Query 008318
Match_columns 570
No_of_seqs 198 out of 459
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 23:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 2.1E-30 7.3E-35 231.2 9.6 110 203-316 6-117 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 1E-26 3.5E-31 212.8 1.5 95 209-303 2-110 (140)
3 1k1g_A SF1-BO isoform; splicin 99.9 3.1E-24 1.1E-28 193.7 5.5 88 207-294 5-99 (131)
4 3krm_A Insulin-like growth fac 99.3 6.4E-12 2.2E-16 113.2 11.6 156 107-300 6-162 (163)
5 2jvz_A KH type-splicing, FAR u 99.3 7.6E-11 2.6E-15 105.7 13.9 158 105-296 3-162 (164)
6 1j4w_A FUSE binding protein; s 99.1 5.9E-10 2E-14 101.8 11.6 155 107-292 6-174 (174)
7 2jzx_A Poly(RC)-binding protei 99.1 4.5E-10 1.5E-14 100.9 10.3 153 104-293 5-158 (160)
8 2anr_A Neuro-oncological ventr 99.0 1.4E-09 4.8E-14 99.5 9.8 159 104-293 6-174 (178)
9 2opv_A KHSRP protein; KH domai 98.8 9.7E-09 3.3E-13 85.1 7.8 72 208-293 13-84 (85)
10 1x4m_A FAR upstream element bi 98.7 2E-08 6.8E-13 84.9 5.4 75 205-293 11-85 (94)
11 1zzk_A Heterogeneous nuclear r 98.6 5.1E-08 1.7E-12 80.3 5.9 73 208-296 6-78 (82)
12 1dtj_A RNA-binding neurooncolo 98.5 6.5E-08 2.2E-12 77.8 4.5 71 210-293 4-74 (76)
13 1x4n_A FAR upstream element bi 98.5 6E-08 2E-12 81.7 4.5 72 208-295 14-85 (92)
14 1j5k_A Heterogeneous nuclear r 98.5 5.8E-08 2E-12 81.2 4.1 75 207-297 12-86 (89)
15 2hh3_A KH-type splicing regula 98.5 1.4E-07 4.9E-12 82.0 6.6 70 210-295 12-81 (106)
16 2e3u_A PH-DIM2P, hypothetical 98.5 8.4E-08 2.9E-12 93.1 5.3 147 106-294 36-191 (219)
17 2hh2_A KH-type splicing regula 98.5 1.1E-07 3.7E-12 82.4 5.2 72 210-294 8-79 (107)
18 2cte_A Vigilin; K homology typ 98.5 1.2E-07 4E-12 80.3 4.5 70 209-296 17-86 (94)
19 1ec6_A RNA-binding protein NOV 98.4 1.5E-07 5.1E-12 78.1 5.0 76 210-298 4-79 (87)
20 1we8_A Tudor and KH domain con 98.4 2.4E-07 8.3E-12 79.6 6.2 73 209-295 15-87 (104)
21 2ctl_A Vigilin; K homology typ 98.4 3.2E-07 1.1E-11 78.4 6.9 77 208-299 16-92 (97)
22 2ctm_A Vigilin; K homology typ 98.4 1.3E-07 4.5E-12 80.6 4.3 77 208-301 16-92 (95)
23 2dgr_A Ring finger and KH doma 98.4 1.4E-07 4.8E-12 79.0 4.2 66 208-292 9-74 (83)
24 2p2r_A Poly(RC)-binding protei 98.4 1.2E-07 4.1E-12 76.8 3.6 69 209-293 5-73 (76)
25 2ctk_A Vigilin; K homology typ 98.4 1.6E-07 5.5E-12 81.3 4.3 75 209-301 17-91 (104)
26 2axy_A Poly(RC)-binding protei 98.4 2E-07 6.9E-12 75.4 3.5 67 209-293 5-71 (73)
27 1wvn_A Poly(RC)-binding protei 98.3 1.7E-07 5.9E-12 77.0 3.0 72 208-295 5-76 (82)
28 1vig_A Vigilin; RNA-binding pr 98.3 5.1E-07 1.7E-11 72.8 4.4 65 210-292 6-70 (71)
29 1tua_A Hypothetical protein AP 98.1 1.9E-06 6.4E-11 82.5 5.1 137 117-294 15-160 (191)
30 2qnd_A FMR1 protein; KH domain 98.1 5.2E-06 1.8E-10 75.1 7.4 137 104-295 4-143 (144)
31 2ctj_A Vigilin; K homology typ 97.9 5.2E-06 1.8E-10 71.0 3.8 69 209-295 17-86 (95)
32 2jvz_A KH type-splicing, FAR u 97.9 9.5E-06 3.3E-10 72.5 5.1 70 211-294 4-73 (164)
33 1j4w_A FUSE binding protein; s 97.8 1.1E-05 3.9E-10 73.4 4.5 70 211-296 5-74 (174)
34 2cpq_A FragIle X mental retard 97.7 6.7E-06 2.3E-10 70.7 1.5 54 225-292 25-79 (91)
35 2jzx_A Poly(RC)-binding protei 97.7 1.7E-05 5.7E-10 71.2 3.6 67 210-294 6-72 (160)
36 3krm_A Insulin-like growth fac 97.7 2.5E-05 8.6E-10 70.2 4.6 69 211-294 5-73 (163)
37 2yqr_A KIAA0907 protein; struc 97.6 0.00013 4.4E-09 65.2 7.7 80 103-190 11-99 (119)
38 2anr_A Neuro-oncological ventr 97.6 3.8E-05 1.3E-09 70.1 4.0 72 209-293 6-77 (178)
39 1k1g_A SF1-BO isoform; splicin 97.6 9.8E-05 3.3E-09 66.7 6.3 79 105-191 8-100 (131)
40 3u1k_A Polyribonucleotide nucl 97.2 0.00015 5.2E-09 79.8 3.9 61 211-292 569-629 (630)
41 4aid_A Polyribonucleotide nucl 96.7 0.0011 3.7E-08 74.3 4.8 55 225-294 580-634 (726)
42 2ctf_A Vigilin; K homology typ 96.7 0.0019 6.6E-08 55.7 5.3 70 209-299 27-97 (102)
43 2bl5_A MGC83862 protein, quaki 96.6 0.0028 9.7E-08 58.2 5.9 66 122-190 25-101 (140)
44 3n89_A Defective in GERM LINE 96.4 0.0053 1.8E-07 64.2 7.4 62 225-292 196-259 (376)
45 3n89_A Defective in GERM LINE 96.1 0.0022 7.5E-08 67.1 3.0 74 207-291 28-103 (376)
46 2e3u_A PH-DIM2P, hypothetical 96.1 0.0034 1.2E-07 61.0 3.9 64 210-293 35-102 (219)
47 2qnd_A FMR1 protein; KH domain 95.6 0.0065 2.2E-07 54.9 3.4 61 209-288 4-64 (144)
48 1zzk_A Heterogeneous nuclear r 94.7 0.11 3.7E-06 42.4 7.7 70 104-191 7-77 (82)
49 2opv_A KHSRP protein; KH domai 94.6 0.1 3.5E-06 42.8 7.4 69 105-190 15-85 (85)
50 2p2r_A Poly(RC)-binding protei 93.9 0.075 2.6E-06 42.6 5.0 70 104-191 5-75 (76)
51 1dtj_A RNA-binding neurooncolo 93.8 0.11 3.6E-06 41.5 5.8 72 105-191 4-76 (76)
52 1wvn_A Poly(RC)-binding protei 93.7 0.085 2.9E-06 43.0 5.2 70 104-191 6-76 (82)
53 3v69_A Protein filia; RNA-bind 93.7 0.061 2.1E-06 49.7 4.7 69 222-301 63-131 (140)
54 2hh2_A KH-type splicing regula 93.6 0.13 4.3E-06 44.4 6.3 73 106-193 9-82 (107)
55 1e3p_A Guanosine pentaphosphat 93.5 0.041 1.4E-06 62.0 3.8 93 225-346 608-700 (757)
56 1x4m_A FAR upstream element bi 93.4 0.13 4.5E-06 43.1 5.9 72 104-191 15-87 (94)
57 3cdi_A Polynucleotide phosphor 93.3 0.023 8E-07 63.6 1.5 54 225-293 570-623 (723)
58 1we8_A Tudor and KH domain con 93.1 0.21 7.2E-06 42.6 6.9 77 100-192 11-88 (104)
59 1j5k_A Heterogeneous nuclear r 93.0 0.13 4.3E-06 42.7 5.2 70 104-191 14-84 (89)
60 2hh3_A KH-type splicing regula 92.8 0.14 4.8E-06 44.4 5.4 69 106-192 13-82 (106)
61 2cte_A Vigilin; K homology typ 92.7 0.21 7.3E-06 41.9 6.3 68 104-191 17-85 (94)
62 2dgr_A Ring finger and KH doma 92.6 0.19 6.3E-06 41.9 5.7 67 104-191 10-77 (83)
63 1vig_A Vigilin; RNA-binding pr 92.3 0.19 6.6E-06 40.1 5.2 64 105-188 6-70 (71)
64 1x4n_A FAR upstream element bi 92.2 0.31 1.1E-05 40.7 6.6 71 104-192 15-86 (92)
65 2axy_A Poly(RC)-binding protei 91.6 0.38 1.3E-05 38.5 6.2 67 105-191 6-73 (73)
66 2ctk_A Vigilin; K homology typ 91.0 0.28 9.5E-06 42.2 5.2 67 104-190 17-84 (104)
67 1ec6_A RNA-binding protein NOV 90.9 0.45 1.5E-05 39.1 6.1 70 107-191 6-76 (87)
68 1tua_A Hypothetical protein AP 90.2 0.31 1.1E-05 46.6 5.2 69 210-298 5-77 (191)
69 2ctm_A Vigilin; K homology typ 89.7 0.49 1.7E-05 40.0 5.5 68 104-190 17-85 (95)
70 2ctl_A Vigilin; K homology typ 89.5 0.95 3.2E-05 38.4 7.2 70 104-190 17-87 (97)
71 4fxw_B Splicing factor 1; UHM, 81.2 0.97 3.3E-05 41.0 3.3 52 149-200 70-121 (124)
72 2ctj_A Vigilin; K homology typ 80.3 3.1 0.00011 35.3 6.0 66 105-190 18-85 (95)
73 2ctf_A Vigilin; K homology typ 75.9 4.7 0.00016 34.5 5.9 64 104-190 27-92 (102)
74 1wjw_A Phosphoacetylglucosamin 49.6 50 0.0017 28.5 7.3 50 235-298 45-96 (112)
75 2cpq_A FragIle X mental retard 47.4 11 0.00038 32.2 2.8 62 104-187 15-78 (91)
76 2z0s_A Probable exosome comple 42.8 26 0.00088 33.9 4.9 46 225-285 158-203 (235)
77 3u1k_A Polyribonucleotide nucl 34.4 25 0.00084 39.1 3.7 60 107-189 570-630 (630)
78 2cxc_A NUSA; transcription ter 31.0 10 0.00035 34.8 0.0 28 226-253 47-74 (144)
79 4hhu_A OR280; engineered prote 28.2 1.1E+02 0.0036 28.3 6.1 46 228-284 46-100 (170)
80 2jpi_A Hypothetical protein; a 27.5 64 0.0022 28.5 4.5 72 225-296 26-104 (118)
81 2ba0_A Archeal exosome RNA bin 25.7 41 0.0014 32.5 3.1 40 224-278 145-184 (229)
82 4did_B Inositol phosphate phos 23.5 54 0.0018 30.6 3.3 63 225-308 57-120 (152)
83 3ldc_A Calcium-gated potassium 23.3 43 0.0015 27.0 2.4 15 398-413 43-57 (82)
84 2kpo_A Rossmann 2X2 fold prote 20.7 82 0.0028 27.2 3.7 22 269-290 3-24 (110)
85 3iev_A GTP-binding protein ERA 20.6 22 0.00074 34.7 0.1 39 208-251 239-285 (308)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=2.1e-30 Score=231.16 Aligned_cols=110 Identities=36% Similarity=0.660 Sum_probs=102.2
Q ss_pred CCCcccceeEEEecCC-CCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCC-CCCCCcEEEEEcCCHHH
Q 008318 203 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQG-EVHQPLHLFLSSNNPKS 280 (570)
Q Consensus 203 ~~G~k~~eeKI~Ipvd-~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~g-EsdEPLHV~Isa~~~e~ 280 (570)
..|++|+++|||||++ .+|+|||+|+||||+|+|+|+|++||||||.||||||+++|+..+ |++|||||+|++.+.++
T Consensus 6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~ 85 (119)
T 2yqr_A 6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 85 (119)
T ss_dssp CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence 3577999999999999 699999999999999999999999999999999999999999888 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccCCCCc
Q 008318 281 LEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 316 (570)
Q Consensus 281 v~kAk~LiEnLL~tV~eEy~a~r~~~~k~y~avppp 316 (570)
+++|++||++||.+++++|+.| ++..+.+.|-
T Consensus 86 i~~A~~~Ie~Ll~~v~~~~~~~----~~q~~~~~p~ 117 (119)
T 2yqr_A 86 LAAAKKLCENLLQTVHAEYSRF----VNQINTAVPL 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHSCCCCC
T ss_pred HHHHHHHHHHHhhchHHHHHHH----HHhhCCCCCC
Confidence 9999999999999999999997 4556666554
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.92 E-value=1e-26 Score=212.81 Aligned_cols=95 Identities=20% Similarity=0.414 Sum_probs=84.1
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCC-------CCCCC--CCCCCcEEEEEcCCHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNS-------EGLQG--EVHQPLHLFLSSNNPK 279 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~-------E~~~g--EsdEPLHV~Isa~~~e 279 (570)
+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++. .+..+ +++|||||+|++.+++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57999999999999999999999999999999999999999999999862 12222 6899999999999886
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhccc
Q 008318 280 -----SLEEAKRLAENLLDTISAECGASR 303 (570)
Q Consensus 280 -----~v~kAk~LiEnLL~tV~eEy~a~r 303 (570)
.|++|+++|++||.++.+.++.++
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K 110 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLK 110 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHH
Confidence 899999999999998887666554
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.89 E-value=3.1e-24 Score=193.68 Aligned_cols=88 Identities=23% Similarity=0.392 Sum_probs=80.1
Q ss_pred ccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCC---C---CC-CCCCCcEEEEEcCCHH
Q 008318 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG---L---QG-EVHQPLHLFLSSNNPK 279 (570)
Q Consensus 207 k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~---~---~g-EsdEPLHV~Isa~~~e 279 (570)
..+++|||||++.||+|||+|+||||+|+|+|+|++||||||.||||||++.+. . .. +++|||||+|++.+.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 467899999999999999999999999999999999999999999999987431 1 12 6789999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008318 280 SLEEAKRLAENLLDT 294 (570)
Q Consensus 280 ~v~kAk~LiEnLL~t 294 (570)
.+++|+++|++||..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.33 E-value=6.4e-12 Score=113.23 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=111.8
Q ss_pred EEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008318 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIe 185 (570)
+|.|..- .++.++-+ |+++++|++.|||.|..--.-+ ++..--.+.|.|.. ..+.+|..+|.
