Query 008317
Match_columns 570
No_of_seqs 224 out of 408
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.6 3E-14 1E-18 149.2 14.6 298 154-495 19-383 (408)
2 3zy2_A Putative GDP-fucose pro 99.1 2.7E-10 9.1E-15 118.6 9.6 275 155-489 6-347 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 97.5 0.0032 1.1E-07 68.8 18.0 250 157-487 145-418 (526)
4 2hhc_A NODZ, nodulation fucosy 97.3 0.0027 9.2E-08 64.1 13.2 40 156-195 3-42 (330)
5 1l2m_A REP protein; A+B fold, 21.3 84 0.0029 28.1 4.1 29 387-416 17-45 (118)
6 3l32_A Phosphoprotein; antipar 21.1 42 0.0014 25.4 1.7 21 300-320 2-22 (45)
7 2ld4_A Anamorsin; methyltransf 18.4 88 0.003 27.3 3.6 94 298-415 70-167 (176)
8 1wgl_A TOLL-interacting protei 18.3 45 0.0015 26.2 1.4 47 421-474 10-58 (59)
9 2eqr_A N-COR1, N-COR, nuclear 18.1 88 0.003 24.1 3.1 21 383-403 8-28 (61)
10 1p3q_Q VPS9P, vacuolar protein 15.4 37 0.0013 26.6 0.3 38 422-464 14-51 (54)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.55 E-value=3e-14 Score=149.18 Aligned_cols=298 Identities=16% Similarity=0.224 Sum_probs=163.5
Q ss_pred CCCCceEEEEec-C-chhHHHHHHHHHHHHHHHhcCe----EEeccccccccccCC------CCCCCCCChHHHHHHhcc
Q 008317 154 PKSNGFLIIEAN-G-GLNQQRLSICDAVAVAGLLNAT----LVIPIFHLNSVWRDS------SNFGDIFDEDFFMHALRS 221 (570)
Q Consensus 154 ~~snGYL~V~~n-G-GLNQqR~~IcDaVavAriLNAT----LVlP~l~~~s~W~D~------S~F~dIFD~dhFI~sL~~ 221 (570)
...++||+-..| | |.|.||...-.|.+.|+.||.| ||||-...---|+-. -.|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 467899998864 5 8999999999999999999999 999976433335533 249999999865 55
Q ss_pred cccccccCchHHHhhhcccc-ccee------------------------------ecccccCCChhhHHhhhhhhhhhcc
Q 008317 222 NVNVVKELPEDILQQFDHNI-SSIV------------------------------NLRVKGWSSPTHYLQKVLPKLQHLG 270 (570)
Q Consensus 222 dVrIVk~LP~~~~~~~~~~~-~~~~------------------------------~~~~~~~s~~~yY~~~vlP~l~k~~ 270 (570)
.|+||.- +++++..+... ..+. .++...+.++.|=...+ ...+..
