Query 008319
Match_columns 570
No_of_seqs 215 out of 1754
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:18:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 1E-132 3E-137 1081.3 55.8 467 98-569 24-509 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 2E-132 5E-137 1079.0 55.7 472 96-569 35-513 (513)
3 PLN02623 pyruvate kinase 100.0 2E-131 4E-136 1080.6 59.2 518 51-570 64-581 (581)
4 PRK06247 pyruvate kinase; Prov 100.0 6E-130 1E-134 1054.8 55.4 468 97-570 3-472 (476)
5 PRK09206 pyruvate kinase; Prov 100.0 8E-130 2E-134 1054.4 55.9 465 98-568 1-470 (470)
6 PLN02461 Probable pyruvate kin 100.0 5E-129 1E-133 1053.5 54.7 466 96-569 18-511 (511)
7 COG0469 PykF Pyruvate kinase [ 100.0 4E-129 9E-134 1043.1 52.2 470 96-568 2-477 (477)
8 PRK06354 pyruvate kinase; Prov 100.0 2E-127 4E-132 1061.8 56.7 468 97-568 6-478 (590)
9 PLN02765 pyruvate kinase 100.0 5E-127 1E-131 1038.4 55.4 463 98-569 27-525 (526)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 1E-126 3E-131 1034.6 54.9 467 98-568 1-480 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 1E-124 2E-129 1016.2 54.4 452 97-550 2-458 (465)
12 PTZ00300 pyruvate kinase; Prov 100.0 1E-118 3E-123 963.7 53.1 441 125-569 1-454 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 3E-118 7E-123 971.6 53.3 465 99-565 1-473 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 2E-116 3E-121 940.7 41.7 485 74-568 3-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 7E-104 2E-108 831.2 28.7 338 98-436 1-345 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 2E-102 4E-107 815.5 38.0 331 100-435 2-334 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 2.2E-92 4.8E-97 772.4 37.0 342 84-433 124-597 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 9.1E-91 2E-95 754.4 36.5 341 85-433 119-480 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 6.9E-28 1.5E-32 216.8 15.2 115 451-567 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 2.9E-16 6.3E-21 159.2 10.0 135 262-410 66-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 3.1E-16 6.7E-21 159.6 9.9 136 262-411 73-242 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 1.3E-15 2.7E-20 155.9 10.2 133 264-410 74-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 4E-15 8.6E-20 147.1 11.0 136 261-410 70-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.5 2.1E-14 4.5E-19 145.7 9.2 132 265-410 69-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 9.3E-15 2E-19 145.1 3.9 134 263-405 67-218 (221)
26 TIGR01418 PEP_synth phosphoeno 99.2 6.2E-11 1.3E-15 137.6 13.3 150 263-431 609-782 (782)
27 TIGR01588 citE citrate lyase, 99.2 6.2E-11 1.3E-15 122.8 11.3 130 266-405 71-220 (288)
28 PRK06464 phosphoenolpyruvate s 99.2 9.8E-11 2.1E-15 136.0 12.8 151 264-433 617-791 (795)
29 TIGR01417 PTS_I_fam phosphoeno 99.1 4.4E-10 9.6E-15 126.3 11.3 133 263-406 366-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.0 1.6E-09 3.4E-14 122.0 10.1 133 263-406 367-526 (575)
31 COG2301 CitE Citrate lyase bet 98.6 9.8E-08 2.1E-12 98.5 8.1 132 266-405 66-212 (283)
32 cd00727 malate_synt_A Malate s 98.5 5.2E-06 1.1E-10 92.0 17.7 131 280-426 185-357 (511)
33 PRK09255 malate synthase; Vali 98.4 9E-06 2E-10 90.4 16.9 142 268-426 195-378 (531)
34 TIGR01344 malate_syn_A malate 98.4 7E-06 1.5E-10 90.8 15.8 117 282-405 187-345 (511)
35 cd00480 malate_synt Malate syn 98.3 3.6E-05 7.7E-10 85.9 19.0 139 280-426 184-357 (511)
36 PF02896 PEP-utilizers_C: PEP- 98.2 1.1E-05 2.4E-10 84.1 11.4 134 263-407 119-279 (293)
37 PLN02626 malate synthase 97.9 0.00029 6.3E-09 78.4 16.5 122 282-405 213-371 (551)
38 PRK11061 fused phosphoenolpyru 97.2 0.00096 2.1E-08 78.0 8.2 125 271-406 540-692 (748)
39 TIGR01828 pyru_phos_dikin pyru 96.8 0.0066 1.4E-07 72.0 11.2 135 262-407 669-851 (856)
40 COG1080 PtsA Phosphoenolpyruva 96.7 0.0072 1.6E-07 67.8 9.8 128 268-406 373-527 (574)
41 PRK08649 inosine 5-monophospha 96.3 0.043 9.2E-07 59.3 12.4 121 269-406 143-285 (368)
42 PRK09279 pyruvate phosphate di 96.0 0.03 6.5E-07 66.6 10.1 135 261-406 674-856 (879)
43 PF00478 IMPDH: IMP dehydrogen 96.0 0.11 2.3E-06 55.9 13.2 125 266-406 106-240 (352)
44 cd00381 IMPDH IMPDH: The catal 95.4 0.4 8.7E-06 51.0 15.0 123 267-405 93-225 (325)
45 TIGR02751 PEPCase_arch phospho 95.4 0.054 1.2E-06 60.5 8.5 91 280-370 122-247 (506)
46 PTZ00314 inosine-5'-monophosph 94.9 0.49 1.1E-05 53.2 14.6 124 266-406 239-373 (495)
47 TIGR01304 IMP_DH_rel_2 IMP deh 94.7 0.24 5.3E-06 53.6 11.0 120 271-406 146-284 (369)
48 PRK13655 phosphoenolpyruvate c 94.5 0.13 2.8E-06 57.4 8.4 93 278-370 119-239 (494)
49 PRK05096 guanosine 5'-monophos 94.3 0.73 1.6E-05 49.3 13.2 125 266-406 106-242 (346)
50 TIGR01305 GMP_reduct_1 guanosi 93.4 1.6 3.5E-05 46.7 13.8 126 266-406 105-241 (343)
51 TIGR01302 IMP_dehydrog inosine 93.3 1.6 3.5E-05 48.4 14.5 126 266-406 222-356 (450)
52 TIGR03151 enACPred_II putative 93.2 1.5 3.3E-05 46.3 13.3 114 269-406 76-190 (307)
53 PRK07807 inosine 5-monophospha 93.0 1.4 3.1E-05 49.3 13.5 129 264-406 223-359 (479)
54 PRK00009 phosphoenolpyruvate c 92.9 0.39 8.4E-06 57.6 9.1 93 279-371 485-605 (911)
55 PLN02274 inosine-5'-monophosph 92.8 1.6 3.4E-05 49.3 13.4 125 266-406 246-380 (505)
56 COG3605 PtsP Signal transducti 92.7 0.35 7.7E-06 54.7 8.0 133 281-430 559-718 (756)
57 PTZ00398 phosphoenolpyruvate c 92.6 0.5 1.1E-05 57.1 9.7 145 281-425 546-718 (974)
58 PRK08745 ribulose-phosphate 3- 92.4 5.6 0.00012 40.3 15.6 139 273-429 78-222 (223)
59 cd03174 DRE_TIM_metallolyase D 92.3 12 0.00026 37.6 18.1 157 264-430 15-189 (265)
60 PRK13125 trpA tryptophan synth 92.0 5.6 0.00012 40.4 15.2 115 272-406 93-214 (244)
61 PRK08883 ribulose-phosphate 3- 92.0 4.3 9.3E-05 40.9 14.1 137 272-428 73-217 (220)
62 PRK01130 N-acetylmannosamine-6 91.8 3.9 8.4E-05 40.6 13.6 136 269-426 77-219 (221)
63 PRK06843 inosine 5-monophospha 91.4 3.9 8.4E-05 45.0 14.0 125 266-406 151-285 (404)
64 COG0574 PpsA Phosphoenolpyruva 91.3 1.1 2.5E-05 52.7 10.5 112 283-406 597-723 (740)
65 cd04730 NPD_like 2-Nitropropan 91.2 4.3 9.4E-05 40.3 13.2 115 269-406 69-185 (236)
66 PRK09722 allulose-6-phosphate 91.0 11 0.00023 38.5 15.8 141 272-430 74-223 (229)
67 PRK02290 3-dehydroquinate synt 90.9 3.6 7.7E-05 44.1 12.7 204 267-500 13-264 (344)
68 PF01959 DHQS: 3-dehydroquinat 90.3 3.6 7.8E-05 44.3 12.2 198 270-500 15-274 (354)
69 cd00429 RPE Ribulose-5-phospha 90.2 6.2 0.00013 38.2 13.1 133 272-422 72-210 (211)
70 TIGR01949 AroFGH_arch predicte 89.8 7.1 0.00015 39.9 13.7 66 273-341 162-231 (258)
71 PRK07107 inosine 5-monophospha 89.5 4 8.6E-05 46.1 12.4 120 270-406 244-381 (502)
72 cd00958 DhnA Class I fructose- 89.1 9.4 0.0002 38.1 13.7 73 265-342 140-219 (235)
73 PRK05581 ribulose-phosphate 3- 89.0 15 0.00033 36.0 14.9 138 272-425 76-217 (220)
74 TIGR01306 GMP_reduct_2 guanosi 87.9 14 0.0003 39.5 14.5 126 265-406 91-227 (321)
75 cd04726 KGPDC_HPS 3-Keto-L-gul 87.8 15 0.00033 35.5 13.9 130 272-420 69-200 (202)
76 PRK05458 guanosine 5'-monophos 87.8 13 0.00028 39.8 14.3 126 266-406 95-230 (326)
77 KOG2550 IMP dehydrogenase/GMP 87.4 2 4.2E-05 47.0 7.8 124 267-406 250-383 (503)
78 TIGR01163 rpe ribulose-phospha 87.3 18 0.00038 35.1 14.1 135 271-421 70-208 (210)
79 cd07944 DRE_TIM_HOA_like 4-hyd 87.2 39 0.00085 34.9 19.9 157 252-430 9-181 (266)
80 PTZ00170 D-ribulose-5-phosphat 87.0 13 0.00028 37.5 13.2 139 271-428 79-223 (228)
81 cd00945 Aldolase_Class_I Class 87.0 20 0.00043 33.9 14.0 119 271-406 17-149 (201)
82 cd04740 DHOD_1B_like Dihydroor 86.6 37 0.0008 35.2 16.7 147 267-430 101-282 (296)
83 PRK05567 inosine 5'-monophosph 86.2 13 0.00028 41.8 14.0 123 268-406 228-360 (486)
84 PF14010 PEPcase_2: Phosphoeno 86.0 0.86 1.9E-05 50.9 4.4 144 279-430 119-302 (491)
85 cd02940 DHPD_FMN Dihydropyrimi 85.8 18 0.00039 37.8 14.0 127 267-408 112-283 (299)
86 cd00640 Trp-synth-beta_II Tryp 85.7 36 0.00078 34.0 15.7 118 355-496 63-188 (244)
87 PF01791 DeoC: DeoC/LacD famil 85.6 4.3 9.3E-05 40.8 8.9 152 263-430 13-189 (236)
88 PRK13813 orotidine 5'-phosphat 85.2 6.3 0.00014 38.9 9.8 131 274-428 74-214 (215)
89 COG2352 Ppc Phosphoenolpyruvat 84.8 2 4.4E-05 50.5 6.7 121 247-369 447-600 (910)
90 cd00452 KDPG_aldolase KDPG and 84.6 26 0.00055 34.1 13.6 104 271-407 20-125 (190)
91 PLN02334 ribulose-phosphate 3- 83.9 35 0.00076 34.2 14.6 139 273-429 81-225 (229)
92 cd04724 Tryptophan_synthase_al 83.9 31 0.00068 35.0 14.3 144 261-426 9-183 (242)
93 TIGR01303 IMP_DH_rel_1 IMP deh 83.8 10 0.00022 42.6 11.6 128 264-407 221-358 (475)
94 CHL00200 trpA tryptophan synth 83.6 29 0.00062 36.0 14.1 120 271-406 110-231 (263)
95 cd00331 IGPS Indole-3-glycerol 83.6 27 0.00059 34.4 13.5 127 272-421 86-216 (217)
96 PRK08227 autoinducer 2 aldolas 83.5 7.9 0.00017 40.2 9.9 135 272-428 99-248 (264)
97 PF00311 PEPcase: Phosphoenolp 83.5 2.2 4.8E-05 50.7 6.5 91 281-371 364-482 (794)
98 PRK15452 putative protease; Pr 83.4 4.5 9.8E-05 45.0 8.6 91 268-374 11-119 (443)
99 cd04722 TIM_phosphate_binding 83.2 27 0.00058 32.5 12.7 116 273-406 77-199 (200)
100 PRK02048 4-hydroxy-3-methylbut 83.1 21 0.00046 41.1 13.7 157 268-428 42-225 (611)
101 PRK13307 bifunctional formalde 83.0 19 0.00042 39.5 13.1 132 273-426 243-378 (391)
102 PRK08091 ribulose-phosphate 3- 82.7 49 0.0011 33.7 15.0 134 272-425 83-226 (228)
103 PRK08318 dihydropyrimidine deh 82.7 29 0.00063 38.0 14.5 124 268-406 113-282 (420)
104 TIGR02090 LEU1_arch isopropylm 82.3 78 0.0017 34.2 17.9 165 250-429 9-183 (363)
105 PRK07565 dihydroorotate dehydr 82.3 19 0.00042 38.3 12.6 142 273-433 120-290 (334)
106 cd04729 NanE N-acetylmannosami 82.1 19 0.00042 35.6 11.8 118 269-406 81-206 (219)
107 cd02810 DHOD_DHPD_FMN Dihydroo 82.1 34 0.00075 35.2 14.1 127 267-406 110-272 (289)
108 PTZ00005 phosphoglycerate kina 82.0 13 0.00028 41.1 11.3 113 313-437 215-339 (417)
109 PRK00915 2-isopropylmalate syn 81.9 76 0.0016 36.1 17.7 156 264-429 22-191 (513)
110 cd07945 DRE_TIM_CMS Leptospira 81.9 70 0.0015 33.4 18.7 228 250-511 6-250 (280)
111 PRK04302 triosephosphate isome 81.3 31 0.00066 34.5 13.0 136 273-423 78-219 (223)
112 PF00478 IMPDH: IMP dehydrogen 81.1 3.5 7.6E-05 44.5 6.4 51 99-149 95-145 (352)
113 PRK14057 epimerase; Provisiona 80.5 68 0.0015 33.3 15.3 140 272-431 90-246 (254)
114 PLN03034 phosphoglycerate kina 80.5 16 0.00034 41.2 11.3 268 100-438 114-399 (481)
115 TIGR00612 ispG_gcpE 1-hydroxy- 80.4 18 0.00039 38.9 11.2 232 271-533 38-284 (346)
116 TIGR03128 RuMP_HxlA 3-hexulose 80.4 59 0.0013 31.6 15.6 136 272-425 68-205 (206)
117 PRK07695 transcriptional regul 80.2 28 0.0006 34.0 12.0 131 274-427 67-198 (201)
118 PRK00694 4-hydroxy-3-methylbut 79.9 34 0.00074 39.3 13.8 155 268-433 46-231 (606)
119 PRK00507 deoxyribose-phosphate 79.7 50 0.0011 33.4 13.8 149 263-426 17-176 (221)
120 cd04726 KGPDC_HPS 3-Keto-L-gul 79.6 19 0.00042 34.8 10.6 116 266-406 11-133 (202)
121 PRK00286 xseA exodeoxyribonucl 79.2 76 0.0016 35.0 16.3 191 142-371 10-230 (438)
122 PF03060 NMO: Nitronate monoox 79.1 31 0.00067 36.7 12.8 114 269-406 102-219 (330)
123 PRK15447 putative protease; Pr 78.7 22 0.00048 37.4 11.5 117 268-410 15-142 (301)
124 cd04732 HisA HisA. Phosphorib 78.5 52 0.0011 32.5 13.6 130 269-417 84-230 (234)
125 PF04551 GcpE: GcpE protein; 78.4 12 0.00025 40.6 9.2 154 270-430 34-201 (359)
126 PLN02925 4-hydroxy-3-methylbut 78.2 31 0.00068 40.5 13.1 154 268-430 111-293 (733)
127 TIGR00007 phosphoribosylformim 78.0 26 0.00056 34.8 11.3 126 268-415 82-227 (230)
128 TIGR01037 pyrD_sub1_fam dihydr 77.9 92 0.002 32.3 15.9 121 291-432 141-283 (300)
129 cd00405 PRAI Phosphoribosylant 77.8 26 0.00055 34.3 11.0 119 268-410 7-131 (203)
130 PRK13210 putative L-xylulose 5 77.7 72 0.0016 32.3 14.7 121 271-396 20-172 (284)
131 COG1465 Predicted alternative 77.6 41 0.00089 35.7 12.5 167 305-500 93-296 (376)
132 TIGR00973 leuA_bact 2-isopropy 77.5 67 0.0015 36.3 15.5 162 250-429 10-188 (494)
133 COG0826 Collagenase and relate 77.2 13 0.00029 40.1 9.4 117 268-410 14-148 (347)
134 cd00958 DhnA Class I fructose- 77.1 82 0.0018 31.4 16.9 134 268-426 77-234 (235)
135 TIGR00126 deoC deoxyribose-pho 77.1 33 0.00071 34.5 11.6 145 263-427 13-173 (211)
136 PRK04180 pyridoxal biosynthesi 77.1 36 0.00078 36.0 12.1 118 285-434 56-175 (293)
137 PF03102 NeuB: NeuB family; I 77.0 21 0.00045 36.6 10.3 98 292-416 55-154 (241)
138 PF00834 Ribul_P_3_epim: Ribul 76.8 15 0.00033 36.5 9.0 116 272-406 72-194 (201)
139 PRK07028 bifunctional hexulose 76.5 64 0.0014 35.5 14.8 137 272-427 73-211 (430)
140 PRK00043 thiE thiamine-phospha 76.5 42 0.00091 32.5 12.1 132 272-429 73-211 (212)
141 cd02803 OYE_like_FMN_family Ol 76.5 50 0.0011 34.6 13.4 132 263-406 129-311 (327)
142 PRK08005 epimerase; Validated 76.3 72 0.0016 32.1 13.7 130 272-423 73-208 (210)
143 PLN02591 tryptophan synthase 76.2 69 0.0015 33.0 13.9 118 271-406 97-218 (250)
144 PRK07315 fructose-bisphosphate 76.0 25 0.00055 37.0 10.9 126 298-429 67-200 (293)
145 PRK06512 thiamine-phosphate py 75.2 40 0.00087 33.9 11.8 134 273-428 80-214 (221)
146 TIGR01949 AroFGH_arch predicte 75.1 51 0.0011 33.7 12.7 146 263-428 31-190 (258)
147 PF00682 HMGL-like: HMGL-like 75.0 75 0.0016 31.6 13.7 192 265-476 11-216 (237)
148 PRK08999 hypothetical protein; 74.9 36 0.00077 35.5 11.7 42 114-155 147-188 (312)
149 KOG3111 D-ribulose-5-phosphate 74.5 99 0.0022 31.1 14.3 135 277-430 84-221 (224)
150 PRK11858 aksA trans-homoaconit 74.5 1.4E+02 0.0029 32.6 19.0 156 264-429 22-187 (378)
151 PLN02746 hydroxymethylglutaryl 74.3 1.1E+02 0.0023 33.3 15.3 165 249-429 54-239 (347)
152 cd00381 IMPDH IMPDH: The catal 74.2 6.3 0.00014 42.0 6.0 50 101-150 83-132 (325)
153 PRK07428 nicotinate-nucleotide 74.2 12 0.00026 39.3 8.0 67 267-338 203-272 (288)
154 cd00954 NAL N-Acetylneuraminic 74.0 18 0.0004 37.5 9.2 97 271-371 25-134 (288)
155 PRK06015 keto-hydroxyglutarate 73.9 42 0.0009 33.6 11.3 41 353-407 85-125 (201)
156 cd00945 Aldolase_Class_I Class 73.8 80 0.0017 29.7 14.5 43 385-429 64-110 (201)
157 cd04727 pdxS PdxS is a subunit 73.7 49 0.0011 34.8 12.1 113 290-434 52-166 (283)
158 TIGR00262 trpA tryptophan synt 73.6 62 0.0013 33.3 12.9 118 271-406 106-227 (256)
159 PRK12483 threonine dehydratase 73.2 55 0.0012 37.4 13.4 155 309-499 52-224 (521)
160 cd04742 NPD_FabD 2-Nitropropan 73.2 70 0.0015 35.5 13.8 124 269-405 84-247 (418)
161 PRK03620 5-dehydro-4-deoxygluc 73.0 20 0.00044 37.6 9.4 97 271-371 32-138 (303)
162 TIGR00736 nifR3_rel_arch TIM-b 73.0 77 0.0017 32.3 13.1 122 265-407 77-221 (231)
163 COG0036 Rpe Pentose-5-phosphat 72.9 98 0.0021 31.5 13.6 133 272-425 76-216 (220)
164 TIGR01182 eda Entner-Doudoroff 72.9 42 0.00092 33.6 11.1 109 266-406 18-128 (204)
165 COG1751 Uncharacterized conser 72.4 9.2 0.0002 36.7 5.9 47 451-497 12-60 (186)
166 PRK07226 fructose-bisphosphate 72.3 67 0.0015 33.0 12.9 141 263-427 34-193 (267)
167 PRK05581 ribulose-phosphate 3- 72.1 73 0.0016 31.1 12.6 131 271-428 20-163 (220)
168 PRK09389 (R)-citramalate synth 72.1 1.8E+02 0.0039 32.9 18.5 154 265-428 21-184 (488)
169 TIGR00977 LeuA_rel 2-isopropyl 71.9 1.9E+02 0.0041 33.1 17.8 171 250-430 10-197 (526)
170 TIGR03569 NeuB_NnaB N-acetylne 71.6 70 0.0015 34.4 13.1 93 292-409 75-172 (329)
171 KOG3974 Predicted sugar kinase 71.6 28 0.0006 36.4 9.5 114 276-399 53-178 (306)
172 cd01562 Thr-dehyd Threonine de 71.5 62 0.0013 33.4 12.5 119 355-498 78-202 (304)
173 cd02811 IDI-2_FMN Isopentenyl- 71.3 95 0.0021 33.0 14.0 55 365-432 255-312 (326)
174 cd00408 DHDPS-like Dihydrodipi 71.2 25 0.00054 36.1 9.4 97 271-371 22-129 (281)
175 PRK06552 keto-hydroxyglutarate 70.8 83 0.0018 31.6 12.7 100 289-406 21-136 (213)
176 TIGR00674 dapA dihydrodipicoli 70.7 23 0.0005 36.6 9.1 97 271-371 23-130 (285)
177 TIGR01859 fruc_bis_ald_ fructo 70.4 58 0.0013 34.1 11.9 117 309-429 75-199 (282)
178 PRK05718 keto-hydroxyglutarate 70.0 91 0.002 31.3 12.8 38 354-405 97-134 (212)
179 TIGR03586 PseI pseudaminic aci 70.0 83 0.0018 33.8 13.2 91 293-408 77-170 (327)
180 PRK07334 threonine dehydratase 69.9 75 0.0016 34.7 13.2 118 356-498 85-208 (403)
181 PRK00278 trpC indole-3-glycero 69.4 1.2E+02 0.0026 31.2 13.9 130 272-422 125-256 (260)
182 cd00950 DHDPS Dihydrodipicolin 68.4 28 0.0006 35.9 9.0 97 271-371 25-132 (284)
183 PLN02970 serine racemase 68.3 85 0.0018 33.3 12.9 118 356-498 89-212 (328)
184 TIGR03128 RuMP_HxlA 3-hexulose 68.2 84 0.0018 30.5 12.0 122 264-407 8-134 (206)
185 cd01561 CBS_like CBS_like: Thi 67.9 1.1E+02 0.0024 31.5 13.5 123 356-498 67-197 (291)
186 TIGR00343 pyridoxal 5'-phospha 67.6 84 0.0018 33.2 12.2 114 287-432 51-166 (287)
187 PRK04147 N-acetylneuraminate l 67.6 47 0.001 34.5 10.7 97 271-371 28-136 (293)
188 COG0710 AroD 3-dehydroquinate 67.5 1.1E+02 0.0025 31.2 12.9 143 265-427 75-229 (231)
189 cd07939 DRE_TIM_NifV Streptomy 67.3 1.5E+02 0.0033 30.2 17.4 215 264-511 16-241 (259)
190 COG0119 LeuA Isopropylmalate/h 67.2 1.3E+02 0.0028 33.4 14.3 167 250-430 11-189 (409)
191 PRK02615 thiamine-phosphate py 67.1 49 0.0011 35.8 10.8 54 102-155 148-201 (347)
192 COG2225 AceB Malate synthase [ 67.1 53 0.0011 37.4 11.2 214 96-373 92-340 (545)
193 cd07948 DRE_TIM_HCS Saccharomy 67.0 1.6E+02 0.0035 30.4 18.4 164 249-428 8-182 (262)
194 TIGR01127 ilvA_1Cterm threonin 67.0 89 0.0019 33.7 13.0 120 355-499 61-186 (380)
195 TIGR01361 DAHP_synth_Bsub phos 67.0 36 0.00078 35.2 9.5 91 292-406 75-166 (260)
196 TIGR02660 nifV_homocitr homoci 66.8 1.9E+02 0.0041 31.2 18.8 155 264-429 19-184 (365)
197 PRK12595 bifunctional 3-deoxy- 66.4 60 0.0013 35.2 11.4 90 293-406 169-259 (360)
198 TIGR01302 IMP_dehydrog inosine 66.3 10 0.00022 42.1 5.7 49 101-149 213-261 (450)
199 PRK13397 3-deoxy-7-phosphohept 66.0 1.1E+02 0.0024 31.7 12.6 89 294-406 67-156 (250)
200 PRK14024 phosphoribosyl isomer 65.8 1.1E+02 0.0023 31.1 12.5 136 268-420 85-236 (241)
201 cd00377 ICL_PEPM Members of th 65.8 37 0.0008 34.6 9.2 112 271-406 88-226 (243)
202 cd04738 DHOD_2_like Dihydrooro 65.2 1.3E+02 0.0028 32.0 13.5 118 279-408 159-311 (327)
203 PRK14045 1-aminocyclopropane-1 65.2 1.9E+02 0.0041 30.6 14.8 127 355-498 85-221 (329)
204 PRK05096 guanosine 5'-monophos 65.0 13 0.00027 40.1 5.7 48 102-149 98-147 (346)
205 PRK06852 aldolase; Validated 64.8 47 0.001 35.3 9.9 128 319-470 56-205 (304)
206 PRK03170 dihydrodipicolinate s 64.8 33 0.00071 35.6 8.8 97 271-371 26-133 (292)
207 PRK13962 bifunctional phosphog 64.7 62 0.0013 37.9 11.7 266 100-437 35-319 (645)
208 cd02809 alpha_hydroxyacid_oxid 64.7 1.3E+02 0.0028 31.5 13.2 113 271-407 133-257 (299)
209 PLN02417 dihydrodipicolinate s 64.3 34 0.00075 35.4 8.8 95 271-371 26-131 (280)
210 PRK02615 thiamine-phosphate py 63.8 86 0.0019 34.0 11.9 130 274-428 211-344 (347)
211 PRK06382 threonine dehydratase 63.8 1.2E+02 0.0027 33.1 13.4 118 357-499 88-211 (406)
212 COG1830 FbaB DhnA-type fructos 63.4 1.1E+02 0.0025 31.9 12.1 166 298-487 13-202 (265)
213 PRK00366 ispG 4-hydroxy-3-meth 63.3 82 0.0018 34.3 11.4 218 270-517 45-273 (360)
214 cd04723 HisA_HisF Phosphoribos 63.3 93 0.002 31.3 11.5 131 268-419 88-231 (233)
215 PRK09250 fructose-bisphosphate 63.1 1.3E+02 0.0028 32.7 12.9 136 320-475 89-241 (348)
216 PRK06381 threonine synthase; V 63.0 1.2E+02 0.0025 31.8 12.7 120 356-498 77-209 (319)
217 TIGR01163 rpe ribulose-phospha 63.0 1.5E+02 0.0032 28.6 15.1 137 270-430 14-160 (210)
218 cd00951 KDGDH 5-dehydro-4-deox 62.8 41 0.00089 35.0 9.1 95 271-371 25-131 (289)
219 PLN02321 2-isopropylmalate syn 62.7 1.6E+02 0.0036 34.4 14.6 168 250-429 95-282 (632)
220 PRK06843 inosine 5-monophospha 62.6 13 0.00028 41.0 5.4 50 100-149 141-190 (404)
221 TIGR01305 GMP_reduct_1 guanosi 62.4 16 0.00034 39.4 5.9 48 102-149 97-146 (343)
222 cd04728 ThiG Thiazole synthase 62.2 1.5E+02 0.0032 30.8 12.6 71 345-431 159-229 (248)
223 PRK08227 autoinducer 2 aldolas 62.2 1.3E+02 0.0027 31.5 12.4 150 319-492 39-196 (264)
224 PRK06815 hypothetical protein; 62.2 98 0.0021 32.6 11.9 118 356-498 82-205 (317)
225 PRK07226 fructose-bisphosphate 62.1 1.5E+02 0.0033 30.4 13.1 138 271-428 97-253 (267)
226 PF03437 BtpA: BtpA family; I 61.9 26 0.00057 36.2 7.3 74 278-355 170-250 (254)
227 PF00899 ThiF: ThiF family; I 61.9 51 0.0011 29.9 8.6 66 295-371 58-123 (135)
228 COG0352 ThiE Thiamine monophos 61.8 1.3E+02 0.0028 30.3 12.0 131 273-428 74-208 (211)
229 PRK05848 nicotinate-nucleotide 61.8 32 0.00069 36.0 7.9 67 269-338 191-258 (273)
230 cd01573 modD_like ModD; Quinol 61.8 28 0.00062 36.2 7.6 66 268-338 191-259 (272)
231 PRK13209 L-xylulose 5-phosphat 61.7 1.2E+02 0.0027 30.7 12.3 40 271-310 25-74 (283)
232 TIGR01138 cysM cysteine syntha 61.6 2E+02 0.0044 29.8 14.0 121 356-498 73-200 (290)
233 cd01568 QPRTase_NadC Quinolina 61.3 23 0.00051 36.7 6.9 66 266-337 187-255 (269)
234 PRK09224 threonine dehydratase 61.3 1.4E+02 0.003 33.9 13.5 120 355-499 81-207 (504)
235 PRK10737 FKBP-type peptidyl-pr 61.3 27 0.00059 34.8 7.0 61 179-239 50-119 (196)
236 cd00429 RPE Ribulose-5-phospha 61.2 1.6E+02 0.0034 28.3 15.0 133 271-430 16-161 (211)
237 TIGR02320 PEP_mutase phosphoen 61.2 66 0.0014 33.8 10.2 67 271-337 96-189 (285)
238 PRK05458 guanosine 5'-monophos 61.2 14 0.0003 39.6 5.3 44 106-149 91-136 (326)
239 cd05565 PTS_IIB_lactose PTS_II 61.1 54 0.0012 29.1 8.2 67 290-371 12-78 (99)
240 cd02808 GltS_FMN Glutamate syn 61.0 21 0.00045 39.1 6.8 92 269-373 226-341 (392)
241 PRK07315 fructose-bisphosphate 61.0 2.2E+02 0.0048 30.0 15.5 52 102-155 79-130 (293)
242 PRK08385 nicotinate-nucleotide 60.4 37 0.00079 35.6 8.1 65 269-338 191-260 (278)
243 PRK13398 3-deoxy-7-phosphohept 60.3 1.5E+02 0.0033 30.8 12.6 106 292-421 77-185 (266)
244 TIGR02814 pfaD_fam PfaD family 60.3 1.3E+02 0.0028 33.8 12.7 124 269-405 89-252 (444)
245 PRK07259 dihydroorotate dehydr 60.1 2.2E+02 0.0047 29.6 15.1 145 267-432 103-283 (301)
246 cd02922 FCB2_FMN Flavocytochro 60.0 1.7E+02 0.0038 31.5 13.4 94 290-406 200-300 (344)
247 PF01274 Malate_synthase: Mala 59.8 20 0.00043 40.9 6.4 124 280-405 203-363 (526)
248 PRK09856 fructoselysine 3-epim 59.8 1.6E+02 0.0034 29.7 12.6 121 271-396 17-171 (275)
249 TIGR00674 dapA dihydrodipicoli 59.7 57 0.0012 33.8 9.5 97 325-431 26-125 (285)
250 TIGR01136 cysKM cysteine synth 59.6 1.9E+02 0.004 30.1 13.3 121 356-498 72-200 (299)
251 TIGR00853 pts-lac PTS system, 59.2 48 0.001 28.9 7.5 63 294-371 19-81 (95)
252 COG0329 DapA Dihydrodipicolina 59.1 98 0.0021 32.6 11.2 106 271-388 29-145 (299)
253 PRK08638 threonine dehydratase 59.0 1.4E+02 0.0031 31.7 12.6 119 355-498 88-212 (333)
254 PRK05286 dihydroorotate dehydr 58.9 1.3E+02 0.0028 32.3 12.2 131 267-409 156-321 (344)
255 PRK15452 putative protease; Pr 58.8 36 0.00078 38.0 8.2 85 309-406 4-96 (443)
256 PTZ00314 inosine-5'-monophosph 58.7 13 0.00029 41.9 4.9 45 105-149 234-278 (495)
257 PRK15447 putative protease; Pr 58.5 56 0.0012 34.3 9.3 67 331-406 29-95 (301)
258 PRK00043 thiE thiamine-phospha 58.4 1.8E+02 0.0039 28.1 12.3 103 269-406 23-131 (212)
259 PRK05283 deoxyribose-phosphate 58.4 1.3E+02 0.0029 31.2 11.7 147 263-428 21-189 (257)
260 PRK07709 fructose-bisphosphate 58.4 1.1E+02 0.0025 32.1 11.4 126 299-429 68-202 (285)
261 cd00564 TMP_TenI Thiamine mono 58.3 1.6E+02 0.0035 27.6 12.1 126 273-422 65-194 (196)
262 PRK07084 fructose-bisphosphate 58.3 1.3E+02 0.0027 32.4 11.7 126 300-429 77-215 (321)
263 PF00701 DHDPS: Dihydrodipicol 58.0 95 0.0021 32.0 10.8 97 271-371 26-133 (289)
264 PF00677 Lum_binding: Lumazine 58.0 40 0.00087 28.8 6.6 55 199-255 20-82 (85)
265 PRK07896 nicotinate-nucleotide 57.6 45 0.00099 35.2 8.3 65 269-338 208-275 (289)
266 PF01729 QRPTase_C: Quinolinat 57.6 27 0.00058 33.9 6.1 63 270-337 90-155 (169)
267 PRK00208 thiG thiazole synthas 57.6 2E+02 0.0043 29.9 12.6 72 345-432 159-230 (250)
268 cd04737 LOX_like_FMN L-Lactate 57.4 1.3E+02 0.0028 32.7 11.9 93 291-406 209-305 (351)
269 PRK00311 panB 3-methyl-2-oxobu 57.4 1.9E+02 0.0042 30.1 12.8 146 263-430 18-196 (264)
270 TIGR00683 nanA N-acetylneurami 57.3 1.1E+02 0.0025 31.8 11.3 97 271-371 25-134 (290)
271 TIGR00343 pyridoxal 5'-phospha 57.3 2.6E+02 0.0057 29.6 14.6 138 271-428 80-250 (287)
272 PRK04452 acetyl-CoA decarbonyl 57.1 1.8E+02 0.004 31.2 12.7 149 267-429 136-312 (319)
273 PRK07998 gatY putative fructos 57.0 87 0.0019 33.0 10.2 117 307-428 73-197 (283)
274 PF01645 Glu_synthase: Conserv 57.0 80 0.0017 34.5 10.2 137 251-406 150-303 (368)
275 cd00957 Transaldolase_TalAB Tr 56.6 7.7 0.00017 41.3 2.4 20 275-295 164-183 (313)
276 TIGR00259 thylakoid_BtpA membr 56.5 51 0.0011 34.2 8.3 71 265-338 154-228 (257)
277 TIGR02356 adenyl_thiF thiazole 56.5 60 0.0013 32.0 8.6 65 296-371 78-142 (202)
278 PRK11840 bifunctional sulfur c 56.4 2E+02 0.0043 31.0 12.8 82 333-430 221-302 (326)
279 PF07521 RMMBL: RNA-metabolisi 55.9 8.1 0.00018 28.8 1.8 24 125-148 7-31 (43)
280 PRK12290 thiE thiamine-phospha 55.9 85 0.0018 35.1 10.3 96 320-428 306-414 (437)
281 cd02932 OYE_YqiM_FMN Old yello 55.6 2.8E+02 0.0061 29.4 14.4 126 264-406 143-320 (336)
282 cd04727 pdxS PdxS is a subunit 55.5 1.5E+02 0.0032 31.4 11.4 139 270-428 77-247 (283)
283 PRK07114 keto-hydroxyglutarate 55.5 1.5E+02 0.0034 30.0 11.4 41 353-407 100-140 (222)
284 TIGR01137 cysta_beta cystathio 55.5 2.1E+02 0.0045 31.5 13.5 126 356-499 76-208 (454)
285 TIGR01306 GMP_reduct_2 guanosi 55.5 23 0.00049 38.0 5.7 48 102-149 84-133 (321)
286 PRK07476 eutB threonine dehydr 55.4 1.8E+02 0.004 30.6 12.6 118 356-498 81-204 (322)
287 PLN02274 inosine-5'-monophosph 55.3 21 0.00046 40.4 5.8 50 100-149 236-285 (505)
288 PRK10886 DnaA initiator-associ 55.3 65 0.0014 31.9 8.6 94 451-550 24-145 (196)
289 PRK08639 threonine dehydratase 55.2 1.7E+02 0.0037 32.2 12.8 121 356-498 87-216 (420)
290 COG0826 Collagenase and relate 55.2 74 0.0016 34.4 9.6 82 318-406 13-99 (347)
291 PLN02424 ketopantoate hydroxym 55.1 2E+02 0.0043 31.1 12.6 133 261-406 36-202 (332)
292 COG0274 DeoC Deoxyribose-phosp 55.1 71 0.0015 32.6 8.8 148 263-426 19-180 (228)
293 TIGR00237 xseA exodeoxyribonuc 55.0 3E+02 0.0065 30.6 14.6 187 143-371 5-225 (432)
294 cd06557 KPHMT-like Ketopantoat 54.9 1.4E+02 0.0031 30.8 11.3 145 264-430 16-193 (254)
295 PRK09250 fructose-bisphosphate 54.8 2E+02 0.0043 31.3 12.6 90 269-370 92-197 (348)
296 cd00952 CHBPH_aldolase Trans-o 54.7 1.4E+02 0.0031 31.4 11.6 97 271-371 33-141 (309)
297 PF01136 Peptidase_U32: Peptid 54.6 22 0.00048 35.3 5.3 42 112-153 157-198 (233)
298 cd04737 LOX_like_FMN L-Lactate 54.6 37 0.00079 36.8 7.2 67 271-341 233-309 (351)
299 PRK09590 celB cellobiose phosp 54.5 97 0.0021 27.7 8.7 77 293-388 16-94 (104)
300 TIGR02313 HpaI-NOT-DapA 2,4-di 54.4 1.4E+02 0.0031 31.1 11.4 97 271-371 25-133 (294)
301 PLN03013 cysteine synthase 54.3 2.1E+02 0.0046 31.9 13.2 122 357-499 190-318 (429)
302 PRK08329 threonine synthase; V 54.3 3E+02 0.0065 29.4 16.8 118 356-498 118-247 (347)
303 cd01485 E1-1_like Ubiquitin ac 54.1 76 0.0017 31.2 8.9 66 296-371 78-144 (198)
304 PRK05742 nicotinate-nucleotide 53.9 48 0.001 34.7 7.7 64 267-338 196-262 (277)
305 cd04739 DHOD_like Dihydroorota 53.5 3E+02 0.0066 29.2 15.5 145 268-433 112-288 (325)
306 cd07941 DRE_TIM_LeuA3 Desulfob 53.4 2.7E+02 0.0059 28.7 17.0 170 250-429 7-193 (273)
307 PRK07048 serine/threonine dehy 53.4 1.8E+02 0.0038 30.6 12.0 119 356-499 86-210 (321)
308 TIGR02355 moeB molybdopterin s 53.2 72 0.0016 32.4 8.8 65 296-371 81-145 (240)
309 PRK08610 fructose-bisphosphate 53.2 1.4E+02 0.0031 31.4 11.1 117 308-429 77-202 (286)
310 TIGR03572 WbuZ glycosyl amidat 53.2 2.2E+02 0.0047 28.3 12.1 120 269-406 85-227 (232)
311 TIGR01139 cysK cysteine syntha 52.9 2.5E+02 0.0054 29.1 12.9 121 356-498 71-200 (298)
312 PF01081 Aldolase: KDPG and KH 52.8 59 0.0013 32.3 7.8 113 268-412 20-134 (196)
313 COG1157 FliI Flagellar biosynt 52.7 81 0.0017 35.1 9.4 243 158-432 31-303 (441)
314 PRK06110 hypothetical protein; 52.5 2E+02 0.0044 30.3 12.3 117 356-498 84-206 (322)
315 cd01492 Aos1_SUMO Ubiquitin ac 52.5 90 0.002 30.7 9.1 64 296-371 78-141 (197)
316 PRK09140 2-dehydro-3-deoxy-6-p 52.3 2.4E+02 0.0052 28.1 12.1 110 266-406 20-131 (206)
317 PRK13398 3-deoxy-7-phosphohept 52.2 1.6E+02 0.0034 30.6 11.2 126 260-405 90-230 (266)
318 TIGR03249 KdgD 5-dehydro-4-deo 52.1 1E+02 0.0022 32.1 9.9 95 271-371 30-136 (296)
319 PRK08198 threonine dehydratase 52.0 2.8E+02 0.0061 30.1 13.7 119 356-499 84-208 (404)
320 PF00290 Trp_syntA: Tryptophan 52.0 2.2E+02 0.0047 29.6 12.1 117 273-406 108-226 (259)
321 TIGR02708 L_lactate_ox L-lacta 51.9 38 0.00082 36.9 6.8 68 270-341 239-316 (367)
322 PRK07028 bifunctional hexulose 51.6 2.8E+02 0.0061 30.5 13.7 126 260-406 8-138 (430)
323 cd00952 CHBPH_aldolase Trans-o 51.3 1.1E+02 0.0024 32.2 10.1 96 325-430 36-134 (309)
324 PLN02495 oxidoreductase, actin 51.3 1.9E+02 0.0042 31.8 12.1 50 350-409 166-217 (385)
325 PLN02550 threonine dehydratase 51.0 2.1E+02 0.0045 33.3 12.8 123 356-503 171-300 (591)
326 PRK06096 molybdenum transport 50.7 38 0.00082 35.7 6.4 64 269-337 198-264 (284)
327 PRK00278 trpC indole-3-glycero 50.6 2.7E+02 0.0059 28.6 12.6 108 269-407 71-188 (260)
328 TIGR00874 talAB transaldolase. 50.5 11 0.00024 40.2 2.4 20 275-295 164-183 (317)
329 cd00954 NAL N-Acetylneuraminic 50.4 1.1E+02 0.0024 31.8 9.8 95 323-429 26-126 (288)
330 cd00950 DHDPS Dihydrodipicolin 50.3 90 0.0019 32.1 9.1 98 324-431 27-127 (284)
331 TIGR02708 L_lactate_ox L-lacta 50.1 98 0.0021 33.8 9.6 94 291-408 216-314 (367)
332 cd07938 DRE_TIM_HMGL 3-hydroxy 49.9 3.2E+02 0.0069 28.4 14.4 169 250-428 7-190 (274)
333 cd02933 OYE_like_FMN Old yello 49.9 2.5E+02 0.0055 30.0 12.6 125 263-406 140-314 (338)
334 PRK07695 transcriptional regul 49.1 37 0.0008 33.1 5.8 35 115-149 18-52 (201)
335 PRK08185 hypothetical protein; 49.1 2.3E+02 0.0049 29.9 11.8 119 307-429 67-197 (283)
336 PRK04147 N-acetylneuraminate l 48.9 1.2E+02 0.0026 31.5 9.9 97 324-431 30-131 (293)
337 PF00701 DHDPS: Dihydrodipicol 48.9 91 0.002 32.2 8.9 170 323-515 27-204 (289)
338 cd00331 IGPS Indole-3-glycerol 48.9 2.7E+02 0.0059 27.3 14.5 130 266-428 29-168 (217)
339 TIGR00078 nadC nicotinate-nucl 48.7 30 0.00064 35.9 5.2 64 266-337 184-250 (265)
340 PRK02083 imidazole glycerol ph 48.6 3E+02 0.0066 27.8 14.5 130 269-419 85-240 (253)
341 PRK11750 gltB glutamate syntha 48.5 85 0.0018 40.1 9.7 118 276-405 961-1095(1485)
342 TIGR01037 pyrD_sub1_fam dihydr 48.5 3.3E+02 0.0072 28.2 14.5 85 308-407 90-190 (300)
343 PF01116 F_bP_aldolase: Fructo 48.2 2.3E+02 0.005 29.8 11.8 119 307-429 72-203 (287)
344 PF01261 AP_endonuc_2: Xylose 48.1 41 0.0009 31.7 5.8 96 274-369 2-129 (213)
345 PRK04180 pyridoxal biosynthesi 48.1 3E+02 0.0064 29.3 12.3 139 271-429 87-257 (293)
346 TIGR00693 thiE thiamine-phosph 47.9 2.6E+02 0.0056 26.8 11.6 131 271-422 64-196 (196)
347 PRK05692 hydroxymethylglutaryl 47.9 3.5E+02 0.0076 28.3 14.4 167 250-429 13-197 (287)
348 TIGR00222 panB 3-methyl-2-oxob 47.8 2.7E+02 0.0059 29.1 12.0 146 262-430 17-195 (263)
349 TIGR02991 ectoine_eutB ectoine 47.6 3.2E+02 0.0069 28.8 12.9 117 356-497 81-203 (317)
350 PRK08526 threonine dehydratase 47.6 2.3E+02 0.0049 31.2 12.1 119 356-499 82-206 (403)
351 cd00757 ThiF_MoeB_HesA_family 47.6 98 0.0021 30.9 8.6 66 295-371 77-142 (228)
352 PF05690 ThiG: Thiazole biosyn 47.2 48 0.001 34.1 6.2 84 331-430 145-228 (247)
353 PRK06793 fliI flagellum-specif 47.0 4.3E+02 0.0094 29.6 14.1 246 158-432 28-295 (432)
354 PRK06801 hypothetical protein; 46.9 2.1E+02 0.0045 30.2 11.2 119 306-428 72-201 (286)
355 cd04731 HisF The cyclase subun 46.9 3.1E+02 0.0067 27.4 13.2 46 362-419 190-236 (243)
356 PRK13396 3-deoxy-7-phosphohept 46.9 2.5E+02 0.0053 30.6 11.9 87 296-406 155-242 (352)
357 PLN02565 cysteine synthase 46.9 2.9E+02 0.0063 29.3 12.5 121 357-498 82-209 (322)
358 cd00953 KDG_aldolase KDG (2-ke 46.8 1.3E+02 0.0028 31.1 9.6 93 271-371 24-127 (279)
359 cd00959 DeoC 2-deoxyribose-5-p 46.8 2.3E+02 0.0049 27.9 10.9 148 263-427 12-172 (203)
360 TIGR01334 modD putative molybd 46.8 59 0.0013 34.1 7.0 64 269-337 197-263 (277)
361 TIGR00736 nifR3_rel_arch TIM-b 46.8 73 0.0016 32.5 7.5 69 274-346 155-229 (231)
362 TIGR01036 pyrD_sub2 dihydrooro 46.5 2.6E+02 0.0056 30.0 12.1 51 351-409 188-247 (335)
363 COG1440 CelA Phosphotransferas 46.4 96 0.0021 27.9 7.2 66 290-370 13-78 (102)
364 PRK11761 cysM cysteine synthas 46.2 3.3E+02 0.0072 28.4 12.7 121 356-498 77-204 (296)
365 TIGR03528 2_3_DAP_am_ly diamin 46.2 2.7E+02 0.0058 30.6 12.4 120 356-497 127-263 (396)
366 PRK05690 molybdopterin biosynt 46.2 95 0.0021 31.6 8.4 65 296-371 89-153 (245)
367 cd00947 TBP_aldolase_IIB Tagat 46.1 2.4E+02 0.0051 29.6 11.4 119 307-429 68-195 (276)
368 TIGR00167 cbbA ketose-bisphosp 45.6 1.9E+02 0.0042 30.4 10.7 123 301-429 70-205 (288)
369 cd01487 E1_ThiF_like E1_ThiF_l 45.6 1.1E+02 0.0023 29.5 8.3 66 295-371 54-120 (174)
370 TIGR00739 yajC preprotein tran 45.4 30 0.00064 29.8 3.8 42 206-248 32-73 (84)
371 cd00408 DHDPS-like Dihydrodipi 45.2 1.5E+02 0.0033 30.3 9.8 159 325-505 25-192 (281)
372 PRK08644 thiamine biosynthesis 45.0 1.1E+02 0.0024 30.5 8.4 64 297-371 85-149 (212)
373 cd04736 MDH_FMN Mandelate dehy 44.9 1.1E+02 0.0025 33.2 9.1 60 109-175 102-161 (361)
374 PF04028 DUF374: Domain of unk 44.8 1.1E+02 0.0024 25.7 7.1 58 101-165 10-68 (74)
375 PRK10717 cysteine synthase A; 44.8 4E+02 0.0087 28.1 13.3 127 356-499 78-214 (330)
376 cd02810 DHOD_DHPD_FMN Dihydroo 44.7 3.3E+02 0.0072 27.9 12.3 52 350-409 146-199 (289)
377 PRK09195 gatY tagatose-bisphos 44.5 2.4E+02 0.0051 29.8 11.1 121 295-429 63-201 (284)
378 PRK03512 thiamine-phosphate py 44.3 3.2E+02 0.0069 27.2 11.6 125 274-427 73-207 (211)
379 cd00405 PRAI Phosphoribosylant 44.1 3.1E+02 0.0068 26.7 11.8 114 274-412 67-189 (203)
380 cd02808 GltS_FMN Glutamate syn 44.0 4.7E+02 0.01 28.6 14.5 119 275-406 178-314 (392)
381 cd01572 QPRTase Quinolinate ph 44.0 47 0.001 34.5 5.8 65 266-338 188-255 (268)
382 PLN02741 riboflavin synthase 43.8 71 0.0015 31.7 6.8 55 200-256 24-85 (194)
383 PRK12738 kbaY tagatose-bisphos 43.7 2.7E+02 0.0058 29.4 11.4 121 295-429 63-201 (286)
384 cd04733 OYE_like_2_FMN Old yel 43.7 4.3E+02 0.0092 28.1 13.8 23 264-286 138-168 (338)
385 PRK08417 dihydroorotase; Provi 43.7 4.5E+02 0.0098 28.4 15.9 103 262-373 41-151 (386)
386 cd02911 arch_FMN Archeal FMN-b 43.3 1.1E+02 0.0024 31.0 8.3 96 288-406 121-220 (233)
387 PF02599 CsrA: Global regulato 42.7 63 0.0014 25.6 5.0 32 212-244 6-37 (54)
388 PLN02898 HMP-P kinase/thiamin- 42.6 2.5E+02 0.0054 31.6 11.8 94 321-430 397-499 (502)
389 cd04501 SGNH_hydrolase_like_4 42.6 45 0.00097 31.3 5.1 39 333-371 64-102 (183)
390 PRK13938 phosphoheptose isomer 42.3 3.5E+02 0.0076 26.7 12.7 94 451-550 28-149 (196)
391 TIGR00187 ribE riboflavin synt 42.3 62 0.0013 32.3 6.1 56 199-256 22-85 (200)
392 COG4043 Preprotein translocase 42.1 33 0.00072 30.7 3.6 29 203-232 26-54 (111)
393 cd02940 DHPD_FMN Dihydropyrimi 42.1 2.4E+02 0.0052 29.4 10.8 47 351-407 153-201 (299)
394 KOG2550 IMP dehydrogenase/GMP 42.1 43 0.00094 37.1 5.3 46 105-150 244-289 (503)
395 PRK05567 inosine 5'-monophosph 41.9 58 0.0013 36.6 6.5 50 100-149 216-265 (486)
396 cd03332 LMO_FMN L-Lactate 2-mo 41.8 2.1E+02 0.0046 31.4 10.6 71 100-175 113-184 (383)
397 cd02911 arch_FMN Archeal FMN-b 41.7 70 0.0015 32.4 6.5 60 273-339 158-222 (233)
398 cd02809 alpha_hydroxyacid_oxid 41.6 75 0.0016 33.2 7.0 67 271-341 184-260 (299)
399 cd08205 RuBisCO_IV_RLP Ribulos 41.6 3.4E+02 0.0073 29.6 12.1 75 265-339 143-232 (367)
400 cd08567 GDPD_SpGDE_like Glycer 41.5 1.6E+02 0.0035 29.5 9.2 94 282-405 165-258 (263)
401 TIGR01036 pyrD_sub2 dihydrooro 41.4 2.9E+02 0.0064 29.6 11.5 88 308-407 210-318 (335)
402 cd00755 YgdL_like Family of ac 41.4 71 0.0015 32.5 6.5 83 296-393 68-151 (231)
403 PRK00748 1-(5-phosphoribosyl)- 41.0 3.2E+02 0.007 26.9 11.1 126 268-415 84-229 (233)
404 PRK03170 dihydrodipicolinate s 41.0 1.7E+02 0.0037 30.2 9.5 96 325-431 29-128 (292)
405 COG2070 Dioxygenases related t 40.9 3.2E+02 0.0069 29.4 11.7 112 271-405 94-212 (336)
406 TIGR00875 fsa_talC_mipB fructo 40.9 76 0.0016 31.9 6.6 59 273-337 115-185 (213)
407 PTZ00344 pyridoxal kinase; Pro 40.8 1.9E+02 0.0041 30.0 9.8 111 261-372 53-182 (296)
408 cd02922 FCB2_FMN Flavocytochro 40.6 84 0.0018 33.9 7.3 93 270-366 224-335 (344)
409 PRK13982 bifunctional SbtC-lik 40.5 5.4E+02 0.012 29.2 13.8 180 316-545 195-417 (475)
410 PF01207 Dus: Dihydrouridine s 40.5 54 0.0012 34.6 5.7 70 269-343 140-219 (309)
411 PRK07591 threonine synthase; V 40.3 3.4E+02 0.0073 30.0 12.1 120 355-498 150-284 (421)
412 smart00729 Elp3 Elongator prot 40.2 2.1E+02 0.0045 26.6 9.3 46 107-152 93-147 (216)
413 COG0167 PyrD Dihydroorotate de 40.2 4.1E+02 0.0088 28.5 12.1 148 266-430 107-293 (310)
414 PRK13509 transcriptional repre 40.1 99 0.0021 31.6 7.4 63 451-516 80-142 (251)
415 TIGR01303 IMP_DH_rel_1 IMP deh 40.1 43 0.00094 37.7 5.2 50 100-149 213-262 (475)
416 PF03932 CutC: CutC family; I 39.7 4E+02 0.0087 26.6 13.0 142 269-432 9-170 (201)
417 cd08556 GDPD Glycerophosphodie 39.4 2.2E+02 0.0048 26.5 9.3 40 353-405 148-187 (189)
418 PRK10411 DNA-binding transcrip 39.3 1.1E+02 0.0024 31.1 7.6 64 450-516 79-142 (240)
419 PRK05638 threonine synthase; V 39.0 2.7E+02 0.0059 30.8 11.2 117 355-496 125-252 (442)
420 PLN02495 oxidoreductase, actin 39.0 5.7E+02 0.012 28.2 16.6 145 265-426 124-318 (385)
421 cd05564 PTS_IIB_chitobiose_lic 38.9 1.4E+02 0.003 25.9 7.2 61 295-370 16-76 (96)
422 PLN02826 dihydroorotate dehydr 38.9 5.8E+02 0.013 28.3 16.9 88 307-406 261-370 (409)
423 PRK09289 riboflavin synthase s 38.6 96 0.0021 30.8 6.8 55 200-256 23-84 (194)
424 PRK13111 trpA tryptophan synth 38.5 3E+02 0.0066 28.4 10.7 117 270-400 107-225 (258)
425 PF04131 NanE: Putative N-acet 38.4 3.5E+02 0.0075 27.1 10.5 124 275-427 7-142 (192)
426 PRK09427 bifunctional indole-3 37.9 69 0.0015 35.9 6.3 110 268-405 167-283 (454)
427 TIGR02079 THD1 threonine dehyd 37.4 4.4E+02 0.0096 28.9 12.4 119 356-498 78-205 (409)
428 TIGR03844 cysteate_syn cysteat 37.4 2.7E+02 0.0059 30.6 10.7 86 450-537 100-189 (398)
429 PRK01712 carbon storage regula 37.3 80 0.0017 26.0 4.9 30 212-242 6-35 (64)
430 cd00452 KDPG_aldolase KDPG and 37.3 2.2E+02 0.0048 27.5 9.1 104 270-409 66-174 (190)
431 PRK12344 putative alpha-isopro 37.2 6.8E+02 0.015 28.6 19.2 162 264-429 23-200 (524)
432 cd04735 OYE_like_4_FMN Old yel 37.0 4.3E+02 0.0092 28.4 12.0 25 263-287 132-164 (353)
433 PRK09140 2-dehydro-3-deoxy-6-p 36.9 1.9E+02 0.0041 28.8 8.7 64 271-339 115-181 (206)
434 TIGR00735 hisF imidazoleglycer 36.6 1.4E+02 0.0031 30.3 7.9 83 270-368 158-253 (254)
435 cd01563 Thr-synth_1 Threonine 36.5 5.2E+02 0.011 27.0 12.5 116 357-498 85-214 (324)
436 PLN02535 glycolate oxidase 36.5 90 0.002 34.0 6.7 68 271-342 235-312 (364)
437 COG0042 tRNA-dihydrouridine sy 36.4 88 0.0019 33.4 6.6 67 274-343 159-234 (323)
438 TIGR00259 thylakoid_BtpA membr 35.9 3.2E+02 0.007 28.4 10.3 94 270-372 92-207 (257)
439 cd07940 DRE_TIM_IPMS 2-isoprop 35.8 5E+02 0.011 26.6 17.5 156 264-430 16-186 (268)
440 PF04055 Radical_SAM: Radical 35.7 2.1E+02 0.0046 25.3 8.2 53 100-152 76-138 (166)
441 PRK00230 orotidine 5'-phosphat 35.6 96 0.0021 31.3 6.4 39 389-427 190-228 (230)
442 PRK02412 aroD 3-dehydroquinate 35.6 5E+02 0.011 26.5 13.4 144 266-426 93-249 (253)
443 PRK15116 sulfur acceptor prote 35.6 87 0.0019 32.6 6.2 86 295-395 86-172 (268)
444 COG0434 SgcQ Predicted TIM-bar 35.6 1.5E+02 0.0032 30.8 7.6 142 389-559 37-190 (263)
445 cd04738 DHOD_2_like Dihydrooro 35.4 5.6E+02 0.012 27.1 14.5 90 307-409 127-239 (327)
446 PRK08072 nicotinate-nucleotide 35.2 77 0.0017 33.2 5.8 66 265-338 193-261 (277)
447 PRK06106 nicotinate-nucleotide 35.2 87 0.0019 32.9 6.2 62 269-338 203-267 (281)
448 cd03316 MR_like Mandelate race 35.0 1.9E+02 0.0041 30.6 8.9 63 100-166 126-197 (357)
449 PF04452 Methyltrans_RNA: RNA 34.8 1.4E+02 0.0031 29.8 7.5 120 211-339 16-157 (225)
450 PRK12857 fructose-1,6-bisphosp 34.8 4E+02 0.0086 28.1 11.0 121 295-429 63-201 (284)
451 PRK05835 fructose-bisphosphate 34.8 4.9E+02 0.011 27.8 11.7 118 308-429 74-203 (307)
452 COG1157 FliI Flagellar biosynt 34.4 48 0.001 36.8 4.2 120 297-433 243-366 (441)
453 PRK01130 N-acetylmannosamine-6 34.4 1E+02 0.0023 30.4 6.4 64 271-339 130-204 (221)
454 PLN02417 dihydrodipicolinate s 34.0 2.9E+02 0.0063 28.6 9.9 96 325-429 29-126 (280)
455 PRK05286 dihydroorotate dehydr 34.0 4.9E+02 0.011 27.9 11.8 52 350-409 190-248 (344)
456 TIGR03425 urea_degr_2 urea car 33.9 1E+02 0.0022 31.7 6.2 54 178-231 14-81 (233)
457 TIGR01108 oadA oxaloacetate de 33.8 8.1E+02 0.018 28.5 18.4 151 264-429 17-191 (582)
458 TIGR00046 RNA methyltransferas 33.6 1.9E+02 0.0041 29.3 8.2 113 211-330 31-159 (240)
459 TIGR01124 ilvA_2Cterm threonin 33.6 5.4E+02 0.012 29.2 12.6 155 309-499 32-204 (499)
460 PRK01222 N-(5'-phosphoribosyl) 33.5 1.4E+02 0.0031 29.7 7.1 68 268-336 11-83 (210)
461 PRK08255 salicylyl-CoA 5-hydro 33.4 5.4E+02 0.012 30.7 13.1 131 264-406 540-717 (765)
462 PLN00011 cysteine synthase 33.3 6E+02 0.013 26.8 13.6 123 356-499 83-212 (323)
463 PRK12475 thiamine/molybdopteri 33.3 2E+02 0.0043 30.9 8.7 65 296-371 83-147 (338)
464 TIGR01858 tag_bisphos_ald clas 33.2 4.5E+02 0.0097 27.7 11.1 131 292-429 57-199 (282)
465 PRK02991 D-serine dehydratase; 33.2 6.3E+02 0.014 28.2 12.9 120 356-499 171-306 (441)
466 PF00582 Usp: Universal stress 33.2 1.2E+02 0.0026 25.8 5.9 39 455-494 91-139 (140)
467 PRK00568 carbon storage regula 33.1 93 0.002 26.5 4.8 29 213-242 7-35 (76)
468 PRK13585 1-(5-phosphoribosyl)- 33.1 5E+02 0.011 25.8 13.4 129 268-416 86-232 (241)
469 PF00455 DeoRC: DeoR C termina 32.9 1.4E+02 0.003 28.3 6.7 62 451-515 6-68 (161)
470 COG0800 Eda 2-keto-3-deoxy-6-p 32.9 3.2E+02 0.0068 27.7 9.4 104 284-405 16-132 (211)
471 cd04740 DHOD_1B_like Dihydroor 32.8 5.7E+02 0.012 26.3 13.0 90 307-408 88-188 (296)
472 cd03332 LMO_FMN L-Lactate 2-mo 32.8 1.2E+02 0.0025 33.4 6.9 65 270-341 264-341 (383)
473 cd08564 GDPD_GsGDE_like Glycer 32.7 5.4E+02 0.012 26.1 11.5 55 352-422 210-264 (265)
474 PRK05437 isopentenyl pyrophosp 32.6 6.3E+02 0.014 27.2 12.4 134 258-406 125-290 (352)
475 PF04312 DUF460: Protein of un 32.6 42 0.00091 31.7 3.0 34 354-395 65-98 (138)
476 PF10087 DUF2325: Uncharacteri 32.4 1.7E+02 0.0036 25.2 6.6 69 293-371 10-81 (97)
477 PRK11572 copper homeostasis pr 32.4 5.9E+02 0.013 26.4 14.1 141 269-431 10-170 (248)
478 cd00956 Transaldolase_FSA Tran 32.4 91 0.002 31.2 5.6 62 270-337 112-185 (211)
479 PRK07107 inosine 5-monophospha 32.4 78 0.0017 35.9 5.7 50 99-149 230-279 (502)
480 COG0031 CysK Cysteine synthase 32.1 6.5E+02 0.014 26.8 13.6 205 309-537 26-260 (300)
481 TIGR00260 thrC threonine synth 32.0 3.7E+02 0.0081 28.1 10.5 80 454-535 58-142 (328)
482 cd04724 Tryptophan_synthase_al 31.8 4.8E+02 0.01 26.4 10.9 117 271-406 95-215 (242)
483 TIGR01304 IMP_DH_rel_2 IMP deh 31.8 72 0.0016 34.8 5.1 66 269-338 198-285 (369)
484 PRK07535 methyltetrahydrofolat 31.7 89 0.0019 32.3 5.6 54 115-171 29-82 (261)
485 COG2145 ThiM Hydroxyethylthiaz 31.7 82 0.0018 32.8 5.2 52 309-370 39-90 (265)
486 PRK02083 imidazole glycerol ph 31.7 5.5E+02 0.012 25.9 13.4 157 361-537 70-249 (253)
487 TIGR01370 cysRS possible cyste 31.6 5E+02 0.011 27.8 11.2 92 273-370 153-269 (315)
488 PRK08328 hypothetical protein; 31.6 2.5E+02 0.0054 28.3 8.7 63 298-371 87-149 (231)
489 COG1862 YajC Preprotein transl 31.5 58 0.0013 29.0 3.5 42 206-248 38-79 (97)
490 TIGR00683 nanA N-acetylneurami 31.4 3.5E+02 0.0075 28.2 9.9 96 324-429 27-126 (290)
491 PRK10550 tRNA-dihydrouridine s 31.3 1E+02 0.0023 32.7 6.1 64 274-343 155-230 (312)
492 PRK12656 fructose-6-phosphate 31.3 1.5E+02 0.0032 30.2 6.8 60 273-338 119-190 (222)
493 COG0391 Uncharacterized conser 31.2 3.3E+02 0.0072 29.3 9.8 88 315-409 174-268 (323)
494 COG0646 MetH Methionine syntha 31.2 1.8E+02 0.0039 31.1 7.6 63 99-163 113-193 (311)
495 PRK06543 nicotinate-nucleotide 31.1 1E+02 0.0022 32.5 5.8 63 268-338 201-266 (281)
496 PRK13957 indole-3-glycerol-pho 31.1 1.4E+02 0.0031 30.8 6.8 71 268-343 159-236 (247)
497 PRK12346 transaldolase A; Prov 31.1 92 0.002 33.3 5.6 51 274-330 164-235 (316)
498 PRK03910 D-cysteine desulfhydr 31.1 4.6E+02 0.01 27.6 11.0 128 356-498 80-220 (331)
499 PRK05597 molybdopterin biosynt 31.0 2.3E+02 0.0049 30.6 8.7 65 296-371 85-149 (355)
500 cd00537 MTHFR Methylenetetrahy 30.8 1.2E+02 0.0026 31.1 6.4 69 267-336 147-215 (274)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=1.3e-132 Score=1081.35 Aligned_cols=467 Identities=46% Similarity=0.711 Sum_probs=438.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC
Q 008319 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (570)
Q Consensus 98 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~ 177 (570)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++||+||||||||+|.+.+
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --ceeecCCCEEEEEEecCCC--CccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCccc
Q 008319 178 --PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHL 253 (570)
Q Consensus 178 --~i~l~~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgI 253 (570)
++.|++||.|+|+.+...+ +.+.++++|++|++++++||.||+|||+|.|+|++++++.++|+|.+||.|+++|||
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv 182 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL 182 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence 6999999999999764334 357899999999999999999999999999999999999999999999999999999
Q ss_pred cc-------CCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCC--CceEEEeecCcchhhhH
Q 008319 254 NV-------RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNL 324 (570)
Q Consensus 254 n~-------p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~--~i~IiaKIEt~~gv~Nl 324 (570)
|+ ||+.+++|.||+||++||+|++++++|||++|||++++||.++|++|.+.|. +++||||||+++|++||
T Consensus 183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl 262 (509)
T PLN02762 183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL 262 (509)
T ss_pred eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998875 79999999999999999
Q ss_pred HHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEE
Q 008319 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (570)
Q Consensus 325 deIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (570)
+||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++|.|||||++||||||+||+||+|
T Consensus 263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM 342 (509)
T PLN02762 263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM 342 (509)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCC-----CcccCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHH
Q 008319 405 LSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPP-----TQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSM 478 (570)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~-----~~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~t 478 (570)
||+|||+|+||+|||++|++||+++|+++.+...+. ........+..+++|.+|+++|+.++| +||+||+||+|
T Consensus 343 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~t 422 (509)
T PLN02762 343 LSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHM 422 (509)
T ss_pred EcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHH
Confidence 999999999999999999999999998642211111 111111125679999999999999999 99999999999
Q ss_pred HHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCC
Q 008319 479 AVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQE 558 (570)
Q Consensus 479 A~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G 558 (570)
|+++|||||.+||||+|++++++|+|+|+|||+|++.++..+.+++++.++++++++|++++||.||+++|. | + +|
T Consensus 423 A~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~GD~VVv~~g~--~-~-~g 498 (509)
T PLN02762 423 ASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIKSGDLVIAVSDL--T-P-SS 498 (509)
T ss_pred HHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--C-C-CC
Confidence 999999999999999999999999999999999999988889999999999999999999999999999995 4 3 89
Q ss_pred CccEEEEEEec
Q 008319 559 STHHIQVRKVQ 569 (570)
Q Consensus 559 ~tn~I~V~~V~ 569 (570)
+||+|+|++|+
T Consensus 499 ~tn~i~v~~v~ 509 (509)
T PLN02762 499 MLQSIQVRNVP 509 (509)
T ss_pred CceEEEEEEcC
Confidence 99999999985
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-132 Score=1078.99 Aligned_cols=472 Identities=37% Similarity=0.576 Sum_probs=444.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccC
Q 008319 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (570)
Q Consensus 96 ~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~ 175 (570)
..+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++..+++++|++||+|||||+|.+
T Consensus 35 ~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~ 114 (513)
T PTZ00066 35 LRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFL 114 (513)
T ss_pred ccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeeccc
Confidence 45899999999999999999999999999999999999999999999999999999996339999999999999999999
Q ss_pred CC--ceeecCCCEEEEEEe-cCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcc
Q 008319 176 PQ--PIILKEGQEFNFTIK-RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (570)
Q Consensus 176 ~~--~i~l~~G~~v~lt~~-~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~Kg 252 (570)
++ ++.|++|+.++|+.+ ...++++.++++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++||
T Consensus 115 ~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kg 194 (513)
T PTZ00066 115 KNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKN 194 (513)
T ss_pred CCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCcc
Confidence 75 699999999999987 345677899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccCCCCCChhhHHHh-hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhC
Q 008319 253 LNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS 331 (570)
Q Consensus 253 In~p~~~~~lp~lt~kD~~dI-~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~s 331 (570)
||+||+.+++|.||++|++|| +|++++|+|||++|||++++||.++|++|++.|.+++|||||||++|++|||||++++
T Consensus 195 vnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~s 274 (513)
T PTZ00066 195 MNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAES 274 (513)
T ss_pred cccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhc
Confidence 999999999999999999998 8999999999999999999999999999999888999999999999999999999999
Q ss_pred CEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC
Q 008319 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (570)
Q Consensus 332 DgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (570)
|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++|.|||||++||||||.||+||+|||+|||+
T Consensus 275 DGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~ 354 (513)
T PTZ00066 275 DGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETAN 354 (513)
T ss_pred CEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc-C-CCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCC
Q 008319 412 GKFPLKAVKVMHTVALRTESSLPVSITPPTQFS-A-HKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPS 488 (570)
Q Consensus 412 G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~-~-~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~ 488 (570)
|+||+|||++|++||+++|+.+++..++..... . ...+..+++|.+|+++|+.+++ +||+||+||+||+++|||||.
T Consensus 355 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~ 434 (513)
T PTZ00066 355 GKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPS 434 (513)
T ss_pred CcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCC
Confidence 999999999999999999987654333322111 0 1114578999999999999999 999999999999999999999
Q ss_pred CeEEEEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 008319 489 STIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 568 (570)
Q Consensus 489 ~pIiavt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V 568 (570)
|||||+|++++++|+|+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|. |.+..|+||+++|++|
T Consensus 435 ~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~g~--~~~~~g~tn~irv~~v 512 (513)
T PTZ00066 435 CTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVESGDSAIAVHGV--KEEVAGSSNLMKVVKI 512 (513)
T ss_pred CCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCeEEEEEEc
Confidence 99999999999999999999999999988889999999999999999999999999999995 6567799999999998
Q ss_pred c
Q 008319 569 Q 569 (570)
Q Consensus 569 ~ 569 (570)
+
T Consensus 513 ~ 513 (513)
T PTZ00066 513 P 513 (513)
T ss_pred C
Confidence 6
No 3
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.6e-131 Score=1080.64 Aligned_cols=518 Identities=79% Similarity=1.150 Sum_probs=487.9
Q ss_pred ccceeeeeeccCCCCccccchhhhhhhhccCCCCCCCCCCccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEE
Q 008319 51 RFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARL 130 (570)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~Ri 130 (570)
+.+...++++|+|++ .+++++..+.+..++.+..+.+.+|+.|..+|||||||||||+|+++|+|++|+++|||+|||
T Consensus 64 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~Rl 141 (581)
T PLN02623 64 SQETEVIPVSPEDGG--ANFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARL 141 (581)
T ss_pred ccCcceeeccccccc--cccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEE
Confidence 344467889999999 578898888888888888899999999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCCceeecCCCEEEEEEecCCCCccEEEeccCCccc
Q 008319 131 NMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVN 210 (570)
Q Consensus 131 N~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~ 210 (570)
|||||++++|+++|+++|+++++.++++++|++||||||||+|.+++++.|++||.|+|+.+...++++.++++|++|++
T Consensus 142 NfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~l~~ 221 (581)
T PLN02623 142 NMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVN 221 (581)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHHHHh
Confidence 99999999999999999999999755899999999999999999988999999999999988667888899999999999
Q ss_pred ccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcccccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCC
Q 008319 211 DVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVK 290 (570)
Q Consensus 211 ~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~ 290 (570)
++++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+||+.+++|.||+||++||+|++++++|||++|||+
T Consensus 222 ~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr 301 (581)
T PLN02623 222 DVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVK 301 (581)
T ss_pred hCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
+++||+++++|++..|.++.+|+||||++||+|||||++.+|||||||||||+++|+++|+.+|++|+++|+++|||+|+
T Consensus 302 ~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpviv 381 (581)
T PLN02623 302 DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIV 381 (581)
T ss_pred CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCCh
Q 008319 371 ATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHM 450 (570)
Q Consensus 371 aTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 450 (570)
||||||||++++.|||||++|++|++.+|+|++||++||+.|+||+|||++|++||.++|+.+++...+..+....+.+.
T Consensus 382 aTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 461 (581)
T PLN02623 382 ATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHM 461 (581)
T ss_pred ECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999986544322211111122356
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHH
Q 008319 451 GDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIK 530 (570)
Q Consensus 451 ~~~ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~ 530 (570)
.+++|.+|+++|+.++++||+||+||+||+++|||||.|||||+|++++++|||+|+|||+|+++++..+.+++++.+++
T Consensus 462 ~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~ 541 (581)
T PLN02623 462 SEMFAFHATMMANTLGTSIIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALS 541 (581)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEecC
Q 008319 531 LLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQG 570 (570)
Q Consensus 531 ~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V~~ 570 (570)
++++.|++++||.||+++|+.+|.|..|+||+++|++|.+
T Consensus 542 ~~~~~g~v~~GD~vviv~g~~~p~~~~g~tn~i~V~~v~~ 581 (581)
T PLN02623 542 LLLNKGMVKEGEEVALVQSGRQPIWRSESTHHIQVRKVQA 581 (581)
T ss_pred HHHHcCCCCCCCEEEEEeccCCCCCCCCCCeEEEEEEeeC
Confidence 9999999999999999997555778889999999999854
No 4
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=5.6e-130 Score=1054.77 Aligned_cols=468 Identities=35% Similarity=0.581 Sum_probs=442.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCC
Q 008319 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (570)
Q Consensus 97 ~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~ 176 (570)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-ceeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCccccc
Q 008319 177 Q-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (570)
Q Consensus 177 ~-~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn~ 255 (570)
+ ++.|++||.|+|+.+...++++.++++|++|++++++||+||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~ 161 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSL 161 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCCcccc
Confidence 5 699999999999988656788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEE
Q 008319 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM 335 (570)
Q Consensus 256 p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgIm 335 (570)
||+.+++|.||+||++||+|++++|+|||++|||++++||.++|+++. .++.|||||||++|++|||||++++||||
T Consensus 162 p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIEt~eav~nldeI~~~~DgIm 238 (476)
T PRK06247 162 PGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQAIDRLEAIVEASDAIM 238 (476)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEECCHHHHHhHHHHHHHcCEEE
Confidence 999999999999999999999999999999999999999999999994 47999999999999999999999999999
Q ss_pred EcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCH
Q 008319 336 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (570)
Q Consensus 336 IgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (570)
|||||||+++|+++|+.+||+|++.|+++|||+|+||||||||+++|.|||||++|||||++||+|++|||+|||+|+||
T Consensus 239 VaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yP 318 (476)
T PRK06247 239 VARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYP 318 (476)
T ss_pred EccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCeEEEE
Q 008319 416 LKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAF 494 (570)
Q Consensus 416 ~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~pIiav 494 (570)
+|||++|++||+++|+.+++..++.......+.+..+++|.+|+++|+.+++ +||+||+||+||+++|||||.|||||+
T Consensus 319 veaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~ 398 (476)
T PRK06247 319 VEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLPILAL 398 (476)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEE
Confidence 9999999999999998754432222111111135678999999999999999 999999999999999999999999999
Q ss_pred eCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEecC
Q 008319 495 TNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQG 570 (570)
Q Consensus 495 t~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V~~ 570 (570)
|++++++|+|+|+|||+|++++...+.++++..+++++++.|++++||.||+++|. |.+..|+||+++|++|++
T Consensus 399 t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~--~~~~~g~tn~i~v~~v~~ 472 (476)
T PRK06247 399 TPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGFYKRGDRVVIVAGV--PPGTPGSTNMLRIAYIGE 472 (476)
T ss_pred CCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCeEEEEEEeCC
Confidence 99999999999999999999988889999999999999999999999999999995 667789999999999853
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=8.1e-130 Score=1054.40 Aligned_cols=465 Identities=39% Similarity=0.638 Sum_probs=439.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC
Q 008319 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (570)
Q Consensus 98 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~ 177 (570)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++|+++|+++++++ ++++|++||+|||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTG-KKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCceeccccCC
Confidence 5799999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --ceeecCCCEEEEEEec-CCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcccc
Q 008319 178 --PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (570)
Q Consensus 178 --~i~l~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn 254 (570)
++.|++|+.++|+.++ ..++.+.++++|++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+|+||||
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn 159 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVN 159 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEEECCEecCCCcee
Confidence 5999999999999774 3466788999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcC-CCceEEEeecCcchhhhHHHHHHhCCE
Q 008319 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDG 333 (570)
Q Consensus 255 ~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~sDg 333 (570)
+||+.+++|.||+||++||+|++++|+|||++|||++++||.++++|+.+.| .++.|||||||++|++|||||++++||
T Consensus 160 ~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 160 LPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred ccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCC
Q 008319 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (570)
Q Consensus 334 ImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~ 413 (570)
|||||||||+|+|+++|+.+||+|++.|+++|||||+||||||||+++|.|||||++|||||+.||+||+|||+|||+|+
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCeEE
Q 008319 414 FPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIF 492 (570)
Q Consensus 414 yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~pIi 492 (570)
||+|||++|++||+++|+.+.+. + .........+..+++|.+|+++|+++++ +||+||+||+||+++|||||.+|||
T Consensus 320 yPveaV~~m~~I~~~~E~~~~~~-~-~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIi 397 (470)
T PRK09206 320 YPLEAVSIMATICERTDRVMNSR-L-ESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATIL 397 (470)
T ss_pred CHHHHHHHHHHHHHHHHhhcchh-h-hhhccccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEE
Confidence 99999999999999999865432 1 1111011135789999999999999999 9999999999999999999999999
Q ss_pred EEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 008319 493 AFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 568 (570)
Q Consensus 493 avt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V 568 (570)
|+|++++++|+|+|+|||+|++++...+.++++..+++++++.|++++||.||+++|. + ...|+||+++|+++
T Consensus 398 a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~--~-~~~g~tn~i~v~~~ 470 (470)
T PRK09206 398 ALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGDVVVMVSGA--L-VPSGTTNTASVHVL 470 (470)
T ss_pred EECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--C-CCCCCCeEEEEEEC
Confidence 9999999999999999999999988788999999999999999999999999999995 4 56799999999863
No 6
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=5.2e-129 Score=1053.50 Aligned_cols=466 Identities=38% Similarity=0.586 Sum_probs=437.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccC
Q 008319 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (570)
Q Consensus 96 ~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~ 175 (570)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.+ ++++||+||||||||+|.+
T Consensus 18 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g-~~i~Il~Dl~GPkIR~g~~ 96 (511)
T PLN02461 18 LRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTG-ILCAVMLDTKGPEIRTGFL 96 (511)
T ss_pred ccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEeeCCCCceecccc
Confidence 358899999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC--ceeecCCCEEEEEEec-CCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEe--CCeEEEEEEeCcEeccC
Q 008319 176 PQ--PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT--KDLVKCIVVDGGELKSR 250 (570)
Q Consensus 176 ~~--~i~l~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~--~~~i~~~v~~gG~l~s~ 250 (570)
.+ ++.|++||.++|+.+. ..++++.|+++|++|++.+++||.||+|||+|.|+|++++ ++.++|+|.+||.|+|+
T Consensus 97 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~ 176 (511)
T PLN02461 97 KDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGER 176 (511)
T ss_pred CCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCC
Confidence 75 5999999999999873 3467789999999999999999999999999999999987 68999999999999999
Q ss_pred cccccCCCccCCCCCChhhHHHh-hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH
Q 008319 251 RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS 329 (570)
Q Consensus 251 KgIn~p~~~~~lp~lt~kD~~dI-~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~ 329 (570)
||||+||+.+++|.||+||++|| +|++++++|||++|||++++||.++|+++.+.+.+++|||||||++|++||+||++
T Consensus 177 Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~ 256 (511)
T PLN02461 177 KNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILA 256 (511)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999998 79999999999999999999999999999988889999999999999999999999
Q ss_pred hCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccc
Q 008319 330 ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (570)
Q Consensus 330 ~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (570)
++|||||||||||+|+|+++||.+||+||+.|+++|||||+||||||||+++|.|||||++|||||+.||+||+|||+||
T Consensus 257 ~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ET 336 (511)
T PLN02461 257 ESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGET 336 (511)
T ss_pred hcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc-C-CCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcC
Q 008319 410 AHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS-A-HKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYR 486 (570)
Q Consensus 410 A~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~-~-~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~R 486 (570)
|+|+||+|||++|++||++||+.+++..+|..... . ...+..+++|.+|+++|+++++ +||+||+||+||+++||||
T Consensus 337 A~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~R 416 (511)
T PLN02461 337 AAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYR 416 (511)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhC
Confidence 99999999999999999999987655433322211 0 1124679999999999999999 9999999999999999999
Q ss_pred CCCeEEEEeCC-------------HHHHHHhccccCcEEEEecC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 008319 487 PSSTIFAFTNQ-------------ERIKQRLVLYQGVMPIYMQF------SDDVEETFSRAIKLLMDKNLVTKGEFVTLV 547 (570)
Q Consensus 487 P~~pIiavt~~-------------~~taRrL~L~rGV~Pil~~~------~~d~d~~i~~al~~lke~Gllk~GD~VVvv 547 (570)
|.|||||+|++ ++++|||+|+|||+|++++. ..+.+++++.|++++++.|++++||.||++
T Consensus 417 P~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv 496 (511)
T PLN02461 417 PAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVAL 496 (511)
T ss_pred CCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEE
Confidence 99999999966 99999999999999998764 568899999999999999999999999999
Q ss_pred ecCCCCCCCCCCccEEEEEEec
Q 008319 548 QSGAQPIWRQESTHHIQVRKVQ 569 (570)
Q Consensus 548 ~G~~~p~~~~G~tn~I~V~~V~ 569 (570)
+| .|+||+++|.+|+
T Consensus 497 ~~-------~g~tn~i~v~~v~ 511 (511)
T PLN02461 497 HR-------IGGASVIKILTVK 511 (511)
T ss_pred ec-------CCCCcEEEEEEeC
Confidence 88 3789999999874
No 7
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-129 Score=1043.13 Aligned_cols=470 Identities=44% Similarity=0.703 Sum_probs=444.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccC
Q 008319 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (570)
Q Consensus 96 ~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~ 175 (570)
.++|||||||||||+++++|+|++|+++||||||||||||++++|.+.++++|+++++++ +|++||+||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~-~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLG-RPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhC-CceEEEEcCCCCcceeEec
Confidence 358999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-ceeecCCCEEEEEEecC--CCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcc
Q 008319 176 PQ-PIILKEGQEFNFTIKRG--VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252 (570)
Q Consensus 176 ~~-~i~l~~G~~v~lt~~~~--~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~Kg 252 (570)
.+ .+.|++|+.|+|+.+.. .++.+.|+++|++|+++|++||+||+|||+++|+|.+++++.+.|+|.+||.|++|||
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~~v~~~v~n~G~l~~~Kg 160 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKG 160 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCCEEEEEEEeCCCccCCCc
Confidence 76 69999999999998865 4456899999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCC-ceEEEeecCcchhhhHHHHHHhC
Q 008319 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISAS 331 (570)
Q Consensus 253 In~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~-i~IiaKIEt~~gv~NldeIl~~s 331 (570)
||+||..+++|+||+||++||+|++++|+|||++|||++++|+.++|++|.+.+.. ++||||||+++||+|||||+++|
T Consensus 161 vN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~S 240 (477)
T COG0469 161 VNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEAS 240 (477)
T ss_pred eecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999877665 99999999999999999999999
Q ss_pred CEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC
Q 008319 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (570)
Q Consensus 332 DgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (570)
|||||||||||+|+|+++||.+||+||++||++|||||+||||||||+.+|.|||||++|||||+.||+|++|||+|||.