T Consensus 6 ~~~ip~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~------~~~~~r~v~I~G~~---------e~v~~A~~~I~ 68 (163)
T 3krm_A 6 QVFIPAQ--AVGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPP---------EAQFKAQGRIY 68 (163)
T ss_dssp EEEEEGG--GHHHHHCGGGHHHHHHHHHHTCEEEECCCSS------TTCSEEEEEEEECH---------HHHHHHHHHHH
T ss_pred EEEechh--hcceeECCCcHHHHHHHHHHCCeEEEcCCCC------CCCCceEEEEEcCH---------HHHHHHHHHHH
Confidence 4444433 46777866 9999999999999987632111 22333456888953 47888999999
Q ss_pred HHHHcCCCCCCccccccCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCC
Q 008318 186 EMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEV 265 (570)
Q Consensus 186 EILKE~P~~~p~~~~p~~~G~k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEs 265 (570)
+++.+...+.+. .......+|.||- +++|+|||++|.++|+|+++|||+|.|-..|.- .+
T Consensus 69 ~~~~e~~~~~~~-------~~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~-------~~ 128 (163)
T 3krm_A 69 GKLKEENFFGPK-------EEVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP-------DE 128 (163)
T ss_dssp HHHHHTTSSCSS-------CCCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC-------CT
T ss_pred HHHhcccccccc-------cCCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC-------CC
Confidence 999876433221 1123345777762 579999999999999999999999999765431 23
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008318 266 HQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 300 (570)
Q Consensus 266 dEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~eEy~ 300 (570)
.+.-.|.|+| +++++++|++++++||+.+++..+
T Consensus 129 ~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~ 162 (163)
T 3krm_A 129 NDQVIVKIIG-HFYASQMAQRKIRDILAQVKQQHQ 162 (163)
T ss_dssp TSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCceEEEEEe-CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445788999 899999999999999998876653
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.25 E-value=7.6e-11 Score=105.66 Aligned_cols=158 Identities=18% Similarity=0.239 Sum_probs=109.7
Q ss_pred EEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008318 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (570)
Q Consensus 105 ~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aiae 183 (570)
..+|.|..- .+++++-+ |+++++|+++|||.|.+-- .+ ..++..--.+.|.|.. ..|++|..+
T Consensus 3 ~~~~~Vp~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~~----~~-~~~~~~~r~v~I~G~~---------~~v~~A~~~ 66 (164)
T 2jvz_A 3 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQ----DG-SQNTNVDKPLRIIGDP---------YKVQQACEM 66 (164)
T ss_dssp EEEEEECTT--CHHHHTCTTTHHHHHHHHTSCSEEEECC----CT-TSSSSSCEEEEEEECH---------HHHHHHHHH
T ss_pred EEEEEechh--heeEEECCChHHHHHHHHHhCCeEEEec----CC-CCCCCCceEEEEEcCH---------HHHHHHHHH
Confidence 346777654 47888865 9999999999999986521 11 1112222356788853 479999999
Q ss_pred HHHHHHcCCCCCCccccccCCCcc-cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCC
Q 008318 184 VEEMLKQGHAGFPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 262 (570)
Q Consensus 184 IeEILKE~P~~~p~~~~p~~~G~k-~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~ 262 (570)
|.++|.+....... ..+.|+.. ....+|.||- +++|+|||++|.++|+|+++|||+|.|-....
T Consensus 67 I~~ii~e~~~~~~~--~~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------- 131 (164)
T 2jvz_A 67 VMDILRERDQGGFG--DRNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------- 131 (164)
T ss_dssp HHHHTTCSSSCCCS--SCSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-------
T ss_pred HHHHHHhccCCCCC--CccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-------
Confidence 99999876421100 01223322 2345666652 37999999999999999999999999975421
Q ss_pred CCCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Q 008318 263 GEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 296 (570)
Q Consensus 263 gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~ 296 (570)
....-.|.|+|. ++++++|++++++||+.+.
T Consensus 132 --~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 132 --TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp --TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 122357888886 9999999999999998754
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.08 E-value=5.9e-10 Score=101.77 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=101.7
Q ss_pred EEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008318 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIe 185 (570)
+|.|..- .++.++-+ |+++++|+++|||.|.+... .....+ -.+.|.|.. ..|++|+.+|.
T Consensus 6 ~~~vp~~--~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~--r~v~I~G~~---------~~v~~A~~~I~ 67 (174)
T 1j4w_A 6 DVPIPRF--AVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPE--RIAQITGPP---------DRAQHAAEIIT 67 (174)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSE--EEEEEEECH---------HHHHHHHHHHH
T ss_pred EEEEChh--heeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCc--cEEEEEeCH---------HHHHHHHHHHH
Confidence 4444432 35667755 99999999999999887431 111223 355788874 47999999999
Q ss_pred HHHHcCCCCC--Cc-cc---cc---cCC--Cc--ccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEee
Q 008318 186 EMLKQGHAGF--PT-LQ---TV---MGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRG 252 (570)
Q Consensus 186 EILKE~P~~~--p~-~~---~p---~~~--G~--k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRG 252 (570)
+++.+..... .+ +. +. ..+ +. .....+|.||- +++|+|||++|.++|+|+++|||+|.|-.
T Consensus 68 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~ 141 (174)
T 1j4w_A 68 DLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQR 141 (174)
T ss_dssp HHHHHHC-----------------------------CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEEC
T ss_pred HHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECC
Confidence 9998653110 00 00 00 000 00 12356677752 46999999999999999999999999986
Q ss_pred ccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHH
Q 008318 253 RGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292 (570)
Q Consensus 253 RGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL 292 (570)
.... ......=.|.|++ +.+++++|++|++++|
T Consensus 142 ~~~~------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 142 NPPP------NADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CCTT------TSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CCCC------CCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 4211 1111224678888 8999999999999985
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=4.5e-10 Score=100.89 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=107.4
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+.-+|.|..- .++.++-+ |.++++|+++|||.|.+... +..--.+.|.|.. ..|++|..
T Consensus 5 ~~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~---------~~v~~A~~ 64 (160)
T 2jzx_A 5 LTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT---------NAIFKAFA 64 (160)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCH---------HHHHHHHH
Confidence 4445666543 36777755 89999999999999877431 1223456788863 47889999
Q ss_pred HHHHHHHcCCCCCCccccccCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCC
Q 008318 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 262 (570)
Q Consensus 183 eIeEILKE~P~~~p~~~~p~~~G~k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~ 262 (570)
+|.++|.+.......... .........++.||- +++|+|||++|.++|+|+++|||+|.|.+.. .
T Consensus 65 ~I~~~i~e~~~~~~~~~~--~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~------~- 129 (160)
T 2jzx_A 65 MIIDKLEEDISSSMTNST--AASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM------L- 129 (160)
T ss_dssp HHHHHHHHHHTSCCCSSS--CCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC------S-
T ss_pred HHHHHHHhhccccCCCCc--cCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC------C-
Confidence 999888775221100000 011123466778863 5799999999999999999999999997531 0
Q ss_pred CCCCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Q 008318 263 GEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293 (570)
Q Consensus 263 gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~ 293 (570)
.....=.|.|+| +++++++|+++++++|.
T Consensus 130 -~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 130 -PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp -TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred -CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 112345788888 89999999999999874
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.99 E-value=1.4e-09 Score=99.46 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=105.8
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeee--cceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 180 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTR--GrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~A 180 (570)
+..+|.|..- .++.++-| |+++++|+++|||.|.+. +.++|. ..++ .+.|.|.. ..|++|
T Consensus 6 ~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~----~~er--~v~I~G~~---------~~v~~A 68 (178)
T 2anr_A 6 YFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG----TTER--VCLIQGTI---------EALNAV 68 (178)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT----SSEE--EEEEEECH---------HHHHHH
T ss_pred EEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC----CCCc--eEEEEeCH---------HHHHHH
Confidence 3456666543 46777766 899999999999998763 222211 2233 46788863 478999
Q ss_pred HHHHHHHHHcCCCCCCccc-----cc--cCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeec
Q 008318 181 AAMVEEMLKQGHAGFPTLQ-----TV--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGR 253 (570)
Q Consensus 181 iaeIeEILKE~P~~~p~~~-----~p--~~~G~k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGR 253 (570)
+.+|.+++.+.+......+ .+ ..........+|.||- +++|+|||++|.++|.|+++|||+|.|-..
T Consensus 69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 9999999987643211000 00 0001123456777763 478999999999999999999999999754
Q ss_pred cCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Q 008318 254 GSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293 (570)
Q Consensus 254 GSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~ 293 (570)
... .....=.|.|+|. .+++++|++|++++|.
T Consensus 143 ~~~-------~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 143 PDG-------INLQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp C-----------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCC-------CCCCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 211 0112246777776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.81 E-value=9.7e-09 Score=85.08 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=59.0
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
....+|.||- +++|+|||++|.++|.|+++|||+|.|...|+. ....+-+|.|++ +++++++|++|
T Consensus 13 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~-------~~~~er~v~I~G-~~~~v~~A~~~ 78 (85)
T 2opv_A 13 GTVQEIMIPA------GKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ-------NTNVDKPLRIIG-DPYKVQQACEM 78 (85)
T ss_dssp SEEEEEEECT------TTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS-------STTSCEEEEEEE-CHHHHHHHHHH
T ss_pred CEEEEEEeCh------hheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC-------CCCCceEEEEEe-CHHHHHHHHHH
Confidence 3456788864 369999999999999999999999999876542 112345799999 99999999999
Q ss_pred HHHHHH
Q 008318 288 AENLLD 293 (570)
Q Consensus 288 iEnLL~ 293 (570)
+++|+.