T Consensus 95 ~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v--~~~~~~ 170 (408)
T 4ap5_A 95 NIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEET--RGLNVS 170 (408)
T ss_dssp TSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTC--EEEEEE
T ss_pred hCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCccccccc--ccCCce
Confidence 6677643 33333211100 0000 00000000111100000 000111
Q ss_pred eEEEccCCccccc---------------------CCC--CccccccceecccccccchhHHHHHHHHHHHHhhcccCCCC
Q 008317 271 AVRIAPFSNRLAQ---------------------GVP--SNIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGG 327 (570)
Q Consensus 271 VI~l~~f~~rLa~---------------------~lp--~diQrLRCrvnf~ALrF~~~I~~lg~~lV~Rmr~~s~~~~g 327 (570)
-+.+.+..+.+.. +.| .+...+ -..|+|.+.|.+.|++.++..-. +
T Consensus 171 c~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L~------~ 239 (408)
T 4ap5_A 171 CLSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHLN------S 239 (408)
T ss_dssp EEEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHHC------C
T ss_pred eEEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHhC------c
Confidence 1122111111110 000 011111 13689999999999998887642 3
Q ss_pred ceEEEeeccccchhhhccccCCCChhHHHHHHHHHHhhhccccccCCcccCCcccccCC-CCCCCHHHHHHHHhhcCCCC
Q 008317 328 KYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDG-KCPLTPLEVGMMLRGMGFDN 406 (570)
Q Consensus 328 ~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~wk~k~~k~~~~i~~~~~R~~G-~CPLTPeEvgl~LralGf~~ 406 (570)
+|+++|+|.+.|+... |....... ...+..-+-+++ +-..... .||-.++-+..+.+.|-=-+
T Consensus 240 ~~~~~h~r~~~dw~~~--~~~~~~~~---------~~~y~~~H~Rr~-----d~~~~~~~~~ps~~~~~~~i~~~~~~~~ 303 (408)
T 4ap5_A 240 TDDADRIPFQEDWMKM--KVKLGSAL---------GGPYLGVHLRRK-----DFIWGHRQDVPSLEGAVRKIRSLMKTHR 303 (408)
T ss_dssp CTTTTTCCCCSSGGGC--CCCTTCBC---------CEEEEEEEECCT-----TTTTTTCSSSCCHHHHHHHHHHHHHHHT
T ss_pred ccceeecccchhHhhh--hccccccc---------CCCccccccccc-----cchhhhhccCCCHHHHHHHHHHHHHhcC
Confidence 5666666666665543 32211100 000111110100 0000111 22322222222322222223
Q ss_pred CcEEEEeeccccCccccchhHHhhCCCccccccCCCHHHHhhhcccchhhhhhhheeeeccceeeecCCCChhhhhhhcc
Q 008317 407 TTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHR 486 (570)
Q Consensus 407 ~T~IYlA~GeiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR 486 (570)
-+.||||+-+ .+..+..|++.+|.++.-.. ..+++..+. ....|.||-+||.+||+||+|..++|+..|.=.|
T Consensus 304 ~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR 376 (408)
T 4ap5_A 304 LDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEER 376 (408)
T ss_dssp CSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHH
Confidence 4569999865 24447889999998764332 346666664 4578999999999999999999999999999999
Q ss_pred ccccCCccc
Q 008317 487 RYLYGGHAK 495 (570)
Q Consensus 487 ~y~~~G~~k 495 (570)
-++ |+.+
T Consensus 377 ~~~--G~~~ 383 (408)
T 4ap5_A 377 EIL--GLDP 383 (408)
T ss_dssp HHH--TBCG
T ss_pred Hhc--CCCC
Confidence 987 7753
