BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008315
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 49/246 (19%)
Query: 11 ENKIILVSGVTGFVAKVFIEKILRVQPNVKKLYLLIRAADTESAALRFQNEVLAKD--LF 68
E + +L++G TGF+ + + ++LR +L L+RA E A R + + D L
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 69 NVLKEKWGTRLNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAA-ITKFD 127
KE ++++ VAGD S DLGL D L +D++V+SAA + F
Sbjct: 132 RHFKE--------LAADRLEVVAGDKSEPDLGL-DQPXWRRLAETVDLIVDSAAXVNAFP 182
Query: 128 ERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENPLDGASGLDFD 187
Y FG N G L+ A KLK F +VSTA V G +E S D
Sbjct: 183 --YHELFGPNVAGTAELIRIA-LTTKLKPFTYVSTADV-----GAAIE-----PSAFTED 229
Query: 188 AEMKVIDQKLNELKTKGAPQKEITLFMKNLGTERAKIHGWPNTYVFTKTMGEMIMQQSKE 247
A+++VI +P + + GW Y +K GE++++++ +
Sbjct: 230 ADIRVI-----------SPTRTVD-------------GGWAGGYGTSKWAGEVLLREAND 265
Query: 248 NLSLVI 253
+L +
Sbjct: 266 LCALPV 271
>pdb|4D8P|B Chain B, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
pdb|4D8P|D Chain D, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
Length = 250
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 430 FYFNGIFDDTN-TEKLRMTTKGSRTETDLFYFDPDSIEWRDYFMNTHIPGVE------NI 482
+ F G+ TN TE++R+ ++ ++ FD D E+R + +P E +I
Sbjct: 42 YQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTL-LGLPAAEYWNSQKDI 100
Query: 483 LQQKRAFPITKVFRSGHVLSDK-TITERVMPMIFIQSSR 520
L++KRA + +V R + L + T+ RV P + I SR
Sbjct: 101 LERKRA-AVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 138
>pdb|1S9V|B Chain B, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|E Chain E, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 198
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 430 FYFNGIFDDTN-TEKLRMTTKGSRTETDLFYFDPDSIEWRDYFMNTHIPGVE------NI 482
+ F G+ TN TE++R+ ++ ++ FD D E+R + +P E +I
Sbjct: 9 YQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTL-LGLPAAEYWNSQKDI 67
Query: 483 LQQKRAFPITKVFRSGHVLSDK-TITERVMPMIFIQSSR 520
L++KRA + +V R + L + T+ RV P + I SR
Sbjct: 68 LERKRA-AVDRVCRHNYQLELRTTLQRRVEPTVTISPSR 105
>pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4B79|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery.
pdb|4AVY|B Chain B, The Aeropath Project And Pseudomonas Aeruginosa
High-throughput Crystallographic Studies For Assessment
Of Potential Targets In Early Stage Drug Discovery
Length = 242
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 94 ISSEDLGLKDSNLKEELWN---ELDVMVNSAAITKFDERYDVA 133
I E+L + DS + L+ LDV+VN+A I++ E YD+A
Sbjct: 56 IRREELDITDSQRLQRLFEALPRLDVLVNNAGISRDREEYDLA 98
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 115 DVMVNSAA---ITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYV 165
+V++N AA + K +E+YD+A+ IN +G +L A V ++ V +ST YV
Sbjct: 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLA-AAAYSVGAEI-VQISTDYV 116
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 1 MELGSVVEFLENKIILVSGVTGFVAKVFIEKILRVQPNVKKLYLLIR 47
M + + L+N+ IL++G TG K F+ K+L N KK+ + R
Sbjct: 10 MSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSR 55
>pdb|2XGN|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XGN|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XH9|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XH9|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 462 PDSIEWRDYFMNTHIPGVENILQQKRAFPITKVFRSGHVLSDKTITERVMP 512
PD + W D H PGV++ + R P GH + + ER MP
Sbjct: 126 PDMVTWNDVEETLHTPGVQHSVYAVRLTP------DGHEVLHASAPERPMP 170
>pdb|2XFS|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFS|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFT|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XFT|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 462 PDSIEWRDYFMNTHIPGVENILQQKRAFPITKVFRSGHVLSDKTITERVMP 512
PD + W D H PGV++ + R P GH + + ER MP
Sbjct: 126 PDMVTWNDVEETLHTPGVQHSVYAVRLTP------DGHEVLHASAPERPMP 170
>pdb|2XEP|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XEP|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XF3|A Chain A, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
pdb|2XF3|B Chain B, Structural And Mechanistic Studies On A Cephalosporin
Esterase From The Clavulanic Acid Biosynthesis Pathway
Length = 458
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 462 PDSIEWRDYFMNTHIPGVENILQQKRAFPITKVFRSGHVLSDKTITERVMP 512
PD + W D H PGV++ + R P GH + + ER MP
Sbjct: 126 PDMVTWNDVEETLHTPGVQHSVYAVRLTP------DGHEVLHASAPERPMP 170
>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R.
Sphaeroides
pdb|1K2W|B Chain B, Crystal Structure Of Sorbitol Dehydrogenase From R.
Sphaeroides
Length = 256
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 23/73 (31%)
Query: 111 WNELDVMVNSAAITKFD---------ERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVS 161
W +D++VN+AA+ FD E YD F IN G + ++ V+
Sbjct: 77 WGSIDILVNNAAL--FDLAPIVEITRESYDRLFAINVSGTLFMMQ------------AVA 122
Query: 162 TAYVAGERTGLIL 174
A +AG R G I+
Sbjct: 123 RAMIAGGRGGKII 135
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 465 IEWRDYFM---NTHIPGVENILQQKRAFPITKVFRSGHVLSD 503
+ +R+YF+ I + ++L ++AFP KVF GH L +
Sbjct: 353 VRFRNYFIPKGTDIITSLTSVLHDEKAFPNPKVFDPGHFLDE 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,601,992
Number of Sequences: 62578
Number of extensions: 634205
Number of successful extensions: 1539
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1536
Number of HSP's gapped (non-prelim): 14
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)