BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008318
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2
Length = 578
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 307/606 (50%), Positives = 385/606 (63%), Gaps = 86/606 (14%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
MTED+ + +T+ +S+TRQR+KRKWD+PAE L+ + G++ P + P+
Sbjct: 1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55
Query: 60 VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
+ P+ + P+ +VP V PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56 MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103
Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGA--HLKETAERILAV 177
+LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A LKET ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163
Query: 178 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 234
D AAAM+EEM+KQ G LQT V+ +ST V+LGF+AD S N+AARIRGPND
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQT-----VKMLSTCVYLGFEADPSSNVAARIRGPND 218
Query: 235 QYINHIMNETGATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293
QYINHIMNETGATV+LRGRGSG+ E G E PLHL LS +NPKS+++AKRLAENL+D
Sbjct: 219 QYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMD 278
Query: 294 TISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAP 353
TIS E GASRVSS KVY AVPPPQQL++G G E + N S L +++ +++ P A
Sbjct: 279 TISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYAV 337
Query: 354 S---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPL 410
S V T++Y Q ++QS GI N G QPV+ GGTSYSGY GIYPQATPL
Sbjct: 338 SSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSGYAGIYPQATPL 388
Query: 411 QQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGP 470
QQVA L+QS SP+ S V PT +++T+ + + A +E E+RPP+KRKFQELP K P
Sbjct: 389 QQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNASNEMERRPPRKRKFQELPADCKVP 447
Query: 471 AKHNQGSEIPNRSEL--SANLDVRNV--------------------SNMPPPSKLVQPVD 508
K Q SE+ ++ SAN VR+ M PPS
Sbjct: 448 EKDKQQSELAMTGDVTPSAN-RVRSPPSPRSVMPPPPPKTIAPPPSKTMSPPS------S 500
Query: 509 NGMPHPPPRN--MPP-------PPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLV 559
M PPPR+ M P PPPP+FTL ++L D + S+ K V DTL+
Sbjct: 501 KSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQDNHISVKKPNP-----VPDTLI 555
Query: 560 KLMEYG 565
KLMEYG
Sbjct: 556 KLMEYG 561
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1
Length = 616
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 263/533 (49%), Positives = 326/533 (61%), Gaps = 40/533 (7%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLI----------NFPLASFGIS 50
MTED H + + +A Q+ +RKKRKWDQPAE L+ P+ +FG +
Sbjct: 1 MTEDRAHKVADEPAA----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFG-A 55
Query: 51 LPGVPVAPVVPAPAAAAFFTNPPVASGA--TVPPVVLQ--GPLPPKFNQPKVQDELIIAR 106
LPGV V P V A AA + PV + P VLQ K +Q K+ DE +IAR
Sbjct: 56 LPGV-VLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAR 113
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAH 166
EIVIND++ SVRYKLTKR TQEEIQKCT V+ITRGKY PN PDGEKPLYLHISAG+
Sbjct: 114 EIVINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQ 173
Query: 167 LKETAERILAVDHAAAMVEEMLKQGHAGFPT---LQTVMGNGVQAMSTSVFLGFDADASL 223
LK+TAERI AVD AA+M+EE+LKQG + G V+ S SVFLGFDAD SL
Sbjct: 174 LKDTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSL 233
Query: 224 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEV-HQPLHLFLSSNNPKSLE 282
NI ARIRGPNDQYINHIM ETG TV+LRG+ S N E QPLHL+L+S + K+LE
Sbjct: 234 NITARIRGPNDQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLE 293
Query: 283 EAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLN--AGSAVIL 340
AK LAENLLDT++AE GASR+SS KVY AVPPPQQLL G+ G + ++ G V+
Sbjct: 294 AAKVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSGTKSDVHYIVGPNVLS 353
Query: 341 TSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGY 400
+T + +S + + V + + +QSG S P + + YP P + GG YSGY
Sbjct: 354 GATHSFASTGV------IAPVVAPAVTVQSGAPTYSGVPLPSNMAYPIPPANGGAFYSGY 407
Query: 401 EGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKF 460
IYPQATPLQQ+A L+ +SS T V P S ++ T S +E +KR +RKF
Sbjct: 408 GDIYPQATPLQQLAFTLKHASSSATQAV-PVTSTPTSMATKGNSILDAEMDKR--SRRKF 464
Query: 461 QELPVGSKGPAKHNQGSEIPNRSELSANLD--VRNVSNMPPPSKLVQPVDNGM 511
QELPV SKGPA +Q S+ ++ + LD S+ P K V P NGM
Sbjct: 465 QELPV-SKGPATESQNSQQGSKF-VKTGLDSSGNIGSSSIAPPKKVHPGSNGM 515
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1
Length = 585
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 117/235 (49%), Gaps = 42/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 161 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITSGVVKAATGSSPTFNGATVTVYHQ 212
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P V +G+ + +F+G + A A+ N+ ++ GP Y+ HI ET
Sbjct: 213 PAPVTPVVSAAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQMET 272