T Consensus 79 I~~i~~ 84 (85)
T 2opv_A 79 VMDILR 84 (85)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999974
No 10
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.66 E-value=2e-08 Score=84.93 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=60.4
Q ss_pred CcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHH
Q 008318 205 GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEA 284 (570)
Q Consensus 205 G~k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kA 284 (570)
++.....+|.||-+ ++|+|||++|.++|+|+++|||+|.|...|... ....-.|.|++ +++++++|
T Consensus 11 ~p~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~~~~r~v~I~G-~~~~v~~A 76 (94)
T 1x4m_A 11 GPGNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-------TGADKPLRITG-DPYKVQQA 76 (94)
T ss_dssp CCCCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-------SCSCEEEEEEE-CTTTHHHH
T ss_pred CCCcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-------CCCceEEEEEe-CHHHHHHH
Confidence 33455678888643 799999999999999999999999998654321 12346788998 99999999
Q ss_pred HHHHHHHHH
Q 008318 285 KRLAENLLD 293 (570)
Q Consensus 285 k~LiEnLL~ 293 (570)
++||++||.
T Consensus 77 ~~~I~~~i~ 85 (94)
T 1x4m_A 77 KEMVLELIR 85 (94)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999999985
No 11
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.60 E-value=5.1e-08 Score=80.28 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=58.4
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|...- +....-.|.|++ +++++++|++|
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---------~~~~~~~v~I~G-~~~~v~~A~~~ 69 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPL---------EGSEDRIITITG-TQDQIQNAQYL 69 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCTT---------SCSSEEEEEEEE-CHHHHHHHHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCCC---------CCCCceEEEEEe-CHHHHHHHHHH
Confidence 45667888754 689999999999999999999999996421 111235788998 69999999999
Q ss_pred HHHHHHHHH
Q 008318 288 AENLLDTIS 296 (570)
Q Consensus 288 iEnLL~tV~ 296 (570)
+++++....
T Consensus 70 I~~~i~~~~ 78 (82)
T 1zzk_A 70 LQNSVKQYS 78 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999987543
No 12
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.52 E-value=6.5e-08 Score=77.84 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=55.5
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiE 289 (570)
..+|.||- +++|+|||++|.++|+|+++|||+|.|...+... .....-.|.|+|. ++++++|++|++
T Consensus 4 ~~~i~Ip~------~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~------~~~~~~~v~I~G~-~~~v~~A~~~I~ 70 (76)
T 1dtj_A 4 LVEMAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL------PGTRNRRVTITGS-PAATQAAQYLIS 70 (76)
T ss_dssp EEEEEEET------TTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS------TTCCEEEEEEEES-HHHHHHHHHHHH
T ss_pred EEEEEECh------HHcceEECCCchHHHHHHHHhCCEEEECcCCCCC------CCCceeEEEEEeC-HHHHHHHHHHHH
Confidence 35677764 3689999999999999999999999998653210 1123457888886 999999999999
Q ss_pred HHHH
Q 008318 290 NLLD 293 (570)
Q Consensus 290 nLL~ 293 (570)
++|.
T Consensus 71 ~~i~ 74 (76)
T 1dtj_A 71 QRVT 74 (76)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9864
No 13
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.52 E-value=6e-08 Score=81.70 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=58.7
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|..... ....-.|.|++. ++++++|++|
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~---------g~~~r~v~I~G~-~e~v~~A~~~ 77 (92)
T 1x4n_A 14 VMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSG---------GLPERSCMLTGT-PESVQSAKRL 77 (92)
T ss_dssp CEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCT---------TCSEEEEEEEEC-HHHHHHHHHH
T ss_pred CEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCC---------CCCccEEEEEeC-HHHHHHHHHH
Confidence 45677888753 7999999999999999999999999986521 123357888886 9999999999
Q ss_pred HHHHHHHH
Q 008318 288 AENLLDTI 295 (570)
Q Consensus 288 iEnLL~tV 295 (570)
|+++|...
T Consensus 78 I~~~i~~~ 85 (92)
T 1x4n_A 78 LDQIVEKG 85 (92)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998754
No 14
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.51 E-value=5.8e-08 Score=81.17 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=58.9
Q ss_pred ccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHH
Q 008318 207 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~ 286 (570)
.....+|.||.+ ++|+|||++|.++|+|+++|||+|.|...- .....-.|.|++. ++++++|++
T Consensus 12 ~~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~---------~~~~~~~v~I~G~-~e~v~~A~~ 75 (89)
T 1j5k_A 12 PIITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPL---------EGSEDRIITITGT-QDQIQNAQY 75 (89)
T ss_dssp CEEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSCC---------SSSSEEEEEEEEE-HHHHHHHHH
T ss_pred CeEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCCC---------CCCCccEEEEEcC-HHHHHHHHH
Confidence 356677888643 799999999999999999999999996420 1112356888886 999999999
Q ss_pred HHHHHHHHHHH
Q 008318 287 LAENLLDTISA 297 (570)
Q Consensus 287 LiEnLL~tV~e 297 (570)
|++++|.....
T Consensus 76 ~I~~~i~e~~g 86 (89)
T 1j5k_A 76 LLQNSVKQYSG 86 (89)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhhhc
Confidence 99999876543
No 15
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=1.4e-07 Score=82.03 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=56.1
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiE 289 (570)
..+|.||-+ ++|+|||++|+++|+|+++|||+|.|.-.+. ...+-.|.|++. ++++++|++||+
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~---------~~~er~V~I~G~-~e~v~~A~~~I~ 75 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG---------TGPEKIAHIMGP-PDRCEHAARIIN 75 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSCS---------SSSEEEEEEESS-HHHHHHHHHHHH
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCCC---------CCceeEEEEEeC-HHHHHHHHHHHH
Confidence 467777644 5899999999999999999999999974311 123457888876 999999999999
Q ss_pred HHHHHH
Q 008318 290 NLLDTI 295 (570)
Q Consensus 290 nLL~tV 295 (570)
+||...
T Consensus 76 ~ii~~~ 81 (106)
T 2hh3_A 76 DLLQSL 81 (106)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998754
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.49 E-value=8.4e-08 Score=93.15 Aligned_cols=147 Identities=21% Similarity=0.215 Sum_probs=97.8
Q ss_pred EEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 008318 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (570)
Q Consensus 106 ~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeI 184 (570)
..|.|..- +.++++-+ |.++..|+++||+.|..-- .+... .|.+.+.+.|. .++++|..+|
T Consensus 36 ~~i~IP~~--kig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d~----~~i~kA~~~I 97 (219)
T 2e3u_A 36 EYVKIPKD--RIAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETEDP----LAVWKARDIV 97 (219)
T ss_dssp EEEECCHH--HHHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCSH----HHHHHHHHHH
T ss_pred EEEEeCHH--HhhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCCH----HHHHHHHHHH
Confidence 36777765 57888877 8999999999999886531 13333 45665422221 4799999999
Q ss_pred HHHHHcCCCCCCccc---cccCCCcccceeEEEecC---CCCCCC--ceeeEEeCCCchhHHHHHhhhCcEEEEeeccCc
Q 008318 185 EEMLKQGHAGFPTLQ---TVMGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNDQYINHIMNETGATVLLRGRGSG 256 (570)
Q Consensus 185 eEILKE~P~~~p~~~---~p~~~G~k~~eeKI~Ipv---d~~P~F--NfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg 256 (570)
+.+.... .++.. +-++ ...+.+.|+. -.-+++ ..+|+|||++|.|+|.||+.|||+|+|-|+
T Consensus 98 ~~i~rg~---~~e~g~~ll~dd----~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~--- 167 (219)
T 2e3u_A 98 LAIGRGF---SPERAFRLLNEG----EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGK--- 167 (219)
T ss_dssp HHHHTTC---CHHHHGGGGSTT----CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETT---
T ss_pred HHHhccC---CccccceeccCC----ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCe---
Confidence 9987321 11100 0011 1123343431 112232 268999999999999999999999999653
Q ss_pred CCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Q 008318 257 NSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 294 (570)
Q Consensus 257 ~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~t 294 (570)
.|+|.| ++++++.|++++++||+.
T Consensus 168 -------------~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 168 -------------TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp -------------EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred -------------EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 367776 788999999999999964
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=1.1e-07 Score=82.40 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiE 289 (570)
..+|.||-+ ++|+|||++|.++|+|+++|||+|.|.....- ......-.|.|++ +.+++++|++||+
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------~~~~~~r~V~I~G-~~e~v~~A~~~I~ 74 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPP------NGDPNFKLFIIRG-SPQQIDHAKQLIE 74 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT------TCCTTEEEEEEES-CHHHHHHHHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC------CCCCCceEEEEEC-CHHHHHHHHHHHH
Confidence 467888643 68999999999999999999999999764211 1112235677888 9999999999999
Q ss_pred HHHHH
Q 008318 290 NLLDT 294 (570)
Q Consensus 290 nLL~t 294 (570)
++|..
T Consensus 75 ~~i~e 79 (107)
T 2hh2_A 75 EKIEG 79 (107)
T ss_dssp HHSCS
T ss_pred HHHhc
Confidence 99753
No 18
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=1.2e-07 Score=80.32 Aligned_cols=70 Identities=10% Similarity=0.122 Sum_probs=57.2
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
....|.||-+ ++|.|||++|.++|+|+++|||+|.|-..++ +.-.|.|+|. .+++++|+++|
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~-----------~~~~V~I~G~-~e~v~~A~~~I 78 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPDD-----------PSNQIKITGT-KEGIEKARHEV 78 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTTS-----------SCCEEEEEEC-HHHHHHHHHHH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCCC-----------CCCeEEEEEC-HHHHHHHHHHH
Confidence 4567777643 5899999999999999999999999854321 1248999998 99999999999
Q ss_pred HHHHHHHH
Q 008318 289 ENLLDTIS 296 (570)
Q Consensus 289 EnLL~tV~ 296 (570)
++|+....
T Consensus 79 ~~i~~~~~ 86 (94)
T 2cte_A 79 LLISAEQD 86 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHhhccc
Confidence 99987654
No 19
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=1.5e-07 Score=78.10 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=58.3
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiE 289 (570)
..+|.||- +.+|+|||++|.++|+|+++|||+|.|...+... .....-.|.|+|. ++++++|++|++
T Consensus 4 t~~i~IP~------~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~------~g~~~r~v~I~G~-~~~v~~A~~~I~ 70 (87)
T 1ec6_A 4 LVEIAVPE------NLVGAILGKGGKTLVEYQELTGARIQISKKGEFL------PGTRNRRVTITGS-PAATQAAQYLIS 70 (87)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS------TTSCEEEEEEESS-HHHHHHHHHHHH
T ss_pred EEEEEECh------HHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC------CCCCceEEEEEcC-HHHHHHHHHHHH
Confidence 35667764 3689999999999999999999999998643210 1123357888886 999999999999
Q ss_pred HHHHHHHHH
Q 008318 290 NLLDTISAE 298 (570)
Q Consensus 290 nLL~tV~eE 298 (570)
++|......
T Consensus 71 ~~i~~~~~~ 79 (87)
T 1ec6_A 71 QRVTYEQGV 79 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHhccccc
Confidence 999875443
No 20
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.44 E-value=2.4e-07 Score=79.57 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=57.7
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
...+|.||.+ ++|+|||++|.++|+|+++|||+|.|-....+ ...+.-.|.|++.+. ++++|++||
T Consensus 15 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-------~~~~~~~V~I~G~~~-~v~~A~~~I 80 (104)
T 1we8_A 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEG-------TLLLSRLIKISGTQK-EVAAAKHLI 80 (104)
T ss_dssp EEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-------SSSSEEEEEEEEEHH-HHHHHHHHH
T ss_pred EEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCC-------CCCCcceEEEEcCHH-HHHHHHHHH
Confidence 4577888643 68999999999999999999999999765321 112346788988665 799999999
Q ss_pred HHHHHHH
Q 008318 289 ENLLDTI 295 (570)
Q Consensus 289 EnLL~tV 295 (570)
+++|...
T Consensus 81 ~~~i~e~ 87 (104)
T 1we8_A 81 LEKVSED 87 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9998753
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=3.2e-07 Score=78.38 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=60.8
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
.+..+|.||- .++|+|||++|.++|+|+++|||+|.|--.|.. ....-.|.|+|. .+++++|+++
T Consensus 16 ~~~~~i~Ip~------~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~--------~~~~~~V~I~G~-~e~v~~A~~~ 80 (97)
T 2ctl_A 16 SFKLSVTVDP------KYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG--------NQPQDQITITGY-EKNTEAARDA 80 (97)
T ss_dssp TCEEEEECCT------TTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTC--------SSCSSEEEEESC-HHHHHHHHHH
T ss_pred ceeEEEEECH------HHhhhcCCCCchhHHHHHHHHCCEEEecCCCCC--------CCCccEEEEEeC-HHHHHHHHHH
Confidence 3456777753 358999999999999999999999999754421 123357999997 9999999999
Q ss_pred HHHHHHHHHHHh
Q 008318 288 AENLLDTISAEC 299 (570)
Q Consensus 288 iEnLL~tV~eEy 299 (570)
|++|+..+.++.
