
Q ss_pred CCcceeecCCeeEE-Eec
Q 008314 429 AFELEYIKGNKPIV-YSS 445 (570)
Q Consensus 429 ~~~le~~~g~rPvv-Ysa 445 (570)
..+..+.+|+||.| |-.
T Consensus 136 ~~~~~~~~Gt~~kv~Y~~ 153 (213)
T 3gnz_P 136 PADKSYLDGITAKISYKS 153 (213)
T ss_dssp SCCGGGEETTEEEEEEEC
T ss_pred CCccceecCCceEEEEEe
Confidence 22223357999854 744
No 3
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=8.93 E-value=1.4e+02 Score=24.69 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=23.0
Q ss_pred CCCCCC-CCCCCCcceeeeeecCCeeEEeccccee
Q 008314 27 LPSPIP-QWPQGTGFATGKINLGELEVFKITKLES 60 (570)
Q Consensus 27 ~p~p~p-~~p~g~~fa~g~i~lg~L~V~~~t~Fe~ 60 (570)
.|...| +||. |.+=+-+-|.+.+..-+++..
T Consensus 48 vpktapsqwps---fgtlrddcgniqltadtdyvl 79 (106)
T 3nsw_A 48 VPKTAPSQWPS---FGTLRDDCGNIQLTADTDYVL 79 (106)
T ss_dssp CSSCCCSCCCS---EEEEECSSCSCCCCTTEEEEE
T ss_pred CCCCCcccCCc---ccccccccCceEEecccCEEE
Confidence 343344 5998 988888889999988888843
No 4
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=8.89 E-value=2.3e+02 Score=25.78 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=24.6
Q ss_pred EEEEeCCCCcEeEEEeeecCCCceee
Q 008314 403 TLRVSNFTGELWQVYFSEHSGGRWRD 428 (570)
Q Consensus 403 tvr~~n~~G~p~~v~~S~H~~G~~~~ 428 (570)
||||.+.+|+--.|-+.-|.-..|.|
T Consensus 54 ~LRf~~~~Ge~f~v~~GVHNYk~WcD 79 (143)
T 3qds_A 54 VLRFMSDKGELITVAVGVHNYKRWCD 79 (143)
T ss_dssp EEEEEETTCCEEEEEEEEETTEEEEE
T ss_pred EEEEEcCCCCEEEEEEccccCCccee
Confidence 89999999999999999999999888
No 5
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=8.73 E-value=1.8e+02 Score=26.24 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=24.7
Q ss_pred EeEEEeeecCCCceeeCCcceeecCCeeEEEec
Q 008314 413 LWQVYFSEHSGGRWRDAFELEYIKGNKPIVYSS 445 (570)
Q Consensus 413 p~~v~~S~H~~G~~~~~~~le~~~g~rPvvYsa 445 (570)
-.++||. |=+|+|+. .++|+-.++.||+-+|
T Consensus 35 k~G~WYA-HFdGqwIa-RQmElhP~K~PiLLvA 65 (141)
T 3h8d_A 35 KKGWWYA-HFDGPWIA-RQMELHPDKPPILLVA 65 (141)
T ss_dssp CEEEEEE-EEETTEEE-EEEEECSSSCCEEEET
T ss_pred ccceEEE-eeCChhhh-eeeeeCCCCCCeEEec
Confidence 3566764 99999987 7788777889999887
No 6
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=8.31 E-value=2.5e+02 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCEEEEccCCCCCCCCCCceeeeeEEeecCCCCCchhhHHHHhccCCCCCCCCChHHHHHHHHH
Q 008314 208 TPFQVYSTRPWIRGMFARGVSVGSFVCGTYLNSEEELDIACLKNLNSSLNAMPNLDQIHALIKH 271 (570)
Q Consensus 208 ~~~svW~v~p~~rg~~~~gv~~gTF~~~~~~~~~~~~~~~cLKn~~~~~~~mP~~~qi~~lv~~ 271 (570)
..++++..+-..+|..+.+-.+||++|.- ..+|-.|+- +.+.++.++.+