Query: 245 GATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 273 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 327
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1
Length = 570
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 50/238 (21%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYR--------LPN 148
K++D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ LP+
Sbjct: 74 KLKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRVSGAAVSTRGRFMTVEEKSKALPS 132
Query: 149 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMG----- 203
++PLYLH+ + R L VD A ++E++ G T T G
Sbjct: 133 -----DRPLYLHV-------QGQTRDL-VDKAVNRIKEIITNGVVKAATNSTYSGATVTV 179
Query: 204 ---------------------NGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIM 241
G+ + VF+G D A N+ R+ GP+ ++ HI
Sbjct: 180 YQQSGPSVPTIPSAPHKPHYPGGMHYVQDKVFVGLDQALQGFNVKERVEGPSCSFLQHIQ 239
Query: 242 NETGATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
ETGA V LRG+GSG E G E +P+++++S P+ L AK L ENLL T+ AE
Sbjct: 240 AETGAKVFLRGKGSGCLEPASGREAFEPMYIYISHPKPEGLASAKTLCENLLQTVHAE 297
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 612
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 39/232 (16%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG-----HAGFPTLQTV------- 201
++PLYLH+ +T E VD A ++E++ G PT
Sbjct: 161 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQ 212
Query: 202 -------------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGAT 247
+G+ + +F+G + A A+ N+ ++ GP Y+ HI ETGA
Sbjct: 213 PAPVAPVAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQLETGAK 272
Query: 248 VLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ +E
Sbjct: 273 VFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHSE 324
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1
Length = 612
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 148/320 (46%), Gaps = 58/320 (18%)
Query: 28 KKRKWDQPAES-LINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVL- 85
++ KWDQPA + L+ P + G + G +P AAA A+ A +L
Sbjct: 14 RRSKWDQPAPAPLLFLPPTAPGGEVAGSGASPGGATTAAAPSGALDAAAAVAAKINAMLM 73
Query: 86 -QGPLPP------KFNQP-------KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQ 131
+G L P K P K +D+L++A E+ IND + R LT+ TQ+EI
Sbjct: 74 AKGKLKPSQNAAEKLQAPGKSLTSNKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEIS 132
Query: 132 KCTGAVVITRGKYRLPNAPPD---GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEML 188
+ +GA V TRG++ G++PLYLH+ +T E VD A ++E++
Sbjct: 133 RLSGAAVSTRGRFMTTEEKAKVGPGDRPLYLHVQG-----QTRE---LVDRAVNRIKEII 184
Query: 189 KQG--------------------HAGFPTLQTV--------MGNGVQAMSTSVFLGFD-A 219
G H P Q +G+ + +F+G + A
Sbjct: 185 TNGVVKAATGTSPTFNGATVTVYHQPAPIAQLSPAINQKPSFQSGMHYVQDKLFVGLEHA 244
Query: 220 DASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNP 278
+ N+ ++ GP Y+ HI ETGA V LRG+GSG E G E +P+++++S P
Sbjct: 245 VPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP 304
Query: 279 KSLEEAKRLAENLLDTISAE 298
+ L AK+L ENLL T+ AE
Sbjct: 305 EGLAAAKKLCENLLQTVHAE 324
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9
PE=2 SV=1
Length = 619
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 42/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 107 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTAEEKAKVGPG 165
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 166 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQ 217
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ET
Sbjct: 218 PAPITQMSPAVGQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIET 277
Query: 245 GATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 278 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 332
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1
Length = 614
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 42/235 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 97 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPG 155
Query: 154 EKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------HA 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 156 DRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQ 207
Query: 194 GFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNET 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ET
Sbjct: 208 PAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIET 267
Query: 245 GATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
GA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 268 GAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 322
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1
Length = 534
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 132/301 (43%), Gaps = 43/301 (14%)
Query: 98 VQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEK 155
++ + + +++ IN+ + RY L + T EI+ +G + ++G+Y PN D +