T Consensus 241 DGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~ 320 (477)
T COG0469 241 DGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAA 320 (477)
T ss_pred CceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCe
Q 008319 412 GKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSST 490 (570)
Q Consensus 412 G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~p 490 (570)
|+||+|||++|++||.++|+.+.+.+++.........+..++++.+++.+|+.+++ +|+++|.||+||+++|||||.+|
T Consensus 321 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~p 400 (477)
T COG0469 321 GKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAP 400 (477)
T ss_pred CCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCc
Confidence 99999999999999999999886322222111111245789999999999999999 99999999999999999999999
Q ss_pred EEEEeCCHHHHHHhccccCcEEEEec-CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 008319 491 IFAFTNQERIKQRLVLYQGVMPIYMQ-FSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 568 (570)
Q Consensus 491 Iiavt~~~~taRrL~L~rGV~Pil~~-~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V 568 (570)
|||+|++++++|+|+|+|||+|++++ +..+.++++..+++.+.+.|+++.||.||+++|. |++..|+||+++|++|
T Consensus 401 Iia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G~--~~~~~G~tn~ikv~~v 477 (477)
T COG0469 401 IIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGLVKKGDLVVITAGV--PMGTVGTTNTIKVLTV 477 (477)
T ss_pred EEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHHHhcCcccCCCEEEEecCc--ccccCCCceeEEEEeC
Confidence 99999999999999999999999997 5889999999999999999999999999999995 8889999999999875
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=1.9e-127 Score=1061.83 Aligned_cols=468 Identities=39% Similarity=0.644 Sum_probs=443.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCC
Q 008319 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (570)
Q Consensus 97 ~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~ 176 (570)
.+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.++
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~-~~i~i~~Dl~GpkiR~g~~~ 84 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLG-KTVGILQDLQGPKIRLGRFE 84 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCEEEEeeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-ceeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEe--CCeEEEEEEeCcEeccCccc
Q 008319 177 Q-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT--KDLVKCIVVDGGELKSRRHL 253 (570)
Q Consensus 177 ~-~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~--~~~i~~~v~~gG~l~s~KgI 253 (570)
+ ++.|++||.|+|+.+...++++.|+++|++|++.+++||.||+|||+|.|+|++++ ++.++|+|++||.|+++|||
T Consensus 85 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kgv 164 (590)
T PRK06354 85 DGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGV 164 (590)
T ss_pred CCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCcc
Confidence 5 69999999999998865678889999999999999999999999999999999988 89999999999999999999
Q ss_pred ccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHh-cCCCceEEEeecCcchhhhHHHHHHhCC
Q 008319 254 NVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-CNADIHVIVKIESADSIPNLHSIISASD 332 (570)
Q Consensus 254 n~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~-~~~~i~IiaKIEt~~gv~NldeIl~~sD 332 (570)
|+||+.+++|.||+||++||+|++++++|||++|||++++||.++++|+++ .+.+++|||||||++|++|||||++++|
T Consensus 165 n~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~D 244 (590)
T PRK06354 165 NFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCD 244 (590)
T ss_pred cccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999954 5889999999999999999999999999
Q ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCC
Q 008319 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (570)
Q Consensus 333 gImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (570)
||||||||||+++|.++|+.+||+|+++|+++|||||+||||||||+++|.|||||++|||||++||+||+|||+|||+|
T Consensus 245 gImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G 324 (590)
T PRK06354 245 GLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAG 324 (590)
T ss_pred EEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCeE
Q 008319 413 KFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTI 491 (570)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~pI 491 (570)
+||++||++|++||+++|+.+++..++..... ...+..+++|.+|+++|+++++ +||+||+||+||+++|||||.|||
T Consensus 325 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI 403 (590)
T PRK06354 325 DYPVEAVQTMATIAVRIEKDLPYRDILSKRPE-FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPI 403 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhhhhhhccc-cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCE
Confidence 99999999999999999987655433222111 1235678999999999999999 999999999999999999999999
Q ss_pred EEEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 008319 492 FAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 568 (570)
Q Consensus 492 iavt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V 568 (570)
||+|++++++|||+|+|||+|++++...+.+++++.+++++++.|++++||.||+++|. |.+..|+||+++|++|
T Consensus 404 ~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~--~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 404 LAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVITAGT--LVGESGSTDLMKVHVV 478 (590)
T ss_pred EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CCCcCCCceeEEEEEe
Confidence 99999999999999999999999988888999999999999999999999999999994 6677899999999998
No 9
>PLN02765 pyruvate kinase
Probab=100.00 E-value=5e-127 Score=1038.40 Aligned_cols=463 Identities=28% Similarity=0.468 Sum_probs=430.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC
Q 008319 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (570)
Q Consensus 98 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~ 177 (570)
.|||||||||||+|+++|+|++|+++||||||||||||++|+|+++|+++|+++++.+ ++++||+||||||||+|.+++
T Consensus 27 ~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 105 (526)
T PLN02765 27 PALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTK-KLCAVMLDTVGPELQVINKTE 105 (526)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEecCCCCceeeeecCC
Confidence 3459999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred -ceeecCCCEEEEEEecC-CCCccEEEeccCCcccccccCCEEEEeCC--------eeEEEEEEEeCCeEEEEEEeCcEe
Q 008319 178 -PIILKEGQEFNFTIKRG-VSTEDTVSVNYDDFVNDVEVGDILLVDGG--------MMSLAVKSKTKDLVKCIVVDGGEL 247 (570)
Q Consensus 178 -~i~l~~G~~v~lt~~~~-~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG--------~i~l~V~~~~~~~i~~~v~~gG~l 247 (570)
++.|++|+.++|+.+.. .++.+.|+++|++|++.+++||+||+||| +|.|+|++++++.++|+|++||.|
T Consensus 106 ~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L 185 (526)
T PLN02765 106 KPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATL 185 (526)
T ss_pred CcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEECCEEEEEEEeCcEE
Confidence 69999999999998743 56778999999999999999999999988 899999999999999999999999
Q ss_pred ccC-cccccCCCccCCCCCChhhHHHh-hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCC-CceEEEeecCcchhhhH
Q 008319 248 KSR-RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNL 324 (570)
Q Consensus 248 ~s~-KgIn~p~~~~~lp~lt~kD~~dI-~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IiaKIEt~~gv~Nl 324 (570)
+++ ||||+||+.+++|.||+||++|| .|++++++|||++|||++++||.++|+++.+.|. +++||||||+++|++||
T Consensus 186 ~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl 265 (526)
T PLN02765 186 AGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHF 265 (526)
T ss_pred CCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH
Confidence 994 89999999999999999999999 6999999999999999999999999999998875 89999999999999999
Q ss_pred HHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEE
Q 008319 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (570)
Q Consensus 325 deIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (570)
+||++++|||||||||||+|+|+++||.+||+||++|+++|||||+ |||||||+++|.|||||++|||||+.||+|++|
T Consensus 266 ~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavM 344 (526)
T PLN02765 266 DEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAIL 344 (526)
T ss_pred HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999999999999999999999995 999999999999999999999999999999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--CCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHH
Q 008319 405 LSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVI 481 (570)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ 481 (570)
||+|||+|+||++||++|++||+++|+.+++...+..... ..+.+..+++|.+|+++|+.++| +|||||+||+||++
T Consensus 345 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~ 424 (526)
T PLN02765 345 LGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARL 424 (526)
T ss_pred ecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHH
Confidence 9999999999999999999999999986544322221111 00113468999999999999999 99999999999999
Q ss_pred HHhcCCCCeEEEEe-CC------------HHHHHHhccccCcEEEEecCCCC-------HHHHHHHHHHHHHHcCCCCCC
Q 008319 482 LSHYRPSSTIFAFT-NQ------------ERIKQRLVLYQGVMPIYMQFSDD-------VEETFSRAIKLLMDKNLVTKG 541 (570)
Q Consensus 482 ls~~RP~~pIiavt-~~------------~~taRrL~L~rGV~Pil~~~~~d-------~d~~i~~al~~lke~Gllk~G 541 (570)
+|||||.|||||+| ++ ++++|||+|+|||+|++++...+ .+.++..+++++++.|++++|
T Consensus 425 isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~G 504 (526)
T PLN02765 425 IAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKSH 504 (526)
T ss_pred HHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 77 89999999999999998865444 577899999999999999999
Q ss_pred CEEEEEecCCCCCCCCCCccEEEEEEec
Q 008319 542 EFVTLVQSGAQPIWRQESTHHIQVRKVQ 569 (570)
Q Consensus 542 D~VVvv~G~~~p~~~~G~tn~I~V~~V~ 569 (570)
|.||++++ .|+||+++|..|+
T Consensus 505 D~vvv~~~-------~g~tn~i~v~~v~ 525 (526)
T PLN02765 505 DRVVVCQK-------VGDSSVVKIIELD 525 (526)
T ss_pred CEEEEEec-------CCCCceEEEEEcC
Confidence 99999975 4889999999886
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.3e-126 Score=1034.62 Aligned_cols=467 Identities=43% Similarity=0.674 Sum_probs=440.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC
Q 008319 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (570)
Q Consensus 98 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~ 177 (570)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++||+||||||||+|.+++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999999975
Q ss_pred --ceeecCCCEEEEEEec--CCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCC-eEEEEEEeCcEeccCcc
Q 008319 178 --PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKD-LVKCIVVDGGELKSRRH 252 (570)
Q Consensus 178 --~i~l~~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~-~i~~~v~~gG~l~s~Kg 252 (570)
++.|++||.|+|+.+. ..++.+.|+++|++|++.+++||.||+|||+|.|+|++++++ .++|+|.+||.|+++||
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kg 159 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKG 159 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCceEEEEEEeCeEEcCCCc
Confidence 5999999999999875 457778999999999999999999999999999999999998 99999999999999999
Q ss_pred cccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCC
Q 008319 253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD 332 (570)
Q Consensus 253 In~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sD 332 (570)
||+||..+++|.||+||++||+|++++|+|||++|||++++||+++|+|+++.|.++.+||||||++|++|||||++++|
T Consensus 160 in~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~D 239 (480)
T cd00288 160 VNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASD 239 (480)
T ss_pred eEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCC
Q 008319 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (570)
Q Consensus 333 gImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (570)
||||||||||+++|.++|+.+|++|+++|+++|||+|+||||||||+++|.|||||++||||||.||+|++|||+|||+|
T Consensus 240 gImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G 319 (480)
T cd00288 240 GIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKG 319 (480)
T ss_pred EEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccC--CCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCC
Q 008319 413 KFPLKAVKVMHTVALRTESSLPVSITPPTQFSA--HKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSS 489 (570)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~ 489 (570)
+||+|||++|++||+++|+.+++..++...... ...+..+++|.+|+++|+.+++ +||+||.||+||+++|+|||.+
T Consensus 320 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~ 399 (480)
T cd00288 320 KYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNA 399 (480)
T ss_pred CCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCC
Confidence 999999999999999999865443222211111 1114679999999999999999 9999999999999999999999
Q ss_pred eEEEEeCCHHHHHHhccccCcEEEEecCC-----CCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEE
Q 008319 490 TIFAFTNQERIKQRLVLYQGVMPIYMQFS-----DDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQ 564 (570)
Q Consensus 490 pIiavt~~~~taRrL~L~rGV~Pil~~~~-----~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~ 564 (570)
||||+|++++++|+|+|+|||+|++++.. .+.++++..+.++++++|++++||.||+++|. |. ..|+||+++
T Consensus 400 pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~--~~-~~~~tn~i~ 476 (480)
T cd00288 400 PIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQGW--PV-GSGSTNTMR 476 (480)
T ss_pred CEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CC-CCCCCeEEE
Confidence 99999999999999999999999988655 78899999999999999999999999999995 54 569999999
Q ss_pred EEEe
Q 008319 565 VRKV 568 (570)
Q Consensus 565 V~~V 568 (570)
|++|
T Consensus 477 v~~~ 480 (480)
T cd00288 477 ILTV 480 (480)
T ss_pred EEEC
Confidence 9875
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1.1e-124 Score=1016.18 Aligned_cols=452 Identities=42% Similarity=0.693 Sum_probs=430.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCC
Q 008319 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (570)
Q Consensus 97 ~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~ 176 (570)
++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ +|++|++||+|||||+|.+.
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~-~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLG-RPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeecccc
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999997
Q ss_pred C-ceeecCCCEEEEEEec-CCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcccc
Q 008319 177 Q-PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (570)
Q Consensus 177 ~-~i~l~~G~~v~lt~~~-~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn 254 (570)
+ ++.|++|+.|+|+.++ ..++++.|++||++|++++++||.||+|||+|.|+|++++++.++|+|++||.|+|+||||
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvn 160 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGIN 160 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEeCcEecCCceee
Confidence 6 6999999999999873 4577889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCC-CceEEEeecCcchhhhHHHHHHhCCE
Q 008319 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISASDG 333 (570)
Q Consensus 255 ~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IiaKIEt~~gv~NldeIl~~sDg 333 (570)
+||+.+++|.||++|.++|+|++++|+|+|++|||++++|++++++|+.+.|. ++.+||||||++|++|||||++++||
T Consensus 161 lp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 161 IPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred ccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 99999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCC
Q 008319 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (570)
Q Consensus 334 ImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~ 413 (570)
|||||||||+++|.++++.+|++|+++|+++|||+|+||||||||+++|.|||||++|||||++||+|++|||+|||+|+
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcC-C-cEEEEcCChHHHHHHHhcCCCCeE
Q 008319 414 FPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLN-T-PIIVFTRTGSMAVILSHYRPSSTI 491 (570)
Q Consensus 414 yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a-~Iiv~T~sG~tA~~ls~~RP~~pI 491 (570)
||++||++|++||+++|+.+++..++..+... ..+..+++|.+|+++|++++ + +|||||+||+||+++|||||.|||
T Consensus 321 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~-~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI 399 (465)
T PRK05826 321 YPVEAVEAMARICKGAEKEFSINLSKHRLDRQ-FDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPI 399 (465)
T ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhcccc-ccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCE
Confidence 99999999999999999876542121111111 13568999999999999999 9 999999999999999999999999
Q ss_pred EEEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC
Q 008319 492 FAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSG 550 (570)
Q Consensus 492 iavt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~ 550 (570)
||+|++++++|||+|+|||+|++++...+.++.+..|++++++.|++++||.||+++|.
T Consensus 400 ~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 400 FAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLEKGLVESGDLVVVTSGD 458 (465)
T ss_pred EEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 99999999999999999999999987788999999999999999999999999999995
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-118 Score=963.67 Aligned_cols=441 Identities=34% Similarity=0.545 Sum_probs=411.6
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC-ceeecCCCEEEEEEec---CCCCccE
Q 008319 125 MNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-PIILKEGQEFNFTIKR---GVSTEDT 200 (570)
Q Consensus 125 m~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~-~i~l~~G~~v~lt~~~---~~~~~~~ 200 (570)
||+||||||||++|+|+++++++|+++++++ ++++||+||||||||||.+.+ ++.|++||.++|+.+. ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~-~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELG-VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 7999999999999999999999999999998 999999999999999999975 6999999999999873 3467788
Q ss_pred EEeccCCcccccccCCEEEEeCCeeEEEEEEEeC-CeEEEEEEeCcEeccCcccccCCCccCCCCCChhhHHHhhhhhhc
Q 008319 201 VSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTK-DLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDN 279 (570)
Q Consensus 201 i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~-~~i~~~v~~gG~l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~~~ 279 (570)
|++||++|++.+++||.||+|||+|.|+|.++++ +.++|+|++||.|+++||||+||+.+++|.+|++|++||+|++++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~ 159 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQ 159 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHC
Confidence 9999999999999999999999999999999986 699999999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHH
Q 008319 280 QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIR 359 (570)
Q Consensus 280 gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~ 359 (570)
|+|+|++|||++++|+++++++++..|.++.|||||||++|++|||||++.+|||||||||||+++|.++|+.+||+|++
T Consensus 160 gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~ 239 (454)
T PTZ00300 160 GVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 239 (454)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008319 360 RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITP 439 (570)
Q Consensus 360 ~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 439 (570)
+|+++|||+|+||||||||+++|.|||||++|||||++||+|++|||+|||+|+||+|||++|++||++||+.+++..++
T Consensus 240 ~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~ 319 (454)
T PTZ00300 240 KCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFF 319 (454)
T ss_pred HHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865332222
Q ss_pred CCccc--CCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEec
Q 008319 440 PTQFS--AHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQ 516 (570)
Q Consensus 440 ~~~~~--~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~ 516 (570)
..... ....+..+++|.+|+++|+++++ +||+||+||+||+++|||||.|||||+|++++++|||+|+|||+|++++
T Consensus 320 ~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~l~~GV~p~~~~ 399 (454)
T PTZ00300 320 NSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFD 399 (454)
T ss_pred hhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEec
Confidence 22111 11114578999999999999999 9999999999999999999999999999999999999999999999886
Q ss_pred C-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEec
Q 008319 517 F-----SDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQ 569 (570)
Q Consensus 517 ~-----~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~V~ 569 (570)
. ..+.++++..+++++++.|++++||.||+++|. | +..|+||++||+.|.
T Consensus 400 ~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~--~-~~~g~tn~i~v~~~~ 454 (454)
T PTZ00300 400 AERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHAD--H-KVKGYANQTRIILVS 454 (454)
T ss_pred cccccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--C-CCCCCCCEEEEEEeC
Confidence 4 457889999999999999999999999999995 5 457999999999873
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=3.4e-118 Score=971.56 Aligned_cols=465 Identities=45% Similarity=0.744 Sum_probs=436.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC-
Q 008319 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ- 177 (570)
Q Consensus 99 r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~- 177 (570)
|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++|++||+|||||+|.+.+
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~-~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLG-RPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999998 999999999999999999976
Q ss_pred ceeecCCCEEEEEEec--CCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCccccc
Q 008319 178 PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (570)
Q Consensus 178 ~i~l~~G~~v~lt~~~--~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn~ 255 (570)
++.|++||.|+|+.+. ..++.+.|++||++|++.+++||.||+|||+|.|+|++++++.++|+|++||.|+++||||+
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~ 159 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNL 159 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeCcEEcCCceeec
Confidence 7999999999999774 34677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcC-CCceEEEeecCcchhhhHHHHHHhCCEE
Q 008319 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGA 334 (570)
Q Consensus 256 p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~sDgI 334 (570)
||+.+++|.||++|.+||.++++.|+|+|++|||++++|+..+++++.+.+ .++.||+||||++|++|++||++++||+
T Consensus 160 p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi 239 (473)
T TIGR01064 160 PGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGI 239 (473)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcE
Confidence 999999999999999999999999999999999999999999999998887 5899999999999999999999999999
Q ss_pred EEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC
Q 008319 335 MVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (570)
Q Consensus 335 mIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (570)
|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.+|.|||||++|++|++.+|+|++|||+||+.|+|
T Consensus 240 ~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~y 319 (473)
T TIGR01064 240 MVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKY 319 (473)
T ss_pred EEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCcc--cCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCeE
Q 008319 415 PLKAVKVMHTVALRTESSLPVSITPPTQF--SAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTI 491 (570)
Q Consensus 415 P~eaV~~m~~I~~~aE~~~~~~~~~~~~~--~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~pI 491 (570)
|+|||++|++||+++|+...+...+.... .....+..+++|.+|+++|+.+++ +||+||+||+||+++|||||.+||
T Consensus 320 P~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PI 399 (473)
T TIGR01064 320 PVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPI 399 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCE
Confidence 99999999999999998654322221111 111235679999999999999999 999999999999999999999999
Q ss_pred EEEeCCHHHHHHhccccCcEEEEecC-CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEE
Q 008319 492 FAFTNQERIKQRLVLYQGVMPIYMQF-SDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQV 565 (570)
Q Consensus 492 iavt~~~~taRrL~L~rGV~Pil~~~-~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V 565 (570)
||+|++++++|+|+|+|||+|++++. ..+.++++..+++++++.|++++||.||+++|. .|+...|.||.|+|
T Consensus 400 iAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g~-~~~~~~~~~n~i~v 473 (473)
T TIGR01064 400 IAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGDLVVVIQGG-APIGGVGGTNTIRV 473 (473)
T ss_pred EEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC-CCCCCCCCCeEEeC
Confidence 99999999999999999999999876 567899999999999999999999999999994 25556789999875
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-116 Score=940.68 Aligned_cols=485 Identities=43% Similarity=0.653 Sum_probs=454.3
Q ss_pred hhhhhccCCCCCCCCCCccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhh
Q 008319 74 SLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153 (570)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~ 153 (570)
.++|.+.|... ...+...|+|||+||+||++++.|+|++|+++|||++|+|||||++++|++.++|+|++.+.
T Consensus 3 ~~~~~~~L~~~-------~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~ 75 (501)
T KOG2323|consen 3 FLKHECLLSGS-------NGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISN 75 (501)
T ss_pred hhhhhhhhccc-------ccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhh
Confidence 35677777641 12455688999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeecCCCeeeeccCCC--ceeecCCCEEEEEEecCCC--CccEEEeccCCcccccccCCEEEEeCCeeEEEE
Q 008319 154 FEDKAVAIMLDTKGPEVRSGDVPQ--PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAV 229 (570)
Q Consensus 154 ~~~~~i~I~~Dl~GpkiR~G~~~~--~i~l~~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V 229 (570)
++..+++||+|++||++|||.+++ +++|++|+.++||++.... ..+.+++||+++.++|++||.||+|||.+.+.|
T Consensus 76 ~~~~~~ai~LDtkGpEirtg~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V 155 (501)
T KOG2323|consen 76 TGALPCAIMLDTKGPEIRTGDLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIV 155 (501)
T ss_pred cCCcchhhhhccCCCeEeecccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEE
Confidence 986779999999999999999986 8999999999999985433 358999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEEeCcEeccCcc-cccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCC
Q 008319 230 KSKTKDLVKCIVVDGGELKSRRH-LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD 308 (570)
Q Consensus 230 ~~~~~~~i~~~v~~gG~l~s~Kg-In~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~ 308 (570)
+++..+.+.|+|+|+|.++|+|+ +|+||+..++|.|||+|++||+|++++++|+|++||||.++|+.++|++|++.+.+
T Consensus 156 ~~~~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ 235 (501)
T KOG2323|consen 156 KSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREVRKVLGESGKN 235 (501)
T ss_pred EEeecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCc
Confidence 99998999999999999999999 99999999999999999999999999999999999999999999999999988999
Q ss_pred ceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH
Q 008319 309 IHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (570)
Q Consensus 309 i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE 388 (570)
++||+|||+++|+.|+|||+.++||+||+|||||+|+|.|+++.+||.||.+|+.+|||||+||||||||+.+|+|||||
T Consensus 236 ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE 315 (501)
T KOG2323|consen 236 IKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAE 315 (501)
T ss_pred ceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCC--CCChhHHHHHHHHHHHhhcC
Q 008319 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAH--KSHMGDMFAFHSTTMANTLN 466 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~--~~~~~~~ia~~av~~a~~~~ 466 (570)
.+||+|||+||+||+|||||||.|+||++||++|+.||.+||+.+++..+++.+.+.. ..+..+++|.+|+.+|....
T Consensus 316 ~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~ 395 (501)
T KOG2323|consen 316 ASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCL 395 (501)
T ss_pred hHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999887777664322 33567999999999999988
Q ss_pred C-cEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEe------cCCCCHHHHHHHHHHHHHHcCCCC
Q 008319 467 T-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYM------QFSDDVEETFSRAIKLLMDKNLVT 539 (570)
Q Consensus 467 a-~Iiv~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~------~~~~d~d~~i~~al~~lke~Gllk 539 (570)
+ +|+|+|+||++|+++|+|||.+|||++|+..+++||++|||||+|+++ .|..+.++++++|++++++.|+++
T Consensus 396 a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k 475 (501)
T KOG2323|consen 396 ASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILK 475 (501)
T ss_pred ceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhh
Confidence 8 999999999999999999999999999999999999999999999995 577899999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 008319 540 KGEFVTLVQSGAQPIWRQESTHHIQVRKV 568 (570)
Q Consensus 540 ~GD~VVvv~G~~~p~~~~G~tn~I~V~~V 568 (570)
.||.+|++++.. +..|.+|++++.++
T Consensus 476 ~gd~~vvv~~~~---~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 476 KGDVVVVVNKGK---GGASVTNTIRVEKV 501 (501)
T ss_pred cCCEEEEEeccc---CCccceeeEEEeeC
Confidence 999878787753 35788999999764
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=7.1e-104 Score=831.16 Aligned_cols=338 Identities=49% Similarity=0.800 Sum_probs=308.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC
Q 008319 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (570)
Q Consensus 98 ~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~ 177 (570)
||||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++.++++ ++++|++||+|||||||.+.+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999976
Q ss_pred ---ceeecCCCEEEEEEecC---CCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCe-EEEEEEeCcEeccC
Q 008319 178 ---PIILKEGQEFNFTIKRG---VSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDL-VKCIVVDGGELKSR 250 (570)
Q Consensus 178 ---~i~l~~G~~v~lt~~~~---~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~-i~~~v~~gG~l~s~ 250 (570)
++.|++||.|+|+.+.. .++++.|++||++|+++|++||+||+|||+|.|+|++++++. ++|+|.+||.|+++
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~i~~~v~~~G~L~~~ 159 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSSIKCEVLNGGKLKSR 159 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEEEEEEESS-EEEESS
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcceeEEeCCCCCccCC
Confidence 69999999999998854 346789999999999999999999999999999999999999 99999999999999
Q ss_pred cccccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh
Q 008319 251 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (570)
Q Consensus 251 KgIn~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 330 (570)
||||+|+..+++|.||++|++||+|++++|+|||++|||++++||.++|++|.+.|.+++|||||||++|++||+||+++
T Consensus 160 KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~ 239 (348)
T PF00224_consen 160 KGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEA 239 (348)
T ss_dssp EBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHH
T ss_pred ccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccccc
Q 008319 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 331 sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (570)
+|||||||||||+|+|+++||.+||+|+++|+++|||||+||||||||+++|.|||||++|+|||+.+|+|++|||+|||
T Consensus 240 sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa 319 (348)
T PF00224_consen 240 SDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETA 319 (348)
T ss_dssp SSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHH
T ss_pred cCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCC
Q 008319 411 HGKFPLKAVKVMHTVALRTESSLPVS 436 (570)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (570)
+|+||++||++|++||++||+.+++.
T Consensus 320 ~G~~p~~~v~~~~~i~~~~E~~~~~~ 345 (348)
T PF00224_consen 320 IGKYPVEAVKTMARIIREAEKYLDYR 345 (348)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHTS-HH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999987653
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=1.8e-102 Score=815.55 Aligned_cols=331 Identities=38% Similarity=0.671 Sum_probs=320.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccCCC-c
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-P 178 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~~~-~ 178 (570)
++||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++. ++++||+||||||||+|.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~-----~~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLD-----DSIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhh-----hhcceeecCCCCcceecccCCCc
Confidence 6899999999999999999999999999999999999999999999999976 358999999999999999975 6
Q ss_pred eeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcccccCCC
Q 008319 179 IILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGK 258 (570)
Q Consensus 179 i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn~p~~ 258 (570)
+.|++|+.|+|+.+...++.+.++++|++|++.+++||.||+|||+|.|+|++++++.+.|+|++||.|+|+||||+||+
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~ 156 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGA 156 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccc
Confidence 99999999999987656777899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcC-CCceEEEeecCcchhhhHHHHHHhCCEEEEc
Q 008319 259 SANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVA 337 (570)
Q Consensus 259 ~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~sDgImIg 337 (570)
.+++|.||+||++||+|++++++|||++|||++++||.++|++|.+.| .+++|||||||++|++||+||++++||||||
T Consensus 157 ~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVA 236 (352)
T PRK06739 157 IVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIA 236 (352)
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999875 4799999999999999999999999999999
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHH
Q 008319 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLK 417 (570)
Q Consensus 338 rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~e 417 (570)
|||||+|+|+++||.+||+|++.|+++|||||+||||||||+++|.|||||++|||||++||+|++|||+|||+|+||++
T Consensus 237 RGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPve 316 (352)
T PRK06739 237 RGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIE 316 (352)
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 008319 418 AVKVMHTVALRTESSLPV 435 (570)
Q Consensus 418 aV~~m~~I~~~aE~~~~~ 435 (570)
||++|++||++||+....
T Consensus 317 aV~~m~~I~~~aE~~~~~ 334 (352)
T PRK06739 317 SVSTLRLVSEFAEHVKKD 334 (352)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999999999976543
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-92 Score=772.42 Aligned_cols=342 Identities=30% Similarity=0.474 Sum_probs=325.7
Q ss_pred CCCCCCCccCCCCCCCCceEEEecC-CCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEE
Q 008319 84 GQCTPGKGVVGPNARRKTKIVCTIG-PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIM 162 (570)
Q Consensus 84 ~~~~~~~~~~~~~~~r~tKIi~TiG-Ps~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~ 162 (570)
|.+|+..++++++.+|+|||||||| |++++++.|++|+++||||||||||||++++|+++|+++|+++++++ ++++|+
T Consensus 124 L~~~~~~l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~g-r~~~I~ 202 (608)
T PRK14725 124 LDEHAEALLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELG-RRCRIA 202 (608)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcC-CCEEEE
Confidence 3447777899999999999999999 69999999999999999999999999999999999999999999998 999999
Q ss_pred eecCCCeeeeccCCC-----------------------------------------------------------------
Q 008319 163 LDTKGPEVRSGDVPQ----------------------------------------------------------------- 177 (570)
Q Consensus 163 ~Dl~GpkiR~G~~~~----------------------------------------------------------------- 177 (570)
+||+|||||||.+..
T Consensus 203 mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg 282 (608)
T PRK14725 203 MDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARG 282 (608)
T ss_pred EeCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccc
Confidence 999999999999853
Q ss_pred -------------------------------------------------ceeecCCCEEEEEEecCCC-----Ccc--EE
Q 008319 178 -------------------------------------------------PIILKEGQEFNFTIKRGVS-----TED--TV 201 (570)
Q Consensus 178 -------------------------------------------------~i~l~~G~~v~lt~~~~~~-----~~~--~i 201 (570)
++.|++||.++|+.+...+ +.. .|
T Consensus 283 ~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i 362 (608)
T PRK14725 283 KKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARI 362 (608)
T ss_pred cceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEE
Confidence 4799999999999874322 344 89
Q ss_pred EeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEe----CcEeccCcccccCCCccCCCCCChhhHHHhhhhh
Q 008319 202 SVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVD----GGELKSRRHLNVRGKSANLPSITDKDWEDIKFGV 277 (570)
Q Consensus 202 ~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~----gG~l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~ 277 (570)
+|+|+++++.+++||.||+|||+|.++|++++++.++|+|++ ||.|+++||||+||..+++|.||+||++||.|++
T Consensus 363 ~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl~f~~ 442 (608)
T PRK14725 363 SCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDLAFVA 442 (608)
T ss_pred EechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHhcCC-CceEEEeecCcchhhhHHHHHHhC-----CEEEEcCCCcccCCCCCCHH
Q 008319 278 DNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISAS-----DGAMVARGDLGAELPIEDVP 351 (570)
Q Consensus 278 ~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IiaKIEt~~gv~NldeIl~~s-----DgImIgrGDLg~eig~~~v~ 351 (570)
++ +|||++|||++++||..++++|.+.|. ++.|||||||++|++||+||+.++ |||||||||||+|+|+++||
T Consensus 443 ~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp 521 (608)
T PRK14725 443 KH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLA 521 (608)
T ss_pred Hh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHH
Confidence 99 999999999999999999999988764 799999999999999999999986 99999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 008319 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 352 ~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
.+||+||+.|+++|||||+||||||||+++|.|||||++|+|||+ |+||+||| +|+||+|||++|++||+++|.
T Consensus 522 ~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~ 595 (608)
T PRK14725 522 EVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEE 595 (608)
T ss_pred HHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 99999998 999999999999999999997
Q ss_pred CC
Q 008319 432 SL 433 (570)
Q Consensus 432 ~~ 433 (570)
+.
T Consensus 596 ~~ 597 (608)
T PRK14725 596 HQ 597 (608)
T ss_pred hh
Confidence 65
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=9.1e-91 Score=754.38 Aligned_cols=341 Identities=28% Similarity=0.457 Sum_probs=324.8
Q ss_pred CCCCCCccCCCCCCCCceEEEec-CCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEe
Q 008319 85 QCTPGKGVVGPNARRKTKIVCTI-GPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIML 163 (570)
Q Consensus 85 ~~~~~~~~~~~~~~r~tKIi~Ti-GPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~ 163 (570)
.+|+..++++++.+|+||||||| ||+++++|.|++|+++||||||||||||++++|+++|+++|+++++++ ++++|++
T Consensus 119 ~~~~~~l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g-~~i~Il~ 197 (493)
T PRK08187 119 AAHTEELFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATG-RRCKILM 197 (493)
T ss_pred HHHHHHHcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 34777789999999999999999 599999999999999999999999999999999999999999999998 9999999
Q ss_pred ecCCCeeeeccCCC---ceeecCCCEEEEEEecCCC----CccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCe
Q 008319 164 DTKGPEVRSGDVPQ---PIILKEGQEFNFTIKRGVS----TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDL 236 (570)
Q Consensus 164 Dl~GpkiR~G~~~~---~i~l~~G~~v~lt~~~~~~----~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~ 236 (570)
||+|||||||.+.+ ++.|++||.|+|+.+...+ +...|+|+|+++++.+++||.||+|||+|.|+|++++++.
T Consensus 198 DL~GPKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~ 277 (493)
T PRK08187 198 DLAGPKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGG 277 (493)
T ss_pred eCCCCceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEeCCE
Confidence 99999999999975 4899999999999874322 4568999999999999999999999999999999999999
Q ss_pred EEEEEE----eCcEeccCcccccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcC----CC
Q 008319 237 VKCIVV----DGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN----AD 308 (570)
Q Consensus 237 i~~~v~----~gG~l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~----~~ 308 (570)
+.|+|+ +||.|+++||||+||..+++|.+|++|++||.|+++ ++|+|++|||++++||..++++|...+ .+
T Consensus 278 v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~ 356 (493)
T PRK08187 278 ALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRK 356 (493)
T ss_pred EEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 999999 899999999999999999999999999999999998 699999999999999999999998765 47
Q ss_pred ceEEEeecCcchhhhHHHHHHhCC-----EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCC
Q 008319 309 IHVIVKIESADSIPNLHSIISASD-----GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT 383 (570)
Q Consensus 309 i~IiaKIEt~~gv~NldeIl~~sD-----gImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~ 383 (570)
+.||+||||++|++|++||+.++| |||||||||++|+|+++++.+|++|+.+|+++|||+|+||||||||+++|.
T Consensus 357 ~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~ 436 (493)
T PRK08187 357 LGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGL 436 (493)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCC
Confidence 999999999999999999999888 999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 008319 384 PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 384 PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (570)
|||||++|+||+ +|+||+||| +|+||+|||++|++|+.++|++.
T Consensus 437 PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~~ 480 (493)
T PRK08187 437 PSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGHQ 480 (493)
T ss_pred CchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999997 999999998 99999999999999999999763
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.95 E-value=6.9e-28 Score=216.78 Aligned_cols=115 Identities=32% Similarity=0.527 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEecCCC-CHHHHHHHH
Q 008319 451 GDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSD-DVEETFSRA 528 (570)
Q Consensus 451 ~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~~~~-d~d~~i~~a 528 (570)
+|++|.+|+++|+++++ +|||+|.||+||+++|||||.|||||+|++++++|||+|+|||+|++++... +.++.++.+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHH
Confidence 48899999999999999 9999999999999999999999999999999999999999999999988776 899999999
Q ss_pred HHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEE
Q 008319 529 IKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRK 567 (570)
Q Consensus 529 l~~lke~Gllk~GD~VVvv~G~~~p~~~~G~tn~I~V~~ 567 (570)
+++++++|++++||.||+++|. |.+..|.||+++|++
T Consensus 81 ~~~~~~~g~~~~gd~vVv~~g~--~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 81 LEYAKERGLLKPGDKVVVVAGM--PFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHTTSS-TTSEEEEEEES--STTTTSSEEEEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCEEEEEEC
Confidence 9999999999999999999995 668899999999975
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.65 E-value=2.9e-16 Score=159.24 Aligned_cols=135 Identities=26% Similarity=0.304 Sum_probs=116.5
Q ss_pred CCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHH--------------------------HHHHhcCCCceEEEee
Q 008319 262 LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK--------------------------DYLKSCNADIHVIVKI 315 (570)
Q Consensus 262 lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr--------------------------~~l~~~~~~i~IiaKI 315 (570)
+-.+...|...|+.++|.|+++|.+|+|+++++++++. +|++..|.++.++++|
T Consensus 66 ~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~I 145 (249)
T TIGR03239 66 VVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQI 145 (249)
T ss_pred EEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEE
Confidence 34455678899999999999999999999999999874 4777888999999999
Q ss_pred cCcchhhhHHHHHHh--CCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChH
Q 008319 316 ESADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRA 387 (570)
Q Consensus 316 Et~~gv~NldeIl~~--sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrA 387 (570)
||++|++|++||+++ +|++++|++||+.++|. +++..+..+++.+|+++|||+++. .+.|
T Consensus 146 Et~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~---------~~~~--- 213 (249)
T TIGR03239 146 ESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL---------APVE--- 213 (249)
T ss_pred CCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc---------CCCH---
Confidence 999999999999988 99999999999999987 367788889999999999999863 2222
Q ss_pred HHhHHHHHHHhCccEEEeccccc
Q 008319 388 EVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 388 Ev~Dv~nav~~G~D~vmLs~ETA 410 (570)
.+...++..|++.++++.++.
T Consensus 214 --~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 --ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred --HHHHHHHHcCCCEEEEhHHHH
Confidence 246678999999999988765
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.65 E-value=3.1e-16 Score=159.62 Aligned_cols=136 Identities=26% Similarity=0.340 Sum_probs=116.4
Q ss_pred CCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHH--------------------------HHHHHhcCCCceEEEee
Q 008319 262 LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL--------------------------KDYLKSCNADIHVIVKI 315 (570)
Q Consensus 262 lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~v--------------------------r~~l~~~~~~i~IiaKI 315 (570)
+..+++.|...|+.+++.|+++|.+|+|+++++++++ .+|++..|.++.++++|
T Consensus 73 lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~I 152 (256)
T PRK10558 73 VVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQI 152 (256)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEE
Confidence 4455667889999999999999999999999999986 35778888999999999
Q ss_pred cCcchhhhHHHHHHh--CCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChH
Q 008319 316 ESADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRA 387 (570)
Q Consensus 316 Et~~gv~NldeIl~~--sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrA 387 (570)
||++|++|++||+++ +|++++|++||+.++|. +++..+..+++.+|+++|||+++. . ++.
T Consensus 153 Et~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~---------~--~~~- 220 (256)
T PRK10558 153 ESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL---------A--PVE- 220 (256)
T ss_pred CCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc---------C--CCH-
Confidence 999999999999987 99999999999999986 358888889999999999999862 2 222
Q ss_pred HHhHHHHHHHhCccEEEecccccC
Q 008319 388 EVSDIAIAVREGADAVMLSGETAH 411 (570)
Q Consensus 388 Ev~Dv~nav~~G~D~vmLs~ETA~ 411 (570)
.+...++..|++.++++.++..
T Consensus 221 --~~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 221 --ADARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred --HHHHHHHHcCCCEEEEchHHHH
Confidence 2356778999999999888653
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.62 E-value=1.3e-15 Score=155.90 Aligned_cols=133 Identities=23% Similarity=0.307 Sum_probs=113.4
Q ss_pred CCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHH---------------------------HHHHhcCCCceEEEeec
Q 008319 264 SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK---------------------------DYLKSCNADIHVIVKIE 316 (570)
Q Consensus 264 ~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr---------------------------~~l~~~~~~i~IiaKIE 316 (570)
.+...|...|+.++|.|+++|.+|+|+|+++.+++. +|++..|.++.+|+|||
T Consensus 74 Rvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiE 153 (267)
T PRK10128 74 RPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVE 153 (267)
T ss_pred ECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEEC
Confidence 344556788999999999999999999999998763 34556678899999999
Q ss_pred CcchhhhHHHHHHh--CCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH
Q 008319 317 SADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (570)
Q Consensus 317 t~~gv~NldeIl~~--sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE 388 (570)
|++|++|++||+++ .|++++|++||+.++|+ +++..+.++++++|+++|||+++. ...|
T Consensus 154 t~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~---------~~~~---- 220 (267)
T PRK10128 154 SKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL---------AVDP---- 220 (267)
T ss_pred CHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc---------CCCH----
Confidence 99999999999998 99999999999999997 478888899999999999999862 2222
Q ss_pred HhHHHHHHHhCccEEEeccccc
Q 008319 389 VSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA 410 (570)
.+...++..|++.+.++.++.
T Consensus 221 -~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 -DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred -HHHHHHHHcCCcEEEEChHHH
Confidence 345678899999999988875
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4e-15 Score=147.09 Aligned_cols=136 Identities=26% Similarity=0.320 Sum_probs=118.1
Q ss_pred CCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHH---------------------------HHHHHhcCCCceEEE
Q 008319 261 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL---------------------------KDYLKSCNADIHVIV 313 (570)
Q Consensus 261 ~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~v---------------------------r~~l~~~~~~i~Iia 313 (570)
++-.++..|...|+..++.|+..+.+|+|+|+++.+++ .+|+..+|+++.+++
T Consensus 70 pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lv 149 (255)
T COG3836 70 PVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLV 149 (255)
T ss_pred CeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEE
Confidence 44456678889999999999999999999999999876 347889999999999
Q ss_pred eecCcchhhhHHHHHHh--CCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcC
Q 008319 314 KIESADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (570)
Q Consensus 314 KIEt~~gv~NldeIl~~--sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~Pt 385 (570)
||||++|++|||+|+++ +|||||||+||+.+||. ++|..+...++.+.+++||..++- .+.|.
T Consensus 150 qiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil---------~~~p~ 220 (255)
T COG3836 150 QIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGIL---------AADPA 220 (255)
T ss_pred EEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccc---------cCCHH
Confidence 99999999999999999 99999999999999998 467778889999999999998862 33333
Q ss_pred hHHHhHHHHHHHhCccEEEeccccc
Q 008319 386 RAEVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 386 rAEv~Dv~nav~~G~D~vmLs~ETA 410 (570)
+..+++..|+..+.+..+|.
T Consensus 221 -----~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 221 -----DARRYLALGATFVAVGSDTG 240 (255)
T ss_pred -----HHHHHHHhCCeEEEEeccHH
Confidence 46688999999998887765
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.53 E-value=2.1e-14 Score=145.73 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=109.6
Q ss_pred CChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHH---------------------------hcCCCceEEEeecC
Q 008319 265 ITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLK---------------------------SCNADIHVIVKIES 317 (570)
Q Consensus 265 lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~---------------------------~~~~~i~IiaKIEt 317 (570)
+...|..+|+.+++.|+|+|.+|+|+|+++++++.+++. ..|.++.++++|||
T Consensus 69 v~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt 148 (249)
T TIGR02311 69 PAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVET 148 (249)
T ss_pred CCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecC
Confidence 344455689999999999999999999999998866643 22346889999999
Q ss_pred cchhhhHHHHHHh--CCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHH
Q 008319 318 ADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEV 389 (570)
Q Consensus 318 ~~gv~NldeIl~~--sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv 389 (570)
++|++|++||+++ .|++++|++||+.+||. +++..+.+++...|+.+||+.++. ...|
T Consensus 149 ~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~---------~~~~----- 214 (249)
T TIGR02311 149 REALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGIL---------TADP----- 214 (249)
T ss_pred HHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeec---------CCCH-----
Confidence 9999999999988 89999999999999997 356677888999999999999963 1222
Q ss_pred hHHHHHHHhCccEEEeccccc
Q 008319 390 SDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 390 ~Dv~nav~~G~D~vmLs~ETA 410 (570)
.+...++..|++.++++.|+.
T Consensus 215 ~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 215 KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHHHcCCCEEEEchHHH
Confidence 345677899999999988865
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.50 E-value=9.3e-15 Score=145.08 Aligned_cols=134 Identities=24% Similarity=0.265 Sum_probs=103.4
Q ss_pred CCCChh-hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhc-------CCCceEEEeecCcchhhhHHHHHHh--CC
Q 008319 263 PSITDK-DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA--SD 332 (570)
Q Consensus 263 p~lt~k-D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~-------~~~i~IiaKIEt~~gv~NldeIl~~--sD 332 (570)
+.+... -.+||+ +++.|+|+|.+|+|+++++++++.+++... +.++.++++|||++||+|++||++. .|
T Consensus 67 n~~~~~~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~ 145 (221)
T PF03328_consen 67 NSLDSPHIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVD 145 (221)
T ss_dssp SSTTCHHHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEE
T ss_pred CCCCcchhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCee
Confidence 333433 346787 899999999999999999999999988654 3468999999999999999999966 79
Q ss_pred EEEEcCCCcccCCCCC------CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH--HhHHHHHHHhCccEEE
Q 008319 333 GAMVARGDLGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVM 404 (570)
Q Consensus 333 gImIgrGDLg~eig~~------~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vm 404 (570)
++++|++||+.+||.+ ++..+..+++.+|+++|||.+-. ....+...+ ..++++++..|+|+-+
T Consensus 146 ~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~--------~~~~~~d~~~~~~~~~~~~~~G~dg~~ 217 (221)
T PF03328_consen 146 GLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG--------VFPDFEDAEGLEAEGFRARALGFDGKL 217 (221)
T ss_dssp EEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE--------EESSSSHHHHHHHHHHHCCEEEEHHCC
T ss_pred EEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE--------eeCCHHHHHHHHHHHHHHHHHcccccc
Confidence 9999999999999984 48888999999999999976542 223344444 5567788888877654
Q ss_pred e
Q 008319 405 L 405 (570)
Q Consensus 405 L 405 (570)
+
T Consensus 218 ~ 218 (221)
T PF03328_consen 218 C 218 (221)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.22 E-value=6.2e-11 Score=137.62 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=117.2
Q ss_pred CCCChhhHHHhhhhh-hcCCcE--EEecCCCChhHHHHHHHHHHhc-----CCCceEEEeecCcchhhhHHHHHHhCCEE
Q 008319 263 PSITDKDWEDIKFGV-DNQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGA 334 (570)
Q Consensus 263 p~lt~kD~~dI~~~~-~~gvd~--I~~SfV~sa~dv~~vr~~l~~~-----~~~i~IiaKIEt~~gv~NldeIl~~sDgI 334 (570)
|.+-....+.|..++ +.|+.. |++|||+++++++++++++... +.++++++|||+++|+.|+|+|++++|++
T Consensus 609 ~~lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfi 688 (782)
T TIGR01418 609 EEAFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGF 688 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEE
Confidence 334445567777887 889888 9999999999999999888653 23489999999999999999999999999
Q ss_pred EEcCCCccc-CCCC---------------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHh
Q 008319 335 MVARGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (570)
Q Consensus 335 mIgrGDLg~-eig~---------------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (570)
+||+.||+. .++. +.|..+.++++++|+++|||++++.+|-. ..| ..+..++..
T Consensus 689 sIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~ 758 (782)
T TIGR01418 689 SIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEE 758 (782)
T ss_pred EECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHc
Confidence 999999997 4443 46888899999999999999998643210 012 235577889
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 008319 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
|++.+.++.+ .+-.++..+.++|+
T Consensus 759 G~~~ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 759 GIDSISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred CCCEEEECcc---------hHHHHHHHHHHhcC
Confidence 9999999755 34455666666663
No 27
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.21 E-value=6.2e-11 Score=122.82 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=104.7
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhc-------CCCceEEEeecCcchhhhHHHHHHh---CCEEE
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA---SDGAM 335 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~-------~~~i~IiaKIEt~~gv~NldeIl~~---sDgIm 335 (570)
|+...+||+..++.|+++|.+|+|++++++..+.+++... +.++.++++|||++|+.|+++|++. +|+++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 4455688988899999999999999999999998777542 3468899999999999999999954 77999
Q ss_pred EcCCCcccCCCCC------CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcCh--HH--HhHHHHHHHhCccEEEe
Q 008319 336 VARGDLGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR--AE--VSDIAIAVREGADAVML 405 (570)
Q Consensus 336 IgrGDLg~eig~~------~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~Ptr--AE--v~Dv~nav~~G~D~vmL 405 (570)
+|+.||+.++|.. ++..+..+++..|+++|+++|-. +.+.. .| ..+..++...|+++-+.
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~----------v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT----------VYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC----------CccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 9999999999873 47888899999999999998642 21211 11 44567788888877554
No 28
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.19 E-value=9.8e-11 Score=136.02 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=118.9
Q ss_pred CCChhhHHHhhhhhh-cCCcE--EEecCCCChhHHHHHHHHHHhc-----CCCceEEEeecCcchhhhHHHHHHhCCEEE
Q 008319 264 SITDKDWEDIKFGVD-NQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGAM 335 (570)
Q Consensus 264 ~lt~kD~~dI~~~~~-~gvd~--I~~SfV~sa~dv~~vr~~l~~~-----~~~i~IiaKIEt~~gv~NldeIl~~sDgIm 335 (570)
.+-....+.|..+++ .|++. |++|||++++++++++++++.. +.++++++||||++|+.|+|+|++++|+++
T Consensus 617 ~lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~ 696 (795)
T PRK06464 617 EAFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFS 696 (795)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEE
Confidence 344556677888888 79888 9999999999999999887644 346899999999999999999999999999
Q ss_pred EcCCCccc-CCCC---------------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhC
Q 008319 336 VARGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG 399 (570)
Q Consensus 336 IgrGDLg~-eig~---------------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G 399 (570)
||+.||+. .++. +.|..+.++++++|+++|||++++.+|... .|. .+...+..|
T Consensus 697 IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~-----~p~-----~~~~l~~~G 766 (795)
T PRK06464 697 IGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSD-----HPD-----FAEWLVEEG 766 (795)
T ss_pred ECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCC-----cHH-----HHHHHHHCC
Confidence 99999997 3442 468888899999999999999986543210 022 244678899
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 008319 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (570)
++.+.++.+ ++-.++..+.++|+.+
T Consensus 767 ~~~ls~~~d---------~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 767 IDSISLNPD---------AVVDTWLAVAEVEKKI 791 (795)
T ss_pred CCEEEEcch---------hHHHHHHHHHHhHHHh
Confidence 999998744 4455666677777643
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.08 E-value=4.4e-10 Score=126.27 Aligned_cols=133 Identities=16% Similarity=0.086 Sum_probs=109.4
Q ss_pred CCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHh-----------cCCCceEEEeecCcchhhhHHHHHHhC
Q 008319 263 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIISAS 331 (570)
Q Consensus 263 p~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~-----------~~~~i~IiaKIEt~~gv~NldeIl~~s 331 (570)
|.+-....+.|..+.+.|...|++|||++++++++++++++. .+.++.+.+||||+.|+.|+|+|++.+
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~v 445 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEV 445 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhC
Confidence 445555667788889999999999999999999998876653 356789999999999999999999999
Q ss_pred CEEEEcCCCcccC----------CCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH
Q 008319 332 DGAMVARGDLGAE----------LPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (570)
Q Consensus 332 DgImIgrGDLg~e----------ig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 395 (570)
|+++||+.||+.. ++. +.|..+.++++++|+++|||+.++..|- ..| ..+..+
T Consensus 446 Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~~l 514 (565)
T TIGR01417 446 DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIPLL 514 (565)
T ss_pred CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHHHH
Confidence 9999999999873 442 4688899999999999999999764321 122 246678
Q ss_pred HHhCccEEEec
Q 008319 396 VREGADAVMLS 406 (570)
Q Consensus 396 v~~G~D~vmLs 406 (570)
+..|++.+.++
T Consensus 515 ~~~G~~~lsv~ 525 (565)
T TIGR01417 515 LGLGLRELSMS 525 (565)
T ss_pred HHCCCCEEEEC
Confidence 89999998775
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.98 E-value=1.6e-09 Score=121.98 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=108.1
Q ss_pred CCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHh-----------cCCCceEEEeecCcchhhhHHHHHHhC
Q 008319 263 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIISAS 331 (570)
Q Consensus 263 p~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~-----------~~~~i~IiaKIEt~~gv~NldeIl~~s 331 (570)
|.+-....+.|..+.+.|...|++|||.++++++++++.++. .+.++++.+||||+.|+.|+|+|++.+
T Consensus 367 ~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~v 446 (575)
T PRK11177 367 KEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEV 446 (575)
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhhC
Confidence 444455567777888999999999999999999998876642 346789999999999999999999999
Q ss_pred CEEEEcCCCcccCC-----C-------C----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH
Q 008319 332 DGAMVARGDLGAEL-----P-------I----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (570)
Q Consensus 332 DgImIgrGDLg~ei-----g-------~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 395 (570)
|+++||+.||+..+ + . +.|..+.++++++|+++|||+.++.+| .. .|.. +.-.
T Consensus 447 Df~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~----A~--dp~~-----~~lL 515 (575)
T PRK11177 447 DFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGEL----AG--DERA-----TLLL 515 (575)
T ss_pred CEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCC----CC--CHHH-----HHHH
Confidence 99999999999833 2 1 568889999999999999999998763 22 2322 4467
Q ss_pred HHhCccEEEec
Q 008319 396 VREGADAVMLS 406 (570)
Q Consensus 396 v~~G~D~vmLs 406 (570)
+..|.|-+-++
T Consensus 516 lglGi~~lSm~ 526 (575)
T PRK11177 516 LGMGLDEFSMS 526 (575)
T ss_pred HHCCCCeEEEC
Confidence 88999987775
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.60 E-value=9.8e-08 Score=98.49 Aligned_cols=132 Identities=25% Similarity=0.229 Sum_probs=108.2
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCce---EEEeecCcchhhhHHHHHHhC---CEEEEcCC
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIH---VIVKIESADSIPNLHSIISAS---DGAMVARG 339 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~---IiaKIEt~~gv~NldeIl~~s---DgImIgrG 339 (570)
|++-.+||.-.+..++|+|.+|+++++.|+..+...+........ +++.|||+.|+.|..+|...+ .|+.+|..
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 457778888888999999999999999999999998876654444 999999999999999999985 79999999
Q ss_pred CcccCCCCC-------CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH--HhHHHHHHHhCccEEEe
Q 008319 340 DLGAELPIE-------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVML 405 (570)
Q Consensus 340 DLg~eig~~-------~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vmL 405 (570)
||..+++.. .+..+..+|+.+|+.+|++.+.. .++. -...| ..+..++...|+|+-++
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~-------V~~d-~~d~~g~~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG-------VYTD-INDPEGFAREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc-------cccc-cCCHHHHHHHHHHHHHcCCCcccc
Confidence 999999862 56678899999999999998752 1211 11122 56678889999988665
No 32
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.47 E-value=5.2e-06 Score=91.97 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=96.5
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHhcC-------CCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCCC--
Q 008319 280 QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELP-- 346 (570)
Q Consensus 280 gvd~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~eig-- 346 (570)
|+ +|.+|+++++++++.+.+.+...+ ..++++++|||+.|+-|++||+.. +-|+..||.|+..+++
T Consensus 185 gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~ 263 (511)
T cd00727 185 GP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKK 263 (511)
T ss_pred Cc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHh
Confidence 57 999999999999999988876432 358899999999999999999976 4599999999998882
Q ss_pred --C-------C--------CHHHH-HHHHHHHHHHcCCCEEEEccchhhhhcCCCcCh----------HH-HhHHHHHHH
Q 008319 347 --I-------E--------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR----------AE-VSDIAIAVR 397 (570)
Q Consensus 347 --~-------~--------~v~~~-qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~Ptr----------AE-v~Dv~nav~ 397 (570)
. + .+..+ ++.++.+|+++|+..|-. |.. ..|.+ +. ..|-.....
T Consensus 264 ~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG------m~a-~ip~kdd~~~n~~~l~~~r~dk~~~~~ 336 (511)
T cd00727 264 FRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG------MAA-QIPIKDDPAANEAALAKVRADKLREAT 336 (511)
T ss_pred hccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc------hhh-cCCcccchhhHHHHHHHHHHHHHHHHh
Confidence 1 1 23333 667999999999998752 321 12222 11 455678889
Q ss_pred hCccEEEecccccCCCCHHHHHHHHHHHH
Q 008319 398 EGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (570)
+|+|+-++ -+|-+ |...+++-
T Consensus 337 lGfDGkwv-------iHP~q-V~ianevF 357 (511)
T cd00727 337 AGHDGTWV-------AHPGL-VPVAMEVF 357 (511)
T ss_pred CCCCcccc-------cCHHH-HHHHHHHH
Confidence 99999777 47744 33344444
No 33
>PRK09255 malate synthase; Validated
Probab=98.38 E-value=9e-06 Score=90.45 Aligned_cols=142 Identities=14% Similarity=0.135 Sum_probs=100.1
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcC-------CCceEEEeecCcchhhhHHHHHHh----CCEEEE
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMV 336 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IiaKIEt~~gv~NldeIl~~----sDgImI 336 (570)
+|.+.+.-. ..|+ +|.+|++++++++..+.+.+...+ ..++++++|||+.|+-|++||+.. +-|+..
T Consensus 195 hd~~~l~~~-g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~ 272 (531)
T PRK09255 195 HNAKELLAK-GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNC 272 (531)
T ss_pred hhHHHHHhC-CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEc
Confidence 444433322 4567 999999999999999988876432 358899999999999999999976 459999
Q ss_pred cCCCcccCC----CC------C---------CHHH-HHHHHHHHHHHcCCCEEEEccchhhhhcCCCcCh----------
Q 008319 337 ARGDLGAEL----PI------E---------DVPL-LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR---------- 386 (570)
Q Consensus 337 grGDLg~ei----g~------~---------~v~~-~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~Ptr---------- 386 (570)
||.|+..++ +. + .+.. .++.++.+|+++|+..|-. |. ...|.+
T Consensus 273 G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG------m~-a~ip~k~D~~~n~~a~ 345 (531)
T PRK09255 273 GRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG------MA-AFIPIKNDPEANEAAL 345 (531)
T ss_pred ChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc------hh-hcCCcccChhhhHHHH
Confidence 999999662 21 0 2333 4778889999999998752 21 123311
Q ss_pred HH-HhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHH
Q 008319 387 AE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 387 AE-v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (570)
+. ..|-.....+|+|+-++ -+|-+ |...+++-
T Consensus 346 ~g~r~dk~r~~~lGfDGkwv-------iHP~q-V~ianevF 378 (531)
T PRK09255 346 AKVRADKEREANDGHDGTWV-------AHPGL-VPTAMEVF 378 (531)
T ss_pred HHHHHHHHHHHhCCCCccee-------cCHHH-HHHHHHHH
Confidence 11 44567889999999777 57843 44444443
No 34
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.38 E-value=7e-06 Score=90.84 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=87.5
Q ss_pred cEEEecCCCChhHHHHHHHHHHhcC-------CCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCCC----
Q 008319 282 DFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELP---- 346 (570)
Q Consensus 282 d~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~eig---- 346 (570)
-+|.+|++++++++..+.+.+.... ..++++++|||+.|+-|++||+.. +.|+..||.|+..++.
T Consensus 187 p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~ 266 (511)
T TIGR01344 187 PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLR 266 (511)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHh
Confidence 4999999999999998888775432 348899999999999999999976 5699999999994443
Q ss_pred C----------------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcCh--------HH---HhHHHHHHHhC
Q 008319 347 I----------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR--------AE---VSDIAIAVREG 399 (570)
Q Consensus 347 ~----------------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~Ptr--------AE---v~Dv~nav~~G 399 (570)
. +-+...++.++..|+++|+.+|-. |.. -.|.+ |- ..|-.....+|
T Consensus 267 ~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdG------m~a-~ip~k~D~~~n~~al~~vr~dk~re~~lG 339 (511)
T TIGR01344 267 NLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGG------MAA-FIPIKGDPAANEAAMNKVRADKIREAKNG 339 (511)
T ss_pred hCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCc------hhc-cCCcccChhhHHHHHHHHHHHHHHHHhCC
Confidence 1 123334778889999999998752 211 11221 11 45567888999
Q ss_pred ccEEEe
Q 008319 400 ADAVML 405 (570)
Q Consensus 400 ~D~vmL 405 (570)
+|+-.+
T Consensus 340 fDGkwv 345 (511)
T TIGR01344 340 HDGTWV 345 (511)
T ss_pred CCcccc
Confidence 999776
No 35
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.29 E-value=3.6e-05 Score=85.86 Aligned_cols=139 Identities=12% Similarity=0.119 Sum_probs=97.4
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHhcC-------CCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCCCCC
Q 008319 280 QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIE 348 (570)
Q Consensus 280 gvd~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~eig~~ 348 (570)
+--+|.+|++++++++..+.+.+...+ ..+++++.|||+.|+-|++||+.. +.|+..|+.||..+++..
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 334889999999999999988875533 258899999999999999999977 349999999999988531
Q ss_pred -------------------C-HHHHHHHHHHHHHHcCCCEEEE--ccch-hhhhcCCCcChHH-HhHHHHHHHhCccEEE
Q 008319 349 -------------------D-VPLLQEDIIRRCRSMQKPVIVA--TNML-ESMIDHPTPTRAE-VSDIAIAVREGADAVM 404 (570)
Q Consensus 349 -------------------~-v~~~qk~Ii~~c~~~gKPviva--TqmL-eSM~~~~~PtrAE-v~Dv~nav~~G~D~vm 404 (570)
. +...++.++..|+++|.+.|-. +|+- ..|-..+....+. ..|-..+...|+|+-+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkw 343 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTW 343 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccc
Confidence 1 4456778999999999987532 1111 0010000001112 4567888999999877
Q ss_pred ecccccCCCCHHHHHHHHHHHH
Q 008319 405 LSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~ 426 (570)
. -+|- -|...+.+-
T Consensus 344 v-------iHP~-qV~~~n~vF 357 (511)
T cd00480 344 V-------AHPG-LAPLAALVF 357 (511)
T ss_pred c-------cCHH-HHHHHHHHH
Confidence 6 3674 344444444
No 36
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.19 E-value=1.1e-05 Score=84.05 Aligned_cols=134 Identities=19% Similarity=0.206 Sum_probs=99.7
Q ss_pred CCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhc-----------CCCceEEEeecCcchhhhHHHHHHhC
Q 008319 263 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-----------NADIHVIVKIESADSIPNLHSIISAS 331 (570)
Q Consensus 263 p~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~-----------~~~i~IiaKIEt~~gv~NldeIl~~s 331 (570)
|.+-....+.|..+...|-=.|.+|||++.+++.++++++++. +.++++-++||+|.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 4445556677777777776679999999999999999887655 35689999999999999999999999
Q ss_pred CEEEEcCCCccc-----CCCC-----------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH
Q 008319 332 DGAMVARGDLGA-----ELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (570)
Q Consensus 332 DgImIgrGDLg~-----eig~-----------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 395 (570)
|.+-||-.||.- +=.- +-|..+.++++++|+++||||.++.+|-. .|. -+--.
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~-----~~~~L 267 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPE-----AIPLL 267 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHH-----HHHHH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHH-----HHHHH
Confidence 999999888732 1111 35778889999999999999999977433 222 35577
Q ss_pred HHhCccEEEecc
Q 008319 396 VREGADAVMLSG 407 (570)
Q Consensus 396 v~~G~D~vmLs~ 407 (570)
+..|.|.+-++.
T Consensus 268 l~lGi~~lSv~p 279 (293)
T PF02896_consen 268 LGLGIRSLSVSP 279 (293)
T ss_dssp HHHT-SEEEE-G
T ss_pred HHcCCCEEEECH
Confidence 899999998863
No 37
>PLN02626 malate synthase
Probab=97.92 E-value=0.00029 Score=78.39 Aligned_cols=122 Identities=17% Similarity=0.283 Sum_probs=87.7
Q ss_pred cEEEecCCCChhHHHHHHHHHHhcC-------CCceEEEeecCcchhhhHHHHHHhC----CEEEEcCCCc----ccCCC
Q 008319 282 DFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISAS----DGAMVARGDL----GAELP 346 (570)
Q Consensus 282 d~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IiaKIEt~~gv~NldeIl~~s----DgImIgrGDL----g~eig 346 (570)
-||.+|+++++++++.+.+.+...+ ..+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 4899999999999999888775432 4589999999999999999999774 5999999999 33332
Q ss_pred C-------C--C----HHHHH---HHHHHHHHHcCCCEEEEccchhhh--hcCCCcChHH----HhHHHHHHHhCccEEE
Q 008319 347 I-------E--D----VPLLQ---EDIIRRCRSMQKPVIVATNMLESM--IDHPTPTRAE----VSDIAIAVREGADAVM 404 (570)
Q Consensus 347 ~-------~--~----v~~~q---k~Ii~~c~~~gKPvivaTqmLeSM--~~~~~PtrAE----v~Dv~nav~~G~D~vm 404 (570)
. + . ++.++ +.++..|+++|...|-. |---+ ...|.+..+. ..|-.+...+|+|+-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 1 1 2 44444 49999999999997642 11111 0112222111 4566888999999988
Q ss_pred e
Q 008319 405 L 405 (570)
Q Consensus 405 L 405 (570)
+
T Consensus 371 V 371 (551)
T PLN02626 371 A 371 (551)
T ss_pred e
Confidence 7
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.16 E-value=0.00096 Score=78.01 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=94.7
Q ss_pred HHhhhhhh-cCCcEEEecCCCChhHHHHHHHHHHhc--------C---CCceEEEeecCcchhhhHHHHHHhCCEEEEcC
Q 008319 271 EDIKFGVD-NQVDFYAVSFVKDAKVVHELKDYLKSC--------N---ADIHVIVKIESADSIPNLHSIISASDGAMVAR 338 (570)
Q Consensus 271 ~dI~~~~~-~gvd~I~~SfV~sa~dv~~vr~~l~~~--------~---~~i~IiaKIEt~~gv~NldeIl~~sDgImIgr 338 (570)
+.|..+.. +|-=.|++|||.+.+++.++++.+++. | .++++-+|||+|.++--+|++++.+|.+-||-
T Consensus 540 rAilra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGt 619 (748)
T PRK11061 540 RAMLRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGT 619 (748)
T ss_pred HHHHHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEEECc
Confidence 33334443 566679999999999999998877631 2 23779999999999999999999999999999
Q ss_pred CCccc-----CCCC-----------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccE
Q 008319 339 GDLGA-----ELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA 402 (570)
Q Consensus 339 GDLg~-----eig~-----------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~ 402 (570)
.||.- +=+- |.|..+.++++++|+++||||.++.+| ... |.. +--.+..|.|.
T Consensus 620 NDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~----a~d--p~~-----~~~L~glGi~~ 688 (748)
T PRK11061 620 NDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEM----AGD--PMG-----ALLLIGLGYRH 688 (748)
T ss_pred cHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCc----ccC--HHH-----HHHHHHCCCcE
Confidence 99742 1111 357788899999999999999998763 322 333 34667888888
Q ss_pred EEec
Q 008319 403 VMLS 406 (570)
Q Consensus 403 vmLs 406 (570)
+-++
T Consensus 689 lS~~ 692 (748)
T PRK11061 689 LSMN 692 (748)
T ss_pred EccC
Confidence 6554
No 39
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.82 E-value=0.0066 Score=71.99 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=99.6
Q ss_pred CCCCChhhHHHhhhhhhc----CCc---EEEecCCCChhHHHHHHHHHHhc--------C--CCceEEEeecCcchhhhH
Q 008319 262 LPSITDKDWEDIKFGVDN----QVD---FYAVSFVKDAKVVHELKDYLKSC--------N--ADIHVIVKIESADSIPNL 324 (570)
Q Consensus 262 lp~lt~kD~~dI~~~~~~----gvd---~I~~SfV~sa~dv~~vr~~l~~~--------~--~~i~IiaKIEt~~gv~Nl 324 (570)
.|.+.+-..+.|-.|... |.. -|++|||.+.+++..+|+.+.+. | .++.+-+|||+|.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 355555566666544433 632 68999999999999998877532 2 247899999999999999
Q ss_pred HHHHHhCCEEEEcCCCcccC------------C------------CC-----CCHHHHHHHHHHHHHH--cCCCEEEEcc
Q 008319 325 HSIISASDGAMVARGDLGAE------------L------------PI-----EDVPLLQEDIIRRCRS--MQKPVIVATN 373 (570)
Q Consensus 325 deIl~~sDgImIgrGDLg~e------------i------------g~-----~~v~~~qk~Ii~~c~~--~gKPvivaTq 373 (570)
|+|++.+|.+-||-.||.-- + |+ +-|..+.+.+++.|++ .|+||.++.+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 99999999999998886421 1 11 2366777899999998 8999999866
Q ss_pred chhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 374 MLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
| ...|.- +.-++..|.|.+-.|.
T Consensus 829 ~------a~dp~~-----i~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 829 H------GGDPSS-----IEFCHKIGLNYVSCSP 851 (856)
T ss_pred C------cCCHHH-----HHHHHHCCCCEEEECh
Confidence 3 233443 4466788999887763
No 40
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0072 Score=67.81 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=97.5
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHh-------c----CCCceEEEeecCcchhhhHHHHHHhCCEEEE
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-------C----NADIHVIVKIESADSIPNLHSIISASDGAMV 336 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~-------~----~~~i~IiaKIEt~~gv~NldeIl~~sDgImI 336 (570)
-..+.|-.|..+|-=.|++|+|.+.++++++|+.+++ . ++++.+=.|||+|.+.-.+|.+++.+|-+=|
T Consensus 373 tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakevDFfSI 452 (574)
T COG1080 373 TQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEVDFFSI 452 (574)
T ss_pred HHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhCCEeee
Confidence 3445556677788888999999999999999987752 1 2368899999999999999999999999999
Q ss_pred cCCCcc-----cCCCC-----------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCc
Q 008319 337 ARGDLG-----AELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (570)
Q Consensus 337 grGDLg-----~eig~-----------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 400 (570)
|-.||. ++=+- |.|..+.++++..++++||||+++.. |.--+ .- +--.+-.|.
T Consensus 453 GTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGE----lAgD~--~a-----~plLlGlGl 521 (574)
T COG1080 453 GTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGE----LAGDP--AA-----TPLLLGLGL 521 (574)
T ss_pred cccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechh----hccCh--hh-----HHHHHhcCc
Confidence 999974 22111 46888889999999999999998754 33222 21 234566777
Q ss_pred cEEEec
Q 008319 401 DAVMLS 406 (570)
Q Consensus 401 D~vmLs 406 (570)
|-+-+|
T Consensus 522 dElSms 527 (574)
T COG1080 522 DELSMS 527 (574)
T ss_pred chhccC
Confidence 765554
No 41
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.31 E-value=0.043 Score=59.35 Aligned_cols=121 Identities=26% Similarity=0.260 Sum_probs=75.3
Q ss_pred hHHHhhhhhhcCCcEEEecC-------CCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCC
Q 008319 269 DWEDIKFGVDNQVDFYAVSF-------VKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGD 340 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~Sf-------V~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGD 340 (570)
..+.++...+.|+|+|.+.. ..++.+...+.+++++. +++||+ .|-|.+....+.+ .=+|+|++|+|-
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 34555666789999999853 23333566677777664 577887 8888777665554 349999999886
Q ss_pred cccCC-------CCCCHHHHHHHHHHHHHHc-------CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 341 LGAEL-------PIEDVPLLQEDIIRRCRSM-------QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 341 Lg~ei-------g~~~v~~~qk~Ii~~c~~~-------gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
=+... +++.+. +..+....++++ +.|+|.+.- .-+ -.|++.|+..|+|++|+.
T Consensus 219 Gs~~~t~~~~g~g~p~~~-ai~~~~~a~~~~l~~~~~~~vpVIAdGG---------I~~---~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 219 GAACTSRGVLGIGVPMAT-AIADVAAARRDYLDETGGRYVHVIADGG---------IGT---SGDIAKAIACGADAVMLG 285 (368)
T ss_pred CcCCCCcccCCCCcCHHH-HHHHHHHHHHHhhhhhcCCCCeEEEeCC---------CCC---HHHHHHHHHcCCCeeccc
Confidence 21111 222221 112222223332 689886432 222 358999999999999974
No 42
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.99 E-value=0.03 Score=66.57 Aligned_cols=135 Identities=19% Similarity=0.153 Sum_probs=99.6
Q ss_pred CCCCCChhhHHHhhhhhh----cCCc---EEEecCCCChhHHHHHHHHHH--------hcCC--CceEEEeecCcchhhh
Q 008319 261 NLPSITDKDWEDIKFGVD----NQVD---FYAVSFVKDAKVVHELKDYLK--------SCNA--DIHVIVKIESADSIPN 323 (570)
Q Consensus 261 ~lp~lt~kD~~dI~~~~~----~gvd---~I~~SfV~sa~dv~~vr~~l~--------~~~~--~i~IiaKIEt~~gv~N 323 (570)
..|.+.+-..+.|..|.. .|.+ -|++|+|.+.+++..+++.+. +.|. ++++-.|||+|.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 346666666666655433 4643 489999999999999887652 2232 4789999999999999
Q ss_pred HHHHHHhCCEEEEcCCCcccCC-CC----------------------------CCHHHHHHHHHHHHHH--cCCCEEEEc
Q 008319 324 LHSIISASDGAMVARGDLGAEL-PI----------------------------EDVPLLQEDIIRRCRS--MQKPVIVAT 372 (570)
Q Consensus 324 ldeIl~~sDgImIgrGDLg~ei-g~----------------------------~~v~~~qk~Ii~~c~~--~gKPvivaT 372 (570)
+|+|++.+|.+-||-.||.--+ ++ +-|..+.+..++++++ .|+|++++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 9999999999999988874211 11 1366777889999998 799999976
Q ss_pred cchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
++ ...|.- +.-++..|.|.+-.|
T Consensus 834 E~------ggdp~~-----i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EH------GGDPAS-----IEFCHKVGLDYVSCS 856 (879)
T ss_pred CC------ccCHHH-----HHHHHHCCCCEEEEC
Confidence 52 334444 556788899998877
No 43
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.96 E-value=0.11 Score=55.89 Aligned_cols=125 Identities=24% Similarity=0.297 Sum_probs=82.9
Q ss_pred ChhhHHHhhhhhhcCCcEEEe--cCCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCCcc
Q 008319 266 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~--SfV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGDLg 342 (570)
.+.|++.++..++.|+|+|.+ +...+...+..++ ++++...++.||+ .|-|.++.++|-+ .-+|+|-||=|-=+
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik-~ik~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIK-KIKKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHH-HHHHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHH-HHHHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 345677777778899999877 4666666565555 4555555777777 9999999887544 22999999855322
Q ss_pred cC-------CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 343 AE-------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 343 ~e-------ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+- +|.+ -..+..+..+.++++++|+|- ....- ---|++-|+..|+|+|||-
T Consensus 183 iCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIA---------DGGi~---~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 183 ICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIA---------DGGIR---TSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp TBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEE---------ESS-S---SHHHHHHHHHTT-SEEEES
T ss_pred ccccccccccCCc-HHHHHHHHHHHhhhccCceee---------cCCcC---cccceeeeeeecccceeec
Confidence 22 1233 334555777888889999984 33322 2568999999999999984
No 44
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.40 E-value=0.4 Score=50.96 Aligned_cols=123 Identities=27% Similarity=0.384 Sum_probs=77.4
Q ss_pred hhhHHHhhhhhhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHh-CCEEEEc--CCCc
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RGDL 341 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDgImIg--rGDL 341 (570)
+.+.+.++..++.|+|+|.+++-. +.+.+.++-+.+++...++.|++ .+.|.+.... .++. +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~---l~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARD---LIDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHH---HHhcCCCEEEECCCCCcC
Confidence 566777888889999999886532 22344444444555555677776 6666555444 4445 9999984 3321
Q ss_pred cc-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 342 GA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 342 g~-----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
.. ..+.+. ..+...+.+.++..++|+|-+ ....+ -.|++.++..|+|++|+
T Consensus 170 ~~t~~~~g~g~p~-~~~i~~v~~~~~~~~vpVIA~---------GGI~~---~~di~kAla~GA~~Vmi 225 (325)
T cd00381 170 CTTRIVTGVGVPQ-ATAVADVAAAARDYGVPVIAD---------GGIRT---SGDIVKALAAGADAVML 225 (325)
T ss_pred cccceeCCCCCCH-HHHHHHHHHHHhhcCCcEEec---------CCCCC---HHHHHHHHHcCCCEEEe
Confidence 10 012222 234456677777889999843 33322 35789999999999998
No 45
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=95.36 E-value=0.054 Score=60.47 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHhcCC-----------------------CceEEEeecCcchhhhHHHHHHh-C---C
Q 008319 280 QVDFYAVSFVKDAKVVHELKDYLKSCNA-----------------------DIHVIVKIESADSIPNLHSIISA-S---D 332 (570)
Q Consensus 280 gvd~I~~SfV~sa~dv~~vr~~l~~~~~-----------------------~i~IiaKIEt~~gv~NldeIl~~-s---D 332 (570)
.+-.|.+||.++++|+.++..+.++.+- .+.||.-+||.+++.|.++|++. . +
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 5667899999999999998888776641 35799999999999999999987 2 1
Q ss_pred ----EEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 008319 333 ----GAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 333 ----gImIgrGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
-||+|+.|=+.+.|+ -.+..+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 689999999999887 35778999999999999999875
No 46
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.93 E-value=0.49 Score=53.17 Aligned_cols=124 Identities=25% Similarity=0.318 Sum_probs=79.5
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCC--CChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHh-CCEEEEc--CC
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RG 339 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV--~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDgImIg--rG 339 (570)
++.+.+.+...++.|+|.|.+... ++...+..++. +.+.-.++.|+| -+-|++... ..+++ +|+|.+| +|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~---~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAK---NLIDAGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHH---HHHHcCCCEEEECCcCC
Confidence 345677777788999999997753 34433333333 333334688888 565655544 44455 9999864 66
Q ss_pred Cc-----ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 340 DL-----GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 340 DL-----g~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
-- -...|.+.+ .+...+.+.|++.|.|+|. ....-+ -.|++.|+..|+|++|+.
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIa---------dGGi~~---~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPCIA---------DGGIKN---SGDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeEEe---------cCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 21 222344432 3445777889999999885 233333 357999999999999985
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.70 E-value=0.24 Score=53.62 Aligned_cols=120 Identities=23% Similarity=0.306 Sum_probs=69.5
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCCcc
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGDLg 342 (570)
+..+.+++.|+|+|++. |+....+...+.+++++. +++||+ .|-|.+....+-+ .=+|+||+|||--.
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGAN 221 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCc
Confidence 44466679999999875 222333455666766654 577887 6666554443333 23999999986522
Q ss_pred cCCCC--CCHH--HHHHHHHHHHHH----cC---CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 343 AELPI--EDVP--LLQEDIIRRCRS----MQ---KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 343 ~eig~--~~v~--~~qk~Ii~~c~~----~g---KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..-.. ..+| .+...+..+++. .| +|||.+. ..-+ -.|++.|+..|+|++|+.
T Consensus 222 ~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdG---------GI~t---g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 222 TTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADG---------GIET---SGDLVKAIACGADAVVLG 284 (369)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeC---------CCCC---HHHHHHHHHcCCCEeeeH
Confidence 11100 1122 122222222222 33 8988643 3333 358999999999999984
No 48
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=94.46 E-value=0.13 Score=57.43 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=79.2
Q ss_pred hcCCcEEEecCCCChhHHHHHHHHHHhcC--------------CCceEEEeecCcchhhhHHHHHHh--C--------CE
Q 008319 278 DNQVDFYAVSFVKDAKVVHELKDYLKSCN--------------ADIHVIVKIESADSIPNLHSIISA--S--------DG 333 (570)
Q Consensus 278 ~~gvd~I~~SfV~sa~dv~~vr~~l~~~~--------------~~i~IiaKIEt~~gv~NldeIl~~--s--------Dg 333 (570)
...+..+.+|+.++++|+.++..++++.+ ..+.|+.-+||.+.+.|.++|++. . --
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 35666789999999999999877776554 147899999999999999999976 1 27
Q ss_pred EEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 008319 334 AMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 334 ImIgrGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
||+|+.|=+.+-|+ -.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999988887 36889999999999999999875
No 49
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.31 E-value=0.73 Score=49.30 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=80.4
Q ss_pred ChhhHHHhhhhhh--cCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCC
Q 008319 266 TDKDWEDIKFGVD--NQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGD 340 (570)
Q Consensus 266 t~kD~~dI~~~~~--~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGD 340 (570)
++.|++.++.-++ .|+|+|.+- .-.+...+..+ +++++.-.++.||| .+-|+++.++|-+ .=+|++-||=|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~i-k~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGp 182 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFV-AKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGP 182 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 5677777776666 599998764 22333333333 44555555666666 8999999877543 339999876332
Q ss_pred cccCC-------CCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 341 LGAEL-------PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 341 Lg~ei-------g~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
=++-. |.+ -..+..+..+.+++.|+|+|- .....+ --|++-|+..|+|++||-
T Consensus 183 GSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIA---------DGGi~~---sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 183 GSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVS---------DGGCTV---PGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CccccCccccccChh-HHHHHHHHHHHHHHcCCCEEe---------cCCccc---ccHHHHHHHcCCCEEEeC
Confidence 22211 222 223335677788889999983 333322 468999999999999985
No 50
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.40 E-value=1.6 Score=46.72 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=79.7
Q ss_pred ChhhHHHhhhhhhc--CCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEe-ecCcchhhhHHHHHHhCCEEEEcCCC
Q 008319 266 TDKDWEDIKFGVDN--QVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARGD 340 (570)
Q Consensus 266 t~kD~~dI~~~~~~--gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDgImIgrGD 340 (570)
++.|++.++..++. ++|+|.+- .-.+...+..+ +++++.-.+..||+= |-|+++.+++-+ .=+|+|.||=|-
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~i-k~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGp 181 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFV-KLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIGP 181 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEcccC
Confidence 56778877777776 59998764 22333333333 445554456788886 999998876543 349999987332
Q ss_pred cccCCCC--CC----HHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 341 LGAELPI--ED----VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 341 Lg~eig~--~~----v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
=++..+- .. -..+..++.++++..++|+|. ..... .-.|++-|+..|+|++|+-
T Consensus 182 GSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa---------DGGIr---~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 182 GSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIIS---------DGGCT---CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEE---------cCCcC---chhHHHHHHHcCCCEEEEC
Confidence 2222222 11 223334566666677888884 33332 2468999999999999996
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.35 E-value=1.6 Score=48.39 Aligned_cols=126 Identities=24% Similarity=0.290 Sum_probs=79.7
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEc--CCCc
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGDL 341 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIg--rGDL 341 (570)
.+.+.+.+...++.|+|+|.+-..+ ....+.+.-+.+.+.-.++.|++ -+-|+++..++-+ .=+|+|-+| ||--
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGSI 299 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCcC
Confidence 4566777777788999999876532 11223332233444334677777 7777777666544 238999866 5521
Q ss_pred cc-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 342 GA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 342 g~-----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.. ..|.+.+ .+..++.+.|++.+.|+|. ....-+ -.|++.|+..|+|++|+-
T Consensus 300 ~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpvia---------dGGi~~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 300 CTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIA---------DGGIRY---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred CccceecCCCccHH-HHHHHHHHHHhhcCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEC
Confidence 11 1233332 4556677888889999885 233333 357999999999999985
No 52
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.22 E-value=1.5 Score=46.26 Aligned_cols=114 Identities=19% Similarity=0.212 Sum_probs=68.7
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 347 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~ 347 (570)
..+.++.+++.++++|.++|-...+.+..+ +.. .+++++.+=|. +......+. +|+|.+--.+-+-..+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~l----k~~--g~~v~~~v~s~---~~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRL----KEN--GVKVIPVVASV---ALAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHH----HHc--CCEEEEEcCCH---HHHHHHHHcCCCEEEEECcccCCCCCC
Confidence 345667778999999998876543333333 333 47888887554 334444444 99998732233333332
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 348 ~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.......+++.+ ..++|+|.+.- .-+ -.|++.++..|+|++++.
T Consensus 147 ~~~~~ll~~v~~---~~~iPviaaGG---------I~~---~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 147 LTTMALVPQVVD---AVSIPVIAAGG---------IAD---GRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CcHHHHHHHHHH---HhCCCEEEECC---------CCC---HHHHHHHHHcCCCEeecc
Confidence 222333344433 34799997533 222 346778888999999985
No 53
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.03 E-value=1.4 Score=49.33 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=84.9
Q ss_pred CCChhhHHHhhhhhhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEc--CC
Q 008319 264 SITDKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RG 339 (570)
Q Consensus 264 ~lt~kD~~dI~~~~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIg--rG 339 (570)
.+++++.+.+..-++.|+|.|++--.+ ....+.++-+.+++...++.||| -|-|.++..++.+ .=+|+|-|| +|
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~g 300 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPG 300 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCC
Confidence 345566677777778999998775221 12333444455666666899999 9999999888766 239998855 33
Q ss_pred CcccCCCC--CCHH--HHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 340 DLGAELPI--EDVP--LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 340 DLg~eig~--~~v~--~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
-....-+. .-+| .+..++.+.|++.|+|||- .....+. .|++.++..|+|++|+.
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via---------~ggi~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA---------DGGVRHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEe---------cCCCCCH---HHHHHHHHcCCCeeecc
Confidence 32222221 1122 3345677777788999994 4444443 57889999999999984
No 54
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=92.86 E-value=0.39 Score=57.65 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=79.8
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHhcC--------CCceEEEeecCcchhhhHHHHHHh-C---------------CEE
Q 008319 279 NQVDFYAVSFVKDAKVVHELKDYLKSCN--------ADIHVIVKIESADSIPNLHSIISA-S---------------DGA 334 (570)
Q Consensus 279 ~gvd~I~~SfV~sa~dv~~vr~~l~~~~--------~~i~IiaKIEt~~gv~NldeIl~~-s---------------DgI 334 (570)
..+..+.+|+.++++|+.++..++++.| ..+.|++-.||.+.++|.++|++. . --|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 3556789999999999999988887765 257899999999999999999987 1 169
Q ss_pred EEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 335 MVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 335 mIgrGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
|+|..|=+.+-|+ -.+..+|+++.+.|+++|.++...
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~F 605 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLF 605 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 9999998888887 368899999999999999998763
No 55
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.76 E-value=1.6 Score=49.30 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=78.0
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCC--CChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEc--CCC
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGD 340 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV--~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIg--rGD 340 (570)
.+.+++.++..++.|+|+|++--- .+...+..+ +++++...+..||+ -|-|.+...++.+ .=+|+|.++ +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i-~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMI-KYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH-HHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 356677788888999999987532 222222222 33444445677877 4999888666654 239999986 442
Q ss_pred cccC-----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 341 LGAE-----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 341 Lg~e-----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
-... .|.+.+. ....+-+.+++.++|||.. ...-+ -.|++.|+..|+|++|+-
T Consensus 323 ~~~t~~~~~~g~~~~~-~i~~~~~~~~~~~vpVIad---------GGI~~---~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 323 ICTTQEVCAVGRGQAT-AVYKVASIAAQHGVPVIAD---------GGISN---SGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccCccccccCCCccc-HHHHHHHHHHhcCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEc
Confidence 1111 2223322 2333566677789999864 33322 357999999999999984
No 56
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=92.72 E-value=0.35 Score=54.68 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=99.7
Q ss_pred CcEEEecCCCChhHHHHHHHHHHhcC-----------CCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcc-----cC
Q 008319 281 VDFYAVSFVKDAKVVHELKDYLKSCN-----------ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLG-----AE 344 (570)
Q Consensus 281 vd~I~~SfV~sa~dv~~vr~~l~~~~-----------~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg-----~e 344 (570)
-=-|.+|+|.+.+++++.++++.+.. ...++=+|+|-|.-+-.++++++.+|-+-||-.||. ++
T Consensus 559 ~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvD 638 (756)
T COG3605 559 NLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVD 638 (756)
T ss_pred CceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHh
Confidence 34689999999999999998875432 235688999999999999999999999999999974 33
Q ss_pred CCC-----------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCC
Q 008319 345 LPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 413 (570)
Q Consensus 345 ig~-----------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~ 413 (570)
=+- +.+..+.|+|...|.++|+||-++.+ |.-.| -- ..-.+..|++.+-++ -|++|+
T Consensus 639 R~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGE----MAg~P--l~-----A~~LigLGfrslSMn-~~~v~~ 706 (756)
T COG3605 639 RNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGE----MAGDP--LS-----AMALIGLGFRSLSMN-PRSVGP 706 (756)
T ss_pred cCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhh----hcCCh--HH-----HHHHHhcCcCccccC-cccccc
Confidence 232 24667889999999999999998754 44333 22 335578899998776 456765
Q ss_pred CHHHHHHHHHHHHHHhh
Q 008319 414 FPLKAVKVMHTVALRTE 430 (570)
Q Consensus 414 yP~eaV~~m~~I~~~aE 430 (570)
||+|-.-+..++
T Consensus 707 -----VK~ml~~ld~~~ 718 (756)
T COG3605 707 -----VKYLLRHLDLAE 718 (756)
T ss_pred -----HHHHHHhccHHH
Confidence 666655444443
No 57
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.63 E-value=0.5 Score=57.07 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=98.9
Q ss_pred CcEEEecCCCChhHHHHHHHHHHhcC-----CCceEEEeecCcchhhhHHHHHHh-C----------------CEEEEcC
Q 008319 281 VDFYAVSFVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSIPNLHSIISA-S----------------DGAMVAR 338 (570)
Q Consensus 281 vd~I~~SfV~sa~dv~~vr~~l~~~~-----~~i~IiaKIEt~~gv~NldeIl~~-s----------------DgImIgr 338 (570)
+..+.+|+.+++.|+.++.-+.++.| ..+.|++-.||.+.++|.++|++. . --||+|.
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 33468999999999999888777643 247899999999999999999976 1 1799999
Q ss_pred CCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC
Q 008319 339 GDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (570)
Q Consensus 339 GDLg~eig~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (570)
.|=+.+-|+ -.+..+|.++.+.|+++|..+...=-.=.|+-....|+..-+..--.....|.=-+=..||+-.-+|
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky 705 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNF 705 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhc
Confidence 998888887 3688999999999999999987643333333334444442211111111223333445666665566
Q ss_pred HHH--HHHHHHHH
Q 008319 415 PLK--AVKVMHTV 425 (570)
Q Consensus 415 P~e--aV~~m~~I 425 (570)
+.. |.+.+...
T Consensus 706 ~~~~~a~~~le~~ 718 (974)
T PTZ00398 706 GLKGICLRTWELY 718 (974)
T ss_pred CChHHHHHHHHHH
Confidence 543 45555543
No 58
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.43 E-value=5.6 Score=40.25 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=90.4
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCC---C
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE---D 349 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~---~ 349 (570)
|..-.+.|+|.|.+- +++..+..+.-+++++.|....+.-+-+| -++.++.++..+|.|++ ++++-|+. -
T Consensus 78 i~~~~~~gad~I~~H-~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf~GQ~f 150 (223)
T PRK08745 78 VPDFADAGATTISFH-PEASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGFGGQAF 150 (223)
T ss_pred HHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCCCCccc
Confidence 444457899998766 45556676777888888988888888888 57899999999999998 77777762 1
Q ss_pred HHHHHH---HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHH
Q 008319 350 VPLLQE---DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 350 v~~~qk---~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (570)
.+...+ ++-+...+.+..+-+. +.... + ...+..+...|+|.+++.+--.....|.++++.|++..
T Consensus 151 i~~~l~KI~~l~~~~~~~~~~~~Ie-------VDGGI-~---~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 151 IPSALDKLRAIRKKIDALGKPIRLE-------IDGGV-K---ADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeeEE-------EECCC-C---HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 222222 2223333456554332 22221 1 12355678899999988532111245899999998876
Q ss_pred HHh
Q 008319 427 LRT 429 (570)
Q Consensus 427 ~~a 429 (570)
.++
T Consensus 220 ~~~ 222 (223)
T PRK08745 220 AAV 222 (223)
T ss_pred Hhc
Confidence 543
No 59
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.31 E-value=12 Score=37.60 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=98.8
Q ss_pred CCChhhHHH-hhhhhhcCCcEEEecCCCCh------hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEE
Q 008319 264 SITDKDWED-IKFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAM 335 (570)
Q Consensus 264 ~lt~kD~~d-I~~~~~~gvd~I~~SfV~sa------~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgIm 335 (570)
.+|..++.. ++...+.|+|.|-+.+-... ++..++-+++.+.+.+..+.+..=+ +.+.++...+. .|.|-
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEE
Confidence 346666644 45556789999988887766 5655555556555555666565533 24445555554 57666
Q ss_pred EcCCCcccC---------CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEe
Q 008319 336 VARGDLGAE---------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVML 405 (570)
Q Consensus 336 IgrGDLg~e---------ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmL 405 (570)
+. +..+ .+.+.....-...++.+++.|.++.+.+.. +..+.-+..++.+++. +...|+|.+.|
T Consensus 93 i~---~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 93 IF---DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EE---EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 54 1111 222335556668888999999998876321 1111234455555554 66789999998
Q ss_pred cccccCCCCHHHHHHHHHHHHHHhh
Q 008319 406 SGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 406 s~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
. .|.=.-+|.+.-+.++.+.....
T Consensus 166 ~-Dt~G~~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 166 K-DTVGLATPEEVAELVKALREALP 189 (265)
T ss_pred c-hhcCCcCHHHHHHHHHHHHHhCC
Confidence 5 66666889998888888876655
No 60
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.03 E-value=5.6 Score=40.43 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=77.5
Q ss_pred HhhhhhhcCCcEEEecC--CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEE---cCCCcccCCC
Q 008319 272 DIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMV---ARGDLGAELP 346 (570)
Q Consensus 272 dI~~~~~~gvd~I~~Sf--V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImI---grGDLg~eig 346 (570)
-++.+.+.|+|+|.++- ++..++..++.+++++.|-+..+...=+|+ .+.++.+++.+|++++ -+|..+
T Consensus 93 ~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~g~---- 166 (244)
T PRK13125 93 FLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPATGV---- 166 (244)
T ss_pred HHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCCCC----
Confidence 36667789999999874 455678888888898888887777766664 6789999999998863 344432
Q ss_pred CCCHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 347 IEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 347 ~~~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
++..-....++..++. .+|+.+ ....-+. .++..+...|+|+++..
T Consensus 167 --~~~~~~~~~i~~lr~~~~~~~i~v---------~gGI~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 167 --PLPVSVERNIKRVRNLVGNKYLVV---------GFGLDSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred --CchHHHHHHHHHHHHhcCCCCEEE---------eCCcCCH---HHHHHHHHcCCCEEEEC
Confidence 2333444455555554 367654 2333233 35667788999998874
No 61
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.97 E-value=4.3 Score=40.89 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=90.0
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCC---
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE--- 348 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~--- 348 (570)
.|..-.+.|+|+|.+- +++..++.++-+++++.|....+.-+=+| -++.++.++..+|.+++ ++++-|..