T Consensus 81 I~~iv~e~e~~~ 92 (97)
T 2ctl_A 81 ILRIVGELEQMS 92 (97)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 999998776543
No 22
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=1.3e-07 Score=80.63 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=62.1
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
.....|.||-+ ++|+|||++|.+++.|+++|||+|.|-..|+. ..-.|.|++. ++++++|+++
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~----------~~~~V~I~G~-~e~v~~A~~~ 78 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP----------DPNCVTVTGL-PENVEEAIDH 78 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCS----------CTTEEEEESC-HHHHHHHHHH
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCC----------CCcEEEEEcC-HHHHHHHHHH
Confidence 34567777533 58899999999999999999999999665431 2457999998 6999999999
Q ss_pred HHHHHHHHHHHhhc
Q 008318 288 AENLLDTISAECGA 301 (570)
Q Consensus 288 iEnLL~tV~eEy~a 301 (570)
+++|+....+++..
T Consensus 79 I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 79 ILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999877776644
No 23
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=78.96 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=51.7
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
....+|.||- +++|.|||++|+++|+|+++|||+|+|-.++ +|+ .+.|++. .+++++|++|
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~-----------~~~-~v~ItG~-~e~v~~A~~~ 69 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD-----------KEP-VFAVTGM-PENVDRAREE 69 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS-----------SCC-EEEEEEC-TTTHHHHHHH
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC-----------CCC-eEEEEcC-HHHHHHHHHH
Confidence 3456677752 6899999999999999999999999996431 132 3666665 5999999999
Q ss_pred HHHHH
Q 008318 288 AENLL 292 (570)
Q Consensus 288 iEnLL 292 (570)
|++++
T Consensus 70 I~~~i 74 (83)
T 2dgr_A 70 IEAHI 74 (83)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 24
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.42 E-value=1.2e-07 Score=76.77 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=55.7
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
...+|.||- +++|.|||++|.++|+|+++|||+|.|.... +....-.|.|+|. ++++++|++|+
T Consensus 5 ~~~~i~Ip~------~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---------~~~~~~~v~I~G~-~~~v~~A~~~I 68 (76)
T 2p2r_A 5 TSHELTIPN------DLIGCIIGRQGAKINEIRQMSGAQIKIANPV---------EGSTDRQVTITGS-AASISLAQYLI 68 (76)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCCC---------TTCSEEEEEEEEC-HHHHHHHHHHH
T ss_pred eEEEEEECh------HHcceEECCCChHHHHHHHHHCCEEEEcCCC---------CCCCeEEEEEEeC-HHHHHHHHHHH
Confidence 446777764 3689999999999999999999999997521 1223457888886 99999999999
Q ss_pred HHHHH
Q 008318 289 ENLLD 293 (570)
Q Consensus 289 EnLL~ 293 (570)
+++|.
T Consensus 69 ~~~i~ 73 (76)
T 2p2r_A 69 NVRLS 73 (76)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99874
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.40 E-value=1.6e-07 Score=81.28 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=61.0
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
..+.|.|| ..++|+|||++|.++|.|+++|||+|.|--.|+ ++-.|.|+|.+ +++++|++++
T Consensus 17 ~~~~i~Ip------~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-----------~~~~V~I~G~~-e~v~~A~~~I 78 (104)
T 2ctk_A 17 VTIEVEVP------FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----------QSDIIAITGLA-ANLDRAKAGL 78 (104)
T ss_dssp EEEEEECC------HHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-----------TCCEEEEEECH-HHHHHHHHHH
T ss_pred EEEEEEEC------hHHccceeCCCchHHHHHHHHHCCEEEecCCCC-----------CcceEEEEcCH-HHHHHHHHHH
Confidence 35667774 346899999999999999999999999965443 12389999985 9999999999
Q ss_pred HHHHHHHHHHhhc
Q 008318 289 ENLLDTISAECGA 301 (570)
Q Consensus 289 EnLL~tV~eEy~a 301 (570)
++|+.....+...
T Consensus 79 ~~i~~e~e~~~~d 91 (104)
T 2ctk_A 79 LERVKELQAEQED 91 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhHHHhHHH
Confidence 9999988876643
No 26
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.36 E-value=2e-07 Score=75.44 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=54.6
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|+|. ++++++|++|+
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~-----------~er~v~I~G~-~~~v~~A~~~I 66 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-----------PERIITLAGP-TNAIFKAFAMI 66 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC-----------SEEEEEEEEC-HHHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC-----------CcEEEEEEeC-HHHHHHHHHHH
Confidence 345677753 46999999999999999999999999975432 1245888888 99999999999
Q ss_pred HHHHH
Q 008318 289 ENLLD 293 (570)
Q Consensus 289 EnLL~ 293 (570)
+++|.
T Consensus 67 ~~~l~ 71 (73)
T 2axy_A 67 IDKLE 71 (73)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99885
No 27
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.35 E-value=1.7e-07 Score=76.98 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=55.9
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|.... +....-.|.|++. ++++++|++|
T Consensus 5 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---------~~~~~r~v~I~G~-~~~v~~A~~~ 68 (82)
T 1wvn_A 5 QTTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV---------EGSSGRQVTITGS-AASISLAQYL 68 (82)
T ss_dssp CEEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC---------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred cEEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC---------CCCCceEEEEEcC-HHHHHHHHHH
Confidence 34567788643 689999999999999999999999997531 1123457888875 5999999999
Q ss_pred HHHHHHHH
Q 008318 288 AENLLDTI 295 (570)
Q Consensus 288 iEnLL~tV 295 (570)
++++|..-
T Consensus 69 I~~~i~~~ 76 (82)
T 1wvn_A 69 INARLSSE 76 (82)
T ss_dssp HHHHTC--
T ss_pred HHHHHHhh
Confidence 99998643
No 28
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.29 E-value=5.1e-07 Score=72.83 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=52.6
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiE 289 (570)
...|.|+ -.++|.|||++|.++++|+++|||+|.|--.|. .+-.|.|+|. .+++++|+++++
T Consensus 6 ~~~i~I~------~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~-----------~~~~V~I~G~-~~~v~~A~~~I~ 67 (71)
T 1vig_A 6 YVEINID------HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE-----------KSNLIRIEGD-PQGVQQAKRELL 67 (71)
T ss_dssp EEEEEEC------SSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS-----------SSEEEEEEES-SHHHHHHHHHHH
T ss_pred EEEEEEC------HHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC-----------cccEEEEEcC-HHHHHHHHHHHH
Confidence 4566664 336899999999999999999999999864432 2247899998 689999999999
Q ss_pred HHH
Q 008318 290 NLL 292 (570)
Q Consensus 290 nLL 292 (570)
+|+
T Consensus 68 ~i~ 70 (71)
T 1vig_A 68 ELA 70 (71)
T ss_dssp HTC
T ss_pred HHh
Confidence 885
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.12 E-value=1.9e-06 Score=82.46 Aligned_cols=137 Identities=16% Similarity=0.107 Sum_probs=88.9
Q ss_pred cceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 008318 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 195 (570)
Q Consensus 117 ~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIeEILKE~P~~~ 195 (570)
+-+++.+ |++...|++.+|+.|..-. .++.. .|.....+.|. .++.+|...|+.+...-+
T Consensus 15 vg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V--~i~t~~~t~dp----~~i~KA~dlI~ai~rgf~--- 75 (191)
T 1tua_A 15 LGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMV--IVEPEAEGIPP----VNLMKAAEVVKAISLGFP--- 75 (191)
T ss_dssp HHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEE--EEEESSTTSCH----HHHHHHHHHHHHHHHTCC---
T ss_pred hhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeE--EEEeCCCCCCH----HHHHHHHHHHHHHHcCCC---
Confidence 4445544 8999999999999987643 23333 33422222222 368889999988765311
Q ss_pred Cccc--cccCCCcccceeEEEecCCCC-C----C-CceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCC
Q 008318 196 PTLQ--TVMGNGVQAMSTSVFLGFDAD-A----S-LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQ 267 (570)
Q Consensus 196 p~~~--~p~~~G~k~~eeKI~Ipvd~~-P----~-FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdE 267 (570)
++.. .-.+ -..-+.+.|+ .+ . . -..+|+|||++|.|+|.||+.|||+|.|-|+
T Consensus 76 ~e~A~~Ll~D---d~~~e~i~i~--~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------- 136 (191)
T 1tua_A 76 PEKAFRLLEE---DQILVVVDLK--QVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY-------------- 136 (191)
T ss_dssp HHHHGGGGST---TEEEEEEETH--HHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS--------------
T ss_pred HHHhhhcccC---cceeEEEEcc--cccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC--------------
Confidence 1100 0000 0112333333 11 0 0 1268999999999999999999999999763
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHH
Q 008318 268 PLHLFLSSNNPKSLEEAKRLAENLLDT 294 (570)
Q Consensus 268 PLHV~Isa~~~e~v~kAk~LiEnLL~t 294 (570)
.++|.| .++.++.|++.+++||..
T Consensus 137 --~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 --EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp --EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred --EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 577766 789999999999999964
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.10 E-value=5.2e-06 Score=75.11 Aligned_cols=137 Identities=15% Similarity=0.279 Sum_probs=89.2
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
|+.++.|..=+ +..++-+ |+++..|++++|..|. .|- .++-.| .+.+.+. ..|.+|
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~~~-------~~~~~~-i~~~~~p--------~~v~~~-- 60 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---DLD-------EDTCTF-HIYGEDQ--------DAVKKA-- 60 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---EEE-------TTTTEE-EEEESSH--------HHHHHH--
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---ccC-------CCchhe-eeccCCH--------HHHHHH--
Confidence 45666665553 6777744 9999999999994332 121 223334 4566542 245443
Q ss_pred HHHHHHHcCCCCCCccccccCCCcccceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCc-EEEEeeccCcCCCCC
Q 008318 183 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA-TVLLRGRGSGNSEGL 261 (570)
Q Consensus 183 eIeEILKE~P~~~p~~~~p~~~G~k~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGA-KI~IRGRGSg~~E~~ 261 (570)
+++|.- .+..|.||- +.+|++||.+|.|+|.|++.||| +|.|.+.....
T Consensus 61 --~~~l~~------------------~e~~v~Vp~------~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~---- 110 (144)
T 2qnd_A 61 --RSFLEF------------------AEDVIQVPR------NLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN---- 110 (144)
T ss_dssp --HHHHCE------------------EEEEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----
T ss_pred --HHhhhc------------------ceEEEEECH------HHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----
Confidence 333321 125666653 26899999999999999999997 99999763211
Q ss_pred CCCCCCCc-EEEEEcCCHHHHHHHHHHHHHHHHHH
Q 008318 262 QGEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 295 (570)
Q Consensus 262 ~gEsdEPL-HV~Isa~~~e~v~kAk~LiEnLL~tV 295 (570)
...++.+ -|.|+| +.+++++|++|++++|+.+
T Consensus 111 -~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 111 -VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp -CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred -ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 0122333 255665 8899999999999999753
No 31
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.93 E-value=5.2e-06 Score=71.03 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=55.8
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhh-CcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNET-GATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ET-GAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
.++.|.||-+ +.+.|||++|.+++.|++|| ||+|.|--.|+. .-.|.|.|.+. .+++|+++
T Consensus 17 vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~-----------~~~V~I~G~~~-~v~~A~~~ 78 (95)
T 2ctj_A 17 AEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG-----------SDTVVIRGPSS-DVEKAKKQ 78 (95)
T ss_dssp CCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT-----------CCEEEEESCHH-HHHHHHHH
T ss_pred EEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC-----------cceEEEEcCHH-HHHHHHHH
Confidence 3566777533 57889999999999999999 999988654432 24799999888 99999999
Q ss_pred HHHHHHHH
Q 008318 288 AENLLDTI 295 (570)
Q Consensus 288 iEnLL~tV 295 (570)
+++|+..+
T Consensus 79 I~~iv~e~ 86 (95)
T 2ctj_A 79 LLHLAEEK 86 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99998643
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=97.90 E-value=9.5e-06 Score=72.54 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=53.8
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q 008318 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAEN 290 (570)
Q Consensus 211 eKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEn 290 (570)
.+|.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. ....+-.|.|++ +++++++|+.++.+
T Consensus 4 ~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~-------~~~~~r~v~I~G-~~~~v~~A~~~I~~ 69 (164)
T 2jvz_A 4 QEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ-------NTNVDKPLRIIG-DPYKVQQACEMVMD 69 (164)
T ss_dssp EEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS-------SSSSCEEEEEEE-CHHHHHHHHHHHHH
T ss_pred EEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC-------CCCCceEEEEEc-CHHHHHHHHHHHHH
Confidence 46777533 69999999999999999999999998533210 112234678888 88999999999999
Q ss_pred HHHH
Q 008318 291 LLDT 294 (570)
Q Consensus 291 LL~t 294 (570)
++..
