Query 008317
Match_columns 570
No_of_seqs 224 out of 408
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 23:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 43.4 2.2 0.00016 36.6 -0.2 36 188-223 31-71 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 27.6 25 0.0018 29.4 4.1 29 387-416 17-45 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 18.8 6.8 0.00049 27.9 -1.2 26 391-416 1-30 (44)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 14.6 19 0.0014 26.8 0.3 49 421-474 10-58 (59)
5 d2g7ja1 d.198.5.1 (A:1-112) Pu 13.7 34 0.0025 28.0 1.7 18 390-407 3-20 (112)
6 d1vjna_ d.157.1.4 (A:) Hypothe 13.6 64 0.0047 28.0 3.7 54 159-221 130-184 (209)
7 d1y0ya1 b.49.3.1 (A:73-163) Fr 13.4 34 0.0025 26.7 1.6 16 155-170 8-23 (91)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 13.4 33 0.0024 25.8 1.4 23 383-406 14-36 (75)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 13.2 22 0.0016 26.0 0.3 14 421-434 13-26 (54)
10 d2fr5a1 c.97.1.1 (A:11-146) mo 13.0 54 0.0039 27.3 2.9 100 329-441 27-133 (136)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=43.38 E-value=2.2 Score=36.56 Aligned_cols=36 Identities=33% Similarity=0.606 Sum_probs=29.8
Q ss_pred eEEeccccccccccCCC----C-CCCCCChHHHHHHhcccc
Q 008317 188 TLVIPIFHLNSVWRDSS----N-FGDIFDEDFFMHALRSNV 223 (570)
Q Consensus 188 TLVlP~l~~~s~W~D~S----~-F~dIFD~dhFI~sL~~dV 223 (570)
-||+|...-+++|+++- . =+.|||-|.|--..+.-|
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHHH
Confidence 39999999999999952 2 479999999998887653
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=27.65 E-value=25 Score=29.38 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhhcCCCCCcEEEEeecc
Q 008317 387 KCPLTPLEVGMMLRGMGFDNTTSVYVAAGK 416 (570)
Q Consensus 387 ~CPLTPeEvgl~LralGf~~~T~IYlA~Ge 416 (570)
+|||||||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998765544 4666544
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.77 E-value=6.8 Score=27.91 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=18.1
Q ss_pred CHHHHHH--HHhhcCCCCCcE--EEEeecc
Q 008317 391 TPLEVGM--MLRGMGFDNTTS--VYVAAGK 416 (570)
Q Consensus 391 TPeEvgl--~LralGf~~~T~--IYlA~Ge 416 (570)
||+|... =|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 4555433 378999999874 6777665
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.60 E-value=19 Score=26.83 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=31.4
Q ss_pred cccchhHHhhCCCccccccCCCHHHHhhhcccchhhhhhhheeeeccceeeecC
Q 008317 421 EKYVAPLRQMFPRLETKDTLATPEELAAFKGHSSRLAALDYTVCLHSEVFVTTQ 474 (570)
Q Consensus 421 ~~~l~pL~~~FPnl~tKe~L~s~eEL~pf~~~ss~~AALDYiVcl~SDVFv~t~ 474 (570)
+..+.-|+.|||++- ++.|- .=|. .+..+..+|+|=+.-..-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~D-~~vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMD-QEVIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSSC-HHHHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCCC-HHHHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 566999999999983 22221 1111 2345677888887777777776654
No 5
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=13.71 E-value=34 Score=27.97 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhhcCCCCC
Q 008317 390 LTPLEVGMMLRGMGFDNT 407 (570)
Q Consensus 390 LTPeEvgl~LralGf~~~ 407 (570)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999764
No 6
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=13.60 E-value=64 Score=28.01 Aligned_cols=54 Identities=30% Similarity=0.556 Sum_probs=34.8
Q ss_pred eEEEEecCchhHHHHHHHHHHHHHHHhcCeEEeccccccccccC-CCCCCCCCChHHHHHHhcc
Q 008317 159 FLIIEANGGLNQQRLSICDAVAVAGLLNATLVIPIFHLNSVWRD-SSNFGDIFDEDFFMHALRS 221 (570)
Q Consensus 159 YL~V~~nGGLNQqR~~IcDaVavAriLNATLVlP~l~~~s~W~D-~S~F~dIFD~dhFI~sL~~ 221 (570)
.+.+.+.|.. -..--+|+.+|+.|++-.|||- + |+. ...| ++=.+|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~-H----~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM-H----YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE-S----CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe-c----cCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 1346789999999999999995 2 432 2222 44557888887663
No 7
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.41 E-value=34 Score=26.67 Aligned_cols=16 Identities=38% Similarity=0.789 Sum_probs=13.7
Q ss_pred CCCceEEEEecCchhH
Q 008317 155 KSNGFLIIEANGGLNQ 170 (570)
Q Consensus 155 ~snGYL~V~~nGGLNQ 170 (570)
..||||.|...||.+.