T Consensus 73 ~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv----MtV~PGfgGq~ 145 (220)
T PRK08883 73 IIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL----MSVNPGFGGQS 145 (220)
T ss_pred HHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EEecCCCCCce
Confidence 3444457899988665 46666777777888888988888888887 57899999999999998 56665542
Q ss_pred CHHHHHHH---HHHHHHHcC--CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHH
Q 008319 349 DVPLLQED---IIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (570)
Q Consensus 349 ~v~~~qk~---Ii~~c~~~g--KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (570)
-++...++ +-+...+.| .|+.+. -.-. ...+...+..|+|++.+.+.-...+.|.++++.++
T Consensus 146 fi~~~lekI~~l~~~~~~~~~~~~I~vd--------GGI~-----~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~ 212 (220)
T PRK08883 146 FIPHTLDKLRAVRKMIDESGRDIRLEID--------GGVK-----VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMR 212 (220)
T ss_pred ecHhHHHHHHHHHHHHHhcCCCeeEEEE--------CCCC-----HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHH
Confidence 22223232 222223333 555432 1222 22456778899999988644322456899999988
Q ss_pred HHHHH
Q 008319 424 TVALR 428 (570)
Q Consensus 424 ~I~~~ 428 (570)
+...+
T Consensus 213 ~~~~~ 217 (220)
T PRK08883 213 AELAK 217 (220)
T ss_pred HHHHh
Confidence 76543
No 62
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.80 E-value=3.9 Score=40.60 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=73.7
Q ss_pred hHHHhhhhhhcCCcEEEec--CCCCh--hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCccc
Q 008319 269 DWEDIKFGVDNQVDFYAVS--FVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~S--fV~sa--~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~ 343 (570)
+.+.++.+.+.|+|+|.+- ...++ +.+.++.+.+++. ..+.+++-+-|.+ .+....+. +|.+.+..+++..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~e---e~~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLE---EGLAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHH---HHHHHHHcCCCEEEcCCceeec
Confidence 3355777889999987653 22223 5556666666553 5667776443322 22222222 7888775544432
Q ss_pred CC--CCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHH
Q 008319 344 EL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (570)
Q Consensus 344 ei--g~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~ 421 (570)
.- ....-...-+++.. ..++|++.+ ...-+. .|+..++..|+|++++.+ ++-+ |.+..+.
T Consensus 153 ~~~~~~~~~~~~i~~i~~---~~~iPvia~---------GGI~t~---~~~~~~l~~GadgV~iGs--ai~~-~~~~~~~ 214 (221)
T PRK01130 153 ETKKPEEPDFALLKELLK---AVGCPVIAE---------GRINTP---EQAKKALELGAHAVVVGG--AITR-PEEITKW 214 (221)
T ss_pred CCCCCCCcCHHHHHHHHH---hCCCCEEEE---------CCCCCH---HHHHHHHHCCCCEEEEch--HhcC-CHHHHHH
Confidence 11 11111222223322 237999864 233232 456677889999999973 4433 5556666
Q ss_pred HHHHH
Q 008319 422 MHTVA 426 (570)
Q Consensus 422 m~~I~ 426 (570)
+.+..
T Consensus 215 ~~~~~ 219 (221)
T PRK01130 215 FVDAL 219 (221)
T ss_pred HHHHh
Confidence 55543
No 63
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.41 E-value=3.9 Score=44.99 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=77.0
Q ss_pred ChhhHHHhhhhhhcCCcEEEe--cCCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCCcc
Q 008319 266 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 342 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~--SfV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGDLg 342 (570)
++.+.+.++..++.|+|+|++ +.-. .+.+.++-+.+++.-.+..+|+ -|-|.++..++.+. =+|+|.+|-|-=+
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs 227 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGS 227 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 455677778888999999983 3322 2334333344554444565644 78888877666552 3999998743322
Q ss_pred c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 343 A-------ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 343 ~-------eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+ ..|.+.+. +...+.+.+++.+.|||. ....-+ -.|++.|+..|+|+||+-
T Consensus 228 ~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIA---------dGGI~~---~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIA---------DGGIRF---SGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEE---------eCCCCC---HHHHHHHHHcCCCEEEEc
Confidence 1 12333222 223345566677899885 333333 357999999999999984
No 64
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=91.26 E-value=1.1 Score=52.74 Aligned_cols=112 Identities=21% Similarity=0.115 Sum_probs=87.5
Q ss_pred EEEecCCCChhHHHHHHHHHH---hcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCC-C-----------C
Q 008319 283 FYAVSFVKDAKVVHELKDYLK---SCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAEL-P-----------I 347 (570)
Q Consensus 283 ~I~~SfV~sa~dv~~vr~~l~---~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~ei-g-----------~ 347 (570)
.+.+||+++..+..... ... ..+.+.++..|||.+.++-..+||++..|+.=+|.+||.--. | .
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 46888999988887766 333 112238899999999999999999999999999999975311 2 2
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 348 ~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+.|-.+.+..+..|+..++.++++.|.-+ .|.-| .-++..|.|+|.++
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~~~~------~p~~a-----~~~~e~Gi~~Vs~n 723 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQAPS------DPHGA-----IFLVELGIDSVSLN 723 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEeccCCC------CcHHH-----HHHHHcCCCeEecC
Confidence 46888889999999999999999887333 24443 36789999999965
No 65
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.17 E-value=4.3 Score=40.28 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=66.6
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 347 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~ 347 (570)
..+.++.+.+.|+|+|.++.-...+.++.++ + .++.++.++.+. +.+..+.+. +|+|.+....-+-..+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~----~--~~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~~ 139 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPPAEVVERLK----A--AGIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRGT 139 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHHHH----H--cCCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCCc
Confidence 4466677788999999998765444333333 2 257788887664 344555444 79887733221111111
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 348 ~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.. ......++.+++ .++|++.+ ...-+ ..|+..++..|+|++++.
T Consensus 140 ~~--~~~~~~i~~i~~~~~~Pvi~~---------GGI~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 140 FD--IGTFALVPEVRDAVDIPVIAA---------GGIAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred cc--cCHHHHHHHHHHHhCCCEEEE---------CCCCC---HHHHHHHHHcCCcEEEEc
Confidence 11 112334444443 37898864 22222 346777788999999995
No 66
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=90.98 E-value=11 Score=38.47 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=92.1
Q ss_pred HhhhhhhcCCcEEEecCCCCh-hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCC--
Q 008319 272 DIKFGVDNQVDFYAVSFVKDA-KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 348 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa-~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~-- 348 (570)
.|..-.+.|+|+|.+-+ +.. .+...+-+++++.|....+.-+-+|+ ++.++.++..+|.|+| ++++-|+.
T Consensus 74 ~i~~~~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----MsV~PGf~GQ 146 (229)
T PRK09722 74 YIDQLADAGADFITLHP-ETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MTVDPGFAGQ 146 (229)
T ss_pred HHHHHHHcCCCEEEECc-cCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EEEcCCCcch
Confidence 34444578999886653 533 46666668888999998888888884 6899999999999998 77776662
Q ss_pred -CHHHHHHHHH---HHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCC--CCHHHHHHHH
Q 008319 349 -DVPLLQEDII---RRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAVKVM 422 (570)
Q Consensus 349 -~v~~~qk~Ii---~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G--~yP~eaV~~m 422 (570)
-.+...++|- +...+.|..+.+. +.... + ..-+..+...|+|.+++.+---.| +-|.++++.|
T Consensus 147 ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGGI-~---~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l 215 (229)
T PRK09722 147 PFIPEMLDKIAELKALRERNGLEYLIE-------VDGSC-N---QKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIM 215 (229)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEE-------EECCC-C---HHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHH
Confidence 2233333333 3333455554332 23222 1 123456788999999885321234 3589999999
Q ss_pred HHHHHHhh
Q 008319 423 HTVALRTE 430 (570)
Q Consensus 423 ~~I~~~aE 430 (570)
++...++.
T Consensus 216 ~~~~~~~~ 223 (229)
T PRK09722 216 TAQIEAAT 223 (229)
T ss_pred HHHHHHhh
Confidence 98776654
No 67
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=90.85 E-value=3.6 Score=44.15 Aligned_cols=204 Identities=17% Similarity=0.252 Sum_probs=123.7
Q ss_pred hhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHH----------------HHhcCCCceEEEeecCcchhhhHHHHHHh
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY----------------LKSCNADIHVIVKIESADSIPNLHSIISA 330 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~----------------l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 330 (570)
+.+++.+..|++.|+|.|.+. .+++..++++ +...+.....+.+|.+++..+.+.+..+.
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~----~~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVD----EEDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEEC----HHHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 678899999999999998776 3555555442 12223457788899999999999999988
Q ss_pred CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccccc
Q 008319 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 331 sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (570)
.|.++|--.|-.+ +|+|.+ |.+..+.++ ++.. .-+..|..-.+..+..|+|+|+|..+.
T Consensus 89 ~~~viv~~~dW~i-IPlEnl-------IA~~~~~~~-l~a~-----------v~~~~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDWTI-IPLENL-------IADLGQSGK-IIAG-----------VADAEEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCCcE-ecHHHH-------HhhhcCCce-EEEE-----------eCCHHHHHHHHHHhccCCCeEEECCCC-
Confidence 8988886555433 566553 444422333 3321 233456666788999999999998653
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCC----------CCC----CcccCCC--------CChhHHHHHHH--------HH
Q 008319 411 HGKFPLKAVKVMHTVALRTESSLPVSI----------TPP----TQFSAHK--------SHMGDMFAFHS--------TT 460 (570)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~aE~~~~~~~----------~~~----~~~~~~~--------~~~~~~ia~~a--------v~ 460 (570)
| ..++-+...+.+.-..+.... +-+ +....+. +...-.|-.++ ..
T Consensus 148 ----~-~ei~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~ 222 (344)
T PRK02290 148 ----P-NEIKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVAS 222 (344)
T ss_pred ----H-HHHHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccC
Confidence 3 445555555554111111000 000 0000000 00000000000 01
Q ss_pred HHhhcCC-cEEEEcCC-hHHHHHHHhcCCCCeEEEEeCCHHH
Q 008319 461 MANTLNT-PIIVFTRT-GSMAVILSHYRPSSTIFAFTNQERI 500 (570)
Q Consensus 461 ~a~~~~a-~Iiv~T~s-G~tA~~ls~~RP~~pIiavt~~~~t 500 (570)
-.+++|| +.=.|+.. |..+++||-.|..-.|+++-.+.++
T Consensus 223 RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~t 264 (344)
T PRK02290 223 RPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNT 264 (344)
T ss_pred CCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCE
Confidence 2345788 87777776 8888999999999999999988654
No 68
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=90.34 E-value=3.6 Score=44.31 Aligned_cols=198 Identities=17% Similarity=0.249 Sum_probs=122.2
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhHHHHHHHH-------------------------HHhcCCCceEEEeecCcchhhhH
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY-------------------------LKSCNADIHVIVKIESADSIPNL 324 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~-------------------------l~~~~~~i~IiaKIEt~~gv~Nl 324 (570)
++.+..|++.|+|.|.++- +++..++++ +...+.++.....|.+++-++.+
T Consensus 15 k~~vt~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a 90 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEA 90 (354)
T ss_pred HHHHHHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHH
Confidence 7888899999999988773 333333321 12234556678899999999999
Q ss_pred HHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEE
Q 008319 325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM 404 (570)
Q Consensus 325 deIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm 404 (570)
-+..+..|.+++--.|-.+ +|+|.+ |.+....+.-++.. ..+-.|..-.+..+..|+|+|+
T Consensus 91 ~~~~~~~~~~iv~~~Dw~i-IPlEnl-------iA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVl 151 (354)
T PF01959_consen 91 CELAKRADYVIVEFRDWTI-IPLENL-------IAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVL 151 (354)
T ss_pred HHHhccCCeEEEEcCCCcE-ecHHHH-------HHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEE
Confidence 9988888888886666654 676654 33333344444432 2345566667899999999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHhhc-CCCCCCC----------CC----CcccCCC--------------------CC
Q 008319 405 LSGETAHGKFPLKAVKVMHTVALRTES-SLPVSIT----------PP----TQFSAHK--------------------SH 449 (570)
Q Consensus 405 Ls~ETA~G~yP~eaV~~m~~I~~~aE~-~~~~~~~----------~~----~~~~~~~--------------------~~ 449 (570)
|..+. | ..++.+...+.+.+. .+..... -+ +....+. +.
T Consensus 152 l~~~d-----~-~ei~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~ 225 (354)
T PF01959_consen 152 LDPDD-----P-AEIKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETH 225 (354)
T ss_pred ECCCC-----H-HHHHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccc
Confidence 98663 3 455556666665322 1111000 00 0000000 00
Q ss_pred hhHHHHHHHHHHHhhcCC-cEEEEcCC-hHHHHHHHhcCCCCeEEEEeCCHHH
Q 008319 450 MGDMFAFHSTTMANTLNT-PIIVFTRT-GSMAVILSHYRPSSTIFAFTNQERI 500 (570)
Q Consensus 450 ~~~~ia~~av~~a~~~~a-~Iiv~T~s-G~tA~~ls~~RP~~pIiavt~~~~t 500 (570)
....+ ..-.+++|| ++=.|+.. |..+++||-.+..-.|+++-.+.++
T Consensus 226 ~~pYv----a~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~t 274 (354)
T PF01959_consen 226 ESPYV----ASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRT 274 (354)
T ss_pred cCCCC----CCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCE
Confidence 00000 012345788 77777776 8888999999999999999988653
No 69
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.24 E-value=6.2 Score=38.23 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=77.2
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHH
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVP 351 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~ 351 (570)
.++.+.+.|+|+|.+.--.+ ++..+..+.+...+ +.+..-+......+.+.++...+|.+.++.-+-|..= +..+
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg--~~~~ 146 (211)
T cd00429 72 YIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG--QKFI 146 (211)
T ss_pred HHHHHHHcCCCEEEECccch-hhHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC--cccC
Confidence 46667789999988876554 33333334444433 4444445333346677888777898888654433211 1111
Q ss_pred -HHHHHHHHHHH-----HcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHH
Q 008319 352 -LLQEDIIRRCR-----SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (570)
Q Consensus 352 -~~qk~Ii~~c~-----~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (570)
...+.+-+.++ ....|+.++ -.-.| .++..+...|+|++...+.-..-..|.++++.+
T Consensus 147 ~~~~~~i~~~~~~~~~~~~~~pi~v~--------GGI~~-----env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 147 PEVLEKIRKLRELIPENNLNLLIEVD--------GGINL-----ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEE--------CCCCH-----HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 11222212111 124788764 22332 347788889999999988776677788887754
No 70
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=89.85 E-value=7.1 Score=39.94 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=44.6
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeec--C-cchhhhHHHHHHh-CCEEEEcCCCc
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE--S-ADSIPNLHSIISA-SDGAMVARGDL 341 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIE--t-~~gv~NldeIl~~-sDgImIgrGDL 341 (570)
.+.+.+.|+|||..+|.. ++..++++.+...-.+..+.-|= | .++++|++++++. ++|+.++|.=+
T Consensus 162 ~~~a~~~GADyikt~~~~---~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~ 231 (258)
T TIGR01949 162 ARLGAELGADIVKTPYTG---DIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF 231 (258)
T ss_pred HHHHHHHCCCEEeccCCC---CHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh
Confidence 356678999999999863 45556666654333343333442 2 3457899999988 99999987544
No 71
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.51 E-value=4 Score=46.14 Aligned_cols=120 Identities=14% Similarity=0.122 Sum_probs=69.5
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhH----HHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCCccc-
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKV----VHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLGA- 343 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~d----v~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGDLg~- 343 (570)
.+.++..++.|+|+|.+. .+... +..++..-+..+.++.|++ .|.|+++.+.+-+ .=+|+|.||-|-=++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c 319 (502)
T PRK07107 244 AERVPALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSIC 319 (502)
T ss_pred HHHHHHHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCc
Confidence 455566678999999887 22222 2233322222233466666 7888888766543 238999996443211
Q ss_pred ------CCCCCCHHHHHHHHHHHHHH----cC--CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 ------ELPIEDVPLLQEDIIRRCRS----MQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 ------eig~~~v~~~qk~Ii~~c~~----~g--KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..|.+.+ .+...+.+++++ .| +|+|. .....+ -.|++-|+..|+|++|+.
T Consensus 320 ~tr~~~~~g~~~~-~ai~~~~~a~~~~~~~~g~~~~via---------dgGir~---~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 320 ITREQKGIGRGQA-TALIEVAKARDEYFEETGVYIPICS---------DGGIVY---DYHMTLALAMGADFIMLG 381 (502)
T ss_pred ccccccCCCccHH-HHHHHHHHHHHHHHhhcCCcceEEE---------cCCCCc---hhHHHHHHHcCCCeeeeC
Confidence 1222222 222234444433 36 78874 333322 468999999999999984
No 72
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=89.15 E-value=9.4 Score=38.14 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=47.0
Q ss_pred CChhhHHH-hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEE----eecCcc-hhhhHHHHHHh-CCEEEEc
Q 008319 265 ITDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV----KIESAD-SIPNLHSIISA-SDGAMVA 337 (570)
Q Consensus 265 lt~kD~~d-I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~Iia----KIEt~~-gv~NldeIl~~-sDgImIg 337 (570)
+++++++. .+.+.+.|+|||.++|..+ +..+++..+... +++++ ++.|.+ .++|+++.++. ++|+.+|
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~---~~~~~~i~~~~~--~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGD---AESFKEVVEGCP--VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCC---HHHHHHHHhcCC--CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 35455554 5667899999999997654 444555544332 33332 222322 56888999988 9999999
Q ss_pred CCCcc
Q 008319 338 RGDLG 342 (570)
Q Consensus 338 rGDLg 342 (570)
|.=+.
T Consensus 215 ~~i~~ 219 (235)
T cd00958 215 RNIFQ 219 (235)
T ss_pred hhhhc
Confidence 86553
No 73
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.01 E-value=15 Score=35.96 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=76.3
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCC-C-CC
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I-ED 349 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig-~-~~ 349 (570)
.+..+.+.|+|+|.+..-.+. +.....+.+...+ ..+..-+......+.+.++...+|.+.++.-+-|..-. + +.
T Consensus 76 ~i~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 76 YVPDFAKAGADIITFHVEASE-HIHRLLQLIKSAG--IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred HHHHHHHcCCCEEEEeeccch-hHHHHHHHHHHcC--CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 445556889999888866543 3333334444444 44444553334567788888889988876533332211 1 11
Q ss_pred HHHHHHHHHHHHHHcCCC--EEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKP--VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKP--vivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I 425 (570)
.....+++-..+...+.| +.++ -.-.| .++..+...|+|++.+.+.-..-.-|.++++.+.++
T Consensus 153 ~~~~i~~~~~~~~~~~~~~~i~v~--------GGI~~-----~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 153 VLEKIRELRKLIDERGLDILIEVD--------GGINA-----DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE--------CCCCH-----HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 222222333333333333 3332 22333 245566668999999876654446788888877765
No 74
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=87.89 E-value=14 Score=39.54 Aligned_cols=126 Identities=20% Similarity=0.284 Sum_probs=75.6
Q ss_pred CChhhHHHhhhhhhcC--CcEEEecC--CCChhHHHHHHHHHHhcCCCceEEEe-ecCcchhhhHHHHHHhCCEEEEcCC
Q 008319 265 ITDKDWEDIKFGVDNQ--VDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARG 339 (570)
Q Consensus 265 lt~kD~~dI~~~~~~g--vd~I~~Sf--V~sa~dv~~vr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDgImIgrG 339 (570)
.+++|++.+..-++.| +|+|.+-- -.+..-+..++. +++.-..+.+|++ +-|.+....+.+ .=+|+|.++=|
T Consensus 91 ~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~G 167 (321)
T TIGR01306 91 VKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGIG 167 (321)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECCC
Confidence 4778888888888888 69887653 233333333433 4443455778888 988877666554 12899998732
Q ss_pred CcccC-----CCCCCHHHHHHH-HHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 340 DLGAE-----LPIEDVPLLQED-IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 340 DLg~e-----ig~~~v~~~qk~-Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
-=+.. .+. .++..|-. |.+.+....+|+|. ....-+ -.|++.|+..|+|++|+.
T Consensus 168 ~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIa---------dGGIr~---~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 168 PGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIA---------DGGIRT---HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEE---------ECCcCc---HHHHHHHHHcCCCEEeec
Confidence 21211 111 11122223 33333344788774 333332 468999999999999995
No 75
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.83 E-value=15 Score=35.50 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=72.3
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceE-EEeecCcchhhhHHHHHH-hCCEEEEcCCCcccCCCCCC
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHV-IVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIED 349 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~I-iaKIEt~~gv~NldeIl~-~sDgImIgrGDLg~eig~~~ 349 (570)
.++.+.+.|+|++.+..-...+...++.+++++.|..+.+ +..-.|++-+ .+++. -+|.+.+.++--+...+.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~---~~~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKR---AKLLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHH---HHHHHCCCCEEEEcCcccccccCCCC
Confidence 3466778999999988655555566666777665543222 1344444332 23555 48998887642222222222
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 420 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~ 420 (570)
.....+++.+ ....|+.+. -...| ..+..+...|+|++.+.+--..-..|.++++
T Consensus 146 ~~~~i~~~~~---~~~~~i~~~--------GGI~~-----~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 146 PEDDLKKVKK---LLGVKVAVA--------GGITP-----DTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CHHHHHHHHh---hcCCCEEEE--------CCcCH-----HHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2222222222 256777753 12222 3577888999999998754333345666654
No 76
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.82 E-value=13 Score=39.81 Aligned_cols=126 Identities=20% Similarity=0.309 Sum_probs=74.1
Q ss_pred ChhhHHHhhhhhhcCC--cEEEecCC-CChhHHHHHHHHHHhcCCCceEEEe-ecCcchhhhHHHHHHhCCEEEEcCCCc
Q 008319 266 TDKDWEDIKFGVDNQV--DFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARGDL 341 (570)
Q Consensus 266 t~kD~~dI~~~~~~gv--d~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDgImIgrGDL 341 (570)
++++.+.+..-++.|+ |+|++--. -..+.+.++-+.+.+.-.++.||++ |-|.+...++.+. =+|++.+|=|.=
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a--Gad~i~vg~~~G 172 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA--GADATKVGIGPG 172 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc--CcCEEEECCCCC
Confidence 5567677777778855 99988311 1122333333445554556889996 9888877666542 289999872221
Q ss_pred cc--C---CCCCCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 342 GA--E---LPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 342 g~--e---ig~~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+. + .+. ..+.+|-..+..|.+ ..+|+|- ....-+ -.|++.++..|+|++|+.
T Consensus 173 ~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIA---------dGGI~~---~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 173 KVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIA---------DGGIRT---HGDIAKSIRFGATMVMIG 230 (326)
T ss_pred cccccccccCC-CCCccHHHHHHHHHHHcCCCEEE---------eCCCCC---HHHHHHHHHhCCCEEEec
Confidence 11 1 111 123333323333333 4788774 344433 357889999999999986
No 77
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=87.45 E-value=2 Score=47.05 Aligned_cols=124 Identities=22% Similarity=0.299 Sum_probs=82.7
Q ss_pred hhhHHHhhhhhhcCCcEEEecCC--CChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcCCCccc
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLGA 343 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV--~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgrGDLg~ 343 (570)
+.|+..+..-++.|+|+|.+--- +|--.+ +.-+|+++.-.+..||+ .+=|.+=.+|| |.+-+||+=||=|-=++
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqGnS~~qi-emik~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGSi 326 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQGNSIYQL-EMIKYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGSI 326 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCCcchhHH-HHHHHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCce
Confidence 67788888888999999987522 233233 34578888888888888 55555444443 33449999998554433
Q ss_pred CCCC-------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 ELPI-------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 eig~-------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
-+-- +.- .+--++.+.|+..|.|||- .... ..+-+++.|+..|++.+|+-
T Consensus 327 CiTqevma~GrpQ~-TAVy~va~~A~q~gvpviA---------DGGi---q~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 327 CITQKVMACGRPQG-TAVYKVAEFANQFGVPCIA---------DGGI---QNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred eeeceeeeccCCcc-cchhhHHHHHHhcCCceee---------cCCc---CccchhHhhhhcCchhheec
Confidence 3221 111 2223678889999999983 3332 23667899999999999964
No 78
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=87.31 E-value=18 Score=35.11 Aligned_cols=135 Identities=12% Similarity=0.089 Sum_probs=76.8
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCC-C-C
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I-E 348 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig-~-~ 348 (570)
+.++.+.+.|+|+|.+.--.. ++.....+.++..+.+..+. ++.....+.+.++...+|++.+.+-+-|..=. + +
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 335666789999988764332 33444445566666554443 45445577888888778998886433322111 1 1
Q ss_pred CHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHH
Q 008319 349 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~ 421 (570)
......+++-+..++. ++|+.++ -.-.| ..+..++..|+|++.+.+.-..-.-|.++++.
T Consensus 147 ~~~~~i~~i~~~~~~~~~~~~i~v~--------GGI~~-----env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 147 DTLEKIREVRKMIDENGLSILIEVD--------GGVND-----DNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEE--------CCcCH-----HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 1112223333334333 3577653 22222 34777789999999987655434457666654
No 79
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.23 E-value=39 Score=34.89 Aligned_cols=157 Identities=10% Similarity=0.127 Sum_probs=99.5
Q ss_pred ccccCCCccCCCCCChhhHHHhhhhh-hcCCcEEEecCCCChhH----------HHHHHHHHHhcCCCceEEEeecCcch
Q 008319 252 HLNVRGKSANLPSITDKDWEDIKFGV-DNQVDFYAVSFVKDAKV----------VHELKDYLKSCNADIHVIVKIESADS 320 (570)
Q Consensus 252 gIn~p~~~~~lp~lt~kD~~dI~~~~-~~gvd~I~~SfV~sa~d----------v~~vr~~l~~~~~~i~IiaKIEt~~g 320 (570)
|-..||.. +|..++..|...+ +.|+|+|=+.|....+. ...++........+.++.+..-....
T Consensus 9 G~q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (266)
T cd07944 9 GGYVNNWD-----FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND 83 (266)
T ss_pred CccccCcc-----CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC
Confidence 33455554 4677887776554 58999998887654321 34455544433236778887766542
Q ss_pred hhhHHHHHHh----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-H
Q 008319 321 IPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-A 395 (570)
Q Consensus 321 v~NldeIl~~----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-a 395 (570)
++++|... .|.|-++ .+... ....+++++.++++|..|.+. +. ....-+..++.+.+. +
T Consensus 84 --~~~~l~~a~~~gv~~iri~-------~~~~~-~~~~~~~i~~ak~~G~~v~~~--~~----~a~~~~~~~~~~~~~~~ 147 (266)
T cd07944 84 --DIDLLEPASGSVVDMIRVA-------FHKHE-FDEALPLIKAIKEKGYEVFFN--LM----AISGYSDEELLELLELV 147 (266)
T ss_pred --CHHHHHHHhcCCcCEEEEe-------ccccc-HHHHHHHHHHHHHCCCeEEEE--EE----eecCCCHHHHHHHHHHH
Confidence 34444433 5676664 23333 344577899999999887753 22 222344556666654 4
Q ss_pred HHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 396 VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 396 v~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
...|+|.+.|. +|.=.-+|.+.-+.+..+.....
T Consensus 148 ~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 148 NEIKPDVFYIV-DSFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred HhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhcC
Confidence 55799999995 88888899999888888876554
No 80
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=87.01 E-value=13 Score=37.47 Aligned_cols=139 Identities=11% Similarity=0.113 Sum_probs=83.4
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHH--HhCCEEEEcCCCcccCCCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII--SASDGAMVARGDLGAELPIE 348 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl--~~sDgImIgrGDLg~eig~~ 348 (570)
..++...+.|+|+|.+-+--....+.+.-+.+++.|..+.+-.. +...++.+.+++ ...|.|++ ++++-|..
T Consensus 79 ~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l~~~~vD~Vl~----m~v~pG~~ 152 (228)
T PTZ00170 79 KWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLIDTDLVDMVLV----MTVEPGFG 152 (228)
T ss_pred HHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHHccchhhhHHh----hhcccCCC
Confidence 34455668899998775443322266666777777765554444 445789999998 67898876 77776664
Q ss_pred CH---HHHHHHHHHHHHHcC-CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHH
Q 008319 349 DV---PLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (570)
Q Consensus 349 ~v---~~~qk~Ii~~c~~~g-KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (570)
.. +..-.++-+.....+ ..+.++ -.-.+ ..+..++..|+|.+++.+--.....|.++++.+.+
T Consensus 153 gq~~~~~~~~ki~~~~~~~~~~~I~Vd--------GGI~~-----~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 153 GQSFMHDMMPKVRELRKRYPHLNIQVD--------GGINL-----ETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred CcEecHHHHHHHHHHHHhcccCeEEEC--------CCCCH-----HHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 22 222233322222222 222221 11122 24567788999999886443334579999998887
Q ss_pred HHHH
Q 008319 425 VALR 428 (570)
Q Consensus 425 I~~~ 428 (570)
.+.+
T Consensus 220 ~~~~ 223 (228)
T PTZ00170 220 SVQK 223 (228)
T ss_pred HHHH
Confidence 7654
No 81
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.00 E-value=20 Score=33.86 Aligned_cols=119 Identities=20% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCC-CceEEEeecCcc-------hhhhHHHHHHh-CCEEEEcCCCc
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESAD-------SIPNLHSIISA-SDGAMVARGDL 341 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IiaKIEt~~-------gv~NldeIl~~-sDgImIgrGDL 341 (570)
+.+++.++.|+|+|.+.. +-+..+++.. +. ++.+++++=... .++..++-.+. +|++++.+. .
T Consensus 17 ~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~-~ 88 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN-I 88 (201)
T ss_pred HHHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc-H
Confidence 445677889999998884 4444444433 44 788999986544 56666666665 899998531 1
Q ss_pred ccCCC--CCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCc--ChHHHhHHHH-HHHhCccEEEec
Q 008319 342 GAELP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP--TRAEVSDIAI-AVREGADAVMLS 406 (570)
Q Consensus 342 g~eig--~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~P--trAEv~Dv~n-av~~G~D~vmLs 406 (570)
..... .+.+...-+++.+.| +.+.|+++- ..|.. +..++...++ +...|+|++=.+
T Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy--------~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 89 GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVI--------LETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEE--------EECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 11111 133334444555555 469998863 22221 2233444333 245799988654
No 82
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=86.61 E-value=37 Score=35.18 Aligned_cols=147 Identities=17% Similarity=0.217 Sum_probs=75.7
Q ss_pred hhhHHH-hhhhhhcCCcEEEecC------------CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh---
Q 008319 267 DKDWED-IKFGVDNQVDFYAVSF------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--- 330 (570)
Q Consensus 267 ~kD~~d-I~~~~~~gvd~I~~Sf------------V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--- 330 (570)
.+|..+ .+.+.+.|+|+|-+.| -.+++.+.++-+.+.+. .+++|++|| ++ .++++.+|++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~ 177 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHH
Confidence 345433 3455577899986643 34444444443444332 268899998 33 23345555543
Q ss_pred --CCEEEE-----cCC-Cccc-------C----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhH
Q 008319 331 --SDGAMV-----ARG-DLGA-------E----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 391 (570)
Q Consensus 331 --sDgImI-----grG-DLg~-------e----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~D 391 (570)
+|+|.+ ++. |+-. . -|....+...+.+-+..+..+.|+|.. ...-+ ..|
T Consensus 178 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~---------GGI~~---~~d 245 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGV---------GGIAS---GED 245 (296)
T ss_pred cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEE---------CCCCC---HHH
Confidence 688765 211 2210 0 011112223333333344458998864 23322 346
Q ss_pred HHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 392 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 392 v~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
+..++..|+|+|++..---. -|--.-++.+.+.+..|
T Consensus 246 a~~~l~~GAd~V~igra~l~--~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 246 ALEFLMAGASAVQVGTANFV--DPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHcCCCEEEEchhhhc--ChHHHHHHHHHHHHHHH
Confidence 77889999999999643222 46444344444433333
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.24 E-value=13 Score=41.77 Aligned_cols=123 Identities=23% Similarity=0.228 Sum_probs=75.2
Q ss_pred hhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCce-EEEeecCcchhhhHHHHHHhCCEEEEcCCCccc-
Q 008319 268 KDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIH-VIVKIESADSIPNLHSIISASDGAMVARGDLGA- 343 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~-IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~- 343 (570)
.+.+.++..++.|+|.+.+- .-++ ..+...-+.+.....++. ++.-|-|.+...++.+. =+|+|-+|=|--+.
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~ 304 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSIC 304 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCccc
Confidence 34666667778999987653 2222 334444455555444555 55678887776666542 38998776332221
Q ss_pred ------CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 ------ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 ------eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..|.+. ..+..++.+.|++.++|+|. .....+ -.|++.|+..|+|++|+-
T Consensus 305 ~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~via---------dGGi~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIA---------DGGIRY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcCH-HHHHHHHHHHhccCCCeEEE---------cCCCCC---HHHHHHHHHhCCCEEEEC
Confidence 122222 23444566777778999884 344433 357999999999999984
No 84
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=86.03 E-value=0.86 Score=50.92 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=83.9
Q ss_pred cCCcEEEecCCCChhHHHHHHHHHHh----------------c-----CCCceEEEeecCcchhhhHHHHHHh----C--
Q 008319 279 NQVDFYAVSFVKDAKVVHELKDYLKS----------------C-----NADIHVIVKIESADSIPNLHSIISA----S-- 331 (570)
Q Consensus 279 ~gvd~I~~SfV~sa~dv~~vr~~l~~----------------~-----~~~i~IiaKIEt~~gv~NldeIl~~----s-- 331 (570)
..+..|.+||+.|++++..+.+++.. - -+.+.||.-||...++-|+++|+.. .
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 46678999999999999887655421 1 1458999999999999999999986 2
Q ss_pred C----EEEEcCCCcccCCCCC----CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHh--HHHHHH--HhC
Q 008319 332 D----GAMVARGDLGAELPIE----DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS--DIAIAV--REG 399 (570)
Q Consensus 332 D----gImIgrGDLg~eig~~----~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~--Dv~nav--~~G 399 (570)
| -+|+||.|=++..|+- -+..+..++-+...+.|.|+.-.= -....|=|--++ .+.+.+ .-|
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIi------G~GS~PFRG~l~p~~~~~~~~EY~g 272 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPII------GVGSPPFRGGLSPPNVERVLEEYPG 272 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEE------E-BSSGGGT---TTGHHHHHHHTTT
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeee------ccCCCCcCCCCChHhHHHHHHhcCC
Confidence 2 7999999999999873 223344566666788899974310 122233332210 011222 224
Q ss_pred ccEEEeccccc-CCCCHHHHHHHHHHHHHHhh
Q 008319 400 ADAVMLSGETA-HGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 400 ~D~vmLs~ETA-~G~yP~eaV~~m~~I~~~aE 430 (570)
+..+-+. +| .=.||.+-|+---+.+.+..
T Consensus 273 v~T~TIQ--SAfrYD~p~~~v~~ai~~l~~~~ 302 (491)
T PF14010_consen 273 VYTFTIQ--SAFRYDYPYEEVIKAIEKLNEAP 302 (491)
T ss_dssp -SEEEE---HHHHHTTHHHHHHHHHHHHHHGG
T ss_pred eeEEEee--ehhhcCCCHHHHHHHHHHHHhcc
Confidence 4443332 22 34678777766666565544
No 85
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=85.77 E-value=18 Score=37.83 Aligned_cols=127 Identities=20% Similarity=0.302 Sum_probs=71.3
Q ss_pred hhhHHHh-hhhhhcCCcEEEecCC---------------CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh
Q 008319 267 DKDWEDI-KFGVDNQVDFYAVSFV---------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (570)
Q Consensus 267 ~kD~~dI-~~~~~~gvd~I~~SfV---------------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 330 (570)
..|+.+. +.+.+.|+|+|-+.+- ++++.+.++-+.+.+ ..++++++||- + .+.++.++++.
T Consensus 112 ~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~Pv~vKl~-~-~~~~~~~~a~~ 188 (299)
T cd02940 112 KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE-AVKIPVIAKLT-P-NITDIREIARA 188 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH-hcCCCeEEECC-C-CchhHHHHHHH
Confidence 3455444 3344468888765321 233444444444433 23689999994 3 44567777663
Q ss_pred -----CCEEEEc-----CCCcc---------c----CC----CCCCHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcC
Q 008319 331 -----SDGAMVA-----RGDLG---------A----EL----PIEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDH 381 (570)
Q Consensus 331 -----sDgImIg-----rGDLg---------~----ei----g~~~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~ 381 (570)
+|||.+. |-++- + .. |....+...+.+-+..+.. ..|+|-. .
T Consensus 189 ~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~---------G 259 (299)
T cd02940 189 AKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGI---------G 259 (299)
T ss_pred HHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEE---------C
Confidence 7888741 11110 0 00 1123445566666666666 6787753 3
Q ss_pred CCcChHHHhHHHHHHHhCccEEEeccc
Q 008319 382 PTPTRAEVSDIAIAVREGADAVMLSGE 408 (570)
Q Consensus 382 ~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (570)
..-+ ..|+..++..|+|+||+...
T Consensus 260 GI~~---~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 260 GIES---WEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred CCCC---HHHHHHHHHcCCChheEcee
Confidence 3322 45788999999999999633
No 86
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=85.68 E-value=36 Score=33.99 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
.-+...|+..|.|+++. .|....-......-..|++.+...+. | -++.+...+++.+-...++
T Consensus 63 ~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~~~~ 125 (244)
T cd00640 63 IALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPGAYY 125 (244)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCCCEe
Confidence 35667899999999874 23233344566677789998777533 3 4667776666654222222
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcC---C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeC
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN---T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTN 496 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~ 496 (570)
..++ .+ ....+.....+.++.++++ . .|++.+-+|.++.-++ ...|...|+++.+
T Consensus 126 ~~~~-~n------~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 126 VNQF-DN------PANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred cCCC-CC------HHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 2111 11 0112222334456666665 3 7899999998887555 4568899999876
No 87
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=85.57 E-value=4.3 Score=40.84 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=94.9
Q ss_pred CCCChh-hH-HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcc-----h-----hhhHHHHHHh
Q 008319 263 PSITDK-DW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD-----S-----IPNLHSIISA 330 (570)
Q Consensus 263 p~lt~k-D~-~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~-----g-----v~NldeIl~~ 330 (570)
|..+.. |. +.++.+++.+++.|.++ +..+...++.+...+..+.++.....-. . +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 344444 53 56678889999999887 5566667776655445677777775422 2 4555666655
Q ss_pred -CCEEEEc--CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH---------HhHHH-HHHH
Q 008319 331 -SDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---------VSDIA-IAVR 397 (570)
Q Consensus 331 -sDgImIg--rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE---------v~Dv~-nav~ 397 (570)
+|+|-+- .|-++-+- ...+..-.+++++.|+..|.|+|+ . +.|+..+ +...+ -+..
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHHHHHHHHHHHH
Confidence 7755442 11111111 235666667999999999999996 3 4455555 33333 3477
Q ss_pred hCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
.|+|.+=.+-=.. ...-.+.++.|.+++..+.
T Consensus 158 ~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 158 LGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp TT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred hCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 8999987754333 5566788999999988665
No 88
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=85.21 E-value=6.3 Score=38.88 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=73.8
Q ss_pred hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhh----HHHHHHh-----CCEEEEcCCCcccC
Q 008319 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPN----LHSIISA-----SDGAMVARGDLGAE 344 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~N----ldeIl~~-----sDgImIgrGDLg~e 344 (570)
+.+.+.|+|+|.+.+--..+.+..+.+++++.|..+.+....++..+++. ++.++.. .||..+.+..
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~---- 149 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPATR---- 149 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCCc----
Confidence 44567899999888764445576777777777777666666777666664 3333322 3444433211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-EEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHH
Q 008319 345 LPIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (570)
Q Consensus 345 ig~~~v~~~qk~Ii~~c~~~gKP-vivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (570)
++++ +++-+ ..+.+ .++. . .-.+ +-..+..++..|+|.+++..--....-|.++++.|+
T Consensus 150 --~~~i----~~l~~---~~~~~~~ivd-g-------GI~~---~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 150 --PERV----RYIRS---RLGDELKIIS-P-------GIGA---QGGKAADAIKAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred --chhH----HHHHH---hcCCCcEEEe-C-------CcCC---CCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 1222 12211 22223 2221 1 1111 111256778889999988643333456999999998
Q ss_pred HHHHH
Q 008319 424 TVALR 428 (570)
Q Consensus 424 ~I~~~ 428 (570)
+.+++
T Consensus 210 ~~~~~ 214 (215)
T PRK13813 210 EEIRG 214 (215)
T ss_pred HHHhc
Confidence 87654
No 89
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=84.76 E-value=2 Score=50.54 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=84.4
Q ss_pred eccCcccccCCCccCCCCCChhhHHHhhhhh----hcCCcE---EEecCCCChhHHHHHHHHHHhcCCC------ceEEE
Q 008319 247 LKSRRHLNVRGKSANLPSITDKDWEDIKFGV----DNQVDF---YAVSFVKDAKVVHELKDYLKSCNAD------IHVIV 313 (570)
Q Consensus 247 l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~----~~gvd~---I~~SfV~sa~dv~~vr~~l~~~~~~------i~Iia 313 (570)
|.+++..--|+.. ....|.+..+-.+-+. +.|.|. ..+|+.+++.|+-++.=++++.|-- +.|+.
T Consensus 447 L~s~RPL~p~~~~--~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvP 524 (910)
T COG2352 447 LSSRRPLLPPFWQ--PSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVP 524 (910)
T ss_pred hcCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccccc
Confidence 3444444333322 2344444444443332 345554 4789999999999998889888754 88999
Q ss_pred eecCcchhhhHHHHHHh---CC-------------EEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEE
Q 008319 314 KIESADSIPNLHSIISA---SD-------------GAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVI 369 (570)
Q Consensus 314 KIEt~~gv~NldeIl~~---sD-------------gImIgrGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPvi 369 (570)
--||.+-++|.++|+.. .| -||+|-.|=.-+=|+ -.+..+|+.+++.|+++|+-.=
T Consensus 525 LFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 525 LFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred ccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 99999999999999875 11 577776665544454 2588899999999999988654
No 90
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=84.62 E-value=26 Score=34.10 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=67.5
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 348 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~ 348 (570)
+-++.+++.|++.|-+.+ ++......++.+-+..+ +..|-+ -|=| -+++++.+.. +|+++.+-.|
T Consensus 20 ~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~---~~~~~~a~~~Ga~~i~~p~~~-------- 86 (190)
T cd00452 20 ALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLT---PEQADAAIAAGAQFIVSPGLD-------- 86 (190)
T ss_pred HHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCC---HHHHHHHHHcCCCEEEcCCCC--------
Confidence 444566789999999985 56666666665544433 343333 2222 3466776666 8999754222
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
..++..|+..|.|++.- .. | .+++..|...|+|.+.+..
T Consensus 87 ------~~~~~~~~~~~~~~i~g---------v~--t---~~e~~~A~~~Gad~i~~~p 125 (190)
T cd00452 87 ------PEVVKAANRAGIPLLPG---------VA--T---PTEIMQALELGADIVKLFP 125 (190)
T ss_pred ------HHHHHHHHHcCCcEECC---------cC--C---HHHHHHHHHCCCCEEEEcC
Confidence 46888999999997741 11 3 3456788899999999853
No 91
>PLN02334 ribulose-phosphate 3-epimerase
Probab=83.92 E-value=35 Score=34.17 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=78.1
Q ss_pred hhhhhhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--CCEEEEcCCCcccCCCCCC
Q 008319 273 IKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDgImIgrGDLg~eig~~~ 349 (570)
+..+.+.|+|+|.+-.-+ ..+.....-+.+...|..+.+...=. .-++.+.++++. +|.|.+++-.=+..- +.
T Consensus 81 ~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~--t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~--~~ 156 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPG--TPVEAVEPVVEKGLVDMVLVMSVEPGFGG--QS 156 (229)
T ss_pred HHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCC--CCHHHHHHHHhccCCCEEEEEEEecCCCc--cc
Confidence 445578899998666542 12233233333444454444443212 345677888888 999988643322111 22
Q ss_pred H-HHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHH
Q 008319 350 V-PLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 350 v-~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (570)
. +...+++ +..++. ++|+.+. -.-. ...+......|+|++.+.+.-.--..|.++++.+.+.+
T Consensus 157 ~~~~~~~~i-~~~~~~~~~~~I~a~--------GGI~-----~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~ 222 (229)
T PLN02334 157 FIPSMMDKV-RALRKKYPELDIEVD--------GGVG-----PSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASV 222 (229)
T ss_pred cCHHHHHHH-HHHHHhCCCCcEEEe--------CCCC-----HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 2 2222233 333333 4676542 1222 22466778999999998765444457999999988876
Q ss_pred HHh
Q 008319 427 LRT 429 (570)
Q Consensus 427 ~~a 429 (570)
.++
T Consensus 223 ~~~ 225 (229)
T PLN02334 223 EKA 225 (229)
T ss_pred HHh
Confidence 655
No 92
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=83.89 E-value=31 Score=35.02 Aligned_cols=144 Identities=17% Similarity=0.273 Sum_probs=76.6
Q ss_pred CCCCCChhhHHHhhhhhhcCCcEE--EecC---CCChhHHHHHH--------------HHHHhcC--CCceEEEeec-Cc
Q 008319 261 NLPSITDKDWEDIKFGVDNQVDFY--AVSF---VKDAKVVHELK--------------DYLKSCN--ADIHVIVKIE-SA 318 (570)
Q Consensus 261 ~lp~lt~kD~~dI~~~~~~gvd~I--~~Sf---V~sa~dv~~vr--------------~~l~~~~--~~i~IiaKIE-t~ 318 (570)
..|.+ +.-.+.++...+.|+|++ .+|| +-+...+.+.- +.+++.. .+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 34554 334455666667899986 5566 55555555321 1222221 2456666665 43
Q ss_pred ---chhhhH-HHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHH
Q 008319 319 ---DSIPNL-HSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 393 (570)
Q Consensus 319 ---~gv~Nl-deIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~ 393 (570)
.|++++ ++..+. +||+.+. || ++ .-.++++..|+++|...+++ -+|..+...+..
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~----ee~~~~~~~~~~~g~~~i~~--------i~P~T~~~~i~~-- 147 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PP----EEAEEFREAAKEYGLDLIFL--------VAPTTPDERIKK-- 147 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CH----HHHHHHHHHHHHcCCcEEEE--------eCCCCCHHHHHH--
Confidence 244554 333334 8999995 55 32 24678999999999977763 334333222333
Q ss_pred HHHHhCccEEEe---cccccCCC-CHHHHHHHHHHHH
Q 008319 394 IAVREGADAVML---SGETAHGK-FPLKAVKVMHTVA 426 (570)
Q Consensus 394 nav~~G~D~vmL---s~ETA~G~-yP~eaV~~m~~I~ 426 (570)
......|.+.+ .+-|.... ++....+.++++.
T Consensus 148 -i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr 183 (242)
T cd04724 148 -IAELASGFIYYVSRTGVTGARTELPDDLKELIKRIR 183 (242)
T ss_pred -HHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHH
Confidence 33335555554 23333222 4555555555554
No 93
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=83.75 E-value=10 Score=42.60 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=80.1
Q ss_pred CCChhhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEe-ecCcchhhhHHHHHHhCCEEEEcCC-
Q 008319 264 SITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARG- 339 (570)
Q Consensus 264 ~lt~kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl~~sDgImIgrG- 339 (570)
.+.+.+.+.++.-++.|+|.|++- .-++ +.+.++-+.++....++.||+= +-|.++..++.+. =+|+|-||=|
T Consensus 221 ~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~--G~d~i~vg~g~ 297 (475)
T TIGR01303 221 GINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA--GANIIKVGVGP 297 (475)
T ss_pred eeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh--CCCEEEECCcC
Confidence 345556677777778999998764 3233 3444444556655567888885 7777776666541 2888875522
Q ss_pred -Cccc-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 340 -DLGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 340 -DLg~-----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
=-.. ..|.+. ....-+..+.+++.|+|+|- .....+ -.|++.|+..|+|++|+.+
T Consensus 298 Gs~~ttr~~~~~g~~~-~~a~~~~~~~~~~~~~~via---------dGgi~~---~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQ-FSAVLECAAEARKLGGHVWA---------DGGVRH---PRDVALALAAGASNVMVGS 358 (475)
T ss_pred CccccCccccCCCCch-HHHHHHHHHHHHHcCCcEEE---------eCCCCC---HHHHHHHHHcCCCEEeech
Confidence 2111 112222 22333566667888999883 444444 3689999999999999964
No 94
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=83.63 E-value=29 Score=36.03 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=77.0
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCC-CC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-ED 349 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~-~~ 349 (570)
+-++.+.+.|+|+|.++-.. .++..++.+.+++.|-+.-.+..=.| -.+.+..|++.++|.+--=.-.|+ .|. ..
T Consensus 110 ~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~Gv-TG~~~~ 185 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGV-TGLKTE 185 (263)
T ss_pred HHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCC-CCCCcc
Confidence 34566778999999999764 46777888888877766444443334 467999999999954432011221 121 35
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
++.-.+++++..++. ++|+.+- -..-+. .++..+...|+|+++.-
T Consensus 186 ~~~~~~~~i~~ir~~t~~Pi~vG---------FGI~~~---e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 186 LDKKLKKLIETIKKMTNKPIILG---------FGISTS---EQIKQIKGWNINGIVIG 231 (263)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEE---------CCcCCH---HHHHHHHhcCCCEEEEC
Confidence 555566777777654 8888762 222222 34666788899999874
No 95
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=83.58 E-value=27 Score=34.44 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=72.0
Q ss_pred HhhhhhhcCCcEEEecCC-CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCC
Q 008319 272 DIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~ 349 (570)
.++.+.+.|+|+|.+.-. ...+++.++.+.....| +.+++-+- +.+.+.++.+. .|.+.+..-|.... + .+
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~---~~~e~~~~~~~g~~~i~~t~~~~~~~-~-~~ 158 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVH---DEEELERALALGAKIIGINNRDLKTF-E-VD 158 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEEC---CHHHHHHHHHcCCCEEEEeCCCcccc-C-cC
Confidence 577778999999975422 12234444433333333 33344443 44445555555 88898886665432 2 22
Q ss_pred HHHHHHHHHHHHHH--cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHH
Q 008319 350 VPLLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (570)
Q Consensus 350 v~~~qk~Ii~~c~~--~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~ 421 (570)
+ +.+.+.++. .++|++.. ...-+. .|+..+...|+|++++.+.-.....|.++++.
T Consensus 159 ~----~~~~~l~~~~~~~~pvia~---------gGI~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 159 L----NTTERLAPLIPKDVILVSE---------SGISTP---EDVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred H----HHHHHHHHhCCCCCEEEEE---------cCCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHh
Confidence 2 222233333 46788743 333333 45667778899999997765566678777653
No 96
>PRK08227 autoinducer 2 aldolase; Validated
Probab=83.47 E-value=7.9 Score=40.25 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=81.3
Q ss_pred HhhhhhhcCCcEEEec-CCCChhHHHHHH---HHHHhcC-CCceEEEeecCcchhhhHHHHHHh---------CCEEEEc
Q 008319 272 DIKFGVDNQVDFYAVS-FVKDAKVVHELK---DYLKSCN-ADIHVIVKIESADSIPNLHSIISA---------SDGAMVA 337 (570)
Q Consensus 272 dI~~~~~~gvd~I~~S-fV~sa~dv~~vr---~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~---------sDgImIg 337 (570)
+++.|+..|+|.|.+. |+-+..+-+.++ +...++. ..+++++....-..+.|=.++++. +|.|=+
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~- 177 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKT- 177 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEec-
Confidence 3566889999988775 444444333333 3333333 246677633222234443334433 233332
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCC-cChHHHhHHHHHHHhCccEEEecccccCCCCHH
Q 008319 338 RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAVMLSGETAHGKFPL 416 (570)
Q Consensus 338 rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~-PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~ 416 (570)
++.. ...+++++.| ..||++| -.|. +++.-...++.++..|+-++..----..=..|.
T Consensus 178 --------~y~~--~~f~~vv~a~---~vPVvia--------GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~ 236 (264)
T PRK08227 178 --------YYVE--EGFERITAGC---PVPIVIA--------GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPV 236 (264)
T ss_pred --------CCCH--HHHHHHHHcC---CCcEEEe--------CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHH
Confidence 2222 4566666655 5799987 3333 333337889999999999998766666667899
Q ss_pred HHHHHHHHHHHH
Q 008319 417 KAVKVMHTVALR 428 (570)
Q Consensus 417 eaV~~m~~I~~~ 428 (570)
..++.++.|+.+
T Consensus 237 ~~~~al~~IVh~ 248 (264)
T PRK08227 237 AMIKAVHAVVHE 248 (264)
T ss_pred HHHHHHHHHHhC
Confidence 999999888753
No 97
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=83.46 E-value=2.2 Score=50.73 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=68.0
Q ss_pred CcEEEecCCCChhHHHHHHHHHHhcCC--------CceEEEeecCcchhhhHHHHHHh-C---------------CEEEE
Q 008319 281 VDFYAVSFVKDAKVVHELKDYLKSCNA--------DIHVIVKIESADSIPNLHSIISA-S---------------DGAMV 336 (570)
Q Consensus 281 vd~I~~SfV~sa~dv~~vr~~l~~~~~--------~i~IiaKIEt~~gv~NldeIl~~-s---------------DgImI 336 (570)
+.-+.+|+.+++.|+.++--+.+++|- .+.|++-.||.+.++|..+|++. . --||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 334689999999999998777766653 47899999999999999999986 1 17999
Q ss_pred cCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 337 ARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 337 grGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
|-.|=+-+-|+ -.+..+|+++.+.|+++|..+.+.
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 98776666665 368899999999999999998763
No 98
>PRK15452 putative protease; Provisional
Probab=83.36 E-value=4.5 Score=45.00 Aligned_cols=91 Identities=10% Similarity=0.139 Sum_probs=56.8
Q ss_pred hhHHHhhhhhhcCCcEEEecC---CC-------ChhHHHHHHHHHHhcCCCceEEEe-ecCcchhhhHHHHH----Hh-C
Q 008319 268 KDWEDIKFGVDNQVDFYAVSF---VK-------DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSII----SA-S 331 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~Sf---V~-------sa~dv~~vr~~l~~~~~~i~IiaK-IEt~~gv~NldeIl----~~-s 331 (570)
.+.+.++.|+++|+|.|-+.+ -- +.+++.+.-++..+.|.++.+..- |=..+-++.+.+.+ +. .
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 577889999999999998832 11 337777777777777766544321 22223344444434 33 7
Q ss_pred CEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc--CCCEEEEccc
Q 008319 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--QKPVIVATNM 374 (570)
Q Consensus 332 DgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~--gKPvivaTqm 374 (570)
|||+|+ |+|+ +..+++. +.|+...||+
T Consensus 91 DgvIV~--d~G~--------------l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 91 DALIMS--DPGL--------------IMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred CEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecc
Confidence 999995 5542 2333343 7789888886
No 99
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.24 E-value=27 Score=32.45 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=66.8
Q ss_pred hhhhhhcCCcEEEecCCCC------hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCC
Q 008319 273 IKFGVDNQVDFYAVSFVKD------AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAEL 345 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~s------a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~ei 345 (570)
.+++.+.|+|+|-+....- .+.+.++++.+ .+..++.++.......... ..+. +|.+.+.++.-+...
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 3577788999998886542 22233333332 3678899987655433211 2222 799999877654332
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 346 PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 346 g~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.... +.....+....+..++|++.+.- .-+ -.++..++..|+|++++.
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~pi~~~GG---------i~~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RDAV-PIADLLLILAKRGSKVPVIAGGG---------IND---PEDAAEALALGADGVIVG 199 (200)
T ss_pred ccCc-hhHHHHHHHHHhcCCCCEEEECC---------CCC---HHHHHHHHHhCCCEEEec
Confidence 2211 11122233334567899987532 222 135667777899999975
No 100
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=83.12 E-value=21 Score=41.14 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=101.6
Q ss_pred hhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccC-
Q 008319 268 KDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAE- 344 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~e- 344 (570)
.-.+.|....+.|+|.|-+. -.+.|+.+..+++.+...|.+++++|-|-----+ . .+-++.+|.|=|-||.++-.
T Consensus 42 atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~-A-~~a~~~v~kiRINPGN~~~~~ 119 (611)
T PRK02048 42 ACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKV-A-DVAAQYAEKVRINPGNYVDPG 119 (611)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHH-H-HHHHHhhCCEEECCCcCCCcc
Confidence 33455666678999997555 4455555566677777788999999988432211 1 22333499999999999863
Q ss_pred --C------------CCCCHHHHHHHHHHHHHHcCCCEEEEcc-------chhhhhcCCCcC-hHH--HhHHHHHHHhCc
Q 008319 345 --L------------PIEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMIDHPTPT-RAE--VSDIAIAVREGA 400 (570)
Q Consensus 345 --i------------g~~~v~~~qk~Ii~~c~~~gKPvivaTq-------mLeSM~~~~~Pt-rAE--v~Dv~nav~~G~ 400 (570)
. .++++..--+.++++|+++|+|+=+-++ +|+..- .+|. ..| +.-+--+-..|+
T Consensus 120 k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg--~tpe~mVeSAle~~~i~e~~~f 197 (611)
T PRK02048 120 RTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYG--DTPEGMVESCMEFLRICVEEHF 197 (611)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC--CChHHHHHHHHHHHHHHHHCCC
Confidence 1 1234556667899999999999866654 233211 1221 001 233445567899
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 401 DAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
+=+.+|--.+.-..++.+.+.+..-+.+
T Consensus 198 ~diviS~KsS~~~~~V~AyRlLa~~l~~ 225 (611)
T PRK02048 198 TDVVISIKASNTVVMVRTVRLLVAVMEA 225 (611)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 9999998777777777777766665543
No 101
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=83.02 E-value=19 Score=39.50 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=81.5
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHhCCEEEEcC-CCcccCCCCCCH
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVAR-GDLGAELPIEDV 350 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~sDgImIgr-GDLg~eig~~~v 350 (570)
++.+.+.|+|++.+...-..+.+.+..+.+++.|. .+.. .+.....++.++++....|.+.+.+ -|=+ +.+..
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gi--kvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~---~~~~~ 317 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGI--YSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEE---GTEHA 317 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCC--EEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCC---cccch
Confidence 44566899999999876665567777777877764 4444 4444446677788766689888875 2222 11111
Q ss_pred HHHHHHHHHHHHH--cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHH
Q 008319 351 PLLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 351 ~~~qk~Ii~~c~~--~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~ 426 (570)
. + -++..++ .+.++.++- .-. ...+..++..|+|.+.+.+--..-+.|.++++.+.+.+
T Consensus 318 --~-~-kI~~ikk~~~~~~I~VdG--------GI~-----~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 318 --W-G-NIKEIKKAGGKILVAVAG--------GVR-----VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred --H-H-HHHHHHHhCCCCcEEEEC--------CcC-----HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 1 1 2223333 244566541 111 23466788999999887644323457999999888765
No 102
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=82.72 E-value=49 Score=33.69 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=83.5
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCC--CceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCC-
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE- 348 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~--~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~- 348 (570)
.|..-.+.|+|.|.+- +++..++.+.-+++++.|. ...+.-+=+| -++.++.++..+|.|+| ++++=|+.
T Consensus 83 ~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~PGfgG 155 (228)
T PRK08091 83 VAKACVAAGADIVTLQ-VEQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDPRTGT 155 (228)
T ss_pred HHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECCCCCC
Confidence 4444457899998766 4655667666678888888 6667777777 57899999999999998 66666652
Q ss_pred --CHHHHHHHHHH---HHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC-C-CCHHHHHHH
Q 008319 349 --DVPLLQEDIIR---RCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH-G-KFPLKAVKV 421 (570)
Q Consensus 349 --~v~~~qk~Ii~---~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~-G-~yP~eaV~~ 421 (570)
=.+...++|-+ .-.+.|.-+.+. +.... +. .-+..+...|+|.+++. |++ | .-|.+.++.
T Consensus 156 Q~f~~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGGI-~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~~ 222 (228)
T PRK08091 156 KAPSDLILDRVIQVENRLGNRRVEKLIS-------IDGSM-TL---ELASYLKQHQIDWVVSG--SALFSQGELKTTLKE 222 (228)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCCceEE-------EECCC-CH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHHHH
Confidence 12223333322 223344333221 22221 11 23456788999988875 444 2 247788777
Q ss_pred HHHH
Q 008319 422 MHTV 425 (570)
Q Consensus 422 m~~I 425 (570)
++..
T Consensus 223 l~~~ 226 (228)
T PRK08091 223 WKSS 226 (228)
T ss_pred HHHh
Confidence 7653
No 103
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.70 E-value=29 Score=38.02 Aligned_cols=124 Identities=19% Similarity=0.264 Sum_probs=69.8
Q ss_pred hhHHHhh-hhhhcCCcEEEecC-----C----------CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-
Q 008319 268 KDWEDIK-FGVDNQVDFYAVSF-----V----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA- 330 (570)
Q Consensus 268 kD~~dI~-~~~~~gvd~I~~Sf-----V----------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~- 330 (570)
.++.+.. ...+.|+|+|-+.+ + +.++.+.++-+.+.+. .+++|++|| ++ .+.++.+|++.
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl-~p-~~~~~~~~a~~~ 189 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKL-TP-NITDIREPARAA 189 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEc-CC-CcccHHHHHHHH
Confidence 4444443 33456788876542 1 2333444443334332 468999999 33 45567777664
Q ss_pred ----CCEEEE-----cCC--C---------cc--cCC----CCCCHHHHHHHHHHHHHHc---CCCEEEEccchhhhhcC
Q 008319 331 ----SDGAMV-----ARG--D---------LG--AEL----PIEDVPLLQEDIIRRCRSM---QKPVIVATNMLESMIDH 381 (570)
Q Consensus 331 ----sDgImI-----grG--D---------Lg--~ei----g~~~v~~~qk~Ii~~c~~~---gKPvivaTqmLeSM~~~ 381 (570)
+|||.+ +|- | |. ... |....+...+.|-+..+.. ..|+|-. .
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~---------G 260 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI---------G 260 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee---------c
Confidence 788883 221 1 10 011 1123445556655555554 5687743 3
Q ss_pred CCcChHHHhHHHHHHHhCccEEEec
Q 008319 382 PTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 382 ~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..-+ ..|+..+++.|+|+||+.
T Consensus 261 GI~s---~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 261 GIET---WRDAAEFILLGAGTVQVC 282 (420)
T ss_pred CcCC---HHHHHHHHHhCCChheee
Confidence 3322 457888999999999996
No 104
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.31 E-value=78 Score=34.21 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred CcccccCCCccCCCCCChhhHHHhhhh-hhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHH
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI 327 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~~-~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeI 327 (570)
|.|-..|+. .+|..++..|... .+.|+|.|=+.| +.+.++...++...+ .+.+..+.+.+-. -.+.++..
T Consensus 9 RDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a 80 (363)
T TIGR02090 9 RDGEQTPGV-----SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKA 80 (363)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHH
Confidence 444444543 3567787666544 468999997754 566777766666554 3556666665532 12334444
Q ss_pred HHh-CCEEEE--cCCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhC
Q 008319 328 ISA-SDGAMV--ARGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREG 399 (570)
Q Consensus 328 l~~-sDgImI--grGDLg~----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G 399 (570)
++. .|.|.+ +-.|+-. .+..++......+.++.|++.|..+.+.- .....-+...+.+++. +...|
T Consensus 81 ~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~------eda~r~~~~~l~~~~~~~~~~g 154 (363)
T TIGR02090 81 IDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA------EDATRTDIDFLIKVFKRAEEAG 154 (363)
T ss_pred HHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE------eecCCCCHHHHHHHHHHHHhCC
Confidence 444 665444 3333211 12234455666789999999999887642 1223334444555444 46679
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+|.+.|. +|.=.-+|.+.-+.+..+....
T Consensus 155 ~~~i~l~-DT~G~~~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 155 ADRINIA-DTVGVLTPQKMEELIKKLKENV 183 (363)
T ss_pred CCEEEEe-CCCCccCHHHHHHHHHHHhccc
Confidence 9999996 7777788999888888876544
No 105
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.29 E-value=19 Score=38.25 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=75.0
Q ss_pred hhhhhhcCCcEEEecCC--CC-----hhHH-HHHHHHHHhc--CCCceEEEeecCcchhhhHHHHHHh-----CCEEEEc
Q 008319 273 IKFGVDNQVDFYAVSFV--KD-----AKVV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----SDGAMVA 337 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV--~s-----a~dv-~~vr~~l~~~--~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImIg 337 (570)
++.+.+.|+|+|-+.+- .. ..+. ..+.+.++.. ..+++|++|+ ++ .+.++.++++. +|||.+.
T Consensus 120 a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 120 ARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeEEEE
Confidence 34445678999877431 11 1111 1233333322 2368999997 43 33455555543 7888663
Q ss_pred CCCcccCCCC--------------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEE
Q 008319 338 RGDLGAELPI--------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV 403 (570)
Q Consensus 338 rGDLg~eig~--------------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~v 403 (570)
-.=.+..+.+ .-.+...+.+-+..+..+.|+|-. ...-+ ..|+..++..|+|+|
T Consensus 198 n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~---------GGI~s---~~Da~e~l~aGA~~V 265 (334)
T PRK07565 198 NRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAAT---------TGVHD---AEDVIKMLLAGADVV 265 (334)
T ss_pred CCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEE---------CCCCC---HHHHHHHHHcCCCce
Confidence 2212221111 113344444444444557887743 33333 457888999999999
Q ss_pred EecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 008319 404 MLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 404 mLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (570)
++...--. +-| +++.+|+++.+..+
T Consensus 266 ~v~t~~~~-~g~----~~~~~i~~~L~~~l 290 (334)
T PRK07565 266 MIASALLR-HGP----DYIGTILRGLEDWM 290 (334)
T ss_pred eeehHHhh-hCc----HHHHHHHHHHHHHH
Confidence 99743322 113 45566666666544
No 106
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=82.12 E-value=19 Score=35.63 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=65.9
Q ss_pred hHHHhhhhhhcCCcEEEec--CCCChh--HHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCccc
Q 008319 269 DWEDIKFGVDNQVDFYAVS--FVKDAK--VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~S--fV~sa~--dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~ 343 (570)
+.+.++.+.+.|+|+|.+- ..+.+. .+.++-+.+.+.+ ++.+++.+.|++-. ....+. +|.+.+...++.-
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea---~~a~~~G~d~i~~~~~g~t~ 156 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEA---LNAAKLGFDIIGTTLSGYTE 156 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHH---HHHHHcCCCEEEccCccccc
Confidence 3457778889999987662 222232 5556666666666 67888876655432 222222 7888664332211
Q ss_pred C---CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 E---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 e---ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
. ..... ....+++.+ ..+.|++.. ...-+ ..|+..++..|+|++++.
T Consensus 157 ~~~~~~~~~-~~~l~~i~~---~~~ipvia~---------GGI~~---~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 157 ETAKTEDPD-FELLKELRK---ALGIPVIAE---------GRINS---PEQAAKALELGADAVVVG 206 (219)
T ss_pred cccCCCCCC-HHHHHHHHH---hcCCCEEEe---------CCCCC---HHHHHHHHHCCCCEEEEc
Confidence 1 11111 122233322 337999864 22222 246778888999999985
No 107
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=82.09 E-value=34 Score=35.17 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=70.3
Q ss_pred hhhH-HHhhhhhhcCCcEEEecCC-----------CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----
Q 008319 267 DKDW-EDIKFGVDNQVDFYAVSFV-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---- 330 (570)
Q Consensus 267 ~kD~-~dI~~~~~~gvd~I~~SfV-----------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~---- 330 (570)
..|. +..+.+.+.|+|+|-+.+- ++++.+.++-+.+.+. .++.+++|+-.....+++.++++.
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3444 4445666779999877542 2334444443334332 267899998765554456666553
Q ss_pred -CCEEEEcCCCccc--C------------CCCC---CHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHh
Q 008319 331 -SDGAMVARGDLGA--E------------LPIE---DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVS 390 (570)
Q Consensus 331 -sDgImIgrGDLg~--e------------ig~~---~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~ 390 (570)
+|+|.+.-+-.+. . -++. -.+...+.+-+..+.. +.|+|.. ...-+ ..
T Consensus 189 Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~---------GGI~~---~~ 256 (289)
T cd02810 189 GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGV---------GGIDS---GE 256 (289)
T ss_pred CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEE---------CCCCC---HH
Confidence 7988875221110 0 0111 1122333333344444 6888854 23322 24
Q ss_pred HHHHHHHhCccEEEec
Q 008319 391 DIAIAVREGADAVMLS 406 (570)
Q Consensus 391 Dv~nav~~G~D~vmLs 406 (570)
|+..++..|+|+|++.
T Consensus 257 da~~~l~~GAd~V~vg 272 (289)
T cd02810 257 DVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHcCccHheEc
Confidence 6778888999999986
No 108
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=81.99 E-value=13 Score=41.09 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=63.8
Q ss_pred EeecCcchhhhHHHHHHhCCEEEEcCC--------CcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhc
Q 008319 313 VKIESADSIPNLHSIISASDGAMVARG--------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMID 380 (570)
Q Consensus 313 aKIEt~~gv~NldeIl~~sDgImIgrG--------DLg~eig~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~ 380 (570)
+|+.++ +.=|+.++..+|.|++|=| .-|.++|- ++....-++|++.|...|+++++.+...-+=..
T Consensus 215 aKvsdK--i~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~ 292 (417)
T PTZ00005 215 AKVADK--IQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKF 292 (417)
T ss_pred ccHHhH--HHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEeccc
Confidence 377664 4456777888999998721 23344443 345566679999999999998875443311000
Q ss_pred CCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 008319 381 HPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSI 437 (570)
Q Consensus 381 ~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~ 437 (570)
.....+.++.+ .+.+. .|...|- +|. ++++...+++..++..+|+-.
T Consensus 293 ~~~~~~~~~~~-~~~ip--~~~~~lD----IGp---~Ti~~~~~~i~~akTV~wNGP 339 (417)
T PTZ00005 293 DNNANTKVVTD-KEGIP--DGWMGLD----AGP---KSIEEFAEAILRAKTIVWNGP 339 (417)
T ss_pred CCCCCeEEecC-ccCCC--CCCEEec----cCH---HHHHHHHHHHhhCCEEEEECC
Confidence 00000000000 00011 1111121 332 788999999999999888754
No 109
>PRK00915 2-isopropylmalate synthase; Validated
Probab=81.92 E-value=76 Score=36.05 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=99.1
Q ss_pred CCChhhHHHhhhh-hhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh---C--C--EE
Q 008319 264 SITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---S--D--GA 334 (570)
Q Consensus 264 ~lt~kD~~dI~~~-~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~---s--D--gI 334 (570)
.+|..|+..|... .+.|+|.|=+.| ..++.|...++.... ...+..+.+-.-.. .+.++..++. + + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 3577787666544 468999998776 557778777766544 34556666655322 2344444432 2 2 35
Q ss_pred EEcCCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH-HHhCccEEEecccc
Q 008319 335 MVARGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGET 409 (570)
Q Consensus 335 mIgrGDLg~----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ET 409 (570)
+++-.|+-+ ....+++.....+.++.|+++|.-|.+..+ ....-+...+.+++.+ ...|+|.+.|. +|
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DT 171 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAAIDAGATTINIP-DT 171 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHHHHcCCCEEEEc-cC
Confidence 555555422 123355666678899999999998875421 1222222335555544 45699999885 88
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 008319 410 AHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 410 A~G~yP~eaV~~m~~I~~~a 429 (570)
.=+-.|.+.-+++..+.+..
T Consensus 172 vG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 172 VGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 88889999999988887654
No 110
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=81.91 E-value=70 Score=33.38 Aligned_cols=228 Identities=13% Similarity=0.014 Sum_probs=128.0
Q ss_pred CcccccCCCccCCCCCChhhHHHhhhhh-hc-CCcEEEec-CCCChhHHHHHHHHHHhcC-----CCceEEEeecCcchh
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKFGV-DN-QVDFYAVS-FVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSI 321 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~~~-~~-gvd~I~~S-fV~sa~dv~~vr~~l~~~~-----~~i~IiaKIEt~~gv 321 (570)
|.|..-|+.. +|.+++..|...+ +. |+|.|=+. |.-++++.+.+++..+... .+..+++.+....+
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~- 79 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKS- 79 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHH-
Confidence 4555555544 4667887777664 54 99999775 5478877776766654321 13566666554443
Q ss_pred hhHHHHHHh-CCEEEEc--CCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCC-CcChHHHhHHH
Q 008319 322 PNLHSIISA-SDGAMVA--RGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIA 393 (570)
Q Consensus 322 ~NldeIl~~-sDgImIg--rGDLg~e----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~-~PtrAEv~Dv~ 393 (570)
++..++. .|.|-+. =.|.-.. ...++.....+++++.|+++|..+.+.-.. ..+| +-+...+.+++
T Consensus 80 --~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 80 --VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLV 153 (280)
T ss_pred --HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHH
Confidence 4444444 5655443 1221111 122456666778899999999887664211 1112 11233355555
Q ss_pred H-HHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCCcEEEE
Q 008319 394 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVF 472 (570)
Q Consensus 394 n-av~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv~ 472 (570)
. +...|+|.+-|. +|.=.-.|.+.-++++.+...... ....-+ .-++.. +|.+-...|-+.++-.|=.
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~~~-~~i~~H-------~Hnd~G--la~AN~laA~~aGa~~vd~ 222 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRYPN-LHFDFH-------AHNDYD--LAVANVLAAVKAGIKGLHT 222 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhCCC-CeEEEE-------eCCCCC--HHHHHHHHHHHhCCCEEEE
Confidence 4 566799999995 777777899999988888654321 111111 112222 3333445566667755555
Q ss_pred cCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcE
Q 008319 473 TRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVM 511 (570)
Q Consensus 473 T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~ 511 (570)
|-.|-. -|+ +-++.+.++.-|....|+.
T Consensus 223 s~~GlG------e~a-----GN~~~E~~v~~L~~~~g~~ 250 (280)
T cd07945 223 TVNGLG------ERA-----GNAPLASVIAVLKDKLKVK 250 (280)
T ss_pred eccccc------ccc-----cCccHHHHHHHHHHhcCCC
Confidence 555544 121 1244566666665445654
No 111
>PRK04302 triosephosphate isomerase; Provisional
Probab=81.28 E-value=31 Score=34.48 Aligned_cols=136 Identities=15% Similarity=0.208 Sum_probs=77.5
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhc-CCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCC-cccCCCCC-
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD-LGAELPIE- 348 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~-~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGD-Lg~eig~~- 348 (570)
++...+.|+|+|.++.-++.....++++.+..+ ...+.+|. +..+ .+.+..+.+. .|.|-+.|-+ .|...+..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~--~v~~-~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~ 154 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV--CVNN-PETSAAAAALGPDYVAVEPPELIGTGIPVSK 154 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE--EcCC-HHHHHHHhcCCCCEEEEeCccccccCCCCCc
Confidence 455567899999999754444344444443322 12344553 3333 3455555444 4666665543 33333321
Q ss_pred CHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHH
Q 008319 349 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (570)
..+....++++..++. +.|++.. ...-+ -.++..+...|+|+++..+....-..|.+.++-+.
T Consensus 155 ~~~~~i~~~~~~ir~~~~~~pvi~G---------ggI~~---~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNPDVKVLCG---------AGIST---GEDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEE---------CCCCC---HHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 2345556666777763 5787752 22222 23566677899999999877766677777666443
No 112
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.06 E-value=3.5 Score=44.54 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=43.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 99 r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
.+-.+-+.+||.-++.|..+.|+++|+|++=|..+||..+...++++.+|+
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 367788889999899999999999999999999999999988777777765
No 113
>PRK14057 epimerase; Provisional
Probab=80.54 E-value=68 Score=33.30 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=88.8
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCC---------CceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcc
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA---------DIHVIVKIESADSIPNLHSIISASDGAMVARGDLG 342 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~---------~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg 342 (570)
.|+.-.+.|+|+|.+- ++...++...-+++++.|. ...+.-+-+| -++.++.++..+|.|+| ++
T Consensus 90 ~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv----Mt 162 (254)
T PRK14057 90 AAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL----LA 162 (254)
T ss_pred HHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----EE
Confidence 3444457899988665 4655666666677777775 3566667777 57899999999999999 77
Q ss_pred cCCCCC---CHHHHHHHHHHH---HHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC--CCC
Q 008319 343 AELPIE---DVPLLQEDIIRR---CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH--GKF 414 (570)
Q Consensus 343 ~eig~~---~v~~~qk~Ii~~---c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~--G~y 414 (570)
++-|+. -.+...++|-+. -.+.|..+.+. +.... + ..-+..++..|+|.+++. |++ ...
T Consensus 163 V~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGGI-~---~~ti~~l~~aGad~~V~G--SalF~~~d 229 (254)
T PRK14057 163 VNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDGSL-T---QDQLPSLIAQGIDRVVSG--SALFRDDR 229 (254)
T ss_pred ECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EECCC-C---HHHHHHHHHCCCCEEEEC--hHhhCCCC
Confidence 777762 233344444332 23445444331 22221 1 123557788999988875 454 236
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008319 415 PLKAVKVMHTVALRTES 431 (570)
Q Consensus 415 P~eaV~~m~~I~~~aE~ 431 (570)
+.++++.|+++...+-.
T Consensus 230 ~~~~i~~l~~~~~~~~~ 246 (254)
T PRK14057 230 LVENTRSWRAMFKVAGD 246 (254)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 78899998877666554
No 114
>PLN03034 phosphoglycerate kinase; Provisional
Probab=80.52 E-value=16 Score=41.16 Aligned_cols=268 Identities=19% Similarity=0.169 Sum_probs=138.9
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCC-h---HHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccC
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGD-H---ASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~-~---e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~ 175 (570)
.|+|-+++ .+|+.|++.|..+.=+ ||-. + +....+-.-....++.++ ++|...=|.-||+++--
T Consensus 114 d~RI~a~l-------pTI~~L~~~gakvVl~--SHlGRPkg~~~~~SL~pva~~Ls~lL~-~~V~fv~d~~G~~~~~~-- 181 (481)
T PLN03034 114 DTRIRAAI-------PTIKYLISNGAKVILS--SHLGRPKGVTPKFSLAPLVPRLSELLG-IQVVKADDCIGPEVEKL-- 181 (481)
T ss_pred hHhHHHHH-------HHHHHHHHCCCeEEEE--EecCCCCCCCcccCHHHHHHHHHHHhC-CCeEECCCCCCHHHHHH--
Confidence 45555554 4799999999987554 7743 2 111122222233344555 88888888888876511
Q ss_pred CCceeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCccccc
Q 008319 176 PQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV 255 (570)
Q Consensus 176 ~~~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn~ 255 (570)
--.|+.|+.+.|-.-+....++. |.++|.+.+.+.--||+.|.-=.
T Consensus 182 --i~~l~~GeVlLLENvRF~~eE~~---nd~~fa~~LA~l~DiyVNDAFgt----------------------------- 227 (481)
T PLN03034 182 --VASLPEGGVLLLENVRFYKEEEK---NEPEFAKKLASLADLYVNDAFGT----------------------------- 227 (481)
T ss_pred --HhcCCCCcEEEEeccCcCccccc---CcHHHHHHHHhhCCEEEecchhh-----------------------------
Confidence 12567788877765443322221 44566666655444787772110
Q ss_pred CCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCC-ceEE--EeecCcchhhhHHHHHHhCC
Q 008319 256 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISASD 332 (570)
Q Consensus 256 p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~-i~Ii--aKIEt~~gv~NldeIl~~sD 332 (570)
.+-.-+.+. -+...++ .-+ ..|. =.+++..+.+.+..-... +.|+ +||.++ +.=|+.+++.+|
T Consensus 228 --aHR~haS~v-----Gi~~~l~--ps~--aG~L-mekEl~~L~k~~~~p~rP~vaIlGGaKVsdK--I~vi~~Ll~kvD 293 (481)
T PLN03034 228 --AHRAHASTE-----GVTKFLK--PSV--AGFL-LQKELDYLVGAVSNPKRPFAAIVGGSKVSSK--IGVIESLLEKCD 293 (481)
T ss_pred --hHhcccchh-----hhhhhcC--cch--hhHH-HHHHHHHHHHHHcCCCCceEEEEcCccHHhH--HHHHHHHHHhcC
Confidence 000000000 0000000 000 0000 012333334444322221 2233 377765 445777788899
Q ss_pred EEEEcCC-------CcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCcc
Q 008319 333 GAMVARG-------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 401 (570)
Q Consensus 333 gImIgrG-------DLg~eig~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D 401 (570)
.+++|=| -+|.++|. ++....-++|++++++.|+.+++.....-.=.......+.++ + ...+-+ |
T Consensus 294 ~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~~~~~~~~~-~-~~~Ip~--~ 369 (481)
T PLN03034 294 ILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIV-P-ASAIPD--G 369 (481)
T ss_pred EEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccCCCCCeEEe-e-hhcCCC--C
Confidence 9999832 24556654 345566679999999999988865443321111111111111 1 122322 2
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCC
Q 008319 402 AVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSIT 438 (570)
Q Consensus 402 ~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~ 438 (570)
...|- +|. ++++...+++.++...+|+-.+
T Consensus 370 ~~~lD----IGp---~Ti~~~~~~i~~akTI~WNGPm 399 (481)
T PLN03034 370 WMGLD----IGP---DSVKTFNEALDTTQTVIWNGPM 399 (481)
T ss_pred CEEEe----cCH---HHHHHHHHHHhhCCEEEEECCc
Confidence 33342 554 8899999999999998887543
No 115
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.40 E-value=18 Score=38.90 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=136.9
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCH
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV 350 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v 350 (570)
+.|+.-.+.|+|.|-++ |.+.++...+++.-+ +.+++++|-|-- +--..+.++.+-+|.|=|-||.+|-
T Consensus 38 ~QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~------- 106 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF------- 106 (346)
T ss_pred HHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC-------
Confidence 44555567899999887 678888877776654 567999998843 3334456666679999999999876
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcc--chhh--hhcCCCcChHH-----HhHHHHHHHhCccEEEecccccCCCCHHHHHHH
Q 008319 351 PLLQEDIIRRCRSMQKPVIVATN--MLES--MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 421 (570)
Q Consensus 351 ~~~qk~Ii~~c~~~gKPvivaTq--mLeS--M~~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~ 421 (570)
..--+.++++|+++|+|+=+-.+ =|+. |.....||..- ...+.-+-..|++=+.+| .....+..+++.
T Consensus 107 ~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS---~KsSdv~~~i~a 183 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLS---MKASDVAETVAA 183 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHHHH
Confidence 35667999999999999744322 2221 11222344322 333455566788888887 445556677776
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCCcEEE-EcCChHHHHHHHhcCCCCeEEEEeCCHHH
Q 008319 422 MHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIV-FTRTGSMAVILSHYRPSSTIFAFTNQERI 500 (570)
Q Consensus 422 m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv-~T~sG~tA~~ls~~RP~~pIiavt~~~~t 500 (570)
-+.+.++.+.-+.. =-.+........+..+++.++. +++-++-.|=| +|..---=..++ ..+
T Consensus 184 yr~la~~~dyPLHl--GVTEAG~~~~G~IKSaigig~L-L~~GIGDTIRVSLT~dP~~EV~va--------------~~I 246 (346)
T TIGR00612 184 YRLLAERSDYPLHL--GVTEAGMGVKGIVKSSAGIGIL-LARGIGDTIRVSLTDDPTHEVPVA--------------FEI 246 (346)
T ss_pred HHHHHhhCCCCcee--ccccCCCCCCchhHHHHHHHHH-HhhCCCCeEEEECCCCcHHHHHHH--------------HHH
Confidence 66665554411110 0001111112234555555433 44445544433 665443323333 366
Q ss_pred HHHhccc-cCcEEEEecCC----CCHHHHHHHHHHHHH
Q 008319 501 KQRLVLY-QGVMPIYMQFS----DDVEETFSRAIKLLM 533 (570)
Q Consensus 501 aRrL~L~-rGV~Pil~~~~----~d~d~~i~~al~~lk 533 (570)
.+.|.|. +|+.=+.+|.- .|.....++..+.+.
T Consensus 247 L~slglr~~g~~iiSCPtCGR~~~dl~~~~~~ve~~l~ 284 (346)
T TIGR00612 247 LQSLGLRARGVEIVACPSCGRTGFDVEKVVRRVQEALF 284 (346)
T ss_pred HHHcCCCcCCCeEEECCCCCCcCCCHHHHHHHHHHHHh
Confidence 7778876 66766666543 355555555555554
No 116
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.37 E-value=59 Score=31.58 Aligned_cols=136 Identities=14% Similarity=0.138 Sum_probs=76.0
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCc-chhhhHHHHHHh-CCEEEEcCCCcccCCCCCC
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-DSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~-~gv~NldeIl~~-sDgImIgrGDLg~eig~~~ 349 (570)
+++.+.+.|+|+|.+.+......+.++.++.++.| +++++-+-++ +-.+.+....+. +|.+-+.||-=+-..+...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 56667799999998887655445666777776654 5565543232 223444555553 8999887753222222222
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 425 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I 425 (570)
+. ++-+..+....+.+.+ .... +. ..+..+...|+|++.+.+.--.-+-|.++++.++++
T Consensus 146 ~~----~i~~l~~~~~~~~i~v--------~GGI-~~---~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 146 FE----DLQTILKLVKEARVAV--------AGGI-NL---DTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HH----HHHHHHHhcCCCcEEE--------ECCc-CH---HHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 21 1222222222343431 2222 32 235577889999998854433335688888887654
No 117
>PRK07695 transcriptional regulator TenI; Provisional
Probab=80.24 E-value=28 Score=34.03 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=74.3
Q ss_pred hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHH
Q 008319 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPL 352 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~ 352 (570)
..+...|+|+|-++.- ...+..+++.+ .+..|-+.+.|.+ .+.+..+. +|.+++|+-.-+..-+-....
T Consensus 67 ~la~~~~~~gvHl~~~--~~~~~~~r~~~----~~~~ig~s~~s~e---~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~- 136 (201)
T PRK07695 67 DIALLLNIHRVQLGYR--SFSVRSVREKF----PYLHVGYSVHSLE---EAIQAEKNGADYVVYGHVFPTDCKKGVPAR- 136 (201)
T ss_pred HHHHHcCCCEEEeCcc--cCCHHHHHHhC----CCCEEEEeCCCHH---HHHHHHHcCCCEEEECCCCCCCCCCCCCCC-
Confidence 3466778888877752 22244455433 2445555444432 23333333 899998874433221100000
Q ss_pred HHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHH
Q 008319 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (570)
Q Consensus 353 ~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (570)
-.+.+-+.+...++|++.. ... +. .++..+...|+|++.+.+.-.....|.++++.+.++..
T Consensus 137 g~~~l~~~~~~~~ipvia~---------GGI-~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 137 GLEELSDIARALSIPVIAI---------GGI-TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred CHHHHHHHHHhCCCCEEEE---------cCC-CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 0122222233457999864 222 22 34666678999999988776666789999998887654
No 118
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=79.85 E-value=34 Score=39.31 Aligned_cols=155 Identities=14% Similarity=0.171 Sum_probs=103.8
Q ss_pred hhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEeecC--cchhhhHHHHHHhCCEEEEcCCCccc
Q 008319 268 KDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIES--ADSIPNLHSIISASDGAMVARGDLGA 343 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt--~~gv~NldeIl~~sDgImIgrGDLg~ 343 (570)
...+.|....+.|+|.|-+. -.+.|+.+..+++.|...|.+++++|-|-- .-|+ +-++.+|.|=|-||.++-
T Consensus 46 atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~----~a~~~vdkiRINPGNi~~ 121 (606)
T PRK00694 46 GTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAM----HVADFVDKVRINPGNYVD 121 (606)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHH----HHHHhcCceEECCcccCC
Confidence 33455666678999997555 445555666677778888999999998833 2222 223348999999999976
Q ss_pred C---------------CCCCCHHHHHHHHHHHHHHcCCCEEEEcc-------chhhhhcCCCcChHH-----HhHHHHHH
Q 008319 344 E---------------LPIEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMIDHPTPTRAE-----VSDIAIAV 396 (570)
Q Consensus 344 e---------------ig~~~v~~~qk~Ii~~c~~~gKPvivaTq-------mLeSM~~~~~PtrAE-----v~Dv~nav 396 (570)
. -.++++..--+.++++|+++|+|+=+-++ +|+.. . +|..- +..+--+-
T Consensus 122 ~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~y--G--~tpegmVeSAle~~~i~e 197 (606)
T PRK00694 122 KRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRY--G--DTIEGMVYSALEYIEVCE 197 (606)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--C--CCHHHHHHHHHHHHHHHH
Confidence 1 12245666667999999999999866554 23321 1 22211 33344556
Q ss_pred HhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 008319 397 REGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 397 ~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (570)
..|++=+.+| ..-..|...|+.-+.+..+.++.-
T Consensus 198 ~~~f~diviS---~KsSnv~~mi~AyrlLa~~~d~eg 231 (606)
T PRK00694 198 KLDYRDVVFS---MKSSNPKVMVAAYRQLAKDLDARG 231 (606)
T ss_pred HCCCCcEEEE---EEcCCHHHHHHHHHHHHHHhhccC
Confidence 7899999998 455668888888888887777543
No 119
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=79.69 E-value=50 Score=33.38 Aligned_cols=149 Identities=20% Similarity=0.162 Sum_probs=86.8
Q ss_pred CCCChhhHHHh-hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-----CCEEEE
Q 008319 263 PSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMV 336 (570)
Q Consensus 263 p~lt~kD~~dI-~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImI 336 (570)
|..|+.|.+.+ +.+.++|+..|+++ +..+...++.|. +..+.+.+=|--|.|....+.-+.. .||.--
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 67788887544 67889999999887 778888888883 5568888887777776544333322 122100
Q ss_pred cCCCcccCCCC---CCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecccccC
Q 008319 337 ARGDLGAELPI---EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAH 411 (570)
Q Consensus 337 grGDLg~eig~---~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETA~ 411 (570)
=|+-+.++. .++..+.++|...... .++++=+ +...+.-+..|+.++.. ++..|+|.+--|.--+.
T Consensus 91 --iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKv-------IlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 91 --IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKV-------IIETCLLTDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred --EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEE-------EeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 012222322 2344444444433332 2443322 13456667777777766 77789996654422212
Q ss_pred CCCHHHHHHHHHHHH
Q 008319 412 GKFPLKAVKVMHTVA 426 (570)
Q Consensus 412 G~yP~eaV~~m~~I~ 426 (570)
|.--.+.|+.|.+.+
T Consensus 162 ~gat~~~v~~m~~~~ 176 (221)
T PRK00507 162 GGATVEDVKLMRETV 176 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 233478888887665
No 120
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=79.61 E-value=19 Score=34.75 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=66.1
Q ss_pred ChhhHHHhhhhhhcCCcEEEe--cCCCC--hhHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh-CCEEEEcC
Q 008319 266 TDKDWEDIKFGVDNQVDFYAV--SFVKD--AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~--SfV~s--a~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDgImIgr 338 (570)
+..+..++..++..++++|=+ +|... .+.++.++++ ..+..+++ |+.+.. -.-+++..+. +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h- 84 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL- 84 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE-
Confidence 444555555555555888766 56432 2333334332 23556666 666552 1224666665 8988873
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.+..+...+++++.|+++|++++++. .+ ..|.. +...+...|+|.+.+.