T Consensus 70 ii~e 73 (164)
T 2jvz_A 70 ILRE 73 (164)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8753
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.83 E-value=1.1e-05 Score=73.43 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=54.6
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q 008318 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAEN 290 (570)
Q Consensus 211 eKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEn 290 (570)
.+|.||- +.+|+|||++|.++|+|+++|||+|.|...- .....-.|.|++. .+++++|++++++
T Consensus 5 ~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---------~~~~~r~v~I~G~-~~~v~~A~~~I~~ 68 (174)
T 1j4w_A 5 IDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---------GTTPERIAQITGP-PDRAQHAAEIITD 68 (174)
T ss_dssp EEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---------TSCSEEEEEEEEC-HHHHHHHHHHHHH
T ss_pred EEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecCC---------CCCCccEEEEEeC-HHHHHHHHHHHHH
Confidence 4566653 3789999999999999999999999996420 0112346778777 9999999999999
Q ss_pred HHHHHH
Q 008318 291 LLDTIS 296 (570)
Q Consensus 291 LL~tV~ 296 (570)
+|....
T Consensus 69 ~~~~~~ 74 (174)
T 1j4w_A 69 LLRSVQ 74 (174)
T ss_dssp HHHHHC
T ss_pred HHHhcc
Confidence 987653
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.75 E-value=6.7e-06 Score=70.72 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=47.4
Q ss_pred eeeEEeCCCchhHHHHHhhhCcE-EEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHH
Q 008318 225 IAARIRGPNDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292 (570)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGAK-I~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL 292 (570)
.+|.+|||+|.++|.|+++|||+ |-|-- +.=.|.|.+.+.+++++|+++++.+-
T Consensus 25 kIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 25 LMGLAIGTHGSNIQQARKVPGVTAIELDE--------------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp HHHHHHTTTTHHHHHHHTSTTEEEEEEET--------------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred HhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 58999999999999999999998 99831 23579999999999999999998764
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.72 E-value=1.7e-05 Score=71.17 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=53.6
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiE 289 (570)
..++.||- +.+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|++. .+.+++|+.++.
T Consensus 6 ~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~-----------~~r~v~I~G~-~~~v~~A~~~I~ 67 (160)
T 2jzx_A 6 TIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC-----------PERIITLAGP-TNAIFKAFAMII 67 (160)
T ss_dssp EEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT-----------TEEEEEEEEE-HHHHHHHHHHHH
T ss_pred EEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCCC-----------CceEEEEEeC-HHHHHHHHHHHH
Confidence 45666653 36899999999999999999999999976432 2246778876 899999999998
Q ss_pred HHHHH
Q 008318 290 NLLDT 294 (570)
Q Consensus 290 nLL~t 294 (570)
+++..
T Consensus 68 ~~i~e 72 (160)
T 2jzx_A 68 DKLEE 72 (160)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.70 E-value=2.5e-05 Score=70.21 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=52.9
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q 008318 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAEN 290 (570)
Q Consensus 211 eKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEn 290 (570)
.+|.||- +++|.|||++|.++|+|+++|||+|.|--.+.. ....-.|.|++ +++++.+|+.+|.+
T Consensus 5 ~~~~ip~------~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~r~v~I~G-~~e~v~~A~~~I~~ 69 (163)
T 3krm_A 5 VQVFIPA------QAVGAIIGKKGQHIKQLSRFASASIKIAPPETP--------DSKVRMVIITG-PPEAQFKAQGRIYG 69 (163)
T ss_dssp EEEEEEG------GGHHHHHCGGGHHHHHHHHHHTCEEEECCCSST--------TCSEEEEEEEE-CHHHHHHHHHHHHH
T ss_pred EEEEech------hhcceeECCCcHHHHHHHHHHCCeEEEcCCCCC--------CCCceEEEEEc-CHHHHHHHHHHHHH
Confidence 4566653 368999999999999999999999999754321 11224577777 89999999999988
Q ss_pred HHHH
Q 008318 291 LLDT 294 (570)
Q Consensus 291 LL~t 294 (570)
++..
T Consensus 70 ~~~e 73 (163)
T 3krm_A 70 KLKE 73 (163)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8753
No 37
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=0.00013 Score=65.23 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=58.9
Q ss_pred eEEEEEEeC--C-CCc--ccceee-echhhHHHHHhHhCCeEeeecc---eeCCCCCCCCCCCeEEEEeeccchhhHHHH
Q 008318 103 IIAREIVIN--D-SES--SVRYKL-TKRHTQEEIQKCTGAVVITRGK---YRLPNAPPDGEKPLYLHISAGAHLKETAER 173 (570)
Q Consensus 103 ~f~~EIEIN--D-lPq--~~Ry~L-TKg~TQ~eIqe~TGA~VtTRGr---YyPPgk~~~gEpPLYL~Ieg~Te~kdt~ER 173 (570)
++.+.|.|. + +|. ..|-+| -+|.|+++|+++|||.|..||+ |+-+......+.+||++|++.+.
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~------- 83 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP------- 83 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH-------
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH-------
Confidence 456666553 2 443 345555 5699999999999999999986 22222223456799999999986
Q ss_pred HHHHHHHHHHHHHHHHc
Q 008318 174 ILAVDHAAAMVEEMLKQ 190 (570)
Q Consensus 174 i~aVd~AiaeIeEILKE 190 (570)
..+++|+.+|++|+..
T Consensus 84 -e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 84 -EGLAAAKKLCENLLQT 99 (119)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhc
Confidence 5899999999999865
No 38
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.58 E-value=3.8e-05 Score=70.09 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=53.0
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
...+|.||- +++|.|||++|.++|+|+++|||+|.|...+-.. . ...| -.|.|++. .+++++|++++
T Consensus 6 ~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~----~-~~~e-r~v~I~G~-~~~v~~A~~~I 72 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY----P-GTTE-RVCLIQGT-IEALNAVHGFI 72 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC----T-TSSE-EEEEEEEC-HHHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC----C-CCCC-ceEEEEeC-HHHHHHHHHHH
Confidence 445677753 3799999999999999999999999996542110 0 1112 24667764 89999999999
Q ss_pred HHHHH
Q 008318 289 ENLLD 293 (570)
Q Consensus 289 EnLL~ 293 (570)
++++.
T Consensus 73 ~~~~~ 77 (178)
T 2anr_A 73 AEKIR 77 (178)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88874
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.56 E-value=9.8e-05 Score=66.71 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=57.5
Q ss_pred EEEEEe--CCCCc---ccceeeechhhHHHHHhHhCCeEeeecceeC-CCC--C------CCCCCCeEEEEeeccchhhH
Q 008318 105 AREIVI--NDSES---SVRYKLTKRHTQEEIQKCTGAVVITRGKYRL-PNA--P------PDGEKPLYLHISAGAHLKET 170 (570)
Q Consensus 105 ~~EIEI--NDlPq---~~Ry~LTKg~TQ~eIqe~TGA~VtTRGrYyP-Pgk--~------~~gEpPLYL~Ieg~Te~kdt 170 (570)
...|.| .++|- --|.+=.+|.|+++|+++|||.|.+||+.-- .++ . ...+.+||++|++.+.
T Consensus 8 ~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~---- 83 (131)
T 1k1g_A 8 SDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM---- 83 (131)
T ss_dssp EEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH----
T ss_pred EEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH----
Confidence 444444 44552 2255568899999999999999999886421 111 1 1235699999999875
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 008318 171 AERILAVDHAAAMVEEMLKQG 191 (570)
Q Consensus 171 ~ERi~aVd~AiaeIeEILKE~ 191 (570)
..+++|+++|+++|++.
T Consensus 84 ----e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 ----ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp ----HHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHHhcc
Confidence 57999999999999874
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.22 E-value=0.00015 Score=79.84 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=49.9
Q ss_pred eEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q 008318 211 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAEN 290 (570)
Q Consensus 211 eKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEn 290 (570)
..+.|+.+ .+|.||||+|.++|.|+.+|||+|.|- +.=.|.|.+.|.+.+++|+++|++
T Consensus 569 ~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~---------------d~G~V~I~~~~~~~~~~A~~~I~~ 627 (630)
T 3u1k_A 569 ETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQV---------------DEETFSVFAPTPSAMHEARDFITE 627 (630)
T ss_dssp EEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEEC---------------SSSEEEEEESSHHHHHHHHHHTTC
T ss_pred EEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEc---------------CCcEEEEEeCCHHHHHHHHHHHHH
Confidence 45555433 488999999999999999999999874 224799999999999999999998
Q ss_pred HH
Q 008318 291 LL 292 (570)
Q Consensus 291 LL 292 (570)
|+
T Consensus 628 i~ 629 (630)
T 3u1k_A 628 IC 629 (630)
T ss_dssp --
T ss_pred Hh
Confidence 86
No 41
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.68 E-value=0.0011 Score=74.28 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=13.7
Q ss_pred eeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Q 008318 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 294 (570)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~t 294 (570)
.++.||||+|.++|.|+.|||++|-|. |.-.|.|.+.+.+.+++|+++++.|+..
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~---------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN---------------DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE---------------CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 478899999999999999999998764 2346789999999999999999999864
No 42
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.67 E-value=0.0019 Score=55.70 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=55.6
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhh-hCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~E-TGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~L 287 (570)
.+.+|.||- .|.+.|||.+|+++|+|+.+ ++++|.|-. +.--|.|.|+ .+.|++|+..
T Consensus 27 ~t~~i~vp~------~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------------~~~~ItI~G~-~~~V~~a~~~ 85 (102)
T 2ctf_A 27 TVSSVAAPS------WLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------------GEDKITLEGP-TEDVSVAQEQ 85 (102)
T ss_dssp EEEEEECCS------TTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------------SSCEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEeCH------HHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------------CCCEEEEECC-HHHHHHHHHH
Confidence 456666652 25678999999999999996 688886643 1126999998 9999999999
Q ss_pred HHHHHHHHHHHh
Q 008318 288 AENLLDTISAEC 299 (570)
Q Consensus 288 iEnLL~tV~eEy 299 (570)
++.|++...++.
T Consensus 86 I~~~v~el~~~~ 97 (102)
T 2ctf_A 86 IEGMVKDLINRS 97 (102)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhhc
Confidence 999999888764
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.56 E-value=0.0028 Score=58.20 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=47.8
Q ss_pred echhhHHHHHhHhCCeEeeecceeCC---------CCC--CCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHc
Q 008318 122 TKRHTQEEIQKCTGAVVITRGKYRLP---------NAP--PDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQ 190 (570)
Q Consensus 122 TKg~TQ~eIqe~TGA~VtTRGrYyPP---------gk~--~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIeEILKE 190 (570)
-+|.|++.|+++|||.|..||+=--- +.+ ...+-|||++|++.+. .+.++ ..+++|+++|+.+|..
T Consensus 25 PrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~-~~~~~--~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 25 PRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA-QNRAE--LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp TTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC-CHHHH--HHHHHHHHHHHHHSSC
T ss_pred CCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc-hhhHH--HHHHHHHHHHHHHCCC
Confidence 57999999999999999999852100 000 1356789999999764 11111 3699999999999864
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.38 E-value=0.0053 Score=64.22 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=44.6
Q ss_pred eeeEEeCCCc--hhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHH
Q 008318 225 IAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292 (570)
Q Consensus 225 fvgrIIGP~G--stlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL 292 (570)
+...|||-+| ..+++|+++|||+|.+-..++.. ......-.|.|+| ..++|.+|++.+++||
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~-----d~~~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRN-----ETRGNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC--------------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcc-----cccCCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 3667999999 45699999999999987665421 0112235678887 9999999999999987
No 45
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.15 E-value=0.0022 Score=67.09 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=52.1
Q ss_pred ccceeEEEecCCCCCCCceeeEEeCCCc--hhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHH
Q 008318 207 QAMSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEA 284 (570)
Q Consensus 207 k~~eeKI~Ipvd~~P~FNfvgrIIGP~G--stlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kA 284 (570)
...+.++.|+ ..|...|||.+| +++++|++||||+|.+=-+++... .. ...---|.|+| ..++|++|
T Consensus 28 ~~VTl~v~Ip------~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~---~~-~~ks~~VtItG-~~enVE~A 96 (376)
T 3n89_A 28 TRVTLNMEFE------SQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGT---TP-DPFAQQVTITG-YFGDVDRA 96 (376)
T ss_dssp TEEEEEEECC------GGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSS---SC-CTTTTEEEEEE-EHHHHHHH
T ss_pred CEEEEEEEEc------hhhhhhhccCCChHHHHHHHHHHhCCeEECCCCccccc---CC-cCCCCeEEEEc-CHHHHHHH
Confidence 4556677774 346778999999 999999999999999965432110 00 11112366665 67899999
Q ss_pred HHHHHHH
Q 008318 285 KRLAENL 291 (570)
Q Consensus 285 k~LiEnL 291 (570)
|+.+.+|
T Consensus 97 R~~I~~l 103 (376)
T 3n89_A 97 RMLMRRN 103 (376)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9999886
No 46
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.10 E-value=0.0034 Score=61.00 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCC----HHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNN----PKSLEEAK 285 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~----~e~v~kAk 285 (570)
..+|.||-+ -+|.|||++|.+++.|+++|||+|.|--. .=.|.|.+.+ ++.+++|+
T Consensus 35 i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~--------------~g~V~I~~~~~t~d~~~i~kA~ 94 (219)
T 2e3u_A 35 EEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSE--------------TGEVWITSTKETEDPLAVWKAR 94 (219)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTT--------------TCEEEEEECTTCCSHHHHHHHH
T ss_pred EEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcC--------------CCEEEEecCCCCCCHHHHHHHH
Confidence 346777643 58899999999999999999999998521 1246777766 99999999
Q ss_pred HHHHHHHH
Q 008318 286 RLAENLLD 293 (570)
Q Consensus 286 ~LiEnLL~ 293 (570)
++|+.|..