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.07 E-value=2.7e-10 Score=118.61 Aligned_cols=275 Identities=19% Similarity=0.259 Sum_probs=156.1
Q ss_pred CCCceEEEE-ecCchhHHHHHHHHHHHHHHHhcCeEEeccccccccccCCCC---CCCCCChHHHHHHhcccccccccCc
Q 008317 155 KSNGFLIIE-ANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRDSSN---FGDIFDEDFFMHALRSNVNVVKELP 230 (570)
Q Consensus 155 ~snGYL~V~-~nGGLNQqR~~IcDaVavAriLNATLVlP~l~~~s~W~D~S~---F~dIFD~dhFI~sL~~dVrIVk~LP 230 (570)
.+||||+-= |-|-..+|-....-+.+.|+.||.|||||-+-.-.. .. +. |++.|+++. |+..-|||.-
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~-~~-~~~vpf~~yF~v~~----l~~yhrvi~m-- 77 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH-PE-TKMIPFEFLFQVGT----VAKYTRVVTM-- 77 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS-SS-CEEECHHHHBCHHH----HTTTSCEECH--
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC-Cc-ccccchhheeecch----hhhhceeeeH--
Confidence 479998775 999999999999999999999999999998753111 11 33 788888765 4444455422
Q ss_pred hHHHhh-------------hcc-------------ccc----ce-------eeccc-cc--CCC----hhh----HHhhh
Q 008317 231 EDILQQ-------------FDH-------------NIS----SI-------VNLRV-KG--WSS----PTH----YLQKV 262 (570)
Q Consensus 231 ~~~~~~-------------~~~-------------~~~----~~-------~~~~~-~~--~s~----~~y----Y~~~v 262 (570)
+++|+. |-. ++. |+ .++.. .+ +.+ ..| |.++=
T Consensus 78 e~Fm~~lap~~WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W 157 (362)
T 3zy2_A 78 QEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKW 157 (362)
T ss_dssp HHHHHHTHHHHSCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CH
T ss_pred HHHHHHhccccCCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHH
Confidence 222110 000 000 00 00000 00 111 000 11100
Q ss_pred hhh--hhhcceEEEccCCcccccCCCC---ccccccceecccccccchhHHHHHHHHHHHHhhcccCCCCceEEEeeccc
Q 008317 263 LPK--LQHLGAVRIAPFSNRLAQGVPS---NIQGLRCLANFEALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFE 337 (570)
Q Consensus 263 lP~--l~k~~VI~l~~f~~rLa~~lp~---diQrLRCrvnf~ALrF~~~I~~lg~~lV~Rmr~~s~~~~g~yiAlHLRfE 337 (570)
... -.+|=|+.|++--. ++.+.. .||| -|+++++|.+.|++.++.-- .+||||+|||--
T Consensus 158 ~~~~p~~~~pVlAf~gaPa--~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L------~rpyVgIHLR~G 221 (362)
T 3zy2_A 158 LEKFPSEEYPVLAFSSAPA--PFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL------AKPFVAVHLRND 221 (362)
T ss_dssp HHHSCTTTCSEEEESSCSS--CSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC------CSSEEEEEECCC
T ss_pred HHhCCcccCceEeecCCCC--CCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc------CCCeEEEEEecC
Confidence 000 02445666553111 111111 3444 58999999999999888743 249999999999
Q ss_pred cchhhhccccCCCCh------hHHHHHHHHHHhhhccccccCCcccCCcccccCCCCCCCHHH----HHHHHhhcCCCCC
Q 008317 338 TDMVAFSCCEYDGGE------EEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLE----VGMMLRGMGFDNT 407 (570)
Q Consensus 338 ~DMlAfsgC~~~~~~------~E~~eL~~~R~~~wk~k~~k~~~~i~~~~~R~~G~CPLTPeE----vgl~LralGf~~~ 407 (570)
.|+.-. |.+--.. +.-.-+ .|... ++ .=-...|==+.++ |..+++.++ -