T Consensus 85 --------~~~~~~~~~~~i~~~~~~g~~~~v~~-------~~-~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 --------GAAPLSTIKKAVKAAKKYGKEVQVDL-------IG-VEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred --------eeCCHHHHHHHHHHHHHcCCeEEEEE-------eC-CCCHH---HHHHHHHCCCCEEEEc
Confidence 11122456789999999999998630 11 11222 3445777899998883
No 121
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=79.21 E-value=76 Score=35.00 Aligned_cols=191 Identities=21% Similarity=0.180 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeecCCCeee-eccCCCceeecCCCEEEEEEecCCCCccE-EEe-ccCCcccccccCCEE
Q 008319 142 KTIDLVKEYNSQFEDKAVAIMLDTKGPEVR-SGDVPQPIILKEGQEFNFTIKRGVSTEDT-VSV-NYDDFVNDVEVGDIL 218 (570)
Q Consensus 142 ~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR-~G~~~~~i~l~~G~~v~lt~~~~~~~~~~-i~v-~~~~l~~~v~~Gd~I 218 (570)
++...|+.+-+.. ...+.+-.++.+-+.+ .|. +.|+..++.....+ +|= ++..+--.++.|++|
T Consensus 10 el~~~ik~~le~~-~~~v~v~gEis~~~~~~sGH------------~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v 76 (438)
T PRK00286 10 ELNRYVKSLLERD-LGQVWVRGEISNFTRHSSGH------------WYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKV 76 (438)
T ss_pred HHHHHHHHHHHhh-CCcEEEEEEeCCCeeCCCCe------------EEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEE
Confidence 4455555554442 2578888887776654 232 34444322222222 221 233444567899988
Q ss_pred EEe--------CCeeEEEEEEEeCCeEEEEEEeCcEec----------cCcccccCCCccCCCCCChhhHHHhhhhhhcC
Q 008319 219 LVD--------GGMMSLAVKSKTKDLVKCIVVDGGELK----------SRRHLNVRGKSANLPSITDKDWEDIKFGVDNQ 280 (570)
Q Consensus 219 ~iD--------DG~i~l~V~~~~~~~i~~~v~~gG~l~----------s~KgIn~p~~~~~lp~lt~kD~~dI~~~~~~g 280 (570)
.+. .|.++|.|.++++..+ |.|. ..+|.-=|....++|.+..
T Consensus 77 ~v~g~~~~y~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~------------- 136 (438)
T PRK00286 77 LVRGKVSLYEPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAEGLFDPERKKPLPFFPK------------- 136 (438)
T ss_pred EEEEEEEEECCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCC-------------
Confidence 764 7778888777765441 2221 2334433444455555432
Q ss_pred CcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--------CCEEEEcCCCcccCCCCCCH-H
Q 008319 281 VDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--------SDGAMVARGDLGAELPIEDV-P 351 (570)
Q Consensus 281 vd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--------sDgImIgrGDLg~eig~~~v-~ 351 (570)
-|++=--.+++-++.+...+........+..-==+.+|-....+|++. .|.|+|+||-=+. +++ +
T Consensus 137 --~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~----eDL~~ 210 (438)
T PRK00286 137 --RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSL----EDLWA 210 (438)
T ss_pred --EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCH----HHhhc
Confidence 222222256666666666666554432222211223333344444443 3999999994332 222 2
Q ss_pred HHHHHHHHHHHHcCCCEEEE
Q 008319 352 LLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 352 ~~qk~Ii~~c~~~gKPviva 371 (570)
.-...++++..+...|||.|
T Consensus 211 Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 211 FNDEAVARAIAASRIPVISA 230 (438)
T ss_pred cCcHHHHHHHHcCCCCEEEe
Confidence 22457788888889999987
No 122
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=79.07 E-value=31 Score=36.68 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=65.1
Q ss_pred hHHHhhhhhhcCCcEEEecCCCC-hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP 346 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~s-a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig 346 (570)
..+.+...++.++++|..+|-.- .+.++.++ + ..+++|.++-|.+. +...++. +|+|++-=.+=|-+.+
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~----~--~gi~v~~~v~s~~~---A~~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLH----A--AGIKVIPQVTSVRE---ARKAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHH----H--TT-EEEEEESSHHH---HHHHHHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHHHH----H--cCCccccccCCHHH---HHHhhhcCCCEEEEeccccCCCCC
Confidence 44567777888999999998765 34333433 2 35889998866544 4455555 9998876444444444
Q ss_pred C--CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 347 I--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 347 ~--~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
. +.+..+..++.+.. .+|||.|--+ +.-.+++.++..|+|++.+-
T Consensus 173 ~~~~~~~~L~~~v~~~~---~iPViaAGGI------------~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRDAV---DIPVIAAGGI------------ADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp -SSG-HHHHHHHHHHH----SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred ccccceeeHHHHHhhhc---CCcEEEecCc------------CCHHHHHHHHHcCCCEeecC
Confidence 1 12444444554433 4999987432 23456889999999999863
No 123
>PRK15447 putative protease; Provisional
Probab=78.68 E-value=22 Score=37.37 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=73.9
Q ss_pred hhHHHhhhhh-hcCCcEEEecCCC-------ChhHHHHHHHHHHhcCCCceE-EEee-cCcchhhhHHHHHHh-CCEEEE
Q 008319 268 KDWEDIKFGV-DNQVDFYAVSFVK-------DAKVVHELKDYLKSCNADIHV-IVKI-ESADSIPNLHSIISA-SDGAMV 336 (570)
Q Consensus 268 kD~~dI~~~~-~~gvd~I~~SfV~-------sa~dv~~vr~~l~~~~~~i~I-iaKI-Et~~gv~NldeIl~~-sDgImI 336 (570)
.+.+++-.++ +.|+|.|-++... +.+++.+.-+++.+.|.++.+ +..| -..+-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 4456666665 5699998887332 557888888888888887665 3355 445566777777776 577777
Q ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccccc
Q 008319 337 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 337 grGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (570)
+|+|. + ..+++.|.|++..|||=- .| .. .+.-+-..|++.+.||-|-.
T Consensus 95 --~d~g~------l--------~~~~e~~~~l~~d~~lni---~N-----~~--a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 --NDLGA------V--------RLLAERGLPFVAGPALNC---YN-----AA--TLALLARLGATRWCMPVELS 142 (301)
T ss_pred --eCHHH------H--------HHHHhcCCCEEEeccccc---CC-----HH--HHHHHHHcCCcEEEECCcCC
Confidence 35542 1 223334999998877410 11 11 12233456899999987754
No 124
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=78.54 E-value=52 Score=32.54 Aligned_cols=130 Identities=17% Similarity=0.124 Sum_probs=66.9
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeec---------------CcchhhhHHHHHHh-CC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE---------------SADSIPNLHSIISA-SD 332 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIE---------------t~~gv~NldeIl~~-sD 332 (570)
+.++++..++.|+|.|.++.. .-++...+++..+..+.+..+++ |. ..+.++.++...+. +|
T Consensus 84 ~~e~~~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 84 SLEDIERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred CHHHHHHHHHcCCCEEEECch-HHhChHHHHHHHHHcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 456667777889999877632 22333445555555554222222 11 11122223333333 78
Q ss_pred EEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC
Q 008319 333 GAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (570)
Q Consensus 333 gImIg-rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (570)
++.+- +.--+..-| ..+ +.+-+.++....|++.. ...-+.. |+..+...|+|++|+..---.
T Consensus 162 ~iii~~~~~~g~~~g-~~~----~~i~~i~~~~~ipvi~~---------GGi~~~~---di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 162 AIIYTDISRDGTLSG-PNF----ELYKELAAATGIPVIAS---------GGVSSLD---DIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred EEEEEeecCCCccCC-CCH----HHHHHHHHhcCCCEEEe---------cCCCCHH---HHHHHHHCCCCEEEEeHHHHc
Confidence 88774 211122222 221 22223344558999864 3444444 455556669999999765556
Q ss_pred CCCHHH
Q 008319 412 GKFPLK 417 (570)
Q Consensus 412 G~yP~e 417 (570)
|.++.+
T Consensus 225 ~~~~~~ 230 (234)
T cd04732 225 GKITLE 230 (234)
T ss_pred CCCCHH
Confidence 665543
No 125
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=78.45 E-value=12 Score=40.55 Aligned_cols=154 Identities=17% Similarity=0.267 Sum_probs=85.8
Q ss_pred HHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEee--cCcchhhhHHHHHHhCCEEEEcCCCcccCC
Q 008319 270 WEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGAEL 345 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaKI--Et~~gv~NldeIl~~sDgImIgrGDLg~ei 345 (570)
.+.|..-.+.|+|.|-++ -.+.++.+.++++.|.+.|.+++++|-| .-.-|++. ++.+|.|=|-||.++-++
T Consensus 34 v~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a----~~~v~kiRINPGNi~~~~ 109 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA----IEAVDKIRINPGNIVDEF 109 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH----HHC-SEEEE-TTTSS---
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH----HHHhCeEEECCCcccccc
Confidence 455566668899987554 4455555666777788889999999988 33444433 333899999999996322
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCCEEEEcc--chhh-hhcCCCcChHH-----HhHHHHHHHhCccEEEecccccCCCCH
Q 008319 346 --PIEDVPLLQEDIIRRCRSMQKPVIVATN--MLES-MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFP 415 (570)
Q Consensus 346 --g~~~v~~~qk~Ii~~c~~~gKPvivaTq--mLeS-M~~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (570)
+...+..--+.++++|+++|+|+=+-.+ =|+. |...-.||..- ...+.-+-..|+|-+.+|- .-..+
T Consensus 110 ~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSl---KsSdv 186 (359)
T PF04551_consen 110 QEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISL---KSSDV 186 (359)
T ss_dssp -SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEE---EBSSH
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEE---EeCCh
Confidence 2235677889999999999999744322 1211 11000122111 2233445567888888874 33445
Q ss_pred HHHHHHHHHHHHHhh
Q 008319 416 LKAVKVMHTVALRTE 430 (570)
Q Consensus 416 ~eaV~~m~~I~~~aE 430 (570)
..+|+.-+.+.++..
T Consensus 187 ~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 187 PETIEAYRLLAERMD 201 (359)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcC
Confidence 566665555555444
No 126
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=78.21 E-value=31 Score=40.46 Aligned_cols=154 Identities=14% Similarity=0.219 Sum_probs=97.5
Q ss_pred hhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEeecC--cchhhhHHHHHHhCCEEEEcCCCccc
Q 008319 268 KDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIES--ADSIPNLHSIISASDGAMVARGDLGA 343 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt--~~gv~NldeIl~~sDgImIgrGDLg~ 343 (570)
.-.+.|....+.|+|.|-+. -.+.|+.+..+++.|.+.|.+++++|-|-- .-|+ +-++.+|.|=|-||.++-
T Consensus 111 atv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a~~~vdkiRINPGN~~~ 186 (733)
T PLN02925 111 ATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFAD 186 (733)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH----HHHHhcCCeEECCcccCC
Confidence 33455666678999997655 345555556667777778899999998832 2233 334449999999999987
Q ss_pred CCC---------------CCCHHHHHHHHHHHHHHcCCCEEEEcc-------chhhhhcCCCcC-hHH--HhHHHHHHHh
Q 008319 344 ELP---------------IEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMIDHPTPT-RAE--VSDIAIAVRE 398 (570)
Q Consensus 344 eig---------------~~~v~~~qk~Ii~~c~~~gKPvivaTq-------mLeSM~~~~~Pt-rAE--v~Dv~nav~~ 398 (570)
.-- ++++..--..++++|+++|+|+=+-|+ +|+.- ..+|. ..| +.-+--+-..
T Consensus 187 ~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~y--Gdtp~gmVeSAle~~~i~e~~ 264 (733)
T PLN02925 187 RRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYY--GDSPRGMVESAFEFARICRKL 264 (733)
T ss_pred ccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh--CCChHHHHHHHHHHHHHHHHC
Confidence 521 123333445799999999999866554 22211 11221 001 2334455678
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
|++=+++|- .-..|...|...+.+..+.+
T Consensus 265 ~f~diviS~---KsSn~~~~V~AyR~La~~L~ 293 (733)
T PLN02925 265 DYHNFVFSM---KASNPVVMVQAYRLLVAEMY 293 (733)
T ss_pred CCCcEEEEE---EcCChHHHHHHHHHHHHHHH
Confidence 999999984 45566667766666666644
No 127
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=78.03 E-value=26 Score=34.80 Aligned_cols=126 Identities=19% Similarity=0.288 Sum_probs=64.9
Q ss_pred hhHHHhhhhhhcCCcEEEecC--CCChhHHHHHHHHHHhcCCC-ceEEEe-----ecCcc----hhhhHHHHH----Hh-
Q 008319 268 KDWEDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNAD-IHVIVK-----IESAD----SIPNLHSII----SA- 330 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~Sf--V~sa~dv~~vr~~l~~~~~~-i~IiaK-----IEt~~----gv~NldeIl----~~- 330 (570)
++.+|++.+.+.|+|.|.++- .++++ .++++.+..+.+ +.+-.. +++.. .-.+..+++ +.
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~---~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPD---LVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHH---HHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 567888888899999887662 24443 455555555533 322111 11110 001223333 33
Q ss_pred CCEEEEcCCCcccC---CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 331 SDGAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 331 sDgImIgrGDLg~e---ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
+|.+++. |+..+ -| .+ ....+++ ++....|++.+ ...-+.+ |+..+...|+|++|+..
T Consensus 159 ~~~ii~~--~~~~~g~~~g-~~-~~~i~~i---~~~~~ipvia~---------GGi~~~~---di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 159 LEGIIYT--DISRDGTLSG-PN-FELTKEL---VKAVNVPVIAS---------GGVSSID---DLIALKKLGVYGVIVGK 219 (230)
T ss_pred CCEEEEE--eecCCCCcCC-CC-HHHHHHH---HHhCCCCEEEe---------CCCCCHH---HHHHHHHCCCCEEEEeH
Confidence 7888863 33222 22 12 1222233 33467898864 4444444 45556678999999853
Q ss_pred cccCCCCH
Q 008319 408 ETAHGKFP 415 (570)
Q Consensus 408 ETA~G~yP 415 (570)
-=-.|.+|
T Consensus 220 a~~~~~~~ 227 (230)
T TIGR00007 220 ALYEGKIT 227 (230)
T ss_pred HHHcCCCC
Confidence 33344444
No 128
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=77.89 E-value=92 Score=32.34 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=62.3
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-----CCEEEEcC---C---Ccc-------cCC----CCC
Q 008319 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR---G---DLG-------AEL----PIE 348 (570)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImIgr---G---DLg-------~ei----g~~ 348 (570)
+++.+.++-+.+.+. .+++|++||- ..+++..++++. +|+|.+.- | |+. ... |..
T Consensus 141 ~~~~~~eiv~~vr~~-~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~ 217 (300)
T TIGR01037 141 DPELSADVVKAVKDK-TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPA 217 (300)
T ss_pred CHHHHHHHHHHHHHh-cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchh
Confidence 444444443344332 2578999994 133444455442 79998731 1 211 111 111
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
..+...+.+-+.....+.|+|.. ...-+ ..|+..++..|+|+||+.... =..| .+.+++..+
T Consensus 218 ~~~~~l~~v~~i~~~~~ipvi~~---------GGI~s---~~da~~~l~~GAd~V~igr~~--l~~p----~~~~~i~~~ 279 (300)
T TIGR01037 218 IKPIALRMVYDVYKMVDIPIIGV---------GGITS---FEDALEFLMAGASAVQVGTAV--YYRG----FAFKKIIEG 279 (300)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEE---------CCCCC---HHHHHHHHHcCCCceeecHHH--hcCc----hHHHHHHHH
Confidence 22233344444445568998853 33322 346778888999999996432 2345 233444444
Q ss_pred hhcC
Q 008319 429 TESS 432 (570)
Q Consensus 429 aE~~ 432 (570)
.++.
T Consensus 280 l~~~ 283 (300)
T TIGR01037 280 LIAF 283 (300)
T ss_pred HHHH
Confidence 4443
No 129
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=77.84 E-value=26 Score=34.34 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=66.4
Q ss_pred hhHHHhhhhhhcCCcEEEecCC-CChhHH-H-HHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--CCEEEEcCCCcc
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFV-KDAKVV-H-ELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLG 342 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV-~sa~dv-~-~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDgImIgrGDLg 342 (570)
++.+|++.+.+.|+|+|.+=|. .|+..+ . ..+++.+.....+.-++=+-+. -++++.+++.. .|+|-++-.|
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e-- 83 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE-- 83 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC--
Confidence 3567888999999999988875 355555 3 3344443333323333334343 35666677765 6899987432
Q ss_pred cCCCCCCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccccc
Q 008319 343 AELPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 343 ~eig~~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (570)
+.+ .++..++ .|++++-+ +.-...+. .+...+...|+|.+++-..|.
T Consensus 84 ---~~~--------~~~~l~~~~~~~~i~~-------i~~~~~~~---~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 ---SPE--------YCAQLRARLGLPVIKA-------IRVKDEED---LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred ---CHH--------HHHHHHhhcCCcEEEE-------EecCChhh---HHHhhhccccCCEEEEcCCCC
Confidence 111 1222222 37777733 11111111 123456678999999865544
No 130
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.73 E-value=72 Score=32.26 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=71.5
Q ss_pred HHhhhhhhcCCcEEEecCCC----------ChhHHHHHHHHHHhcCCCceEEEe-------e---c---CcchhhhHHHH
Q 008319 271 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIHVIVK-------I---E---SADSIPNLHSI 327 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~----------sa~dv~~vr~~l~~~~~~i~IiaK-------I---E---t~~gv~NldeI 327 (570)
+.++++.++|+|+|-+++.. +.+++.++++.+++.|-.+.-+.- + + ..++++.+...
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 56677889999999887532 356788899999988866543320 1 0 12356666666
Q ss_pred HHh-----CCEEEEcCCCcccCCC----CCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHH
Q 008319 328 ISA-----SDGAMVARGDLGAELP----IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV 396 (570)
Q Consensus 328 l~~-----sDgImIgrGDLg~eig----~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav 396 (570)
++. ++.|.+..++...+-. .+.+....+++...+.++|..+.+ |.|-..-.++.++..++...+
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v 172 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI 172 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc
Confidence 655 5677765333211111 123344456677778888876553 444333455556666665555
No 131
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=77.64 E-value=41 Score=35.66 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=97.5
Q ss_pred cCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCc
Q 008319 305 CNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP 384 (570)
Q Consensus 305 ~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~P 384 (570)
.|........|.+++-=+-..++..++|.+++---|..+ +|++++.+- . ++.+--++| ..-
T Consensus 93 ~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA~------l--~~e~~kliA----------~V~ 153 (376)
T COG1465 93 RGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIAD------L--QHEKVKLIA----------GVK 153 (376)
T ss_pred cCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHHH------h--hccceEEEE----------Eec
Confidence 455566888898888777777777778987775456554 566654221 1 111222332 123
Q ss_pred ChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcC-CCC--------CCCC--C-------Cccc--
Q 008319 385 TRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS-LPV--------SITP--P-------TQFS-- 444 (570)
Q Consensus 385 trAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~-~~~--------~~~~--~-------~~~~-- 444 (570)
+-.|..-.+..+..|+|+++|.++ .| +-+|-...+.+++|+. +.. +.+- + .+..
T Consensus 154 saeEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~g 227 (376)
T COG1465 154 SAEEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRG 227 (376)
T ss_pred cHHHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhccceeEEEEEEEEEEeecCCCceEEEeeecccccC
Confidence 445555667889999999999755 45 5677778888888842 110 0000 0 0000
Q ss_pred -----------CC----CCChhHHHHHHHHHHHhhcCC-cEEEEcCC-hHHHHHHHhcCCCCeEEEEeCCHHH
Q 008319 445 -----------AH----KSHMGDMFAFHSTTMANTLNT-PIIVFTRT-GSMAVILSHYRPSSTIFAFTNQERI 500 (570)
Q Consensus 445 -----------~~----~~~~~~~ia~~av~~a~~~~a-~Iiv~T~s-G~tA~~ls~~RP~~pIiavt~~~~t 500 (570)
.| .+.-....| .-.++.|| ++=.+-+. |.-.++||-.|+.=+|+.+-.+.++
T Consensus 228 EGMLVGs~s~gmFlVhsEs~espYVA----aRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~ 296 (376)
T COG1465 228 EGMLVGSQSRGMFLVHSESEESPYVA----ARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRT 296 (376)
T ss_pred CceEeecccCcEEEEecccccCcccc----cCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCce
Confidence 00 000011110 12345677 76666665 7777899999999999888777554
No 132
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=77.49 E-value=67 Score=36.33 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=100.6
Q ss_pred CcccccCCCccCCCCCChhhHHHhhhh-hhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHH
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI 327 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~~-~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeI 327 (570)
|.|-..|+.. +|..|+..|... .+.|+|.|=+.| +.+..|...++.+.. ...+..+.+-.-. --+.+|.-
T Consensus 10 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~--~~~did~a 81 (494)
T TIGR00973 10 RDGEQSPGAS-----LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARC--VEKDIDAA 81 (494)
T ss_pred CccCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCC--CHHhHHHH
Confidence 3444455543 577888777554 468999997765 566788877766553 3344555555432 12233433
Q ss_pred HHh-----CCE--EEEcCCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH---HhHHH
Q 008319 328 ISA-----SDG--AMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIA 393 (570)
Q Consensus 328 l~~-----sDg--ImIgrGDLg~e----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE---v~Dv~ 393 (570)
++. .+. +++.-.|+-.+ +..+++.....+.++.|++.|..|.+. ....+|++ +.+++
T Consensus 82 ~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~---------~Ed~~r~d~~~l~~~~ 152 (494)
T TIGR00973 82 AEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS---------CEDAGRTEIPFLARIV 152 (494)
T ss_pred HHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---------cCCCCCCCHHHHHHHH
Confidence 332 232 33333343322 122456677778999999999987764 22344444 44444
Q ss_pred H-HHHhCccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 394 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 394 n-av~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
. +...|+|.+.|. +|.=.-.|.+.-+.+..+.+..
T Consensus 153 ~~~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 153 EAAINAGATTINIP-DTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred HHHHHcCCCEEEeC-CCCCCCCHHHHHHHHHHHHHhh
Confidence 4 456699999995 8888899999988888887654
No 133
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.25 E-value=13 Score=40.06 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=79.4
Q ss_pred hhHHHhhhhhhcCCcEEEecCC----------CChhHHHHHHHHHHhcCCCceEEEee-cCcch----hhhHHHHHHh-C
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSCNADIHVIVKI-ESADS----IPNLHSIISA-S 331 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV----------~sa~dv~~vr~~l~~~~~~i~IiaKI-Et~~g----v~NldeIl~~-s 331 (570)
.+.++++.+++.|+|.|-+++- =+-+++.+..++..+.|.++.+..-+ =.... .+-++...+. .
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv 93 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV 93 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 5778899999999998877733 34567888888888888875544422 11111 3344455544 8
Q ss_pred CEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcC--CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccc
Q 008319 332 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (570)
Q Consensus 332 DgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~g--KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (570)
|+|+++ |+| ++..+++.+ .|+-+.||+.= .|+ . .+--+-..|+.-++|+-|.
T Consensus 94 Daviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v---~N~--~-----~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 94 DAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV---TNA--E-----TAKFWKELGAKRVVLPREL 147 (347)
T ss_pred CEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec---CCH--H-----HHHHHHHcCCEEEEeCccC
Confidence 999995 665 467788888 99999988432 111 1 2333455699999999886
Q ss_pred c
Q 008319 410 A 410 (570)
Q Consensus 410 A 410 (570)
+
T Consensus 148 s 148 (347)
T COG0826 148 S 148 (347)
T ss_pred C
Confidence 5
No 134
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=77.13 E-value=82 Score=31.37 Aligned_cols=134 Identities=14% Similarity=0.100 Sum_probs=75.9
Q ss_pred hhHHHhhhhhhcCCcEE--EecCCCChh------HHHHHHHHHHhcCCCceEEEeecCcc-h--------hhhHHH---H
Q 008319 268 KDWEDIKFGVDNQVDFY--AVSFVKDAK------VVHELKDYLKSCNADIHVIVKIESAD-S--------IPNLHS---I 327 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I--~~SfV~sa~------dv~~vr~~l~~~~~~i~IiaKIEt~~-g--------v~Nlde---I 327 (570)
.....++.+++.|+|.| .+. ..... ++.++++...+. .+++|. |... | -+.+.. +
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~-~~~~~~~~~~~~i~~v~~~~~~~--g~~~ii--e~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVY-VGSEEEREMLEELARVAAEAHKY--GLPLIA--WMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEe-cCCchHHHHHHHHHHHHHHHHHc--CCCEEE--EEeccCCcccCccCHHHHHHHHHH
Confidence 34455778889999977 332 22222 333344433333 344444 3311 1 122222 1
Q ss_pred H-Hh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCC-CcChHH-HhHHHHHHHhCccEE
Q 008319 328 I-SA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAE-VSDIAIAVREGADAV 403 (570)
Q Consensus 328 l-~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~-~PtrAE-v~Dv~nav~~G~D~v 403 (570)
. +. +|.|.+.. . - . ....+++ ++...+|+.++ -.+ ..|..+ ...+..+...|++++
T Consensus 152 a~~~GaD~Ik~~~---~--~---~-~~~~~~i---~~~~~~pvv~~--------GG~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 152 GAELGADIVKTKY---T--G---D-AESFKEV---VEGCPVPVVIA--------GGPKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred HHHHCCCEEEecC---C--C---C-HHHHHHH---HhcCCCCEEEe--------CCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 1 11 78888842 1 1 1 1223333 33456897653 222 234333 556788899999999
Q ss_pred EecccccCCCCHHHHHHHHHHHH
Q 008319 404 MLSGETAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 404 mLs~ETA~G~yP~eaV~~m~~I~ 426 (570)
.....-.....|.++++.++++.
T Consensus 212 ~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 212 AVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred EechhhhcCCCHHHHHHHHHHHh
Confidence 99888888888999999998875
No 135
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=77.08 E-value=33 Score=34.47 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=87.4
Q ss_pred CCCChhhHHHh-hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--------CCE
Q 008319 263 PSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--------SDG 333 (570)
Q Consensus 263 p~lt~kD~~dI-~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--------sDg 333 (570)
|..|+.|.+.+ +.+.++++..|+++ +..+...++.|. +.++++.+=|=-|.|-...+.-+.. +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 67788887554 67888999988885 778888888884 4578888888777776654332222 443
Q ss_pred EEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHH-HHHHHhCccEEEec
Q 008319 334 AMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI-AIAVREGADAVMLS 406 (570)
Q Consensus 334 ImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv-~nav~~G~D~vmLs 406 (570)
|=+ -+.++. ..+..-.++|.+.|. |+|+-+ +||. +.-+..|+... --++..|+|.+=-|
T Consensus 87 iDv-----v~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 87 VDM-----VINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred EEe-----ecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 322 122331 234444455555554 888766 3442 22344554443 34678899998654
Q ss_pred ccccCCCCHHHHHHHHHHHHH
Q 008319 407 GETAHGKFPLKAVKVMHTVAL 427 (570)
Q Consensus 407 ~ETA~G~yP~eaV~~m~~I~~ 427 (570)
.-=+.+.=.++.|+.|.+++.
T Consensus 153 TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 153 TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHhc
Confidence 111112224688888888875
No 136
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=77.05 E-value=36 Score=35.96 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=79.0
Q ss_pred EecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-
Q 008319 285 AVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR- 362 (570)
Q Consensus 285 ~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~- 362 (570)
++.-..++++|.++++.. +++||+|+=-- =+...+.+.+. +|.| | ..+..-+ -..++...+
T Consensus 56 g~~Rm~~p~~I~aIk~~V-----~iPVigk~Rig-h~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K~ 118 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV-----SIPVMAKARIG-HFVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDKW 118 (293)
T ss_pred CeeecCCHHHHHHHHHhC-----CCCeEEeehhh-HHHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHHH
Confidence 344557888888777654 67888876321 15666666666 8887 4 3332222 113333333
Q ss_pred HcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 363 SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 363 ~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
+.+.|++.- -..+.+.-+++..|+|+|--+||...|+ -+|||+-|+.|-.+.-...-
T Consensus 119 ~f~~~fmad--------------~~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 119 DFTVPFVCG--------------ARNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred HcCCCEEcc--------------CCCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHhC
Confidence 347787631 1235667899999999999999998998 78999999999988876443
No 137
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.99 E-value=21 Score=36.64 Aligned_cols=98 Identities=19% Similarity=0.278 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
.+++.++.+|.++. .+..++ |+=..+.+|.+.+. .+.+=||-+||.. + .+++.+.+.|||+|+
T Consensus 55 ~e~~~~L~~~~~~~--gi~f~s---tpfd~~s~d~l~~~~~~~~KIaS~dl~n------~-----~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 55 EEQHKELFEYCKEL--GIDFFS---TPFDEESVDFLEELGVPAYKIASGDLTN------L-----PLLEYIAKTGKPVIL 118 (241)
T ss_dssp HHHHHHHHHHHHHT--T-EEEE---EE-SHHHHHHHHHHT-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEE
T ss_pred HHHHHHHHHHHHHc--CCEEEE---CCCCHHHHHHHHHcCCCEEEeccccccC------H-----HHHHHHHHhCCcEEE
Confidence 45566667777654 355666 33444444555444 8999999999862 2 367778889999998
Q ss_pred EccchhhhhcCCCcChHHHhHHHHHH-HhCccEEEecccccCCCCHH
Q 008319 371 ATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL 416 (570)
Q Consensus 371 aTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ETA~G~yP~ 416 (570)
+|- .-|.+|+.+..+.+ ..|.+-+.|-. -+..||.
T Consensus 119 STG---------~stl~EI~~Av~~~~~~~~~~l~llH--C~s~YP~ 154 (241)
T PF03102_consen 119 STG---------MSTLEEIERAVEVLREAGNEDLVLLH--CVSSYPT 154 (241)
T ss_dssp E-T---------T--HHHHHHHHHHHHHHCT--EEEEE--E-SSSS-
T ss_pred ECC---------CCCHHHHHHHHHHHHhcCCCCEEEEe--cCCCCCC
Confidence 765 56678999998888 55555444432 2446774
No 138
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=76.76 E-value=15 Score=36.52 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=75.3
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCC----
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI---- 347 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~---- 347 (570)
-++.-.+.|+|+|.+- +++.++..++-+++++.|....+..+-+| .++.+++++...|.|++ ++++-|.
T Consensus 72 ~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~Gq~ 144 (201)
T PF00834_consen 72 YIEEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGGQK 144 (201)
T ss_dssp HHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSSB-
T ss_pred HHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCccc
Confidence 3444457899988766 46777888888899998888888888887 57889999999999999 7777766
Q ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCC-CcChHHHhHHHHHHHhCccEEEec
Q 008319 348 --EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 348 --~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~-~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+.+..-.+++-+...+.|..+.+. +... ... -+..+...|+|.+++.
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~-----~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEE-----NIKQLVEAGADIFVAG 194 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTT-----THHHHHHHT--EEEES
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHH-----HHHHHHHcCCCEEEEC
Confidence 234444445555555556555442 2222 211 2456778999988764
No 139
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=76.54 E-value=64 Score=35.54 Aligned_cols=137 Identities=16% Similarity=0.162 Sum_probs=80.8
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEE-eecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCC
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~Iia-KIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~ 349 (570)
+++.+.+.|+|+|.++.-.+...+.++.++.++.|.. ++. .+-....++.+.+..+. +|.|.+++|--+...+. .
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~--~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~ 149 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVR--LMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGK-D 149 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCE--EEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCC-C
Confidence 6777889999998865332323455566666665543 332 12222345566666666 89998887643222222 2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (570)
.....+++.. ..+.|+.+.. .. +. ..+..++..|+|++.+.+.-..-.-|.++++.+.+.+.
T Consensus 150 ~~~~l~~l~~---~~~iPI~a~G---------GI-~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 150 PLELLKEVSE---EVSIPIAVAG---------GL-DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred hHHHHHHHHh---hCCCcEEEEC---------CC-CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 2223333332 3468887632 22 22 33667789999999887655444568888888777654
No 140
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=76.52 E-value=42 Score=32.52 Aligned_cols=132 Identities=13% Similarity=0.051 Sum_probs=71.9
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCCC-
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELP- 346 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~eig- 346 (570)
+++.+.+.|+|+|-++.- ......++... +....+-+.+ . +.+|+.+. +|.|.+++-.=+..=+
T Consensus 73 ~~~~a~~~gad~vh~~~~--~~~~~~~~~~~---~~~~~~g~~~--~----t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 73 RVDLALAVGADGVHLGQD--DLPVADARALL---GPDAIIGLST--H----TLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred hHHHHHHcCCCEEecCcc--cCCHHHHHHHc---CCCCEEEEeC--C----CHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 356677889999877642 12223333322 2333333332 2 33444333 8999987533222111
Q ss_pred CC-CH-HHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHH
Q 008319 347 IE-DV-PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (570)
Q Consensus 347 ~~-~v-~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (570)
.. .. ....+++.+.. ...|++... .. +. .++..+...|+|++.+.+.-..-..|.++++.+.+
T Consensus 142 ~~~~~g~~~~~~~~~~~--~~~~v~a~G---------GI-~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 142 AKAPQGLEGLREIRAAV--GDIPIVAIG---------GI-TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred CCCCCCHHHHHHHHHhc--CCCCEEEEC---------Cc-CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 00 11 22333333322 128888642 22 22 45777889999999987554445679999998887
Q ss_pred HHHHh
Q 008319 425 VALRT 429 (570)
Q Consensus 425 I~~~a 429 (570)
++.++
T Consensus 207 ~~~~~ 211 (212)
T PRK00043 207 AFRAA 211 (212)
T ss_pred HHhhc
Confidence 76654
No 141
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.52 E-value=50 Score=34.58 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=69.4
Q ss_pred CCCChhhHHHh--------hhhhhcCCcEEEecCC-------------CChhH------------HHH-HHHHHHhcCCC
Q 008319 263 PSITDKDWEDI--------KFGVDNQVDFYAVSFV-------------KDAKV------------VHE-LKDYLKSCNAD 308 (570)
Q Consensus 263 p~lt~kD~~dI--------~~~~~~gvd~I~~SfV-------------~sa~d------------v~~-vr~~l~~~~~~ 308 (570)
..+|..|++.+ +.+.+.|+|+|-+-.. +...| +.+ ++..-+..+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46788888776 3456789999865432 12111 111 11222223677
Q ss_pred ceEEEeecCcc----------hhhhHHHHHHh-CCEEEEcCCCcccCCCC----CCHHHHHHHHHHHH-HHcCCCEEEEc
Q 008319 309 IHVIVKIESAD----------SIPNLHSIISA-SDGAMVARGDLGAELPI----EDVPLLQEDIIRRC-RSMQKPVIVAT 372 (570)
Q Consensus 309 i~IiaKIEt~~----------gv~NldeIl~~-sDgImIgrGDLg~eig~----~~v~~~qk~Ii~~c-~~~gKPvivaT 372 (570)
..|..||--.+ +++-++.+.+. +|.|-+..|+..-.... ..-.......++.. +..+.|++...
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 88999986332 22222333333 79998887775322110 00011222233332 33478988643
Q ss_pred cchhhhhcCCCcChHHHhHHHHHHHh-CccEEEec
Q 008319 373 NMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLS 406 (570)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs 406 (570)
. .-+. .+...++.. |+|.|++.
T Consensus 289 g---------i~t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 289 G---------IRDP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred C---------CCCH---HHHHHHHHCCCCCeeeec
Confidence 2 2223 345567777 79999985
No 142
>PRK08005 epimerase; Validated
Probab=76.29 E-value=72 Score=32.05 Aligned_cols=130 Identities=8% Similarity=0.062 Sum_probs=84.1
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCC---
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE--- 348 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~--- 348 (570)
.|+.-.+.|+|.|.+- +++..+..++-+++++.|....+--+-+| -++.++.++...|.|+| ++++-|+.
T Consensus 73 ~i~~~~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv----MsV~PGf~GQ~ 145 (210)
T PRK08005 73 WLPWLAAIRPGWIFIH-AESVQNPSEILADIRAIGAKAGLALNPAT--PLLPYRYLALQLDALMI----MTSEPDGRGQQ 145 (210)
T ss_pred HHHHHHHhCCCEEEEc-ccCccCHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHhcCEEEE----EEecCCCccce
Confidence 4444557899988766 46556676677888888998888888887 57789999999999998 77777662
Q ss_pred CHHHHHHHHHHHHHHcCC-CEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC--CCCHHHHHHHHH
Q 008319 349 DVPLLQEDIIRRCRSMQK-PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH--GKFPLKAVKVMH 423 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~gK-PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~--G~yP~eaV~~m~ 423 (570)
-++...++|-+..+.... .+- +.... + ..-+..++..|+|.+++. |++ .+-|.+.++.|.
T Consensus 146 f~~~~~~KI~~l~~~~~~~~I~---------VDGGI-~---~~~i~~l~~aGad~~V~G--saiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 146 FIAAMCEKVSQSREHFPAAECW---------ADGGI-T---LRAARLLAAAGAQHLVIG--RALFTTANYDVTLSQFT 208 (210)
T ss_pred ecHHHHHHHHHHHHhcccCCEE---------EECCC-C---HHHHHHHHHCCCCEEEEC--hHhhCCCCHHHHHHHHh
Confidence 344455555543322211 222 22221 1 122456788999988885 443 234667666553
No 143
>PLN02591 tryptophan synthase
Probab=76.23 E-value=69 Score=33.01 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=73.5
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEE--EcCCCcccCCCC-
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM--VARGDLGAELPI- 347 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgIm--IgrGDLg~eig~- 347 (570)
+-++.+.+.|+|++.++=.. .++..++++.+++.|-+ .|.-+=--..-+.+..|++.++|.+ |++ .|+. |.
T Consensus 97 ~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~--~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvT-G~~ 170 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIE--LVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVT-GAR 170 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCe--EEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCc-CCC
Confidence 34566778999999988442 35566667777665544 4444411122457899999987554 233 2222 21
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 348 ~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..++...+..++.+++ .++|+.+- ...-+. .++..+...|+|++...
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vG---------FGI~~~---e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVG---------FGISKP---EHAKQIAGWGADGVIVG 218 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEe---------CCCCCH---HHHHHHHhcCCCEEEEC
Confidence 2455666777777776 48998874 223233 35667788899999975
No 144
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.01 E-value=25 Score=36.98 Aligned_cols=126 Identities=15% Similarity=0.242 Sum_probs=83.5
Q ss_pred HHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccch-
Q 008319 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML- 375 (570)
Q Consensus 298 vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmL- 375 (570)
++.+.++.+..+++....... .++.+.+.++. .+.||+.-- ++++++....-+++.+.|+.+|.++=..-.-+
T Consensus 67 ~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~ 141 (293)
T PRK07315 67 IENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIG 141 (293)
T ss_pred HHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCccc
Confidence 344444444467899999997 67777776666 889999643 45778888889999999999999983322212
Q ss_pred --hhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHH----HHHHHHHHHHHHh
Q 008319 376 --ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL----KAVKVMHTVALRT 429 (570)
Q Consensus 376 --eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~----eaV~~m~~I~~~a 429 (570)
|-+...... .....+...++..|+|++-++--|..|.||- --.+.+.+|....
T Consensus 142 g~ed~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 142 GEEDGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred CcCccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 112111111 1234455667789999999998899999974 2344555555444
No 145
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.25 E-value=40 Score=33.93 Aligned_cols=134 Identities=12% Similarity=0.020 Sum_probs=77.5
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHH
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVP 351 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~ 351 (570)
+..+...|+|+|=++ ++-.++.++|+.+ +.+. +|.- =+....++..+..+. +|.+.+||- +.. ..-..-+
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~---~~~~-iiG~-s~~~s~~~a~~A~~~gaDYv~~Gpv-~t~-tK~~~~p 150 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKH---APKM-IVGF-GNLRDRHGAMEIGELRPDYLFFGKL-GAD-NKPEAHP 150 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhc---CCCC-EEEe-cCCCCHHHHHHhhhcCCCEEEECCC-CCC-CCCCCCC
Confidence 455667789988777 3333466666655 2222 3332 111122223332223 899999986 332 1111111
Q ss_pred HHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 352 ~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
.-...+-+.++....||+-- -.-. ..++..+...|+|++-+.+.-..-..|.++++-+..++.+
T Consensus 151 ~gl~~l~~~~~~~~iPvvAI--------GGI~-----~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 151 RNLSLAEWWAEMIEIPCIVQ--------AGSD-----LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CChHHHHHHHHhCCCCEEEE--------eCCC-----HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 11111223466678998752 2222 2346677899999999988877788899999988888753
No 146
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=75.06 E-value=51 Score=33.68 Aligned_cols=146 Identities=13% Similarity=0.121 Sum_probs=82.2
Q ss_pred CCCChhhHH-HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecC--cch--------hhhHHHHHHh-
Q 008319 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIES--ADS--------IPNLHSIISA- 330 (570)
Q Consensus 263 p~lt~kD~~-dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt--~~g--------v~NldeIl~~- 330 (570)
|.-+..|.+ -+..+.++|+|.|+++. ..+...++. .+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 444566654 55778899999998872 222222222 2456778888843 221 2346677766
Q ss_pred CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhh-hcCCCcChHHHhH-HHHHHHhCccEEEeccc
Q 008319 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM-IDHPTPTRAEVSD-IAIAVREGADAVMLSGE 408 (570)
Q Consensus 331 sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM-~~~~~PtrAEv~D-v~nav~~G~D~vmLs~E 408 (570)
+|+|-+--- .+- .+-.+.....+++.+.|+++|.|+++- ++-. .+.+..+..++.. ...+...|+|.+-.+
T Consensus 104 a~~v~~~~~-~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~-- 176 (258)
T TIGR01949 104 ADAVSIHVN-VGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP-- 176 (258)
T ss_pred CCEEEEEEe-cCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc--
Confidence 776655311 111 121244466788999999999999872 1100 0011112233444 355667999999975
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 008319 409 TAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~ 428 (570)
|+ .-++.|++++..
T Consensus 177 -----~~-~~~~~l~~~~~~ 190 (258)
T TIGR01949 177 -----YT-GDIDSFRDVVKG 190 (258)
T ss_pred -----CC-CCHHHHHHHHHh
Confidence 22 135556666543
No 147
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=74.99 E-value=75 Score=31.59 Aligned_cols=192 Identities=15% Similarity=0.164 Sum_probs=105.2
Q ss_pred CChhhHHHhh-hhhhcCCcEEEec-CCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH----h-CCEEEE-
Q 008319 265 ITDKDWEDIK-FGVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS----A-SDGAMV- 336 (570)
Q Consensus 265 lt~kD~~dI~-~~~~~gvd~I~~S-fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~----~-sDgImI- 336 (570)
++..++..|. .-.+.|+|.|=+. ..-+.++...++.+.+.... ..+.+..-. ..+.++..++ . .|.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRA--NEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEES--CHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeee--hHHHHHHHHHhhHhccCCEEEec
Confidence 5667775554 4457899998777 34566777777665544322 333333322 2223333222 3 665544
Q ss_pred -cCCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHH-hCccEEEeccccc
Q 008319 337 -ARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETA 410 (570)
Q Consensus 337 -grGDLg~e----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA 410 (570)
.-.|+-.. ...++......++++.+++.|..+.+.. ......+..++.+.+..+. .|+|.+.|. +|.
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~ 160 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC------EDASRTDPEELLELAEALAEAGADIIYLA-DTV 160 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE------TTTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETT
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc------cccccccHHHHHHHHHHHHHcCCeEEEee-Ccc
Confidence 33331111 1113445566788999999999997642 2334455667777766665 499999985 777
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCCcEEEEcCCh
Q 008319 411 HGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTG 476 (570)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv~T~sG 476 (570)
=.-.|.++-+.++.+-++.-. ....-+ .-++.. +|.+....|-+.++-+|=.|-.|
T Consensus 161 G~~~P~~v~~lv~~~~~~~~~-~~l~~H-------~Hnd~G--la~An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 161 GIMTPEDVAELVRALREALPD-IPLGFH-------AHNDLG--LAVANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp S-S-HHHHHHHHHHHHHHSTT-SEEEEE-------EBBTTS---HHHHHHHHHHTT-SEEEEBGGG
T ss_pred CCcCHHHHHHHHHHHHHhccC-CeEEEE-------ecCCcc--chhHHHHHHHHcCCCEEEccCcc
Confidence 777898888888777766553 111101 112233 23444556667777555555544
No 148
>PRK08999 hypothetical protein; Provisional
Probab=74.86 E-value=36 Score=35.48 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q 008319 114 REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (570)
Q Consensus 114 ~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 155 (570)
.+.+++++.+|+..+-|-.-+.+.++..+.++.+++..++.+
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~ 188 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAG 188 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 367889999999999999999999888888888888766554
No 149
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=74.53 E-value=99 Score=31.07 Aligned_cols=135 Identities=10% Similarity=0.153 Sum_probs=95.4
Q ss_pred hhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCC--CC-HHHH
Q 008319 277 VDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--ED-VPLL 353 (570)
Q Consensus 277 ~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~--~~-v~~~ 353 (570)
.+.|++.+.+- ++-.++..++-+++++.|....+-.|=+| .|+.++..++..|.+.| .++|=|+ .+ ++..
T Consensus 84 a~agas~~tfH-~E~~q~~~~lv~~ir~~Gmk~G~alkPgT--~Ve~~~~~~~~~D~vLv----MtVePGFGGQkFme~m 156 (224)
T KOG3111|consen 84 AKAGASLFTFH-YEATQKPAELVEKIREKGMKVGLALKPGT--PVEDLEPLAEHVDMVLV----MTVEPGFGGQKFMEDM 156 (224)
T ss_pred HhcCcceEEEE-EeeccCHHHHHHHHHHcCCeeeEEeCCCC--cHHHHHHhhccccEEEE----EEecCCCchhhhHHHH
Confidence 36789975433 35557788889999999988888888888 47888888888998888 6677666 23 3444
Q ss_pred HHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 354 QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 354 qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
..++-..-.++..+.|=- --...|. -+..+...|+++++-..-----.-|-++++.|++.++.+-
T Consensus 157 m~KV~~lR~kyp~l~iev-------DGGv~~~-----ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEV-------DGGVGPS-----TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred HHHHHHHHHhCCCceEEe-------cCCcCcc-----hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 455555556888888821 1122333 3667788899988875444456779999999999887664
No 150
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=74.47 E-value=1.4e+02 Score=32.58 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=94.5
Q ss_pred CCChhhHHHhhhh-hhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEE--cC
Q 008319 264 SITDKDWEDIKFG-VDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV--AR 338 (570)
Q Consensus 264 ~lt~kD~~dI~~~-~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImI--gr 338 (570)
.+|..++..|... .+.|+|.|=+.|-. +.++...++... +.+.+..+++-.-. -.+.++..++. .|.|-+ .-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 3466777666544 46899998766543 334444454443 34555555555322 13345554544 564433 33
Q ss_pred CCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH-HHhCccEEEecccccCCC
Q 008319 339 GDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGK 413 (570)
Q Consensus 339 GDLg~----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETA~G~ 413 (570)
.|+-. .+..++.....++.++.+++.|..|.+. ......-+...+.+++.+ ...|+|.+.|. +|.=.-
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~ 171 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS------AEDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGIL 171 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE------eccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCC
Confidence 33211 1223455666678999999999987764 123333444555555544 55799999996 888788
Q ss_pred CHHHHHHHHHHHHHHh
Q 008319 414 FPLKAVKVMHTVALRT 429 (570)
Q Consensus 414 yP~eaV~~m~~I~~~a 429 (570)
.|.+.-+.+..+....
T Consensus 172 ~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 172 DPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999988887665
No 151
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=74.26 E-value=1.1e+02 Score=33.25 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=93.2
Q ss_pred cCcccccCCCccCCCCCChhhHHHhhh-hhhcCCcEEEe-cCCCChh------HHHHHHHHHHh-cCCCceEEEeecCcc
Q 008319 249 SRRHLNVRGKSANLPSITDKDWEDIKF-GVDNQVDFYAV-SFVKDAK------VVHELKDYLKS-CNADIHVIVKIESAD 319 (570)
Q Consensus 249 s~KgIn~p~~~~~lp~lt~kD~~dI~~-~~~~gvd~I~~-SfV~sa~------dv~~vr~~l~~-~~~~i~IiaKIEt~~ 319 (570)
-|.|..-|++. ++..++..|.. -.+.|++.|=+ ||+ +++ |-.++.+.+.. .+..+..++ =+.+
T Consensus 54 lRDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l~--~n~~ 125 (347)
T PLN02746 54 PRDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVLT--PNLK 125 (347)
T ss_pred CCccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEEc--CCHH
Confidence 45555666654 45567655544 45789999854 566 432 32233333332 122223332 2333
Q ss_pred hhhhHHHHHHh-CCEEEEc--CCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhh-cCCCcChHH---
Q 008319 320 SIPNLHSIISA-SDGAMVA--RGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMI-DHPTPTRAE--- 388 (570)
Q Consensus 320 gv~NldeIl~~-sDgImIg--rGDLg~----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~-~~~~PtrAE--- 388 (570)
+++. .++. .|.|.+. -.|+=. ....++.....+++++.++++|..+-.. =||. ..|.-+|.+
T Consensus 126 die~---A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~----is~~fg~p~~~r~~~~~ 198 (347)
T PLN02746 126 GFEA---AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY----VSCVVGCPIEGPVPPSK 198 (347)
T ss_pred HHHH---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE----EEeeecCCccCCCCHHH
Confidence 4333 3333 5654432 222211 1233567777789999999999988421 0122 234444444
Q ss_pred HhHH-HHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 389 VSDI-AIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 389 v~Dv-~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+.++ -.+...|+|.+.|. +|.=--.|.++.+.+..+..+.
T Consensus 199 l~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred HHHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHhC
Confidence 3333 45778899999995 7776677999999998886543
No 152
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=74.22 E-value=6.3 Score=41.98 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=40.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHH
Q 008319 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (570)
Q Consensus 101 tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 150 (570)
.-+.+.+|+..+..+.++.++++|++++=+|++||..+.+.++|+.+|+.
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 83 LLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred ceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34455667655678889999999999999999999998888888888763
No 153
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.17 E-value=12 Score=39.33 Aligned_cols=67 Identities=7% Similarity=0.211 Sum_probs=50.0
Q ss_pred hhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEe--ecCcchhhhHHHHHHh-CCEEEEcC
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~-sDgImIgr 338 (570)
-.+.+++..+++.|+|+|.+-.. +.++++++...+++.+.++++.|- | -.+|+.+.++. +|+|.++.
T Consensus 203 v~tleea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 203 TETLEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 35677788888999999999965 678888777777655566555442 3 25688888888 99999974
No 154
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=73.96 E-value=18 Score=37.50 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=57.6
Q ss_pred HHhhhhhhc-CCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcC
Q 008319 271 EDIKFGVDN-QVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 271 ~dI~~~~~~-gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgr 338 (570)
+.+++.++. |+++|++. .....|...-++...+..+.++.||+-+- |.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 455788889 99998654 22223333334444555566789999884 44556655555555 89999865
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~-gKPviva 371 (570)
-...- ..-+++...-+. .|.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~~---v~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYRE---IIAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHHH---HHHhcCCCCEEEE
Confidence 43321 222333333344 45556 8999974
No 155
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.92 E-value=42 Score=33.56 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 353 ~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
....+++.|+++|.|++ |--.-.+++..|...|+|.+=+--
T Consensus 85 ~~~~vi~~a~~~~i~~i--------------PG~~TptEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 85 TTQELLAAANDSDVPLL--------------PGAATPSEVMALREEGYTVLKFFP 125 (201)
T ss_pred CCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEECC
Confidence 45789999999999988 333334568899999999998843
No 156
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=73.80 E-value=80 Score=29.69 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.3
Q ss_pred ChHHHhHHHHHHHhCccEEEecccccCCCC----HHHHHHHHHHHHHHh
Q 008319 385 TRAEVSDIAIAVREGADAVMLSGETAHGKF----PLKAVKVMHTVALRT 429 (570)
Q Consensus 385 trAEv~Dv~nav~~G~D~vmLs~ETA~G~y----P~eaV~~m~~I~~~a 429 (570)
+..-+..+..+...|+|++++..- .+.. +-+.++....++.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAA 110 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHh
Confidence 454577788899999999998521 1111 466688888888876
No 157
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=73.70 E-value=49 Score=34.82 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=76.5
Q ss_pred CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH-cCCC
Q 008319 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQKP 367 (570)
Q Consensus 290 ~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~-~gKP 367 (570)
+++++|+++++.. +++||+++--- -+...+++.++ +|.| | ..+-+-+ -..++...+. ++.|
T Consensus 52 ~~~~~I~~Ik~~V-----~iPVIGi~K~~-~~~Ea~~L~eaGvDiI-----D-aT~r~rP-----~~~~~~~iK~~~~~l 114 (283)
T cd04727 52 ADPKMIKEIMDAV-----SIPVMAKVRIG-HFVEAQILEALGVDMI-----D-ESEVLTP-----ADEEHHIDKHKFKVP 114 (283)
T ss_pred CCHHHHHHHHHhC-----CCCeEEeeehh-HHHHHHHHHHcCCCEE-----e-ccCCCCc-----HHHHHHHHHHHcCCc
Confidence 5666666666544 78899877432 27777777777 8888 4 3333223 2444555444 4777
Q ss_pred EEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 368 VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 368 vivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
++. .. +.+.+.-+++..|+|+|=-+.|--.| +-.|+|+-+++|-.++.....
T Consensus 115 ~MA-----------D~---stleEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~~g 166 (283)
T cd04727 115 FVC-----------GA---RNLGEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKLQS 166 (283)
T ss_pred EEc-----------cC---CCHHHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHHhC
Confidence 663 11 23566789999999999988875566 678999999999998886543
No 158
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=73.63 E-value=62 Score=33.33 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=71.6
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCC-EEEE-cCCCcccCCCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD-GAMV-ARGDLGAELPIE 348 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sD-gImI-grGDLg~eig~~ 348 (570)
+-++.+.+.|+|++.++... .++..++.+.+++.|-+.-.+..=.| ..+.+..|++.+| .|++ ++...+ |..
T Consensus 106 ~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T---G~~ 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT---GAR 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC---CCc
Confidence 34566678899999999763 46677777888777766443333333 4678999999988 4443 332111 111
Q ss_pred -CHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 349 -DVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 349 -~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.+..-....++..++ .++|+++- ...-+. .++..+...|+|+++..
T Consensus 180 ~~~~~~~~~~i~~lr~~~~~pi~vg---------fGI~~~---e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 NRAASALNELVKRLKAYSAKPVLVG---------FGISKP---EQVKQAIDAGADGVIVG 227 (256)
T ss_pred ccCChhHHHHHHHHHhhcCCCEEEe---------CCCCCH---HHHHHHHHcCCCEEEEC
Confidence 122223444445444 37787753 223222 25667889999998874
No 159
>PRK12483 threonine dehydratase; Reviewed
Probab=73.23 E-value=55 Score=37.36 Aligned_cols=155 Identities=12% Similarity=0.113 Sum_probs=93.5
Q ss_pred ceEEEeecCcchhhhHHH---------HHHh--CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhh
Q 008319 309 IHVIVKIESADSIPNLHS---------IISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES 377 (570)
Q Consensus 309 i~IiaKIEt~~gv~Nlde---------Il~~--sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeS 377 (570)
..|+.|.|+.+-.-.+.+ +.+. ..||+-+ +-| ..=.-+...|+..|.|+.+.
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG-----Nha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG-----NHAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC-----HHHHHHHHHHHHhCCCEEEE------
Confidence 369999999876643332 1111 3354433 112 12234566899999999874
Q ss_pred hhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHH
Q 008319 378 MIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFH 457 (570)
Q Consensus 378 M~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~ 457 (570)
.|..+....+...-..|++.++. |...-++++...+++++- ...+..+ |.+ ......-..-
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e~-g~~~v~p-fdd------~~viaGqgTi 175 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEEE-GLTFVPP-FDD------PDVIAGQGTV 175 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHhc-CCeeeCC-CCC------hHHHHHHHHH
Confidence 23333344566778899987764 344568888777776542 2222221 111 1112222333
Q ss_pred HHHHHhhcC--C-cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCHH
Q 008319 458 STTMANTLN--T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQER 499 (570)
Q Consensus 458 av~~a~~~~--a-~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~~ 499 (570)
+.++.++++ . .||+..-+|.++--++++ +|.+.||+|-+...
T Consensus 176 g~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 176 AMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred HHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 567777775 4 899999999987777654 89999999998644
No 160
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=73.19 E-value=70 Score=35.52 Aligned_cols=124 Identities=18% Similarity=0.118 Sum_probs=69.0
Q ss_pred hHHHhhhhhhcCCcEEEecC-CCChhHHHHHHHH-H--HhcC---CCceEEEeecCcchh--------------------
Q 008319 269 DWEDIKFGVDNQVDFYAVSF-VKDAKVVHELKDY-L--KSCN---ADIHVIVKIESADSI-------------------- 321 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~Sf-V~sa~dv~~vr~~-l--~~~~---~~i~IiaKIEt~~gv-------------------- 321 (570)
+.+.++..++.|++.|..|. ..-...+...+.. + ...+ ....|++|+-+++-.
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 34557788899999987774 3322222222221 0 0000 114599998765333
Q ss_pred hhHHHHHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc--------CCCEEEEccchhhhhcCCCcChHH
Q 008319 322 PNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAE 388 (570)
Q Consensus 322 ~NldeIl~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~--------gKPvivaTqmLeSM~~~~~PtrAE 388 (570)
.+.+|-..+ +|.|.+. .|=|-+.+-.......-.|.+...+. ..|||.|- ..-|
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAG---------GI~t--- 230 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAG---------GIGT--- 230 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEEC---------CCCC---
Confidence 122332222 5888888 77766665432333333344433222 48888763 3323
Q ss_pred HhHHHHHHHhCccEEEe
Q 008319 389 VSDIAIAVREGADAVML 405 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmL 405 (570)
-.+++.|+..|+|+|.+
T Consensus 231 g~~vaAA~alGAd~V~~ 247 (418)
T cd04742 231 PEAAAAAFALGADFIVT 247 (418)
T ss_pred HHHHHHHHHcCCcEEee
Confidence 34688999999999986
No 161
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=72.99 E-value=20 Score=37.56 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=56.6
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeec--CcchhhhHHHHHHh-CCEEEEcCCC
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISA-SDGAMVARGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIE--t~~gv~NldeIl~~-sDgImIgrGD 340 (570)
+.++|.++.|+|+|++. .....|..+-++...+..+.++.+|+-+- |.++++.....-+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 45578889999998763 22333333344455566677788888773 22333333333333 8999998765
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 341 Lg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
+.. ..-+.+.. ..-..|.+.+.|+++.
T Consensus 112 y~~-~~~~~i~~---~f~~va~~~~lpi~lY 138 (303)
T PRK03620 112 LTE-APQEGLAA---HVEAVCKSTDLGVIVY 138 (303)
T ss_pred CCC-CCHHHHHH---HHHHHHHhCCCCEEEE
Confidence 431 12123333 3334455668999975
No 162
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=72.96 E-value=77 Score=32.34 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=67.6
Q ss_pred CChhhHHHhhhhhhcCCcEEEecC----------------CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHH
Q 008319 265 ITDKDWEDIKFGVDNQVDFYAVSF----------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII 328 (570)
Q Consensus 265 lt~kD~~dI~~~~~~gvd~I~~Sf----------------V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl 328 (570)
-|..+...+..-+..++|+|=+.+ .++++.+.++-+.+.. .+++|.+||=--.--.+..+++
T Consensus 77 ~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~~~~a 154 (231)
T TIGR00736 77 VDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDELIDA 154 (231)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchHHHHH
Confidence 355566555444566788876653 2345544444444442 3678999994311111223443
Q ss_pred Hh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCcc
Q 008319 329 SA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-Q-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 401 (570)
Q Consensus 329 ~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~-g-KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D 401 (570)
+. +|+|.|..+. +.-+.+.-+.|+..+++ + +|+|- .+..-+. .|+..++..|+|
T Consensus 155 ~~l~~aGad~i~Vd~~~-------~g~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s~---eda~e~l~~GAd 215 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMY-------PGKPYADMDLLKILSEEFNDKIIIG---------NNSIDDI---ESAKEMLKAGAD 215 (231)
T ss_pred HHHHHcCCCEEEEeeCC-------CCCchhhHHHHHHHHHhcCCCcEEE---------ECCcCCH---HHHHHHHHhCCC
Confidence 33 8999884221 11122334445555544 3 88773 5555554 456666778999
Q ss_pred EEEecc
Q 008319 402 AVMLSG 407 (570)
Q Consensus 402 ~vmLs~ 407 (570)
+||+.-
T Consensus 216 ~VmvgR 221 (231)
T TIGR00736 216 FVSVAR 221 (231)
T ss_pred eEEEcH
Confidence 999853
No 163
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=72.95 E-value=98 Score=31.48 Aligned_cols=133 Identities=11% Similarity=0.151 Sum_probs=84.0
Q ss_pred HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCC---
Q 008319 272 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE--- 348 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~--- 348 (570)
-+..-.+.|+|+|.+= ++...++.++-+++++.|....+.-+=+|+ ++.++.++..+|.|++ ++++=|+-
T Consensus 76 ~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGfgGQ~ 148 (220)
T COG0036 76 YIEAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGFGGQK 148 (220)
T ss_pred HHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCCcccc
Confidence 3444458899998665 467778888889999999999999998996 7799999999999999 67776661
Q ss_pred CHHHHHHHHHHH---HHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC--HHHHHHHHH
Q 008319 349 DVPLLQEDIIRR---CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF--PLKAVKVMH 423 (570)
Q Consensus 349 ~v~~~qk~Ii~~---c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y--P~eaV~~m~ 423 (570)
-++...++|-+. ..+.| ++.+- +.... + ..-+..+...|+|.++.-+ ++-+- -.+.++.++
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~-~~~Ie-------VDGGI-~---~~t~~~~~~AGad~~VaGS--alF~~~d~~~~i~~~~ 214 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERL-DILIE-------VDGGI-N---LETIKQLAAAGADVFVAGS--ALFGADDYKATIRELR 214 (220)
T ss_pred cCHHHHHHHHHHHHHhcccC-CeEEE-------EeCCc-C---HHHHHHHHHcCCCEEEEEE--EEeCCccHHHHHHHHH
Confidence 122333322222 11123 44331 22221 1 1224455678999988754 43333 355555555
Q ss_pred HH
Q 008319 424 TV 425 (570)
Q Consensus 424 ~I 425 (570)
..
T Consensus 215 ~~ 216 (220)
T COG0036 215 GE 216 (220)
T ss_pred HH
Confidence 44
No 164
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=72.88 E-value=42 Score=33.56 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=67.1
Q ss_pred ChhhHHHh-hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCccc
Q 008319 266 TDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (570)
Q Consensus 266 t~kD~~dI-~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~ 343 (570)
+..+...+ +-.++.|++.+-++| +++.-...+++.-++. .++.|-| =|..-.+..+..++. ++-| |.|+
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~-~~~~vGA--GTVl~~~~a~~a~~aGA~Fi-vsP~---- 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTL-RTPVALDAIRLLRKEV-PDALIGA--GTVLNPEQLRQAVDAGAQFI-VSPG---- 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC-CCccHHHHHHHHHHHC-CCCEEEE--EeCCCHHHHHHHHHcCCCEE-ECCC----
Confidence 33443333 445678899888887 6666665565554433 3444433 233333444555555 5555 3443
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.-..+++.|+++|.|++- --.-.+++..|...|+|.+=+-
T Consensus 89 ---------~~~~v~~~~~~~~i~~iP--------------G~~TptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 89 ---------LTPELAKHAQDHGIPIIP--------------GVATPSEIMLALELGITALKLF 128 (204)
T ss_pred ---------CCHHHHHHHHHcCCcEEC--------------CCCCHHHHHHHHHCCCCEEEEC
Confidence 234899999999999882 2222446889999999999884
No 165
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=72.37 E-value=9.2 Score=36.74 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHhcCCC-CeEEEEeCC
Q 008319 451 GDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPS-STIFAFTNQ 497 (570)
Q Consensus 451 ~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~~RP~-~pIiavt~~ 497 (570)
.+..-..|++-|.+++. .|+|.+.||.||++++-+-|. ..|+.||+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh 60 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHH 60 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEee
Confidence 45566778889999999 899999999999999999998 899999975
No 166
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=72.34 E-value=67 Score=33.03 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCChhhH-HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh----------hhHHHHHHh-
Q 008319 263 PSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI----------PNLHSIISA- 330 (570)
Q Consensus 263 p~lt~kD~-~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv----------~NldeIl~~- 330 (570)
|.-+..|. +-+..+++.|+|.|+++. ..+...+..+ +.++.++.+|++..++ ...++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 44455665 455778899999999882 3333333333 3457788988854433 235666665
Q ss_pred CCEEEEc--CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccc----hhhhhcCCCcChHHHhH-HHHHHHhCccEE
Q 008319 331 SDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM----LESMIDHPTPTRAEVSD-IAIAVREGADAV 403 (570)
Q Consensus 331 sDgImIg--rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqm----LeSM~~~~~PtrAEv~D-v~nav~~G~D~v 403 (570)
+|.+.+- -|++. ..++....+++.+.|++.|.|+++-..- +|. . -+..++.. ..-+...|+|.+
T Consensus 107 ad~v~~~~~~g~~~----~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~----~-~~~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 107 ADAVSVHVNVGSET----EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKN----E-YDPEVVAHAARVAAELGADIV 177 (267)
T ss_pred CCEEEEEEecCChh----HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCC----C-ccHHHHHHHHHHHHHHCCCEE
Confidence 7755542 12211 2346666778999999999999873100 111 1 12223222 244567899998
Q ss_pred EecccccCCCCHHHHHHHHHHHHH
Q 008319 404 MLSGETAHGKFPLKAVKVMHTVAL 427 (570)
Q Consensus 404 mLs~ETA~G~yP~eaV~~m~~I~~ 427 (570)
=.+ |+- -++.|++++.
T Consensus 178 Kt~-------~~~-~~~~l~~~~~ 193 (267)
T PRK07226 178 KTN-------YTG-DPESFREVVE 193 (267)
T ss_pred eeC-------CCC-CHHHHHHHHH
Confidence 554 221 2466666654
No 167
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=72.15 E-value=73 Score=31.12 Aligned_cols=131 Identities=17% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHhhhhhhcCCcEEEe-----cCCCC----hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCC
Q 008319 271 EDIKFGVDNQVDFYAV-----SFVKD----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~-----SfV~s----a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGD 340 (570)
+.++.+.+.|+|+|.+ +|+.+ .+.++++++.. .....+-.++-. ..+.++.+.+. +||+.+--+
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~- 93 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE- 93 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec-
Confidence 5667788999999999 88754 33444444332 212212234433 33456666655 899776311
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc--cccC-CCCHHH
Q 008319 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLK 417 (570)
Q Consensus 341 Lg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ETA~-G~yP~e 417 (570)
.. ......++.+++.|..+++++ ++. |..| ....+..++|.+++.+ .|.. ..++..
T Consensus 94 ------~~---~~~~~~~~~~~~~~~~~g~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 94 ------AS---EHIHRLLQLIKSAGIKAGLVL--------NPA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred ------cc---hhHHHHHHHHHHcCCEEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 11 233556889999999888752 121 2222 2344556688766532 2222 344556
Q ss_pred HHHHHHHHHHH
Q 008319 418 AVKVMHTVALR 428 (570)
Q Consensus 418 aV~~m~~I~~~ 428 (570)
.++.++++...
T Consensus 153 ~~~~i~~~~~~ 163 (220)
T PRK05581 153 VLEKIRELRKL 163 (220)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 168
>PRK09389 (R)-citramalate synthase; Provisional
Probab=72.13 E-value=1.8e+02 Score=32.94 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=96.6
Q ss_pred CChhhHHHhh-hhhhcCCcEEEec-CCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCE--EEEcCC
Q 008319 265 ITDKDWEDIK-FGVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDG--AMVARG 339 (570)
Q Consensus 265 lt~kD~~dI~-~~~~~gvd~I~~S-fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDg--ImIgrG 339 (570)
+|..++..|. .-.+.|+|.|=+. ++.+..|...++...+ .+.+..+.+..-.. .+.++..++. .|. ++++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 4667776554 4457899999665 4567788877776554 34566777766543 2345555544 554 344444
Q ss_pred CcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH-HHhCccEEEecccccCCCC
Q 008319 340 DLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGKF 414 (570)
Q Consensus 340 DLg~e----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETA~G~y 414 (570)
|+-.+ +..+++.....+.++.|++.|..|.+.- ......+..-+.+++.+ ...|+|.+.|. +|.=.-.
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~ 170 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------EDASRADLDFLKELYKAGIEAGADRICFC-DTVGILT 170 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------eeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcC
Confidence 43221 1224555566678889999998877642 23333334445555544 45699999995 8888889
Q ss_pred HHHHHHHHHHHHHH
Q 008319 415 PLKAVKVMHTVALR 428 (570)
Q Consensus 415 P~eaV~~m~~I~~~ 428 (570)
|.+.-+.+..+...
T Consensus 171 P~~~~~lv~~l~~~ 184 (488)
T PRK09389 171 PEKTYELFKRLSEL 184 (488)
T ss_pred HHHHHHHHHHHHhh
Confidence 99998887777544
No 169
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=71.90 E-value=1.9e+02 Score=33.12 Aligned_cols=171 Identities=15% Similarity=0.127 Sum_probs=103.6
Q ss_pred CcccccCCCccCCCCCChhhHHHhhhh-hhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeec-Ccchh--h--
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIE-SADSI--P-- 322 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~~-~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIE-t~~gv--~-- 322 (570)
|.|-.-|+.. +|..++..|... .+.|+|.|=+.| .-++.|...++...+..-.+..|.+..= ....+ +
T Consensus 10 RDG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d 84 (526)
T TIGR00977 10 RDGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEED 84 (526)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchH
Confidence 4444555544 566787666544 478999996654 3478888888876643223455665542 22222 2
Q ss_pred -hHHHHHHh-CCEE--EEcCCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEE-EccchhhhhcCCCcChHHHhHHH
Q 008319 323 -NLHSIISA-SDGA--MVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIV-ATNMLESMIDHPTPTRAEVSDIA 393 (570)
Q Consensus 323 -NldeIl~~-sDgI--mIgrGDLg~e----ig~~~v~~~qk~Ii~~c~~~gKPviv-aTqmLeSM~~~~~PtrAEv~Dv~ 393 (570)
.++..+.. .+.| ++.--|+-.+ +..+++.....+.++.++.+|..|.+ ++...+.. .-+...+.+++
T Consensus 85 ~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~ 160 (526)
T TIGR00977 85 KMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATL 160 (526)
T ss_pred HHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHH
Confidence 24444443 4533 3333333222 22356667778889999999998854 43332211 11223355555
Q ss_pred HH-HHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 394 IA-VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 394 na-v~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
.+ ...|+|.+.|. +|.=+..|.+.-+.+..+.+...
T Consensus 161 ~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 161 ATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhCC
Confidence 44 55699999997 88888999999999999986654
No 170
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=71.62 E-value=70 Score=34.35 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
.++..+++++.++.| +..++ |+=..+.+|.+.+. +|.+-||-+|+.. -.+++.+.+.|||+|+
T Consensus 75 ~e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 75 EEDHRELKEYCESKG--IEFLS---TPFDLESADFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVIL 138 (329)
T ss_pred HHHHHHHHHHHHHhC--CcEEE---EeCCHHHHHHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEEE
Confidence 345556666665443 44555 33444455555566 8999999888853 2356777889999999
Q ss_pred EccchhhhhcCCCcChHHHhHHHHHHH-hCcc---EEEecccc
Q 008319 371 ATNMLESMIDHPTPTRAEVSDIAIAVR-EGAD---AVMLSGET 409 (570)
Q Consensus 371 aTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D---~vmLs~ET 409 (570)
.|.| .|.+|+...+.++. .|.+ .++|--.+
T Consensus 139 StGm---------atl~Ei~~Av~~i~~~G~~~~~i~llhC~s 172 (329)
T TIGR03569 139 STGM---------ATLEEIEAAVGVLRDAGTPDSNITLLHCTT 172 (329)
T ss_pred ECCC---------CCHHHHHHHHHHHHHcCCCcCcEEEEEECC
Confidence 8764 36788888888887 4554 55554333
No 171
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=71.56 E-value=28 Score=36.38 Aligned_cols=114 Identities=16% Similarity=0.299 Sum_probs=70.5
Q ss_pred hhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHH
Q 008319 276 GVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQE 355 (570)
Q Consensus 276 ~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk 355 (570)
++..|+|..-+ |.+. +...-++.|. .+..+-.-.-...+++-++..+.-.++++|||| ||-+ +.+....+
T Consensus 53 a~~~GaDL~Hi-FCe~-~Aa~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i~ 122 (306)
T KOG3974|consen 53 ALRVGADLSHI-FCEP-EAAVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEIA 122 (306)
T ss_pred HHHhccceeee-eech-hHHHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHHH
Confidence 44568884322 2222 1122345554 444444444445588888888888999999997 5442 45667778
Q ss_pred HHHHHHHHcCCCEEE-------EccchhhhhcC-----CCcChHHHhHHHHHHHhC
Q 008319 356 DIIRRCRSMQKPVIV-------ATNMLESMIDH-----PTPTRAEVSDIAIAVREG 399 (570)
Q Consensus 356 ~Ii~~c~~~gKPviv-------aTqmLeSM~~~-----~~PtrAEv~Dv~nav~~G 399 (570)
+|++-++..++|+.+ .+|-.|-|... .+|.--|...++.++.+.
T Consensus 123 ~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l~~ 178 (306)
T KOG3974|consen 123 KILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAELDK 178 (306)
T ss_pred HHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhhcc
Confidence 999999999999754 35555544332 256666766666665533
No 172
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=71.52 E-value=62 Score=33.40 Aligned_cols=119 Identities=9% Similarity=0.089 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
..+...|+..|.++++.. |...........-..|++.+...+ . .-++++...++..+-. .++
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~~-~~~ 139 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEEG-LTF 139 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhcC-CEE
Confidence 456778999999998751 211122335577888999887753 2 3466666666654422 222
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 498 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~ 498 (570)
..+ +.+. .....-...+.++..+++. .||+.+-||.|..-++++ .|...|+++.+..
T Consensus 140 ~~~-~~n~------~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~ 202 (304)
T cd01562 140 IHP-FDDP------DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202 (304)
T ss_pred eCC-CCCc------chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 111 1111 1112223345677777754 788899999988777655 7889999999953
No 173
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=71.26 E-value=95 Score=33.03 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc---cccCCCCHHHHHHHHHHHHHHhhcC
Q 008319 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG---ETAHGKFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 365 gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~---ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (570)
..|+|.+.-+- ...|+..++..|+|++++.. ..... =+-.+++++..+..+....
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~ 312 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTA 312 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 68888653322 24689999999999999974 11222 3445556777776666643
No 174
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=71.19 E-value=25 Score=36.07 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred HHhhhhhhcCCcEEEecC------CCChhHH-HHHHHHHHhcCCCceEEEeecC---cchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVSF------VKDAKVV-HELKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~Sf------V~sa~dv-~~vr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.+++.++.|+|+|.+.= .-+.++- +-++...+..+.++.||+.+=+ .++++.....-+. +|++|+.+-
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 556788899999987541 1222333 3334444555667899998843 2333333333333 899999876
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+.. .+-+.+...-+.|.+ +.+.|+++.
T Consensus 102 ~y~~-~~~~~~~~~~~~ia~---~~~~pi~iY 129 (281)
T cd00408 102 YYNK-PSQEGIVAHFKAVAD---ASDLPVILY 129 (281)
T ss_pred cCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5433 222344444444444 468999974
No 175
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.79 E-value=83 Score=31.57 Aligned_cols=100 Identities=14% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhC-C--EEEEcCCCcccCCCCCC-------------HHH
Q 008319 289 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS-D--GAMVARGDLGAELPIED-------------VPL 352 (570)
Q Consensus 289 V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~s-D--gImIgrGDLg~eig~~~-------------v~~ 352 (570)
..++++...+-+.|-+.|-+..=| -.-|+.+++.|.++.+.. | .++||-|=. +..+. -|.
T Consensus 21 ~~~~~~a~~~~~al~~~Gi~~iEi-t~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV---~~~~~~~~a~~aGA~FivsP~ 96 (213)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEV-TYTNPFASEVIKELVELYKDDPEVLIGAGTV---LDAVTARLAILAGAQFIVSPS 96 (213)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE-ECCCccHHHHHHHHHHHcCCCCCeEEeeeeC---CCHHHHHHHHHcCCCEEECCC
Confidence 345555555555555444332211 223556666666665543 1 355553321 11111 123
Q ss_pred HHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 353 ~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
....+++.|++.|.|++ |.-.-.+++..+...|+|.+-+-
T Consensus 97 ~~~~v~~~~~~~~i~~i--------------PG~~T~~E~~~A~~~Gad~vklF 136 (213)
T PRK06552 97 FNRETAKICNLYQIPYL--------------PGCMTVTEIVTALEAGSEIVKLF 136 (213)
T ss_pred CCHHHHHHHHHcCCCEE--------------CCcCCHHHHHHHHHcCCCEEEEC
Confidence 44789999999999988 22223455778899999999983
No 176
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.65 E-value=23 Score=36.65 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=56.9
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.+.+.++.|+|+|++. +....|..+-++...+..+.++.|++-+- +.++++.....-+. +|++|+.+-
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45577889999998764 22333333344445555566788999883 33444444444334 899999864
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
... ..+-+.+...-+.| |.+.+.|+++.
T Consensus 103 ~y~-~~~~~~i~~~~~~i---~~~~~~pi~lY 130 (285)
T TIGR00674 103 YYN-KPTQEGLYQHFKAI---AEEVDLPIILY 130 (285)
T ss_pred cCC-CCCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 432 11213344444444 44568999874
No 177
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=70.43 E-value=58 Score=34.11 Aligned_cols=117 Identities=20% Similarity=0.269 Sum_probs=76.9
Q ss_pred ceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccch---hhhhcCCCc
Q 008319 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML---ESMIDHPTP 384 (570)
Q Consensus 309 i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmL---eSM~~~~~P 384 (570)
++++.......-++.+.+-+.. .+.||+-.-+| ++++....-+++++.|++.|.+|-..-..+ |.+.....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7899999877666666666665 78999975554 667788888999999999998765332221 111111000
Q ss_pred ChHHHhHHHHHHH-hCccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 385 TRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 385 trAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
+--...+...++. .|+|.+-.+--|..|.| |.--++.+.+|+...
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~ 199 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT 199 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh
Confidence 0112344567775 79999998878888877 444466666666554
No 178
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.03 E-value=91 Score=31.31 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 354 QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 354 qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
-..+++.|++++.|.+ |.-.-.+++..+...|+|.+=|
T Consensus 97 ~~~vi~~a~~~~i~~i--------------PG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 97 TPPLLKAAQEGPIPLI--------------PGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEE
Confidence 3588999999999988 1111223477899999999988
No 179
>TIGR03586 PseI pseudaminic acid synthase.
Probab=69.95 E-value=83 Score=33.79 Aligned_cols=91 Identities=22% Similarity=0.265 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 293 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 293 ~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
++..++.+|.++.| +..++ |+-..+.+|.+.+. +|.+-||-+|+.. + .+++.+.+.||||++.
T Consensus 77 e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KI~S~~~~n------~-----~LL~~va~~gkPvils 140 (327)
T TIGR03586 77 EWHKELFERAKELG--LTIFS---SPFDETAVDFLESLDVPAYKIASFEITD------L-----PLIRYVAKTGKPIIMS 140 (327)
T ss_pred HHHHHHHHHHHHhC--CcEEE---ccCCHHHHHHHHHcCCCEEEECCccccC------H-----HHHHHHHhcCCcEEEE
Confidence 33444555544432 33444 33333444555555 7899999888843 2 3456677889999997
Q ss_pred ccchhhhhcCCCcChHHHhHHHHHHH-hCc-cEEEeccc
Q 008319 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGA-DAVMLSGE 408 (570)
Q Consensus 372 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~-D~vmLs~E 408 (570)
|.| .|..|+...+..+. .|. +.++|-..
T Consensus 141 tG~---------~t~~Ei~~Av~~i~~~g~~~i~LlhC~ 170 (327)
T TIGR03586 141 TGI---------ATLEEIQEAVEACREAGCKDLVLLKCT 170 (327)
T ss_pred CCC---------CCHHHHHHHHHHHHHCCCCcEEEEecC
Confidence 664 46788888888886 566 55555543
No 180
>PRK07334 threonine dehydratase; Provisional
Probab=69.88 E-value=75 Score=34.69 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+++. .|..+.-......-..|++.++.. ...-++++...+++.+.. .++.
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~~-~~~~ 146 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEEG-LTFV 146 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEec
Confidence 4567899999999874 122222234556778999998752 345667777777655422 2221
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~ 498 (570)
.+ |.+. ...+.-..-+.++.++++. .+|+..-+|.++--++++ +|...|+++-+..
T Consensus 147 ~~-~~~~------~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 147 HP-YDDP------AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred CC-CCCH------HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 1110 1122223345567777754 788888899887666654 8999999999964
No 181
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=69.39 E-value=1.2e+02 Score=31.17 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=74.7
Q ss_pred HhhhhhhcCCcEEEecCC-CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCC
Q 008319 272 DIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 272 dI~~~~~~gvd~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~ 349 (570)
.+..+...|+|+|.+--- .+.+++.++-++..+.| ..+++-+-|.+ .++...+. +|.|-+..-||... .. +
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~---E~~~A~~~gadiIgin~rdl~~~-~~-d 197 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEE---ELERALKLGAPLIGINNRNLKTF-EV-D 197 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHH---HHHHHHHcCCCEEEECCCCcccc-cC-C
Confidence 477788999999866522 24556666666665544 33444443433 23333333 88888887777543 21 2
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (570)
+..-.+++.... ...|++. .+..-|. .|+..+...|+|++++.+.-..-..|.++++.+
T Consensus 198 -~~~~~~l~~~~p-~~~~vIa---------egGI~t~---ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 198 -LETTERLAPLIP-SDRLVVS---------ESGIFTP---EDLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred -HHHHHHHHHhCC-CCCEEEE---------EeCCCCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 222233333221 1235552 3333333 356677888999999866655667888888754
No 182
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=68.35 E-value=28 Score=35.87 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=57.6
Q ss_pred HHhhhhhhcCCcEEEecC------CCChhHHHH-HHHHHHhcCCCceEEEeecC---cchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~Sf------V~sa~dv~~-vr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.+++.++.|+++|.+.- --+.++-.+ ++...+..+.++.|++-+-. .++++......+. +|++|+.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 556788899999987651 112222222 33334444567889988853 3455555555444 899999865
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
...- .+-+.+...-++|.+ +.+.|+++.
T Consensus 105 ~~~~-~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 105 YYNK-PSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 4421 122345555555555 468999975
No 183
>PLN02970 serine racemase
Probab=68.27 E-value=85 Score=33.26 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. . |..+....+.+.-..|++.+..-+ ...++.+...+++++ ...++.
T Consensus 89 alA~~a~~~G~~~~iv---------v--p~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~~~ 150 (328)
T PLN02970 89 ALALAAKLRGIPAYIV---------V--PKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAVLI 150 (328)
T ss_pred HHHHHHHHcCCCEEEE---------E--CCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCEEe
Confidence 4566899999999875 2 222222334466778999887642 234566666666543 222222
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~ 498 (570)
.+ |.+. ...+....-+.++.++++. .||+..-+|.++.-++++ .|...|+++-+..
T Consensus 151 ~~-~~n~------~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 151 HP-YNDG------RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred CC-CCCc------chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 21 1111 1112122335566677654 788899999998887766 8999999998864
No 184
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=68.22 E-value=84 Score=30.51 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCChhhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh-CCEEEEcC
Q 008319 264 SITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 264 ~lt~kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDgImIgr 338 (570)
..+.++...+..+++.|+|+|=+. +. ++.-...++++-+... +..+++ |+-++.. ..+++..+. +|.|.+--
T Consensus 8 ~~~~~~a~~~~~~l~~~v~~iev~~~l~-~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~-~~~~~~~~~Gad~i~vh~ 84 (206)
T TIGR03128 8 LLDIEEALELAEKVADYVDIIEIGTPLI-KNEGIEAVKEMKEAFP-DRKVLADLKTMDAGE-YEAEQAFAAGADIVTVLG 84 (206)
T ss_pred CCCHHHHHHHHHHcccCeeEEEeCCHHH-HHhCHHHHHHHHHHCC-CCEEEEEEeeccchH-HHHHHHHHcCCCEEEEec
Confidence 344556655655668899998773 31 2222333333322222 233443 3334332 145666665 88887641
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
+.+ ....+++++.|+++|++++++ ..++. | -..++..+...|+|.+-+..
T Consensus 85 -----~~~----~~~~~~~i~~~~~~g~~~~~~-------~~~~~-t--~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 85 -----VAD----DATIKGAVKAAKKHGKEVQVD-------LINVK-D--KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred -----cCC----HHHHHHHHHHHHHcCCEEEEE-------ecCCC-C--hHHHHHHHHHcCCCEEEEcC
Confidence 111 123478999999999999974 11221 1 12345566677999887743
No 185
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=67.89 E-value=1.1e+02 Score=31.48 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|++.|.|+.+. .|..+....+...-..|++.+...+... + ...++++...++.++-+..++.
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~ 133 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNAFWL 133 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCcEEe
Confidence 4566899999999875 2333333445667788999887753211 1 2356777766665442112211
Q ss_pred CCCCCCcccCCCCChhHHHH-HHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFA-FHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia-~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+ +.+ ....+.-. .-+.++.++++ . .||+.+-+|.++.-++ .+.|...|++|-+..
T Consensus 134 ~~-~~~------p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 134 NQ-FEN------PANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred cC-CCC------chHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 111 01112222 33567777776 3 7999999998875544 567999999999874
No 186
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=67.64 E-value=84 Score=33.19 Aligned_cols=114 Identities=18% Similarity=0.268 Sum_probs=76.1
Q ss_pred cCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-Hc
Q 008319 287 SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SM 364 (570)
Q Consensus 287 SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~-~~ 364 (570)
.=.+++++|+++++.+ +++||+|+--- =+...+.+.+. +|.| | ..+..-+ -...+...+ +.
T Consensus 51 ~R~~~p~~I~~I~~~V-----~iPVig~~kig-h~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f 113 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-----SIPVMAKVRIG-HFVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKF 113 (287)
T ss_pred eecCCHHHHHHHHHhC-----CCCEEEEeecc-HHHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHc
Confidence 3445677777766654 78899877421 15666666666 8888 4 3333222 133333333 34
Q ss_pred CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 008319 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 365 gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (570)
+.|+..- -..+.+.-+++..|+|+|--++|--.| +-+|||+-|+.+-.+....
T Consensus 114 ~vpfmad--------------~~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 114 KVPFVCG--------------ARDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCCEEcc--------------CCCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 7787641 123556788999999999999997777 6899999999998888754
No 187
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=67.56 E-value=47 Score=34.52 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=58.8
Q ss_pred HHhhhhhh-cCCcEEEecC------C-CChhHHHHHHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcC
Q 008319 271 EDIKFGVD-NQVDFYAVSF------V-KDAKVVHELKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 271 ~dI~~~~~-~gvd~I~~Sf------V-~sa~dv~~vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgr 338 (570)
+.+++.++ .|+++|++.= . ...|...-++..++..+.++.||+.+- |.++++.....-+. +|++++-+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55578888 9999986641 1 222223333445556667799999984 45555555555555 89999987
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+.- ..-+ .+.+..-+.|.+.+.|+++.
T Consensus 108 P~y~~-~~~~---~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 108 PFYYP-FSFE---EICDYYREIIDSADNPMIVY 136 (293)
T ss_pred CcCCC-CCHH---HHHHHHHHHHHhCCCCEEEE
Confidence 55421 1112 33334444455678999974
No 188
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=67.46 E-value=1.1e+02 Score=31.22 Aligned_cols=143 Identities=20% Similarity=0.237 Sum_probs=87.4
Q ss_pred CChhhH-HHhhhhhh-cCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh-----CCEEE
Q 008319 265 ITDKDW-EDIKFGVD-NQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-----SDGAM 335 (570)
Q Consensus 265 lt~kD~-~dI~~~~~-~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-----sDgIm 335 (570)
.+++++ +.|..+.+ +++|+|=+-+-...+++.++.++..+.| .|++ --|.--..+++.+++.. +|.+=
T Consensus 75 ~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivK 151 (231)
T COG0710 75 GSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVK 151 (231)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEE
Confidence 355555 44455555 4699998886655556666666655443 3333 12333344455555543 47666
Q ss_pred EcCCCcccCCCC--CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHH-hCccEEEecccccCC
Q 008319 336 VARGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 412 (570)
Q Consensus 336 IgrGDLg~eig~--~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G 412 (570)
|+ -|+- +++..+.+.....-. +++|+++- ||-....++| +++.+. --.-...+...||=|
T Consensus 152 iA------vm~~~~~DvL~ll~~~~~~~~-~~~p~i~i-----~MG~~G~~SR-----v~~~~~GS~~tya~~~~~sAPG 214 (231)
T COG0710 152 IA------VMPQSKEDVLDLLEATREFKE-AEKPVITI-----SMGKTGKISR-----VAGPVFGSPITYASLDKPSAPG 214 (231)
T ss_pred EE------ecCCCHHHHHHHHHHHHhccc-cCCCEEEE-----ecCCCCchhh-----hhHhhhCCceeEeecCCCCCCC
Confidence 64 2332 345544444433333 89999875 8988888888 555555 223344577789999
Q ss_pred CCHHHHHHHHHHHHH
Q 008319 413 KFPLKAVKVMHTVAL 427 (570)
Q Consensus 413 ~yP~eaV~~m~~I~~ 427 (570)
..+++.++.+..+..
T Consensus 215 Qi~v~~l~~~~~~l~ 229 (231)
T COG0710 215 QISVDELRKILTLLG 229 (231)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999988877653
No 189
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.35 E-value=1.5e+02 Score=30.20 Aligned_cols=215 Identities=14% Similarity=0.089 Sum_probs=114.8
Q ss_pred CCChhhHHHhh-hhhhcCCcEEEecCCCC-hhHHHHHHHHHHhcCCCceEEEee-cCcchhhhHHHHHHh-CCEEEEc--
Q 008319 264 SITDKDWEDIK-FGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAMVA-- 337 (570)
Q Consensus 264 ~lt~kD~~dI~-~~~~~gvd~I~~SfV~s-a~dv~~vr~~l~~~~~~i~IiaKI-Et~~gv~NldeIl~~-sDgImIg-- 337 (570)
.+|..++..|. .-.+.|+|.|=+.|-.. ..+...++.+. +.+.+..+.+-. -+.++ ++...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~---v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKED---IEAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHH---HHHHHhCCcCEEEEEEe
Confidence 45667775554 44578999987755433 33334444443 333445555442 22333 3333433 5654442
Q ss_pred CCCc----ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH-HHhCccEEEecccccCC
Q 008319 338 RGDL----GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHG 412 (570)
Q Consensus 338 rGDL----g~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETA~G 412 (570)
-.|. -.....++.....+.+++.|++.|..+.+.. .....-+..++.+.+.. ...|+|.+.|. +|.=.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCC
Confidence 1111 0011123344556789999999999876532 23333445566666544 56799999995 88888
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCCcEEEEcCChHHHHHHHhcCCCCeEE
Q 008319 413 KFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIF 492 (570)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~RP~~pIi 492 (570)
-+|.+.-+.+..+.+.....+.. +. -++..- |.+-...|-+.++-+|=.|-.|--- | -
T Consensus 165 ~~P~~v~~lv~~l~~~~~~~l~~--H~-------Hn~~Gl--a~An~laAi~aG~~~vd~s~~G~G~------~-----a 222 (259)
T cd07939 165 LDPFTTYELIRRLRAATDLPLEF--HA-------HNDLGL--ATANTLAAVRAGATHVSVTVNGLGE------R-----A 222 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEE--Ee-------cCCCCh--HHHHHHHHHHhCCCEEEEecccccc------c-----c
Confidence 89999888888887654311111 11 122222 2223344445566544455554431 1 1
Q ss_pred EEeCCHHHHHHhccccCcE
Q 008319 493 AFTNQERIKQRLVLYQGVM 511 (570)
Q Consensus 493 avt~~~~taRrL~L~rGV~ 511 (570)
+-++.+.++..|.-.+|+.