T Consensus 95 ~~I~~i~r 102 (219)
T 2e3u_A 95 DIVLAIGR 102 (219)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999873
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.62 E-value=0.0065 Score=54.88 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=46.6
Q ss_pred ceeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q 008318 209 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~Li 288 (570)
+++++.||-+ ++|.+||++|.+++.|++|+| |.|--- ++++--+.+.+..++.+.+|+.|+
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~~-----------~~~~~~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAIDL-----------DEDTCTFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEEE-----------ETTTTEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEecc-----------CCCchheeeccCCHHHHHHHHHhh
Confidence 4567777533 699999999999999999999 443211 234556788899999999998754
No 48
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.66 E-value=0.11 Score=42.42 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+... .++...-.+.|.|.. ..+++|+.
T Consensus 7 ~~~~i~Vp~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 68 (82)
T 1zzk_A 7 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ---------DQIQNAQY 68 (82)
T ss_dssp EEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--hcCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCH---------HHHHHHHH
Confidence 4667777665 48888876 89999999999999877531 112222457888953 47999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|++++++.
T Consensus 69 ~I~~~i~~~ 77 (82)
T 1zzk_A 69 LLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998763
No 49
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.59 E-value=0.1 Score=42.84 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=50.5
Q ss_pred EEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCC-CCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 105 ~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk-~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
..+|.|..- .++.++-+ |+|+++|+++|||.|.+.. .+. ....++. +.|.| +. ..+++|+.
T Consensus 15 ~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~----~~~~~~~~er~--v~I~G-~~--------~~v~~A~~ 77 (85)
T 2opv_A 15 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQ----DGSQNTNVDKP--LRIIG-DP--------YKVQQACE 77 (85)
T ss_dssp EEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECS----SSCSSTTSCEE--EEEEE-CH--------HHHHHHHH
T ss_pred EEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcC----CCCCCCCCceE--EEEEe-CH--------HHHHHHHH
Confidence 557888754 57888866 9999999999999987743 111 1234454 56778 43 47999999
Q ss_pred HHHHHHHc
Q 008318 183 MVEEMLKQ 190 (570)
Q Consensus 183 eIeEILKE 190 (570)
+|++++++
T Consensus 78 ~I~~i~~e 85 (85)
T 2opv_A 78 MVMDILRE 85 (85)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99999864
No 50
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=93.87 E-value=0.075 Score=42.61 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- .++.++-+ |.++++|++.|||.|.+... .++..--.+.|.|.. ..+++|+.
T Consensus 5 ~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 66 (76)
T 2p2r_A 5 TSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP-------VEGSTDRQVTITGSA---------ASISLAQY 66 (76)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC-------CCCCCeEEEEEEeCH---------HHHHHHHH
Confidence 3456666554 47778866 89999999999999987541 122223356788863 47999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|.+++.++
T Consensus 67 ~I~~~i~~E 75 (76)
T 2p2r_A 67 LINVRLSSE 75 (76)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHcc
Confidence 999998875
No 51
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=93.83 E-value=0.11 Score=41.47 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=49.2
Q ss_pred EEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008318 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (570)
Q Consensus 105 ~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aiae 183 (570)
..+|.|..- .++.++-+ |.++++|++.|||.|.+... +...++..--.+.|.|.. ..+++|..+
T Consensus 4 ~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~---------~~v~~A~~~ 68 (76)
T 1dtj_A 4 LVEMAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYL 68 (76)
T ss_dssp EEEEEEETT--THHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH---------HHHHHHHHH
T ss_pred EEEEEEChH--HcceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH---------HHHHHHHHH
Confidence 345666554 46778866 89999999999999877431 111223334567888864 479999999
Q ss_pred HHHHHHcC
Q 008318 184 VEEMLKQG 191 (570)
Q Consensus 184 IeEILKE~ 191 (570)
|.+++.++
T Consensus 69 I~~~i~ee 76 (76)
T 1dtj_A 69 ISQRVTYE 76 (76)
T ss_dssp HHHHCC--
T ss_pred HHHHHhcC
Confidence 99987653
No 52
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=93.71 E-value=0.085 Score=42.97 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=50.3
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+... .++..--.+.|.|.. ..+++|+.
T Consensus 6 ~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~---------~~v~~A~~ 67 (82)
T 1wvn_A 6 TTHELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSA---------ASISLAQY 67 (82)
T ss_dssp EEEEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEchH--hccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCH---------HHHHHHHH
Confidence 3557777655 47888866 89999999999999887542 122223356778865 37999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|.+++.++
T Consensus 68 ~I~~~i~~~ 76 (82)
T 1wvn_A 68 LINARLSSE 76 (82)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhh
Confidence 999998776
No 53
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.70 E-value=0.061 Score=49.73 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=52.1
Q ss_pred CCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 008318 222 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGA 301 (570)
Q Consensus 222 ~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~eEy~a 301 (570)
+-.+++.|+||+|+.|++||..|++.|+|.=-.| ..---|.|-|... .=.+||.|+++|.+--++..-.
T Consensus 63 E~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s----------~g~tEVtIfG~~~-~Q~rak~MI~sLA~~hr~~~~~ 131 (140)
T 3v69_A 63 EPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP----------ERRAEIWIFGPPP-FRRDVDRMLTDLAHYCRMKLME 131 (140)
T ss_dssp CGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT----------TSCEEEEEESCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcccCCCcCccchHHhhcceeEEEeccCC----------CCcEEEEEECCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999972212 2235577776544 4457889999999887776543
No 54
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.60 E-value=0.13 Score=44.36 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred EEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 008318 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (570)
Q Consensus 106 ~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeI 184 (570)
.+|.|..- .++.+|-| |+++++|+++|||.|.+...-.+ ..+..--.+.|.|.. +.|++|+.+|
T Consensus 9 ~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~~---------e~v~~A~~~I 73 (107)
T 2hh2_A 9 MTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGSP---------QQIDHAKQLI 73 (107)
T ss_dssp EEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESCH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECCH---------HHHHHHHHHH
Confidence 36666554 57888866 89999999999999987542111 112223456888843 4799999999
Q ss_pred HHHHHcCCC
Q 008318 185 EEMLKQGHA 193 (570)
Q Consensus 185 eEILKE~P~ 193 (570)
+++|.+...
T Consensus 74 ~~~i~e~~~ 82 (107)
T 2hh2_A 74 EEKIEGPLC 82 (107)
T ss_dssp HHHSCSCCC
T ss_pred HHHHhcccc
Confidence 999988653
No 55
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.47 E-value=0.041 Score=62.02 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=31.6
Q ss_pred eeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008318 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRV 304 (570)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~eEy~a~r~ 304 (570)
.+|.+|||+|.++|.|+.+||++|-|-+.| .|+|++.+.+.+++|+++++.|.+. .++.
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG---------------~v~Is~~~~~~~~~a~~~i~~i~~p--~~~~---- 666 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDDG---------------TIYIGAADGPAAEAARATINGIANP--TSPE---- 666 (757)
T ss_dssp -------------CTTCCCCCSCC-----------------------CCCBSSHHHHCC---------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCCc---------------eEEEecCCHHHHHHHHHHHHHhcch--hhcc----
Confidence 368899999999999999999999776532 4667788888889998888887632 1111
Q ss_pred cccccccCCCCccccccccccccccccCCccccceecccccc
Q 008318 305 SSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 346 (570)
Q Consensus 305 ~~~k~y~avpppqQ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 346 (570)
..+.|-. -+.++..+|..-.+.. ..-||.|--++
T Consensus 667 -vG~i~~G------~V~~i~~fGaFV~l~~-g~eGLvHiSel 700 (757)
T 1e3p_A 667 -VGERILG------SVVKTTTFGAFVSLLP-GKDGLLHISQI 700 (757)
T ss_dssp -------C------BEEECC-CSCEECCC----CCCCC----
T ss_pred -cccEEEE------EEEEccccEEEEEEcC-CcEEEEEhHHh
Confidence 1222211 2556677774433322 25566665544
No 56
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.38 E-value=0.13 Score=43.10 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=51.8
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- .++.++-| |+++++|+++|||.|.+...-.+ ....++ .+.|.|.. ..|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r--~v~I~G~~---------~~v~~A~~ 78 (94)
T 1x4m_A 15 AVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADK--PLRITGDP---------YKVQQAKE 78 (94)
T ss_dssp EEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCE--EEEEEECT---------TTHHHHHH
T ss_pred EEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCce--EEEEEeCH---------HHHHHHHH
Confidence 4668888654 57888866 99999999999999876321110 112344 45778843 37999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|++++++.
T Consensus 79 ~I~~~i~~~ 87 (94)
T 1x4m_A 79 MVLELIRDQ 87 (94)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHhcc
Confidence 999999874
No 57
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.27 E-value=0.023 Score=63.64 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=0.0
Q ss_pred eeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Q 008318 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293 (570)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~ 293 (570)
.++.+|||+|.+++.|..+||++|-|.+.| .++|++.+.+.+++|+++++.|+.
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg---------------~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDDG---------------TVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCCc---------------cEEEecCCHHHHHHHHHHHHHHhh
Confidence 367899999999999999999999777542 477888888999999999888864
No 58
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.13 E-value=0.21 Score=42.58 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=53.8
Q ss_pred CceeEEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHH
Q 008318 100 DELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVD 178 (570)
Q Consensus 100 de~~f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd 178 (570)
+......+|.|..- .++.++-+ |.++++|+++|||.|.+...- ++ ....+ -.+.|.|..+ .++
T Consensus 11 ~~ap~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~--~~-~~~~~--~~V~I~G~~~---------~v~ 74 (104)
T 1we8_A 11 ENTPVFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCDKES--EG-TLLLS--RLIKISGTQK---------EVA 74 (104)
T ss_dssp SSCEEEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEECCSS--CC-SSSSE--EEEEEEEEHH---------HHH
T ss_pred CCCCEEEEEEEChh--heeeeECCCCHHHHHHHHHHCCEEEEecCC--CC-CCCCc--ceEEEEcCHH---------HHH
Confidence 33445667888654 47888866 999999999999998774321 00 01123 3467788753 689
Q ss_pred HHHHHHHHHHHcCC
Q 008318 179 HAAAMVEEMLKQGH 192 (570)
Q Consensus 179 ~AiaeIeEILKE~P 192 (570)
+|+.+|++++.+++
T Consensus 75 ~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 75 AAKHLILEKVSEDE 88 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCh
Confidence 99999999998753
No 59
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=93.02 E-value=0.13 Score=42.74 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=51.2
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+... .++..--.+.|.|.. +.+++|+.
T Consensus 14 ~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~~~~~~~v~I~G~~---------e~v~~A~~ 75 (89)
T 1j5k_A 14 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ---------DQIQNAQY 75 (89)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CSSSSEEEEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-------CCCCCccEEEEEcCH---------HHHHHHHH
Confidence 5667777554 47888866 89999999999999887531 112222356788863 47999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|++++++.