T Consensus 222 ~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy~~~---~~-------~lt~emClPSle~I~rqIk~~vk~~~---l 280 (362)
T 3zy2_A 222 ADWVRV--CEHIDTTTNRPLFASEQCL------GEGHH---LG-------TLTKEICSPSKQQILEQIVEKVGSIG---A 280 (362)
T ss_dssp HHHHHH--HHTCCTTTCCCCTTTHHHH------CGGGT---TC-------CCCHHHHSCCHHHHHHHHHHHHHHHT---C
T ss_pred CcHHHH--HhhhccccCcccccCCccc------CCccc---Cc-------ccchhccCCCHHHHHHHHHHHHHhcC---C
Confidence 899876 7652110 000011 01000 00 0001123223333 444555554 4
Q ss_pred cEEEEeeccccCccccchhHHhhCCCccccccCCCHHHHhhhcccchhhhhhhheeeeccceeeecCCCChhhhhhhccc
Q 008317 408 TSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRR 487 (570)
Q Consensus 408 T~IYlA~GeiyGg~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~ 487 (570)
..||||+-. +..+.-|+++|+....+ +.+ +. .-.|+||.+||.+||+||+|..++|+..|.=.|-
T Consensus 281 ksVFIATDa----~~~~~ELk~~L~~~~v~--vv~------~~---pe~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERd 345 (362)
T 3zy2_A 281 KSVFVASDK----DHMIDEINEALKPYEIE--AHR------QE---PDDMYTSLAIMGRADLFVGNCVSTFSHIVKRERD 345 (362)
T ss_dssp SEEEEEESS----CCCHHHHHHHHGGGTCC--EEC------CS---SCCHHHHHHHHHHSSEEEECTTCHHHHHHHHHHH
T ss_pred cEEEEecCC----HHHHHHHHHHhhccCce--EEE------eC---CchhHHHHHHHHhCCEeecCccccccHHHHHHHH
Confidence 569999965 44578888888642100 100 00 0179999999999999999999999999999886
Q ss_pred cc
Q 008317 488 YL 489 (570)
Q Consensus 488 y~ 489 (570)
-+
T Consensus 346 i~ 347 (362)
T 3zy2_A 346 HA 347 (362)
T ss_dssp HS
T ss_pred hc
Confidence 54
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=97.48 E-value=0.0032 Score=68.84 Aligned_cols=250 Identities=14% Similarity=0.135 Sum_probs=139.3
Q ss_pred CceEEEEe--cCchhHHHHHHHHHHHHHHHhcCeEEeccccccccccC-CCCCCCCCChHHHHHHhcccccccccCchHH
Q 008317 157 NGFLIIEA--NGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRD-SSNFGDIFDEDFFMHALRSNVNVVKELPEDI 233 (570)
Q Consensus 157 nGYL~V~~--nGGLNQqR~~IcDaVavAriLNATLVlP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~dVrIVk~LP~~~ 233 (570)
..||+... -.|+..+=..++-|..+|..+|-|||+-.-. |.- ...|.++|+. +...+..
T Consensus 145 aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~----w~Y~~g~w~~yF~P--~s~~C~~------------ 206 (526)
T 2de0_X 145 AKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN----WRYATGGWETVFRP--VSETCTD------------ 206 (526)
T ss_dssp SCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT----CSSCTTCGGGTBCC--SCSSCCC------------
T ss_pred CCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC----CCcCCCCHHHhhhC--cCccccC------------
Confidence 47888876 4799999899999999999999999994422 442 2467777753 1111111
Q ss_pred HhhhcccccceeecccccCCChhhHHhhhhhhhhhcceEEEccCCc--ccc----cCCCCcc----ccccc-------ee
Q 008317 234 LQQFDHNISSIVNLRVKGWSSPTHYLQKVLPKLQHLGAVRIAPFSN--RLA----QGVPSNI----QGLRC-------LA 296 (570)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~s~~~yY~~~vlP~l~k~~VI~l~~f~~--rLa----~~lp~di----QrLRC-------rv 296 (570)
.+......|..... -..+.||.+.-.++ +.. ..+|.++ +++.- ..