T Consensus 223 GN~~tE~lv~~l~~~~g~~ 241 (259)
T cd07939 223 GNAALEEVVMALKHLYGRD 241 (259)
T ss_pred cCcCHHHHHHHHHHhcCCC
Confidence 2245566666666555664
No 190
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=67.23 E-value=1.3e+02 Score=33.36 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=104.1
Q ss_pred CcccccCCCccCCCCCChhhHHHhhhhh-hcCCcEEEecCCCChhHHHHHHHHHH-hcCCCceEEEeecCc-chhh-hHH
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKFGV-DNQVDFYAVSFVKDAKVVHELKDYLK-SCNADIHVIVKIESA-DSIP-NLH 325 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~~~-~~gvd~I~~SfV~sa~dv~~vr~~l~-~~~~~i~IiaKIEt~-~gv~-Nld 325 (570)
|.|-.-|+.. +|.+|+..|...+ +.|+|+|=+.|-.+.+...+..+.+. ..+. .+.+++-.. ..++ .++
T Consensus 11 RDG~Q~~g~~-----~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~e 83 (409)
T COG0119 11 RDGEQAPGVS-----FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIE 83 (409)
T ss_pred CcCCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHH
Confidence 3444455554 5678887777665 58999997776654444444334443 2222 223333221 1222 455
Q ss_pred HHHHh-CC--EEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHh
Q 008319 326 SIISA-SD--GAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (570)
Q Consensus 326 eIl~~-sD--gImIgrGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (570)
.++.. .| .++++-.|+-+...+ +++...-+..++.++.+|.++... +|... .-+..-+.+++.++..
T Consensus 84 a~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 84 ALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHHH
Confidence 55555 66 488888887766654 567777789999999999887752 12211 2222225556655554
Q ss_pred -CccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 399 -GADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 399 -G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
|++.+-| .+|-=+-.|-+.-..+..+....-
T Consensus 158 ~ga~~i~l-~DTvG~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 158 AGADRINL-PDTVGVATPNEVADIIEALKANVP 189 (409)
T ss_pred cCCcEEEE-CCCcCccCHHHHHHHHHHHHHhCC
Confidence 4999999 588878889999888888887664
No 191
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=67.15 E-value=49 Score=35.83 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=41.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q 008319 102 KIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (570)
Q Consensus 102 KIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 155 (570)
++..-..|...-.+.+++++++|+..+-+..-+.+..+..+..+.+++.-+.++
T Consensus 148 ~LylIT~~~~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~ 201 (347)
T PRK02615 148 RLYLITSPSENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYG 201 (347)
T ss_pred CEEEEECCchhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 344444553223567999999999999999999988888888888888776654
No 192
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=67.08 E-value=53 Score=37.44 Aligned_cols=214 Identities=14% Similarity=0.163 Sum_probs=121.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHH-HHHHHHHHHhhcCCCcEEEEeecCCCeeeecc
Q 008319 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQK-TIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGD 174 (570)
Q Consensus 96 ~~~r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~-~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~ 174 (570)
...|+.|| +||+ .+..++..-+.+++.++-..|--..-..|.+ .++--|+...-. -|.
T Consensus 92 l~~Rg~eI---tgp~-~d~~~i~naln~~a~~~m~DfEDS~ap~w~~~~v~g~~N~~~~~-----------------~G~ 150 (545)
T COG2225 92 LIDRGVEI---TGPA-VDRKMVINALNEGAKTTMMDFEDSVAPVWAKDKVLGQRNLLGLM-----------------RGE 150 (545)
T ss_pred hhcCCcee---eecc-ccHHHHHHHhccccceEeeccccccccccccchhhhhhhHHHHh-----------------ccc
Confidence 45899999 5786 5788999999999999999987743333333 333222221111 123
Q ss_pred CCCceeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcccc
Q 008319 175 VPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (570)
Q Consensus 175 ~~~~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn 254 (570)
+..+ .-+.|..+++..+... .=...|-+-|.+-..+.|.
T Consensus 151 l~~~-~~k~GK~y~~~~n~dr----------------------------------------~~~L~vR~~G~hm~e~~i~ 189 (545)
T COG2225 151 LSAA-NQKAGKQYKLKLNPDR----------------------------------------RSLLFVRNRGLHMTEPHIT 189 (545)
T ss_pred cccc-cccccceeecccCccc----------------------------------------cceeEEeccccccccceEE
Confidence 3211 1245666555433110 0112233445555555554
Q ss_pred cCCCccC-----CCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhc----C---CCceEEEeecCcchhh
Q 008319 255 VRGKSAN-----LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC----N---ADIHVIVKIESADSIP 322 (570)
Q Consensus 255 ~p~~~~~-----lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~----~---~~i~IiaKIEt~~gv~ 322 (570)
+-|..++ .-..+-.-..++.. ..|=-|+.+|+.++++++.-.-+.+... | ..+++-.+||+..+.-
T Consensus 190 ~DG~~vp~~i~d~~l~~~~n~~~l~~--rg~g~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~ 267 (545)
T COG2225 190 VDGEEVPEGIFDFVLYGLHNAHDLLA--RGGGPYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATL 267 (545)
T ss_pred ecCccCcHHHHHHHHHHHHhhhhhhh--ccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhh
Confidence 4444322 10000111111111 2233578899999999987665544322 2 3478999999999999
Q ss_pred hHHHHHHh----CCEEEEcCCCcccC--------CCC----------CCHHHHHHHHHHHHHHcCCCEEEEcc
Q 008319 323 NLHSIISA----SDGAMVARGDLGAE--------LPI----------EDVPLLQEDIIRRCRSMQKPVIVATN 373 (570)
Q Consensus 323 NldeIl~~----sDgImIgrGDLg~e--------ig~----------~~v~~~qk~Ii~~c~~~gKPvivaTq 373 (570)
|+++|+.. +=|+=-||=|..-+ -++ +-+-+.++..+..|+++|-+.+--.|
T Consensus 268 ~m~eii~~~rer~v~lN~GrwDyigs~Ik~~~~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Ggma 340 (545)
T COG2225 268 NLDEILYALRDRVVGLNTGRWDYIGSEIKTLMEDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGGMA 340 (545)
T ss_pred hHHHHHHHHHhhhccccccchhhhhhHHHHhhhhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcccccch
Confidence 99999987 33555556442211 111 24678889999999999995543333
No 193
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=67.03 E-value=1.6e+02 Score=30.40 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=91.7
Q ss_pred cCcccccCCCccCCCCCChhhHHHh-hhhhhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEe-ecCcchhhhHH
Q 008319 249 SRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLH 325 (570)
Q Consensus 249 s~KgIn~p~~~~~lp~lt~kD~~dI-~~~~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaK-IEt~~gv~Nld 325 (570)
-|.|-..|+.. +|..++..| +.-.+.|+|.|=+.+ -.++++...++. +...+....+.+. .-+.++ ++
T Consensus 8 LRDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~-l~~~~~~~~v~~~~r~~~~d---i~ 78 (262)
T cd07948 8 LREGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEA-IAKLGLKAKILTHIRCHMDD---AR 78 (262)
T ss_pred CCCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-HHhCCCCCcEEEEecCCHHH---HH
Confidence 45566666654 455666444 445578999986643 334444444433 3344444444433 222222 22
Q ss_pred HHHHh-CCEEEEc--CCCcc----cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHh
Q 008319 326 SIISA-SDGAMVA--RGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (570)
Q Consensus 326 eIl~~-sDgImIg--rGDLg----~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (570)
..++. .|.|-+- -.|.- .....++.....+++++.+++.|..|.+.- . +... -+...+.+.+..+.+
T Consensus 79 ~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--e--da~r--~~~~~l~~~~~~~~~ 152 (262)
T cd07948 79 IAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--E--DSFR--SDLVDLLRVYRAVDK 152 (262)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--E--eeCC--CCHHHHHHHHHHHHH
Confidence 22333 5654442 11110 012234566667889999999998876641 1 1121 113446666655444
Q ss_pred -CccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 399 -GADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 399 -G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
|+|.+.|. +|.=.-+|.++-+++..+-+.
T Consensus 153 ~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 153 LGVNRVGIA-DTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred cCCCEEEEC-CcCCCCCHHHHHHHHHHHHHh
Confidence 99998884 787788899888888877543
No 194
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=67.02 E-value=89 Score=33.65 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
.-+...|+..|.|+.+. .|..+....+...-..|++.++. |...-++.+...+++.+-. .++
T Consensus 61 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~------~~~~~~a~~~a~~~~~~~~-~~~ 122 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILH------GDDYDEAYAFATSLAEEEG-RVF 122 (380)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHhcC-CEe
Confidence 35666899999999874 22222233466677899998764 2234577777777665532 222
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHh----cCCCCeEEEEeCCHH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQER 499 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~----~RP~~pIiavt~~~~ 499 (570)
..+ |.+. .....-..-+.++.++++. .||+..-+|.++.-+++ +.|...||+|-+...
T Consensus 123 ~~~-~~~~------~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 123 VHP-FDDE------FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred cCC-CCCh------hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 121 2111 1112122334567777754 89999889988765554 479999999999654
No 195
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=67.00 E-value=36 Score=35.18 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+.+..++++.++. .+.+++-+-..+.++-+. +.+|.+.||-+++.. -.+++.+.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~---~~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVA---EYADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHH---hhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 45566777777654 467888777776665554 458999999776632 34788888999999987
Q ss_pred ccchhhhhcCCCcChHHHhHHHHHHH-hCccEEEec
Q 008319 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (570)
Q Consensus 372 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 406 (570)
|.|. ++-.|+...+..+. .|.+-++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 6543 35677777777775 577656664
No 196
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=66.83 E-value=1.9e+02 Score=31.21 Aligned_cols=155 Identities=14% Similarity=0.065 Sum_probs=90.6
Q ss_pred CCChhhHHHhhh-hhhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEEee-cCcchhhhHHHHHHh-CCEEEE--c
Q 008319 264 SITDKDWEDIKF-GVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAMV--A 337 (570)
Q Consensus 264 ~lt~kD~~dI~~-~~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IiaKI-Et~~gv~NldeIl~~-sDgImI--g 337 (570)
.+|..++..|.. -.+.|+|.|=+.|-. +..+...++... +.+.+..+.+-. -+ .+.++..++. .|.|.+ +
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~---~~di~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRAR---DADIEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCC---HHHHHHHHcCCcCEEEEEEc
Confidence 356677766644 456899999776543 333444454443 334445555543 12 2334444433 564443 3
Q ss_pred CCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecccccCC
Q 008319 338 RGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHG 412 (570)
Q Consensus 338 rGDLg~e----ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETA~G 412 (570)
-.|+-.+ ...++.....++.++.++++|..+-+. ......-+...+.+++. +...|+|.+.|. +|.=.
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~ 167 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG------GEDASRADPDFLVELAEVAAEAGADRFRFA-DTVGI 167 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe------ecCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCC
Confidence 3332111 122344555568899999999887653 12333334444555544 455799999885 88878
Q ss_pred CCHHHHHHHHHHHHHHh
Q 008319 413 KFPLKAVKVMHTVALRT 429 (570)
Q Consensus 413 ~yP~eaV~~m~~I~~~a 429 (570)
-.|.+.-+.+..+..+.
T Consensus 168 ~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 168 LDPFSTYELVRALRQAV 184 (365)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 89999999998888665
No 197
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=66.44 E-value=60 Score=35.23 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Q 008319 293 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (570)
Q Consensus 293 ~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaT 372 (570)
+.+..++++.++. .+.+++-+-..+.++- +.+.+|.+.||-+++.. -.+++.+.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~---l~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEV---ALDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHH---HHHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 5566777777654 4678887766655544 44559999999877743 357778888999999865
Q ss_pred cchhhhhcCCCcChHHHhHHHHHHH-hCccEEEec
Q 008319 373 NMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (570)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 406 (570)
.|. +|-.|+...++.+. .|.+-++|.
T Consensus 233 G~~--------~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GLS--------ATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--------CCHHHHHHHHHHHHHCCCCCEEEE
Confidence 542 45678777777776 566555554
No 198
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=66.29 E-value=10 Score=42.13 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=40.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 101 tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
-.+=+.+|..-.+.+..+.|+++|++++-++.+||..+.+.+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3455577877778899999999999999999999988877777777765
No 199
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.01 E-value=1.1e+02 Score=31.68 Aligned_cols=89 Identities=12% Similarity=0.177 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 008319 294 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (570)
Q Consensus 294 dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTq 373 (570)
.++.++++-++ ..+.+++-+-+.+.++-+ .+.+|.+.||-+++.. -.+++++.+.||||++.|.
T Consensus 67 gl~~L~~~~~~--~Gl~~~Tev~d~~~v~~~---~e~vdilqIgs~~~~n-----------~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 67 GIRYLHEVCQE--FGLLSVSEIMSERQLEEA---YDYLDVIQVGARNMQN-----------FEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHH--cCCCEEEeeCCHHHHHHH---HhcCCEEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 34555665544 357788877666655544 4469999999777632 5677888889999998533
Q ss_pred chhhhhcCCCcChHHHhHHHHHHH-hCccEEEec
Q 008319 374 MLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 406 (570)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 406 (570)
..+|-.|+...+..+. .|..-++|.
T Consensus 131 --------~~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 131 --------LMATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 2567788888887776 466556665
No 200
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=65.84 E-value=1.1e+02 Score=31.09 Aligned_cols=136 Identities=12% Similarity=0.184 Sum_probs=71.8
Q ss_pred hhHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceE-------EEeecCc-chhhhHHHHHHh-----CC
Q 008319 268 KDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHV-------IVKIESA-DSIPNLHSIISA-----SD 332 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~I-------iaKIEt~-~gv~NldeIl~~-----sD 332 (570)
++.+|++..++.|++.+.+. ..++++-+.++-+ ..+.++.+ ..|+..- +.-.+..++++. ++
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~---~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIA---EHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHH---HhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC
Confidence 46688888889999987665 3355555554433 33333221 1111000 011233333332 56
Q ss_pred EEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccC
Q 008319 333 GAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411 (570)
Q Consensus 333 gImIg-rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~ 411 (570)
.+++- +.==+..-|+ ++. ..+++ ++....|+|.+ ...-+..++.........|+|++|+..---.
T Consensus 162 ~iiv~~~~~~g~~~G~-d~~-~i~~i---~~~~~ipvias---------GGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 162 RYVVTDVTKDGTLTGP-NLE-LLREV---CARTDAPVVAS---------GGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred EEEEEeecCCCCccCC-CHH-HHHHH---HhhCCCCEEEe---------CCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 66663 2111222232 322 22333 34568999964 4444554444443333569999999877678
Q ss_pred CCCHHHHHH
Q 008319 412 GKFPLKAVK 420 (570)
Q Consensus 412 G~yP~eaV~ 420 (570)
|.++++-..
T Consensus 228 g~~~~~~~~ 236 (241)
T PRK14024 228 GAFTLPEAL 236 (241)
T ss_pred CCCCHHHHH
Confidence 888877543
No 201
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=65.77 E-value=37 Score=34.62 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHhhhhhhcCCcEEEe---------------cCCCChhHHHHHHHHHHhcCC--CceEEEeecCc--------chhhhHH
Q 008319 271 EDIKFGVDNQVDFYAV---------------SFVKDAKVVHELKDYLKSCNA--DIHVIVKIESA--------DSIPNLH 325 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~---------------SfV~sa~dv~~vr~~l~~~~~--~i~IiaKIEt~--------~gv~Nld 325 (570)
+.++...+.|+++|.+ ..+...+.+..++...+..+. +..|+|..|+. ++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 4455666789999988 444555555666666665554 89999997664 3444444
Q ss_pred HHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCC-cChHHHhHHHHHHHhCccEE
Q 008319 326 SIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAV 403 (570)
Q Consensus 326 eIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~-PtrAEv~Dv~nav~~G~D~v 403 (570)
.-.+. +|++|+-... -.+++-+.+++...|+.+- +...+. ++..| .-..|+..+
T Consensus 168 ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~------l~~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN------MTPGGNLLTVAE------LAELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE------ecCCCCCCCHHH------HHHCCCeEE
Confidence 44445 8999994221 2255666667788998863 111111 34443 345688877
Q ss_pred Eec
Q 008319 404 MLS 406 (570)
Q Consensus 404 mLs 406 (570)
...
T Consensus 224 ~~~ 226 (243)
T cd00377 224 SYG 226 (243)
T ss_pred EEC
Confidence 763
No 202
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=65.22 E-value=1.3e+02 Score=31.97 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=61.6
Q ss_pred cCCcEEEecCC----------CChhHHHH----HHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-----CCEEEE-cC
Q 008319 279 NQVDFYAVSFV----------KDAKVVHE----LKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMV-AR 338 (570)
Q Consensus 279 ~gvd~I~~SfV----------~sa~dv~~----vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImI-gr 338 (570)
..+|+|-+.|- +..+.+.+ +++.....+.++++++|+---...+++.++++. +|+|.+ +|
T Consensus 159 ~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 159 PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 35888877551 11233333 333333234468999999422222355555543 788875 32
Q ss_pred C---------CcccCC-CC---CCHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEE
Q 008319 339 G---------DLGAEL-PI---EDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV 403 (570)
Q Consensus 339 G---------DLg~ei-g~---~~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~v 403 (570)
- .+.... |+ ...+...+.+-...+.. ..|++.. ...-| ..|+..++..|+|++
T Consensus 239 ~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~---------GGI~t---~~da~e~l~aGAd~V 306 (327)
T cd04738 239 TISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGV---------GGISS---GEDAYEKIRAGASLV 306 (327)
T ss_pred cccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEE---------CCCCC---HHHHHHHHHcCCCHH
Confidence 1 011101 11 12233444444444444 5788753 33333 346778888999999
Q ss_pred Eeccc
Q 008319 404 MLSGE 408 (570)
Q Consensus 404 mLs~E 408 (570)
++...
T Consensus 307 ~vg~~ 311 (327)
T cd04738 307 QLYTG 311 (327)
T ss_pred hccHH
Confidence 99643
No 203
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=65.20 E-value=1.9e+02 Score=30.61 Aligned_cols=127 Identities=7% Similarity=-0.029 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
.-+...|++.|.++.+... ....+. . ...-.-..|++..+...+.... ..-.+.+...++..+-...+.
T Consensus 85 ~alA~~a~~~G~~~~ivvp------~~~~~~---~-~~~l~~~~Ga~v~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 153 (329)
T PRK14045 85 FVTGLAAKKLGLDAVLVLR------GKEELK---G-NYLLDKIMGIETRVYEAKDSFE-LMKYAEEVAEELKGEGRKPYI 153 (329)
T ss_pred HHHHHHHHHcCCeEEEEEe------CCCCCC---c-CHHHHHHCCCEEEEECCCcccc-hHHHHHHHHHHHHhcCCCEEE
Confidence 3567789999999887522 111111 0 1111234788877654322111 122334444333322211111
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcC-----C-cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN-----T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 498 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-----a-~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~ 498 (570)
....+. ...-.......+.++.++++ . .||+.+=||.|+--++++ .|.+.|+++.+..
T Consensus 154 ~p~~~~------n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 154 IPPGGA------SPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred ECCCCC------chhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 111000 00112223333346666553 4 799999999998777664 5999999999965
No 204
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.03 E-value=13 Score=40.15 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=41.8
Q ss_pred eEEEecCCCCCCHHHHHHHHHh--CCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 102 KIVCTIGPSTSSREMIWKLAEE--GMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 102 KIi~TiGPs~~~~e~l~~li~~--Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
.+..++|-..++.|.+++|+++ |+|+.=|+.|||..+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 3455788888999999999995 99999999999999988888888876
No 205
>PRK06852 aldolase; Validated
Probab=64.81 E-value=47 Score=35.34 Aligned_cols=128 Identities=13% Similarity=0.086 Sum_probs=71.5
Q ss_pred chhhhHHHHHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHH--HHcCCCEEEEccchhhhhc-CC----CcCh
Q 008319 319 DSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRC--RSMQKPVIVATNMLESMID-HP----TPTR 386 (570)
Q Consensus 319 ~gv~NldeIl~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c--~~~gKPvivaTqmLeSM~~-~~----~Ptr 386 (570)
.|++|++.+++. +|+++.-+| +++.+ ....+|.|+-- ++-.. .+ .|..
T Consensus 56 ~gl~dp~~~i~~~~~~g~dav~~~~G-----------------~l~~~~~~~~~~~lIlkl---~~~t~l~~~~~~~p~~ 115 (304)
T PRK06852 56 KDDADPEHLFRIASKAKIGVFATQLG-----------------LIARYGMDYPDVPYLVKL---NSKTNLVKTSQRDPLS 115 (304)
T ss_pred cccCCHHHHHHHHHhcCCCEEEeCHH-----------------HHHhhccccCCCcEEEEE---CCCCCcCCcccCCccc
Confidence 467776666554 567776433 22222 12357777642 22111 12 4555
Q ss_pred HHHhHHHHHHHhC------ccEEEecccccC-CCCHHHHHHHHHHHHHHhhcC-CCCC-CCCCCcccCC-CCChhHHHHH
Q 008319 387 AEVSDIAIAVREG------ADAVMLSGETAH-GKFPLKAVKVMHTVALRTESS-LPVS-ITPPTQFSAH-KSHMGDMFAF 456 (570)
Q Consensus 387 AEv~Dv~nav~~G------~D~vmLs~ETA~-G~yP~eaV~~m~~I~~~aE~~-~~~~-~~~~~~~~~~-~~~~~~~ia~ 456 (570)
.-+.++-.|+..| +|+|..+- -. +.+=-+.++.+.+|+.+++++ ++.- ..|.. .... +....+.++
T Consensus 116 ~l~~sVeeAvrlG~~~~~~AdAV~v~v--~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~ypr-G~~i~~~~~~~~ia- 191 (304)
T PRK06852 116 RQLLDVEQVVEFKENSGLNILGVGYTI--YLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPR-GKAVKDEKDPHLIA- 191 (304)
T ss_pred cceecHHHHHhcCCccCCCceEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeecc-CcccCCCccHHHHH-
Confidence 4477788999998 88887642 23 334467888888899999875 1110 01111 1111 112345554
Q ss_pred HHHHHHhhcCCcEE
Q 008319 457 HSTTMANTLNTPII 470 (570)
Q Consensus 457 ~av~~a~~~~a~Ii 470 (570)
.|+++|-+++|=||
T Consensus 192 ~aaRiaaELGADIV 205 (304)
T PRK06852 192 GAAGVAACLGADFV 205 (304)
T ss_pred HHHHHHHHHcCCEE
Confidence 56699999999433
No 206
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=64.78 E-value=33 Score=35.58 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=57.3
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.+++.++.|+++|++. +....|..+-++...+....++.|++-+= |.++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 55578889999998754 22223333334444555556788888874 34455554444444 899999765
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+.. .+-+.+...-++|. .+.+.|+++.
T Consensus 106 ~~~~-~~~~~i~~~~~~ia---~~~~~pv~lY 133 (292)
T PRK03170 106 YYNK-PTQEGLYQHFKAIA---EATDLPIILY 133 (292)
T ss_pred cCCC-CCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 5421 12234444444444 4457999975
No 207
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=64.73 E-value=62 Score=37.93 Aligned_cols=266 Identities=16% Similarity=0.182 Sum_probs=131.3
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCCh-HHH---HHHHHHH-HHHHhhcCCCcEEEEeecCCCeeeecc
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDH-ASH---QKTIDLV-KEYNSQFEDKAVAIMLDTKGPEVRSGD 174 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~-e~~---~~~i~~i-r~~~~~~~~~~i~I~~Dl~GpkiR~G~ 174 (570)
.|+|-+++ .+|+.|++.|..+.= +||-.. ... .-.++.+ ...++.++ ++|...=|.-||+.+-
T Consensus 35 d~RI~~~l-------pTI~~l~~~gakvvl--~SH~gRP~~~~~~~~SL~~va~~L~~~L~-~~V~f~~d~~g~~~~~-- 102 (645)
T PRK13962 35 DTRIRAAL-------PTIKYLLDHGAKVIL--VSHLGRPKGEFDPKFSMAPVAKRLSELLG-KEVIFAKDVIGDDAKK-- 102 (645)
T ss_pred cHhHHHHH-------HHHHHHHhCCCeEEE--EEecCCCCCCcCccCCHHHHHHHHHHHHC-CCeEECCCCCCHHHHH--
Confidence 46666555 479999999988654 477543 110 0122222 22334455 8888888888876541
Q ss_pred CCCceeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEeccCcccc
Q 008319 175 VPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLN 254 (570)
Q Consensus 175 ~~~~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn 254 (570)
..-.|++|+.+.|-.-+....++. |.++|.+.+.+---||+.|.-=.
T Consensus 103 --~i~~l~~GeilLLEN~Rf~~~E~~---~d~~~~~~LA~l~DvyVNDAFg~---------------------------- 149 (645)
T PRK13962 103 --AVAQLKEGDVLLLENVRFHKEETK---NDPEFAKELASLADIYVNDAFGT---------------------------- 149 (645)
T ss_pred --HHhcCCCCcEEEEeccCcCccccc---CHHHHHHHHHHhCCEEEechhhh----------------------------
Confidence 012467777776654433222211 33455555544434676662100
Q ss_pred cCCCccCCCCCChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCC-ceEE--EeecCcchhhhHHHHHHhC
Q 008319 255 VRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVI--VKIESADSIPNLHSIISAS 331 (570)
Q Consensus 255 ~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~-i~Ii--aKIEt~~gv~NldeIl~~s 331 (570)
.+-.-+.+.- +...++. + ..|. =..++..+.+.+..-... +.|+ ||+.++ +.=|+.+++.+
T Consensus 150 ---aHR~haS~~g-----i~~~lp~---~--aG~l-mekEl~~L~k~l~~p~rP~vaIlGGaKvsdK--i~vl~~ll~~~ 213 (645)
T PRK13962 150 ---AHRAHASTAG-----VAEYLPA---V--AGFL-MEKEIEFLGKALANPQRPFVAILGGAKVSDK--IGVIENLLEKV 213 (645)
T ss_pred ---hhhcccchhh-----hhhhhhh---h--hhHH-HHHHHHHHHHHHcCCCCceEEEEcCccHHhH--HHHHHHHHHhC
Confidence 0000000000 0000000 0 0000 023344445555432222 2233 477764 44567778889
Q ss_pred CEEEEcCC-------CcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCc
Q 008319 332 DGAMVARG-------DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (570)
Q Consensus 332 DgImIgrG-------DLg~eig~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 400 (570)
|.+++|=| -.|.++|. ++....-++|++++++.|+.+++.+...-.=.......+ ...+. +.+- .
T Consensus 214 D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~lPvD~~~~~~~~~~~~~-~~~~~-~~ip--~ 289 (645)
T PRK13962 214 DKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLLLPVDSVVAKEFKNDAEH-KVVPS-DAIP--E 289 (645)
T ss_pred CEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEECCcEEEeecccCCCCce-EEEec-ccCC--C
Confidence 99999821 12334443 355566679999999999988865432211000000000 01110 1111 1
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 008319 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSI 437 (570)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~ 437 (570)
|...|. +|. ++++...+++..+...+|+-.
T Consensus 290 ~~~~lD----IGp---~Ti~~~~~~i~~akti~wNGP 319 (645)
T PRK13962 290 DWMGLD----IGP---ETIELFAKKIADAKTIVWNGP 319 (645)
T ss_pred CCEEEe----eCH---HHHHHHHHHHhhCCEEEEECC
Confidence 222232 443 788999999999998888754
No 208
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=64.67 E-value=1.3e+02 Score=31.50 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=61.9
Q ss_pred HHhhhhhhcCCcEEEecCCCCh--------hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEc-CCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDA--------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa--------~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIg-rGD 340 (570)
+.++.+.+.|+|.|.+.+ ..+ +.+.++++.+ +.++++|.- ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g- 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG- 203 (299)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC-
Confidence 445666678999887653 222 3444444432 367888841 233444444444 8999884 22
Q ss_pred cccCC--CCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 341 LGAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 341 Lg~ei--g~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
|..+ +.+. .....++.+... -..|+|.+ ...-+ ..|+..++..|+|+||+..
T Consensus 204 -G~~~~~g~~~-~~~l~~i~~~~~-~~ipvia~---------GGI~~---~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 204 -GRQLDGAPAT-IDALPEIVAAVG-GRIEVLLD---------GGIRR---GTDVLKALALGADAVLIGR 257 (299)
T ss_pred -CCCCCCCcCH-HHHHHHHHHHhc-CCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEcH
Confidence 2222 2221 122222222221 14888754 33333 3578899999999999864
No 209
>PLN02417 dihydrodipicolinate synthase
Probab=64.35 E-value=34 Score=35.43 Aligned_cols=95 Identities=13% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.++|.++.|+++|++. .....|..+-++...+..+.+++|++-+= |.++++....--+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45578889999998764 11222222333444555567789999884 45566555555555 899999877
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.... .+-+.+...-+.+.+. . |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 6532 2223444444555442 3 98874
No 210
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=63.76 E-value=86 Score=33.96 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=73.1
Q ss_pred hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCCCCCC
Q 008319 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~eig~~~ 349 (570)
..+...|+|+|=++. +.-.+...+.++ +.+..|-+ +..|++|+.++ +|.|.+||---+..=+-..
T Consensus 211 dlAl~~~aDGVHLgq--~dl~~~~aR~ll---g~~~iIG~------S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~ 279 (347)
T PRK02615 211 DIALAVDADGVHLGQ--EDLPLAVARQLL---GPEKIIGR------STTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKA 279 (347)
T ss_pred HHHHHcCCCEEEeCh--hhcCHHHHHHhc---CCCCEEEE------ecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCC
Confidence 345567888887763 111134445544 34433433 33455555543 8999999744332111111
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
+.--+.+-..+.....|++-. -... . .++......|+|+|.+.+.-.....|.++++.+.....+
T Consensus 280 -~~Gle~l~~~~~~~~iPv~Ai--------GGI~--~---~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 280 -PAGLEYLKYAAKEAPIPWFAI--------GGID--K---SNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred -CCCHHHHHHHHHhCCCCEEEE--------CCCC--H---HHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 111122223344567897742 2222 2 235566788999999988777677899999988877654
No 211
>PRK06382 threonine dehydratase; Provisional
Probab=63.75 E-value=1.2e+02 Score=33.09 Aligned_cols=118 Identities=11% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 008319 357 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 436 (570)
Q Consensus 357 Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (570)
+...|+..|.++.+. .|..+-...+...-..|++.+.. + ...-++.+...+++.+- ..++..
T Consensus 88 ~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv~~-~-----~~~~~a~~~a~~la~~~-~~~~v~ 149 (406)
T PRK06382 88 VAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVILT-G-----RDYDEAHRYADKIAMDE-NRTFIE 149 (406)
T ss_pred HHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEEEE-C-----CCHHHHHHHHHHHHHhc-CCEecC
Confidence 567899999999875 23222223344566789997654 3 23456777766665542 222221
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCHH
Q 008319 437 ITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQER 499 (570)
Q Consensus 437 ~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~~ 499 (570)
+ |.+ ....+.-..-+.++.++++. .||+..-+|.++.-++++ .|.+.||++-+...
T Consensus 150 ~-~~~------~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 150 A-FND------RWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred c-cCC------hHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1 111 11222333445677777765 789999999887766654 89999999999654
No 212
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=63.39 E-value=1.1e+02 Score=31.89 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=88.2
Q ss_pred HHHHHHhcCCCceEEE---eecC---cchhhhHHHHHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCC
Q 008319 298 LKDYLKSCNADIHVIV---KIES---ADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQK 366 (570)
Q Consensus 298 vr~~l~~~~~~i~Iia---KIEt---~~gv~NldeIl~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gK 366 (570)
+.+++.....++.++| .+|. .++++|++++++. +|+++.-+|=+..--+ --...+
T Consensus 13 l~rif~~~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dv 78 (265)
T COG1830 13 LARIFNRGTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDV 78 (265)
T ss_pred HHHHhcCCCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCc
Confidence 3344433233455655 3554 2477777777765 5777765543322111 112357
Q ss_pred CEEEEccchhhhhcCCCcChHH--HhHHHHHHHhCccEEE----ecccccCCCCHHHHHHHHHHHHHHhhcCC-CCC-CC
Q 008319 367 PVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVM----LSGETAHGKFPLKAVKVMHTVALRTESSL-PVS-IT 438 (570)
Q Consensus 367 PvivaTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vm----Ls~ETA~G~yP~eaV~~m~~I~~~aE~~~-~~~-~~ 438 (570)
|.++ .|.++..-..++.-. +..+=.|+..|+|++- +-+|+- -+.++.+.++..++.++- +.- ..
T Consensus 79 pliv---kl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~ 150 (265)
T COG1830 79 PLIV---KLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWA 150 (265)
T ss_pred CEEE---EeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEE
Confidence 8887 566653322222222 6667788999999975 444444 688888888888888651 100 00
Q ss_pred CCCcccCCC---CChhHHHHHHHHHHHhhcCCcEEE--EcCChHHHHHHHhcCC
Q 008319 439 PPTQFSAHK---SHMGDMFAFHSTTMANTLNTPIIV--FTRTGSMAVILSHYRP 487 (570)
Q Consensus 439 ~~~~~~~~~---~~~~~~ia~~av~~a~~~~a~Iiv--~T~sG~tA~~ls~~RP 487 (570)
|.. ....+ ....+.+++ |.+++.+++|=||= +|.+-.+=+.+-++=|
T Consensus 151 YpR-g~~~~~~~~~d~~~v~~-aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~ 202 (265)
T COG1830 151 YPR-GPAIKDEYHRDADLVGY-AARLAAELGADIIKTKYTGDPESFRRVVAACG 202 (265)
T ss_pred ecc-CCcccccccccHHHHHH-HHHHHHHhcCCeEeecCCCChHHHHHHHHhCC
Confidence 110 11111 123455544 67888899995444 4444333334433333
No 213
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=63.31 E-value=82 Score=34.26 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=124.6
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCC
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIED 349 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~ 349 (570)
.+.|..-.+.|+|.|-++ |.+.++...++..-+.. +++++|-|-- +.--.+..+-.-+|.+=|-||.++ .
T Consensus 45 v~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHF-d~~lAl~a~~~G~~~iRINPGNig------~ 114 (360)
T PRK00366 45 VAQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHF-DYRLALAAAEAGADALRINPGNIG------K 114 (360)
T ss_pred HHHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCC-CHHHHHHHHHhCCCEEEECCCCCC------c
Confidence 345555567899999887 67788887777766543 6999998832 222233333334899999999883 4
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcc--chhhhhc--CCCcChHH-----HhHHHHHHHhCccEEEecccccCCCCHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQKPVIVATN--MLESMID--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAVK 420 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~gKPvivaTq--mLeSM~~--~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~ 420 (570)
...--+.++++|+++|+|+=+-.+ =|+.-.. ...||..- ...+.-+-..|++=+.+| ..-..|..+|+
T Consensus 115 ~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS---~KsS~v~~~i~ 191 (360)
T PRK00366 115 RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKIS---VKASDVQDLIA 191 (360)
T ss_pred hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEE---EEcCCHHHHHH
Confidence 456778999999999999744332 2222221 12244321 333445566789989988 44556667777
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCCcEEE-EcCChHHHHHHHhcCCCCeEEEEeCCHH
Q 008319 421 VMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIV-FTRTGSMAVILSHYRPSSTIFAFTNQER 499 (570)
Q Consensus 421 ~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv-~T~sG~tA~~ls~~RP~~pIiavt~~~~ 499 (570)
.-+.+.++.+ ++.+-=-.+........+..+++.++. +++-++-.|=| +|..---=..++ ..
T Consensus 192 ayrlla~~~d--yPLHlGvTEAG~~~~G~iKSa~gig~L-L~~GIGDTiRVSLt~~P~~EV~va--------------~~ 254 (360)
T PRK00366 192 AYRLLAKRCD--YPLHLGVTEAGMGFKGTVKSAAGLGAL-LQEGIGDTIRVSLTADPVEEVKVG--------------QE 254 (360)
T ss_pred HHHHHHhcCC--CCceecccCCCCCCCceehhHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHH--------------HH
Confidence 6666654443 111100001111112234555555533 45545544433 555432222222 23
Q ss_pred HHHHhccc-cCcEEEEecC
Q 008319 500 IKQRLVLY-QGVMPIYMQF 517 (570)
Q Consensus 500 taRrL~L~-rGV~Pil~~~ 517 (570)
+.+.|.|. +|+..+.+|.
T Consensus 255 IL~slglr~~g~~IisCPg 273 (360)
T PRK00366 255 ILQSLGLRSRGPEVISCPT 273 (360)
T ss_pred HHHHcCCccCCCeEEECCC
Confidence 56777775 6777777664
No 214
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=63.30 E-value=93 Score=31.35 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=75.7
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcch-------hhhHHHHHHh----CCEEEE
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-------IPNLHSIISA----SDGAMV 336 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g-------v~NldeIl~~----sDgImI 336 (570)
++.+|++..+..|++-|.++-. ...+ ..+++.++..+.+ .+++-|....+ ..++.+.++. ++.+++
T Consensus 88 r~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 164 (233)
T cd04723 88 RSLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIV 164 (233)
T ss_pred CCHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEE
Confidence 3467888888899998877632 3334 4556666665542 45565655444 2234444433 577777
Q ss_pred cCCCcccCCCC--CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC
Q 008319 337 ARGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 414 (570)
Q Consensus 337 grGDLg~eig~--~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y 414 (570)
. |+..+-.. .++ ...+++ ++....|++.+ ...-+ ..|+..+...|+|++++..-=-.|++
T Consensus 165 ~--di~~~G~~~g~~~-~~~~~i---~~~~~ipvi~~---------GGi~s---~edi~~l~~~G~~~vivGsal~~g~~ 226 (233)
T cd04723 165 L--DIDRVGSGQGPDL-ELLERL---AARADIPVIAA---------GGVRS---VEDLELLKKLGASGALVASALHDGGL 226 (233)
T ss_pred E--EcCccccCCCcCH-HHHHHH---HHhcCCCEEEe---------CCCCC---HHHHHHHHHcCCCEEEEehHHHcCCC
Confidence 4 44332211 122 222333 34568999975 33333 34566667789999999755447777
Q ss_pred HHHHH
Q 008319 415 PLKAV 419 (570)
Q Consensus 415 P~eaV 419 (570)
+.+.+
T Consensus 227 ~~~~~ 231 (233)
T cd04723 227 TLEDV 231 (233)
T ss_pred CHHHH
Confidence 76644
No 215
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=63.14 E-value=1.3e+02 Score=32.71 Aligned_cols=136 Identities=16% Similarity=0.111 Sum_probs=75.0
Q ss_pred hhhhHHHHHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHH-HH--HcCCCEEEEccchhhhhcCCCcChHHHhH
Q 008319 320 SIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRR-CR--SMQKPVIVATNMLESMIDHPTPTRAEVSD 391 (570)
Q Consensus 320 gv~NldeIl~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~-c~--~~gKPvivaTqmLeSM~~~~~PtrAEv~D 391 (570)
|+.|++.+++. +|+++.-+|=| +. ++ ...+|.|+--.-=.++.....+...-+.+
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l-----------------~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~s 151 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVL-----------------EAVARKYAHKIPFILKLNHNELLSYPNTYDQALTAS 151 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHH-----------------HhccccccCCCCEEEEeCCCCCCCCCCCCcccceec
Confidence 77777766654 68888764433 22 11 12478777422111121111234444778
Q ss_pred HHHHHHhCccEEEecccccCC-CCHHHHHHHHHHHHHHhhcC-CCCC-CCCC---CcccCCC-CChhHHHHHHHHHHHhh
Q 008319 392 IAIAVREGADAVMLSGETAHG-KFPLKAVKVMHTVALRTESS-LPVS-ITPP---TQFSAHK-SHMGDMFAFHSTTMANT 464 (570)
Q Consensus 392 v~nav~~G~D~vmLs~ETA~G-~yP~eaV~~m~~I~~~aE~~-~~~~-~~~~---~~~~~~~-~~~~~~ia~~av~~a~~ 464 (570)
|-.|+..|+|+|..+- -.| .+=-+.++.+.+++.+++.+ ++.- ..|. .+....+ .+..+.+| .|+++|-+
T Consensus 152 VedAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia-~AaRiaaE 228 (348)
T PRK09250 152 VEDALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTG-QANHLAAT 228 (348)
T ss_pred HHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHH-HHHHHHHH
Confidence 9999999999998752 233 33357788888888888875 1100 0111 1111110 11245554 56889999
Q ss_pred cCC-cEEE-EcCC
Q 008319 465 LNT-PIIV-FTRT 475 (570)
Q Consensus 465 ~~a-~Iiv-~T~s 475 (570)
++| -|=+ +|.+
T Consensus 229 LGADIVKv~yp~~ 241 (348)
T PRK09250 229 IGADIIKQKLPTN 241 (348)
T ss_pred HcCCEEEecCCCC
Confidence 999 4434 5543
No 216
>PRK06381 threonine synthase; Validated
Probab=62.96 E-value=1.2e+02 Score=31.84 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+++. .|.......+...-..|++.+...+ .| -++++...+.+++ +..++.
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~~~ 138 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIYDA 138 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcEec
Confidence 4566899999999875 2222223445677789999988864 23 4677777777654 322211
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHHhc----------CCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILSHY----------RPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls~~----------RP~~pIiavt~~~ 498 (570)
.+...+ .....+....-+.++.++++ . .||+.+-+|.++--++++ .|...|+++.+..
T Consensus 139 ~~~~~n-----~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~ 209 (319)
T PRK06381 139 NPGSVN-----SVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSG 209 (319)
T ss_pred CCCCCC-----cchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCC
Confidence 111000 00012233444556677765 3 799999999998888774 6888999999854
No 217
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=62.95 E-value=1.5e+02 Score=28.60 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=77.7
Q ss_pred HHHhhhhhhcCCcEEEec-----CCCC-hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcc
Q 008319 270 WEDIKFGVDNQVDFYAVS-----FVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG 342 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~S-----fV~s-a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg 342 (570)
.++++.+.+.|+|.|.+- |+.+ ......++++-+..+..+.+-.|+... .+-++.+.+. +||+.+--
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~--~~~~~~~~~~gadgv~vh~---- 87 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP--DRYIEDFAEAGADIITVHP---- 87 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH--HHHHHHHHHcCCCEEEEcc----
Confidence 366777888999999884 6643 333333444332222233333566543 2446666655 89988831
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc--cccC-CCCHHHHH
Q 008319 343 AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLKAV 419 (570)
Q Consensus 343 ~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ETA~-G~yP~eaV 419 (570)
+.. ....+.++.+++.|..+++.. ++. |..| ....+..++|.+++.+ .+.. ..++...+
T Consensus 88 ---~~~---~~~~~~~~~~~~~g~~~~~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~ 149 (210)
T TIGR01163 88 ---EAS---EHIHRLLQLIKDLGAKAGIVL--------NPA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTL 149 (210)
T ss_pred ---CCc---hhHHHHHHHHHHcCCcEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHH
Confidence 111 223567788999998877641 111 2222 3455667889887632 1223 35666777
Q ss_pred HHHHHHHHHhh
Q 008319 420 KVMHTVALRTE 430 (570)
Q Consensus 420 ~~m~~I~~~aE 430 (570)
+.++++.+...
T Consensus 150 ~~i~~i~~~~~ 160 (210)
T TIGR01163 150 EKIREVRKMID 160 (210)
T ss_pred HHHHHHHHHHH
Confidence 77777765544
No 218
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=62.82 E-value=41 Score=34.99 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHhhhhhhcCCcEEEec------CCCChhHH-HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-----CCEEEEcC
Q 008319 271 EDIKFGVDNQVDFYAVS------FVKDAKVV-HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 338 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S------fV~sa~dv-~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImIgr 338 (570)
+.+++.++.|+|+|++. +.=|.++- +-++..++..+.++.||+-+- . +.++.-+.++. +|++|+.+
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 45578889999998664 22233333 334445565567788999884 2 34433333332 79999976
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
--... .+.+.+...-+.+ +.+.+.|+++.
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 54421 1223344444444 44568999975
No 219
>PLN02321 2-isopropylmalate synthase
Probab=62.67 E-value=1.6e+02 Score=34.45 Aligned_cols=168 Identities=16% Similarity=0.203 Sum_probs=97.8
Q ss_pred CcccccCCCccCCCCCChhhHHHhhh-hhhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCc---eEEEeec-----Ccc
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKF-GVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADI---HVIVKIE-----SAD 319 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~-~~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i---~IiaKIE-----t~~ 319 (570)
|.|-.-|+.. +|..++-.|.. -.+.|+|.|=+.| .-++.|...++...+.....+ ..+++|- +.+
T Consensus 95 RDGeQ~~g~~-----~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~ 169 (632)
T PLN02321 95 RDGEQSPGAT-----LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKK 169 (632)
T ss_pred CccccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHH
Confidence 4444455544 56677766644 4578999998766 567778777776654321111 1122221 233
Q ss_pred hhhhHHHHHHhCC----EEEEcCCCcccC----CCCCCHHHHHHHHHHHHHHcCCC-EEEEccchhhhhcCCCcChHHHh
Q 008319 320 SIPNLHSIISASD----GAMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAEVS 390 (570)
Q Consensus 320 gv~NldeIl~~sD----gImIgrGDLg~e----ig~~~v~~~qk~Ii~~c~~~gKP-vivaTqmLeSM~~~~~PtrAEv~ 390 (570)
+++..-+-+.-++ .++++-.|+-++ +..+++....+++++.|+++|.. |.+. +.....-....+.
T Consensus 170 dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs------~EDa~rtd~d~l~ 243 (632)
T PLN02321 170 DIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS------PEDAGRSDPEFLY 243 (632)
T ss_pred hHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe------cccCCCCCHHHHH
Confidence 3332222111111 355555554222 23467777788999999999985 5442 1111122222344
Q ss_pred HHHH-HHHhCccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 391 DIAI-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 391 Dv~n-av~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+++. ++..|+|.+.|. +|.=...|.+.-+++..+....
T Consensus 244 ~~~~~a~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 244 RILGEVIKAGATTLNIP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred HHHHHHHHcCCCEEEec-ccccCCCHHHHHHHHHHHHHhc
Confidence 4444 566799999995 8888889999999998887654
No 220
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.57 E-value=13 Score=41.03 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=42.0
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
+-..-+.+|+.-++.+..+.|+++|+|+.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 44567778887667789999999999999999999988877778777775
No 221
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=62.42 E-value=16 Score=39.44 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=42.3
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCChHHHHHHHHHHHH
Q 008319 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 102 KIi~TiGPs~~~~e~l~~li~~G--m~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
.+...+|-..++.|.+++|+++| .|+.=|+.|||..+...++|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 34557899989999999999996 9999999999999988888888886
No 222
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=62.22 E-value=1.5e+02 Score=30.78 Aligned_cols=71 Identities=32% Similarity=0.337 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHH
Q 008319 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (570)
Q Consensus 345 ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (570)
.|+.+ +...+.|.+. .+.|||+ ....-| -+|++.++..|+|++++.+--+.++.|..-.+.+..
T Consensus 159 ~Gi~~-~~~I~~I~e~---~~vpVI~---------egGI~t---peda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 159 QGLLN-PYNLRIIIER---ADVPVIV---------DAGIGT---PSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred CCCCC-HHHHHHHHHh---CCCcEEE---------eCCCCC---HHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 34444 4555544443 4789986 333333 357889999999999999888888899998888887
Q ss_pred HHHHhhc
Q 008319 425 VALRTES 431 (570)
Q Consensus 425 I~~~aE~ 431 (570)
-++.-..
T Consensus 223 Av~aGr~ 229 (248)
T cd04728 223 AVEAGRL 229 (248)
T ss_pred HHHHHHH
Confidence 7765553
No 223
>PRK08227 autoinducer 2 aldolase; Validated
Probab=62.18 E-value=1.3e+02 Score=31.45 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=80.9
Q ss_pred chhhhHHH----HHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCc-ChHHHhHHH
Q 008319 319 DSIPNLHS----IISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP-TRAEVSDIA 393 (570)
Q Consensus 319 ~gv~Nlde----Il~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~P-trAEv~Dv~ 393 (570)
.|++++++ ++.-+|+++.-+|=+....+ ...++|.|+--. -|-...+.| ...-+.++-
T Consensus 39 ~gl~~~~~~~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls--~~t~~~~~~~~~~l~~sVe 101 (264)
T PRK08227 39 TGLERIDINIAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRAS--GGNSILKELSNEAVAVDME 101 (264)
T ss_pred ccccChHHHHHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEc--CCCCCCCCCCcccceecHH
Confidence 45555444 44347888876543322111 123577776422 111112223 333477899
Q ss_pred HHHHhCccEEEecccccCC-CCHHHHHHHHHHHHHHhhcC-CCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcCCcEEE
Q 008319 394 IAVREGADAVMLSGETAHG-KFPLKAVKVMHTVALRTESS-LPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIV 471 (570)
Q Consensus 394 nav~~G~D~vmLs~ETA~G-~yP~eaV~~m~~I~~~aE~~-~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv 471 (570)
.|+..|+|+|..+- -.| .+--+.++.+.+++++++++ ++.-..++. ....+ +..+ +...|+++|-+++|=||=
T Consensus 102 eAvrlGAdAV~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~pr-G~~~~-~~~~-~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 102 DAVRLNACAVAAQV--FIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAV-GKDMV-RDAR-YFSLATRIAAEMGAQIIK 176 (264)
T ss_pred HHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecC-CCCcC-chHH-HHHHHHHHHHHHcCCEEe
Confidence 99999999998752 233 34467788888888898875 111001110 11112 2344 555678999999995554
Q ss_pred EcCCh-HHHHHHHhcCCCCeEE
Q 008319 472 FTRTG-SMAVILSHYRPSSTIF 492 (570)
Q Consensus 472 ~T~sG-~tA~~ls~~RP~~pIi 492 (570)
...+| ..++.++ -=| +||+
T Consensus 177 ~~y~~~~f~~vv~-a~~-vPVv 196 (264)
T PRK08227 177 TYYVEEGFERITA-GCP-VPIV 196 (264)
T ss_pred cCCCHHHHHHHHH-cCC-CcEE
Confidence 44456 4444444 323 4555
No 224
>PRK06815 hypothetical protein; Provisional
Probab=62.16 E-value=98 Score=32.58 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+.. |..+.-..+...-..|++.+...++ ..++.+...+++.+-. .++.
T Consensus 82 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~~-~~~~ 143 (317)
T PRK06815 82 GVALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQG-KVYI 143 (317)
T ss_pred HHHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhcC-CEEe
Confidence 46678999999998751 2222223455667889999888542 3466666666544322 1111
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+ +.+. ...+.....+.++.++++. .||+..-+|.++--++ .+.|...|+++.+..
T Consensus 144 ~~-~~~~------~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~ 205 (317)
T PRK06815 144 SP-YNDP------QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPAN 205 (317)
T ss_pred cC-CCCh------hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 11 1110 1112223345677777754 7888888888765544 456999999999875
No 225
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=62.15 E-value=1.5e+02 Score=30.41 Aligned_cols=138 Identities=15% Similarity=0.203 Sum_probs=75.9
Q ss_pred HHhhhhhhcCCcEEEec-CCCC---hhHHHHHHHH---HHhcCCCceEEE-----eecCcchhhhHHH---HHHh--CCE
Q 008319 271 EDIKFGVDNQVDFYAVS-FVKD---AKVVHELKDY---LKSCNADIHVIV-----KIESADSIPNLHS---IISA--SDG 333 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-fV~s---a~dv~~vr~~---l~~~~~~i~Iia-----KIEt~~gv~Nlde---Il~~--sDg 333 (570)
..++.+++.|+|.|.+- ++.+ .+...++++. ..+.|..+.++. .+|+....+.+.. ++.. +|.
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~ 176 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADI 176 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCE
Confidence 44567889999965443 3222 2222233333 333343333331 1466432222111 1111 677
Q ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCc-ChHH-HhHHHHHHHhCccEEEecccccC
Q 008319 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP-TRAE-VSDIAIAVREGADAVMLSGETAH 411 (570)
Q Consensus 334 ImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~P-trAE-v~Dv~nav~~G~D~vmLs~ETA~ 411 (570)
|-... . + . ....++++.. ..+||..+ -.+.. |..+ ...+..++..|++++........
T Consensus 177 vKt~~---~---~--~-~~~l~~~~~~---~~ipV~a~--------GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 177 VKTNY---T---G--D-PESFREVVEG---CPVPVVIA--------GGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EeeCC---C---C--C-HHHHHHHHHh---CCCCEEEE--------eCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 76641 1 1 1 2333444433 46898653 33333 3333 44466778999999999999888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 008319 412 GKFPLKAVKVMHTVALR 428 (570)
Q Consensus 412 G~yP~eaV~~m~~I~~~ 428 (570)
...|.+.++.+..++.+
T Consensus 237 ~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 237 HEDPEAITRAISAVVHE 253 (267)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 89999999999998754
No 226
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=61.91 E-value=26 Score=36.25 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=46.9
Q ss_pred hcCCcEEEecCCCC--hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcC-----CCcccCCCCCCH
Q 008319 278 DNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-----GDLGAELPIEDV 350 (570)
Q Consensus 278 ~~gvd~I~~SfV~s--a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgr-----GDLg~eig~~~v 350 (570)
..++|+|.+|=-.+ +.+...+++.-+..+ ++++ +=|---.+|+.++++.+||.+||. |+....+..+++
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv 245 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAVP--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERV 245 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcCC--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHH
Confidence 56899999997654 224444433322223 5555 345556689999999999999994 555555555555
Q ss_pred HHHHH
Q 008319 351 PLLQE 355 (570)
Q Consensus 351 ~~~qk 355 (570)
...++
T Consensus 246 ~~fm~ 250 (254)
T PF03437_consen 246 RRFME 250 (254)
T ss_pred HHHHH
Confidence 44443
No 227
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=61.90 E-value=51 Score=29.89 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
+..+++.+.+.+....+.+.-+.. .-++++++++-.|.|+.+-.+ ......+-+.|+++++|+|.+
T Consensus 58 a~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 58 AEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 456788888888888877744443 457889999889988876433 456778888999999999875
No 228
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=61.79 E-value=1.3e+02 Score=30.32 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=76.1
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH---h-CCEEEEcCCCcccCCCCC
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---A-SDGAMVARGDLGAELPIE 348 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~---~-sDgImIgrGDLg~eig~~ 348 (570)
++.|++.++|+|=++ ++-..+...++.+. .+..|=. +..+++|..+ . .|.|.+||=- .....-.
T Consensus 74 ~dlA~~~~AdGVHlG--q~D~~~~~ar~~~~---~~~iIG~------S~h~~eea~~A~~~g~DYv~~Gpif-pT~tK~~ 141 (211)
T COG0352 74 VDLALAVGADGVHLG--QDDMPLAEARELLG---PGLIIGL------STHDLEEALEAEELGADYVGLGPIF-PTSTKPD 141 (211)
T ss_pred HHHHHhCCCCEEEcC--CcccchHHHHHhcC---CCCEEEe------ecCCHHHHHHHHhcCCCEEEECCcC-CCCCCCC
Confidence 455667899999888 33344555666652 2322222 3334444444 4 8999999732 1111111
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
.-+.--+.+-+..+...+|++. +-.-.|.+ +......|+|+|-+-.......-|..+++-+.+....
T Consensus 142 ~~~~G~~~l~~~~~~~~iP~vA--------IGGi~~~n-----v~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 142 APPLGLEGLREIRELVNIPVVA--------IGGINLEN-----VPEVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred CCccCHHHHHHHHHhCCCCEEE--------EcCCCHHH-----HHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHh
Confidence 1111111111233333499775 34444444 5567889999999887777788899999988877654
No 229
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=61.78 E-value=32 Score=35.98 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=45.0
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgr 338 (570)
..++...+++.|+|+|.+-.. +.+++.+..+++.....++.+.| +----.+|+.++++. +|+|.+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA--sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA--SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE--ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 456777888999999998765 67777766665543334544444 111124577777777 99999974
No 230
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=61.75 E-value=28 Score=36.19 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=45.0
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEcC
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIgr 338 (570)
...+++..+.+.|+|+|.+..+ .++++.++.+.+.....+++++| --|+ +|+.++++. +|+|.++.
T Consensus 191 ~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 191 DSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAA----AGGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEE----ECCCCHHHHHHHHHcCCcEEEECh
Confidence 4456667778999999999765 44666666665544333555555 2233 789999988 99997763
No 231
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.73 E-value=1.2e+02 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHhhhhhhcCCcEEEecCCC----------ChhHHHHHHHHHHhcCCCce
Q 008319 271 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIH 310 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~----------sa~dv~~vr~~l~~~~~~i~ 310 (570)
+.++.+.+.|.|+|-++.-. +.+++.++++.+++.|-.+.
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 55677789999999887422 56778888888888776544
No 232
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=61.61 E-value=2e+02 Score=29.83 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
.+...|+..|.++++. .|..+........-..|++.+...++ +.| -++.+...++.++-... +.
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~-~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK-LL 136 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC-CC
Confidence 4556899999999875 23333333456678899998887542 122 24555555554443222 22
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+ |.+. . .+.--...-+.++.++++ . .||+.+-+|.++.-++ .+.|...|+++-+..
T Consensus 137 ~~-~~~~----~-~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 137 DQ-FNNP----D-NPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred Cc-cCCc----c-cHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 22 1111 1 111012234557777775 4 7888888888875554 457999999999864
No 233
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=61.34 E-value=23 Score=36.67 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=46.7
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcch--hhhHHHHHHh-CCEEEEc
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVA 337 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDgImIg 337 (570)
+-+..+++..++..|+|+|.+..+ ++++++++.+++... .++++.| --| .+|+.++++. +|+|.++
T Consensus 187 ev~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~a----sGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 187 EVETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEA----SGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred ecCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEc
Confidence 334567777788899999999776 567777777766543 3444433 233 4799999988 9999885
No 234
>PRK09224 threonine dehydratase; Reviewed
Probab=61.29 E-value=1.4e+02 Score=33.89 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
.-+...|+..|.|+.+. .|. .+....+...-..|++.++.. ...-++.+...++.++ +...+
T Consensus 81 ~avA~aa~~lGi~~~Iv---------mP~--~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~~~ 142 (504)
T PRK09224 81 QGVALSAARLGIKAVIV---------MPV--TTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGLTF 142 (504)
T ss_pred HHHHHHHHHcCCCEEEE---------ECC--CCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCCEE
Confidence 35666899999998864 121 122223445678899977763 2345777777666654 22222
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHH----HhcCCCCeEEEEeCCHH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVIL----SHYRPSSTIFAFTNQER 499 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~l----s~~RP~~pIiavt~~~~ 499 (570)
..+ |.+. .....-..-+.++.++++ . .|+|..-+|.++--+ ..++|...||+|-+...
T Consensus 143 v~~-f~~~------~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~ 207 (504)
T PRK09224 143 IHP-FDDP------DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDS 207 (504)
T ss_pred eCC-CCCc------HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 221 2111 111222223456677764 4 788888888766554 46789999999998543
No 235
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=61.28 E-value=27 Score=34.78 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=43.7
Q ss_pred eeecCCCEEEEEEec--CCCC--c-cEEEeccCCcc--cccccCCEEEEe--CCeeEEEEEEEeCCeEEE
Q 008319 179 IILKEGQEFNFTIKR--GVST--E-DTVSVNYDDFV--NDVEVGDILLVD--GGMMSLAVKSKTKDLVKC 239 (570)
Q Consensus 179 i~l~~G~~v~lt~~~--~~~~--~-~~i~v~~~~l~--~~v~~Gd~I~iD--DG~i~l~V~~~~~~~i~~ 239 (570)
.-++.|++++++... .++. + ....++.+.|. ..+++|+.++.+ +|.+.++|++++++.|+.
T Consensus 50 ~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~v 119 (196)
T PRK10737 50 EGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVVV 119 (196)
T ss_pred cCCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEEE
Confidence 356899999998762 2332 2 24456666663 358999999874 888999999999988543
No 236
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=61.24 E-value=1.6e+02 Score=28.33 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=74.8
Q ss_pred HHhhhhhhcCCcEEEe-----cCCCCh----hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCC
Q 008319 271 EDIKFGVDNQVDFYAV-----SFVKDA----KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~-----SfV~sa----~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGD 340 (570)
+.++.+.+.|+|+|.+ +|+.+. +.+.++++.. +..+.+-.++.++ .+.++.+.+. +||+.|-=
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~dgv~vh~-- 88 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGADIITFHA-- 88 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCCCEEEECc--
Confidence 5567788899999988 776433 3344444332 2223344566554 3346666666 89987731
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc--cccC-CCCHHH
Q 008319 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLK 417 (570)
Q Consensus 341 Lg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ETA~-G~yP~e 417 (570)
+.. ....+.++.+++.|..+++.+. +. +..| ....+..++|.+++.+ .|.. ..++..
T Consensus 89 -----~~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-~~~~---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 148 (211)
T cd00429 89 -----EAT---DHLHRTIQLIKELGMKAGVALN--------PG-TPVE---VLEPYLDEVDLVLVMSVNPGFGGQKFIPE 148 (211)
T ss_pred -----cch---hhHHHHHHHHHHCCCeEEEEec--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCCcccCHH
Confidence 111 1224558888999998887521 11 1111 2233445578776532 1222 357777
Q ss_pred HHHHHHHHHHHhh
Q 008319 418 AVKVMHTVALRTE 430 (570)
Q Consensus 418 aV~~m~~I~~~aE 430 (570)
..+.++++.+...
T Consensus 149 ~~~~i~~~~~~~~ 161 (211)
T cd00429 149 VLEKIRKLRELIP 161 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665553
No 237
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=61.19 E-value=66 Score=33.82 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=42.2
Q ss_pred HHhhhhhhcCCcEEEe------------------cCCCChhHHHHHHHHHHh-cCCCceEEEeecCc-------chhhhH
Q 008319 271 EDIKFGVDNQVDFYAV------------------SFVKDAKVVHELKDYLKS-CNADIHVIVKIESA-------DSIPNL 324 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~------------------SfV~sa~dv~~vr~~l~~-~~~~i~IiaKIEt~-------~gv~Nl 324 (570)
+.++...+.|+.+|.+ ..+...+.+..++..... .+.++.|+|..|.. ++++..
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra 175 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRA 175 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHH
Confidence 3445556788888877 223333444556555544 36679999997764 445555
Q ss_pred HHHHHh-CCEEEEc
Q 008319 325 HSIISA-SDGAMVA 337 (570)
Q Consensus 325 deIl~~-sDgImIg 337 (570)
..-.++ +|+||+-
T Consensus 176 ~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 176 EAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHcCCCEEEec
Confidence 555555 8999994
No 238
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=61.17 E-value=14 Score=39.60 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=37.2
Q ss_pred ecCCCCCCHHHHHHHHHhCC--cEEEEecCCCChHHHHHHHHHHHH
Q 008319 106 TIGPSTSSREMIWKLAEEGM--NVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 106 TiGPs~~~~e~l~~li~~Gm--~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
.+|.+.++.+.+.+|+++|+ |+.=|+.+||..+..+++|+.||+
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 44555567788999999966 999999999999998889888885
No 239
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.09 E-value=54 Score=29.07 Aligned_cols=67 Identities=7% Similarity=0.123 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE
Q 008319 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 369 (570)
Q Consensus 290 ~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi 369 (570)
.|.--+..+++++++.|-+..+.+ -++..+++.+.-.|.|+++ +.+....+++-+.|...|+||.
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a-----~~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAA-----GAYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEE-----eeHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEE
Confidence 345556789999999888866555 3555677777778999998 5788889999999999999998
Q ss_pred EE
Q 008319 370 VA 371 (570)
Q Consensus 370 va 371 (570)
+-
T Consensus 77 ~I 78 (99)
T cd05565 77 TT 78 (99)
T ss_pred Ee
Confidence 63
No 240
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=61.03 E-value=21 Score=39.05 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=61.7
Q ss_pred hHHHhhhhhhcC-CcEEEecCCC--C---------------hhHHHHHHHHHHhcC--CCceEEEeecCcchhhhHHHHH
Q 008319 269 DWEDIKFGVDNQ-VDFYAVSFVK--D---------------AKVVHELKDYLKSCN--ADIHVIVKIESADSIPNLHSII 328 (570)
Q Consensus 269 D~~dI~~~~~~g-vd~I~~SfV~--s---------------a~dv~~vr~~l~~~~--~~i~IiaKIEt~~gv~NldeIl 328 (570)
+.+++..+++.+ +|+|.++-.. + ..-+.++.+++...+ .++.||+ .-|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 445666666655 9999988663 1 112334555565443 3577777 35777777887
Q ss_pred Hh----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 008319 329 SA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (570)
Q Consensus 329 ~~----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTq 373 (570)
+. +|++.+||.=|.. + --...++|+.-..|+++|||
T Consensus 302 kalaLGAd~V~ig~~~l~a-l--------~c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIA-L--------GCIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHh-c--------chHHHHhcCCCCCCcccccC
Confidence 76 8999999865532 1 11345889999999999998
No 241
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=60.97 E-value=2.2e+02 Score=29.98 Aligned_cols=52 Identities=15% Similarity=0.014 Sum_probs=40.3
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcC
Q 008319 102 KIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFE 155 (570)
Q Consensus 102 KIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~ 155 (570)
.+..-+=- + +.+.+++.+++|.+..-+..||-+.++..+.-+.+++....++
T Consensus 79 PV~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~g 130 (293)
T PRK07315 79 PVAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKG 130 (293)
T ss_pred cEEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 34555522 3 6889999999999999999999999887777777777666555
No 242
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.37 E-value=37 Score=35.64 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=50.2
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcC--CCceEEEeecCcchh--hhHHHHHHh-CCEEEEcC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN--ADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~--~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIgr 338 (570)
..+++..+++.|+|.|.+=.. +++++.++.+++...+ .++ +||-.-|+ +|+.++++. +|+|.+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV----KIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE----EEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 567778889999999999876 7999999988887766 343 35544454 588888888 89999873
No 243
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=60.29 E-value=1.5e+02 Score=30.76 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+.+..++++.++. .+.+++-+-.+..++-+.+ .+|.+.||-+++.. ..+++.+.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 34566777877554 5678887777766655554 57999999776632 44677777899999986
Q ss_pred ccchhhhhcCCCcChHHHhHHHHHHH-hCccEEEe--cccccCCCCHHHHHHH
Q 008319 372 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVML--SGETAHGKFPLKAVKV 421 (570)
Q Consensus 372 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmL--s~ETA~G~yP~eaV~~ 421 (570)
|.|. .+-.|+...+..+. .|..-++| .|=....+||.+.|.+
T Consensus 141 ~G~~--------~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 141 RGMS--------ATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred CCCC--------CCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 5433 35567666666665 56644444 2221345888665554
No 244
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=60.27 E-value=1.3e+02 Score=33.79 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=66.5
Q ss_pred hHHHhhhhhhcCCcEEEec-CCCChhHHHHHHHH-H--HhcC---CCceEEEeecCcchhhh---------HHHHHHh--
Q 008319 269 DWEDIKFGVDNQVDFYAVS-FVKDAKVVHELKDY-L--KSCN---ADIHVIVKIESADSIPN---------LHSIISA-- 330 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~S-fV~sa~dv~~vr~~-l--~~~~---~~i~IiaKIEt~~gv~N---------ldeIl~~-- 330 (570)
+.+.++..++.|++.|..| |..-...+...+.. + ...+ ....|++|+-+++-... ++.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 3455677788999988776 22211122122211 1 0000 12479999876654433 1111111
Q ss_pred --------------CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH------c--CCCEEEEccchhhhhcCCCcChHH
Q 008319 331 --------------SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS------M--QKPVIVATNMLESMIDHPTPTRAE 388 (570)
Q Consensus 331 --------------sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~------~--gKPvivaTqmLeSM~~~~~PtrAE 388 (570)
+|.|.+. .|=|-+.+--....+.-.|++.... + ..|||.|.- .-|
T Consensus 169 it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGG---------I~t--- 235 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGG---------IGT--- 235 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCC---------CCC---
Confidence 5888887 7776666533333333344432222 2 356887633 323
Q ss_pred HhHHHHHHHhCccEEEe
Q 008319 389 VSDIAIAVREGADAVML 405 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmL 405 (570)
-.+++.++..|+|+|.+
T Consensus 236 ~~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 236 PEAAAAAFMLGADFIVT 252 (444)
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 34688999999999985
No 245
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=60.14 E-value=2.2e+02 Score=29.60 Aligned_cols=145 Identities=17% Similarity=0.209 Sum_probs=73.2
Q ss_pred hhhHH-HhhhhhhcC-CcEEEec------------CCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--
Q 008319 267 DKDWE-DIKFGVDNQ-VDFYAVS------------FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-- 330 (570)
Q Consensus 267 ~kD~~-dI~~~~~~g-vd~I~~S------------fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-- 330 (570)
..|.. ..+.+.+.| +|+|-+. +-++.+.+.++-+.+.+.- +++|++||= + .++++.++++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~-~-~~~~~~~~a~~l~ 179 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLT-P-NVTDIVEIAKAAE 179 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcC-C-CchhHHHHHHHHH
Confidence 34443 334555677 9998552 2233343444333343322 688999994 2 23455555543
Q ss_pred ---CCEEEE-----cCC-Ccc-------cCC----CCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHh
Q 008319 331 ---SDGAMV-----ARG-DLG-------AEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390 (570)
Q Consensus 331 ---sDgImI-----grG-DLg-------~ei----g~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~ 390 (570)
+|+|.+ ++. |+- ... |....+...+.+-+..+..+.|+|.. ...-+ ..
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~---------GGI~~---~~ 247 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGM---------GGISS---AE 247 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEE---------CCCCC---HH
Confidence 688865 211 221 111 11112223333333344458998863 33333 34
Q ss_pred HHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 008319 391 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 391 Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (570)
|+..++..|+|+|++..---. -| .+.+++..+.+..
T Consensus 248 da~~~l~aGAd~V~igr~ll~--~P----~~~~~i~~~l~~~ 283 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTANFY--DP----YAFPKIIEGLEAY 283 (301)
T ss_pred HHHHHHHcCCCceeEcHHHhc--Cc----HHHHHHHHHHHHH
Confidence 677778899999998633222 35 3344444444443
No 246
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=59.96 E-value=1.7e+02 Score=31.49 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCCCC-CCHHHHHHHHHHHHHHc
Q 008319 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSM 364 (570)
Q Consensus 290 ~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~eig~-~~v~~~qk~Ii~~c~~~ 364 (570)
.+.+++..+++.. +.+++.| ++.+.+++..+ +|+|.|. +--|..+.. .....+...+....++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 3445555555433 5688888 33455555444 8998886 222444321 22233444554444333
Q ss_pred --CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 365 --QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 365 --gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..|+|.+.- . ..-.|++.++..|+|++.+.
T Consensus 269 ~~~~~vi~~GG---------I---r~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDGG---------V---RRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeCC---------C---CCHHHHHHHHHcCCCEEEEC
Confidence 378876422 2 22568999999999999974
No 247
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=59.80 E-value=20 Score=40.89 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=73.2
Q ss_pred CCcEEEecCCCChhHHHHHHHHHHh-------cCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCc-------
Q 008319 280 QVDFYAVSFVKDAKVVHELKDYLKS-------CNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDL------- 341 (570)
Q Consensus 280 gvd~I~~SfV~sa~dv~~vr~~l~~-------~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDL------- 341 (570)
+--|+.+|++++..+++-..+.+.. ...-+++-+.|||..|.-|++||+-+ +=|+=.||=|.
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 4457889999999998866554432 22358999999999999999999987 33555555332
Q ss_pred ---------------ccCCCCCCHHHHHHHHHHHHHHcCCCEEE--Eccchh--hhhcCCCcChHHHhHHHHHHHhCccE
Q 008319 342 ---------------GAELPIEDVPLLQEDIIRRCRSMQKPVIV--ATNMLE--SMIDHPTPTRAEVSDIAIAVREGADA 402 (570)
Q Consensus 342 ---------------g~eig~~~v~~~qk~Ii~~c~~~gKPviv--aTqmLe--SM~~~~~PtrAEv~Dv~nav~~G~D~ 402 (570)
+++- +=+....+..+..|++.|-..+. +.++-- -|..++.--..=..|=-+-+.+|+|+
T Consensus 283 ~~~~~~~vlPdR~~v~m~~--pfm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg 360 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQ--PFMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDG 360 (526)
T ss_dssp TCCGCCBB---GGGGGCGS--HHHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SE
T ss_pred hhhCCCccccccccccccC--HHHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 2222 23667788999999998865431 111110 01111111111123335678899999
Q ss_pred EEe
Q 008319 403 VML 405 (570)
Q Consensus 403 vmL 405 (570)
-+.
T Consensus 361 ~WV 363 (526)
T PF01274_consen 361 AWV 363 (526)
T ss_dssp EEE
T ss_pred ccc
Confidence 888
No 248
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=59.79 E-value=1.6e+02 Score=29.73 Aligned_cols=121 Identities=9% Similarity=0.068 Sum_probs=68.9
Q ss_pred HHhhhhhhcCCcEEEecC------C--CChhHHHHHHHHHHhcCCCceEEEe--------e------cCcchhhhHHHHH
Q 008319 271 EDIKFGVDNQVDFYAVSF------V--KDAKVVHELKDYLKSCNADIHVIVK--------I------ESADSIPNLHSII 328 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~Sf------V--~sa~dv~~vr~~l~~~~~~i~IiaK--------I------Et~~gv~NldeIl 328 (570)
+.++.+.+.|+++|-+.+ . -+..++.++++.+++.|-.+..+.- + +..++++.+...+
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 96 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAM 96 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHH
Confidence 566778899999988742 1 2235678889988887765433221 1 1123344454444
Q ss_pred Hh-----CCEEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEccchhhhh---cCCCcChHHHhHHHHHH
Q 008319 329 SA-----SDGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMI---DHPTPTRAEVSDIAIAV 396 (570)
Q Consensus 329 ~~-----sDgImIgrGDLg~eig~----~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~---~~~~PtrAEv~Dv~nav 396 (570)
+. ++.|.+.+|..+..-.. +.+....+++...|.+.|..+.+ |.|. .+..+|.++..++.+.+
T Consensus 97 ~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i-----E~~~~~~~~~~~t~~~~~~l~~~~ 171 (275)
T PRK09856 97 DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL-----EPLTPYESNVVCNANDVLHALALV 171 (275)
T ss_pred HHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE-----ecCCCCcccccCCHHHHHHHHHHc
Confidence 44 67888877755422111 23445567788888888876654 3321 12234555555555544
No 249
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=59.74 E-value=57 Score=33.77 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=56.2
Q ss_pred HHHHHh-CCEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCcc
Q 008319 325 HSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 401 (570)
Q Consensus 325 deIl~~-sDgImIgrGDLg--~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D 401 (570)
+..++. +||+++. |--| ..+..++-..+.+..++.++ -..||+.- .....++.-+.-.-.|-..|+|
T Consensus 26 ~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~g--------v~~~s~~~~i~~a~~a~~~Gad 95 (285)
T TIGR00674 26 DFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAG--------TGSNATEEAISLTKFAEDVGAD 95 (285)
T ss_pred HHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEe--------CCCccHHHHHHHHHHHHHcCCC
Confidence 444444 8999983 2211 22333333333444444432 23677753 1222333335555677889999
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 008319 402 AVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 402 ~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
++|+..=.-...-+-+.++....|+..++-
T Consensus 96 ~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 96 GFLVVTPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred EEEEcCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 999986554444467888999999988753
No 250
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=59.64 E-value=1.9e+02 Score=30.07 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC-HHHHHHHHHHHHHHhhcCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y-P~eaV~~m~~I~~~aE~~~~ 434 (570)
-+...|+..|.|+.+. .|..+....+...-..|++.+..-+ .| -.++++...++..+-..+++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCeEe
Confidence 4556889999998774 3433334456667789999887643 22 23566655555443211111
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHH----HhcCCCCeEEEEeCCH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVIL----SHYRPSSTIFAFTNQE 498 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~l----s~~RP~~pIiavt~~~ 498 (570)
..+ |.+. ..+..-....+.++.++++ . .||+.+-+|.++--+ ..++|...|+++.+..
T Consensus 136 ~~~-~~~~-----~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 136 LDQ-FENP-----ANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred cCC-CCCc-----hhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 111 1110 0111112334557778876 4 788888888887444 4567999999999964
No 251
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=59.17 E-value=48 Score=28.91 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 294 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 294 dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
-+..+++++++.|-+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+||.+-
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEEe
Confidence 45678899988877755444 4666777777778999998 578889999999999999999863
No 252
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=59.11 E-value=98 Score=32.57 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=62.4
Q ss_pred HHhhhhhhcCCcEEEec------CCCChhHHHH-HHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.++|.++.|+|+|.+. +--|.++-.+ ++...+..+.++++|+-+= |.++++....--+. +||+|+-+-
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45577889999988664 2233344333 4455566678888999773 44555554444444 899999653
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 388 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE 388 (570)
.+-- .+.+.+...-+.| |.+.+.|+|+. +.|..|..+
T Consensus 109 yY~k-~~~~gl~~hf~~i---a~a~~lPvilY--------N~P~~tg~~ 145 (299)
T COG0329 109 YYNK-PSQEGLYAHFKAI---AEAVDLPVILY--------NIPSRTGVD 145 (299)
T ss_pred CCcC-CChHHHHHHHHHH---HHhcCCCEEEE--------eCccccCCC
Confidence 3321 1123344444444 44559999974 456555554
No 253
>PRK08638 threonine dehydratase; Validated
Probab=59.04 E-value=1.4e+02 Score=31.74 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
.-+...|+..|.|+.+. .|....-..+...-..|++.++.. ....++++.+.+++.+-. .++
T Consensus 88 ~alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~g-~~~ 149 (333)
T PRK08638 88 QGVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEEG-RTF 149 (333)
T ss_pred HHHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEE
Confidence 34566899999999874 222222334555667899988752 234678888777776532 222
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcC-C-cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN-T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 498 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a-~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~ 498 (570)
..+ |.+. ...+.-..-+.++.++++ . .||+..-+|.+..-++++ .|.+.||++-|..
T Consensus 150 ~~~-~~~~------~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 150 IPP-YDDP------KVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred cCc-CCCc------chhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 122 2111 011111223445555554 4 899999999998887765 8999999998864
No 254
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=58.93 E-value=1.3e+02 Score=32.28 Aligned_cols=131 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred hhhHHHhhhhhhcCCcEEEecCC----------CChhHHHH----HHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHE----LKDYLKSCNADIHVIVKIESADSIPNLHSIISA-- 330 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV----------~sa~dv~~----vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-- 330 (570)
..|...+..-+..++|++-+.|- +..+.+.+ +++.+.....+++|++||---...+++.++++.
T Consensus 156 ~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 156 VDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred HHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34543333223446999877652 12233333 333332110148999999632222345555554
Q ss_pred ---CCEEEEcCCC-----ccc-----CC-CCC---CHHHHHHHHHHHHHHc--CCCEEEEccchhhhhcCCCcChHHHhH
Q 008319 331 ---SDGAMVARGD-----LGA-----EL-PIE---DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSD 391 (570)
Q Consensus 331 ---sDgImIgrGD-----Lg~-----ei-g~~---~v~~~qk~Ii~~c~~~--gKPvivaTqmLeSM~~~~~PtrAEv~D 391 (570)
+|||.+-=+- +.. .. ++. .-+...+.+-+..+.. +.|+|-. ...-+ ..|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~---------GGI~s---~ed 303 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGV---------GGIDS---AED 303 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEE---------CCCCC---HHH
Confidence 7888875321 100 01 111 1223333443444444 5788754 33333 346
Q ss_pred HHHHHHhCccEEEecccc
Q 008319 392 IAIAVREGADAVMLSGET 409 (570)
Q Consensus 392 v~nav~~G~D~vmLs~ET 409 (570)
+..++..|+|+|++..-.
T Consensus 304 a~e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 304 AYEKIRAGASLVQIYSGL 321 (344)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 778888999999996443
No 255
>PRK15452 putative protease; Provisional
Probab=58.77 E-value=36 Score=38.01 Aligned_cols=85 Identities=12% Similarity=0.162 Sum_probs=54.7
Q ss_pred ceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCC---CCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCc
Q 008319 309 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP---IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP 384 (570)
Q Consensus 309 i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig---~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~P 384 (570)
+.+.|...+.+++ ..-+.. +|.|.+|-..++.-.. +. . .-.++.++.|+++|+.++++++. .|
T Consensus 4 peLlapag~~e~l---~aAi~~GADaVY~G~~~~~~R~~~~~f~-~-edl~eav~~ah~~g~kvyvt~n~--------i~ 70 (443)
T PRK15452 4 PELLSPAGTLKNM---RYAFAYGADAVYAGQPRYSLRVRNNEFN-H-ENLALGINEAHALGKKFYVVVNI--------AP 70 (443)
T ss_pred cEEEEECCCHHHH---HHHHHCCCCEEEECCCccchhhhccCCC-H-HHHHHHHHHHHHcCCEEEEEecC--------cC
Confidence 3455655554443 333444 9999999877775321 21 1 34677899999999999998653 34
Q ss_pred ChHHHhHH----HHHHHhCccEEEec
Q 008319 385 TRAEVSDI----AIAVREGADAVMLS 406 (570)
Q Consensus 385 trAEv~Dv----~nav~~G~D~vmLs 406 (570)
...|.... ..+...|+|+++.+
T Consensus 71 ~e~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 71 HNAKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 44454443 34446799999986
No 256
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=58.67 E-value=13 Score=41.87 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=37.7
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 105 ~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
+.+|..-++.+.++.|+++|+++.=++.+||......+.|+.||+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467876677899999999999999999999988776667777765
No 257
>PRK15447 putative protease; Provisional
Probab=58.53 E-value=56 Score=34.35 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=48.6
Q ss_pred CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 331 sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.++++|+-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999996666654443 23556788999999999999986421 112447777888888899988753
No 258
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=58.39 E-value=1.8e+02 Score=28.07 Aligned_cols=103 Identities=20% Similarity=0.223 Sum_probs=57.7
Q ss_pred hHHHhhhhhhcCCcEEEecCCC-ChhH----HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcc
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVK-DAKV----VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG 342 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~-sa~d----v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg 342 (570)
-.+.++.+++.|+++|-+-.-. +..+ ++++++.... .++.++.. +.++...+. +||+.++-.|+.
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-------~~~~~a~~~gad~vh~~~~~~~ 93 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRR--YGVPLIVN-------DRVDLALAVGADGVHLGQDDLP 93 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH--hCCeEEEe-------ChHHHHHHcCCCEEecCcccCC
Confidence 3466778889999998664321 1122 2222232222 33445442 355555555 899887533221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 343 AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 343 ~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
...++..+..++.++++ .+|..| +..+...|+|.+.++
T Consensus 94 ------------~~~~~~~~~~~~~~g~~-----------~~t~~e---~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 94 ------------VADARALLGPDAIIGLS-----------THTLEE---AAAALAAGADYVGVG 131 (212)
T ss_pred ------------HHHHHHHcCCCCEEEEe-----------CCCHHH---HHHHhHcCCCEEEEC
Confidence 12233444567777765 235444 567778999999985
No 259
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=58.36 E-value=1.3e+02 Score=31.18 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=86.7
Q ss_pred CCCChhhHHHh-hhhhh--cCCcEEEecCCCChhHHHHHHHHHHhcCC-CceEEEeecCcchhhhHHHHHHh--------
Q 008319 263 PSITDKDWEDI-KFGVD--NQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISA-------- 330 (570)
Q Consensus 263 p~lt~kD~~dI-~~~~~--~gvd~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IiaKIEt~~gv~NldeIl~~-------- 330 (570)
|..|+.|.+.+ +.|.+ +++..|+++ +..+..+++.|...+. ++++.+=|==|.|-...+.-+..
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 67788887544 56777 588888776 6788888998865444 68888888777776655544433
Q ss_pred CCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCC--EEEEccchhhhhcCCCcChHH-HhHH-HHHHHhCc
Q 008319 331 SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKP--VIVATNMLESMIDHPTPTRAE-VSDI-AIAVREGA 400 (570)
Q Consensus 331 sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~gKP--vivaTqmLeSM~~~~~PtrAE-v~Dv-~nav~~G~ 400 (570)
+|-| |+-+.++. +.+..-.+.+.+.|.. |+| ||+ ..+.-+..| +... --++..|+
T Consensus 97 AdEi-----D~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIl---------Et~~L~~ee~i~~a~~~a~~aGA 161 (257)
T PRK05283 97 ADEV-----DVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVII---------ETGELKDEALIRKASEIAIKAGA 161 (257)
T ss_pred CCEE-----eeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEE---------eccccCCHHHHHHHHHHHHHhCC
Confidence 2211 11122222 2333444555555532 455 454 334444443 4433 35788899
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 401 DAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
|+|=-|.-=+.+.-.++.|+.|.+.+++
T Consensus 162 DFVKTSTGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 162 DFIKTSTGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred CEEEcCCCCCCCCCCHHHHHHHHHHHHh
Confidence 9986542211122347899999888765
No 260
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=58.36 E-value=1.1e+02 Score=32.13 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=81.0
Q ss_pred HHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEcc
Q 008319 299 KDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATN 373 (570)
Q Consensus 299 r~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi----vaTq 373 (570)
+.+.++....+++........-++.+..-++. .+-+|+. |-.+|+++=...-+++++.|++.|.+|= .-..
T Consensus 68 ~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg 143 (285)
T PRK07709 68 KALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGG 143 (285)
T ss_pred HHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC
Confidence 33333333347899999998866666666655 7799995 3457888877888999999999999871 1000
Q ss_pred chhhhhcCCCcChHHHhHHHHHHH-hCccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 374 MLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
-=+..... .-...+..+...++. -|+|++-.|--|+.|.| |.--.+.+.+|..+.
T Consensus 144 ~ed~~~~~-~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 144 QEDDVIAE-GVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred ccCCcccc-cccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
Confidence 00000000 000112344556664 59999999999999999 555566677765544
No 261
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=58.30 E-value=1.6e+02 Score=27.56 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=64.5
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcc---cCCCCC
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG---AELPIE 348 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg---~eig~~ 348 (570)
++.+.+.|+|++-++.-. .....++... +....+-+-+.|. +.+.+.... +|.|++++..=+ .....+
T Consensus 65 ~~~a~~~g~~~vh~~~~~--~~~~~~~~~~---~~~~~~g~~~~t~---~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~ 136 (196)
T cd00564 65 VDLALAVGADGVHLGQDD--LPVAEARALL---GPDLIIGVSTHSL---EEALRAEELGADYVGFGPVFPTPTKPGAGPP 136 (196)
T ss_pred HHHHHHcCCCEEecCccc--CCHHHHHHHc---CCCCEEEeeCCCH---HHHHHHhhcCCCEEEECCccCCCCCCCCCCC
Confidence 345678899988766422 1233334332 2234444444443 333333433 899999754211 111011
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHH
Q 008319 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (570)
.-....+++ +.....|++.+.. .+.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 137 ~~~~~~~~~---~~~~~~pv~a~GG----------i~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 137 LGLELLREI---AELVEIPVVAIGG----------ITPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCHHHHHHH---HHhCCCCEEEECC----------CCHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 111222222 2235789887522 2322 45566778999998875433334577776655
No 262
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=58.26 E-value=1.3e+02 Score=32.44 Aligned_cols=126 Identities=17% Similarity=0.311 Sum_probs=78.6
Q ss_pred HHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE-Eccch--
Q 008319 300 DYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML-- 375 (570)
Q Consensus 300 ~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv-aTqmL-- 375 (570)
.+.++.+..+++...+....-++.+.+-++. .+.||+.- -.+|+++=...-+++++.|+..|.+|=- -..+-
T Consensus 77 ~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~----S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ 152 (321)
T PRK07084 77 EYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDG----SHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGV 152 (321)
T ss_pred HHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 3333334468899999998777766666655 77999963 3468887778889999999999988620 00000
Q ss_pred hhhhcCCCcChHHHhHHHHHHH-hCccEEEecccccCCCCHH--------HHHHHHHHHHHHh
Q 008319 376 ESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 429 (570)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP~--------eaV~~m~~I~~~a 429 (570)
|--.....-......+...++. -|+|++-.+--|+.|.|+- --...+.+|-.++
T Consensus 153 ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 153 EDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred cCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 0000000000112334556665 4999999999999999963 2344555554444
No 263
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=58.03 E-value=95 Score=32.04 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHhhhhhhcCCcEEEecC------C-CChhHHHHHHHHHHhcCCCceEEEeecC---cchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVSF------V-KDAKVVHELKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~Sf------V-~sa~dv~~vr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.+++.++.|+|++.+.= - ...|..+-++..++..+.+++||+-+-. .++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 556788899999987741 1 2222223334445556778999998854 4444444444444 899998754
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+.. ..-..+-+..-..|...++|+++.