T Consensus 76 ~I~~~i~e~ 84 (89)
T 1j5k_A 76 LLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998874
No 60
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=92.84 E-value=0.14 Score=44.36 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=50.2
Q ss_pred EEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHH
Q 008318 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 184 (570)
Q Consensus 106 ~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeI 184 (570)
.+|.|..- .++.++-| |+++++|+++|||.|.+.. .. +...-..+.|+|.. +.+++|+.+|
T Consensus 13 ~~i~Ip~~--~iG~IIGkgG~~Ik~I~~~TGakI~I~~-----~~--~~~~er~V~I~G~~---------e~v~~A~~~I 74 (106)
T 2hh3_A 13 IDVPVPRH--SVGVVIGRSGEMIKKIQNDAGVRIQFKQ-----DD--GTGPEKIAHIMGPP---------DRCEHAARII 74 (106)
T ss_dssp EEEEEETT--THHHHHTTTTHHHHHHHHHHTCEEEECS-----SC--SSSSEEEEEEESSH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHHCcEEEEec-----CC--CCCceeEEEEEeCH---------HHHHHHHHHH
Confidence 36777544 37888866 9999999999999988743 11 11222356778863 4799999999
Q ss_pred HHHHHcCC
Q 008318 185 EEMLKQGH 192 (570)
Q Consensus 185 eEILKE~P 192 (570)
++++.+..
T Consensus 75 ~~ii~~~~ 82 (106)
T 2hh3_A 75 NDLLQSLR 82 (106)
T ss_dssp HHHHHHHC
T ss_pred HHHHhccc
Confidence 99998753
No 61
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.73 E-value=0.21 Score=41.90 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=51.8
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- ..|+++-+ |.++.+|+++||+.|..- +.. +.+ -.+.|.|. . ..+++|+.
T Consensus 17 ~t~~i~Ip~~--~ig~IIG~gG~~Ik~I~~etg~~I~i~-----~~~--~~~--~~V~I~G~-~--------e~v~~A~~ 76 (94)
T 2cte_A 17 ASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQIP-----RPD--DPS--NQIKITGT-K--------EGIEKARH 76 (94)
T ss_dssp EEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBCC-----CTT--SSC--CEEEEEEC-H--------HHHHHHHH
T ss_pred eEEEEEEChH--HeeeeECCCChhHHHHHHHHCCEEEeC-----CCC--CCC--CeEEEEEC-H--------HHHHHHHH
Confidence 4678888866 58999977 799999999999998652 211 112 26788897 3 47999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|++++.+.
T Consensus 77 ~I~~i~~~~ 85 (94)
T 2cte_A 77 EVLLISAEQ 85 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998764
No 62
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.64 E-value=0.19 Score=41.89 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|.+ ..+++++-| |+|+++|+++|||.|.+-. . +.++ .+.|+|..+ .+++|+.
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~---~~~~--~v~ItG~~e---------~v~~A~~ 68 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R---DKEP--VFAVTGMPE---------NVDRARE 68 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S---SSCC--EEEEEECTT---------THHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C---CCCC--eEEEEcCHH---------HHHHHHH
Confidence 466788877 468999966 9999999999999987632 1 1233 377888764 7999999
Q ss_pred HHHHHHHcC
Q 008318 183 MVEEMLKQG 191 (570)
Q Consensus 183 eIeEILKE~ 191 (570)
+|.+++...
T Consensus 69 ~I~~~i~~r 77 (83)
T 2dgr_A 69 EIEAHITLR 77 (83)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 999987653
No 63
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=92.27 E-value=0.19 Score=40.13 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=48.8
Q ss_pred EEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008318 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (570)
Q Consensus 105 ~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aiae 183 (570)
..+|.|+.- ..|.++-+ |.++.+|+++|||.|.. ++. ++..-.+.|.|.. +.+++|+.+
T Consensus 6 ~~~i~I~~~--~ig~iIG~gG~~I~~I~e~tg~~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~~~ 65 (71)
T 1vig_A 6 YVEINIDHK--FHRHLIGKSGANINRIKDQYKVSVRI-----PPD----SEKSNLIRIEGDP---------QGVQQAKRE 65 (71)
T ss_dssp EEEEEECSS--HHHHHTCSSCCHHHHHHHHTCCEEEC-----CCC----CSSSEEEEEEESS---------HHHHHHHHH
T ss_pred EEEEEECHH--HhhhhcCCCCccHHHHHHHHCCEEEE-----CCC----CCcccEEEEEcCH---------HHHHHHHHH
Confidence 567888876 58999966 99999999999999854 221 2233467889984 479999999
Q ss_pred HHHHH
Q 008318 184 VEEML 188 (570)
Q Consensus 184 IeEIL 188 (570)
|.+++
T Consensus 66 I~~i~ 70 (71)
T 1vig_A 66 LLELA 70 (71)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 98874
No 64
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=92.24 E-value=0.31 Score=40.67 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=52.9
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+...- ++..--.+.|.|.. +.|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~---------e~v~~A~~ 76 (92)
T 1x4n_A 15 MTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP---------ESVQSAKR 76 (92)
T ss_dssp EEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH---------HHHHHHHH
Confidence 4667777654 47888866 899999999999998775421 12233456788863 47999999
Q ss_pred HHHHHHHcCC
Q 008318 183 MVEEMLKQGH 192 (570)
Q Consensus 183 eIeEILKE~P 192 (570)
+|++++.+..
T Consensus 77 ~I~~~i~~~~ 86 (92)
T 1x4n_A 77 LLDQIVEKGR 86 (92)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999998864
No 65
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=91.61 E-value=0.38 Score=38.53 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=48.0
Q ss_pred EEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHH
Q 008318 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 183 (570)
Q Consensus 105 ~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aiae 183 (570)
.-+|.|..- .++.++-+ |+++++|+++|||.|.+-.. + ..++ .+.|.|.. ..+++|+.+
T Consensus 6 ~~~i~ip~~--~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~---~~er--~v~I~G~~---------~~v~~A~~~ 65 (73)
T 2axy_A 6 TIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG----N---CPER--IITLAGPT---------NAIFKAFAM 65 (73)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECSS----C---CSEE--EEEEEECH---------HHHHHHHHH
T ss_pred EEEEEEChh--HeeeEECCCCHHHHHHHHHHCCEEEEecC----C---CCcE--EEEEEeCH---------HHHHHHHHH
Confidence 445566543 46777766 89999999999999876431 1 1233 46778873 479999999
Q ss_pred HHHHHHcC
Q 008318 184 VEEMLKQG 191 (570)
Q Consensus 184 IeEILKE~ 191 (570)
|.++|.++
T Consensus 66 I~~~l~ed 73 (73)
T 2axy_A 66 IIDKLEED 73 (73)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhcC
Confidence 99999874
No 66
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.00 E-value=0.28 Score=42.21 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=50.4
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|+.- ..|.++-+ |.++.+|+++|||.|.. ++. ++..-.+.|.|.. ..+++|+.
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I-----~~~----g~~~~~V~I~G~~---------e~v~~A~~ 76 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHV-----PAP----ELQSDIIAITGLA---------ANLDRAKA 76 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEEC-----CCT----TTTCCEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEe-----cCC----CCCcceEEEEcCH---------HHHHHHHH
Confidence 5668888765 58899876 99999999999999865 221 1122367888974 37899999
Q ss_pred HHHHHHHc
Q 008318 183 MVEEMLKQ 190 (570)
Q Consensus 183 eIeEILKE 190 (570)
+|+.++++
T Consensus 77 ~I~~i~~e 84 (104)
T 2ctk_A 77 GLLERVKE 84 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998765
No 67
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=90.89 E-value=0.45 Score=39.09 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=48.4
Q ss_pred EEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008318 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIe 185 (570)
+|.|..- .++.++-+ |.++.+|++.|||.|.+... +...++..--.+.|.|.. ..+++|..+|.
T Consensus 6 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~g~~~r~v~I~G~~---------~~v~~A~~~I~ 70 (87)
T 1ec6_A 6 EIAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYLIS 70 (87)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCT----TCBSTTSCEEEEEEESSH---------HHHHHHHHHHH
T ss_pred EEEEChH--HcCeeECCCcHhHHHHHHHhCCEEEEccC----CCCCCCCCceEEEEEcCH---------HHHHHHHHHHH
Confidence 4455433 46777766 89999999999999877431 111123334556888963 47999999999
Q ss_pred HHHHcC
Q 008318 186 EMLKQG 191 (570)
Q Consensus 186 EILKE~ 191 (570)
+++.+.
T Consensus 71 ~~i~~~ 76 (87)
T 1ec6_A 71 QRVTYE 76 (87)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998764
No 68
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.20 E-value=0.31 Score=46.62 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=52.1
Q ss_pred eeEEEecCCCCCCCceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEE----cCCHHHHHHHH
Q 008318 210 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLS----SNNPKSLEEAK 285 (570)
Q Consensus 210 eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Is----a~~~e~v~kAk 285 (570)
+.+|.||-+ -+|.|||.+|.+++.|++++||+|.|-.+ +- -+.|. ..|+..+.+|+
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~-------------~~-~V~i~t~~~t~dp~~i~KA~ 64 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTE-------------NS-MVIVEPEAEGIPPVNLMKAA 64 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETT-------------TT-EEEEEESSTTSCHHHHHHHH
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcC-------------CC-eEEEEeCCCCCCHHHHHHHH
Confidence 356766533 48899999999999999999999999643 11 22333 47889999999
Q ss_pred HHHHHHHHHHHHH
Q 008318 286 RLAENLLDTISAE 298 (570)
Q Consensus 286 ~LiEnLL~tV~eE 298 (570)
+|+..+...+.-+
T Consensus 65 dlI~ai~rgf~~e 77 (191)
T 1tua_A 65 EVVKAISLGFPPE 77 (191)
T ss_dssp HHHHHHHHTCCHH
T ss_pred HHHHHHHcCCCHH
Confidence 9998877655443
No 69
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.70 E-value=0.49 Score=40.03 Aligned_cols=68 Identities=6% Similarity=0.068 Sum_probs=50.8
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
+..+|.|+.- ..|.++-+ |.++.+|+++||+.|.. |+. .....-.+.|.|.. +.+++|+.
T Consensus 17 vt~~i~Ip~~--~ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~---g~~~~~~V~I~G~~---------e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRF-----PQS---GAPDPNCVTVTGLP---------ENVEEAID 77 (95)
T ss_dssp CCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEEC-----CCT---TCSCTTEEEEESCH---------HHHHHHHH
T ss_pred EEEEEEECHH--HccccCCCCcchHHHHHHHHCCeEEe-----cCC---CCCCCcEEEEEcCH---------HHHHHHHH
Confidence 4668888876 58888866 99999999999999866 221 11223456788874 37999999
Q ss_pred HHHHHHHc
Q 008318 183 MVEEMLKQ 190 (570)
Q Consensus 183 eIeEILKE 190 (570)
+|+.++++
T Consensus 78 ~I~~i~~e 85 (95)
T 2ctm_A 78 HILNLEEE 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 70
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.55 E-value=0.95 Score=38.36 Aligned_cols=70 Identities=4% Similarity=0.003 Sum_probs=51.0
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
|...|.|..- ..|.++-+ |.++.+|+++|||.|.+ ++... +++..-.+.|.|. . +.+++|+.
T Consensus 17 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~etg~~I~i-----~~~g~-~~~~~~~V~I~G~-~--------e~v~~A~~ 79 (97)
T 2ctl_A 17 FKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQF-----PDKDD-GNQPQDQITITGY-E--------KNTEAARD 79 (97)
T ss_dssp CEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTT-CSSCSSEEEEESC-H--------HHHHHHHH
T ss_pred eeEEEEECHH--HhhhcCCCCchhHHHHHHHHCCEEEe-----cCCCC-CCCCccEEEEEeC-H--------HHHHHHHH
Confidence 5668888765 58889977 99999999999999865 22211 1123345678886 3 47899999
Q ss_pred HHHHHHHc
Q 008318 183 MVEEMLKQ 190 (570)
Q Consensus 183 eIeEILKE 190 (570)
+|..++++
T Consensus 80 ~I~~iv~e 87 (97)
T 2ctl_A 80 AILRIVGE 87 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 71
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=81.18 E-value=0.97 Score=41.02 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=45.3
Q ss_pred CCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 008318 149 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 200 (570)
Q Consensus 149 k~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIeEILKE~P~~~p~~~~ 200 (570)
..+++.+|-|......++++|.+.|.++.++...+|++||+..+.|+++.++
T Consensus 70 ~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 70 DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp SSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred cCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 4788999999998888888888888888999999999999999999987654
No 72
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=80.26 E-value=3.1 Score=35.27 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=49.8
Q ss_pred EEEEEeCCCCcccceeeec-hhhHHHHHhHh-CCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHH
Q 008318 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 182 (570)
Q Consensus 105 ~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~T-GA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Aia 182 (570)
...|.|+-- .-|+++-+ |.++.+|+++| |+.|.. |. ++...-.+.|.|.. +.|++|+.