T Consensus 165 ~~VsLf~a~~~g~g~~g~y~tvG~YIC~D--------~~~Cn~~i~-------~~~~L~~Fi~~ 213 (215)
T 2yb5_A 165 SDTSLFLNKTKHNKSSGTYTKKGDYICYD--------SFKCNQNLD-------DINNLYEFIVK 213 (215)
T ss_dssp EEEEEEEECC--------CCCEEEEEESS--------HHHHHHHCC-------CHHHHHHHHHH
T ss_pred CcEEEEEEecCCCCCCCCCCceEEEEeCC--------HHHHHHHhc-------CHHHHHHHHHh
Confidence 36888887665444566678999999982 337988874 23566666654
No 7
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=7.78 E-value=89 Score=20.95 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=6.9
Q ss_pred ecCCCCeeee
Q 008314 156 PNPPMGYKAM 165 (570)
Q Consensus 156 PvpP~GYvAl 165 (570)
=|||+||..|
T Consensus 9 DvpP~GyE~v 18 (28)
T 1jmt_B 9 DVPPPGFEHI 18 (28)
T ss_dssp TCCCTTCTTS
T ss_pred CCCCCCcccc
Confidence 4788888643
No 8
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=6.27 E-value=3.6e+02 Score=24.54 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.9
Q ss_pred EEEEeCCCCcEeEEEeeecCCCceeeC
Q 008314 403 TLRVSNFTGELWQVYFSEHSGGRWRDA 429 (570)
Q Consensus 403 tvr~~n~~G~p~~v~~S~H~~G~~~~~ 429 (570)
||||.+.+|+--.|-+.-|.-..|+|.
T Consensus 53 ~LRf~~~~Ge~F~v~vGVHNyk~WcDi 79 (142)
T 2ofc_A 53 TLRFHADNGESFTATFGVHNYKRWCDI 79 (142)
T ss_dssp EEEEEETTSCEEEEEEEEETTEEEEEE
T ss_pred eEEEecCCCCEEEEEEeeccCcchhhe
Confidence 899999999999999999999998883
No 9
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=5.40 E-value=2.5e+02 Score=22.62 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=17.6
Q ss_pred HHhcCCchhhhhHHHHhhcCCc
Q 008314 526 ILNLLPFFMRFSVENLIDLLPT 547 (570)
Q Consensus 526 ~~~~lp~~~~~~~~~~~~~~p~ 547 (570)
+++.||..|+..+++|+++.|.
T Consensus 8 wL~~LP~~Lq~kV~aIV~~~Ps 29 (70)
T 2lh0_A 8 FLDELPESLSRKIGTVVRVLPS 29 (70)
T ss_dssp GGGGSCHHHHHHHHHHHTTCTT
T ss_pred HHHhCCHHHHHHHHHHHHhCcc
Confidence 4567888888888888888885
No 10
>1y2t_A Lectin; ABL, mushroom, sugar binding PROT; 1.50A {Agaricus bisporus} SCOP: b.97.1.2 PDB: 1y2u_A* 1y2v_A* 1y2w_A* 1y2x_A*
Probab=4.72 E-value=5.1e+02 Score=23.50 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.8
Q ss_pred EEEEeC-CCCcEeEEEeeecCCCceeeC
Q 008314 403 TLRVSN-FTGELWQVYFSEHSGGRWRDA 429 (570)
Q Consensus 403 tvr~~n-~~G~p~~v~~S~H~~G~~~~~ 429 (570)
||||.+ .+|+--.|-+.-|.-..|+|.
T Consensus 52 ~LRf~~~~~Ge~F~v~vGVHNyk~WcDi 79 (142)
T 1y2t_A 52 SLRFVSSDTDESFVATFGVHNYKRWCDI 79 (142)
T ss_dssp EEEEEETTTTEEEEEEEEEETTEEEEEE
T ss_pred eEEEeecCCCcEEEEEEeeccCccceee
Confidence 899999 999999999999999998883
Done!