T Consensus 106 ~~~~----~s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 106 YYFK----PSQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp TSSS----CCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred cccc----chhhHHHHHHHHHHhhcCCCEEEE
Confidence 3321 122234445555556788999975
No 264
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=58.02 E-value=40 Score=28.81 Aligned_cols=55 Identities=20% Similarity=0.427 Sum_probs=38.5
Q ss_pred cEEEeccC-CcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEe-------CcEeccCccccc
Q 008319 199 DTVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVD-------GGELKSRRHLNV 255 (570)
Q Consensus 199 ~~i~v~~~-~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~-------gG~l~s~KgIn~ 255 (570)
-.+.+..+ ..+..+.+||.|-+|+ +.|+|.++.++.+...+.. =|.++.+.-||+
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 34555555 7789999999999998 8999999999998877652 344444455554
No 265
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.62 E-value=45 Score=35.16 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=48.2
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEcC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIgr 338 (570)
..+++..+++.|+|.|.+=... ++++++.-+.++..+.++ +||---|+ +|+.+.++. +|.|.+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 4456777889999999999774 888877777666555554 35544444 588998888 99999874
No 266
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=57.57 E-value=27 Score=33.88 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=46.7
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcch--hhhHHHHHHh-CCEEEEc
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVA 337 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDgImIg 337 (570)
.+.+..+++.|+|.|.+=.. ++++++++.+.+...+.++ +||-.-| .+|+.++.+. +|+|.+|
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v----~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRV----KIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTS----EEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcE----EEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 34566788999999999876 7899999888887777774 4444444 4589999988 7999987
No 267
>PRK00208 thiG thiazole synthase; Reviewed
Probab=57.57 E-value=2e+02 Score=29.92 Aligned_cols=72 Identities=29% Similarity=0.293 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHH
Q 008319 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 424 (570)
Q Consensus 345 ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~ 424 (570)
.|+.+ +...+.+.+. .+.|||+. ...-| -+|++.++..|+|++++.+--+..+.|..-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIve---------aGI~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIVD---------AGIGT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 34444 4454555443 47899863 33433 357889999999999999888888899998888887
Q ss_pred HHHHhhcC
Q 008319 425 VALRTESS 432 (570)
Q Consensus 425 I~~~aE~~ 432 (570)
-++.-...
T Consensus 223 Av~aGr~a 230 (250)
T PRK00208 223 AVEAGRLA 230 (250)
T ss_pred HHHHHHHH
Confidence 77655543
No 268
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=57.39 E-value=1.3e+02 Score=32.67 Aligned_cols=93 Identities=24% Similarity=0.297 Sum_probs=51.4
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHc--CC
Q 008319 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSM--QK 366 (570)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIg-rGDLg~eig~~~v~~~qk~Ii~~c~~~--gK 366 (570)
+.+++..+++.. +.+|++|.. ...+......+. +|+|.+. -| |..+. ..+.....+.+.+... ..
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~i 277 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGI--QSPEDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHRV 277 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecC--CCHHHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCCC
Confidence 667777777654 467889832 122333333333 8999883 11 22221 1111112222223333 47
Q ss_pred CEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 367 PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
|+|.. ...- ...|+..++..|+|+||+.
T Consensus 278 ~vi~d---------GGIr---~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 278 PIIFD---------SGVR---RGEHVFKALASGADAVAVG 305 (351)
T ss_pred eEEEE---------CCCC---CHHHHHHHHHcCCCEEEEC
Confidence 88864 3332 2568999999999999984
No 269
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=57.38 E-value=1.9e+02 Score=30.09 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=83.2
Q ss_pred CCCChhhHHHhhhhhhcCCcEEEecCCC-------------ChhHH-HHHHHHHHhcCCCceEEEeec------Cc-chh
Q 008319 263 PSITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVV-HELKDYLKSCNADIHVIVKIE------SA-DSI 321 (570)
Q Consensus 263 p~lt~kD~~dI~~~~~~gvd~I~~SfV~-------------sa~dv-~~vr~~l~~~~~~i~IiaKIE------t~-~gv 321 (570)
..+|-+|.--.+.+-+.|+|.|.++.-- +-++. ..++. +.+.-....|++=++ ++ +++
T Consensus 18 ~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~-V~r~~~~p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 18 VMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKA-VARGAPRALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHH-HHhcCCCCcEEEeCCCCCccCCHHHHH
Confidence 3456678777777778899998754110 11111 11222 222223346778665 22 357
Q ss_pred hhHHHHHH-h-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEccchhhh----hcCCCcChHH--H
Q 008319 322 PNLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESM----IDHPTPTRAE--V 389 (570)
Q Consensus 322 ~NldeIl~-~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi----vaTqmLeSM----~~~~~PtrAE--v 389 (570)
+|.-.+++ . ++||.|-=| ..+...|+++.++|.||+ +--|--..+ +......+++ +
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i 164 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLL 164 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHH
Confidence 78777787 4 889999533 256677888889999996 222211111 1111222222 5
Q ss_pred hHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 390 SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 390 ~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
.+.-.+...|+|+++|- |- |. +.+..|+++..
T Consensus 165 ~ra~a~~eAGA~~i~lE-----~v-~~---~~~~~i~~~l~ 196 (264)
T PRK00311 165 EDAKALEEAGAFALVLE-----CV-PA---ELAKEITEALS 196 (264)
T ss_pred HHHHHHHHCCCCEEEEc-----CC-CH---HHHHHHHHhCC
Confidence 66666678899999993 11 33 35566666554
No 270
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.34 E-value=1.1e+02 Score=31.76 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=57.0
Q ss_pred HHhhhhhhcC-CcEEEec------CCCChhHHHH-HHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcC
Q 008319 271 EDIKFGVDNQ-VDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 271 ~dI~~~~~~g-vd~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgr 338 (570)
+.+++.++.| +|+|.+. +.=+.++-.+ ++...+..+.++.|++.+- |.++++.....-+. +|++++.+
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5567888999 9998765 2233443333 4445555666789999885 44555555544444 89999976
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~-gKPviva 371 (570)
-..-- ..-+++...-+.+ |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~yf~~v---~~~~~~lpv~lY 134 (290)
T TIGR00683 105 PFYYK-FSFPEIKHYYDTI---IAETGGLNMIVY 134 (290)
T ss_pred CcCCC-CCHHHHHHHHHHH---HhhCCCCCEEEE
Confidence 43311 1112333333333 4445 6999874
No 271
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=57.29 E-value=2.6e+02 Score=29.61 Aligned_cols=138 Identities=19% Similarity=0.192 Sum_probs=75.8
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhC--CEEEEcC-CCcccCC--
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS--DGAMVAR-GDLGAEL-- 345 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~s--DgImIgr-GDLg~ei-- 345 (570)
...+...+.|+|+|..|.+.++. .++-...+.. .+.++++ +..||+|-+... -.=||+. |.-+..-
T Consensus 80 ~Ea~~L~~~GvDiIDeTe~lrPa--de~~~~~K~~-f~vpfma------d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~ 150 (287)
T TIGR00343 80 VEAQILEALGVDYIDESEVLTPA--DWTFHIDKKK-FKVPFVC------GARDLGEALRRINEGAAMIRTKGEAGTGNIV 150 (287)
T ss_pred HHHHHHHHcCCCEEEccCCCCcH--HHHHHHHHHH-cCCCEEc------cCCCHHHHHHHHHCCCCEEeccccCCCccHH
Confidence 33444457899999999998883 3333333332 2566776 556677666551 1223321 1100000
Q ss_pred --------------------CCCCHHHHH------HHHHHHH-HHcCCCEE-EEccchhhhhcCCCcChHHHhHHHHHHH
Q 008319 346 --------------------PIEDVPLLQ------EDIIRRC-RSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVR 397 (570)
Q Consensus 346 --------------------g~~~v~~~q------k~Ii~~c-~~~gKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~ 397 (570)
.-+++...- -..++.. +..+.||+ +| ....-|.+ |+..++.
T Consensus 151 ~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fA--------iGGI~TPe---dAa~~me 219 (287)
T TIGR00343 151 EAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFA--------AGGVATPA---DAALMMQ 219 (287)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEec--------cCCCCCHH---HHHHHHH
Confidence 000000000 0222232 23467887 33 33333443 4667788
Q ss_pred hCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
.|+|++++.+.-.....|.+..+.+.+....
T Consensus 220 lGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 220 LGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred cCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 9999999987766677899999887776644
No 272
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=57.05 E-value=1.8e+02 Score=31.18 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=89.6
Q ss_pred hhhHHHhhhhhhc--CCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH---h--C--CEEEEc
Q 008319 267 DKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---A--S--DGAMVA 337 (570)
Q Consensus 267 ~kD~~dI~~~~~~--gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~---~--s--DgImIg 337 (570)
++|.+-|+.+++. |-..+.-| -+.+.+.++-.+..+.|. .+++.- +.-++-+.++.. . . +-|++.
T Consensus 136 ~kD~evleaale~~~g~~pLInS--at~en~~~i~~lA~~y~~--~Vva~s--~~Dln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYGH--AVIAWS--PLDINLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhCC--eEEEEc--HHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 4688888777653 33345555 246667666666655443 344432 222444444433 3 3 567889
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHH----cCCCEEEEccc-----hhhhh-------cCCCcChH---HHhHHHHHHHh
Q 008319 338 RGDLGAELPIEDVPLLQEDIIRRCRS----MQKPVIVATNM-----LESMI-------DHPTPTRA---EVSDIAIAVRE 398 (570)
Q Consensus 338 rGDLg~eig~~~v~~~qk~Ii~~c~~----~gKPvivaTqm-----LeSM~-------~~~~PtrA---Ev~Dv~nav~~ 398 (570)
|+=..+..|.+.....+.+|=..+-+ .|-|+|..+-- =|+.. ..+.-.|+ |+.-...++.-
T Consensus 210 P~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ 289 (319)
T PRK04452 210 PTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLA 289 (319)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHh
Confidence 98887778888777777777666655 56676543210 02211 00011122 56667788889
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
|+|.++| +|| ++|+++++++...
T Consensus 290 ga~i~vm-------~hp-~s~~~~~~~~~~l 312 (319)
T PRK04452 290 GADIFMM-------RHP-ESVKTLKEIIDTL 312 (319)
T ss_pred cCcEEEE-------eCH-HHHHHHHHHHHHH
Confidence 9999999 588 8999998887653
No 273
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.00 E-value=87 Score=32.99 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=75.0
Q ss_pred CCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE-EEEccch---hhhhcC
Q 008319 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVATNML---ESMIDH 381 (570)
Q Consensus 307 ~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPv-ivaTqmL---eSM~~~ 381 (570)
..+++...+....-++.+.+-++. .+.||+ |-| .+|+++=...-+++++.|+.+|.+| .=-..+- +.....
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~---DgS-~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMI---DGA-ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE 148 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEE---eCC-CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc
Confidence 467888888887665555555555 789999 433 5788766677899999999999998 2111110 000000
Q ss_pred CCcChHHHhHHHHHHH-hCccEEEecccccCCCC--HHHHHHHHHHHHHH
Q 008319 382 PTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF--PLKAVKVMHTVALR 428 (570)
Q Consensus 382 ~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y--P~eaV~~m~~I~~~ 428 (570)
.-...+..+...++. -|+|++-.+--|+.|.| |---...+.+|...
T Consensus 149 -~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 149 -ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV 197 (283)
T ss_pred -ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh
Confidence 000112344566664 69999999999999999 43334556666544
No 274
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=56.98 E-value=80 Score=34.51 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=70.9
Q ss_pred cccccCCCccCCCCCChhhHHHhhhhhhcCCcEEEecC---CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHH
Q 008319 251 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF---VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI 327 (570)
Q Consensus 251 KgIn~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~Sf---V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeI 327 (570)
.|=.+|+..+ | .+...++ .+..|.|.+..+- +.+.+|+.++-+.|++.+...+|-.|+=.-..++.+...
T Consensus 150 ~GG~Lp~~KV-----~-~~ia~~R-~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~ 222 (368)
T PF01645_consen 150 EGGHLPGEKV-----T-EEIARIR-GVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG 222 (368)
T ss_dssp T--EE-GGG--------HHHHHHH-TS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH
T ss_pred Ccceechhhc-----h-HHHHHHh-CCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh
Confidence 3455666553 3 2444443 3567899887663 577788877777888888888999999666665555553
Q ss_pred H-Hh-CCEEEEcCCCccc---------CCCCCCHHHHHHHHHHHHHHcC---CCEEEEccchhhhhcCCCcChHHHhHHH
Q 008319 328 I-SA-SDGAMVARGDLGA---------ELPIEDVPLLQEDIIRRCRSMQ---KPVIVATNMLESMIDHPTPTRAEVSDIA 393 (570)
Q Consensus 328 l-~~-sDgImIgrGDLg~---------eig~~~v~~~qk~Ii~~c~~~g---KPvivaTqmLeSM~~~~~PtrAEv~Dv~ 393 (570)
+ +. +|.|.|.=++=|. +.|++ +.....++.+...+.| +..++++- .. ..-.|++
T Consensus 223 ~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~sG--------gl---~t~~dv~ 290 (368)
T PF01645_consen 223 AAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIASG--------GL---RTGDDVA 290 (368)
T ss_dssp HHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEES--------S-----SHHHHH
T ss_pred hhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEeC--------Cc---cCHHHHH
Confidence 2 22 8999998655433 23333 2333444445555444 33344322 22 2245899
Q ss_pred HHHHhCccEEEec
Q 008319 394 IAVREGADAVMLS 406 (570)
Q Consensus 394 nav~~G~D~vmLs 406 (570)
-++..|+|++.+.
T Consensus 291 kalaLGAD~v~ig 303 (368)
T PF01645_consen 291 KALALGADAVYIG 303 (368)
T ss_dssp HHHHCT-SEEE-S
T ss_pred HHHhcCCCeeEec
Confidence 9999999999774
No 275
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=56.65 E-value=7.7 Score=41.31 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=13.9
Q ss_pred hhhhcCCcEEEecCCCChhHH
Q 008319 275 FGVDNQVDFYAVSFVKDAKVV 295 (570)
Q Consensus 275 ~~~~~gvd~I~~SfV~sa~dv 295 (570)
.+.+.|+++| -|||.+-.|+
T Consensus 164 ~aa~AGa~~I-SPfVgRi~d~ 183 (313)
T cd00957 164 ACAEAGVTLI-SPFVGRILDW 183 (313)
T ss_pred HHHHcCCCEE-EeecchHHHh
Confidence 3557788765 6888877664
No 276
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=56.49 E-value=51 Score=34.22 Aligned_cols=71 Identities=20% Similarity=0.174 Sum_probs=47.6
Q ss_pred CChhhHHH-hhhhhhcC-CcEEEecCCCCh--hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcC
Q 008319 265 ITDKDWED-IKFGVDNQ-VDFYAVSFVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR 338 (570)
Q Consensus 265 lt~kD~~d-I~~~~~~g-vd~I~~SfV~sa--~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgr 338 (570)
|.+.+.++ ++.++..+ +|.|++|=..+. -|...++.+-+....-..+++ +--..+|+.++++.+||+.|+-
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS 228 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVAT 228 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECC
Confidence 55666644 45556666 999999987665 456666654332222233444 5556789999999999999984
No 277
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=56.48 E-value=60 Score=31.97 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.+.+.+.++.+-+.-+.... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3456667777777666554444333 5788888889988876321 356778899999999999875
No 278
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=56.44 E-value=2e+02 Score=31.01 Aligned_cols=82 Identities=26% Similarity=0.339 Sum_probs=57.0
Q ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCC
Q 008319 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (570)
Q Consensus 333 gImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (570)
.+|--+...|.-.|+. =|...+.+++. ...||++. ...-+ -+|++.|+..|+|++++..--+..
T Consensus 221 avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivd---------AGIg~---~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVD---------AGVGT---ASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEe---------CCCCC---HHHHHHHHHcCCCEEEEcceeccC
Confidence 4444345555555655 34555555554 56899874 33333 368999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 008319 413 KFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 413 ~yP~eaV~~m~~I~~~aE 430 (570)
+.|+.--+.|+.-.+.-.
T Consensus 285 ~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 285 KNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999988777776655444
No 279
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=55.95 E-value=8.1 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=19.8
Q ss_pred CcEEEEecC-CCChHHHHHHHHHHH
Q 008319 125 MNVARLNMS-HGDHASHQKTIDLVK 148 (570)
Q Consensus 125 m~v~RiN~s-Hg~~e~~~~~i~~ir 148 (570)
+.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678999998 999999998888774
No 280
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=55.87 E-value=85 Score=35.08 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=59.1
Q ss_pred hhhhHHHHHHh----CCEEEEcCCC-------cccCCCCCCHHHHHHHHH--HHHHHcCCCEEEEccchhhhhcCCCcCh
Q 008319 320 SIPNLHSIISA----SDGAMVARGD-------LGAELPIEDVPLLQEDII--RRCRSMQKPVIVATNMLESMIDHPTPTR 386 (570)
Q Consensus 320 gv~NldeIl~~----sDgImIgrGD-------Lg~eig~~~v~~~qk~Ii--~~c~~~gKPvivaTqmLeSM~~~~~Ptr 386 (570)
+..+.+|+.++ .|.|.+||== -...+|++.+..+++.+- ..++..++|++- +-.-.+
T Consensus 306 StHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVA--------IGGI~~-- 375 (437)
T PRK12290 306 STHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVA--------IGGIDQ-- 375 (437)
T ss_pred ecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEE--------ECCcCH--
Confidence 34566776665 7999999731 111233333333332221 122335789874 233333
Q ss_pred HHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 387 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 387 AEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
.++......|+|++-+.+.-.--..|.++++.+.++...
T Consensus 376 ---~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 376 ---SNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred ---HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 346677888999999888876778899999998887643
No 281
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=55.56 E-value=2.8e+02 Score=29.41 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCChhhHHHh--------hhhhhcCCcEEEecC-------------CCChhH----------------HHHHHHHHHhcC
Q 008319 264 SITDKDWEDI--------KFGVDNQVDFYAVSF-------------VKDAKV----------------VHELKDYLKSCN 306 (570)
Q Consensus 264 ~lt~kD~~dI--------~~~~~~gvd~I~~Sf-------------V~sa~d----------------v~~vr~~l~~~~ 306 (570)
.+|+.|++.+ +.+.+.|+|+|-+.. .+...| +..+|+ ..|
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~---~vG 219 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRA---VWP 219 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHH---HcC
Confidence 6788888766 345679999995542 222222 233333 346
Q ss_pred CCceEEEeecCc----ch--hhhHHHHHH----h-CCEEEEcCCCcccCC--CCCCHHHHHHHHHH-HHHHcCCCEEEEc
Q 008319 307 ADIHVIVKIESA----DS--IPNLHSIIS----A-SDGAMVARGDLGAEL--PIEDVPLLQEDIIR-RCRSMQKPVIVAT 372 (570)
Q Consensus 307 ~~i~IiaKIEt~----~g--v~NldeIl~----~-sDgImIgrGDLg~ei--g~~~v~~~qk~Ii~-~c~~~gKPvivaT 372 (570)
.+..|..||=-. .| ++..-++++ . .|.|=|..|...... +... ..+....+ ..+....||+..
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~--~~~~~~~~~ir~~~~iPVi~~- 296 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGP--GYQVPFAERIRQEAGIPVIAV- 296 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCc--cccHHHHHHHHhhCCCCEEEe-
Confidence 788888886411 11 222223332 2 677777665443221 2211 11112222 233457998863
Q ss_pred cchhhhhcCCCcChHHHhHHHHHHHhC-ccEEEec
Q 008319 373 NMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (570)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs 406 (570)
...-+.+ +...++..| +|+|++.
T Consensus 297 --------G~i~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 297 --------GLITDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred --------CCCCCHH---HHHHHHHcCCCCeehhh
Confidence 2233333 344567777 9999874
No 282
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=55.49 E-value=1.5e+02 Score=31.35 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=78.4
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEc----CCCc
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA----RGDL 341 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIg----rGDL 341 (570)
....+...+.|+|+|..+...++ ..++-..++... +.+++| .+.+++|-+.. +|.|=-- -|+.
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MA------D~stleEal~a~~~Gad~I~TTl~gyT~~~ 147 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVC------GARNLGEALRRISEGAAMIRTKGEAGTGNV 147 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEc------cCCCHHHHHHHHHCCCCEEEecCCCCCCcH
Confidence 45556667899999998888777 344445554433 678888 44556666554 3432211 0110
Q ss_pred --------------ccCCCC--CCHHH-H-----HHHHHHH-HHHcCCCEE-EEccchhhhhcCCCcChHHHhHHHHHHH
Q 008319 342 --------------GAELPI--EDVPL-L-----QEDIIRR-CRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVR 397 (570)
Q Consensus 342 --------------g~eig~--~~v~~-~-----qk~Ii~~-c~~~gKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~ 397 (570)
....++ +.+.. . --..++. +.....||+ +| ....-|.+ ++..++.
T Consensus 148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpe---na~~v~e 216 (283)
T cd04727 148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPA---DAALMMQ 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHH---HHHHHHH
Confidence 000011 00000 0 0022333 333468987 44 33333333 4556778
Q ss_pred hCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 398 EGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 398 ~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
.|+|++++.+.-..-..|.+.++.+......
T Consensus 217 ~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 217 LGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 9999999986655567899999998877654
No 283
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.49 E-value=1.5e+02 Score=29.99 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 353 ~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
.-..+++.|+++|.|.+ |--.-.+++..|...|+|.+=|--
T Consensus 100 ~~~~v~~~~~~~~i~~i--------------PG~~TpsEi~~A~~~Ga~~vKlFP 140 (222)
T PRK07114 100 FNPDIAKVCNRRKVPYS--------------PGCGSLSEIGYAEELGCEIVKLFP 140 (222)
T ss_pred CCHHHHHHHHHcCCCEe--------------CCCCCHHHHHHHHHCCCCEEEECc
Confidence 34689999999999988 333334568899999999998853
No 284
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=55.48 E-value=2.1e+02 Score=31.47 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.++.+. .|..+....+...-..|++.+...+.. --..+-..++...++.++.+..++.
T Consensus 76 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~~~~ 143 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGAHIL 143 (454)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCcEec
Confidence 4566899999999874 222222334556688899988764211 1112223344555555443322111
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHHh----cCCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls~----~RP~~pIiavt~~~~ 499 (570)
.+ |.+. ..+..-....+.++.++++ . .||+..-+|.|+.-+++ ++|.+.|+++.+...
T Consensus 144 ~~-~~~~-----~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~ 208 (454)
T TIGR01137 144 DQ-YNNP-----SNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGS 208 (454)
T ss_pred cc-CCCh-----hhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCC
Confidence 11 1111 0111112233456777764 4 89999999988876665 579999999988543
No 285
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.48 E-value=23 Score=37.95 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=41.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCChHHHHHHHHHHHH
Q 008319 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 102 KIi~TiGPs~~~~e~l~~li~~G--m~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
-..+++|-..++.|.+..|+++| .|+.=+..|||..+...++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 56777888888889999999999 6999999999998887777777775
No 286
>PRK07476 eutB threonine dehydratase; Provisional
Probab=55.37 E-value=1.8e+02 Score=30.58 Aligned_cols=118 Identities=9% Similarity=0.072 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
.+...|++.|.|+.+. .|..+.-..+...-..|++.+... ...-++++...+++.+-. ..+.
T Consensus 81 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~~~~~g-~~~~ 142 (322)
T PRK07476 81 ALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVG------RSQDDAQAEVERLVREEG-LTMV 142 (322)
T ss_pred HHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEEC------CCHHHHHHHHHHHHHhcC-CEEe
Confidence 5667899999998874 122222334566678999977653 224577777766654421 2222
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+ +.+. ...+.....+.++.++++- .||+.+-+|.++--++ .+.|...||++-+..
T Consensus 143 ~~-~~n~------~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 143 PP-FDDP------RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred CC-CCCc------ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 21 1111 1112223444667777653 6999999998866555 468999999999863
No 287
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=55.35 E-value=21 Score=40.42 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=41.9
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
+-..=+.+|+.-+..|-.+.|+++|+|+.=++.+||......++|+.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34455578988788999999999999999999999988776777777775
No 288
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=55.32 E-value=65 Score=31.92 Aligned_cols=94 Identities=13% Similarity=0.230 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHhhc-CC-cEEEEcC--ChHHHHHHHh-----c---CCCCeEEEEeCCHHHH--------------HHh
Q 008319 451 GDMFAFHSTTMANTL-NT-PIIVFTR--TGSMAVILSH-----Y---RPSSTIFAFTNQERIK--------------QRL 504 (570)
Q Consensus 451 ~~~ia~~av~~a~~~-~a-~Iiv~T~--sG~tA~~ls~-----~---RP~~pIiavt~~~~ta--------------RrL 504 (570)
.+.+..++-.+++.+ ++ .|+++-. ||.+|+.++. | ||..|.++++.+..+. |++
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 355666666666654 44 6777765 5556777773 3 9999999998765544 444
Q ss_pred c--cccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC
Q 008319 505 V--LYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSG 550 (570)
Q Consensus 505 ~--L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~ 550 (570)
+ +..|=.-+.+..+.+..+ +..++++++++|. +++.++|.
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~-v~~a~~~Ak~~G~-----~vI~IT~~ 145 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRD-IVKAVEAAVTRDM-----TIVALTGY 145 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHH-HHHHHHHHHHCCC-----EEEEEeCC
Confidence 3 445555555555544443 5667888888654 67777773
No 289
>PRK08639 threonine dehydratase; Validated
Probab=55.24 E-value=1.7e+02 Score=32.15 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|..+-...+...-..|++.+.+- ..|...-++++.-.+++++ +..++.
T Consensus 87 alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~---~~g~~~~~a~~~a~~~a~~-~g~~~~ 151 (420)
T PRK08639 87 GVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIV---LVGDTFDDSAAAAQEYAEE-TGATFI 151 (420)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEE---EeCcCHHHHHHHHHHHHHh-cCCccc
Confidence 5566899999999874 233322333556677899853221 1245556777766665544 222222
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC----C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN----T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~----a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+ |.+. .....-..-+.++.++++ . .||+..-+|.++.-++ .++|.+.||+|-+..
T Consensus 152 ~~-~~~~------~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 152 PP-FDDP------DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred CC-CCCh------hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 22 2111 111111122455666653 5 7899888887765555 447999999998864
No 290
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=74 Score=34.43 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=55.6
Q ss_pred cchhhhHHHHHHh-CCEEEEcCCCcccCCCCC--CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH--HhHH
Q 008319 318 ADSIPNLHSIISA-SDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDI 392 (570)
Q Consensus 318 ~~gv~NldeIl~~-sDgImIgrGDLg~eig~~--~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE--v~Dv 392 (570)
+..++.+...++. +|.|.+|=-+++.-.... .... .+++++.|+++||-++++.+++-. +..-| ...+
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~~------~~~~~~~~~~l 85 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLLH------NDELETLERYL 85 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccccc------cchhhHHHHHH
Confidence 3456666666666 899999955666554431 2222 678999999999999998553321 11122 3456
Q ss_pred HHHHHhCccEEEec
Q 008319 393 AIAVREGADAVMLS 406 (570)
Q Consensus 393 ~nav~~G~D~vmLs 406 (570)
..++..|+|++.++
T Consensus 86 ~~l~e~GvDaviv~ 99 (347)
T COG0826 86 DRLVELGVDAVIVA 99 (347)
T ss_pred HHHHHcCCCEEEEc
Confidence 78899999999996
No 291
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=55.14 E-value=2e+02 Score=31.11 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCCCCChhhHHHhhhhhhcCCcEEEecCCCCh---------------hHHHHHHHHHHhcCCCceEEEeec------C-c
Q 008319 261 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIVKIE------S-A 318 (570)
Q Consensus 261 ~lp~lt~kD~~dI~~~~~~gvd~I~~SfV~sa---------------~dv~~vr~~l~~~~~~i~IiaKIE------t-~ 318 (570)
++..+|-+|.---+.+-+.|+|.|.+. .|. ++...--+.+.+.-.+..+++=++ + .
T Consensus 36 kivmlTAyD~~sA~i~d~aGvD~ILVG--DSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e 113 (332)
T PLN02424 36 PITMVTAYDYPSAVHVDSAGIDVCLVG--DSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTD 113 (332)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEEC--CcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHH
Confidence 455678888877777778899998866 222 222111122333334566775554 2 3
Q ss_pred chhhhHHHHHHh--CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEccchhhhhc---CC-CcChHH
Q 008319 319 DSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMID---HP-TPTRAE 388 (570)
Q Consensus 319 ~gv~NldeIl~~--sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi----vaTqmLeSM~~---~~-~PtrAE 388 (570)
++++|...+++. +|+|=+--|. ..+-.+|+...++|.||+ +.-|-...+-- .. ....++
T Consensus 114 ~av~nA~rl~~eaGa~aVKlEGg~-----------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~ 182 (332)
T PLN02424 114 QAVESAVRMLKEGGMDAVKLEGGS-----------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAV 182 (332)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCc-----------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHH
Confidence 788899999764 7888885332 222355555559999998 65555555432 21 122222
Q ss_pred --HhHHHHHHHhCccEEEec
Q 008319 389 --VSDIAIAVREGADAVMLS 406 (570)
Q Consensus 389 --v~Dv~nav~~G~D~vmLs 406 (570)
+.|.-..-..|+++++|-
T Consensus 183 ~li~dA~ale~AGAf~ivLE 202 (332)
T PLN02424 183 KVVETALALQEAGCFAVVLE 202 (332)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 455555568899999994
No 292
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=55.05 E-value=71 Score=32.64 Aligned_cols=148 Identities=22% Similarity=0.179 Sum_probs=85.0
Q ss_pred CCCChhhHH-HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhh-----hHHHHHHh------
Q 008319 263 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP-----NLHSIISA------ 330 (570)
Q Consensus 263 p~lt~kD~~-dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~-----NldeIl~~------ 330 (570)
|..|++|.. .+..|.++++..|++. +..+...+++|+.. ..+.+..=|--|.|-. -.+-....
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~-~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdE 93 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGS-TVVRVCTVIGFPLGANTTAVKAAEAREAIENGADE 93 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccC-CCeEEEEecCCCCCCChHHHHHHHHHHHHHcCCCe
Confidence 677888874 4467888998887776 55677788888654 2333544453333322 22222222
Q ss_pred CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHH-HHHHHhCccEEEeccc
Q 008319 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDI-AIAVREGADAVMLSGE 408 (570)
Q Consensus 331 sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv-~nav~~G~D~vmLs~E 408 (570)
.|.++ ..|-|- +=.++.|..-.+.+.++|... -.-||+-|-. -|..|.... --++..|+|+|=-|.-
T Consensus 94 iDmVi-nig~~k-~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~---------Lt~ee~~~A~~i~~~aGAdFVKTSTG 162 (228)
T COG0274 94 IDMVI-NIGALK-SGNWEAVEREIRAVVEACADAVVLKVILETGL---------LTDEEKRKACEIAIEAGADFVKTSTG 162 (228)
T ss_pred eeeee-eHHHHh-cCCHHHHHHHHHHHHHHhCCCceEEEEEeccc---------cCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 33332 333221 112244555556666666653 4446765544 445554333 3467889999876643
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 008319 409 TAHGKFPLKAVKVMHTVA 426 (570)
Q Consensus 409 TA~G~yP~eaV~~m~~I~ 426 (570)
=+-|.--+|.|+.|.+++
T Consensus 163 f~~~gAT~edv~lM~~~v 180 (228)
T COG0274 163 FSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 344555689999999987
No 293
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=54.98 E-value=3e+02 Score=30.56 Aligned_cols=187 Identities=19% Similarity=0.198 Sum_probs=93.4
Q ss_pred HHHHHHHHHhh-cCCCcEEEEeecCCCeeeeccCCCceeecCCCEEEEEEecCCCCccEE-Ee-ccCCcccccccCCEEE
Q 008319 143 TIDLVKEYNSQ-FEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTV-SV-NYDDFVNDVEVGDILL 219 (570)
Q Consensus 143 ~i~~ir~~~~~-~~~~~i~I~~Dl~GpkiR~G~~~~~i~l~~G~~v~lt~~~~~~~~~~i-~v-~~~~l~~~v~~Gd~I~ 219 (570)
+-..|++.-+. + .++.|-..+.+-+.+. .| -+.|+..+....-.++ |= .+..+--.++.|++|+
T Consensus 5 l~~~ik~~le~~~--~~v~V~GEisn~~~~~----------sG-H~YFtLkD~~a~i~~vmf~~~~~~l~f~~~~G~~V~ 71 (432)
T TIGR00237 5 LNAQIKALLEATF--LQVWIQGEISNFTQPV----------SG-HWYFTLKDENAQVRCVMFRGNNNRLKFRPQNGQQVL 71 (432)
T ss_pred HHHHHHHHHHhhC--CcEEEEEEecCCeeCC----------Cc-eEEEEEEcCCcEEEEEEEcChhhCCCCCCCCCCEEE
Confidence 33445554432 3 3677777766655421 22 2444443222221222 21 1223334568899877
Q ss_pred Ee--------CCeeEEEEEEEeCCeE----------EEEEEeCcEeccCcccccCCCccCCCCCChhhHHHhhhhhhcCC
Q 008319 220 VD--------GGMMSLAVKSKTKDLV----------KCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQV 281 (570)
Q Consensus 220 iD--------DG~i~l~V~~~~~~~i----------~~~v~~gG~l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~~~gv 281 (570)
+- .|..+|.|.++++..+ +-+-...|.+ =|....++|.+.. .+
T Consensus 72 v~g~v~~y~~~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~eGlf-------d~~~k~~lP~~p~------------~i 132 (432)
T TIGR00237 72 VRGGISVYEPRGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAEGLF-------DQEYKKPLPHFPK------------RV 132 (432)
T ss_pred EEEEEEEECCCCcEEEEEEEeccCChHHHHHHHHHHHHHHHHCCCC-------CchhcCCCCCCCC------------EE
Confidence 64 7788888887765432 1111223333 3344445555432 11
Q ss_pred cEEEecCCCChhHHHHHHHHHHhcCCCce--EEE-eecCcchhhhHHHHHHh---------CCEEEEcCCCcccCCCCCC
Q 008319 282 DFYAVSFVKDAKVVHELKDYLKSCNADIH--VIV-KIESADSIPNLHSIISA---------SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 282 d~I~~SfV~sa~dv~~vr~~l~~~~~~i~--Iia-KIEt~~gv~NldeIl~~---------sDgImIgrGDLg~eig~~~ 349 (570)
+|.-| .+++-++.+...+........ ++. .+.-.+| ..+|++. .|.|+|+||-=+.| +
T Consensus 133 -~vits--~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a---~~~i~~al~~~~~~~~~dviii~RGGGs~e----D 202 (432)
T TIGR00237 133 -GVITS--QTGAALADILHILKRRDPSLKVVIYPTLVQGEGA---VQSIVESIELANTKNECDVLIVGRGGGSLE----D 202 (432)
T ss_pred -EEEeC--CccHHHHHHHHHHHhhCCCceEEEecccccCccH---HHHHHHHHHHhhcCCCCCEEEEecCCCCHH----H
Confidence 12223 455556666555655443222 221 3332223 2222222 59999999954332 2
Q ss_pred H-HHHHHHHHHHHHHcCCCEEEE
Q 008319 350 V-PLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 350 v-~~~qk~Ii~~c~~~gKPviva 371 (570)
+ +.-.+.++++......|||.|
T Consensus 203 L~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 203 LWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred hhhcCcHHHHHHHHcCCCCEEEe
Confidence 2 223457778888899999987
No 294
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=54.88 E-value=1.4e+02 Score=30.82 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCChhhHHHhhhhhhcCCcEEEecCCC-------------ChhHH-HHHHHHHHhcCCCceEEEeecC-------cchhh
Q 008319 264 SITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVV-HELKDYLKSCNADIHVIVKIES-------ADSIP 322 (570)
Q Consensus 264 ~lt~kD~~dI~~~~~~gvd~I~~SfV~-------------sa~dv-~~vr~~l~~~~~~i~IiaKIEt-------~~gv~ 322 (570)
.+|-+|.--.+.+-+.|+|.+..+.-- +-++. ..++. +.+.-....|++=++- .++++
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~-V~r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRA-VRRGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHH-HHhcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 446678776677778899988654110 11111 11122 2222233447776751 23366
Q ss_pred hHHHHHH-h-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEccchhhh----hcCCCcChHH--Hh
Q 008319 323 NLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESM----IDHPTPTRAE--VS 390 (570)
Q Consensus 323 NldeIl~-~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi----vaTqmLeSM----~~~~~PtrAE--v~ 390 (570)
|.-.+++ + ++||.|-=| ..+...|+++.++|.||+ +--|--..+ +......+++ +.
T Consensus 95 ~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ 162 (254)
T cd06557 95 NAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLE 162 (254)
T ss_pred HHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHH
Confidence 7666776 4 889998543 256788888999999987 221211111 1111222233 66
Q ss_pred HHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 391 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 391 Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
+.-.+...|+|+++|-+ - |. +.+..|+++..
T Consensus 163 ra~a~~~AGA~~i~lE~-----v-~~---~~~~~i~~~v~ 193 (254)
T cd06557 163 DALALEEAGAFALVLEC-----V-PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHCCCCEEEEcC-----C-CH---HHHHHHHHhCC
Confidence 67777799999999931 1 42 46677776665
No 295
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=54.78 E-value=2e+02 Score=31.32 Aligned_cols=90 Identities=9% Similarity=0.114 Sum_probs=58.2
Q ss_pred hHH-HhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh-----------hhHHHHHHh-CCEEE
Q 008319 269 DWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI-----------PNLHSIISA-SDGAM 335 (570)
Q Consensus 269 D~~-dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv-----------~NldeIl~~-sDgIm 335 (570)
|.+ .++.+.+.|+|.|+++ ...++.+......++.+|.|+-....+ -..+|-++. +|+|-
T Consensus 92 dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~ 164 (348)
T PRK09250 92 DPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVG 164 (348)
T ss_pred CHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEE
Confidence 443 5567788899999988 344555443344567899998775554 245666666 78655
Q ss_pred EcCCCcccCCCC---CCHHHHHHHHHHHHHHcCCCEEE
Q 008319 336 VARGDLGAELPI---EDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 336 IgrGDLg~eig~---~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
+. +-+|- .+...-..++.+.|++.|.|++.
T Consensus 165 ~t-----vy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 165 AT-----IYFGSEESRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EE-----EecCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 42 12222 13333446899999999999886
No 296
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.73 E-value=1.4e+02 Score=31.40 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=57.0
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeec---CcchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIE---t~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.+++.++.|+++|++. .....|..+-++...+..+.++.||+-+= |.++++....--+. +|++|+-+-
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 45567789999998763 12223333334455566677899999884 45555555555554 899999754
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~-gKPviva 371 (570)
..-. ..-+.+...-+. .|.+. +.|+++.
T Consensus 113 ~y~~-~~~~~l~~yf~~---va~a~~~lPv~iY 141 (309)
T cd00952 113 MWLP-LDVDTAVQFYRD---VAEAVPEMAIAIY 141 (309)
T ss_pred cCCC-CCHHHHHHHHHH---HHHhCCCCcEEEE
Confidence 3211 111233333333 44456 6899974
No 297
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=54.65 E-value=22 Score=35.32 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhh
Q 008319 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153 (570)
Q Consensus 112 ~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~ 153 (570)
+-.+.|.+|.++|++.|||.+-..+.++..++++..|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999987554
No 298
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=54.59 E-value=37 Score=36.79 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=45.6
Q ss_pred HHhhhhhhcCCcEEEecCC------CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFV------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGD 340 (570)
+|.+.+.+.|+|+|.+|-. ..+..+..+.+..+..+.++.||+- -||.+-.+|+++ +|+++|||.=
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 5667788999999999732 1222344455544444556777773 577777888776 8999999955
Q ss_pred c
Q 008319 341 L 341 (570)
Q Consensus 341 L 341 (570)
|
T Consensus 309 l 309 (351)
T cd04737 309 L 309 (351)
T ss_pred H
Confidence 4
No 299
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=54.53 E-value=97 Score=27.67 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH--hCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 293 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS--ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 293 ~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~--~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
--+..+++++++.|-+..+.+ -++.++++.+. ..|.|++| +.+...++++-+.|...|+||.+
T Consensus 16 lla~k~k~~~~e~gi~~~i~a-----~~~~e~~~~~~~~~~DvIll~----------PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDA-----ITATEGEKAIAAAEYDLYLVS----------PQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEE-----ecHHHHHHhhccCCCCEEEEC----------hHHHHHHHHHHHHhhhcCCCEEE
Confidence 345678889988887755444 35566777654 38999998 57888999999999999999986
Q ss_pred EccchhhhhcCCCcChHH
Q 008319 371 ATNMLESMIDHPTPTRAE 388 (570)
Q Consensus 371 aTqmLeSM~~~~~PtrAE 388 (570)
++.....|.|--+|
T Consensus 81 ----I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 81 ----IPPQAYIPIPMGIE 94 (104)
T ss_pred ----eCHHHcCCCccCHH
Confidence 45556666665554
No 300
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=54.42 E-value=1.4e+02 Score=31.14 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=58.4
Q ss_pred HHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeecC---cchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.++|.++.|+++|++. .....|..+-++...+....++.|++-+-. .++++......+. +|++|+.+-
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 55678889999998654 112233333344455556677899988853 3455555554444 899999764
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~-gKPviva 371 (570)
..- + ..-..+....-..|.+. +.|+++.
T Consensus 105 ~y~---~-~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 YYN---K-PNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred cCC---C-CCHHHHHHHHHHHHHhccCCCEEEE
Confidence 321 1 11133444444556667 7999874
No 301
>PLN03013 cysteine synthase
Probab=54.32 E-value=2.1e+02 Score=31.94 Aligned_cols=122 Identities=11% Similarity=0.091 Sum_probs=70.4
Q ss_pred HHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 008319 357 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 436 (570)
Q Consensus 357 Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (570)
+...|+..|.|+++. .|..+....+...-..|++.++.... .| -.++++...+++.+-...++..
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~--~~~a~~~A~ela~~~~g~~~~~ 254 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG--MTGAVQKAEEILKNTPDAYMLQ 254 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC--hHHHHHHHHHHHhhcCCeEeCC
Confidence 445789999999874 33334444456667899998876432 11 2245666666554422222222
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 008319 437 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 499 (570)
Q Consensus 437 ~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~ 499 (570)
++ .+.. .+..-...-+.++.++++ . .+|+..-+|.+..-++ ...|.+.|+++-+...
T Consensus 255 qy-~Np~-----n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 255 QF-DNPA-----NPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred CC-CCHH-----HHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 21 1100 011011123356666664 4 7888888997765555 4579999999999764
No 302
>PRK08329 threonine synthase; Validated
Probab=54.30 E-value=3e+02 Score=29.41 Aligned_cols=118 Identities=12% Similarity=0.013 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+.+|.++.+. .|..+....+...-..|++.+...+ .|. ++.+...++..+-+. ++
T Consensus 118 alA~~aa~~G~~~~v~-----------vp~~~~~~k~~~~~~~GA~v~~v~~-----~~~-~~~~~a~~l~~~~~~--~~ 178 (347)
T PRK08329 118 SLALYSLSEGIKVHVF-----------VSYNASKEKISLLSRLGAELHFVEG-----DRM-EVHEEAVKFSKRNNI--PY 178 (347)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCChHHHHHHHHHcCCEEEEECC-----CHH-HHHHHHHHHHHhcCC--ee
Confidence 3456788999999875 3434445567777889999988854 344 455655555443221 11
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHhcC----------CCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHYR----------PSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~~R----------P~~pIiavt~~~ 498 (570)
...+.+. . ..+...-.+.++.++++. .||+.+-+|.++.-+++.- +...|+++-+..
T Consensus 179 ~~~~~np---~---~~eG~~t~~~Ei~eql~~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g 247 (347)
T PRK08329 179 VSHWLNP---Y---FLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEG 247 (347)
T ss_pred ccCCCCc---h---hhccchhHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Confidence 1111110 0 111112233466677764 8999999999887766432 445688887753
No 303
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=54.11 E-value=76 Score=31.18 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCceEEEeecCcch-hhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADS-IPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~g-v~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.|++.|.++.+.+.-|.... .++.+++++..|.|+.+-.+ ......+-+.|++.++|++.+
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3467778888999888776665532 45778888889988876221 346667889999999999876
No 304
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=53.91 E-value=48 Score=34.74 Aligned_cols=64 Identities=9% Similarity=0.104 Sum_probs=46.7
Q ss_pred hhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEe--ecCcchhhhHHHHHHh-CCEEEEcC
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~-sDgImIgr 338 (570)
-++.+++..+++.|+|+|.+... +.+++.++.+.+. .++++.|- | -.+|+.++++. +|+|-+|.
T Consensus 196 v~tleea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 196 VESLDELRQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 35577788888999999999854 7777777666552 35555442 3 25688999988 99999974
No 305
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=53.51 E-value=3e+02 Score=29.20 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=76.1
Q ss_pred hhHHHh-hhhhhcCCcEEEecCC--C-Chh----HH-HHHHHHHHhc--CCCceEEEeecCcchhhhHHHHHHh-----C
Q 008319 268 KDWEDI-KFGVDNQVDFYAVSFV--K-DAK----VV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----S 331 (570)
Q Consensus 268 kD~~dI-~~~~~~gvd~I~~SfV--~-sa~----dv-~~vr~~l~~~--~~~i~IiaKIEt~~gv~NldeIl~~-----s 331 (570)
.++.++ +.+.+.|+|+|-+.+- . +.. +. ..+.+.++.. ..++++++|+- + .+.++.++++. +
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~-p-~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS-P-FFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC-C-CccCHHHHHHHHHHcCC
Confidence 344444 3445678999866542 1 111 01 1122333222 23589999984 3 24466666654 7
Q ss_pred CEEEEc-CCCcccCCCC--------------CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHH
Q 008319 332 DGAMVA-RGDLGAELPI--------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV 396 (570)
Q Consensus 332 DgImIg-rGDLg~eig~--------------~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav 396 (570)
|||.+. |. .+..+.+ ...+...+.+-+..+....|+|-. ...-+ ..|+..++
T Consensus 190 dgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~---------GGI~s---~~Da~e~l 256 (325)
T cd04739 190 DGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAAS---------GGVHD---AEDVVKYL 256 (325)
T ss_pred CeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEE---------CCCCC---HHHHHHHH
Confidence 887663 32 1111111 123344444444455557888753 33322 45788899
Q ss_pred HhCccEEEecccccCCCC-HHHHHHHHHHHHHHhhcCC
Q 008319 397 REGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 397 ~~G~D~vmLs~ETA~G~y-P~eaV~~m~~I~~~aE~~~ 433 (570)
..|+|+|++. |+.=.+ |- .+.+|+++.+..+
T Consensus 257 ~aGA~~Vqv~--ta~~~~gp~----~~~~i~~~L~~~l 288 (325)
T cd04739 257 LAGADVVMTT--SALLRHGPD----YIGTLLAGLEAWM 288 (325)
T ss_pred HcCCCeeEEe--hhhhhcCch----HHHHHHHHHHHHH
Confidence 9999999997 342222 43 4455555555443
No 306
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=53.41 E-value=2.7e+02 Score=28.68 Aligned_cols=170 Identities=17% Similarity=0.145 Sum_probs=93.5
Q ss_pred CcccccCCCccCCCCCChhhHHHhh-hhhhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeecC-cchhh----
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIK-FGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP---- 322 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~-~~~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIEt-~~gv~---- 322 (570)
|.|-..++. .++..++..|. .-.+.|+|.|=+.| .-++.++..++...+..-.+..+.+..-. ..++.
T Consensus 7 RDG~Q~~~~-----~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (273)
T cd07941 7 RDGTQGEGI-----SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEED 81 (273)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccch
Confidence 444444443 34556665554 44578999997744 34677776665543332123444432211 11221
Q ss_pred -hHHHHHHh-CCEEEEc--CCCcc----cCCCCCCHHHHHHHHHHHHHHcCCCEEEE-ccchhhhhcCCCcChHHHhHHH
Q 008319 323 -NLHSIISA-SDGAMVA--RGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNMLESMIDHPTPTRAEVSDIA 393 (570)
Q Consensus 323 -NldeIl~~-sDgImIg--rGDLg----~eig~~~v~~~qk~Ii~~c~~~gKPviva-TqmLeSM~~~~~PtrAEv~Dv~ 393 (570)
.++..++. .|.|.+. ..|+- ..+..++.....+++++.+++.|..|.+. +.+.+ ...-+...+.+.+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHH
Confidence 23334444 5655442 22321 11223456666779999999999987662 11111 1111233344444
Q ss_pred H-HHHhCccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 394 I-AVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 394 n-av~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
. +...|+|.+.|. +|.=...|.+.-+.++.+..+.
T Consensus 158 ~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 158 KAAAEAGADWLVLC-DTNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred HHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhC
Confidence 3 355699998874 7877788999888887776544
No 307
>PRK07048 serine/threonine dehydratase; Validated
Probab=53.38 E-value=1.8e+02 Score=30.64 Aligned_cols=119 Identities=11% Similarity=0.130 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|. .+.-..+...-..|++.+...+ +.-++.+...++..+-. .++.
T Consensus 86 alA~~a~~~G~~~~vv---------vp~--~~~~~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~~g-~~~~ 147 (321)
T PRK07048 86 AIALSARLLGIPATIV---------MPQ--DAPAAKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEERG-LTLI 147 (321)
T ss_pred HHHHHHHHcCCCEEEE---------ECC--CCCHHHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHhcC-CEEE
Confidence 4566899999999874 111 1111234555678999888742 23455555444443311 1111
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHhc----CCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~~----RP~~pIiavt~~~~ 499 (570)
.+ |.+. +....-...+.++.++++. .||+..-+|.+.--++++ .|...|+++-+...
T Consensus 148 ~~-~~~~------~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~ 210 (321)
T PRK07048 148 PP-YDHP------HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAG 210 (321)
T ss_pred CC-CCCc------chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCC
Confidence 11 1111 1111111223466666654 799999999997776665 79999999998653
No 308
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=53.22 E-value=72 Score=32.45 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.+.+.|.++.|-+--+..+. +|++++++..|.|+-+- +-+.....+-+.|++.++|++.+
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~----------D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCT----------DNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcC----------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3456777777888777664444333 57888888899888762 12346677889999999999976
No 309
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=53.17 E-value=1.4e+02 Score=31.43 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=74.7
Q ss_pred CceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEccchhhhhcCC
Q 008319 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMIDHP 382 (570)
Q Consensus 308 ~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi----vaTqmLeSM~~~~ 382 (570)
.+++.........++.+..-++. .+-||+. +-.+|+++=...-+++++.|+..|.+|= .-..--+.....
T Consensus 77 ~vPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~- 151 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD- 151 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc-
Confidence 37899999988766665555554 6799996 3346787777888999999999998872 110000000000
Q ss_pred CcChHHHhHHHHHHH-hCccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 383 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 383 ~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
.-......+...++. -|+|++-.+--|+.|.| |---.+.+.+|....
T Consensus 152 ~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 152 GIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred ccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 000112334556665 49999999999999999 434455666665433
No 310
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=53.16 E-value=2.2e+02 Score=28.33 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=58.5
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcc---------------------hhhhHHHH
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD---------------------SIPNLHSI 327 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~---------------------gv~NldeI 327 (570)
..+|++...+.|++.|.+.-- .-++...++++.+..+.+. ++.-+.... .++-+...
T Consensus 85 ~~~d~~~~~~~G~~~vilg~~-~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 85 SLEDAKKLLSLGADKVSINTA-ALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred CHHHHHHHHHcCCCEEEEChh-HhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 445565566779999877621 2233334455554444332 333333222 12222232
Q ss_pred HHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEe
Q 008319 328 ISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVML 405 (570)
Q Consensus 328 l~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmL 405 (570)
.+. +|.+.+.- ...+-..+.. -.+.+-+.++..+.|++.+.. .-+. .|+.. +...|+|++++
T Consensus 163 ~~~G~d~i~i~~--i~~~g~~~g~--~~~~~~~i~~~~~ipvia~GG---------i~s~---~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 163 EQLGAGEILLNS--IDRDGTMKGY--DLELIKTVSDAVSIPVIALGG---------AGSL---DDLVEVALEAGASAVAA 226 (232)
T ss_pred HHcCCCEEEEeC--CCccCCcCCC--CHHHHHHHHhhCCCCEEEECC---------CCCH---HHHHHHHHHcCCCEEEE
Confidence 223 78888752 2221111110 012223334455899997533 3333 34545 45569999998
Q ss_pred c
Q 008319 406 S 406 (570)
Q Consensus 406 s 406 (570)
.
T Consensus 227 g 227 (232)
T TIGR03572 227 A 227 (232)
T ss_pred e
Confidence 6
No 311
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=52.94 E-value=2.5e+02 Score=29.08 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCH-HHHHHHHHHHHHHhhcCC-
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP-LKAVKVMHTVALRTESSL- 433 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP-~eaV~~m~~I~~~aE~~~- 433 (570)
.+...|+..|.|+.+. .|...........-..|++.+..- |.|. .++++...++..+-...+
T Consensus 71 alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 71 ALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTP-----GAEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEEC-----CCCCHHHHHHHHHHHHHhCCCcEE
Confidence 4556889999999874 222222223555677999998764 3443 466666555543321111
Q ss_pred CCCCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 434 PVSITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
+..+ |.+. ..+..-....+.++.++++ . .||+.+-+|.++--++ .++|...||+|-+..
T Consensus 135 ~~~~-~~n~-----~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 135 MLQQ-FENP-----ANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred cccc-cCCc-----ccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 1111 1110 0111111223446666665 4 7999999997775544 567999999999965
No 312
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=52.85 E-value=59 Score=32.35 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=58.0
Q ss_pred hhHHHhh-hhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCC
Q 008319 268 KDWEDIK-FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAEL 345 (570)
Q Consensus 268 kD~~dI~-~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~ei 345 (570)
.+...+. -.++.|+..+-++| +++.-.+.++.+-++. .++.|=| =|..-.+.++..++. ++-++ .|
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~-~t~~a~~~I~~l~~~~-p~~~vGA--GTV~~~e~a~~a~~aGA~Fiv-SP------- 87 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITL-RTPNALEAIEALRKEF-PDLLVGA--GTVLTAEQAEAAIAAGAQFIV-SP------- 87 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEET-TSTTHHHHHHHHHHHH-TTSEEEE--ES--SHHHHHHHHHHT-SEEE-ES-------
T ss_pred HHHHHHHHHHHHCCCCEEEEec-CCccHHHHHHHHHHHC-CCCeeEE--EeccCHHHHHHHHHcCCCEEE-CC-------
Confidence 3443333 34567777777776 4444444444333322 3333322 233333344444444 44433 22
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCC
Q 008319 346 PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 412 (570)
Q Consensus 346 g~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G 412 (570)
..-.++++.|+++|.|++= --.-.+++..|...|+|.+=+---...|
T Consensus 88 ------~~~~~v~~~~~~~~i~~iP--------------G~~TptEi~~A~~~G~~~vK~FPA~~~G 134 (196)
T PF01081_consen 88 ------GFDPEVIEYAREYGIPYIP--------------GVMTPTEIMQALEAGADIVKLFPAGALG 134 (196)
T ss_dssp ------S--HHHHHHHHHHTSEEEE--------------EESSHHHHHHHHHTT-SEEEETTTTTTT
T ss_pred ------CCCHHHHHHHHHcCCcccC--------------CcCCHHHHHHHHHCCCCEEEEecchhcC
Confidence 2457899999999999873 2222345889999999999885333333
No 313
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.73 E-value=81 Score=35.12 Aligned_cols=243 Identities=19% Similarity=0.276 Sum_probs=138.9
Q ss_pred cEEEEeecCCCeeeeccCCCceeec------CCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEE
Q 008319 158 AVAIMLDTKGPEVRSGDVPQPIILK------EGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKS 231 (570)
Q Consensus 158 ~i~I~~Dl~GpkiR~G~~~~~i~l~------~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~ 231 (570)
-.+.++.-.||..|+|.+- .+... ..+.|-|. ....+-.++.. ...+.+|+.|+-.++..++.|
T Consensus 31 v~G~~lea~g~~~~iGelc-~i~~~~~~~~~~aEVvgf~------~~~~~L~p~~~-~~gv~~g~~V~~~~~~~~v~~-- 100 (441)
T COG1157 31 VTGLLLEAVGPQARIGELC-KIERSRGSEKVLAEVVGFN------EERVLLMPFEP-VEGVSPGAEVVPTGRPLSVPV-- 100 (441)
T ss_pred EeeeEEEEecCCCcccceE-EEEecCCCCceeEEEEEEc------CCeEEEeccCc-cccCCCCCEEEecCCcccccc--
Confidence 4568888899999999762 12222 33334333 22333345544 468999999988877776654
Q ss_pred EeCCeEEEEEEeC-cEeccCcccccC--CCccCCCCCChhhHHHhhhhhhcCCcEE-EecCCCChhHHH----------H
Q 008319 232 KTKDLVKCIVVDG-GELKSRRHLNVR--GKSANLPSITDKDWEDIKFGVDNQVDFY-AVSFVKDAKVVH----------E 297 (570)
Q Consensus 232 ~~~~~i~~~v~~g-G~l~s~KgIn~p--~~~~~lp~lt~kD~~dI~~~~~~gvd~I-~~SfV~sa~dv~----------~ 297 (570)
++.+--+|+++ |.--.+++.--. -..+..|+.++--..-|...++.|+..| ++-=+-..+.+. .
T Consensus 101 --g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKSt 178 (441)
T COG1157 101 --GDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKST 178 (441)
T ss_pred --ChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHHH
Confidence 34555566652 222222221110 0223344445555566666666676654 111111111111 1
Q ss_pred HHHHH-HhcCCCceEEEee-cCcchhh-hHHHHHHh----CCEEEEcCCCcccCCCCCCHHHHH--HHHHHHHHHcCCCE
Q 008319 298 LKDYL-KSCNADIHVIVKI-ESADSIP-NLHSIISA----SDGAMVARGDLGAELPIEDVPLLQ--EDIIRRCRSMQKPV 368 (570)
Q Consensus 298 vr~~l-~~~~~~i~IiaKI-Et~~gv~-NldeIl~~----sDgImIgrGDLg~eig~~~v~~~q--k~Ii~~c~~~gKPv 368 (570)
+-..+ +....++.|||-| |.-.=|. -|++++.. --.++++..|-+ ++.++..++ -.|.+--|..||-|
T Consensus 179 LLgMiar~t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s---~l~R~~aa~~At~IAEyFRDqG~~V 255 (441)
T COG1157 179 LLGMIARNTEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDES---ALMRLKAAFTATTIAEYFRDQGKRV 255 (441)
T ss_pred HHHHHhccccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCC---HHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 11222 2345679999999 4433333 33445543 237888888864 334444444 37888899999999
Q ss_pred EEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCC-CCHHHHHHHHHHHHHHhhcC
Q 008319 369 IVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG-KFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 369 ivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G-~yP~eaV~~m~~I~~~aE~~ 432 (570)
.+ |++|+.. -|.|.. +.-+-.||+... -||--+-..|-++.++|-+.
T Consensus 256 LL---~mDSlTR-----------fA~AqR---EI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~ 303 (441)
T COG1157 256 LL---IMDSLTR-----------FAMAQR---EIGLAAGEPPATKGYPPSVFSELPRLLERAGNG 303 (441)
T ss_pred EE---EeecHHH-----------HHHHHH---HHHHhcCCCCccCCCCchHHHHhHHHHhhcCCC
Confidence 98 7888744 222322 122346898855 79999999999999998865
No 314
>PRK06110 hypothetical protein; Provisional
Probab=52.51 E-value=2e+02 Score=30.30 Aligned_cols=117 Identities=13% Similarity=-0.002 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.++.+. .|..+..+ .....-..|++.+.. |....++++...+..++ +..++.
T Consensus 84 alA~~a~~~G~~~~iv---------vp~~~~~~--k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~-~~~~~~ 145 (322)
T PRK06110 84 SVAFAARRHGLAATIV---------VPHGNSVE--KNAAMRALGAELIEH------GEDFQAAREEAARLAAE-RGLHMV 145 (322)
T ss_pred HHHHHHHHcCCCEEEE---------EcCCCCHH--HHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHh-cCCEEc
Confidence 3556899999999874 22222222 234567789998764 23345676665555443 222221
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+ |. ....+....-+.++.++++. .||+..-+|.+..-++ .++|...|+++-+..
T Consensus 146 ~~-~~-------~~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 146 PS-FH-------PDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred CC-CC-------ChHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 11 11 11112222334566677654 7888888999877775 468999999999864
No 315
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=52.50 E-value=90 Score=30.69 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.|++.|.++.+-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|++.|+|++.+
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 446777888888877665544443 4567778888988876432 356677889999999999875
No 316
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.29 E-value=2.4e+02 Score=28.07 Aligned_cols=110 Identities=14% Similarity=0.167 Sum_probs=71.9
Q ss_pred ChhhHHH-hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCccc
Q 008319 266 TDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 343 (570)
Q Consensus 266 t~kD~~d-I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~ 343 (570)
+..+... .+.+++.|+..+-+.+ +++.....++.+.++.+.+ ++.=.=|.--.+.++..++. +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 4444433 3556788999999985 6666666677766555433 22223344445566777766 8888863
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..-..+++.|+..|.+++.. .-| .+++..+...|+|.+-+-
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G-----------~~t---~~E~~~A~~~Gad~vk~F 131 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPG-----------VAT---PTEAFAALRAGAQALKLF 131 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEcc-----------cCC---HHHHHHHHHcCCCEEEEC
Confidence 22346788999999998853 112 234778899999999873
No 317
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.15 E-value=1.6e+02 Score=30.64 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=66.3
Q ss_pred cCCCCCC-hhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhh-hHHHHHHh-------
Q 008319 260 ANLPSIT-DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP-NLHSIISA------- 330 (570)
Q Consensus 260 ~~lp~lt-~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~-NldeIl~~------- 330 (570)
..+|.+| ..|..++.+..+. +|++.++- ++.++.. +...+.. ...+|+.|= |.. +++|++.+
T Consensus 90 ~Gl~~~te~~d~~~~~~l~~~-vd~~kIga-~~~~n~~-LL~~~a~--~gkPV~lk~----G~~~s~~e~~~A~e~i~~~ 160 (266)
T PRK13398 90 YNLPVVTEVMDTRDVEEVADY-ADMLQIGS-RNMQNFE-LLKEVGK--TKKPILLKR----GMSATLEEWLYAAEYIMSE 160 (266)
T ss_pred cCCCEEEeeCChhhHHHHHHh-CCEEEECc-ccccCHH-HHHHHhc--CCCcEEEeC----CCCCCHHHHHHHHHHHHhc
Confidence 3455444 4566777777777 88877662 2333322 2233333 344565553 322 33443333
Q ss_pred --CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-HcCCCEEE-EccchhhhhcCCCcChHH--HhHHHHHHHhCccEEE
Q 008319 331 --SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIV-ATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVM 404 (570)
Q Consensus 331 --sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~-~~gKPviv-aTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vm 404 (570)
-+.+++=||--+.+ +++ -..+.-..+..-+ ..+.||++ +++-. .+.| ......|+..|+|++|
T Consensus 161 Gn~~i~L~~rG~~t~~-~Y~-~~~vdl~~i~~lk~~~~~pV~~D~sHs~---------G~~~~v~~~~~aAva~Ga~Gl~ 229 (266)
T PRK13398 161 GNENVVLCERGIRTFE-TYT-RNTLDLAAVAVIKELSHLPIIVDPSHAT---------GRRELVIPMAKAAIAAGADGLM 229 (266)
T ss_pred CCCeEEEEECCCCCCC-CCC-HHHHHHHHHHHHHhccCCCEEEeCCCcc---------cchhhHHHHHHHHHHcCCCEEE
Confidence 25777778753332 222 2233333333443 45999998 54311 1112 3345678999999999
Q ss_pred e
Q 008319 405 L 405 (570)
Q Consensus 405 L 405 (570)
+
T Consensus 230 i 230 (266)
T PRK13398 230 I 230 (266)
T ss_pred E
Confidence 7
No 318
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=52.07 E-value=1e+02 Score=32.12 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=54.5
Q ss_pred HHhhhhhhcCCcEEEec------CCCChhHHH-HHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-----CCEEEEcC
Q 008319 271 EDIKFGVDNQVDFYAVS------FVKDAKVVH-ELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 338 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S------fV~sa~dv~-~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImIgr 338 (570)
+.+++.++.|+|+|.+. +-=|.++-. -++...+..+.++.||+-+-+ +++..-+.++. +|++|+-+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECC
Confidence 45577889999998764 222333333 334455555667889998742 24433333333 79999876
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
--+.- ..-+.+...-+.| |.+.+.|+++.
T Consensus 108 P~y~~-~s~~~i~~~f~~v---~~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAV---CESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhccCCCEEEE
Confidence 44321 1113344444444 44567999875
No 319
>PRK08198 threonine dehydratase; Provisional
Probab=52.04 E-value=2.8e+02 Score=30.15 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|.-+. ...+...-..|++.++.. + . .-++++...+++++ +..++.
T Consensus 84 alA~~a~~~G~~~~iv---------~p~~~~--~~k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~-~g~~~~ 145 (404)
T PRK08198 84 GVAYAASLLGIKATIV---------MPETAP--LSKVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEE-TGATFV 145 (404)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCCC--HHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCCEec
Confidence 4556799999999874 222222 223445667899887652 2 2 34777776666554 222222
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~ 499 (570)
.+ |.+. ...+.-.-.+.++.++++. .||+..-+|.+.--++ .+.|...||++-+...
T Consensus 146 ~~-~~~~------~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 146 HP-FDDP------DVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred CC-CCCc------cHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 21 1111 1122223335566666654 6888888888765444 5689999999998654
No 320
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=51.99 E-value=2.2e+02 Score=29.63 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=71.3
Q ss_pred hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCC-CCHH
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-EDVP 351 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~-~~v~ 351 (570)
++.+.+.|+|++.+|=.. .++-.++++.+.+.|- ..|.-|=-...-+.+..|.+.++|.+=.-+=.|+ .|. ..++
T Consensus 108 ~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~gl--~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~ 183 (259)
T PF00290_consen 108 FKEAKEAGVDGLIIPDLP-PEESEELREAAKKHGL--DLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELP 183 (259)
T ss_dssp HHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCH
T ss_pred HHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcCC--eEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccch
Confidence 455668899999998553 3455677777776554 4555553445667999999997765532222333 233 3566
Q ss_pred HHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 352 LLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 352 ~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.-.+..++..++. .+|+.+- -..-++++ +.. +..|+|+++.-
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vG---------FGI~~~e~---~~~-~~~~aDGvIVG 226 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVG---------FGISTPEQ---AKK-LAAGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEE---------SSS-SHHH---HHH-HHTTSSEEEES
T ss_pred HHHHHHHHHHHhhcCcceEEe---------cCCCCHHH---HHH-HHccCCEEEEC
Confidence 6677888888876 4888763 33334433 333 33999999974
No 321
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=51.93 E-value=38 Score=36.92 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=47.8
Q ss_pred HHHhhhhhhcCCcEEEecCCC------ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCC
Q 008319 270 WEDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG 339 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~------sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrG 339 (570)
.+|.+.+.+.|+|+|.+|-.- ....+..+.+..+..+.++.||+- -||.+-.+|+++ +|++||||.
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 567777889999999888532 122355555555445556778873 477777888776 899999996
Q ss_pred Cc
Q 008319 340 DL 341 (570)
Q Consensus 340 DL 341 (570)
=|
T Consensus 315 ~l 316 (367)
T TIGR02708 315 VI 316 (367)
T ss_pred HH
Confidence 44
No 322
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=51.59 E-value=2.8e+02 Score=30.49 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=71.0
Q ss_pred cCCCCCChhhH-HHhhhhhhcCCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEEeecCcc-hhhhHHHHHHh-CCEEE
Q 008319 260 ANLPSITDKDW-EDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESAD-SIPNLHSIISA-SDGAM 335 (570)
Q Consensus 260 ~~lp~lt~kD~-~dI~~~~~~gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IiaKIEt~~-gv~NldeIl~~-sDgIm 335 (570)
+-+..++..+. +.++.+++.|+++|-..+-. +......++++.+.. ....++.-+.... +-..++...+. +|++.
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~-~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~ 86 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNF-PDHTIVADMKTMDTGAIEVEMAAKAGADIVC 86 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHC-CCCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence 34445555555 44455688999999664311 133444555554443 2344554322221 33366666666 89998
Q ss_pred E-cCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 336 V-ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 336 I-grGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+ +-.| . ...+++++.|+++|.++++-. .+ .+|. +..+..+...|+|.+.+.
T Consensus 87 v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~-------~s-~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 87 ILGLAD--------D--STIEDAVRAARKYGVRLMADL-------IN-VPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred EecCCC--------h--HHHHHHHHHHHHcCCEEEEEe-------cC-CCCH--HHHHHHHHhcCCCEEEEE
Confidence 6 3221 1 113678999999999988620 11 1232 223456677899999765
No 323
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=51.30 E-value=1.1e+02 Score=32.21 Aligned_cols=96 Identities=23% Similarity=0.253 Sum_probs=54.8
Q ss_pred HHHHHh-CCEEEEc-C-CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCcc
Q 008319 325 HSIISA-SDGAMVA-R-GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 401 (570)
Q Consensus 325 deIl~~-sDgImIg-r-GDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D 401 (570)
+..++. +|||++. - |+. ..|..++-..+.+..++.+ +-..|||+- ....-|+.-+.-.-.|-..|+|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~-~~Lt~eEr~~v~~~~~~~~-~grvpvi~G--------v~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGEC-ATLTWEEKQAFVATVVETV-AGRVPVFVG--------ATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHcCCCEEEECcccccc-hhCCHHHHHHHHHHHHHHh-CCCCCEEEE--------eccCCHHHHHHHHHHHHHhCCC
Confidence 444444 8999983 1 221 1233344444444444443 344788753 1222233225555677788999
Q ss_pred EEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 402 AVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 402 ~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
++|+..=--...-+-+.++..+.|+..++
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99997543222234688999999999874
No 324
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=51.29 E-value=1.9e+02 Score=31.77 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecccc
Q 008319 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 409 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 409 (570)
-+..-+++++.+++. .+|+++ . -.|.-.++.+++. +...|+|++.|.+=+
T Consensus 166 ~~e~~~~i~~~Vk~~~~iPv~v--------K--LsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 166 DCDLLEEVCGWINAKATVPVWA--------K--MTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred CHHHHHHHHHHHHHhhcCceEE--------E--eCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 477788888888775 799996 2 2355556777877 667899999997543
No 325
>PLN02550 threonine dehydratase
Probab=50.97 E-value=2.1e+02 Score=33.34 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.++.+. .|. .+-...+...-..|++.++. |...-++.+...+++++ +...+.
T Consensus 171 gvA~aA~~lGika~Iv---------mP~--~tp~~Kv~~~r~~GAeVvl~------g~~~dea~~~A~~la~e-~g~~fi 232 (591)
T PLN02550 171 GVALSAQRLGCDAVIA---------MPV--TTPEIKWQSVERLGATVVLV------GDSYDEAQAYAKQRALE-EGRTFI 232 (591)
T ss_pred HHHHHHHHcCCCEEEE---------ECC--CCCHHHHHHHHHcCCEEEEe------CCCHHHHHHHHHHHHHh-cCCEEE
Confidence 4566799999999874 222 22223355556789987776 23345677777766654 222222
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHHHHHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQERIKQR 503 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~taRr 503 (570)
.+ |.+ .+....-..-+.++.++++ . .|||..-+|.++--++ .++|...||+|-+...-+-.
T Consensus 233 ~p-fdd------p~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~ 300 (591)
T PLN02550 233 PP-FDH------PDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMA 300 (591)
T ss_pred CC-CCC------hHHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence 11 111 1122222333567777775 4 7999999998775555 46799999999997544433
No 326
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.73 E-value=38 Score=35.66 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=48.1
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEc
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIg 337 (570)
..++++.+++.|+|.|.+=.. ++++++++.+.+...+.++ ++|-.-|+ +|+.++++. +|.|.+|
T Consensus 198 tleqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 556677788999999999865 7888888888776544553 45555454 588888888 9999886
No 327
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=50.62 E-value=2.7e+02 Score=28.64 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=72.4
Q ss_pred hHHHhh-hhhhcCCcEEEe-----cCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhh---hHHHHHHh-CCEEEEcC
Q 008319 269 DWEDIK-FGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP---NLHSIISA-SDGAMVAR 338 (570)
Q Consensus 269 D~~dI~-~~~~~gvd~I~~-----SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~---NldeIl~~-sDgImIgr 338 (570)
|..++. ...+.|++.|.+ -|-.+.+++..+++.. +++|+.| +=+- .+++.... +|+|.+.-
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 444443 345679999877 4668899999988764 5667653 2222 34444444 89998865
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 339 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 339 GDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
.+|. +.-.+++++.|+..|..+++- .-+.+| +..+...|+|.+.+++
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lve-----------vh~~~E---~~~A~~~gadiIgin~ 188 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVE-----------VHDEEE---LERALKLGAPLIGINN 188 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEE-----------eCCHHH---HHHHHHcCCCEEEECC
Confidence 5543 246788999999999998864 223334 4567788999988764
No 328
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=50.48 E-value=11 Score=40.17 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=13.8
Q ss_pred hhhhcCCcEEEecCCCChhHH
Q 008319 275 FGVDNQVDFYAVSFVKDAKVV 295 (570)
Q Consensus 275 ~~~~~gvd~I~~SfV~sa~dv 295 (570)
.+.+.|+++| -|||.+-.|+
T Consensus 164 aaa~AGa~~I-SPFVgRi~dw 183 (317)
T TIGR00874 164 ACAEAKVTLI-SPFVGRILDW 183 (317)
T ss_pred HHHHcCCCEE-EeecchHhHh
Confidence 3456788765 6888877663
No 329
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.42 E-value=1.1e+02 Score=31.76 Aligned_cols=95 Identities=14% Similarity=-0.037 Sum_probs=53.8
Q ss_pred hHHHHHHh--CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH---cCCCEEEEccchhhhhcCCCcChHH-HhHHHHHH
Q 008319 323 NLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS---MQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAV 396 (570)
Q Consensus 323 NldeIl~~--sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~---~gKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav 396 (570)
.++..++. +||+++. | -.-|...-. ..-++++++.+.+ -..|+|+- ....+..| +.....|.
T Consensus 26 ~i~~l~~~~Gv~gi~~~-G-stGE~~~Lt-~~Er~~~~~~~~~~~~~~~~viag---------v~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 26 IVDYLIEKQGVDGLYVN-G-STGEGFLLS-VEERKQIAEIVAEAAKGKVTLIAH---------VGSLNLKESQELAKHAE 93 (288)
T ss_pred HHHHHHhcCCCCEEEEC-c-CCcCcccCC-HHHHHHHHHHHHHHhCCCCeEEec---------cCCCCHHHHHHHHHHHH
Confidence 34555555 7899884 2 111221111 1223344443332 23577752 22233445 45556788
Q ss_pred HhCccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 397 REGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 397 ~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
..|+|++|+..---...-+-+.++....|+..+
T Consensus 94 ~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 94 ELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999998655443334578899999999877
No 330
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=50.29 E-value=90 Score=32.10 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=58.1
Q ss_pred HHHHHHh-CCEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCc
Q 008319 324 LHSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (570)
Q Consensus 324 ldeIl~~-sDgImIgrGDLg--~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 400 (570)
++-.++. +||+++. |--| ..+..++-..+.+...+.+. -..|+++. .....++.-+.-.-.|...|+
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~g--------v~~~~~~~~~~~a~~a~~~G~ 96 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAG--------TGSNNTAEAIELTKRAEKAGA 96 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEec--------cCCccHHHHHHHHHHHHHcCC
Confidence 3444444 8999986 3322 22232333333333443332 24576653 223334433566677888999
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 008319 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
|++|+..-.-...-+-+.++..+.|+..++.
T Consensus 97 d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~ 127 (284)
T cd00950 97 DAALVVTPYYNKPSQEGLYAHFKAIAEATDL 127 (284)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHhcCCC
Confidence 9999987665555578899999999987653
No 331
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=50.14 E-value=98 Score=33.82 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHH---Hh-CCEEEEcCCCcccCCCC-CCHHHHHHHHHHHHHHcC
Q 008319 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII---SA-SDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSMQ 365 (570)
Q Consensus 291 sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl---~~-sDgImIgrGDLg~eig~-~~v~~~qk~Ii~~c~~~g 365 (570)
+-+++.++++.. +.+|++| |+.+.++.. +. +|+|.|+--- |-.+.- +.-.....++.+.. .-.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~~av-~~~ 283 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVAEAV-DKR 283 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHHHHh-CCC
Confidence 346676666654 5778888 344444333 33 8899886311 222211 11112222332221 123
Q ss_pred CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccc
Q 008319 366 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (570)
Q Consensus 366 KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (570)
+|+|.. ...- .-.|+..++..|+|++|+..-
T Consensus 284 i~vi~d---------GGIr---~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 284 VPIVFD---------SGVR---RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred CcEEee---------CCcC---CHHHHHHHHHcCCCEEEEcHH
Confidence 788853 2322 256899999999999998543
No 332
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=49.90 E-value=3.2e+02 Score=28.37 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=91.7
Q ss_pred CcccccCCCccCCCCCChhhHHHhhh-hhhcCCcEEEec-CCCCh-----hHHHHHHHHHHhcCCCceEEEeecCcchhh
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKF-GVDNQVDFYAVS-FVKDA-----KVVHELKDYLKSCNADIHVIVKIESADSIP 322 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~-~~~~gvd~I~~S-fV~sa-----~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~ 322 (570)
|-|...|+.. +|.+++..|.. -.+.|+|.|=+. |+... .|-.++...+... .+..+.+-.-+.++
T Consensus 7 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~d-- 78 (274)
T cd07938 7 RDGLQNEKTF-----IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRG-- 78 (274)
T ss_pred CCCCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHH--
Confidence 3455555544 45567766644 457899999665 43221 2333444444432 24555555433333
Q ss_pred hHHHHHHh-CCE--EEEcCCCcc--c--CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHH-H
Q 008319 323 NLHSIISA-SDG--AMVARGDLG--A--ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA-I 394 (570)
Q Consensus 323 NldeIl~~-sDg--ImIgrGDLg--~--eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~-n 394 (570)
++..++. .|. +++.-.|+- . ....++....-++.++.++++|+-+.+.-.+--+.-....-+...+.+++ .
T Consensus 79 -v~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~ 157 (274)
T cd07938 79 -AERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAER 157 (274)
T ss_pred -HHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHH
Confidence 3333333 554 344333421 1 11223555566788999999999875421110000011111233344544 4
Q ss_pred HHHhCccEEEecccccCCCCHHHHHHHHHHHHHH
Q 008319 395 AVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 428 (570)
Q Consensus 395 av~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~ 428 (570)
+...|+|.+-|. +|.=.-.|.++-+.+..+..+
T Consensus 158 ~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 158 LLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 567899999995 777667899988888888654
No 333
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=49.86 E-value=2.5e+02 Score=30.04 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCCChhhHHHh--------hhhhhcCCcEEEecCCC-------------Chh------------HHHHHHHHHHh-cCCC
Q 008319 263 PSITDKDWEDI--------KFGVDNQVDFYAVSFVK-------------DAK------------VVHELKDYLKS-CNAD 308 (570)
Q Consensus 263 p~lt~kD~~dI--------~~~~~~gvd~I~~SfV~-------------sa~------------dv~~vr~~l~~-~~~~ 308 (570)
..+|..|++.+ +.+.+.|+|+|-+.+.. ... -+.++-+.+++ .+.+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 36788887776 34567899999664322 221 11122222222 3555
Q ss_pred ceEEEeecCcch---------hhhHHHHHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-HcCCCEEEEcc
Q 008319 309 IHVIVKIESADS---------IPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIVATN 373 (570)
Q Consensus 309 i~IiaKIEt~~g---------v~NldeIl~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~-~~gKPvivaTq 373 (570)
.|..||-..+. .+..-+|++. .|.|=|..|...... ...+....+..+ ..+.||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEECC
Confidence 48888843321 1222233332 688888666543222 112223333322 24899987533
Q ss_pred chhhhhcCCCcChHHHhHHHHHHHhC-ccEEEec
Q 008319 374 MLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (570)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs 406 (570)
-.|. +.-.++..| +|.|++.
T Consensus 294 --------i~~~-----~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 294 --------YDAE-----SAEAALADGKADLVAFG 314 (338)
T ss_pred --------CCHH-----HHHHHHHcCCCCEEEeC
Confidence 1122 234667766 9999985
No 334
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.12 E-value=37 Score=33.14 Aligned_cols=35 Identities=0% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 115 EMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 115 e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
..+.+++++|++.+-|.--+.+.++..+.++.+++
T Consensus 18 ~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 18 VAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 33445899999999999999999988888777774
No 335
>PRK08185 hypothetical protein; Provisional
Probab=49.10 E-value=2.3e+02 Score=29.90 Aligned_cols=119 Identities=14% Similarity=0.240 Sum_probs=79.2
Q ss_pred CCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCC--
Q 008319 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-- 383 (570)
Q Consensus 307 ~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~-- 383 (570)
..+++........-++.+..-++. .+.||+.--+ +|+++-...-+++++.|+++|.+|=.-=-.+-.-.....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 468899999998877777766666 7789996444 577888888899999999999997221001100000000
Q ss_pred cC---hHHHhHHHHHHHh-CccEEEecccccCCCCHH-----HHHHHHHHHHHHh
Q 008319 384 PT---RAEVSDIAIAVRE-GADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 429 (570)
Q Consensus 384 Pt---rAEv~Dv~nav~~-G~D~vmLs~ETA~G~yP~-----eaV~~m~~I~~~a 429 (570)
.. .....+...++.. |+|++-.+--|+.|.||- --.+.+.+|....
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 00 1123445777877 999999999999999964 2355666665543
No 336
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=48.93 E-value=1.2e+02 Score=31.49 Aligned_cols=97 Identities=15% Similarity=0.059 Sum_probs=56.4
Q ss_pred HHHHHH-h-CCEEEEcC--CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH-HhHHHHHHHh
Q 008319 324 LHSIIS-A-SDGAMVAR--GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVRE 398 (570)
Q Consensus 324 ldeIl~-~-sDgImIgr--GDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~ 398 (570)
++..++ . +|||+++= |+ +..|..++-..+.+..++.++ -..||+.- ...++..| +.-.-.|...
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE-~~~Ls~eEr~~~~~~~~~~~~-~~~~viag---------vg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGE-AFLLSTEEKKQVLEIVAEEAK-GKVKLIAQ---------VGSVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHHhcCCCCEEEECCCccc-cccCCHHHHHHHHHHHHHHhC-CCCCEEec---------CCCCCHHHHHHHHHHHHHc
Confidence 345555 4 89999851 11 112333344444444444443 23677753 22334444 5556677899
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 008319 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
|+|++|+..---...-+-+.++....|+..+.-
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~l 131 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREIIDSADN 131 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCC
Confidence 999999975433333346888899999887653
No 337
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=48.91 E-value=91 Score=32.17 Aligned_cols=170 Identities=17% Similarity=0.184 Sum_probs=87.4
Q ss_pred hHHHHHHh-CCEEEEcC--CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhC
Q 008319 323 NLHSIISA-SDGAMVAR--GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG 399 (570)
Q Consensus 323 NldeIl~~-sDgImIgr--GDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G 399 (570)
+++..++. +||++++= |+ +..|..++-..+.+.+++.+ .-..|+++.+ ....|+.-+.-.-.+...|
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE-~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv--------~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGE-FYSLTDEERKELLEIVVEAA-AGRVPVIAGV--------GANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTT-GGGS-HHHHHHHHHHHHHHH-TTSSEEEEEE--------ESSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCcc-cccCCHHHHHHHHHHHHHHc-cCceEEEecC--------cchhHHHHHHHHHHHhhcC
Confidence 34555555 89999951 11 11222233333333333332 2346777642 2223333355566778899
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCCh-hHHHHHHHHHHHhhcCCcEEE--EcCC-
Q 008319 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHM-GDMFAFHSTTMANTLNTPIIV--FTRT- 475 (570)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~-~~~ia~~av~~a~~~~a~Iiv--~T~s- 475 (570)
+|++|+..=--...-+-+.+++.+.|+...+..+.. |+.-.. ...++ .+.+ .++++ ++. |+- .+..
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~i---Yn~P~~-tg~~ls~~~l----~~L~~-~~n-v~giK~s~~~ 166 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIII---YNNPAR-TGNDLSPETL----ARLAK-IPN-VVGIKDSSGD 166 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEE---EEBHHH-HSSTSHHHHH----HHHHT-STT-EEEEEESSSB
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEE---EECCCc-cccCCCHHHH----HHHhc-CCc-EEEEEcCchh
Confidence 999998755444556788899999999666543211 110000 01111 2222 45666 443 222 2222
Q ss_pred -hHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEe
Q 008319 476 -GSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYM 515 (570)
Q Consensus 476 -G~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~ 515 (570)
-+..+.+.+..|...|+.- .+..+...| ..|......
T Consensus 167 ~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l--~~G~~G~is 204 (289)
T PF00701_consen 167 LERLIQLLRAVGPDFSVFCG-DDELLLPAL--AAGADGFIS 204 (289)
T ss_dssp HHHHHHHHHHSSTTSEEEES-SGGGHHHHH--HTTSSEEEE
T ss_pred HHHHHHHhhhcccCeeeecc-ccccccccc--cccCCEEEE
Confidence 2455556667788888876 555555444 345555443
No 338
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=48.87 E-value=2.7e+02 Score=27.30 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=79.3
Q ss_pred ChhhHHHh-hhhhhcCCcEEEec-----CCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhh---HHHHHHh-CCEEE
Q 008319 266 TDKDWEDI-KFGVDNQVDFYAVS-----FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPN---LHSIISA-SDGAM 335 (570)
Q Consensus 266 t~kD~~dI-~~~~~~gvd~I~~S-----fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~N---ldeIl~~-sDgIm 335 (570)
+..|..++ +...+.|++++.+. |-.+.+++..+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 34455444 44557899998653 346777888887764 5667654 23333 4444444 89999
Q ss_pred EcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCH
Q 008319 336 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 415 (570)
Q Consensus 336 IgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP 415 (570)
++--||. +...+++++.+...|..+++.+. +-. ++..+...|+|.+..++.+. ..++
T Consensus 100 l~~~~~~--------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~---e~~~~~~~g~~~i~~t~~~~-~~~~ 156 (217)
T cd00331 100 LIVAALD--------DEQLKELYELARELGMEVLVEVH-----------DEE---ELERALALGAKIIGINNRDL-KTFE 156 (217)
T ss_pred EeeccCC--------HHHHHHHHHHHHHcCCeEEEEEC-----------CHH---HHHHHHHcCCCEEEEeCCCc-cccC
Confidence 8644442 14567888888989998876421 223 36677888999999885432 2223
Q ss_pred HHHHHHHHHHHHH
Q 008319 416 LKAVKVMHTVALR 428 (570)
Q Consensus 416 ~eaV~~m~~I~~~ 428 (570)
... ..+.+++..
T Consensus 157 ~~~-~~~~~l~~~ 168 (217)
T cd00331 157 VDL-NTTERLAPL 168 (217)
T ss_pred cCH-HHHHHHHHh
Confidence 222 444555443
No 339
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=48.72 E-value=30 Score=35.95 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=45.0
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcc--hhhhHHHHHHh-CCEEEEc
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD--SIPNLHSIISA-SDGAMVA 337 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~--gv~NldeIl~~-sDgImIg 337 (570)
+-++.+++..+.+.|+|+|.+..+ ++++++++.+.+. .++++.| -- -.+|+.++++. +|+|-++
T Consensus 184 ev~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~A----sGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 184 EVESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEA----SGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred EeCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 335667788888999999999876 5566666655542 2344444 22 35699999988 9999984
No 340
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=48.55 E-value=3e+02 Score=27.78 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=68.5
Q ss_pred hHHHhhhhhhcCCcEEEec--CCCChhHHHHHHHHHHhcCCCceEEEeecC--------------------c-chhhhHH
Q 008319 269 DWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIES--------------------A-DSIPNLH 325 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt--------------------~-~gv~Nld 325 (570)
+.+|++..+..|+|.|.++ +.++++.+.++.+.+ +.+ .+++-+.- . ..++-++
T Consensus 85 s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (253)
T PRK02083 85 SVEDARRLLRAGADKVSINSAAVANPELISEAADRF---GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAK 160 (253)
T ss_pred CHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHH
Confidence 5566666677899988776 335666555554443 322 12222211 1 1122223
Q ss_pred HHHHh-CCEEEEcCCC-cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHH-hCccE
Q 008319 326 SIISA-SDGAMVARGD-LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADA 402 (570)
Q Consensus 326 eIl~~-sDgImIgrGD-Lg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~ 402 (570)
++.+. +|.+++-.-+ =|..-|+ ++ +.+-+.++..+.|+|.+. ..-+ ..|+..+.. .|+|+
T Consensus 161 ~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~G---------Gv~s---~~d~~~~~~~~G~~g 223 (253)
T PRK02083 161 EVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIASG---------GAGN---LEHFVEAFTEGGADA 223 (253)
T ss_pred HHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEEC---------CCCC---HHHHHHHHHhCCccE
Confidence 33333 6777664211 1222232 22 222333455689999753 3333 446666776 59999
Q ss_pred EEecccccCCCCHHHHH
Q 008319 403 VMLSGETAHGKFPLKAV 419 (570)
Q Consensus 403 vmLs~ETA~G~yP~eaV 419 (570)
+|...==-.|.++++.+
T Consensus 224 vivg~al~~~~~~~~~~ 240 (253)
T PRK02083 224 ALAASIFHFGEITIGEL 240 (253)
T ss_pred EeEhHHHHcCCCCHHHH
Confidence 99964334688887654
No 341
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=48.49 E-value=85 Score=40.10 Aligned_cols=118 Identities=16% Similarity=0.085 Sum_probs=78.7
Q ss_pred hhhcCCcEEEecC---CCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHH-HHHh-CCEEEEcCCCccc-------
Q 008319 276 GVDNQVDFYAVSF---VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHS-IISA-SDGAMVARGDLGA------- 343 (570)
Q Consensus 276 ~~~~gvd~I~~Sf---V~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~Nlde-Il~~-sDgImIgrGDLg~------- 343 (570)
.+..|+|.|..|- +.|.+|+.++-.-|++.+...+|-.|+=...++..+.. ++++ +|.|.|.=+|=|.
T Consensus 961 ~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~ 1040 (1485)
T PRK11750 961 YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTS 1040 (1485)
T ss_pred CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHH
Confidence 3467899887664 45778877777778888888899999987778877763 4444 9999998665432
Q ss_pred --CCCCC---CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 344 --ELPIE---DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 344 --eig~~---~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
..|++ -+..+++.+...--+....+++..++. | -.|++-|+..|||.+-.
T Consensus 1041 ~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~---------t---~~Dv~kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1041 VKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLK---------T---GLDVIKAAILGAESFGF 1095 (1485)
T ss_pred HhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcC---------C---HHHHHHHHHcCCccccc
Confidence 22222 355555555554444445556544422 1 26899999999998654
No 342
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=48.49 E-value=3.3e+02 Score=28.19 Aligned_cols=85 Identities=20% Similarity=0.353 Sum_probs=52.9
Q ss_pred CceEEEee--cCcchhhhHHHHHHh----CCEEEEcCCCcccCCCC--------CCHHHHHHHHHHHHHHc-CCCEEEEc
Q 008319 308 DIHVIVKI--ESADSIPNLHSIISA----SDGAMVARGDLGAELPI--------EDVPLLQEDIIRRCRSM-QKPVIVAT 372 (570)
Q Consensus 308 ~i~IiaKI--Et~~gv~NldeIl~~----sDgImIgrGDLg~eig~--------~~v~~~qk~Ii~~c~~~-gKPvivaT 372 (570)
+.+++++| .+++.+...-+.++. +|+|=+. +..|. ..-+..-.+|+++.++. ++|+.+=
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vK- 163 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAK- 163 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEE-
Confidence 46799999 555555555555542 6777663 22221 12345557888888765 8898863
Q ss_pred cchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecc
Q 008319 373 NMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (570)
Q Consensus 373 qmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (570)
- .|+-.+..+++. +...|+|++.+++
T Consensus 164 -------i--~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 164 -------L--SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred -------C--CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 1 244456566665 5568999999875
No 343
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=48.19 E-value=2.3e+02 Score=29.78 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=74.4
Q ss_pred CCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE-ccch--hhhhcCC
Q 008319 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNML--ESMIDHP 382 (570)
Q Consensus 307 ~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva-TqmL--eSM~~~~ 382 (570)
.+++|.........++.+..-+.. .+.||+. -| .+|+++=...-+++++.|+..|.+|=.= .++- |.-....