T Consensus 207 ----------~~~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q 268 (526)
T 2de0_X 207 ----------RSGISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQ 268 (526)
T ss_dssp ----------CCCSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHH
T ss_pred ----------CCccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHH
Confidence 00001122322210 12344444322211 110 1344332 22221 00
Q ss_pred cc-cccccchhHHHHHHHHHHHHhhcccCCCCceEEEeeccccchhhhccccCCCChhHHHHHHHHHHhhhccccccCCc
Q 008317 297 NF-EALRFSEPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGR 375 (570)
Q Consensus 297 nf-~ALrF~~~I~~lg~~lV~Rmr~~s~~~~g~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~wk~k~~k~~~ 375 (570)
.+ ..+|+.++|++.-+++...+. -+++.|+||.|- -|-++.. ....+-+ +-+..+ ..|-
T Consensus 269 ~~~yl~rP~~~i~~~I~~~~~~l~-----~~~piVGVHIRr-GDk~~~E---~~~~~~~-~Y~~~v--~~~~-------- 328 (526)
T 2de0_X 269 FVKYLIRPQPWLEKEIEEATKKLG-----FKHPVIGVHVRR-TDKVGTE---AAFHPIE-EYMVHV--EEHF-------- 328 (526)
T ss_dssp HHHHHTCBCHHHHHHHHHHHHHHT-----CCSSEEEEEECC-C-----C---CCSCSHH-HHHHHH--HHHH--------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC-----CCCCEEEEEEeC-CCCCccc---cccCCHH-HHHHHH--HHHH--------
Confidence 11 247899999998888887764 257999999995 3443211 1111111 111111 1111
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHhhcCCCCCcEEEEeeccccCccccchhHHhhCCCc--cccccCCC-HHHHhhhccc
Q 008317 376 VIRPGANRVDGKCPLTPLEVGMMLRGMGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRL--ETKDTLAT-PEELAAFKGH 452 (570)
Q Consensus 376 ~i~~~~~R~~G~CPLTPeEvgl~LralGf~~~T~IYlA~GeiyGg~~~l~pL~~~FPnl--~tKe~L~s-~eEL~pf~~~ 452 (570)
..|+.......+.||||+-+ ...++-+++.||+. ++-..... ...-..+...
T Consensus 329 ---------------------~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~ 383 (526)
T 2de0_X 329 ---------------------QLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTEN 383 (526)
T ss_dssp ---------------------HHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCT
T ss_pred ---------------------HHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHH
Confidence 11233346778899999988 56688888889985 33222211 1111112111
Q ss_pred chhhhhhhheeeeccceeeecCCCChhhhhhhccc
Q 008317 453 SSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRR 487 (570)
Q Consensus 453 ss~~AALDYiVcl~SDVFv~t~~GNfa~~V~GhR~ 487 (570)
+-..+.+|..+..++|+||+|.++||++++...+-
T Consensus 384 ~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~ 418 (526)
T 2de0_X 384 SLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQ 418 (526)
T ss_dssp HHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhc
Confidence 22568899999999999999999999998877664
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.26 E-value=0.0027 Score=64.08 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCceEEEEecCchhHHHHHHHHHHHHHHHhcCeEEecccc
Q 008317 156 SNGFLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFH 195 (570)
Q Consensus 156 snGYL~V~~nGGLNQqR~~IcDaVavAriLNATLVlP~l~ 195 (570)
+..||++...|||.+|=-+++.|.++|...|.+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 4679999999999999999999999999999998886443
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=21.34 E-value=84 Score=28.05 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 008317 387 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGK 416 (570)
Q Consensus 387 ~CPLTPeEvgl~LralGf~~~T~IYlA~Ge 416 (570)
.||||+||+...|+.|--+.+ ..|+...+
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~r 45 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeehh
Confidence 699999999999999885543 55655544
No 6
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=21.06 E-value=42 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.8
Q ss_pred ccccchhHHHHHHHHHHHHhh