T Consensus 8 ~~~G~l~v~~vGG~~~ 23 (91)
T d1y0ya1 8 EKNGFLRVAPIGGVDP 23 (91)
T ss_dssp CTTSCEEEEEESSCCG
T ss_pred CCCCeEEEEecCCCCh
Confidence 4789999999999774
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=13.38 E-value=33 Score=25.85 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=19.1
Q ss_pred ccCCCCCCCHHHHHHHHhhcCCCC
Q 008317 383 RVDGKCPLTPLEVGMMLRGMGFDN 406 (570)
Q Consensus 383 R~~G~CPLTPeEvgl~LralGf~~ 406 (570)
+..|.. ++++|+..+|+.|||.-
T Consensus 14 ~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 14 RLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHhCCC-CCHHHHHHHHHHcCCce
Confidence 445666 99999999999999963
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.23 E-value=22 Score=26.03 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.7
Q ss_pred cccchhHHhhCCCc
Q 008317 421 EKYVAPLRQMFPRL 434 (570)
Q Consensus 421 ~~~l~pL~~~FPnl 434 (570)
+..++.|++|||++
T Consensus 13 ~e~~~~Lk~MFP~~ 26 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDM 26 (54)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHCCCC
Confidence 34688999999987
No 10
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.99 E-value=54 Score=27.33 Aligned_cols=100 Identities=18% Similarity=0.253 Sum_probs=55.6
Q ss_pred eEEEeeccccchhhhccccCCC------ChhHHHHHHHHHHhhhccccccCCcccCCcccccCCCCCCCHHHH-HHHHhh
Q 008317 329 YVSVHLRFETDMVAFSCCEYDG------GEEEKREMDIARERSWRGKFRKRGRVIRPGANRVDGKCPLTPLEV-GMMLRG 401 (570)
Q Consensus 329 yiAlHLRfE~DMlAfsgC~~~~------~~~E~~eL~~~R~~~wk~k~~k~~~~i~~~~~R~~G~CPLTPeEv-gl~Lra 401 (570)
-|+-=++.+ |=-.|+||.-.. --.|+-.+.++-...=+ ++. .-..+...... +++|=-. --+|..
T Consensus 27 ~VGAa~~~~-dG~i~~G~NvEnasy~~~iCAEr~Ai~~a~~~g~~-~~~-~~~~~~~~~~~-----~~~PCG~CRQ~l~E 98 (136)
T d2fr5a1 27 PVGAALLTG-DGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK-DFR-AIAISSDLQEE-----FISPCGACRQVMRE 98 (136)
T ss_dssp CEEEEEEET-TSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEE-EEEEEESCSSS-----CCCCCHHHHHHHHH
T ss_pred cEEEEEEeC-CCCEEEEEeecccccccccchhheeeeeeeccCCc-cEE-EEEeecccCCC-----CCCcchhhhHHHHh
Confidence 366667765 556667775322 23588888766432111 110 00011111111 1233221 234555
Q ss_pred cCCCCCcEEEEeeccccCccccchhHHhhCCCccccccCC
Q 008317 402 MGFDNTTSVYVAAGKIYKAEKYVAPLRQMFPRLETKDTLA 441 (570)
Q Consensus 402 lGf~~~T~IYlA~GeiyGg~~~l~pL~~~FPnl~tKe~L~ 441 (570)
|..++.||+...+ |+.....|+++.|.-+++++|-
T Consensus 99 --~~~~~~i~~~~~~---~~~~~~tl~eLLP~~F~~~~L~ 133 (136)
T d2fr5a1 99 --FGTDWAVYMTKPD---GTFVVRTVQELLPASFGPEDLQ 133 (136)
T ss_dssp --TCSSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGGT
T ss_pred --hCCCceEEEECCC---CCEEEeEHHHhCcCCCChHHhC
Confidence 4578899998776 5666778999999999998874
Done!