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~D---gS-~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMID---GS-ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE----T-TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCccccccc---CC-cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 469999999998887777776666 8899995 33 5677777788899999999999887321 1111 1111110
Q ss_pred Cc---ChHHHhHHHHHH-HhCccEEEecccccCCCCHH-----HHHHHHHHHHHHh
Q 008319 383 TP---TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 429 (570)
Q Consensus 383 ~P---trAEv~Dv~nav-~~G~D~vmLs~ETA~G~yP~-----eaV~~m~~I~~~a 429 (570)
.- ...+..++..++ .-|+|++-.+--|+.|.|+- -=...+.+|.+.+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 00 001233455565 67999999999999999985 2344445554444
No 344
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.15 E-value=41 Score=31.72 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=59.1
Q ss_pred hhhhhcCCcEEEecCCCCh------hHHHHHHHHHHhcCCCceEEE-eecC--------------cchhhhHHHHHHh--
Q 008319 274 KFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIV-KIES--------------ADSIPNLHSIISA-- 330 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa------~dv~~vr~~l~~~~~~i~Iia-KIEt--------------~~gv~NldeIl~~-- 330 (570)
+++.+.|+++|-+.+.... .++.++++++++.|-.+.-+. .... .++++.+.+.++.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 4566889998877755332 346788889988776533222 1111 1235666666655
Q ss_pred ---CCEEEEcCC--CcccCCCC----CCHHHHHHHHHHHHHHcCCCEE
Q 008319 331 ---SDGAMVARG--DLGAELPI----EDVPLLQEDIIRRCRSMQKPVI 369 (570)
Q Consensus 331 ---sDgImIgrG--DLg~eig~----~~v~~~qk~Ii~~c~~~gKPvi 369 (570)
++.+.+..| +....... +.+....+++.+.+.+.|..+.
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 129 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA 129 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE
Confidence 678888877 32222222 3455666788888888896554
No 345
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=48.14 E-value=3e+02 Score=29.30 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=78.3
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhC--CEEEEcC-CCccc----
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS--DGAMVAR-GDLGA---- 343 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~s--DgImIgr-GDLg~---- 343 (570)
...+...+.|+|+|..|-+.++.| ++-...+.. .+.++++ +..|++|-+... -.=||+. |+.|.
T Consensus 87 ~Ea~~L~~~GvDiID~Te~lrpad--~~~~~~K~~-f~~~fma------d~~~l~EAlrai~~GadmI~Ttge~gtg~v~ 157 (293)
T PRK04180 87 VEAQILEALGVDYIDESEVLTPAD--EEYHIDKWD-FTVPFVC------GARNLGEALRRIAEGAAMIRTKGEAGTGNVV 157 (293)
T ss_pred HHHHHHHHcCCCEEeccCCCCchH--HHHHHHHHH-cCCCEEc------cCCCHHHHHHHHHCCCCeeeccCCCCCccHH
Confidence 334444578999999999988843 333333332 2677777 566777766651 1223332 22111
Q ss_pred ---------------CCCC--CCHHHH------HHHHHHHH-HHcCCCEE-EEccchhhhhcCCCcChHHHhHHHHHHHh
Q 008319 344 ---------------ELPI--EDVPLL------QEDIIRRC-RSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVRE 398 (570)
Q Consensus 344 ---------------eig~--~~v~~~------qk~Ii~~c-~~~gKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 398 (570)
=.|+ +.+... =-.+++.. +....||+ +| ....-|.+ |+..+...
T Consensus 158 ~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--------eGGI~TPe---daa~vme~ 226 (293)
T PRK04180 158 EAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--------AGGIATPA---DAALMMQL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--------eCCCCCHH---HHHHHHHh
Confidence 0011 111110 00233333 33468987 33 23333333 46677889
Q ss_pred CccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 399 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 399 G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
|+|++++.+.-.....|.+.++.+.......
T Consensus 227 GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 227 GADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred CCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 9999999877766778999998877765443
No 346
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=47.95 E-value=2.6e+02 Score=26.79 Aligned_cols=131 Identities=15% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 349 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~ 349 (570)
++++.+.+.|+|+|-++ ...-+...++..+ +.+..+-+-+-|. +.+.+..+. +|.+++++=-=+..=+-..
T Consensus 64 ~~~~la~~~g~~GvHl~--~~~~~~~~~r~~~---~~~~~ig~s~h~~---~e~~~a~~~g~dyi~~~~v~~t~~k~~~~ 135 (196)
T TIGR00693 64 DRVDLALALGADGVHLG--QDDLPASEARALL---GPDKIIGVSTHNL---EELAEAEAEGADYIGFGPIFPTPTKKDPA 135 (196)
T ss_pred CHHHHHHHcCCCEEecC--cccCCHHHHHHhc---CCCCEEEEeCCCH---HHHHHHhHcCCCEEEECCccCCCCCCCCC
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHH
Q 008319 350 VPLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~g-KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (570)
-+.--+.+-+.+.... +|++....+=. .++..+...|+|++.+.+.-..-+.|.++++.|
T Consensus 136 ~~~g~~~l~~~~~~~~~~pv~a~GGI~~-------------~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 136 PPAGVELLREIAATSIDIPIVAIGGITL-------------ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEECCcCH-------------HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
No 347
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=47.88 E-value=3.5e+02 Score=28.30 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=88.7
Q ss_pred CcccccCCCccCCCCCChhhHHHhhh-hhhcCCcEEEe-cCCCC-----hhHHHHHHHHHHhcCCCceEEEeecCcchhh
Q 008319 250 RRHLNVRGKSANLPSITDKDWEDIKF-GVDNQVDFYAV-SFVKD-----AKVVHELKDYLKSCNADIHVIVKIESADSIP 322 (570)
Q Consensus 250 ~KgIn~p~~~~~lp~lt~kD~~dI~~-~~~~gvd~I~~-SfV~s-----a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~ 322 (570)
|.|-.-|+.. ++..++..|.. -.+.|++.|=+ ||+.. ..|-.++-..+... ....+.+..-+.++++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie 86 (287)
T PRK05692 13 RDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLE 86 (287)
T ss_pred CccccCcCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHH
Confidence 4444445443 46677766644 45789999866 45532 11112222223221 2344444333444443
Q ss_pred hHHHHHHh-CCEEEE--cCCCc----ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCc---ChHHHhH-
Q 008319 323 NLHSIISA-SDGAMV--ARGDL----GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP---TRAEVSD- 391 (570)
Q Consensus 323 NldeIl~~-sDgImI--grGDL----g~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~P---trAEv~D- 391 (570)
. -++. .|.+-+ .-.|+ -.....++.....+.+++.++++|..+...=.+ ....|.- +...+.+
T Consensus 87 ~---A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~ 160 (287)
T PRK05692 87 A---ALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADV 160 (287)
T ss_pred H---HHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHH
Confidence 3 2333 564433 32222 111223455666789999999999987421000 0111222 2233333
Q ss_pred HHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 392 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 392 v~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+-.+...|+|.+.|. +|.=--.|.++-+.+..+.++.
T Consensus 161 ~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 161 AERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHhC
Confidence 345667899999995 7776668999999988887654
No 348
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=47.78 E-value=2.7e+02 Score=29.08 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=84.9
Q ss_pred CCCCChhhHHHhhhhhhcCCcEEEec---------C-----CCChhHH-HHHHHHHHhcCCCceEEEee------cCcch
Q 008319 262 LPSITDKDWEDIKFGVDNQVDFYAVS---------F-----VKDAKVV-HELKDYLKSCNADIHVIVKI------ESADS 320 (570)
Q Consensus 262 lp~lt~kD~~dI~~~~~~gvd~I~~S---------f-----V~sa~dv-~~vr~~l~~~~~~i~IiaKI------Et~~g 320 (570)
+..+|-+|.---+.+-+.|+|.|.+. + | +-++. ...+.. .+.-.+..|++-+ .-.++
T Consensus 17 i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~v-tldem~~h~~aV-~rg~~~~~vv~DmPf~sy~~~e~a 94 (263)
T TIGR00222 17 IVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPV-TVADMIYHTAAV-KRGAPNCLIVTDLPFMSYATPEQA 94 (263)
T ss_pred EEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCc-CHHHHHHHHHHH-HhhCCCceEEeCCCcCCCCCHHHH
Confidence 34567788877777778899998764 1 1 11222 222332 2323455565222 23468
Q ss_pred hhhHHHHHHh--CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-------EEccchh-hhhcCCCcChHH--
Q 008319 321 IPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-------VATNMLE-SMIDHPTPTRAE-- 388 (570)
Q Consensus 321 v~NldeIl~~--sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi-------vaTqmLe-SM~~~~~PtrAE-- 388 (570)
++|...+++. +|+|=|--| ..+...++...+.|.||. ..-..+- -......+.+++
T Consensus 95 ~~na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~ 162 (263)
T TIGR00222 95 LKNAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKL 162 (263)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHH
Confidence 9999999984 889988533 224456688999999998 2212121 112222233333
Q ss_pred HhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
+.|.-.+...|+|+++|-+ -| -+....|+++..
T Consensus 163 i~~A~a~e~AGA~~ivlE~------vp---~~~a~~It~~l~ 195 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLEC------VP---VELAAKITEALA 195 (263)
T ss_pred HHHHHHHHHcCCCEEEEcC------Cc---HHHHHHHHHhCC
Confidence 5666666688999999932 13 145555665555
No 349
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=47.63 E-value=3.2e+02 Score=28.81 Aligned_cols=117 Identities=8% Similarity=0.044 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
.+...|+..|.|+.+. .|..+.-..+...-..|++.+...+ .| .++.+...+++++- ..++.
T Consensus 81 alA~~a~~~G~~~~v~-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~~-g~~~~ 142 (317)
T TIGR02991 81 ALAYAAAEEGVRATIC-----------MSELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVADR-GLTML 142 (317)
T ss_pred HHHHHHHHhCCCEEEE-----------cCCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CCEee
Confidence 5566899999999874 1222222345556678999887753 23 45666666665432 22211
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHHh----cCCCCeEEEEeCC
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQ 497 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls~----~RP~~pIiavt~~ 497 (570)
.+ +.+ ....+.-..-+.++.++++- .||+..-+|.++.-+++ ++|...|+++-+.
T Consensus 143 ~~-~~n------~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 143 PP-FDH------PDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred CC-CCC------hHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 11 111 11223233345677777754 68999889988777665 4699999999985
No 350
>PRK08526 threonine dehydratase; Provisional
Probab=47.62 E-value=2.3e+02 Score=31.22 Aligned_cols=119 Identities=9% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|..+....+...-..|++.++. |...-++++...+++++-. ..+.
T Consensus 82 avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~g-~~~v 143 (403)
T PRK08526 82 GVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKENN-LTFI 143 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhcC-CEee
Confidence 4566799999998874 23333333455567789988764 3345677777666654422 2221
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcCC--cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a--~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~ 499 (570)
.+ |.+. .....-..-+.++.++++. .||+..-+|.++--++ ..+|.+.||++-+...
T Consensus 144 ~p-~~~~------~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~ 206 (403)
T PRK08526 144 HP-FEDE------EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGA 206 (403)
T ss_pred CC-CCCH------HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11 1110 1111122335677777754 7888888888765554 4579999999998643
No 351
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=47.60 E-value=98 Score=30.93 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
+..+++.+.+.+.++.+-+--+.. .-+|++++++-.|.|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 77 a~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 77 AEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345677788888877766544433 347888888889998886322 245667889999999999875
No 352
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=47.19 E-value=48 Score=34.13 Aligned_cols=84 Identities=30% Similarity=0.345 Sum_probs=52.3
Q ss_pred CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccccc
Q 008319 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410 (570)
Q Consensus 331 sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA 410 (570)
+..+|---.-.|.-.|+.. +...+.|++. ...|||+ ....-+ -+|.+.+.+.|+|+|++..--|
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~~---~~vPvIv---------DAGiG~---pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIER---ADVPVIV---------DAGIGT---PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHHH---GSSSBEE---------ES---S---HHHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHHh---cCCcEEE---------eCCCCC---HHHHHHHHHcCCceeehhhHHh
Confidence 4466663333333344444 3444444443 4899997 334333 3578899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 008319 411 HGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 411 ~G~yP~eaV~~m~~I~~~aE 430 (570)
..+.|+.-.+-|+.-++.-.
T Consensus 209 ~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999988888876655433
No 353
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=47.00 E-value=4.3e+02 Score=29.56 Aligned_cols=246 Identities=17% Similarity=0.187 Sum_probs=121.4
Q ss_pred cEEEEeecCCCeeeeccCCCceeecCCCEEEEEEecCCCCccEEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeE
Q 008319 158 AVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLV 237 (570)
Q Consensus 158 ~i~I~~Dl~GpkiR~G~~~~~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i 237 (570)
-.+.++.-.||..++|.+ ..+..|..+-.... ......+-+.+. =.+.+++|+.|..-+....+.|- +.+
T Consensus 28 ~~g~~~~~~g~~~~ige~---~~i~~~~~~~eV~~--~~~~~~~~~~~~-~~~gi~~g~~v~~~~~~~~v~vg----~~~ 97 (432)
T PRK06793 28 VQEQFFVAKGPKAKIGDV---CFVGEHNVLCEVIA--IEKENNMLLPFE-QTEKVCYGDSVTLIAEDVVIPRG----NHL 97 (432)
T ss_pred EEEEEEEEEcCCCCcCCE---EEECCCCEEEEEEE--ecCCcEEEEEcc-CccCCCCCCEEEECCCccEEEcC----Hhh
Confidence 466788888888888866 33322221111111 011122223332 23678999999987777666542 445
Q ss_pred EEEEEeC-cEeccCcccccC--CCccCCCCCChhhHHHhhhhhhcCC-------------cEEEecCCCChhHHHHHHHH
Q 008319 238 KCIVVDG-GELKSRRHLNVR--GKSANLPSITDKDWEDIKFGVDNQV-------------DFYAVSFVKDAKVVHELKDY 301 (570)
Q Consensus 238 ~~~v~~g-G~l~s~KgIn~p--~~~~~lp~lt~kD~~dI~~~~~~gv-------------d~I~~SfV~sa~dv~~vr~~ 301 (570)
.-+|.++ |.--..++...+ ...+.-|+...-+...+....+.|+ .+..+.-..+.... -++..
T Consensus 98 lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTt-Ll~~I 176 (432)
T PRK06793 98 LGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKST-LLGMI 176 (432)
T ss_pred ccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHH-HHHHH
Confidence 5556653 443333322111 1122233333333333332233333 22222211222111 12223
Q ss_pred HHhcCCCceEEEeec-C-cchhhhHHHHHHhC---C-EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccch
Q 008319 302 LKSCNADIHVIVKIE-S-ADSIPNLHSIISAS---D-GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 375 (570)
Q Consensus 302 l~~~~~~i~IiaKIE-t-~~gv~NldeIl~~s---D-gImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmL 375 (570)
......+..+|+-|. . .+.-+.+...+... . .++++..|-+.-+- .+.+.+.-.+.+.-+..|++|.+ +|
T Consensus 177 a~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r-~ra~~~a~~iAEyfr~~G~~VLl---il 252 (432)
T PRK06793 177 AKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQ-LRAAKLATSIAEYFRDQGNNVLL---MM 252 (432)
T ss_pred hccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHcCCcEEE---Ee
Confidence 333333455666552 2 22223334444331 1 35555555432211 24566666777888888999998 67
Q ss_pred hhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 008319 376 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (570)
+||.....+- +-+. .+.+|...+.||.-....+.++++++.+.
T Consensus 253 DslTr~a~A~--------reis------l~~~e~p~~G~~~~~~s~l~~L~ERag~~ 295 (432)
T PRK06793 253 DSVTRFADAR--------RSVD------IAVKELPIGGKTLLMESYMKKLLERSGKT 295 (432)
T ss_pred cchHHHHHHH--------HHHH------HHhcCCCCCCeeeeeeccchhHHHHhccC
Confidence 7766544332 2222 23467776778877766689999888763
No 354
>PRK06801 hypothetical protein; Provisional
Probab=46.90 E-value=2.1e+02 Score=30.16 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=77.6
Q ss_pred CCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCC--
Q 008319 306 NADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-- 382 (570)
Q Consensus 306 ~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~-- 382 (570)
+..+++........-++.+++-++. .+.||+.- -.+++++-...-+++.+.|+.+|.+|=..=..+-.....+
T Consensus 72 ~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~----S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~ 147 (286)
T PRK06801 72 RHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDG----STLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALY 147 (286)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcC----CCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCccc
Confidence 3468899999998777777777766 88999942 2357777777788999999999998722211111100000
Q ss_pred Cc----ChHHHhHHHHHH-HhCccEEEecccccCCCCHH---HHHHHHHHHHHH
Q 008319 383 TP----TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL---KAVKVMHTVALR 428 (570)
Q Consensus 383 ~P----trAEv~Dv~nav-~~G~D~vmLs~ETA~G~yP~---eaV~~m~~I~~~ 428 (570)
.+ ......+...++ ..|+|++-++--|+.|+|+- .-...+..|...
T Consensus 148 ~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~ 201 (286)
T PRK06801 148 GEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ 201 (286)
T ss_pred CCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh
Confidence 00 011234456667 68999999999999999954 234555555443
No 355
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=46.88 E-value=3.1e+02 Score=27.40 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=30.4
Q ss_pred HHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHh-CccEEEecccccCCCCHHHHH
Q 008319 362 RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPLKAV 419 (570)
Q Consensus 362 ~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs~ETA~G~yP~eaV 419 (570)
+..+.|++.+ ...-+. .|+..+... |+|++|+..----|.+..+.+
T Consensus 190 ~~~~~pvia~---------GGi~~~---~di~~~l~~~g~dgv~vg~al~~~~~~~~~~ 236 (243)
T cd04731 190 SAVNIPVIAS---------GGAGKP---EHFVEAFEEGGADAALAASIFHFGEYTIAEL 236 (243)
T ss_pred hhCCCCEEEe---------CCCCCH---HHHHHHHHhCCCCEEEEeHHHHcCCCCHHHH
Confidence 3458999964 333333 345555665 999999986666788776543
No 356
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.87 E-value=2.5e+02 Score=30.62 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccch
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 375 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmL 375 (570)
..++++.++ ..+.++.-+-+.+.++-+.+ .+|.+.||-+++.. -.+++.+.+.||||++.|.
T Consensus 155 ~~L~~~~~e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G-- 216 (352)
T PRK13396 155 ELLAAAREA--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG-- 216 (352)
T ss_pred HHHHHHHHH--cCCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC--
Confidence 344444443 35778887777766655544 58999999766532 3457888889999998644
Q ss_pred hhhhcCCCcChHHHhHHHHHHHh-CccEEEec
Q 008319 376 ESMIDHPTPTRAEVSDIAIAVRE-GADAVMLS 406 (570)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs 406 (570)
..+|-.|+...+..+.. |.+-++|.
T Consensus 217 ------~~~t~ee~~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 217 ------MAATIDEWLMAAEYILAAGNPNVILC 242 (352)
T ss_pred ------CCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 34467888777777764 77666665
No 357
>PLN02565 cysteine synthase
Probab=46.85 E-value=2.9e+02 Score=29.30 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 008319 357 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 436 (570)
Q Consensus 357 Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (570)
+...|+..|.|+.+. .|..+....+...-..|++.++...+ ...-++++...++.++-...++..
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~----~~~~~~~~~a~~l~~~~~~~~~~~ 146 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA----KGMKGAVQKAEEILAKTPNSYILQ 146 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC----CCcHHHHHHHHHHHHhCCCcEeec
Confidence 445899999999874 45555556677788899999875332 122356666666554421222212
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 437 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 437 ~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
+ |.+.. .+.--...-+.++.++++ . .||+..-+|.+.--++ .++|.+.|+++-+..
T Consensus 147 q-~~n~~-----n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 147 Q-FENPA-----NPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred c-cCCHh-----HHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 2 11110 010002223456667765 4 8888888888775555 457999999999964
No 358
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=46.85 E-value=1.3e+02 Score=31.14 Aligned_cols=93 Identities=18% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHhhhhhhcCCcEEEec------CCCChhHHHH-HHHHHHhcCCCceEEEeecC---cchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDgImIgrG 339 (570)
+.++|.++.|+|+|++. +.=|.++-.+ ++...+..+ . |++.+-+ .++++-...--+. +|++|+.+-
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34467789999998763 2223333333 344444443 2 6777743 3444444433333 899998664
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 340 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 340 DLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+....+-+.+....+.+.+ ..|+++.
T Consensus 101 ~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 101 YYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 43211112334444444444 7999974
No 359
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=46.83 E-value=2.3e+02 Score=27.86 Aligned_cols=148 Identities=22% Similarity=0.246 Sum_probs=81.8
Q ss_pred CCCChhhHHH-hhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhh-------hHHHHHHh-CCE
Q 008319 263 PSITDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP-------NLHSIISA-SDG 333 (570)
Q Consensus 263 p~lt~kD~~d-I~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~-------NldeIl~~-sDg 333 (570)
|..|+.|.+. ++.+.++++|.|.++ +..+..+++++.. ..+.+-.=+=.+.|-. ..++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 6778888644 466778899999887 6667777777754 3455555554444433 34444444 676
Q ss_pred EEEcCCCcccCC-CC-CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHH-HHHHhCccEEEec-ccc
Q 008319 334 AMVARGDLGAEL-PI-EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLS-GET 409 (570)
Q Consensus 334 ImIgrGDLg~ei-g~-~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~-nav~~G~D~vmLs-~ET 409 (570)
|-+-- +.|.-. +. +.+..-.+++.+.|. |+|+.+ ++|. +.-+..++...+ -++..|+|.+=-| |=+
T Consensus 86 vdvv~-~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 86 IDMVI-NIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred EEEee-cHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 55421 111100 11 224444455555554 788754 2222 111334544443 4677899988654 112
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 008319 410 AHGKFPLKAVKVMHTVAL 427 (570)
Q Consensus 410 A~G~yP~eaV~~m~~I~~ 427 (570)
+.|- -++.|+.|.+++.
T Consensus 156 ~~~a-t~~~v~~~~~~~~ 172 (203)
T cd00959 156 PGGA-TVEDVKLMKEAVG 172 (203)
T ss_pred CCCC-CHHHHHHHHHHhC
Confidence 2222 2478888888876
No 360
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=46.81 E-value=59 Score=34.11 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=47.3
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEc
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 337 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIg 337 (570)
..++.+.+++.|+|.|.+=.. +++++.+.-+.+++.+.++ +||=.-|+ +|+.++.+. +|.|.+|
T Consensus 197 tleea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDKF-TPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 456677788999999999864 7888888877786545554 34444444 588888887 9999886
No 361
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=46.76 E-value=73 Score=32.52 Aligned_cols=69 Identities=23% Similarity=0.158 Sum_probs=41.9
Q ss_pred hhhhhcCCcEEEecCCCCh---hHHHHHHHHHHhcCCCceEEEe--ecCcchhhhHHHHHHh-CCEEEEcCCCcccCCC
Q 008319 274 KFGVDNQVDFYAVSFVKDA---KVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVARGDLGAELP 346 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa---~dv~~vr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~-sDgImIgrGDLg~eig 346 (570)
+.+.+.|+|+|.+---... .+++.+++.-+.. .+++||+- |.| .+...+.+.. +|++|||||=|.-.+.
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s---~eda~e~l~~GAd~VmvgR~~l~~~~~ 229 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDD---IESAKEMLKAGADFVSVARAILKGNVE 229 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCC---HHHHHHHHHhCCCeEEEcHhhccCCcC
Confidence 4456899999987522222 3566666654432 23778872 333 2334444445 9999999987765544
No 362
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=46.53 E-value=2.6e+02 Score=29.95 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHc--------CCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecccc
Q 008319 351 PLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 409 (570)
Q Consensus 351 ~~~qk~Ii~~c~~~--------gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 409 (570)
+....++++.+++. .+|+++ .-.|..+..++.+++. +...|+|++.+.+-+
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~v--------KLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLV--------KIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 45556666666543 289997 4566666667777776 677899999998754
No 363
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=46.43 E-value=96 Score=27.88 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE
Q 008319 290 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 369 (570)
Q Consensus 290 ~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi 369 (570)
.|.=-+...+++.+..|.++.|.|.=|+ .+++-+...|.+++| |.+....+++-+.+...|+||-
T Consensus 13 STSlLV~Km~~aA~~kg~~~~I~A~s~~-----e~~~~~~~~DvvLlG----------PQv~y~~~~~~~~~~~~giPV~ 77 (102)
T COG1440 13 STSLLVTKMKKAAESKGKDVTIEAYSET-----ELSEYIDNADVVLLG----------PQVRYMLKQLKEAAEEKGIPVE 77 (102)
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEechh-----HHHHhhhcCCEEEEC----------hHHHHHHHHHHHHhcccCCCeE
Confidence 3444567788899999999999886655 455556689999998 5788888999999999999997
Q ss_pred E
Q 008319 370 V 370 (570)
Q Consensus 370 v 370 (570)
+
T Consensus 78 v 78 (102)
T COG1440 78 V 78 (102)
T ss_pred E
Confidence 6
No 364
>PRK11761 cysM cysteine synthase B; Provisional
Probab=46.25 E-value=3.3e+02 Score=28.37 Aligned_cols=121 Identities=9% Similarity=0.032 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|....-..+...-..|++.+....+ +.| .++.+...++.++- ..++.
T Consensus 77 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~~~~ 140 (296)
T PRK11761 77 ALAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EGKVL 140 (296)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CCEec
Confidence 4556899999999875 12222223345556789999988642 333 34444444443321 11111
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHH----HHHHhcCCCCeEEEEeCCH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMA----VILSHYRPSSTIFAFTNQE 498 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA----~~ls~~RP~~pIiavt~~~ 498 (570)
.+ |.+. . .+..-...-+.++.++++ . .||+.+-+|.+. +.+..++|.+.|+++-+..
T Consensus 141 ~~-~~n~----~-~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 141 DQ-FANP----D-NPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred CC-CCCh----h-hHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 1110 0 010001122346666664 4 788888899665 5556678999999999964
No 365
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=46.24 E-value=2.7e+02 Score=30.58 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|..+-...+.+.-..|++.+... ...-++++...++..+-. .+..
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~------~~~~~a~~~a~~~a~~~g-~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD------LNYDDAVRLAWKMAQENG-WVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC------CCHHHHHHHHHHHHHhcC-cEee
Confidence 4567899999999875 222222345667788999987763 234578888877765422 2111
Q ss_pred CC----CCCCcccCCCCChhHHHHHHHHHHHhhcC------C-cEEEEcCChHHHHHHHh-----cCCCCe-EEEEeCC
Q 008319 436 SI----TPPTQFSAHKSHMGDMFAFHSTTMANTLN------T-PIIVFTRTGSMAVILSH-----YRPSST-IFAFTNQ 497 (570)
Q Consensus 436 ~~----~~~~~~~~~~~~~~~~ia~~av~~a~~~~------a-~Iiv~T~sG~tA~~ls~-----~RP~~p-Iiavt~~ 497 (570)
.. -|.+. ......-..-.+.++.++++ . .||+.+-+|.++-.++. ++|..| |++|-|.
T Consensus 189 ~~~~~~~~~~~----~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~ 263 (396)
T TIGR03528 189 QDTAWEGYEKI----PTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPD 263 (396)
T ss_pred ccccccccccC----chHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 11 01110 01111122233456666664 3 68887777775544443 367664 8999885
No 366
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=46.16 E-value=95 Score=31.60 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.|.+.|.++.|.+.-+..+ -+|++++++..|.|+.+-. -+.....+-+.|+++++|++.+
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 445667777788877766444332 2578888888998887621 2246678889999999999875
No 367
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=46.13 E-value=2.4e+02 Score=29.63 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE-ccc--hhhhhcCC
Q 008319 307 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNM--LESMIDHP 382 (570)
Q Consensus 307 ~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva-Tqm--LeSM~~~~ 382 (570)
..++|...+....-++.+.+-++. .+.||+.- -.+|+++=...-+++++.|++.|.+|=.= ..+ -|.-....
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~----S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDG----SHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 478899999998766665555555 77999963 34677777788899999999999887210 000 00000000
Q ss_pred CcChHHHhHHHHHHHh-CccEEEecccccCCCCHH----HHHHHHHHHHHHh
Q 008319 383 TPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL----KAVKVMHTVALRT 429 (570)
Q Consensus 383 ~PtrAEv~Dv~nav~~-G~D~vmLs~ETA~G~yP~----eaV~~m~~I~~~a 429 (570)
.-...+..+...++.. |+|++-.|--|+.|.||- -=.+.+.+|...+
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 0001124456677764 999999999999999964 4455666666655
No 368
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=45.65 E-value=1.9e+02 Score=30.41 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=78.0
Q ss_pred HHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE-ccch---
Q 008319 301 YLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNML--- 375 (570)
Q Consensus 301 ~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva-TqmL--- 375 (570)
+.++.+..+++.........++.+.+=++. .+-||+. |-.+|+++=...-+++++.|+..|.+|=-= .++-
T Consensus 70 ~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e 145 (288)
T TIGR00167 70 MSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMID----GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEE 145 (288)
T ss_pred HHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEec----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcc
Confidence 333333478899999998866555554444 6799996 335688777788899999999999987210 0000
Q ss_pred hhh--hc-CCCcChHHHhHHHHHHH-hCccEEEecccccCCCCH---H-HHHHHHHHHHHHh
Q 008319 376 ESM--ID-HPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP---L-KAVKVMHTVALRT 429 (570)
Q Consensus 376 eSM--~~-~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP---~-eaV~~m~~I~~~a 429 (570)
+.. .. ...-| +..+...++. -|+|++-.+--|+.|.|+ . --...+.+|....
T Consensus 146 ~~~~~~~~~~~~T--~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 146 DGVSVADESALYT--DPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred CCcccccccccCC--CHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 000 00 00011 1235566776 499999999999999994 3 3445566665444
No 369
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=45.62 E-value=1.1e+02 Score=29.48 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~-gKPviva 371 (570)
...+++.+++.+.++.+.+--+..+. +|++++++-.|.|+.+-.+ +.....+...|.+. ++|++.+
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEE
Confidence 45567778888888777664444433 6788888888888876222 24556677777776 9999986
No 370
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=45.37 E-value=30 Score=29.78 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=33.0
Q ss_pred CCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEec
Q 008319 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (570)
Q Consensus 206 ~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~ 248 (570)
.++.+.+++||+|..-.|-+ -+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~-G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGII-GTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCeE-EEEEEEeCCEEEEEECCCeEEE
Confidence 46778999999999988755 5677899998888876666655
No 371
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=45.18 E-value=1.5e+02 Score=30.27 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=78.4
Q ss_pred HHHHHh-CCEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHH-HHHHHhCc
Q 008319 325 HSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI-AIAVREGA 400 (570)
Q Consensus 325 deIl~~-sDgImIgrGDLg--~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv-~nav~~G~ 400 (570)
+..++. +||+++. |--| ..+..++-..+.+.+++.++ -..|+++- ...++-.|..+. ..+-..|+
T Consensus 25 ~~l~~~Gv~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~g---------v~~~~~~~~i~~a~~a~~~Ga 93 (281)
T cd00408 25 EFLIEAGVDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAG---------VGANSTREAIELARHAEEAGA 93 (281)
T ss_pred HHHHHcCCCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEe---------cCCccHHHHHHHHHHHHHcCC
Confidence 333443 8999874 2211 11222333333333333332 24677753 334455564444 45566699
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCCh-hHHHHHHHHHHHhhcCCcEEE--EcC--C
Q 008319 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHM-GDMFAFHSTTMANTLNTPIIV--FTR--T 475 (570)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~-~~~ia~~av~~a~~~~a~Iiv--~T~--s 475 (570)
|++|+..-.-...-+-+.++....|+....--+. +|+.-. ....++ .+.+ .+++. .+ .|+- .|. -
T Consensus 94 d~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~---iYn~P~-~tg~~l~~~~~----~~L~~-~~-~v~giK~s~~d~ 163 (281)
T cd00408 94 DGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVI---LYNIPG-RTGVDLSPETI----ARLAE-HP-NIVGIKDSSGDL 163 (281)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE---EEECcc-ccCCCCCHHHH----HHHhc-CC-CEEEEEeCCCCH
Confidence 9999975443334467899999999887543211 010000 000111 2322 23443 23 2222 332 3
Q ss_pred hHHHHHHHhcCCCCeEEEEeCCHHHHHHhc
Q 008319 476 GSMAVILSHYRPSSTIFAFTNQERIKQRLV 505 (570)
Q Consensus 476 G~tA~~ls~~RP~~pIiavt~~~~taRrL~ 505 (570)
....+.+...+|...|+.-. +......+.
T Consensus 164 ~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~ 192 (281)
T cd00408 164 DRLTRLIALLGPDFAVLSGD-DDLLLPALA 192 (281)
T ss_pred HHHHHHHHhcCCCeEEEEcc-hHHHHHHHH
Confidence 44555666666777777655 555555443
No 372
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=44.98 E-value=1.1e+02 Score=30.48 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 008319 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 371 (570)
Q Consensus 297 ~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~-gKPviva 371 (570)
.+++.+.+.|..+.+-+.-|.... +|++++++-.|.|+-+- +.. .....+...|.+. ++|++.+
T Consensus 85 ~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~---------D~~-~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 85 ALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAF---------DNA-ETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECC---------CCH-HHHHHHHHHHHHhCCCCEEEe
Confidence 456677777888777666555544 57888888888887752 222 3455788899998 9999986
No 373
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.88 E-value=1.1e+02 Score=33.25 Aligned_cols=60 Identities=20% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccC
Q 008319 109 PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (570)
Q Consensus 109 Ps~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~ 175 (570)
-|+.+.|.+.+-- .|-.-|=|=+. +.+- .-+.|+++++ .+.+-+.+-+|++-+--|.-+.
T Consensus 102 ~ss~siEeva~a~-~~~~wfQLY~~--~r~~---~~~ll~RA~~-aG~~alvlTvD~pv~g~R~~d~ 161 (361)
T cd04736 102 ASNMSIEDVARQA-DGDLWFQLYVV--HREL---AELLVKRALA-AGYTTLVLTTDVAVNGYRERDL 161 (361)
T ss_pred CCCCCHHHHHhhc-CCCeEEEEEec--CHHH---HHHHHHHHHH-cCCCEEEEecCCCCCCCchhhh
Confidence 4566777765432 24445555552 3443 3345555543 3546788999998876665444
No 374
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=44.82 E-value=1.1e+02 Score=25.75 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=43.0
Q ss_pred ceEEEecCCCCCCHHHHHHH-HHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeec
Q 008319 101 TKIVCTIGPSTSSREMIWKL-AEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (570)
Q Consensus 101 tKIi~TiGPs~~~~e~l~~l-i~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl 165 (570)
-++.+=+.+ +.+-|.+..+ -..|+.+.|-.-++|.....+++++.+++ + +.++|-.|-
T Consensus 10 ~~~~~lvS~-s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G-~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSR-SRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----G-YSIAITPDG 68 (74)
T ss_pred CCEEEEEcc-CcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----C-CeEEEeCCC
Confidence 344444444 5677777774 56799999999999998888888887773 3 788998883
No 375
>PRK10717 cysteine synthase A; Provisional
Probab=44.77 E-value=4e+02 Score=28.07 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. . |..+.-..+...-..|++.+...+. . ...|-..++...+++.+.+.....
T Consensus 78 alA~~a~~~G~~~~vv---------~--p~~~~~~k~~~~~~~GA~V~~~~~~-~-~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIV---------M--PETQSQEKKDLLRALGAELVLVPAA-P-YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEE---------e--CCCCCHHHHHHHHHcCCEEEEeCCc-c-cccccchHHHHHHHHHHHHhhCCC
Confidence 4556889999999874 1 2222223456677889998877531 1 011112344444445444221111
Q ss_pred CCCCCCcccCCCCChhHH---HHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDM---FAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~---ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~ 499 (570)
..++.+. +. ++... ...-+.++.++++ . .||+..-+|.++.-++ .++|.+.|+++-+...
T Consensus 145 ~~~~~~~---~~-~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~ 214 (330)
T PRK10717 145 GAIWANQ---FD-NPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGS 214 (330)
T ss_pred CeEecCC---CC-ChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 1111110 11 11111 1233566777775 4 7888888888776555 4579999999998643
No 376
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=44.71 E-value=3.3e+02 Score=27.89 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHHH-HHhCccEEEecccc
Q 008319 350 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGET 409 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ET 409 (570)
-+....++++..++. ++|+++ .-.+..+..|..+++.+ ...|+|++.+++=+
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~v--------Kl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLV--------KLSPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEE--------EeCCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 355666777777765 899886 23444555566666654 45699999997543
No 377
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=44.45 E-value=2.4e+02 Score=29.77 Aligned_cols=121 Identities=13% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE----E
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV----I 369 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPv----i 369 (570)
+..++.+.++. .++|.........++.+..-++. .+.||+. +-.+|+++=...-+++++.|+..|..| +
T Consensus 63 ~~~~~~~A~~~--~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG 136 (284)
T PRK09195 63 LAIVSAAAKQY--HHPLALHLDHHEKFDDIAQKVRSGVRSVMID----GSHLPFAQNISLVKEVVDFCHRFDVSVEAELG 136 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCEEEeC----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Q ss_pred EEccchhhhhcCCCcC---------hHHHhHHHHHHHh-CccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 370 VATNMLESMIDHPTPT---------RAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 370 vaTqmLeSM~~~~~Pt---------rAEv~Dv~nav~~-G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
. +....-. .....+...++.. |+|++-.+--|+.|.| |---...+.+|....
T Consensus 137 ~--------vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK09195 137 R--------LGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV 201 (284)
T ss_pred c--------ccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 378
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=44.26 E-value=3.2e+02 Score=27.23 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=70.4
Q ss_pred hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCC----
Q 008319 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL---- 345 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~ei---- 345 (570)
..+.+.|+|+|=++. +.-.+..++..+ +.+..|=+ +..|++|+.++ +|.+++||- +....
T Consensus 73 ~lA~~~~adGVHlg~--~d~~~~~~r~~~---~~~~~iG~------S~H~~~e~~~A~~~gaDYi~lgpv-f~T~tK~~~ 140 (211)
T PRK03512 73 RLAIKHQAYGVHLGQ--EDLETADLNAIR---AAGLRLGV------STHDDMEIDVALAARPSYIALGHV-FPTQTKQMP 140 (211)
T ss_pred HHHHHcCCCEEEcCh--HhCCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCc-cCCCCCCCC
Confidence 445667888876662 111123444433 33333333 33455555543 799999974 22111
Q ss_pred -CCCCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHH
Q 008319 346 -PIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 423 (570)
Q Consensus 346 -g~~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~ 423 (570)
+...+..++ +.++. ...||+.- -.-. ..++......|++++-+.++-..-.-|.++++.+.
T Consensus 141 ~~~~G~~~l~----~~~~~~~~~PV~Ai--------GGI~-----~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~ 203 (211)
T PRK03512 141 SAPQGLAQLA----RHVERLADYPTVAI--------GGIS-----LERAPAVLATGVGSIAVVSAITQAADWRAATAQLL 203 (211)
T ss_pred CCCCCHHHHH----HHHHhcCCCCEEEE--------CCCC-----HHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHH
Confidence 111122222 22333 36898852 2222 23466677889999999988887788999999777
Q ss_pred HHHH
Q 008319 424 TVAL 427 (570)
Q Consensus 424 ~I~~ 427 (570)
++..
T Consensus 204 ~~~~ 207 (211)
T PRK03512 204 ELAE 207 (211)
T ss_pred HHHh
Confidence 7643
No 379
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=44.13 E-value=3.1e+02 Score=26.65 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=60.9
Q ss_pred hhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCC---Cc---ccCCCC
Q 008319 274 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG---DL---GAELPI 347 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrG---DL---g~eig~ 347 (570)
+.+...++|+|-+..-.+.+.+..+++.+ +.++.....+-+..-.+.+...-..+|++++.-. +. |...++
T Consensus 67 ~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~ 143 (203)
T cd00405 67 EIAEELGLDVVQLHGDESPEYCAQLRARL---GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDW 143 (203)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceECh
Confidence 44567899999888766677777777655 3332211445443332222222234799988532 11 222232
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhC-ccEEEecc--cccCC
Q 008319 348 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSG--ETAHG 412 (570)
Q Consensus 348 ~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs~--ETA~G 412 (570)
+.+. ++ . ..+|++.|.- -.|. .+..++..| +|++-+++ |++-|
T Consensus 144 ~~l~----~~----~-~~~PvilaGG--------I~~~-----Nv~~~i~~~~~~gvdv~S~ie~~pg 189 (203)
T cd00405 144 SLLR----GL----A-SRKPVILAGG--------LTPD-----NVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred HHhh----cc----c-cCCCEEEECC--------CChH-----HHHHHHHhcCCCEEEcCCcccCCCC
Confidence 2221 11 1 5689998632 2232 355666666 77776654 44446
No 380
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=44.03 E-value=4.7e+02 Score=28.65 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=72.9
Q ss_pred hhhhcCCcEEEec---CCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--CCEEEEcCCCccc------
Q 008319 275 FGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA------ 343 (570)
Q Consensus 275 ~~~~~gvd~I~~S---fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDgImIgrGDLg~------ 343 (570)
..+..|.|.+..+ ...+++++.++-+.+++.....+|+.|+=.....+.+...++. +|+|.|.=++=+.
T Consensus 178 r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~ 257 (392)
T cd02808 178 RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLT 257 (392)
T ss_pred hCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc
Confidence 3456677776543 3467777776666777665557888988543234455555544 7999997554322
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHc----CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 344 ---ELPIEDVPLLQEDIIRRCRSM----QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 344 ---eig~~~v~~~qk~Ii~~c~~~----gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
+.+++ .......+....++. ..|++.+.- . ..-.|++.++..|+|++.+.
T Consensus 258 ~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGG---------I---~~g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 258 FIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGG---------L---RTGADVAKALALGADAVGIG 314 (392)
T ss_pred ccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECC---------C---CCHHHHHHHHHcCCCeeeec
Confidence 12332 223445555555544 467776432 2 12458999999999999874
No 381
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.01 E-value=47 Score=34.52 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=45.6
Q ss_pred ChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcch--hhhHHHHHHh-CCEEEEcC
Q 008319 266 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 266 t~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g--v~NldeIl~~-sDgImIgr 338 (570)
+-++.+++..+.+.|+|+|++..+ ++++++++.+.+. .++++.| --| .+|+.++++. +|+|-++.
T Consensus 188 ev~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 188 EVETLEQLKEALEAGADIIMLDNM-SPEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred EECCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 334567778888999999999977 4666666655542 2444443 223 4799999988 99999874
No 382
>PLN02741 riboflavin synthase
Probab=43.76 E-value=71 Score=31.75 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=43.3
Q ss_pred EEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEe-------CcEeccCcccccC
Q 008319 200 TVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVD-------GGELKSRRHLNVR 256 (570)
Q Consensus 200 ~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~-------gG~l~s~KgIn~p 256 (570)
.+.+..+.+++.+++||.|-+|. +.|+|.+++++.+.+-+.. =|.++...-||+.
T Consensus 24 ~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNLE 85 (194)
T PLN02741 24 DLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNLE 85 (194)
T ss_pred EEEEEcchhhcccccCCEEEECc--EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEeec
Confidence 45555556778999999999997 8999999999988887753 3666777778875
No 383
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=43.74 E-value=2.7e+02 Score=29.39 Aligned_cols=121 Identities=16% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE----E
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV----I 369 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPv----i 369 (570)
+..++.+.++. .++|...+.....++.+.+-++. .+.||+. +-.+|+++=...-+++++.|+..|.+| +
T Consensus 63 ~~~~~~~a~~~--~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG 136 (286)
T PRK12738 63 YALCSAYSTTY--NMPLALHLDHHESLDDIRRKVHAGVRSAMID----GSHFPFAENVKLVKSVVDFCHSQDCSVEAELG 136 (286)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCeEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Q ss_pred EEccchhhhhcCCCcC---------hHHHhHHHHHHHh-CccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 370 VATNMLESMIDHPTPT---------RAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 370 vaTqmLeSM~~~~~Pt---------rAEv~Dv~nav~~-G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
- +....-. ..+..+...++.. |+|++-.+--|+.|.| |---...+.+|....
T Consensus 137 ~--------igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~ 201 (286)
T PRK12738 137 R--------LGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV 201 (286)
T ss_pred e--------eCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh
No 384
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.68 E-value=4.3e+02 Score=28.08 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=17.0
Q ss_pred CCChhhHHHh--------hhhhhcCCcEEEe
Q 008319 264 SITDKDWEDI--------KFGVDNQVDFYAV 286 (570)
Q Consensus 264 ~lt~kD~~dI--------~~~~~~gvd~I~~ 286 (570)
.+|..|++.+ +.+.+.|+|+|-+
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVei 168 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQI 168 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5788887665 3556799999965
No 385
>PRK08417 dihydroorotase; Provisional
Probab=43.67 E-value=4.5e+02 Score=28.37 Aligned_cols=103 Identities=8% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCCCChhhHHHh-hhhhhcCCcEEEe-----cCCCChhHHHHHHHHHHhc-CCCceEEEeecCcchhhhHHHHHHh-CCE
Q 008319 262 LPSITDKDWEDI-KFGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIISA-SDG 333 (570)
Q Consensus 262 lp~lt~kD~~dI-~~~~~~gvd~I~~-----SfV~sa~dv~~vr~~l~~~-~~~i~IiaKIEt~~gv~NldeIl~~-sDg 333 (570)
-|..+.+|.+.. +.|+..|+-.|.. |.+.+++.+....+..+.. +.-+..+.-....+.+..+++..+. +++
T Consensus 41 ~~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~ 120 (386)
T PRK08417 41 NDSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAKA 120 (386)
T ss_pred CCCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCEE
Confidence 344444444333 4566788887654 2344445555544444321 1112222222344445666665543 566
Q ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 008319 334 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (570)
Q Consensus 334 ImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTq 373 (570)
+.+. + + .-.....++++.+++.|+|+.+-.+
T Consensus 121 ~k~~-~------~--~~~~~l~~~~~~a~~~g~~V~~HaE 151 (386)
T PRK08417 121 LELS-S------D--LDANLLKVIAQYAKMLDVPIFCRCE 151 (386)
T ss_pred EECC-C------C--CCHHHHHHHHHHHHHcCCEEEEeCC
Confidence 6542 1 1 1234567788889999999987654
No 386
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=43.25 E-value=1.1e+02 Score=31.00 Aligned_cols=96 Identities=26% Similarity=0.237 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHhcCCCceEEEeecC---cchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH
Q 008319 288 FVKDAKVVHELKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS 363 (570)
Q Consensus 288 fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt---~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~ 363 (570)
..++++.+.++-+.+.+. +++|.+||=. .+.++-...+.+. +|+|-+--+.-+ +..++ +.++..+
T Consensus 121 Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~- 189 (233)
T cd02911 121 LLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS- 189 (233)
T ss_pred HcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-
Confidence 334566666655555543 6889999932 1222222222222 787766322222 11122 2333333
Q ss_pred cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 364 MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 364 ~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
.++|+|- .+..-+. .|...++..|+|+||+.
T Consensus 190 ~~ipVIg---------nGgI~s~---eda~~~l~~GaD~VmiG 220 (233)
T cd02911 190 TELFIIG---------NNSVTTI---ESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCCEEEE---------ECCcCCH---HHHHHHHHcCCCEEEEc
Confidence 5789874 4444443 45667778899999995
No 387
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=42.68 E-value=63 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=25.7
Q ss_pred cccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeC
Q 008319 212 VEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDG 244 (570)
Q Consensus 212 v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~g 244 (570)
-++|..|.|+| .|..+|.++.++.+..-+.-.
T Consensus 6 Rk~gE~I~Ig~-~I~I~Vl~i~~~~VklgI~AP 37 (54)
T PF02599_consen 6 RKVGESIVIGD-DIEITVLEISGGQVKLGIDAP 37 (54)
T ss_dssp EETT-EEEETT-TEEEEEEEEETTEEEEEEEEC
T ss_pred ccCCCEEEECC-CEEEEEEEEcCCEEEEEEECC
Confidence 37899999987 999999999999887765543
No 388
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=42.61 E-value=2.5e+02 Score=31.59 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=55.8
Q ss_pred hhhHHHHHHh----CCEEEEcCCCcccCCCCC--CHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH
Q 008319 321 IPNLHSIISA----SDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI 394 (570)
Q Consensus 321 v~NldeIl~~----sDgImIgrGDLg~eig~~--~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n 394 (570)
..+++|+..+ +|.|.+||-.=+..=+.. .=....+++ +.....||+.. -... .. ++..
T Consensus 397 ~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~---~~~~~~Pv~ai--------GGI~--~~---~~~~ 460 (502)
T PLN02898 397 CKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREV---CEASKLPVVAI--------GGIS--AS---NAAS 460 (502)
T ss_pred CCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHH---HHcCCCCEEEE--------CCCC--HH---HHHH
Confidence 4566776655 799998874222111110 001222222 44567898752 2222 22 2445
Q ss_pred HHHhCcc---EEEecccccCCCCHHHHHHHHHHHHHHhh
Q 008319 395 AVREGAD---AVMLSGETAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 395 av~~G~D---~vmLs~ETA~G~yP~eaV~~m~~I~~~aE 430 (570)
+...|+| ++.+.+.-..-..|.++++.+.++..+..
T Consensus 461 ~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~ 499 (502)
T PLN02898 461 VMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEAL 499 (502)
T ss_pred HHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHh
Confidence 5666777 99988887666789999999988876654
No 389
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=42.61 E-value=45 Score=31.27 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=32.0
Q ss_pred EEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 333 gImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
.+++|--|+....+.+++....+++++.+++.|.++++.
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 466677788766677788888899999999999998875
No 390
>PRK13938 phosphoheptose isomerase; Provisional
Probab=42.30 E-value=3.5e+02 Score=26.72 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhhcCC--cEEEEcC--ChHHHHHHHh--------cCCCCeEEEEeCCHHHH--------------HHh
Q 008319 451 GDMFAFHSTTMANTLNT--PIIVFTR--TGSMAVILSH--------YRPSSTIFAFTNQERIK--------------QRL 504 (570)
Q Consensus 451 ~~~ia~~av~~a~~~~a--~Iiv~T~--sG~tA~~ls~--------~RP~~pIiavt~~~~ta--------------RrL 504 (570)
.+.+...+-.+.+.+.. .|+++-. ||..|+.++. .||+.|+++++.+.... +++
T Consensus 28 ~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~ 107 (196)
T PRK13938 28 LEAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARAL 107 (196)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHH
Confidence 34444444444444433 6777665 8888888872 57899999999886543 333
Q ss_pred --ccccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecC
Q 008319 505 --VLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSG 550 (570)
Q Consensus 505 --~L~rGV~Pil~~~~~d~d~~i~~al~~lke~Gllk~GD~VVvv~G~ 550 (570)
.+..|=.-+.+..+.+..+ +-.+++.++++|. ++|.+++.
T Consensus 108 ~~~~~~~DllI~iS~SG~t~~-vi~a~~~Ak~~G~-----~vI~iT~~ 149 (196)
T PRK13938 108 EGSARPGDTLFAISTSGNSMS-VLRAAKTARELGV-----TVVAMTGE 149 (196)
T ss_pred HhcCCCCCEEEEEcCCCCCHH-HHHHHHHHHHCCC-----EEEEEeCC
Confidence 3334434444444444444 4457778888664 56666663
No 391
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=42.29 E-value=62 Score=32.34 Aligned_cols=56 Identities=27% Similarity=0.454 Sum_probs=44.2
Q ss_pred cEEEeccC-CcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEE-------eCcEeccCcccccC
Q 008319 199 DTVSVNYD-DFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVV-------DGGELKSRRHLNVR 256 (570)
Q Consensus 199 ~~i~v~~~-~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~-------~gG~l~s~KgIn~p 256 (570)
..+.+..+ .+++.+++||.|-+|. +.|+|.+++++.+.+-+. +=|.++...-||+.
T Consensus 22 ~~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 22 ISLVVNLADHMLDDLELGDSIAVNG--VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEEeChHHhcccccCCEEEECc--EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 34666665 6778999999999997 899999999998887765 33667777778875
No 392
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.14 E-value=33 Score=30.75 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=23.4
Q ss_pred eccCCcccccccCCEEEEeCCeeEEEEEEE
Q 008319 203 VNYDDFVNDVEVGDILLVDGGMMSLAVKSK 232 (570)
Q Consensus 203 v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~ 232 (570)
++++. ...+++||+|.+..+++..+|+++
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~v 54 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDV 54 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEE
Confidence 44443 368999999999999999998875
No 393
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=42.10 E-value=2.4e+02 Score=29.44 Aligned_cols=47 Identities=38% Similarity=0.502 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecc
Q 008319 351 PLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (570)
Q Consensus 351 ~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (570)
+..-.+|++..++. ++|+.+= -.|...++.+++. +...|+|++.+++
T Consensus 153 ~~~~~~iv~~v~~~~~~Pv~vK----------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 153 PELVEEICRWVREAVKIPVIAK----------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred HHHHHHHHHHHHHhcCCCeEEE----------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 56667788887754 7899862 2344445656665 5677999999864
No 394
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=42.07 E-value=43 Score=37.05 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=41.6
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHH
Q 008319 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (570)
Q Consensus 105 ~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~ 150 (570)
+.||-.-++.+.+.-|.++|+|+.=|+-|.|+-.+..++|+.+|+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 4567777888889999999999999999999999999999999974
No 395
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=41.87 E-value=58 Score=36.63 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=40.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
+.++-+-+|+.-.+.+..+.|+++|++++-++-+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566667765567999999999999999999999998877777776664
No 396
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=41.76 E-value=2.1e+02 Score=31.44 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=38.1
Q ss_pred CceEEEecC-CCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeeeeccC
Q 008319 100 KTKIVCTIG-PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (570)
Q Consensus 100 ~tKIi~TiG-Ps~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR~G~~ 175 (570)
+..|.-+++ -++.+.|.+.+--..|.--|-| .-+.+.+. ..+.|+++++ .+.+.+.+-+|++-+--|-.++
T Consensus 113 ~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQl-Y~~~dr~~---~~~ll~RA~~-aG~~alvlTVD~pv~g~Rerd~ 184 (383)
T cd03332 113 ELGVPYILSTASSSSIEDVAAAAGDAPRWFQL-YWPKDDDL---TESLLRRAEK-AGYRVLVVTLDTWSLGWRPRDL 184 (383)
T ss_pred HcCCCeeecCCCCCCHHHHHhhcCCCCcEEEe-eCCCCHHH---HHHHHHHHHH-cCCCEEEEeCCCCCCCCchhhh
Confidence 455555554 5667777775431123333333 22334443 4455556544 3546688888888776664443
No 397
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=41.72 E-value=70 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=36.7
Q ss_pred hhhhhhcCCcEEEecCCCC--hhHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh-CCEEEEcCC
Q 008319 273 IKFGVDNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~s--a~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDgImIgrG 339 (570)
.+...+.|+|+|-++--.. ..|+..+++.- .+++||+ -|.|.+ ...+.+.. +|++|||||
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~e---da~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIE---SAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHH---HHHHHHHcCCCEEEEcCC
Confidence 3556688999886653222 33555555542 3577777 454443 33444445 999999999
No 398
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=41.65 E-value=75 Score=33.21 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=43.2
Q ss_pred HHhhhhhhcCCcEEEecCCC------ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~------sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGD 340 (570)
++.+.+.+.|+|+|.++--. ....+..+.+..+....++.||+- -|+.+-.++++. +|++++||.-
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 44667778999999886321 112333444433333446778772 577777887776 8999999854
Q ss_pred c
Q 008319 341 L 341 (570)
Q Consensus 341 L 341 (570)
|
T Consensus 260 l 260 (299)
T cd02809 260 L 260 (299)
T ss_pred H
Confidence 4
No 399
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=41.58 E-value=3.4e+02 Score=29.57 Aligned_cols=75 Identities=7% Similarity=0.097 Sum_probs=50.1
Q ss_pred CChhhHHH-hhhhhhcCCcEEE-------ecCCCChhHHHHHHHHHHhcC----CCceEEEee--cCcchhhhHHHHHHh
Q 008319 265 ITDKDWED-IKFGVDNQVDFYA-------VSFVKDAKVVHELKDYLKSCN----ADIHVIVKI--ESADSIPNLHSIISA 330 (570)
Q Consensus 265 lt~kD~~d-I~~~~~~gvd~I~-------~SfV~sa~dv~~vr~~l~~~~----~~i~IiaKI--Et~~gv~NldeIl~~ 330 (570)
|+.+.... +.+.++.|+|+|. .+|..-.+.+..+++.++..+ ....+++-| ++.+.+++.+...+.
T Consensus 143 ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~ 222 (367)
T cd08205 143 LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEA 222 (367)
T ss_pred CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHc
Confidence 44444433 3455678999983 246666677777776665554 667777777 446677777777776
Q ss_pred -CCEEEEcCC
Q 008319 331 -SDGAMVARG 339 (570)
Q Consensus 331 -sDgImIgrG 339 (570)
+|++|+.+.
T Consensus 223 Gad~vmv~~~ 232 (367)
T cd08205 223 GANALLINPN 232 (367)
T ss_pred CCCEEEEecc
Confidence 899999754
No 400
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.49 E-value=1.6e+02 Score=29.53 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=53.1
Q ss_pred cEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHH
Q 008319 282 DFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRC 361 (570)
Q Consensus 282 d~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c 361 (570)
..+..||- .+.++.+++. ..++.+....+... ..++.+.+.....-+++ +....+..++++.+
T Consensus 165 ~v~~~Sf~--~~~l~~~~~~----~p~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~~ 227 (263)
T cd08567 165 RVVLQSFD--WRTLQEVRRL----APDIPTVALTEETT-LGNLPRAAKKLGADIWS----------PYFTLVTKELVDEA 227 (263)
T ss_pred ceEEEeCC--HHHHHHHHHH----CCCccEEEEecCCc-ccCHHHHHHHhCCcEEe----------cchhhcCHHHHHHH
Confidence 55667764 4455555443 34455554443321 02333333332221222 12334567899999
Q ss_pred HHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 362 RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 362 ~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
+++|+++++-|- . +..+...++..|+|+|+-
T Consensus 228 ~~~G~~v~vwtv--------n-----~~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 228 HALGLKVVPWTV--------N-----DPEDMARLIDLGVDGIIT 258 (263)
T ss_pred HHCCCEEEEecC--------C-----CHHHHHHHHHcCCCEEEc
Confidence 999999998762 1 123466788999999875
No 401
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=41.38 E-value=2.9e+02 Score=29.56 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=47.7
Q ss_pred CceEEEeecCcchhhhHHHHHHh-----CCEEEEcC----CC-c-----ccCC-CC---CCHHHHHHHHHHHHHHc--CC
Q 008319 308 DIHVIVKIESADSIPNLHSIISA-----SDGAMVAR----GD-L-----GAEL-PI---EDVPLLQEDIIRRCRSM--QK 366 (570)
Q Consensus 308 ~i~IiaKIEt~~gv~NldeIl~~-----sDgImIgr----GD-L-----g~ei-g~---~~v~~~qk~Ii~~c~~~--gK 366 (570)
++++++|+=---.-+++.++++. +|||.+.= .+ + +... |+ +--+.+.+.+-...+.. ..
T Consensus 210 ~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 289 (335)
T TIGR01036 210 RVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRL 289 (335)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 38999999432222356666653 78887531 00 0 1011 11 12333444444444433 36
Q ss_pred CEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecc
Q 008319 367 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 407 (570)
Q Consensus 367 PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 407 (570)
|+|-+.. .- ...|+..++..|+|+|.+..
T Consensus 290 piig~GG---------I~---~~~da~e~l~aGA~~Vqv~t 318 (335)
T TIGR01036 290 PIIGVGG---------IS---SAQDALEKIRAGASLLQIYS 318 (335)
T ss_pred CEEEECC---------CC---CHHHHHHHHHcCCcHHHhhH
Confidence 7775433 22 24578899999999998853
No 402
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.36 E-value=71 Score=32.45 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccc
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 374 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqm 374 (570)
..+++.+.+.|.++.+.+.-+... -+|+++++.. .|.|+.+-. . ......+.+.|++.++|+|.+
T Consensus 68 e~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD---------~-~~~k~~L~~~c~~~~ip~I~s--- 133 (231)
T cd00755 68 EVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAID---------S-IRAKVALIAYCRKRKIPVISS--- 133 (231)
T ss_pred HHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCC---------C-HHHHHHHHHHHHHhCCCEEEE---
Confidence 446777877788776655433322 2578888753 787777521 2 245567899999999999975
Q ss_pred hhhhhcCCCcChHHHhHHH
Q 008319 375 LESMIDHPTPTRAEVSDIA 393 (570)
Q Consensus 375 LeSM~~~~~PtrAEv~Dv~ 393 (570)
-+......||+-++.|++
T Consensus 134 -~g~g~~~dp~~i~i~di~ 151 (231)
T cd00755 134 -MGAGGKLDPTRIRVADIS 151 (231)
T ss_pred -eCCcCCCCCCeEEEccEe
Confidence 122234578887777763
No 403
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.02 E-value=3.2e+02 Score=26.92 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=62.1
Q ss_pred hhHHHhhhhhhcCCcEEEecCC--CChhHHHHHHHHHHhcCCCceEEEeecCc------ch-----hhhHHHHHHh----
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVKIESA------DS-----IPNLHSIISA---- 330 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV--~sa~dv~~vr~~l~~~~~~i~IiaKIEt~------~g-----v~NldeIl~~---- 330 (570)
.+.+|++...+.|+|.|.+..- .+++.+.++ .+....++. .-|+-+ .+ -.+..|+++.
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei---~~~~~~~i~--vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~ 158 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEA---CKKFPGKIV--VGLDARDGKVATDGWLETSGVTAEDLAKRFEDA 158 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHH---HHHhCCCce--eeeeccCCEEEEccCeecCCCCHHHHHHHHHhc
Confidence 4667777778889998877632 444444443 333333322 122211 01 1123333332
Q ss_pred -CCEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhC-ccEEEecc
Q 008319 331 -SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSG 407 (570)
Q Consensus 331 -sDgImIg-rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs~ 407 (570)
+|.+++- +.-=+..-| .++ ...++ .++....|+|.+ ...-+. .|+..+...| +|++|+..
T Consensus 159 g~~~ii~~~~~~~g~~~G-~d~-~~i~~---l~~~~~ipvia~---------GGi~~~---~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSG-PNV-EATRE---LAAAVPIPVIAS---------GGVSSL---DDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred CCCEEEEeeecCcCCcCC-CCH-HHHHH---HHHhCCCCEEEe---------CCCCCH---HHHHHHHHcCCccEEEEEH
Confidence 6766553 221122223 222 22223 344557999864 334444 4566667777 99999864
Q ss_pred cccCCCCH
Q 008319 408 ETAHGKFP 415 (570)
Q Consensus 408 ETA~G~yP 415 (570)
-=-.|+++
T Consensus 222 a~~~~~~~ 229 (233)
T PRK00748 222 ALYEGKFD 229 (233)
T ss_pred HHHcCCcC
Confidence 33344444
No 404
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=41.00 E-value=1.7e+02 Score=30.25 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=54.5
Q ss_pred HHHHHh-CCEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH-HhHHHHHHHhCc
Q 008319 325 HSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGA 400 (570)
Q Consensus 325 deIl~~-sDgImIgrGDLg--~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~ 400 (570)
+-+++. +||+++. |--| ..+..++-..+.+.+++.+ +-..|+++. ....+..| +...-.+-..|+
T Consensus 29 ~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~g---------v~~~~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 29 DYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAG---------TGSNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred HHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEee---------cCCchHHHHHHHHHHHHHcCC
Confidence 444444 8999974 2221 1223233333333344433 223677753 22223345 444455666799
Q ss_pred cEEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 008319 401 DAVMLSGETAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 401 D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
|++|+..=.-....+-+.+++...|+..++-
T Consensus 98 d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 98 DGALVVTPYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999976554444578899999999987753
No 405
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=40.92 E-value=3.2e+02 Score=29.44 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=73.3
Q ss_pred HHhhhhhhc-CCcEEEecCCC-ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCC-
Q 008319 271 EDIKFGVDN-QVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP- 346 (570)
Q Consensus 271 ~dI~~~~~~-gvd~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig- 346 (570)
+.....++. |+-.+..+|-. ..+++..++. ..++++.++=|+. ....-.+. .|+++....|=|-+.|
T Consensus 94 ~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~---~A~~~~~~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 94 AGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVR---EALKAERAGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred HhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHH---HHHHHHhCCCCEEEecCCcCCCcCCC
Confidence 444455555 99999999994 6777766665 2456777765542 22222233 8999998887777776
Q ss_pred ---CCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 347 ---IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 347 ---~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
-..+..+..+|.+.++. .|||.|--+- .-.++..|+..|+|++-+
T Consensus 165 ~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~------------dg~~i~AAlalGA~gVq~ 212 (336)
T COG2070 165 VDLEVSTFALVPEVVDAVDG--IPVIAAGGIA------------DGRGIAAALALGADGVQM 212 (336)
T ss_pred CCCCccHHHHHHHHHHHhcC--CCEEEecCcc------------ChHHHHHHHHhccHHHHh
Confidence 33456666777766655 8999874432 234677788888887643
No 406
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=40.91 E-value=76 Score=31.95 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=43.0
Q ss_pred hhhhhhcCCcEEEecCCCChhH--------HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEc
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKV--------VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 337 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~d--------v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIg 337 (570)
...|.+.|+++| .|||.+-+| +.++.++++..+.+.+|++ .+++|.+++++. +|.+-++
T Consensus 115 a~~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 115 ALLAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHHHHcCCCEEEcC
Confidence 344667899986 678888766 4566777777778888887 688888888864 6666654
No 407
>PTZ00344 pyridoxal kinase; Provisional
Probab=40.78 E-value=1.9e+02 Score=29.99 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCCCChhhHHHhhhhh-----hcCCcEEEecCCCChhHHHHHHHHHHh---cCCCceEEEe---------ecCcchhhh
Q 008319 261 NLPSITDKDWEDIKFGV-----DNQVDFYAVSFVKDAKVVHELKDYLKS---CNADIHVIVK---------IESADSIPN 323 (570)
Q Consensus 261 ~lp~lt~kD~~dI~~~~-----~~gvd~I~~SfV~sa~dv~~vr~~l~~---~~~~i~IiaK---------IEt~~gv~N 323 (570)
.-|.+++.+.+++...+ ...++.|...|+.+++.+..+.++++. .+.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 34667777776665444 236789999999999999999888863 2323344322 224456666
Q ss_pred HHHHHHhCCEEEEcCCCcccCCCCC--CHHHHHHHHHHHHHHcCCCEEEEc
Q 008319 324 LHSIISASDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVAT 372 (570)
Q Consensus 324 ldeIl~~sDgImIgrGDLg~eig~~--~v~~~qk~Ii~~c~~~gKPvivaT 372 (570)
+.+++..+|.+....-++..=.|.+ .... .+++.+...+.|.+.++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~-~~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSD-ALEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHH-HHHHHHHHHHhCCCEEEEE
Confidence 7788888999988877765444432 2222 2334444444566655444
No 408
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=40.56 E-value=84 Score=33.91 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred HHHhhhhhhcCCcEEEecCC---------CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEE
Q 008319 270 WEDIKFGVDNQVDFYAVSFV---------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMV 336 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV---------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImI 336 (570)
.+|.+.+.+.|+|+|.+|-. .+.+-+.++++++...+.++.||+ --||.|=.+|++. +|++.|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~----~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYV----DGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEE----eCCCCCHHHHHHHHHcCCCEEEE
Confidence 56677788999999998853 222334455665545555677776 2688888888877 899999
Q ss_pred cCCCcccCC--CCCC----HHHHHHHHHHHHHHcCC
Q 008319 337 ARGDLGAEL--PIED----VPLLQEDIIRRCRSMQK 366 (570)
Q Consensus 337 grGDLg~ei--g~~~----v~~~qk~Ii~~c~~~gK 366 (570)
||.=|-.-. |-+. +..+++++-......|.
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~ 335 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGV 335 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 987654322 2222 33444455555555554
No 409
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=40.50 E-value=5.4e+02 Score=29.18 Aligned_cols=180 Identities=14% Similarity=0.227 Sum_probs=99.2
Q ss_pred cCcchhhhHHHHHHhCCEEEEcC--CCcc--cCCCC---CCHHHHHHHHHHHHH------HcCCCEEEEccchhhhhcCC
Q 008319 316 ESADSIPNLHSIISASDGAMVAR--GDLG--AELPI---EDVPLLQEDIIRRCR------SMQKPVIVATNMLESMIDHP 382 (570)
Q Consensus 316 Et~~gv~NldeIl~~sDgImIgr--GDLg--~eig~---~~v~~~qk~Ii~~c~------~~gKPvivaTqmLeSM~~~~ 382 (570)
|++.-.+|+..+-+ -...+|+| |.|+ -+.|. ++...+...+.+... -.||-|++. .
T Consensus 195 ~npat~~Nl~~L~~-~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkvLIT----------a 263 (475)
T PRK13982 195 NNPATRRNVAQLKR-DGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLIT----------A 263 (475)
T ss_pred cCHHHHHHHHHHHH-CCCEEECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEEEEe----------c
Confidence 44445567766543 34555666 4454 25554 445555555554432 367777652 4
Q ss_pred CcChHHHhHH----------------HHHHHhCccEEEecccccCCC------CHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008319 383 TPTRAEVSDI----------------AIAVREGADAVMLSGETAHGK------FPLKAVKVMHTVALRTESSLPVSITPP 440 (570)
Q Consensus 383 ~PtrAEv~Dv----------------~nav~~G~D~vmLs~ETA~G~------yP~eaV~~m~~I~~~aE~~~~~~~~~~ 440 (570)
-||+.-+..| -.+...|+|..+++|-++.-. +++++.+-|.+-+.+. +
T Consensus 264 GpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~---~------- 333 (475)
T PRK13982 264 GPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVEAA---L------- 333 (475)
T ss_pred CCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHhh---C-------
Confidence 6777665443 345668999999998765321 1223333332222211 1
Q ss_pred CcccCCCCChhHHHHHHHHHHHhhcCCcEEE-------EcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccc-cCcEE
Q 008319 441 TQFSAHKSHMGDMFAFHSTTMANTLNTPIIV-------FTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLY-QGVMP 512 (570)
Q Consensus 441 ~~~~~~~~~~~~~ia~~av~~a~~~~a~Iiv-------~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~-rGV~P 512 (570)
++-|++ |+..-.+..++.+-.-..+.+-+.+++++...+.-. +.-.+
T Consensus 334 -------------------------~~Di~I~aAAVaDyrp~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l~~~~~~~~~ 388 (475)
T PRK13982 334 -------------------------PADIAIFAAAVADWRVATEGGQKLKKGAAGPPPLQLVENPDILATISKLAENRPP 388 (475)
T ss_pred -------------------------CCCEEEEeccccceeeccccccccCcCCCCCceeeeeeCcHHHHHHhhhcccCCC
Confidence 111111 222122223333321123468899999999998742 11114
Q ss_pred EEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEE
Q 008319 513 IYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVT 545 (570)
Q Consensus 513 il~~~~~d~d~~i~~al~~lke~Gllk~GD~VV 545 (570)
+++.+..+.++.++.|.+.++++|+ |.||
T Consensus 389 ~lVGFaaEt~~l~~~A~~KL~~K~~----D~Iv 417 (475)
T PRK13982 389 LVIGFAAETEHLIDNARAKLARKGC----DWIV 417 (475)
T ss_pred EEEEEccCchhHHHHHHHHHHHcCC----CEEE
Confidence 6777776678899999999999777 6554
No 410
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=40.48 E-value=54 Score=34.57 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=38.5
Q ss_pred hHHHhhhhhhcCCcEEEecC------CCChhHHHHHHHHHHhcCCCceEEEe--ecCcchhhhHHHHHHh--CCEEEEcC
Q 008319 269 DWEDIKFGVDNQVDFYAVSF------VKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA--SDGAMVAR 338 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~Sf------V~sa~dv~~vr~~l~~~~~~i~IiaK--IEt~~gv~NldeIl~~--sDgImIgr 338 (570)
-.+-++...+.|+++|.+-- -+...|+..++...+.. +++||+- |.|. +.+.++++. +||+||||
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~---~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSP---EDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SH---HHHHHHCCCH-SSEEEESH
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCH---HHHHHHHHhcCCcEEEEch
Confidence 34555667789999987642 12245666666555443 3888884 3332 333444444 89999999
Q ss_pred CCccc
Q 008319 339 GDLGA 343 (570)
Q Consensus 339 GDLg~ 343 (570)
|=|+.
T Consensus 215 gal~n 219 (309)
T PF01207_consen 215 GALGN 219 (309)
T ss_dssp HHCC-
T ss_pred hhhhc
Confidence 87754
No 411
>PRK07591 threonine synthase; Validated
Probab=40.34 E-value=3.4e+02 Score=29.97 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
..+...|+++|.|+.+. .|..+....+...-..|++.+..- |.| -++++.+.+++.+-+..+.
T Consensus 150 ~alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~ 212 (421)
T PRK07591 150 NSVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGF 212 (421)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEE
Confidence 34566889999999875 233333445667788999998774 345 4677777777654322111
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcC---C-cEEEEcCChHHHHHHHhc-----------CCCCeEEEEeCCH
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN---T-PIIVFTRTGSMAVILSHY-----------RPSSTIFAFTNQE 498 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a-~Iiv~T~sG~tA~~ls~~-----------RP~~pIiavt~~~ 498 (570)
.... .+ .+...-...+ +.++.++++ . .||+.+-+|.+..-+++. +|...|+++-+..
T Consensus 213 ~n~~-~~---p~~ieG~~Ti---a~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g 284 (421)
T PRK07591 213 VNIN-LR---PYYAEGSKTL---GYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEG 284 (421)
T ss_pred ecCC-CC---cccccchHHH---HHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCC
Confidence 1100 00 0000112334 456777775 3 799999999988666653 6888999999863
No 412
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=40.24 E-value=2.1e+02 Score=26.59 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.5
Q ss_pred cCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHH---------HHHHHHHHHHHh
Q 008319 107 IGPSTSSREMIWKLAEEGMNVARLNMSHGDHASH---------QKTIDLVKEYNS 152 (570)
Q Consensus 107 iGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~---------~~~i~~ir~~~~ 152 (570)
..+...+.+.+++|.++|.+.+.+++-|++.+.+ .+.++.++.+.+
T Consensus 93 tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 93 TRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred eCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3355678999999999999988888888887655 345666666543
No 413
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=40.21 E-value=4.1e+02 Score=28.47 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=86.2
Q ss_pred ChhhHHHhhhhhh-cC-CcEEEecC----CC-------ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--
Q 008319 266 TDKDWEDIKFGVD-NQ-VDFYAVSF----VK-------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-- 330 (570)
Q Consensus 266 t~kD~~dI~~~~~-~g-vd~I~~Sf----V~-------sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-- 330 (570)
++.+++|....++ .+ +|+|-+.+ +. +++.+.++-+.+++ ..++++++|| +| -+.++++|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~-~~~~Pv~vKl-~P-~~~di~~iA~~~~ 183 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKA-ATKVPVFVKL-AP-NITDIDEIAKAAE 183 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHh-cccCceEEEe-CC-CHHHHHHHHHHHH
Confidence 3566666655543 34 78875542 11 22233333333333 2458999999 55 67777777766
Q ss_pred ---CCEEEEc------C-CCcccCC--------CC---CCHHHHHHHHHHHHHHcC--CCEEEEccchhhhhcCCCcChH
Q 008319 331 ---SDGAMVA------R-GDLGAEL--------PI---EDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRA 387 (570)
Q Consensus 331 ---sDgImIg------r-GDLg~ei--------g~---~~v~~~qk~Ii~~c~~~g--KPvivaTqmLeSM~~~~~PtrA 387 (570)
+|||..- . .|+.... |+ +=-+...+.+-+.++..+ .|+|-. ...-
T Consensus 184 ~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv---------GGI~--- 251 (310)
T COG0167 184 EAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV---------GGIE--- 251 (310)
T ss_pred HcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe---------cCcC---
Confidence 6888753 1 4444421 11 234556666667777777 887742 2332
Q ss_pred HHhHHHHHHHhCccEEEecccccCCCC-HHHHHHHHHHHHHHhh
Q 008319 388 EVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTE 430 (570)
Q Consensus 388 Ev~Dv~nav~~G~D~vmLs~ETA~G~y-P~eaV~~m~~I~~~aE 430 (570)
...|.+..++.||+.+.+- ||.=.+ |--+=++.+.+.+..|
T Consensus 252 s~~DA~E~i~aGA~~vQv~--Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 252 TGEDALEFILAGASAVQVG--TALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred cHHHHHHHHHcCCchheee--eeeeeeCchHHHHHHHHHHHHHH
Confidence 2568899999999998884 676666 5444444444444444
No 414
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=40.14 E-value=99 Score=31.58 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEec
Q 008319 451 GDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQ 516 (570)
Q Consensus 451 ~~~ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~ 516 (570)
...||..|..+-.. .=.+|=.+|.|+..++++=|..++-.+|++-.+++.|.=..++.-++..
T Consensus 80 K~~IA~~Aa~~I~~---g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~G 142 (251)
T PRK13509 80 KVRIAKAASQLCNP---GESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMG 142 (251)
T ss_pred HHHHHHHHHHhCCC---CCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEEC
Confidence 45677666555433 3377788999999999998878899999999999988766676655543
No 415
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=40.11 E-value=43 Score=37.69 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=41.3
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
+..+=+-+|.+.+..+.++.|+++|+++.=+..+||..+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 34444556777788899999999999999999999999887777777775
No 416
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=39.72 E-value=4e+02 Score=26.65 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=77.5
Q ss_pred hHHHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeecCcch------------hhhHHHHHH
Q 008319 269 DWEDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 329 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g------------v~NldeIl~ 329 (570)
+.+++..|.+.|+|-|-+- ...|...++.+++ ..++++.++|--..| .+.+....+
T Consensus 9 s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~-----~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 9 SLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQARE-----AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHH-----HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHh-----hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 4567777888899977542 2234444444443 357889999976665 122333333
Q ss_pred h-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccc
Q 008319 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (570)
Q Consensus 330 ~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (570)
. +||+++|- |.-+-.+ +. ...++++..|. |.|+-+- |..-..|...+. +-..+..|+|.|+-||-
T Consensus 84 ~GadG~VfG~--L~~dg~i-D~-~~~~~Li~~a~--~~~~tFH------RAfD~~~d~~~a--l~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 84 LGADGFVFGA--LTEDGEI-DE-EALEELIEAAG--GMPVTFH------RAFDEVPDPEEA--LEQLIELGFDRVLTSGG 149 (201)
T ss_dssp TT-SEEEE----BETTSSB--H-HHHHHHHHHHT--TSEEEE-------GGGGGSSTHHHH--HHHHHHHT-SEEEESTT
T ss_pred cCCCeeEEEe--ECCCCCc-CH-HHHHHHHHhcC--CCeEEEe------CcHHHhCCHHHH--HHHHHhcCCCEEECCCC
Confidence 3 89999973 2221111 11 45567777765 8887762 344444554442 34566779999998876
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcC
Q 008319 409 TAHGKFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~~ 432 (570)
.. -..+-+..++++++.+...
T Consensus 150 ~~---~a~~g~~~L~~lv~~a~~~ 170 (201)
T PF03932_consen 150 AP---TALEGIENLKELVEQAKGR 170 (201)
T ss_dssp SS---STTTCHHHHHHHHHHHTTS
T ss_pred CC---CHHHHHHHHHHHHHHcCCC
Confidence 52 2335667777777777643
No 417
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=39.39 E-value=2.2e+02 Score=26.55 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 353 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 353 ~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
+..++++.++++|+++++-|- . +..+...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 568999999999999998652 1 134566788999999874
No 418
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=39.29 E-value=1.1e+02 Score=31.10 Aligned_cols=64 Identities=19% Similarity=0.076 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHhhcCCcEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEec
Q 008319 450 MGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQ 516 (570)
Q Consensus 450 ~~~~ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~ 516 (570)
...+||..|.++-..-. .+|=.+|.|...++++=|..++-.+|++..++..|.-.-++.-++..
T Consensus 79 ~K~~IA~~Aa~lI~~gd---~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 79 HKADIAREALAWIEEGM---VIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHHhCCCCC---EEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEEC
Confidence 34677777666655433 66778999999999998887899999999999999877777766553
No 419
>PRK05638 threonine synthase; Validated
Probab=38.98 E-value=2.7e+02 Score=30.80 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 008319 355 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 434 (570)
Q Consensus 355 k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~ 434 (570)
..+...|+++|.|+.+. .|..+....+...-..|++.+... |. .-++++...+++.+ +..+.
T Consensus 125 ~alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~-~~~~~ 186 (442)
T PRK05638 125 ASVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL-NGLYN 186 (442)
T ss_pred HHHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh-CCeEe
Confidence 34566889999999875 343344455677788899998874 33 45777777766533 11111
Q ss_pred CCCCCCCcccCCCCChhHHHHHHHHHHHhhcCC-cEEEEcCChHHHHHHHh----cCC-----C-CeEEEEeC
Q 008319 435 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSH----YRP-----S-STIFAFTN 496 (570)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv~T~sG~tA~~ls~----~RP-----~-~pIiavt~ 496 (570)
..+..+. ...+...--+.+++++++. .||+.+-+|.++.-+++ ++| . ..|+++-+
T Consensus 187 ~~~~~np-------~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 187 VTPEYNI-------IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred cCCCCCh-------hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 1111110 1122223334567777777 89999999999866654 334 2 26888877
No 420
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=38.95 E-value=5.7e+02 Score=28.17 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=77.4
Q ss_pred CChhhHHHhh-hhhhcCCcEEEecCC---------------CChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHH
Q 008319 265 ITDKDWEDIK-FGVDNQVDFYAVSFV---------------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII 328 (570)
Q Consensus 265 lt~kD~~dI~-~~~~~gvd~I~~SfV---------------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl 328 (570)
.++.|+.++. ..-+.|+|+|-+.|- ++++.+.++-+.+.+. .++++++||= + -+.++.+++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia 200 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPA 200 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHH
Confidence 3567776654 444678999877652 2334444443334332 3689999994 3 244566666
Q ss_pred Hh-----CCEEEEc-----CCCc--cc-----------CCC-CC---CHHHHHHHHHHHHHHc------CCCEEEEccch
Q 008319 329 SA-----SDGAMVA-----RGDL--GA-----------ELP-IE---DVPLLQEDIIRRCRSM------QKPVIVATNML 375 (570)
Q Consensus 329 ~~-----sDgImIg-----rGDL--g~-----------eig-~~---~v~~~qk~Ii~~c~~~------gKPvivaTqmL 375 (570)
++ +|||.+- +-++ -. ..| +. =-+.++..+-+.++.. +.|++-.+
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvG--- 277 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIG--- 277 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEEC---
Confidence 64 7887652 1111 10 000 11 1233333332233332 46776432
Q ss_pred hhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC-HHHHHHHHHHHH
Q 008319 376 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVA 426 (570)
Q Consensus 376 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y-P~eaV~~m~~I~ 426 (570)
..- .-.|++.+++.|+|+|.+. |+.-.+ |--.-++.+.+.
T Consensus 278 ------GI~---s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp~vi~~i~~~L~ 318 (385)
T PLN02495 278 ------GVE---TGGDAAEFILLGADTVQVC--TGVMMHGYPLVKNLCAELQ 318 (385)
T ss_pred ------CCC---CHHHHHHHHHhCCCceeEe--eeeeecCcHHHHHHHHHHH
Confidence 222 2458999999999999986 555555 533333333333
No 421
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=38.95 E-value=1.4e+02 Score=25.90 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
+..+++++++.|-+..+.+ -.+..+++-..-.|.|+++ +.+...++++-+.+...++|+..
T Consensus 16 ~~ki~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~Diil~~----------Pqv~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEA-----VPESELEEYIDDADVVLLG----------PQVRYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHHHCCCceEEEE-----ecHHHHHHhcCCCCEEEEC----------hhHHHHHHHHHHHhccCCCcEEE
Confidence 5678899988887744443 3555666656668999987 57888899999999999999986
No 422
>PLN02826 dihydroorotate dehydrogenase
Probab=38.93 E-value=5.8e+02 Score=28.29 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=49.6
Q ss_pred CCceEEEeecCcchhhhHHHHHHh-----CCEEEEc-----C-CCcc-----cCC-CC---CCHHHHHHHHHHHHHHc--
Q 008319 307 ADIHVIVKIESADSIPNLHSIISA-----SDGAMVA-----R-GDLG-----AEL-PI---EDVPLLQEDIIRRCRSM-- 364 (570)
Q Consensus 307 ~~i~IiaKIEt~~gv~NldeIl~~-----sDgImIg-----r-GDLg-----~ei-g~---~~v~~~qk~Ii~~c~~~-- 364 (570)
.+++|++||=--..-+++++|++. +|||++. | +|+- .+. |+ +-.+...+.+-+..+..
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 358999999322222345555553 8999775 3 3331 111 12 22233444444444444
Q ss_pred CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 365 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 365 gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
..|+|-.+ ..- .-.|++.++..||++|.+-
T Consensus 341 ~ipIIgvG---------GI~---sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 341 KIPLVGCG---------GVS---SGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred CCcEEEEC---------CCC---CHHHHHHHHHhCCCeeeec
Confidence 36777543 222 2458999999999999985
No 423
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=38.56 E-value=96 Score=30.76 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=41.8
Q ss_pred EEEeccCCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEe-------CcEeccCcccccC
Q 008319 200 TVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVD-------GGELKSRRHLNVR 256 (570)
Q Consensus 200 ~i~v~~~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~-------gG~l~s~KgIn~p 256 (570)
.+.+..+..+..+++||.|-+|. +.|+|.+++++.+..-+.. =|.++...-||+.
T Consensus 23 ~~~i~~~~~~~~l~~g~SIAvnG--vcLTV~~~~~~~f~~~l~~eTl~~T~l~~l~~G~~VNLE 84 (194)
T PRK09289 23 RLTIEAGKLLSDLKLGDSIAVNG--VCLTVTEIDGDSFTVDVSPETLRRTNLGDLKVGDRVNLE 84 (194)
T ss_pred EEEEEcCccccccccCCEEEEcc--EEEEEEEEcCCEEEEEEEHHHhhhCchhhccCCCEEEEe
Confidence 45555555556699999999997 8999999999888877653 3566677777774
No 424
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=38.54 E-value=3e+02 Score=28.42 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcch-hhhHHHHHHhCCEEEEcCCCcccCCCCC
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-IPNLHSIISASDGAMVARGDLGAELPIE 348 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g-v~NldeIl~~sDgImIgrGDLg~eig~~ 348 (570)
.+-++.+.+.|+|++.++=..- ++..++.+.+++.|-+.-.+. ++.. -+.+..|.+.++|.+=-.+=.|+.=.-.
T Consensus 107 e~f~~~~~~aGvdGviipDLp~-ee~~~~~~~~~~~gl~~I~lv---ap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~ 182 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIPDLPP-EEAEELRAAAKKHGLDLIFLV---APTTTDERLKKIASHASGFVYYVSRAGVTGARS 182 (258)
T ss_pred HHHHHHHHHcCCcEEEECCCCH-HHHHHHHHHHHHcCCcEEEEe---CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc
Q ss_pred CHHHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCc
Q 008319 349 DVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 400 (570)
Q Consensus 349 ~v~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 400 (570)
..+.-....++.++++ ++|+++ -...-+..++..+... .||+
T Consensus 183 ~~~~~~~~~i~~vk~~~~~pv~v---------GfGI~~~e~v~~~~~~-ADGv 225 (258)
T PRK13111 183 ADAADLAELVARLKAHTDLPVAV---------GFGISTPEQAAAIAAV-ADGV 225 (258)
T ss_pred CCCccHHHHHHHHHhcCCCcEEE---------EcccCCHHHHHHHHHh-CCEE
No 425
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=38.37 E-value=3.5e+02 Score=27.08 Aligned_cols=124 Identities=17% Similarity=0.176 Sum_probs=76.6
Q ss_pred hhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCc---------chhhhHHHHHHh-CCEEEEcCCCcccC
Q 008319 275 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA---------DSIPNLHSIISA-SDGAMVARGDLGAE 344 (570)
Q Consensus 275 ~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~---------~gv~NldeIl~~-sDgImIgrGDLg~e 344 (570)
-+...|+-+|-.. +.+||+++|+.. +++||.-|-.. --++..++++++ +|.|-+.- ..-
T Consensus 7 Aa~~gGA~giR~~---~~~dI~aik~~v-----~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa---T~R 75 (192)
T PF04131_consen 7 AAEEGGAVGIRAN---GVEDIRAIKKAV-----DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA---TDR 75 (192)
T ss_dssp HHHHCT-SEEEEE---SHHHHHHHHTTB------S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE----SSS
T ss_pred HHHHCCceEEEcC---CHHHHHHHHHhc-----CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec---CCC
Confidence 3456788887766 889998888754 56777655321 135677888887 89888851 111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEE--ecccccCCCCHHHHHHHH
Q 008319 345 LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM--LSGETAHGKFPLKAVKVM 422 (570)
Q Consensus 345 ig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm--Ls~ETA~G~yP~eaV~~m 422 (570)
+-+ .-.++++...++.+.+++ | . -+-+.|+-+|...|+|+|= |||=|.-.+..---.+.+
T Consensus 76 -~Rp---~~l~~li~~i~~~~~l~M-A--------D-----ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv 137 (192)
T PF04131_consen 76 -PRP---ETLEELIREIKEKYQLVM-A--------D-----ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELV 137 (192)
T ss_dssp -S-S---S-HHHHHHHHHHCTSEEE-E--------E------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHH
T ss_pred -CCC---cCHHHHHHHHHHhCcEEe-e--------e-----cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHH
Confidence 112 456778888899883333 2 2 1236678999999999997 777666554444567777
Q ss_pred HHHHH
Q 008319 423 HTVAL 427 (570)
Q Consensus 423 ~~I~~ 427 (570)
.+++.