T Consensus 18 t~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~----~g~~~~~V~I~G~~---------~~v~~A~~ 77 (95)
T 2ctj_A 18 EVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PV----EGSGSDTVVIRGPS---------SDVEKAKK 77 (95)
T ss_dssp CEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC----TTTTCCEEEEESCH---------HHHHHHHH
T ss_pred EEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CC----CCCCcceEEEEcCH---------HHHHHHHH
Confidence 557777755 57888866 79999999999 898843 32 22333467888975 37999999
Q ss_pred HHHHHHHc
Q 008318 183 MVEEMLKQ 190 (570)
Q Consensus 183 eIeEILKE 190 (570)
+|++|+.+
T Consensus 78 ~I~~iv~e 85 (95)
T 2ctj_A 78 QLLHLAEE 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999876
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=75.94 E-value=4.7 Score=34.51 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=48.7
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhH-hCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~-TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Ai 181 (570)
++.+|+|.-- -.|+++-+ |+++.+|.+. +++.| .+|.+ +. -+.|+|.. ..|++|.
T Consensus 27 ~t~~i~vp~~--~h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~~-----~~--~ItI~G~~---------~~V~~a~ 83 (102)
T 2ctf_A 27 TVSSVAAPSW--LHRFIIGKKGQNLAKITQQMPKVHI-----EFTEG-----ED--KITLEGPT---------EDVSVAQ 83 (102)
T ss_dssp EEEEEECCST--THHHHHTTTTCHHHHHHHHCSSSEE-----EECSS-----SC--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEeCHH--HHhhhcCCCCccHHHHHHHcCCcEE-----EeCCC-----CC--EEEEECCH---------HHHHHHH
Confidence 4778888754 58999965 9999999996 57766 25542 22 57899985 4799999
Q ss_pred HHHHHHHHc
Q 008318 182 AMVEEMLKQ 190 (570)
Q Consensus 182 aeIeEILKE 190 (570)
.+|+.++++
T Consensus 84 ~~I~~~v~e 92 (102)
T 2ctf_A 84 EQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 74
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=49.58 E-value=50 Score=28.46 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=33.0
Q ss_pred hhHHHHHhhh-CcEEEEeeccCcCCCCCCCCCCCC-cEEEEEcCCHHHHHHHHHHHHHHHHHHHHH
Q 008318 235 QYINHIMNET-GATVLLRGRGSGNSEGLQGEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 298 (570)
Q Consensus 235 stlK~Iq~ET-GAKI~IRGRGSg~~E~~~gEsdEP-LHV~Isa~~~e~v~kAk~LiEnLL~tV~eE 298 (570)
..+..|+-+. +..|.||--|. || ++|++++.+.+ .|.++++.+.+.|.+.
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-----------EP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-----------EDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-----------SSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-----------ccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 3445555543 45888887554 55 99999999865 5556666666666554
No 75
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=47.37 E-value=11 Score=32.23 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCcccceeeec-hhhHHHHHhHhCCe-EeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHH
Q 008318 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 181 (570)
Q Consensus 104 f~~EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~-VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~Ai 181 (570)
|..+|.|+-= ..|..+-+ |.++.+|+++||+. |..-- ++. .+.|.|.+. .++++|+
T Consensus 15 ~i~~i~I~~d--kIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~--------ea~~~A~ 72 (91)
T 2cpq_A 15 FHEEFVVRED--LMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA--------DAVKKAR 72 (91)
T ss_dssp EEEEEECCHH--HHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH--------HHHHHHH
T ss_pred eEEEEEEChH--HhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH--------HHHHHHH
Confidence 5668888743 57888865 99999999999997 87731 112 356788765 5889998
Q ss_pred HHHHHH
Q 008318 182 AMVEEM 187 (570)
Q Consensus 182 aeIeEI 187 (570)
.+|+.+
T Consensus 73 ~~I~~i 78 (91)
T 2cpq_A 73 GFLEFV 78 (91)
T ss_dssp HHHSCC
T ss_pred HHHHhh
Confidence 888766
No 76
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=42.82 E-value=26 Score=33.85 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=37.3
Q ss_pred eeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHH
Q 008318 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAK 285 (570)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk 285 (570)
.+.+++|++|..++.|.+.++|+|.| |+ .-.++|.+.+.+....+.
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~v-G~--------------NG~IWi~~~~~~~~~~~~ 203 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFV-AR--------------NGRIHLECPNEDLEAIAV 203 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEE-ET--------------TTEEEEECSCHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEE-eC--------------CCEEEEecCCHHHHHHHH
Confidence 57789999999999999899999988 43 247999999987655443
No 77
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=34.44 E-value=25 Score=39.06 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=41.3
Q ss_pred EEEeCCCCcccceeeec-hhhHHHHHhHhCCeEeeecceeCCCCCCCCCCCeEEEEeeccchhhHHHHHHHHHHHHHHHH
Q 008318 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~TQ~eIqe~TGA~VtTRGrYyPPgk~~~gEpPLYL~Ieg~Te~kdt~ERi~aVd~AiaeIe 185 (570)
.|.|+-- +.|-++-+ |.++++|+++||+.|.+-- +- -+.|.+.+. .++++|++.|+
T Consensus 570 ~~~I~~~--kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G--~V~I~~~~~--------~~~~~A~~~I~ 626 (630)
T 3u1k_A 570 TVQVPLS--KRAKFVGPGGYNLKKLQAETGVTISQVD-----------EE--TFSVFAPTP--------SAMHEARDFIT 626 (630)
T ss_dssp EEECCHH--HHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SS--EEEEEESSH--------HHHHHHHHHTT
T ss_pred EEEeChh--HhheeECCCChhHHHHHHHHCCEEEEcC-----------Cc--EEEEEeCCH--------HHHHHHHHHHH
Confidence 5556533 46777755 8999999999999986621 11 346788764 57899999998
Q ss_pred HHHH
Q 008318 186 EMLK 189 (570)
Q Consensus 186 EILK 189 (570)
.|++
T Consensus 627 ~i~~ 630 (630)
T 3u1k_A 627 EICK 630 (630)
T ss_dssp C---
T ss_pred HHhC
Confidence 8763
No 78
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=30.97 E-value=10 Score=34.77 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.6
Q ss_pred eeEEeCCCchhHHHHHhhhCcEEEEeec
Q 008318 226 AARIRGPNDQYINHIMNETGATVLLRGR 253 (570)
Q Consensus 226 vgrIIGP~GstlK~Iq~ETGAKI~IRGR 253 (570)
+|..||++|+.++.|++|.|-||-|---
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 8999999999999999999999977653
No 79
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.24 E-value=1.1e+02 Score=28.27 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=31.4
Q ss_pred EEeCCCchhHH-------HHHhhhCcEE--EEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHH
Q 008318 228 RIRGPNDQYIN-------HIMNETGATV--LLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEA 284 (570)
Q Consensus 228 rIIGP~GstlK-------~Iq~ETGAKI--~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kA 284 (570)
+|-|---+.-| ++.+|.+-.| +|-|.|||- |-+...++|.+.+++|
T Consensus 46 ~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgv-----------m~i~f~gddlea~eka 100 (170)
T 4hhu_A 46 VITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGV-----------MVIVFEGDDLEALEKA 100 (170)
T ss_dssp EEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCE-----------EEEEEECSCHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceE-----------EEEEEecCcHHHHHHH
Confidence 55555444444 4556667666 677888874 6777888888888887
No 80
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Pseudomonas aeruginosa}
Probab=27.54 E-value=64 Score=28.54 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=50.2
Q ss_pred eeeEEeCCC-chhHHHHHhhhCcEEEEeeccC-cCCCCCCC-----CCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Q 008318 225 IAARIRGPN-DQYINHIMNETGATVLLRGRGS-GNSEGLQG-----EVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 296 (570)
Q Consensus 225 fvgrIIGP~-GstlK~Iq~ETGAKI~IRGRGS-g~~E~~~g-----EsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~ 296 (570)
-.++|-..+ ..|+|+|.+.-+-|+-+...+. +.+.-..| ..++-|.|.|++.+.+.|...+..+.+.|+.+.
T Consensus 26 s~A~v~T~~asryl~qLc~H~~hK~~ve~d~~~g~i~fp~G~~~l~a~~~~L~i~v~A~d~e~L~~lk~VVa~HL~rFa 104 (118)
T 2jpi_A 26 STSHVRTESAARYVNRLCKHWGHKFEVELTPERGFIDFGDSNCELLAHPDHVLMILNSPDEDSLAHMQNVVADHLQRMA 104 (118)
T ss_dssp EEEEECCSSHHHHHHHHHHHTTTSSEEEECSSEEEEECSSSCEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHTS
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhhCCceEcCCceEEEeCCeEEEEEecCCeEEEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 445566655 4588999888877765543322 12222222 256779999999999999999999999888764
No 81
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.71 E-value=41 Score=32.50 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=32.6
Q ss_pred ceeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCH
Q 008318 224 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNP 278 (570)
Q Consensus 224 NfvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~ 278 (570)
+.+.+++|+++..++.|.+.++|.|.| |. .-.++|.+.+.
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~--------------NG~IWi~~~~~ 184 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ--------------NGLIWVNGDRR 184 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT--------------TSEEEEESCHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC--------------CcEEEEeCCch
Confidence 357789999999999999999999988 42 25788987655
No 82
>4did_B Inositol phosphate phosphatase SOPB; small GTPase, GTP binding, hydrolase-hydrolase complex; HET: GDP; 2.35A {Salmonella enterica subsp}
Probab=23.47 E-value=54 Score=30.62 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=47.6
Q ss_pred eeeEEeCCCchhHHHHHhhhCcEEEEeeccCcCCCCCCCCCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHH-hhccc
Q 008318 225 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE-CGASR 303 (570)
Q Consensus 225 fvgrIIGP~GstlK~Iq~ETGAKI~IRGRGSg~~E~~~gEsdEPLHV~Isa~~~e~v~kAk~LiEnLL~tV~eE-y~a~r 303 (570)
+.+..+|-...++++|.+.-.+- -+ ++|.| -++..++.+|+|..+||.-|..+ |+.+.
T Consensus 57 ~aa~~lGgd~~~l~sm~nql~~a--------k~------k~dR~-------AT~qE~~~aK~L~knLI~lIA~~l~~q~g 115 (152)
T 4did_B 57 VAATVLGKQDPVLTSMANQMELA--------KV------KADRP-------ATKQEEAAAKALKKNLIELIAARTQQQDG 115 (152)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHG--------GG------SCCCB-------CCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHH--------Hh------cccCc-------CchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566888899999998765421 01 23333 37889999999999999999988 88888
Q ss_pred ccccc
Q 008318 304 VSSCK 308 (570)
Q Consensus 304 ~~~~k 308 (570)
++.|+
T Consensus 116 ls~ke 120 (152)
T 4did_B 116 LPAKE 120 (152)
T ss_dssp CCHHH
T ss_pred cchHH
Confidence 87766
No 83
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=23.29 E-value=43 Score=26.96 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.3
Q ss_pred ccCCCCCcCCChHHHH
Q 008318 398 SGYEGIYPQATPLQQV 413 (570)
Q Consensus 398 ~gy~~iypqatplqqv 413 (570)
-|||+|+|+ |+.-++
T Consensus 43 vGyGdi~P~-t~~~r~ 57 (82)
T 3ldc_A 43 VGYGDYSPH-TPLGMY 57 (82)
T ss_dssp CCCCSSCCC-SHHHHH
T ss_pred cCCCCCCCC-CccHHH
Confidence 599999998 555544
No 84
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.72 E-value=82 Score=27.22 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.6
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH
Q 008318 269 LHLFLSSNNPKSLEEAKRLAEN 290 (570)
Q Consensus 269 LHV~Isa~~~e~v~kAk~LiEn 290 (570)
|+|+|.++|..-++.|++|+|.
T Consensus 3 lyvliisndkklieearkmaek 24 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEK 24 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHh
Confidence 7999999999999999999975
No 85
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=20.64 E-value=22 Score=34.74 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=27.1
Q ss_pred cceeEEEecCCCCCCCceeeEEeCCCchhHHHHH--------hhhCcEEEEe
Q 008318 208 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIM--------NETGATVLLR 251 (570)
Q Consensus 208 ~~eeKI~Ipvd~~P~FNfvgrIIGP~GstlK~Iq--------~ETGAKI~IR 251 (570)
.....|+|.-+. -.+.|||.+|..||+|. +..||||.|.
T Consensus 239 ~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 445556664332 35779999999999884 4578888764
Done!