Q 008317 300 ALRFSEPIRMLAEKMVDRMVK 320 (570)
Q Consensus 300 ALrF~~~I~~lg~~lV~Rmr~ 320 (570)
++-|+.-+.++|.++|.||+.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 355778899999999999994
No 7
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=18.37 E-value=88 Score=27.26 Aligned_cols=94 Identities=10% Similarity=-0.058 Sum_probs=51.2
Q ss_pred ccccccc-hhHHHHHHHHHHHHhhcccCCCCceEEEeeccccchhhhccccCCCChhHHHHHHHHHHhhhccccccCCcc
Q 008317 298 FEALRFS-EPIRMLAEKMVDRMVKNSSQSGGKYVSVHLRFETDMVAFSCCEYDGGEEEKREMDIARERSWRGKFRKRGRV 376 (570)
Q Consensus 298 f~ALrF~-~~I~~lg~~lV~Rmr~~s~~~~g~yiAlHLRfE~DMlAfsgC~~~~~~~E~~eL~~~R~~~wk~k~~k~~~~ 376 (570)
..+|.+. ++..++-..+.+-|+ .+|.++-.|.-++.+. ...+....+|-.+ ..++-.|
T Consensus 70 ~~~l~~~~~~~~~~l~~~~r~Lk-----pgG~l~~~~~~~~~~~----~~~~~~~~~~~~~--~l~~aGf---------- 128 (176)
T 2ld4_A 70 GLVPGSTTLHSAEILAEIARILR-----PGGCLFLKEPVETAVD----NNSKVKTASKLCS--ALTLSGL---------- 128 (176)
T ss_dssp CCSTTCCCCCCHHHHHHHHHHEE-----EEEEEEEEEEEESSSC----SSSSSCCHHHHHH--HHHHTTC----------
T ss_pred CChhhhcccCHHHHHHHHHHHCC-----CCEEEEEEcccccccc----cccccCCHHHHHH--HHHHCCC----------
Confidence 3455554 666777777777776 5788887776543211 0112222222111 1222222
Q ss_pred cCCcccccCCCCCCCHHHHHHHHhhcCCCCC---cEEEEeec
Q 008317 377 IRPGANRVDGKCPLTPLEVGMMLRGMGFDNT---TSVYVAAG 415 (570)
Q Consensus 377 i~~~~~R~~G~CPLTPeEvgl~LralGf~~~---T~IYlA~G 415 (570)
+. .+....-|++|+++..+....|+..+ ..+++|.-
T Consensus 129 i~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~K 167 (176)
T 2ld4_A 129 VE---VKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKK 167 (176)
T ss_dssp EE---EEEEEEECCCHHHHHHHHHHTCCCCSSEEEEEEEEEC
T ss_pred cE---eecCcccCCCHHHHHHHHHHhcccCCceEEEEEeccC
Confidence 21 12223458999999999999999876 45555543
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=18.32 E-value=45 Score=26.23 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=31.6
Q ss_pred cccchhHHhhCCCccccccCCCHHHHhhhc--ccchhhhhhhheeeeccceeeecC
Q 008317 421 EKYVAPLRQMFPRLETKDTLATPEELAAFK--GHSSRLAALDYTVCLHSEVFVTTQ 474 (570)
Q Consensus 421 ~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~--~~ss~~AALDYiVcl~SDVFv~t~ 474 (570)
+..++-|++|||++- .+-++... +..+..+|||-+..+..+-|=|+.
T Consensus 10 ee~l~~L~emFP~ld-------~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD-------QEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-------HHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-------HHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 556889999999872 23333222 234577999998888877766554
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=18.11 E-value=88 Score=24.11 Aligned_cols=21 Identities=10% Similarity=-0.213 Sum_probs=17.7
Q ss_pred ccCCCCCCCHHHHHHHHhhcC
Q 008317 383 RVDGKCPLTPLEVGMMLRGMG 403 (570)
Q Consensus 383 R~~G~CPLTPeEvgl~LralG 403 (570)
..+...|.|++|..+|++++-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~ 28 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFI 28 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHH
Confidence 336788999999999999874
No 10
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=15.43 E-value=37 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=19.4
Q ss_pred ccchhHHhhCCCccccccCCCHHHHhhhcccchhhhhhhheee
Q 008317 422 KYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVC 464 (570)
Q Consensus 422 ~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVc 464 (570)
..+..|++|||++ ++|.+-. =|. .+.+...+|||....
T Consensus 14 ~~~~~L~~MFP~l-D~evI~~--Vl~--a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDM-DPSLIED--VCI--AAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTS-CHHHHHH--HHH--HSCC--CGGGC----
T ss_pred HHHHHHHHHcccC-CHHHHHH--HHH--HcCCCHHHHHHHHHh
Confidence 3578899999988 3333311 111 244556788886543
Done!