T Consensus 138 ~~l~~ 142 (192)
T PF04131_consen 138 RELVQ 142 (192)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77775
No 426
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=37.92 E-value=69 Score=35.92 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=59.7
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChh----HHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh---CCEEEEcCCC
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAK----VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---SDGAMVARGD 340 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~----dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~---sDgImIgrGD 340 (570)
++.++++.+++.|++.|++.. |+-. |.....+++...-.++.+|+ |+ |+.+.+++... +||+.||-.-
T Consensus 167 h~~~El~~al~~~a~iiGiNn-RdL~t~~vd~~~~~~l~~~ip~~~~~vs--eS--GI~t~~d~~~~~~~~davLiG~~l 241 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINN-RNLRDLSIDLNRTRELAPLIPADVIVIS--ES--GIYTHAQVRELSPFANGFLIGSSL 241 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceECHHHHHHHHhhCCCCcEEEE--eC--CCCCHHHHHHHHhcCCEEEECHHH
Confidence 677888889999999998873 2211 12222222222233455555 33 66665555433 8999998654
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 341 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 341 Lg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
+.. ++....-++++. ..=|-|++. ...|+..+...|+|++=+
T Consensus 242 m~~----~d~~~~~~~L~~---~~vKICGit----------------~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 242 MAE----DDLELAVRKLIL---GENKVCGLT----------------RPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred cCC----CCHHHHHHHHhc---cccccCCCC----------------CHHHHHHHHhCCCCEEee
Confidence 433 333333333322 122444431 234566677778887533
No 427
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=37.41 E-value=4.4e+02 Score=28.92 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEE--EecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV--MLSGETAHGKFPLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~v--mLs~ETA~G~yP~eaV~~m~~I~~~aE~~~ 433 (570)
-+...|+..|.|+.+. .|..+....+...-..|++.+ .+.+ ...-++++...+++++-. ..
T Consensus 78 a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~g-----~~~~~a~~~a~~~~~~~g-~~ 140 (409)
T TIGR02079 78 GFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILVG-----DTFDQCAAAAREHVEDHG-GT 140 (409)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEeC-----CCHHHHHHHHHHHHHhcC-CE
Confidence 4566799999999875 222222333556678899853 4433 334467666666554422 21
Q ss_pred CCCCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 434 PVSITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
+..+ |.+. ...+.-..-+.++.++++ . .||+..-+|.+..-++ .++|...|+++-+..
T Consensus 141 ~~~~-~~~~------~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 141 FIPP-FDDP------RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred EeCC-CCCH------hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 1111 1111 112222333567777775 4 8999888888765554 457999999999864
No 428
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=37.40 E-value=2.7e+02 Score=30.59 Aligned_cols=86 Identities=7% Similarity=0.077 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHhhcCCcEEEEcCChHHHHHHHhc--CCCCeEEEEeCCHHHHH--HhccccCcEEEEecCCCCHHHHH
Q 008319 450 MGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHY--RPSSTIFAFTNQERIKQ--RLVLYQGVMPIYMQFSDDVEETF 525 (570)
Q Consensus 450 ~~~~ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~--RP~~pIiavt~~~~taR--rL~L~rGV~Pil~~~~~d~d~~i 525 (570)
..+.-|..++..+.+.+...|+...||++++.+|.| +-..|.+.++|.....+ ......|+.-+.+.. +.++..
T Consensus 100 FKdRga~~~i~~a~~~g~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~ 177 (398)
T TIGR03844 100 FKELEALPTMQRLKERGGKTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAI 177 (398)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHH
Confidence 345556666666666677667777889998888876 34467777777542222 123566776655542 456666
Q ss_pred HHHHHHHHHcCC
Q 008319 526 SRAIKLLMDKNL 537 (570)
Q Consensus 526 ~~al~~lke~Gl 537 (570)
+.+.+.+.+.|+
T Consensus 178 ~~a~~~a~~~g~ 189 (398)
T TIGR03844 178 ALADRIATLPGF 189 (398)
T ss_pred HHHHHHHHhCCc
Confidence 666666666664
No 429
>PRK01712 carbon storage regulator; Provisional
Probab=37.33 E-value=80 Score=26.04 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=25.1
Q ss_pred cccCCEEEEeCCeeEEEEEEEeCCeEEEEEE
Q 008319 212 VEVGDILLVDGGMMSLAVKSKTKDLVKCIVV 242 (570)
Q Consensus 212 v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~ 242 (570)
-++|+.|.|+| .|..+|.++.++.|..-+.
T Consensus 6 Rk~gE~I~Igd-~I~I~V~~i~~~~VrlGI~ 35 (64)
T PRK01712 6 RKVGESLMIGD-DIEVTVLGVKGNQVRIGIN 35 (64)
T ss_pred ccCCCEEEeCC-CEEEEEEEEeCCEEEEEEE
Confidence 48999999998 6999999999888766444
No 430
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=37.27 E-value=2.2e+02 Score=27.52 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=58.7
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCCcccCC
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL 345 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGDLg~ei 345 (570)
.+++..+++.|+|+|..+- +-.++ .++.+.. +..+++ |+.+++|+.++ +|.|.+-+.+.
T Consensus 66 ~~~~~~a~~~Ga~~i~~p~--~~~~~---~~~~~~~--~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~~---- 128 (190)
T cd00452 66 PEQADAAIAAGAQFIVSPG--LDPEV---VKAANRA--GIPLLP------GVATPTEIMQALELGADIVKLFPAEA---- 128 (190)
T ss_pred HHHHHHHHHcCCCEEEcCC--CCHHH---HHHHHHc--CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCcc----
Confidence 3456677789999998773 22333 3333332 345655 44466666654 79998855321
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccc
Q 008319 346 PIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (570)
Q Consensus 346 g~~~v~~~qk~Ii~~c~~~-gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (570)
. .+...+.+ +... +.|++.. ... + ...+..+...|+|++.+++-.
T Consensus 129 --~-g~~~~~~l---~~~~~~~p~~a~---------GGI-~---~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 129 --V-GPAYIKAL---KGPFPQVRFMPT---------GGV-S---LDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred --c-CHHHHHHH---HhhCCCCeEEEe---------CCC-C---HHHHHHHHHCCCEEEEEchhc
Confidence 1 22222332 2222 4676642 222 2 245778899999999987554
No 431
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=37.20 E-value=6.8e+02 Score=28.60 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=93.7
Q ss_pred CCChhhHHHhhhh-hhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeecC-cchhh-----hHHHHHHh-CCE-
Q 008319 264 SITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP-----NLHSIISA-SDG- 333 (570)
Q Consensus 264 ~lt~kD~~dI~~~-~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIEt-~~gv~-----NldeIl~~-sDg- 333 (570)
.++..++..|... .+.|+|.|=+.| .-++.|.+.++...+..-.+..+.+..=. ..++. .++..+.. .|.
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i 102 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVV 102 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEE
Confidence 4566777666544 468999998866 45677766666554321123444443211 12221 22333333 453
Q ss_pred -EEEcCCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEecc
Q 008319 334 -AMVARGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 407 (570)
Q Consensus 334 -ImIgrGDLg~----eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 407 (570)
+++.-.|+-. .+..+++....++.++.++++|..|-+.+. .......-+..-+.+++. +...|+|.+.|.
T Consensus 103 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e---~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~- 178 (524)
T PRK12344 103 TIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE---HFFDGYKANPEYALATLKAAAEAGADWVVLC- 178 (524)
T ss_pred EEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc---cccccccCCHHHHHHHHHHHHhCCCCeEEEc-
Confidence 4444444321 122356777778999999999998765321 100111112222444443 456799999984
Q ss_pred cccCCCCHHHHHHHHHHHHHHh
Q 008319 408 ETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 408 ETA~G~yP~eaV~~m~~I~~~a 429 (570)
.|.=.-+|.++-+++..+.+..
T Consensus 179 DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHhc
Confidence 8887889999999999888776
No 432
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.02 E-value=4.3e+02 Score=28.37 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=18.3
Q ss_pred CCCChhhHHHh--------hhhhhcCCcEEEec
Q 008319 263 PSITDKDWEDI--------KFGVDNQVDFYAVS 287 (570)
Q Consensus 263 p~lt~kD~~dI--------~~~~~~gvd~I~~S 287 (570)
..||..|++.| +.+.+.|+|+|-+-
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 164 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIH 164 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 46888888777 34567899998653
No 433
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=36.86 E-value=1.9e+02 Score=28.76 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=39.4
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIgrG 339 (570)
+++..+.+.|+|+|.+ |=...-....++.+......++++++- -|+ +|+.+.++. +|++-++.+
T Consensus 115 ~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~ 181 (206)
T PRK09140 115 TEAFAALRAGAQALKL-FPASQLGPAGIKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSA 181 (206)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehH
Confidence 4467777899999987 222222233344433322224666662 233 799999998 999998754
No 434
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=36.62 E-value=1.4e+02 Score=30.33 Aligned_cols=83 Identities=14% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHhhhhhhcCCcEEEecCCCC--------hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-----CCEEEE
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKD--------AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMV 336 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~s--------a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-----sDgImI 336 (570)
.+.++...+.|+|.|.++-+.+ -+-+.++++.. ++++|+ .-|+.+.+++.+. +||+++
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~-----~ipvia----~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV-----KIPVIA----SGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC-----CCCEEE----eCCCCCHHHHHHHHHcCCcceeeE
Q ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE
Q 008319 337 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV 368 (570)
Q Consensus 337 grGDLg~eig~~~v~~~qk~Ii~~c~~~gKPv 368 (570)
|+....-.++ .+.+.+.|.++|.|+
T Consensus 229 g~a~~~~~~~-------~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 229 ASVFHYREIT-------IGEVKEYLAERGIPV 253 (254)
T ss_pred hHHHhCCCCC-------HHHHHHHHHHCCCcc
No 435
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=36.52 E-value=5.2e+02 Score=26.99 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=67.4
Q ss_pred HHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 008319 357 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 436 (570)
Q Consensus 357 Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~ 436 (570)
+...|+..|.|+.+. .|..+........-..|++.+..-+ ..-++.....+++++- .++..
T Consensus 85 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~l~~~GA~Vi~~~~------~~~~~~~~a~~~~~~~--~~~~~ 145 (324)
T cd01563 85 LAAYAARAGIKCVVF-----------LPAGKALGKLAQALAYGATVLAVEG------NFDDALRLVRELAEEN--WIYLS 145 (324)
T ss_pred HHHHHHHcCCceEEE-----------EeCCCCHHHHHHHHHcCCEEEEECC------cHHHHHHHHHHHHHhc--Ceecc
Confidence 446799999998874 1222222334445567998877532 3446666666665442 22221
Q ss_pred CCCCCcccCCCCChhHHHHHHHHHHHhhcC---C-cEEEEcCChHHHHHHHhc----C------CCCeEEEEeCCH
Q 008319 437 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN---T-PIIVFTRTGSMAVILSHY----R------PSSTIFAFTNQE 498 (570)
Q Consensus 437 ~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a-~Iiv~T~sG~tA~~ls~~----R------P~~pIiavt~~~ 498 (570)
++ .+.. ..+....-+.++.++++ . .||+.+-+|.++--++++ + |...||++.+..
T Consensus 146 ~~-~n~~------~~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~ 214 (324)
T cd01563 146 NS-LNPY------RLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEG 214 (324)
T ss_pred CC-CCcc------eecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCC
Confidence 11 1110 11111223456666664 4 799999999998888764 3 578899998753
No 436
>PLN02535 glycolate oxidase
Probab=36.46 E-value=90 Score=34.03 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=45.0
Q ss_pred HHhhhhhhcCCcEEEecCCCC------hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKD------AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 340 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~s------a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgrGD 340 (570)
+|.+.+.+.|+|+|.+|...- ..-+..+.+..+..+.++.||+ --||.+-.+|+++ +|++++||.=
T Consensus 235 ~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~----dGGIr~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL----DGGVRRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe----eCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 446677889999999983321 1113334444333345677776 2588888888877 8999999876
Q ss_pred cc
Q 008319 341 LG 342 (570)
Q Consensus 341 Lg 342 (570)
|-
T Consensus 311 l~ 312 (364)
T PLN02535 311 IY 312 (364)
T ss_pred Hh
Confidence 53
No 437
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=36.41 E-value=88 Score=33.38 Aligned_cols=67 Identities=22% Similarity=0.333 Sum_probs=40.7
Q ss_pred hhhhhcCCcEEEecCCCCh-------hHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--CCEEEEcCCCccc
Q 008319 274 KFGVDNQVDFYAVSFVKDA-------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA 343 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa-------~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDgImIgrGDLg~ 343 (570)
+.+.+.|++.+.+= .|++ .|+..+++.-+... ++.||+-=+ ....+...+.++. +||+|||||=|+.
T Consensus 159 ~~~~~~g~~~ltVH-gRtr~~~y~~~ad~~~I~~vk~~~~-~ipvi~NGd-I~s~~~a~~~l~~tg~DgVMigRga~~n 234 (323)
T COG0042 159 RILEDAGADALTVH-GRTRAQGYLGPADWDYIKELKEAVP-SIPVIANGD-IKSLEDAKEMLEYTGADGVMIGRGALGN 234 (323)
T ss_pred HHHHhcCCCEEEEe-cccHHhcCCCccCHHHHHHHHHhCC-CCeEEeCCC-cCCHHHHHHHHHhhCCCEEEEcHHHccC
Confidence 44557789988664 3443 34555554433322 277777211 1245566777777 8999999998764
No 438
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=35.91 E-value=3.2e+02 Score=28.42 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=53.1
Q ss_pred HHHhhhhhhcCCcEEEe-cCC-----------CChhHHHHHHHHHHhcCCCceEEEeecCcch----hhhHHHHHHh---
Q 008319 270 WEDIKFGVDNQVDFYAV-SFV-----------KDAKVVHELKDYLKSCNADIHVIVKIESADS----IPNLHSIISA--- 330 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~-SfV-----------~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g----v~NldeIl~~--- 330 (570)
.+.+..|...|+|||-+ .|+ .++.++.+.|+.| +.+++|++-|--+.+ =..++|++..
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~ 168 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---GSEVKILADIVVKHAVHLGNRDLESIALDTVE 168 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---CCCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence 35666677789999877 433 1233333344444 568999997643333 2467787763
Q ss_pred ---CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Q 008319 331 ---SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372 (570)
Q Consensus 331 ---sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaT 372 (570)
+|||++. |...|.+.-....+++-+ .....|+++++
T Consensus 169 ~~~aDavivt----G~~TG~~~d~~~l~~vr~--~~~~~Pvllgg 207 (257)
T TIGR00259 169 RGLADAVILS----GKTTGTEVDLELLKLAKE--TVKDTPVLAGS 207 (257)
T ss_pred hcCCCEEEEC----cCCCCCCCCHHHHHHHHh--ccCCCeEEEEC
Confidence 7999996 333443322222222211 12357999874
No 439
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=35.75 E-value=5e+02 Score=26.55 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=92.0
Q ss_pred CCChhhHHHhh-hhhhcCCcEEEecC-CCChhHHHHHHHHHHhcCCCceEEEeec-CcchhhhHHHHHHh-----CCEEE
Q 008319 264 SITDKDWEDIK-FGVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIE-SADSIPNLHSIISA-----SDGAM 335 (570)
Q Consensus 264 ~lt~kD~~dI~-~~~~~gvd~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IiaKIE-t~~gv~NldeIl~~-----sDgIm 335 (570)
.++..++..|. .-.+.|++.|=+.| +.++++...++.+ .....+..+.+.+- +.+++ +..++. .|.|-
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l-~~~~~~~~~~~l~r~~~~~v---~~a~~~~~~~~~~~i~ 91 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRI-AREVLNAEICGLARAVKKDI---DAAAEALKPAKVDRIH 91 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHhCCCCEEEEEccCCHhhH---HHHHHhCCCCCCCEEE
Confidence 34667765554 44578999986654 4477777655554 33334566666552 23333 333333 46444
Q ss_pred Ec--CCCcc----cCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhCccEEEeccc
Q 008319 336 VA--RGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGE 408 (570)
Q Consensus 336 Ig--rGDLg----~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~E 408 (570)
+. -.|.- ..++.++.....+.+++.+++.|..+.+. ....+.-+...+.+++. +...|+|.+.|. +
T Consensus 92 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~------~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-D 164 (268)
T cd07940 92 TFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFS------AEDATRTDLDFLIEVVEAAIEAGATTINIP-D 164 (268)
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEe------eecCCCCCHHHHHHHHHHHHHcCCCEEEEC-C
Confidence 42 11111 01122334455568888999999876642 12233344555555544 455799999995 7
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh
Q 008319 409 TAHGKFPLKAVKVMHTVALRTE 430 (570)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE 430 (570)
|.=.-+|.+.-+.++.+-+...
T Consensus 165 T~G~~~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKENVP 186 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC
Confidence 7777789999998888876543
No 440
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=35.69 E-value=2.1e+02 Score=25.28 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=37.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChH----------HHHHHHHHHHHHHh
Q 008319 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA----------SHQKTIDLVKEYNS 152 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e----------~~~~~i~~ir~~~~ 152 (570)
..+|..+..+...+.+.++.|.+.|++.+++++...+.+ .+.++++.++.+.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE 138 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 445555444444459999999999999999999999886 33444566665543
No 441
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=35.64 E-value=96 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=32.4
Q ss_pred HhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHH
Q 008319 389 VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 427 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~ 427 (570)
+.....++..|+|.++.-.--.....|.++++.+.+.+.
T Consensus 190 ~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 190 VMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 446788999999999988777778889999998887654
No 442
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=35.61 E-value=5e+02 Score=26.54 Aligned_cols=144 Identities=18% Similarity=0.250 Sum_probs=79.2
Q ss_pred ChhhH-HHhhhhhhcC-CcEEEecCCCChhHHHHHHHHHHhcCCCceEEEee---cCcchhhhHHHHHHh-----CCEEE
Q 008319 266 TDKDW-EDIKFGVDNQ-VDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI---ESADSIPNLHSIISA-----SDGAM 335 (570)
Q Consensus 266 t~kD~-~dI~~~~~~g-vd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKI---Et~~gv~NldeIl~~-----sDgIm 335 (570)
++.++ +-++.+++.| +|+|-+-.-...+.+.++.+..+. .+.++|+-- +..-..+++.+++.. +|.+=
T Consensus 93 ~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~--~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivK 170 (253)
T PRK02412 93 SDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHE--HGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVK 170 (253)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHH--cCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEE
Confidence 33443 5557788888 899988754444445555554433 345666644 222233445555544 46665
Q ss_pred EcCCCcccCCCCCCHHHHHHHHHHHHHH--cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHH-hCccEEEecccccCC
Q 008319 336 VARGDLGAELPIEDVPLLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 412 (570)
Q Consensus 336 IgrGDLg~eig~~~v~~~qk~Ii~~c~~--~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G 412 (570)
|+. ..-...++..+.+- ...+++ .++|++.- +|-....+|| +.+.+. --.-...+..++|-|
T Consensus 171 ia~----~a~~~~D~~~ll~~-~~~~~~~~~~~P~i~~-----~MG~~G~~SR-----il~~~~GS~~ty~~~~~~sAPG 235 (253)
T PRK02412 171 IAV----MPQSEQDVLTLLNA-TREMKELYADQPLITM-----SMGKLGRISR-----LAGEVFGSSWTFASLDKASAPG 235 (253)
T ss_pred EEe----cCCCHHHHHHHHHH-HHHHHhcCCCCCEEEE-----eCCCCchHHH-----cchhhhCCcceecCCCCCCCCC
Confidence 541 01112344444432 233333 57898753 4666666666 555554 112223367889999
Q ss_pred CCHHHHHHHHHHHH
Q 008319 413 KFPLKAVKVMHTVA 426 (570)
Q Consensus 413 ~yP~eaV~~m~~I~ 426 (570)
.++++-++.+-+..
T Consensus 236 Q~~~~el~~i~~~l 249 (253)
T PRK02412 236 QISVEDLRRILEIL 249 (253)
T ss_pred CCCHHHHHHHHHHh
Confidence 99998776655543
No 443
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=35.59 E-value=87 Score=32.65 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH-hCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~-~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTq 373 (570)
+..+++.+.+.|.++.|.+- +..---+|+++++. -.|.|+.+-++ +.....+.+.|+++++|+|.+.
T Consensus 86 ve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~----------~~~k~~L~~~c~~~~ip~I~~g- 153 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDS----------VRPKAALIAYCRRNKIPLVTTG- 153 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEC-
Confidence 34566777777887766543 32222457777775 37877765322 2345578999999999999762
Q ss_pred chhhhhcCCCcChHHHhHHHHH
Q 008319 374 MLESMIDHPTPTRAEVSDIAIA 395 (570)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~na 395 (570)
.......||+-++.|++..
T Consensus 154 ---Gag~k~dp~~~~~~di~~t 172 (268)
T PRK15116 154 ---GAGGQIDPTQIQVVDLAKT 172 (268)
T ss_pred ---CcccCCCCCeEEEEeeecc
Confidence 2234668999888886443
No 444
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=35.57 E-value=1.5e+02 Score=30.76 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred HhHHHHHHHhCccEEEecccccCCCCHH------HHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHHHHHHH
Q 008319 389 VSDIAIAVREGADAVMLSGETAHGKFPL------KAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMA 462 (570)
Q Consensus 389 v~Dv~nav~~G~D~vmLs~ETA~G~yP~------eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a 462 (570)
+.|....-.-|+|++|+. ..|..|. +++..|..|..+.-......---+-|+ ++...+++.+.+.-|
T Consensus 37 ~~dA~~leegG~DavivE---N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLr----Nd~vaA~~IA~a~gA 109 (263)
T COG0434 37 VRDAAALEEGGVDAVIVE---NYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLR----NDAVAALAIAYAVGA 109 (263)
T ss_pred HHHHHHHHhCCCcEEEEe---ccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeec----cccHHHHHHHHhcCC
Q ss_pred h--hcCC-cEEEEcCCh---HHHHHHHhcCCCCeEEEEeCCHHHHHHhccccCcEEEEecCCCCHHHHHHHHHHHHHHcC
Q 008319 463 N--TLNT-PIIVFTRTG---SMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKN 536 (570)
Q Consensus 463 ~--~~~a-~Iiv~T~sG---~tA~~ls~~RP~~pIiavt~~~~taRrL~L~rGV~Pil~~~~~d~d~~i~~al~~lke~G 536 (570)
. ++|. .=+.+|..| .-|..+.|||++.+ .+...+--|.+=+.....+. .+..+..-..++|
T Consensus 110 ~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-----------~~v~vlADv~VKHa~~l~~~--~~~~~v~dtver~ 176 (263)
T COG0434 110 DFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-----------SRVKVLADVHVKHAVHLGNR--SLEEAVKDTVERG 176 (263)
T ss_pred CEEEEEeeeceEecccceecchHHHHHHHHHhcc-----------CCcEEEeecchhcccccCCc--CHHHHHHHHHHcc
Q ss_pred CCCCCCEEEEEecCCCCCCCCCC
Q 008319 537 LVTKGEFVTLVQSGAQPIWRQES 559 (570)
Q Consensus 537 llk~GD~VVvv~G~~~p~~~~G~ 559 (570)
+. .-|+++| |+.|+
T Consensus 177 ~a----DaVI~tG-----~~TG~ 190 (263)
T COG0434 177 LA----DAVIVTG-----SRTGS 190 (263)
T ss_pred CC----CEEEEec-----ccCCC
No 445
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=35.43 E-value=5.6e+02 Score=27.11 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=51.1
Q ss_pred CCceEEEeecC------cchhhhHHHHHH----hCCEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHc-C----
Q 008319 307 ADIHVIVKIES------ADSIPNLHSIIS----ASDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSM-Q---- 365 (570)
Q Consensus 307 ~~i~IiaKIEt------~~gv~NldeIl~----~sDgImIgrGDLg~eig~------~~v~~~qk~Ii~~c~~~-g---- 365 (570)
.+..+++.|-- .++.+.+.+.++ .+|+|-+- + .+|. .+-+....+++++.++. +
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN---~--scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVN---V--SSPNTPGLRDLQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEE---C--CCCCCCccccccCHHHHHHHHHHHHHHHhhccc
Confidence 35778888832 122333333222 26777763 1 1221 12344555777776654 2
Q ss_pred -CCEEEEccchhhhhcCCCcChHHHhHHHHHH-HhCccEEEecccc
Q 008319 366 -KPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGET 409 (570)
Q Consensus 366 -KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ET 409 (570)
+|+++ .-.+..+..++..++.++ ..|+|++.+++-|
T Consensus 202 ~~Pv~v--------Kl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 202 KVPLLV--------KIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred CCCeEE--------EeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 89987 234555555666776654 4699999988754
No 446
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.20 E-value=77 Score=33.19 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=45.7
Q ss_pred CChhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh-CCEEEEcC
Q 008319 265 ITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 265 lt~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDgImIgr 338 (570)
++-++.+++..+.+.|+|+|++.. -+.++++++.+.+ +.++.+.| -| -.+|+.++++. +|+|-+|.
T Consensus 193 vsv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~---~~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 193 VETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLV---PSAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EEeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhc---CCCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 344567778888899999999974 3566666666544 23344223 23 35689999988 99999974
No 447
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.19 E-value=87 Score=32.95 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=45.1
Q ss_pred hHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEcC
Q 008319 269 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIgr 338 (570)
..+++..+++.|+|.|.+=.. +++++++.-+.+. .... +|-.-|+ +|+.++++. +|.|.+|.
T Consensus 203 tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~---~~~~----leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVA---GRAI----TEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhC---CCce----EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 456677788999999999876 6777776666553 2222 5655554 589999988 99999874
No 448
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=35.04 E-value=1.9e+02 Score=30.60 Aligned_cols=63 Identities=19% Similarity=0.297 Sum_probs=41.6
Q ss_pred CceEEEecCCCCCCHH----HHHHHHHhCCcEEEEecCCCC-----hHHHHHHHHHHHHHHhhcCCCcEEEEeecC
Q 008319 100 KTKIVCTIGPSTSSRE----MIWKLAEEGMNVARLNMSHGD-----HASHQKTIDLVKEYNSQFEDKAVAIMLDTK 166 (570)
Q Consensus 100 ~tKIi~TiGPs~~~~e----~l~~li~~Gm~v~RiN~sHg~-----~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~ 166 (570)
+....+|+|....+++ ..+++.++|.+.+.+...|+. .+.-.+.++.+|+ ..+ ..+.+++|..
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~---~~g-~~~~l~vDaN 197 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVRE---AVG-PDVDLMVDAN 197 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHH---hhC-CCCEEEEECC
Confidence 4555677766542343 456678899999999999886 5555566666664 444 4566777753
No 449
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=34.84 E-value=1.4e+02 Score=29.79 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=58.5
Q ss_pred ccccCCEEEEeCC---eeEEEEEEEeCCeEEEEEEeCcEeccCcc--cccCCCccCCCCCChhhHHHhhhhhhcCCcEEE
Q 008319 211 DVEVGDILLVDGG---MMSLAVKSKTKDLVKCIVVDGGELKSRRH--LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYA 285 (570)
Q Consensus 211 ~v~~Gd~I~iDDG---~i~l~V~~~~~~~i~~~v~~gG~l~s~Kg--In~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~ 285 (570)
.+++||.|.+-|| ....++.+++.+.+.+++...-....... +.+ ...+|.- ++-..-|+.+.+.|++-|.
T Consensus 16 R~k~Gd~i~v~dg~g~~~~a~i~~i~~~~~~~~i~~~~~~~~~~~~~i~L---~~al~K~-~~~d~il~katELGv~~i~ 91 (225)
T PF04452_consen 16 RLKEGDSIEVFDGDGGEYRAEITEISKKSATLRILEELEIPPEPPPEITL---AQALPKG-DRMDWILQKATELGVSRII 91 (225)
T ss_dssp T--TT-EEEEEESSSEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEE---EEE--ST-THHHHHHHHHHHTT-SEEE
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECcCcEEEEEEeeeccCCCCCcceEEE---EEEEEcC-ccHHHHHHHHHhcCCCEEE
Confidence 4588998887653 45778888999999888874333322211 222 1223332 3444566889999999764
Q ss_pred ecCC-CCh---------hHHHHHHHH----HHhcCCCceEEEeecCcchhhhHHHHHHh---CCEEEEcCC
Q 008319 286 VSFV-KDA---------KVVHELKDY----LKSCNADIHVIVKIESADSIPNLHSIISA---SDGAMVARG 339 (570)
Q Consensus 286 ~SfV-~sa---------~dv~~vr~~----l~~~~~~i~IiaKIEt~~gv~NldeIl~~---sDgImIgrG 339 (570)
+=+. +|. .....++.. .++++.. .+.+|..+. +++++++. .+.++.-.+
T Consensus 92 p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~--~~P~i~~~~---~l~~~l~~~~~~~~~~~~~~ 157 (225)
T PF04452_consen 92 PVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRT--RLPEIEPPI---SLKELLEDIPDEDLLILDED 157 (225)
T ss_dssp EEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-S--S--EEEEEE---EHHHHHHHSSECSEEEE-TT
T ss_pred EEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCC--ccceeeccc---cHHHHhhccccCCEEEEccc
Confidence 4333 231 112223333 3444433 466676665 45555554 444555443
No 450
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.83 E-value=4e+02 Score=28.09 Aligned_cols=121 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 008319 295 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 373 (570)
Q Consensus 295 v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTq 373 (570)
...++.+.++. .+++.........++.+..-++. .+.||+. |-++|+++=...-+++++.|+..|.+|=.
T Consensus 63 ~~~~~~~A~~~--~VPValHLDH~~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gvsVEa--- 133 (284)
T PRK12857 63 SAMVRTAAEKA--SVPVALHLDHGTDFEQVMKCIRNGFTSVMID----GSKLPLEENIALTKKVVEIAHAVGVSVEA--- 133 (284)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHcCCCeEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEE---
Q ss_pred chhhhhcCCCcC-------------hHHHhHHHHHHHh-CccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 374 MLESMIDHPTPT-------------RAEVSDIAIAVRE-GADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 374 mLeSM~~~~~Pt-------------rAEv~Dv~nav~~-G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
.-.-.+. ..+..+...++.. |+|++-.+--|+.|.| |---...+.+|....
T Consensus 134 -----ElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~ 201 (284)
T PRK12857 134 -----ELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV 201 (284)
T ss_pred -----EeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
No 451
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=34.81 E-value=4.9e+02 Score=27.81 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=76.2
Q ss_pred CceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE-Eccch---hhhhcCC
Q 008319 308 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML---ESMIDHP 382 (570)
Q Consensus 308 ~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv-aTqmL---eSM~~~~ 382 (570)
.+++...+....-++.+.+-++. .+-||+. |-.+|+++=...-+++++.|+..|.+|=- -.++- +......
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMID----ASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 48899999998876666666655 7899996 34678887778889999999999988621 00000 0000000
Q ss_pred -CcChHHHhHHHHHHH-hCccEEEecccccCCCCH-----HHHHHHHHHHHHHh
Q 008319 383 -TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP-----LKAVKVMHTVALRT 429 (570)
Q Consensus 383 -~PtrAEv~Dv~nav~-~G~D~vmLs~ETA~G~yP-----~eaV~~m~~I~~~a 429 (570)
.-...+..+...++. -|+|++-.+--|+.|.|+ .--...|.+|..+.
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh
Confidence 000112345667775 499999999999999996 23444555554433
No 452
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.39 E-value=48 Score=36.79 Aligned_cols=120 Identities=18% Similarity=0.285 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCC-CCHHHHHHHHHHHHHHcCCCEEEE--cc
Q 008319 297 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSMQKPVIVA--TN 373 (570)
Q Consensus 297 ~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~-~~v~~~qk~Ii~~c~~~gKPviva--Tq 373 (570)
.+.+|+.+.|+++.++. +++-.+-.-. --|=+|.|+.-+.=|+ +-|+...-++++.|=..+|--|+| |-
T Consensus 243 ~IAEyFRDqG~~VLL~m-----DSlTRfA~Aq---REI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITafYTV 314 (441)
T COG1157 243 TIAEYFRDQGKRVLLIM-----DSLTRFAMAQ---REIGLAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAFYTV 314 (441)
T ss_pred HHHHHHHhCCCeEEEEe-----ecHHHHHHHH---HHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEEEEEE
Confidence 34567777777766554 2222221111 1223566777666666 478888889999988777776655 33
Q ss_pred chhhhhcCCCcChHHHhHHHHHHHhCccEEEeccc-ccCCCCHHHHHHHHHHHHHHhhcCC
Q 008319 374 MLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE-TAHGKFPLKAVKVMHTVALRTESSL 433 (570)
Q Consensus 374 mLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E-TA~G~yP~eaV~~m~~I~~~aE~~~ 433 (570)
+.|. ..+. .-+.|-++.++|| .++||-+ ...|+|| |+..+++|.+-+.+..
T Consensus 315 LveG----DD~~-dPiaD~~RsILDG--HIvLsR~LA~~ghyP--aIdvl~SiSRvm~~i~ 366 (441)
T COG1157 315 LVEG----DDMN-DPIADEVRSILDG--HIVLSRALAEAGHYP--AIDVLASISRVMPQIV 366 (441)
T ss_pred Eeec----CCCC-Cchhhhhhhhccc--eEEeeHhHHhcCCCC--CcchHHHHHHHhhhcC
Confidence 3332 2222 1278889999999 6999999 5599999 8888888888777554
No 453
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=34.37 E-value=1e+02 Score=30.39 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=37.3
Q ss_pred HHhhhhhhcCCcEEEecC--------CCChhHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh-CCEEEEcCC
Q 008319 271 EDIKFGVDNQVDFYAVSF--------VKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 339 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~Sf--------V~sa~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~-sDgImIgrG 339 (570)
++++.+.+.|+|+|.++- .....+...+++..+.. ++++++ -|-| .+++.++++. +||+++|+.
T Consensus 130 ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t---~~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 130 EEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINT---PEQAKKALELGAHAVVVGGA 204 (221)
T ss_pred HHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCC---HHHHHHHHHCCCCEEEEchH
Confidence 345677889999987631 11222334444443332 355555 3333 2566777766 999999965
No 454
>PLN02417 dihydrodipicolinate synthase
Probab=33.97 E-value=2.9e+02 Score=28.56 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=51.2
Q ss_pred HHHHHh-CCEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccE
Q 008319 325 HSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA 402 (570)
Q Consensus 325 deIl~~-sDgImIg-rGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~ 402 (570)
+..++. +|||++. ---=+..+..++-..+.+..++.+ .-..|++.- ....-|+.-+...-.|-..|+|+
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~g--------v~~~~t~~~i~~a~~a~~~Gada 99 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIGN--------TGSNSTREAIHATEQGFAVGMHA 99 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEEE--------CCCccHHHHHHHHHHHHHcCCCE
Confidence 334444 8999984 111111222223222222222222 223677753 22223333355566788999999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 403 VMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 403 vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+|+..=.-...-+-+.++....|+...
T Consensus 100 v~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 100 ALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred EEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 999755333222577888899988765
No 455
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.97 E-value=4.9e+02 Score=27.88 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHc-C-----CCEEEEccchhhhhcCCCcChHHHhHHHHHHH-hCccEEEecccc
Q 008319 350 VPLLQEDIIRRCRSM-Q-----KPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGET 409 (570)
Q Consensus 350 v~~~qk~Ii~~c~~~-g-----KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ET 409 (570)
.+..-.+|+++.++. + +||++ .-+|..+..|+.+++.++. .|+|++.+++-|
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~v--------Klsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLV--------KIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 344555777777764 4 89997 3445555556777777655 599999998765
No 456
>TIGR03425 urea_degr_2 urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.
Probab=33.90 E-value=1e+02 Score=31.67 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=35.1
Q ss_pred ceeecCCCEEEEEEecCCCCccEEEeccCCccc--------------ccccCCEEEEeCCeeEEEEEE
Q 008319 178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVN--------------DVEVGDILLVDGGMMSLAVKS 231 (570)
Q Consensus 178 ~i~l~~G~~v~lt~~~~~~~~~~i~v~~~~l~~--------------~v~~Gd~I~iDDG~i~l~V~~ 231 (570)
...|++||.++|+.-.+.-.-..+..|.++..| .+++|+.++-|.|+..++|++
T Consensus 14 s~~v~rGq~lri~d~~G~q~~d~~~~na~d~~Er~n~~dT~k~q~~~~l~~G~~L~Sd~gRpm~sIv~ 81 (233)
T TIGR03425 14 SKVLRRGTRLRLTDLEGGANVSLLLYNADAPLERYNMADTLKVQWTAYLTKGHVLLSDMGRVLASIVE 81 (233)
T ss_pred EEEECCCCEEEEEeCCCCeEeeeEEecCCCcccccCHHHHHHHhCCeeccCCCEeEeCCCcceEEEEc
Confidence 578999999999864332111222333332222 357899999999999998875
No 457
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=33.82 E-value=8.1e+02 Score=28.47 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=90.7
Q ss_pred CCChhhHHHhhhh-hhcCCcEEEe----------cCCCChhHHHHHHHHHHhcCCCceEEEe--ecCcchhhh-------
Q 008319 264 SITDKDWEDIKFG-VDNQVDFYAV----------SFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPN------- 323 (570)
Q Consensus 264 ~lt~kD~~dI~~~-~~~gvd~I~~----------SfV~sa~dv~~vr~~l~~~~~~i~IiaK--IEt~~gv~N------- 323 (570)
.++..|+..|..+ .+.|++.|=+ +|++ .+....++.+- +...++.+.+- -=+.-|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l~-~~~~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLRELK-KALPNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHHH-HhCCCCEEEEEEccccccccccCchhhHH
Confidence 5777887666544 3578887644 6773 33455555443 32344444443 334445533
Q ss_pred --HHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHH-HHHhC
Q 008319 324 --LHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREG 399 (570)
Q Consensus 324 --ldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G 399 (570)
++.-++. .|.+-|. .++.++ .-.+..++.++++|+.+-.+ -++..+|.-+.....+.+. +...|
T Consensus 95 ~~v~~a~~~Gvd~irif-------~~lnd~-~n~~~~i~~ak~~G~~v~~~----i~~t~~p~~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIF-------DALNDP-RNLQAAIQAAKKHGAHAQGT----ISYTTSPVHTLETYLDLAEELLEMG 162 (582)
T ss_pred HHHHHHHHCCCCEEEEE-------EecCcH-HHHHHHHHHHHHcCCEEEEE----EEeccCCCCCHHHHHHHHHHHHHcC
Confidence 1222222 5654432 122233 34667779999999977654 1444455445566666654 55679
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+|.+.|. +|+=.-.|.++-+.+..+..+.
T Consensus 163 ad~I~i~-Dt~G~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 163 VDSICIK-DMAGILTPKAAYELVSALKKRF 191 (582)
T ss_pred CCEEEEC-CCCCCcCHHHHHHHHHHHHHhC
Confidence 9999985 8998899999999988887554
No 458
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=33.60 E-value=1.9e+02 Score=29.30 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=60.5
Q ss_pred ccccCCEEEEeCC---eeEEEEEEEeCCeEEEEEEeCcEeccCcccccCCCccCCCCCChhhHHHhhhhhhcCCcEEEec
Q 008319 211 DVEVGDILLVDGG---MMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS 287 (570)
Q Consensus 211 ~v~~Gd~I~iDDG---~i~l~V~~~~~~~i~~~v~~gG~l~s~KgIn~p~~~~~lp~lt~kD~~dI~~~~~~gvd~I~~S 287 (570)
.+++||.|.+-|| ....++.+++.+.+.+++...-.........+ .....+|. .++-..-|+.+.+.|++-|..=
T Consensus 31 R~~~Gd~v~v~~g~g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~~~i-~l~~al~K-~~~~d~il~katELGv~~i~p~ 108 (240)
T TIGR00046 31 RLKKGDKLKLLDGDGFIYHCEIKKISKKFVKCELLEGESEKRELPLKI-HLAIVLIK-GKKMEFIIRKLTELGVSKIIPF 108 (240)
T ss_pred cCCCCCEEEEEeCCCCEEEEEEEEEcCCeEEEEEEecccCCCCCCcEE-EEEEeecC-CccHHHHHHHHHHcCCCEEEEE
Confidence 5689999976543 35678888899998888764322211111100 11123333 2344455678899999986443
Q ss_pred CCCCh---------hHHHHHHHHH----HhcCCCceEEEeecCcchhhhHHHHHHh
Q 008319 288 FVKDA---------KVVHELKDYL----KSCNADIHVIVKIESADSIPNLHSIISA 330 (570)
Q Consensus 288 fV~sa---------~dv~~vr~~l----~~~~~~i~IiaKIEt~~gv~NldeIl~~ 330 (570)
+.+.. .....+++.+ ++++. ..+.+|+.+.. ++++++.
T Consensus 109 ~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r--~~lP~i~~~~~---l~~~l~~ 159 (240)
T TIGR00046 109 NAERSVVKLDIEAIKKLERWQKIAIEAAEQSGR--NIVPEIKPPKN---LKEKCAE 159 (240)
T ss_pred EeccceeccCchHHHHHHHHHHHHHHHHHhcCC--CCCCEECCcCC---HHHHHhh
Confidence 32211 1123344433 33333 35677776654 4455543
No 459
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.56 E-value=5.4e+02 Score=29.19 Aligned_cols=155 Identities=9% Similarity=0.071 Sum_probs=87.0
Q ss_pred ceEEEeecCcchhhhHHH------HHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhh
Q 008319 309 IHVIVKIESADSIPNLHS------IISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES 377 (570)
Q Consensus 309 i~IiaKIEt~~gv~Nlde------Il~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeS 377 (570)
..|+.|.|..+-.-.+.. |... ..|++-+ +-| ..=.-+...|++.|.|+.+.
T Consensus 32 ~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~a------SaG-----Nha~~vA~aa~~~Gi~~~Iv------ 94 (499)
T TIGR01124 32 NRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAA------SAG-----NHAQGVAFSAARLGLKALIV------ 94 (499)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEE------CCC-----HHHHHHHHHHHHcCCCEEEE------
Confidence 368899998765533211 2111 2455443 222 12234667899999998764
Q ss_pred hhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcccCCCCChhHHHHHH
Q 008319 378 MIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFH 457 (570)
Q Consensus 378 M~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~ 457 (570)
.|..+... .+...-..|++.++- |...-++.+...+++.+- ...+..+ |.+ ......-..-
T Consensus 95 ---mP~~tp~~--Kv~~~r~~GA~Vvl~------g~~~d~a~~~a~~la~~~-g~~~i~p-~~~------~~~i~G~gti 155 (499)
T TIGR01124 95 ---MPETTPDI--KVDAVRGFGGEVVLH------GANFDDAKAKAIELSQEK-GLTFIHP-FDD------PLVIAGQGTL 155 (499)
T ss_pred ---ECCCCCHH--HHHHHHhCCCEEEEe------CcCHHHHHHHHHHHHHhc-CCEeeCC-CCC------hHHHHhhHHH
Confidence 22222222 344556779987764 233467777766665442 1111111 111 0111222333
Q ss_pred HHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 008319 458 STTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 499 (570)
Q Consensus 458 av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~ 499 (570)
+.++.++++ . .||+..-+|.++--++ .++|...||+|-+...
T Consensus 156 g~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~ 204 (499)
T TIGR01124 156 ALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS 204 (499)
T ss_pred HHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 466777775 4 7888888888776554 4579999999998654
No 460
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=33.49 E-value=1.4e+02 Score=29.73 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=43.2
Q ss_pred hhHHHhhhhhhcCCcEEEecCC-CChhHH--HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh--CCEEEE
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFV-KDAKVV--HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMV 336 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV-~sa~dv--~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~--sDgImI 336 (570)
.+.+|++.+.+.|+|++++-|. +|+..| .++++........+..++=.-+ +..+.+.++++. .|.+-+
T Consensus 11 ~~~eda~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~-~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 11 TTPEDAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVN-ASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred CcHHHHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeC-CCHHHHHHHHHhcCCCEEEE
Confidence 3567889999999999988874 566555 3455555544444444443322 345566666655 678877
No 461
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=33.40 E-value=5.4e+02 Score=30.72 Aligned_cols=131 Identities=16% Similarity=0.196 Sum_probs=64.7
Q ss_pred CCChhhHHHh--------hhhhhcCCcEEEecCC-------------CC------------hhHHHHHHHHHHh-cCCCc
Q 008319 264 SITDKDWEDI--------KFGVDNQVDFYAVSFV-------------KD------------AKVVHELKDYLKS-CNADI 309 (570)
Q Consensus 264 ~lt~kD~~dI--------~~~~~~gvd~I~~SfV-------------~s------------a~dv~~vr~~l~~-~~~~i 309 (570)
.+|..|++.+ +.+.+.|+|+|-+..- +. ...+.++-+.+.+ .+.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 6888887666 3456789999966322 11 1112222233333 35677
Q ss_pred eEEEeecCcc---h---hhhHHHHHHh-----CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH-cCCCEEEEccchhh
Q 008319 310 HVIVKIESAD---S---IPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLES 377 (570)
Q Consensus 310 ~IiaKIEt~~---g---v~NldeIl~~-----sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeS 377 (570)
.|..||-..+ + ++..-++++. +|.|-|..|--........-+..|....+..++ .++||+..
T Consensus 620 ~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~------ 693 (765)
T PRK08255 620 PMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAV------ 693 (765)
T ss_pred eeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEe------
Confidence 8888885322 1 1222233322 688888644322110000000122233333333 47898864
Q ss_pred hhcCCCcChHHHhHHHHHHHhC-ccEEEec
Q 008319 378 MIDHPTPTRAEVSDIAIAVREG-ADAVMLS 406 (570)
Q Consensus 378 M~~~~~PtrAEv~Dv~nav~~G-~D~vmLs 406 (570)
...-+.. +.-.++..| +|.|++.
T Consensus 694 ---G~i~~~~---~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 694 ---GAISEAD---HVNSIIAAGRADLCALA 717 (765)
T ss_pred ---CCCCCHH---HHHHHHHcCCcceeeEc
Confidence 2232333 234556655 9999984
No 462
>PLN00011 cysteine synthase
Probab=33.32 E-value=6e+02 Score=26.79 Aligned_cols=123 Identities=10% Similarity=0.025 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.|+.+. .|....-......-..|++.++...+ .+ .-+.+....++..+....+..
T Consensus 83 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~~~~~~~ 147 (323)
T PLN00011 83 GLACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKTPGGYIP 147 (323)
T ss_pred HHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhCCCeEEe
Confidence 4556899999999874 22222224455667799999876432 11 123344444444321111111
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC--C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~~ 499 (570)
.+ |.+. .++.--....+.++.++++ . .||+.+=+|.|.--++ .++|...|+++-+...
T Consensus 148 ~~-~~n~-----~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~ 212 (323)
T PLN00011 148 QQ-FENP-----ANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVES 212 (323)
T ss_pred cc-ccCC-----ccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCC
Confidence 11 1110 0111112234556666654 4 8999999997765444 5689999999999653
No 463
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.31 E-value=2e+02 Score=30.87 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.+.+.|.++.|-+-.+... -+|++++++-.|.|+.+-.++ .....+-..|.+.|+|.+.+
T Consensus 83 ~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~----------~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 83 IAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNF----------DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 445677777788877766554432 468899988899888874222 34455778899999998865
No 464
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=33.21 E-value=4.5e+02 Score=27.68 Aligned_cols=131 Identities=15% Similarity=0.264 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE--
Q 008319 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-- 368 (570)
Q Consensus 292 a~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPv-- 368 (570)
.+.+..+-..+.+ ...++|...+.....++.+.+=++. .+.||+. +-.+|+++=...-+++++.|+..|.+|
T Consensus 57 ~~~~~~~~~~~a~-~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D----gS~lp~eeNi~~T~~vv~~Ah~~gv~VEa 131 (282)
T TIGR01858 57 TEYIVALCSAAST-TYNMPLALHLDHHESLDDIRQKVHAGVRSAMID----GSHFPFAQNVKLVKEVVDFCHRQDCSVEA 131 (282)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHcCCCEEeec----CCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Q ss_pred ------EEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCC---HHHHHHHHHHHHHHh
Q 008319 369 ------IVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 429 (570)
Q Consensus 369 ------ivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~y---P~eaV~~m~~I~~~a 429 (570)
+.-..+.........-+..|..+-+. .-|+|++-.+--|+.|.| |.--...|.+|....
T Consensus 132 ElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~--~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 132 ELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE--ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV 199 (282)
T ss_pred EEEecCCccCCCccccchhccCCHHHHHHHHH--HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh
No 465
>PRK02991 D-serine dehydratase; Provisional
Probab=33.19 E-value=6.3e+02 Score=28.23 Aligned_cols=120 Identities=11% Similarity=-0.078 Sum_probs=70.4
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 435 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~~~~ 435 (570)
-+...|+..|.++.+. .|..+--..+...-..|++.+..- ..--++++...+++.+-...++.
T Consensus 171 alA~aA~~~G~~~tIv-----------vP~~a~~~K~~~ir~~GAeVi~~~------~~~~~a~~~A~~la~~~~~~~~~ 233 (441)
T PRK02991 171 SIGIMSAALGFKVTVH-----------MSADARQWKKDKLRSHGVTVVEYE------GDYGVAVEEGRKAAESDPNCYFI 233 (441)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHhcCCeEeC
Confidence 4566899999999875 343444445667778999887642 33457887777776542112211
Q ss_pred CCCCCCcccCCCCChhHHHHHHHHHHHhhcC---------C--cEEEEcCChHHHHHHHhc-----CCCCeEEEEeCCHH
Q 008319 436 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN---------T--PIIVFTRTGSMAVILSHY-----RPSSTIFAFTNQER 499 (570)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---------a--~Iiv~T~sG~tA~~ls~~-----RP~~pIiavt~~~~ 499 (570)
.+ +.+ ....+--.--+.++.++++ . .|+|..-.|.++--++++ +|.+.||+|-+...
T Consensus 234 ~~-~~~------~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga 306 (441)
T PRK02991 234 DD-ENS------RTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 306 (441)
T ss_pred CC-CCc------hhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 11 110 0121212222345555543 1 477888888776655533 68899999998654
No 466
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=33.17 E-value=1.2e+02 Score=25.80 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCC-cEEEEcCC---------hHHHHHHHhcCCCCeEEEE
Q 008319 455 AFHSTTMANTLNT-PIIVFTRT---------GSMAVILSHYRPSSTIFAF 494 (570)
Q Consensus 455 a~~av~~a~~~~a-~Iiv~T~s---------G~tA~~ls~~RP~~pIiav 494 (570)
+......+++.++ .||+-++. |+++..+.+.-| |||+.+
T Consensus 91 ~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 91 ADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp HHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred chhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 3444678888999 77776665 789999999776 999875
No 467
>PRK00568 carbon storage regulator; Provisional
Probab=33.10 E-value=93 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=24.6
Q ss_pred ccCCEEEEeCCeeEEEEEEEeCCeEEEEEE
Q 008319 213 EVGDILLVDGGMMSLAVKSKTKDLVKCIVV 242 (570)
Q Consensus 213 ~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~ 242 (570)
++|+.|.|+| .|..+|.++.++.|..-+.
T Consensus 7 K~gEsI~Igd-~I~I~Vl~i~g~~VrlGI~ 35 (76)
T PRK00568 7 KVNEGIVIDD-NIHIKVISIDRGSVRLGFE 35 (76)
T ss_pred eCCCeEEeCC-CeEEEEEEEcCCEEEEEEE
Confidence 7899999998 7999999999998765433
No 468
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.06 E-value=5e+02 Score=25.78 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=64.5
Q ss_pred hhHHHhhhhhhcCCcEEEecCC--CChhHHHHHHHHHHhcCCCceEEEeecCc---------------chhhhHHHHHHh
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVKIESA---------------DSIPNLHSIISA 330 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV--~sa~dv~~vr~~l~~~~~~i~IiaKIEt~---------------~gv~NldeIl~~ 330 (570)
++.+|++.+++.|+|.|.+.-. ++++.+ .+..+..+.+ .+++-|... .-++-...+...
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~---~~i~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIV---RELSEEFGSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHH---HHHHHHhCCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 4567788888899999877632 233333 4444333332 133322211 112222222222
Q ss_pred -CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccc
Q 008319 331 -SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 409 (570)
Q Consensus 331 -sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 409 (570)
+|.|++---+-.-...-..+ . .+-+.++....|++.+ ...-+.. |+..+...|+|++++..--
T Consensus 162 G~~~i~~~~~~~~g~~~g~~~-~---~i~~i~~~~~iPvia~---------GGI~~~~---di~~~~~~Ga~gv~vgsa~ 225 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEGVNT-E---PVKELVDSVDIPVIAS---------GGVTTLD---DLRALKEAGAAGVVVGSAL 225 (241)
T ss_pred CCCEEEEEeecCCCCcCCCCH-H---HHHHHHHhCCCCEEEe---------CCCCCHH---HHHHHHHcCCCEEEEEHHH
Confidence 67777632111111111222 1 2333344557999975 3333333 4545677899999997555
Q ss_pred cCCCCHH
Q 008319 410 AHGKFPL 416 (570)
Q Consensus 410 A~G~yP~ 416 (570)
-.|.+++
T Consensus 226 ~~~~~~~ 232 (241)
T PRK13585 226 YKGKFTL 232 (241)
T ss_pred hcCCcCH
Confidence 5555553
No 469
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=32.92 E-value=1.4e+02 Score=28.33 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEcCChHHHHHHHhcCCCC-eEEEEeCCHHHHHHhccccCcEEEEe
Q 008319 451 GDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSS-TIFAFTNQERIKQRLVLYQGVMPIYM 515 (570)
Q Consensus 451 ~~~ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~RP~~-pIiavt~~~~taRrL~L~rGV~Pil~ 515 (570)
...||..|+++-..-. .+|=.+|.|+..++++=|.- ++-.+|++-.++..|.-..++.-++.
T Consensus 6 K~~IA~~A~~~I~~~~---~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~ 68 (161)
T PF00455_consen 6 KRAIARKAASLIEDGD---TIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILL 68 (161)
T ss_pred HHHHHHHHHHhCCCCC---EEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEe
Confidence 4567766665544322 56667888888888887766 88889999888888887776666654
No 470
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=32.85 E-value=3.2e+02 Score=27.74 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=67.1
Q ss_pred EEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHH---------
Q 008319 284 YAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQ--------- 354 (570)
Q Consensus 284 I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~q--------- 354 (570)
|.+=-..+.++...+.+.|-+.|-+ .|=.-.-|+.+.+-|.++.+....+.||-|=. +..+.+..+.
T Consensus 16 I~Vlr~~~~e~a~~~a~Ali~gGi~-~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTV---L~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 16 VPVIRGDDVEEALPLAKALIEGGIP-AIEITLRTPAALEAIRALAKEFPEALIGAGTV---LNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-eEEEecCCCCHHHHHHHHHHhCcccEEccccc---cCHHHHHHHHHcCCCEEEC
Confidence 3344446677766666666554432 34445667788888888887777777775532 3333333333
Q ss_pred ----HHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEe
Q 008319 355 ----EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 405 (570)
Q Consensus 355 ----k~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 405 (570)
.++++.|+.+|.|++ |--+-.+++..|...|++.+=+
T Consensus 92 P~~~~ev~~~a~~~~ip~~--------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 92 PGLNPEVAKAANRYGIPYI--------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCCHHHHHHHHhCCCccc--------------CCCCCHHHHHHHHHcChhheee
Confidence 689999999999987 2223334577889999988755
No 471
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=32.82 E-value=5.7e+02 Score=26.35 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCceEEEee--cCcchhhhHHHHHHh--CCEEEEcCC-----CcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEEccchh
Q 008319 307 ADIHVIVKI--ESADSIPNLHSIISA--SDGAMVARG-----DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLE 376 (570)
Q Consensus 307 ~~i~IiaKI--Et~~gv~NldeIl~~--sDgImIgrG-----DLg~eig~~~v~~~qk~Ii~~c~~~-gKPvivaTqmLe 376 (570)
.+.++++.| .+.+...+.-+.++. +|+|=+-=+ ..+.+++ .-+....++++.++++ ++|+++=
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vK----- 160 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVK----- 160 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEE-----
Confidence 356788887 444444444444433 688866310 0011111 2245667888888887 8999862
Q ss_pred hhhcCCCcChHHHhHHHH-HHHhCccEEEeccc
Q 008319 377 SMIDHPTPTRAEVSDIAI-AVREGADAVMLSGE 408 (570)
Q Consensus 377 SM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~E 408 (570)
- .|+..|..+++. +...|+|++.+.+=
T Consensus 161 ---l--~~~~~~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 161 ---L--TPNVTDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred ---e--CCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 1 244446667665 55689999988643
No 472
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=32.81 E-value=1.2e+02 Score=33.39 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=43.6
Q ss_pred HHHhhhhhhcCCcEEEecCCC---------ChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEE
Q 008319 270 WEDIKFGVDNQVDFYAVSFVK---------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMV 336 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~---------sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImI 336 (570)
.+|.+.+.+.|+|+|.+|-.. +.+-+.++++.+ +.++.||+ --||.|=.+|+++ +|++++
T Consensus 264 ~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~---~~~~~vi~----dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV---GDRLTVLF----DSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh---cCCCeEEE----eCCcCcHHHHHHHHHcCCCEEEE
Confidence 345667778999999988541 222233344433 45677776 2578888888877 899999
Q ss_pred cCCCc
Q 008319 337 ARGDL 341 (570)
Q Consensus 337 grGDL 341 (570)
||.=|
T Consensus 337 Gr~~l 341 (383)
T cd03332 337 GRPYA 341 (383)
T ss_pred cHHHH
Confidence 98665
No 473
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.72 E-value=5.4e+02 Score=26.12 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHH
Q 008319 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 422 (570)
Q Consensus 352 ~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m 422 (570)
.+.+..++.++++|++|++-|+ ++. --...+...++..|+|++.- .||-.+++++
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~--~~~-------~n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD--EPV-------NDNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC--CCC-------CCCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 3578899999999999998762 111 11133455678889998765 6887776654
No 474
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=32.64 E-value=6.3e+02 Score=27.24 Aligned_cols=134 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred CccCCCCCChhhHHHhhhhhh-cCCcEEEecCCC--------ChhHHHHHHHHHHhcCC--CceEEEeec-CcchhhhHH
Q 008319 258 KSANLPSITDKDWEDIKFGVD-NQVDFYAVSFVK--------DAKVVHELKDYLKSCNA--DIHVIVKIE-SADSIPNLH 325 (570)
Q Consensus 258 ~~~~lp~lt~kD~~dI~~~~~-~gvd~I~~SfV~--------sa~dv~~vr~~l~~~~~--~i~IiaKIE-t~~gv~Nld 325 (570)
.++..+.+..++.+++..+++ .++|.+.+-.-. ...+...+.+.++..-. +++|++|+= +....+...
T Consensus 125 aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~ 204 (352)
T PRK05437 125 ANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAK 204 (352)
T ss_pred eecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHH
Q ss_pred HHHHh-CCEEEE----c---------CC------CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcC
Q 008319 326 SIISA-SDGAMV----A---------RG------DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPT 385 (570)
Q Consensus 326 eIl~~-sDgImI----g---------rG------DLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~Pt 385 (570)
.+.+. +|+|.| | |+ +.-.+.+++ ......++.+.. .+.|+|...-+-...
T Consensus 205 ~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~p-t~~~l~~i~~~~--~~ipvia~GGI~~~~------- 274 (352)
T PRK05437 205 RLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIP-TAQSLLEARSLL--PDLPIIASGGIRNGL------- 274 (352)
T ss_pred HHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCC-HHHHHHHHHHhc--CCCeEEEECCCCCHH-------
Q ss_pred hHHHhHHHHHHHhCccEEEec
Q 008319 386 RAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 386 rAEv~Dv~nav~~G~D~vmLs 406 (570)
|+..++..|+|++++.
T Consensus 275 -----dv~k~l~~GAd~v~ig 290 (352)
T PRK05437 275 -----DIAKALALGADAVGMA 290 (352)
T ss_pred -----HHHHHHHcCCCEEEEh
No 475
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=32.64 E-value=42 Score=31.70 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHH
Q 008319 354 QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 395 (570)
Q Consensus 354 qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 395 (570)
..++++...+.|+|+++||. .+|.|.- |..++..
T Consensus 65 ~~evi~~I~~~G~PviVAtD------V~p~P~~--V~Kia~~ 98 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATD------VSPPPET--VKKIARS 98 (138)
T ss_pred HHHHHHHHHHcCCEEEEEec------CCCCcHH--HHHHHHH
Confidence 45788888999999999986 4555654 3344433
No 476
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.44 E-value=1.7e+02 Score=25.22 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCCceEE---EeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE
Q 008319 293 KVVHELKDYLKSCNADIHVI---VKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 369 (570)
Q Consensus 293 ~dv~~vr~~l~~~~~~i~Ii---aKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvi 369 (570)
.....+++.+++.|...... -+.+.. -.+|++-+.-+|.|++--+- ++ -.+...+-+.|++.|+|++
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~~--~~~l~~~i~~aD~VIv~t~~----vs----H~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEKK--ASRLPSKIKKADLVIVFTDY----VS----HNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCccc--hhHHHHhcCCCCEEEEEeCC----cC----hHHHHHHHHHHHHcCCcEE
Confidence 34567888888888776666 222222 22578888889999884221 22 1456788889999999999
Q ss_pred EE
Q 008319 370 VA 371 (570)
Q Consensus 370 va 371 (570)
.+
T Consensus 80 ~~ 81 (97)
T PF10087_consen 80 YS 81 (97)
T ss_pred EE
Confidence 75
No 477
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.41 E-value=5.9e+02 Score=26.42 Aligned_cols=141 Identities=10% Similarity=0.114 Sum_probs=83.8
Q ss_pred hHHHhhhhhhcCCcEEEec-------CCCChhHHHHHHHHHHhcCCCceEEEeecCcch------------hhhHHHHHH
Q 008319 269 DWEDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 329 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~g------------v~NldeIl~ 329 (570)
+.++...|.+.|+|=|=+- ...|..-+..+++++ ++++.++|=-..| .+.+....+
T Consensus 10 s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 10 SMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERV-----TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-----CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566777778888877441 224555555555433 5788888833322 223333333
Q ss_pred h-CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEeccc
Q 008319 330 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408 (570)
Q Consensus 330 ~-sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 408 (570)
. +||+++|- |.-+-.+ +. ...+++++.| .+.|+.+- |..--.+... ..+-..+..|+|.|+-||-
T Consensus 85 ~GadGvV~G~--L~~dg~v-D~-~~~~~Li~~a--~~~~vTFH------RAfD~~~d~~--~al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 85 LGFPGLVTGV--LDVDGHV-DM-PRMRKIMAAA--GPLAVTFH------RAFDMCANPL--NALKQLADLGVARILTSGQ 150 (248)
T ss_pred cCCCEEEEee--ECCCCCc-CH-HHHHHHHHHh--cCCceEEe------chhhccCCHH--HHHHHHHHcCCCEEECCCC
Confidence 3 89999973 2211111 22 3456777777 47887652 3332333332 3355677789999999877
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhc
Q 008319 409 TAHGKFPLKAVKVMHTVALRTES 431 (570)
Q Consensus 409 TA~G~yP~eaV~~m~~I~~~aE~ 431 (570)
... ..+-+..+.++...+..
T Consensus 151 ~~~---a~~g~~~L~~lv~~a~~ 170 (248)
T PRK11572 151 QQD---AEQGLSLIMELIAASDG 170 (248)
T ss_pred CCC---HHHHHHHHHHHHHhcCC
Confidence 643 77888888888877653
No 478
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=32.40 E-value=91 Score=31.18 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=43.3
Q ss_pred HHHhhhhhhcCCcEEEecCCCChhH--------HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEc
Q 008319 270 WEDIKFGVDNQVDFYAVSFVKDAKV--------VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 337 (570)
Q Consensus 270 ~~dI~~~~~~gvd~I~~SfV~sa~d--------v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIg 337 (570)
.+....+.+.|++| ..||+.+-+| +.++.++++..+.+.+|++ .++.|..+|.++ +|.+=+.
T Consensus 112 ~~Qa~~Aa~AGA~y-vsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-----As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 112 AAQALLAAKAGATY-VSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-----ASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHHHHcCCCE-EEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-----cccCCHHHHHHHHHcCCCEEEeC
Confidence 34456677889999 6788888544 3466677777666777776 588888888864 5666654
No 479
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.38 E-value=78 Score=35.95 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=41.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 008319 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (570)
Q Consensus 99 r~tKIi~TiGPs~~~~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~ 149 (570)
.+-.+.+.+|+. ...+..+.|+++|+|+.=+.-+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 456677888885 56789999999999999999999988777777777775
No 480
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=32.13 E-value=6.5e+02 Score=26.84 Aligned_cols=205 Identities=13% Similarity=0.151 Sum_probs=109.3
Q ss_pred ceEEEeecCcchhhhHHH-----HHHh--CCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcC
Q 008319 309 IHVIVKIESADSIPNLHS-----IISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH 381 (570)
Q Consensus 309 i~IiaKIEt~~gv~Nlde-----Il~~--sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~ 381 (570)
..|++|+|...---.+.+ |+.. ..|.+ -||+--+|-.--..-. -+...|+..|-++++.
T Consensus 26 ~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l-~pG~tIVE~TSGNTGI---~LA~vaa~~Gy~~iiv---------- 91 (300)
T COG0031 26 VEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLL-KPGGTIVEATSGNTGI---ALAMVAAAKGYRLIIV---------- 91 (300)
T ss_pred ceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCC-CCCCEEEEcCCChHHH---HHHHHHHHcCCcEEEE----------
Confidence 568888886543333322 2222 23332 3444333321112111 2345688999999874
Q ss_pred CCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhc-CCCCCCCCCCcccCCCCChhHHHHHHHHH
Q 008319 382 PTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES-SLPVSITPPTQFSAHKSHMGDMFAFHSTT 460 (570)
Q Consensus 382 ~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~-~~~~~~~~~~~~~~~~~~~~~~ia~~av~ 460 (570)
.|...........-..|+..++... .+.|-..+++...+++.+... .++..|+.... +...+. --.+-+
T Consensus 92 -mP~~~S~er~~~l~a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~Npa-----N~~aH~-~tT~~E 161 (300)
T COG0031 92 -MPETMSQERRKLLRALGAEVILTPG---APGNMKGAIERAKELAAEIPGYAVWLNQFENPA-----NPEAHY-ETTGPE 161 (300)
T ss_pred -eCCCCCHHHHHHHHHcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCceEchhhcCCCc-----cHHHHH-hhhHHH
Confidence 2333334445566788999999875 344455677777777666644 33433332111 111111 112344
Q ss_pred HHhhcC--C-cEEEEcCChHHH----HHHHhcCCCCeEEEEeCCHHHHHH----hc----cccCcEEEEecC-------C
Q 008319 461 MANTLN--T-PIIVFTRTGSMA----VILSHYRPSSTIFAFTNQERIKQR----LV----LYQGVMPIYMQF-------S 518 (570)
Q Consensus 461 ~a~~~~--a-~Iiv~T~sG~tA----~~ls~~RP~~pIiavt~~~~taRr----L~----L~rGV~Pil~~~-------~ 518 (570)
+-++.+ . ++|.-.-||-|. +.|-...|.+.|+++=|.....-. =+ +-.|..|..+.. .
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~ 241 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIR 241 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEE
Confidence 444444 4 677766677664 455556899999999998644332 11 223344422211 1
Q ss_pred CCHHHHHHHHHHHHHHcCC
Q 008319 519 DDVEETFSRAIKLLMDKNL 537 (570)
Q Consensus 519 ~d~d~~i~~al~~lke~Gl 537 (570)
.+.++.+..+.+.+.+.|+
T Consensus 242 V~d~~A~~~~r~La~~eGi 260 (300)
T COG0031 242 VSDEEAIATARRLAREEGL 260 (300)
T ss_pred ECHHHHHHHHHHHHHHhCe
Confidence 2456667777777777776
No 481
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=31.99 E-value=3.7e+02 Score=28.10 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcCCcEEEEcCChHHHHHHHhc--CCCCeEEEEeCCH---HHHHHhccccCcEEEEecCCCCHHHHHHHH
Q 008319 454 FAFHSTTMANTLNTPIIVFTRTGSMAVILSHY--RPSSTIFAFTNQE---RIKQRLVLYQGVMPIYMQFSDDVEETFSRA 528 (570)
Q Consensus 454 ia~~av~~a~~~~a~Iiv~T~sG~tA~~ls~~--RP~~pIiavt~~~---~taRrL~L~rGV~Pil~~~~~d~d~~i~~a 528 (570)
.+..++..+.+.+...|+...||++++.+|.+ +...|.+.+.|.. ..-..+....|..-+.++. +.++..+.+
T Consensus 58 ~a~~~l~~a~~~g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~ 135 (328)
T TIGR00260 58 GMAVALTKALELGNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLV 135 (328)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHH
Confidence 34555555555566334445699999888755 3557888888875 2222233358888887764 455555555
Q ss_pred HHHHHHc
Q 008319 529 IKLLMDK 535 (570)
Q Consensus 529 l~~lke~ 535 (570)
.+..++.
T Consensus 136 ~~~~~~~ 142 (328)
T TIGR00260 136 KQLFGDK 142 (328)
T ss_pred HHHHhhc
Confidence 5555543
No 482
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.78 E-value=4.8e+02 Score=26.38 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=65.9
Q ss_pred HHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHH-hCCEEEE-cC-CCcccCCCC
Q 008319 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAMV-AR-GDLGAELPI 347 (570)
Q Consensus 271 ~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~-~sDgImI-gr-GDLg~eig~ 347 (570)
+-++.+.+.|+|++.++-.. .++...+.+.+++.|-+.-++..=.| -.+.++.|++ ..|.|.+ ++ |=-|..-++
T Consensus 95 ~fi~~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLP-PEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHCCCcEEEECCCC-HHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 34566678899999995432 46777788888887766555444444 4668888988 4554433 32 223332222
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEec
Q 008319 348 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 406 (570)
Q Consensus 348 ~~v~~~qk~Ii~~c~~-~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 406 (570)
. +... ..++..++ ..+|+.+- ...=+.+ ++..+... +|++...
T Consensus 172 ~--~~~~-~~i~~lr~~~~~pI~vg---------gGI~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 P--DDLK-ELIKRIRKYTDLPIAVG---------FGISTPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred C--hhHH-HHHHHHHhcCCCcEEEE---------ccCCCHH---HHHHHHcc-CCEEEEC
Confidence 1 2222 33333333 47888864 2222222 34445555 8887774
No 483
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=31.78 E-value=72 Score=34.83 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=43.1
Q ss_pred hHHHhhhhhhcCCcEEEecC-------------CCChh---HHHHH-HHHHHhcC-CCceEEEeecCcchhhhHHHHHHh
Q 008319 269 DWEDIKFGVDNQVDFYAVSF-------------VKDAK---VVHEL-KDYLKSCN-ADIHVIVKIESADSIPNLHSIISA 330 (570)
Q Consensus 269 D~~dI~~~~~~gvd~I~~Sf-------------V~sa~---dv~~v-r~~l~~~~-~~i~IiaKIEt~~gv~NldeIl~~ 330 (570)
+.++...+++.|+|+|...- +..+. |+.+. ++|+++.+ ..+.|||- -|+.+-.+|+++
T Consensus 198 t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAd----GGI~tg~di~kA 273 (369)
T TIGR01304 198 DYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIAD----GGIETSGDLVKA 273 (369)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEe----CCCCCHHHHHHH
Confidence 34555666678999987431 12222 23222 45777776 45888882 577788888877
Q ss_pred ----CCEEEEcC
Q 008319 331 ----SDGAMVAR 338 (570)
Q Consensus 331 ----sDgImIgr 338 (570)
+|++|+|+
T Consensus 274 lAlGAdaV~iGt 285 (369)
T TIGR01304 274 IACGADAVVLGS 285 (369)
T ss_pred HHcCCCEeeeHH
Confidence 89999985
No 484
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=31.74 E-value=89 Score=32.30 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEEEEeecCCCeee
Q 008319 115 EMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVR 171 (570)
Q Consensus 115 e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~I~~Dl~GpkiR 171 (570)
+..++|+++|+++.=+|+.-...+++.++...++.+.+..+ +.|.+|+.-|++-
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~---~plsIDT~~~~v~ 82 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD---VPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC---CCEEEeCCCHHHH
Confidence 45677899999999999986666778888888888765543 5589998887664
No 485
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=31.67 E-value=82 Score=32.84 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=41.7
Q ss_pred ceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 309 IHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 309 i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
.++|+ ++.+..+|+.+.+|+++|-=|=|. ++-...++..++.+++.|+|+++
T Consensus 39 SP~Ma-----~~~eE~~e~~kia~AL~INIGTL~-----~~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 39 SPVMA-----DAPEEVEEFAKIADALLINIGTLS-----AERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred Cchhc-----cCHHHHHHHHHhccceEEeeccCC-----hHHHHHHHHHHHHHHhcCCCEEe
Confidence 45665 567788999999999999766554 34567888999999999999985
No 486
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.66 E-value=5.5e+02 Score=25.87 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=75.3
Q ss_pred HHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHh--hcCC---CC
Q 008319 361 CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRT--ESSL---PV 435 (570)
Q Consensus 361 c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a--E~~~---~~ 435 (570)
++..+.|+++ ....-+.. |+..++..|+|.+++..+. -+.| ..+.++.... |+.. ..
T Consensus 70 ~~~~~ipv~~---------~GGi~s~~---~~~~~l~~Ga~~Viigt~~--l~~p----~~~~ei~~~~g~~~iv~slD~ 131 (253)
T PRK02083 70 AEQVFIPLTV---------GGGIRSVE---DARRLLRAGADKVSINSAA--VANP----ELISEAADRFGSQCIVVAIDA 131 (253)
T ss_pred HHhCCCCEEe---------eCCCCCHH---HHHHHHHcCCCEEEEChhH--hhCc----HHHHHHHHHcCCCCEEEEEEe
Confidence 3445789886 34555544 4555666899999997443 2345 3444455443 2211 11
Q ss_pred CC--CCCC--cccCCCCChhHHHHHHHHHHHhhcCC-cEEE--EcCCh-------HHHHHHHhcCCCCeEEEEe--CC-H
Q 008319 436 SI--TPPT--QFSAHKSHMGDMFAFHSTTMANTLNT-PIIV--FTRTG-------SMAVILSHYRPSSTIFAFT--NQ-E 498 (570)
Q Consensus 436 ~~--~~~~--~~~~~~~~~~~~ia~~av~~a~~~~a-~Iiv--~T~sG-------~tA~~ls~~RP~~pIiavt--~~-~ 498 (570)
+. .... ..........+.-....+..+++.++ .|++ .++.| .....+.+ ....||||-- .+ +
T Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~-~~~ipvia~GGv~s~~ 210 (253)
T PRK02083 132 KRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD-AVNVPVIASGGAGNLE 210 (253)
T ss_pred ccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh-hCCCCEEEECCCCCHH
Confidence 10 0000 00000000001111222345566788 6766 33445 22333333 3468999976 33 4
Q ss_pred HHHHHhccccCcEEEEecCC-CCHHHHHHHHHHHHHHcCC
Q 008319 499 RIKQRLVLYQGVMPIYMQFS-DDVEETFSRAIKLLMDKNL 537 (570)
Q Consensus 499 ~taRrL~L~rGV~Pil~~~~-~d~d~~i~~al~~lke~Gl 537 (570)
++.+.+.. -|+..+.+... .+..-.+..+++.+++.|+
T Consensus 211 d~~~~~~~-~G~~gvivg~al~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK02083 211 HFVEAFTE-GGADAALAASIFHFGEITIGELKAYLAEQGI 249 (253)
T ss_pred HHHHHHHh-CCccEEeEhHHHHcCCCCHHHHHHHHHHCCC
Confidence 44443333 57777665322 1112234556677777775
No 487
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=31.61 E-value=5e+02 Score=27.81 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=48.2
Q ss_pred hhhhhhcCCcEEEecCCCChhH------------------HHHHHHHHHhcCCCceEEEeecCcchhhhHHH----HHHh
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKV------------------VHELKDYLKSCNADIHVIVKIESADSIPNLHS----IISA 330 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~d------------------v~~vr~~l~~~~~~i~IiaKIEt~~gv~Nlde----Il~~ 330 (570)
++...+.|+|+|.+=-+.+-+. +..+.+++.+.+.+..||.+ .|.+=++. +...
T Consensus 153 l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~N----nG~eil~~~~g~~~~~ 228 (315)
T TIGR01370 153 LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQ----NGEELLRDDHGGLAAT 228 (315)
T ss_pred HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEec----Cchhhhhccccchhhh
Confidence 4556789999998865544322 22333344666777666642 34433333 4455
Q ss_pred CCEEEEcC---CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 008319 331 SDGAMVAR---GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 370 (570)
Q Consensus 331 sDgImIgr---GDLg~eig~~~v~~~qk~Ii~~c~~~gKPviv 370 (570)
+|||..-- .+.+ ..+ ++-....-.-+.++++.||||++
T Consensus 229 idgV~~Eslf~~~~~-~~~-e~dr~~~l~~L~~~~~~G~~Vl~ 269 (315)
T TIGR01370 229 VSGWAVEELFYYAAN-RPT-EAERQRRLLALYRLWQQGKFVLT 269 (315)
T ss_pred ceEEEecceEEcCCC-CCC-HHHHHHHHHHHHHHHHCCCcEEE
Confidence 67665531 0111 111 11122222345667778999997
No 488
>PRK08328 hypothetical protein; Provisional
Probab=31.59 E-value=2.5e+02 Score=28.25 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 298 LKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 298 vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
+++.+.+.|.++.|-+--+.. .-+|++++++-.|.|+-+-.+ +.....+-+.|++.|+|++.+
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 455666778888777644433 346888888888988875222 234556677899999999864
No 489
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=31.47 E-value=58 Score=28.96 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=31.8
Q ss_pred CCcccccccCCEEEEeCCeeEEEEEEEeCCeEEEEEEeCcEec
Q 008319 206 DDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELK 248 (570)
Q Consensus 206 ~~l~~~v~~Gd~I~iDDG~i~l~V~~~~~~~i~~~v~~gG~l~ 248 (570)
.++.+.+++||+|..-.| |.-+|++++++.++.++-.+..++
T Consensus 38 ~~ml~sL~kGD~VvT~gG-i~G~V~~v~d~~v~I~l~~~~~i~ 79 (97)
T COG1862 38 QELLNSLKKGDEVVTIGG-IVGTVTKVGDDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHhccCCCEEEEcCC-eEEEEEEEecCcEEEEECCCeEEE
Confidence 467889999999998876 456788998888666665555554
No 490
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=31.38 E-value=3.5e+02 Score=28.21 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=53.7
Q ss_pred HHHHHHh--CCEEEEcCCCc--ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHHHhHHHHHHHhC
Q 008319 324 LHSIISA--SDGAMVARGDL--GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG 399 (570)
Q Consensus 324 ldeIl~~--sDgImIgrGDL--g~eig~~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G 399 (570)
++..++. +|||+++ |=- +..+..++-..+.+..++.+. ...||++- .....|+.-+.-.-.|...|
T Consensus 27 i~~~i~~G~v~gi~~~-GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~g--------v~~~~t~~~i~la~~a~~~G 96 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVG-GSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQ--------VGSVNLKEAVELGKYATELG 96 (290)
T ss_pred HHHHHhCCCcCEEEEC-CcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEe--------cCCCCHHHHHHHHHHHHHhC
Confidence 3444433 7898885 111 122333443334444444432 23677753 11223333355566778999
Q ss_pred ccEEEecccccCCCCHHHHHHHHHHHHHHh
Q 008319 400 ADAVMLSGETAHGKFPLKAVKVMHTVALRT 429 (570)
Q Consensus 400 ~D~vmLs~ETA~G~yP~eaV~~m~~I~~~a 429 (570)
+|++|+..=.-...-+-+.+.....++..+
T Consensus 97 ad~v~v~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 97 YDCLSAVTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred CCEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence 999999643333334578888899998765
No 491
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=31.31 E-value=1e+02 Score=32.65 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=38.3
Q ss_pred hhhhhcCCcEEEecCCCCh--------hHHHHHHHHHHhcCCCceEEE--eecCcchhhhHHHHHHh--CCEEEEcCCCc
Q 008319 274 KFGVDNQVDFYAVSFVKDA--------KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA--SDGAMVARGDL 341 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa--------~dv~~vr~~l~~~~~~i~Iia--KIEt~~gv~NldeIl~~--sDgImIgrGDL 341 (570)
+...+.|+|+|.+.- ++. .+...+++.-+. .+++||+ -|.|+ +.++++++. +||||||||=|
T Consensus 155 ~~l~~~Gvd~i~Vh~-Rt~~~~y~g~~~~~~~i~~ik~~--~~iPVi~nGdI~t~---~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 155 DAVQQAGATELVVHG-RTKEDGYRAEHINWQAIGEIRQR--LTIPVIANGEIWDW---QSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHHHhcCCCEEEECC-CCCccCCCCCcccHHHHHHHHhh--cCCcEEEeCCcCCH---HHHHHHHhccCCCEEEEcHHhH
Confidence 445578999998852 222 133333333322 2567776 45554 345555544 99999999976
Q ss_pred cc
Q 008319 342 GA 343 (570)
Q Consensus 342 g~ 343 (570)
+-
T Consensus 229 ~n 230 (312)
T PRK10550 229 NI 230 (312)
T ss_pred hC
Confidence 54
No 492
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=31.25 E-value=1.5e+02 Score=30.19 Aligned_cols=60 Identities=12% Similarity=0.265 Sum_probs=41.9
Q ss_pred hhhhhhcCCcEEEecCCCChhH--------HHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh----CCEEEEcC
Q 008319 273 IKFGVDNQVDFYAVSFVKDAKV--------VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVAR 338 (570)
Q Consensus 273 I~~~~~~gvd~I~~SfV~sa~d--------v~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~----sDgImIgr 338 (570)
...|.+.|++|| .|||.+-+| +.++.+.+...+.+++|++ .+++|.++++++ +|.+=+.+
T Consensus 119 a~~Aa~aGa~yv-sPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILa-----AS~r~~~~v~~a~~~G~d~vTvp~ 190 (222)
T PRK12656 119 GLLAIEAGADYL-APYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILA-----ASFKNVAQVNKAFALGAQAVTAGP 190 (222)
T ss_pred HHHHHHCCCCEE-ecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEE-----EecCCHHHHHHHHHcCCCEEecCH
Confidence 355667899885 688887554 3455666767777888877 678888888865 56665543
No 493
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=31.22 E-value=3.3e+02 Score=29.32 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=52.6
Q ss_pred ecCcchhhhHHHHHHhCCEEEEcCCCcccCCCC-CCHHHHHHHHHHHHHHcCCCEEEEccchhhhhcCCCcChHH-----
Q 008319 315 IESADSIPNLHSIISASDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE----- 388 (570)
Q Consensus 315 IEt~~gv~NldeIl~~sDgImIgrGDLg~eig~-~~v~~~qk~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrAE----- 388 (570)
-|.+.|....=|=++.+|.|++|||-|-.++.. =-++.+.+. -++.-.|++.-.+++. ....+|.+=
T Consensus 174 ~~~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~ea----Lr~~~ap~i~v~n~~~---~~g~~t~~~~~~d~ 246 (323)
T COG0391 174 PEKPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEA----LRETVAPIVYVCNLMT---QAGKETDGLSVEDH 246 (323)
T ss_pred CCCCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHH----HHhCCCCEEEeccCCC---CCCcccccccHHHH
Confidence 366777665555566799999999999999864 233333333 3336666654333211 111122221
Q ss_pred HhHHHHHHHhC-ccEEEecccc
Q 008319 389 VSDIAIAVREG-ADAVMLSGET 409 (570)
Q Consensus 389 v~Dv~nav~~G-~D~vmLs~ET 409 (570)
+..++.....+ .|.+++...+
T Consensus 247 i~~i~~~~g~~~iD~vivd~~~ 268 (323)
T COG0391 247 IAALAQHYGAFVIDAVIVDNDD 268 (323)
T ss_pred HHHHHHHhCcccCcEEEECCCC
Confidence 55566777777 8999997543
No 494
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=31.16 E-value=1.8e+02 Score=31.07 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=48.7
Q ss_pred CCceEEEecCCCCC----C--------------HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCCcEE
Q 008319 99 RKTKIVCTIGPSTS----S--------------REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVA 160 (570)
Q Consensus 99 r~tKIi~TiGPs~~----~--------------~e~l~~li~~Gm~v~RiN~sHg~~e~~~~~i~~ir~~~~~~~~~~i~ 160 (570)
|++-+.+||||-.. + .|+++-|++.|+|++-|-.... ..+.+..+..+|+..++.+ ..++
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D-~l~~KaA~~a~~~~~~~~~-~~LP 190 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD-TLNAKAAVFAAREVFEELG-VRLP 190 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc-HHHHHHHHHHHHHHHHhcC-Cccc
Confidence 67889999999763 1 2457779999999999987655 4578889999999988877 5555
Q ss_pred EEe
Q 008319 161 IML 163 (570)
Q Consensus 161 I~~ 163 (570)
+|+
T Consensus 191 v~~ 193 (311)
T COG0646 191 VMI 193 (311)
T ss_pred EEE
Confidence 554
No 495
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.12 E-value=1e+02 Score=32.53 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=47.2
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchh--hhHHHHHHh-CCEEEEcC
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 338 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv--~NldeIl~~-sDgImIgr 338 (570)
.+.+++..+++.|+|.|.+=.. +++++.+.-.++. .+. +||-.-|+ +|+.++++. +|.|.+|.
T Consensus 201 ~slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~---~~~----~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 201 DRLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVD---GRA----IVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CCHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhC---CCe----EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 3567778888999999999876 7888877766663 222 56655554 588998888 99999974
No 496
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=31.10 E-value=1.4e+02 Score=30.81 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=42.1
Q ss_pred hhHHHhhhhhhcCCcEEEecCCCChh----HHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh---CCEEEEcCCC
Q 008319 268 KDWEDIKFGVDNQVDFYAVSFVKDAK----VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---SDGAMVARGD 340 (570)
Q Consensus 268 kD~~dI~~~~~~gvd~I~~SfV~sa~----dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~---sDgImIgrGD 340 (570)
++.++++.+++.|++.|++.. |+-. |+....++....-.+..+|+ |+ |+.+.+++... +||+.||-.-
T Consensus 159 h~~~El~~a~~~ga~iiGINn-RdL~t~~vd~~~~~~L~~~ip~~~~~Is--ES--GI~t~~d~~~l~~~~davLvG~~l 233 (247)
T PRK13957 159 HTEDEAKLALDCGAEIIGINT-RDLDTFQIHQNLVEEVAAFLPPNIVKVG--ES--GIESRSDLDKFRKLVDAALIGTYF 233 (247)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceECHHHHHHHHhhCCCCcEEEE--cC--CCCCHHHHHHHHHhCCEEEECHHH
Confidence 677888889999999998872 2221 12222233322233444554 43 67666666433 8999998654
Q ss_pred ccc
Q 008319 341 LGA 343 (570)
Q Consensus 341 Lg~ 343 (570)
+..
T Consensus 234 m~~ 236 (247)
T PRK13957 234 MEK 236 (247)
T ss_pred hCC
Confidence 443
No 497
>PRK12346 transaldolase A; Provisional
Probab=31.08 E-value=92 Score=33.33 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=32.4
Q ss_pred hhhhhcCCcEEEecCCCChhHH---------------------HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHh
Q 008319 274 KFGVDNQVDFYAVSFVKDAKVV---------------------HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330 (570)
Q Consensus 274 ~~~~~~gvd~I~~SfV~sa~dv---------------------~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~ 330 (570)
..+.+.|+++| .|||.+-.|+ .++.+|++..|.+++|++ .+++|.++|+..
T Consensus 164 ~~aa~AGa~~I-SPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-----ASfRn~~qi~al 235 (316)
T PRK12346 164 RACAEAGVFLI-SPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-----ASFRRTEQILAL 235 (316)
T ss_pred HHHHHcCCCEE-EecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-----cccCCHHHHHHH
Confidence 34557899876 6889887763 334455555555666665 466667766644
No 498
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=31.06 E-value=4.6e+02 Score=27.64 Aligned_cols=128 Identities=9% Similarity=0.045 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCCEEEEccchhhhhcCCCcChH---HHhHHHHHHHhCccEEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 008319 356 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRA---EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432 (570)
Q Consensus 356 ~Ii~~c~~~gKPvivaTqmLeSM~~~~~PtrA---Ev~Dv~nav~~G~D~vmLs~ETA~G~yP~eaV~~m~~I~~~aE~~ 432 (570)
-+...|+..|.++.+... ....+... .-.....+-..|+..+...++ .+..++.+ ..+++....
T Consensus 80 alA~~a~~~G~~~~i~vp------~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~----~~~~~~~~---~~a~~l~~~ 146 (331)
T PRK03910 80 QTAAAAAKLGLKCVLLLE------NPVPTEAENYLANGNVLLDDLFGAEIHVVPAG----TDMDAQLE---ELAEELRAQ 146 (331)
T ss_pred HHHHHHHHhCCcEEEEEc------CCCCcccccccCCCcHHHHHHcCCEEEEeCcc----chHHHHHH---HHHHHHHHc
Confidence 456689999999987411 11111110 001234456789998888654 23333222 222222211
Q ss_pred CCCCCCCCCcccCCCCChhHHHHHHHHHHHhhcC-----C-cEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 008319 433 LPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLN-----T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 498 (570)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-----a-~Iiv~T~sG~tA~~ls----~~RP~~pIiavt~~~ 498 (570)
.+......... ....-.+....-+.++.++++ . .||+..-+|.|+.-++ .+.|.++||++.+..
T Consensus 147 ~~~~~~~~~~~--~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~ 220 (331)
T PRK03910 147 GRRPYVIPVGG--SNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSR 220 (331)
T ss_pred CCceEEECCCC--CCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 11000000000 000001111122445555543 4 7999999999985554 457999999999853
No 499
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=31.03 E-value=2.3e+02 Score=30.57 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 008319 296 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 371 (570)
Q Consensus 296 ~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImIgrGDLg~eig~~~v~~~qk~Ii~~c~~~gKPviva 371 (570)
..+++.|.+.|..+.+-+--+... -+|+.++++-.|.|+-+-.+ +.....+-+.|++.++|++.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~----------~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 85 ESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDN----------FDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 346677888888888776444433 35788888889988876432 244556778999999998875
No 500
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=30.84 E-value=1.2e+02 Score=31.07 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=54.7
Q ss_pred hhhHHHhhhhhhcCCcEEEecCCCChhHHHHHHHHHHhcCCCceEEEeecCcchhhhHHHHHHhCCEEEE
Q 008319 267 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMV 336 (570)
Q Consensus 267 ~kD~~dI~~~~~~gvd~I~~SfV~sa~dv~~vr~~l~~~~~~i~IiaKIEt~~gv~NldeIl~~sDgImI 336 (570)
+.|.+.++.-++.|+||+.--++-+++.+.++.+.++..|-+++|++-|=-.....++.-+.+.+ |+-+
T Consensus 147 ~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~-Gv~v 215 (274)
T cd00537 147 EEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC-GVEI 215 (274)
T ss_pred HHHHHHHHHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh-CCCC
Confidence 56778888888999999999999999999998888988887889999876666666776666555 4433
Done!