Sbjct: 160 IEGDGVFMQDVEINNVRN--RYILVRASTLSEIENKSGVQLFSKGRY-YPNKALATDKDP 216
Query: 156 PLYLHISAGAH------LKETAERILA-----VDHAAAMVEEMLKQGHAGFPTLQTVMGN 204
PLYLHI + L+E I +D E ++ ++ P + GN
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIESWINKDMGPLIDERRFRRREDNERNNSNSPRNFSTHGN 276
Query: 205 G--------VQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSG 256
G + + V++ ++ I GP Y+ HI ET V ++G+GS
Sbjct: 277 GNGENGQPRRKWLEEKVYINLTPSRGFHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGSA 336
Query: 257 NSE-GLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRV--------SSC 307
E E +P+HL + S++P +++ AK L E+L+ ++ + A +
Sbjct: 337 FIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQGN 396
Query: 308 KVYNAVPPPQQLLTGIQGFGNE--QKLNAGSAVILTSTVNLSSVPLAPSV------PGVT 359
+ YN PP + + E Q NA A ++T ++ + S+P P + PGVT
Sbjct: 397 RAYN--PPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVT 454
Query: 360 T 360
+
Sbjct: 455 S 455
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 53 GVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELI---IAREIV 109
G V P++P A+ N A LQ + N ++Q + E+
Sbjct: 903 GTSVGPLLPLAIASNTQNNEATAR-------ALQAAFNIQQNLARIQAHAVPEHYEAELE 955
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDG--EKPLYLHISA 163
IND + R+K+T + T IQ+ TGA + TRG + P G E+ LYL I
Sbjct: 956 INDFPQNARWKITHKETLGPIQEWTGAAITTRGTF-FPQGKIVGANERKLYLFIEG 1010
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 218 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGLQGE-----VHQP 268
D+ + N RI GP + + TG V +RG+GS G + L+G+ + P
Sbjct: 143 DSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDP 202
Query: 269 LHLFLSSNNPKSLEEAK-RLAENLLDTI 295
LH+ + + P S+ +A+ R A+ +++ +
Sbjct: 203 LHILIEAEFPASIIDARLRHAQEVIEEL 230
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKY----RLPNAPPDGEKPLYLHIS 162
E+ IND + R+K+T + T I + TGA + TRG++ R+P GE+ LYL I
Sbjct: 1070 ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGP---GERKLYLFIE 1126
Query: 163 -----AGAHLKETAERIL 175
+ H K +R+L
Sbjct: 1127 GPSEKSVKHAKAELKRVL 1144
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 935 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 994
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 995 E--------LAVQKAKAEITRLIKE 1011
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 922 ELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 981
Query: 166 HLKETAERILAVDHAAAMVEEMLKQ 190
LAV A A + ++K+
Sbjct: 982 E--------LAVQKAKAEITRLIKE 998
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 260
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 261 LQGEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292
L GE +PLH +++N +++++A N+L
Sbjct: 196 LPGE-DEPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGK-YRLPNAPPDGEKPLYLHI---- 161
E+ IND + R+K+T + T I + +GA + TRGK Y P E+ LYL +
Sbjct: 893 ELEINDFPQNARWKVTHKETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPT 952
Query: 162 -----SAGAHLKETAERI 174
+A A LK E I
Sbjct: 953 EISVKTAKAELKRVLEDI 970
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 260
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 261 LQGEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292
L GE +PLH +++N +++++A N+L
Sbjct: 196 LPGE-DEPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 25/117 (21%)
Query: 223 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQ-----------PLHL 271
N +I GP I + ETGA + + G+GS + + E+ + LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 272 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 318
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 25/117 (21%)
Query: 223 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQ-----------PLHL 271
N +I GP I + ETGA + + G+GS + + E+ + LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 272 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 318
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 65/156 (41%), Gaps = 8/156 (5%)
Query: 150 PPDGEK-----PLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGN 204
PPD E+ P Y + + +E R D A+V+ LK P
Sbjct: 184 PPDRERSPSPPPTYDNQGRRTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYHAIK 243
Query: 205 GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS---GNSEGL 261
Q + V+L + + GP + + ++GA + +RG+GS G +
Sbjct: 244 RNQRPTEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTGKGKMD 303
Query: 262 QGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISA 297
E + +H +++++ S+++ +L +++T ++
Sbjct: 304 ADEDEEEMHCVVTADDEASVKKCIKLINQVIETAAS 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,915,894
Number of Sequences: 539616
Number of extensions: 10169188
Number of successful extensions: 58130
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 677
Number of HSP's that attempted gapping in prelim test: 48641
Number of HSP's gapped (non-prelim): 7130
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)