Query 008320
Match_columns 570
No_of_seqs 325 out of 1191
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 22:19:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.5 6.4E-14 1.4E-18 124.2 7.2 54 484-537 34-91 (102)
2 PF00612 IQ: IQ calmodulin-bin 97.8 2.3E-05 4.9E-10 50.9 3.5 21 106-126 1-21 (21)
3 KOG0160 Myosin class V heavy c 97.8 4.9E-05 1.1E-09 88.5 7.7 69 103-175 670-739 (862)
4 KOG0160 Myosin class V heavy c 97.7 0.00012 2.7E-09 85.2 8.7 76 93-171 683-758 (862)
5 smart00015 IQ Short calmodulin 97.3 0.00022 4.8E-09 48.4 2.9 22 105-126 2-23 (26)
6 KOG0164 Myosin class I heavy c 96.9 0.0029 6.3E-08 72.2 8.3 63 103-175 693-755 (1001)
7 PTZ00014 myosin-A; Provisional 96.8 0.0019 4.2E-08 75.8 6.5 41 107-147 778-819 (821)
8 KOG0520 Uncharacterized conser 96.5 0.0022 4.7E-08 75.6 4.2 75 104-178 808-890 (975)
9 PF00612 IQ: IQ calmodulin-bin 96.2 0.0057 1.2E-07 39.6 3.2 19 129-147 2-20 (21)
10 KOG2128 Ras GTPase-activating 95.6 0.025 5.4E-07 68.7 7.5 78 99-176 557-644 (1401)
11 COG5022 Myosin heavy chain [Cy 95.5 0.023 5.1E-07 69.3 6.8 48 100-147 739-787 (1463)
12 KOG0520 Uncharacterized conser 95.5 0.006 1.3E-07 72.0 1.6 84 91-174 818-934 (975)
13 smart00015 IQ Short calmodulin 94.9 0.028 6.2E-07 38.1 2.9 20 128-147 3-22 (26)
14 PTZ00014 myosin-A; Provisional 94.0 0.11 2.3E-06 61.6 6.9 41 129-172 778-818 (821)
15 KOG2128 Ras GTPase-activating 87.7 0.74 1.6E-05 56.7 5.3 63 109-174 538-612 (1401)
16 KOG0377 Protein serine/threoni 83.1 1.8 3.9E-05 48.2 5.1 36 102-137 13-48 (631)
17 KOG0161 Myosin class II heavy 82.3 4.1 9E-05 52.5 8.5 44 104-147 771-818 (1930)
18 KOG0164 Myosin class I heavy c 81.4 2.3 5E-05 49.7 5.4 73 92-171 705-784 (1001)
19 KOG0161 Myosin class II heavy 80.1 4.1 8.8E-05 52.6 7.4 46 129-174 774-819 (1930)
20 KOG4427 E3 ubiquitin protein l 79.9 1.9 4.2E-05 50.5 4.2 26 101-126 25-50 (1096)
21 KOG0942 E3 ubiquitin protein l 79.2 1.5 3.3E-05 52.1 3.2 28 99-126 22-49 (1001)
22 COG5022 Myosin heavy chain [Cy 74.4 8.6 0.00019 48.1 7.7 78 98-175 760-863 (1463)
23 KOG0162 Myosin class I heavy c 68.6 6.3 0.00014 46.4 4.6 39 106-148 696-736 (1106)
24 KOG0163 Myosin class VI heavy 66.1 18 0.0004 42.9 7.6 33 106-138 813-846 (1259)
25 KOG0377 Protein serine/threoni 51.8 25 0.00054 39.6 5.3 26 123-148 12-37 (631)
26 KOG4427 E3 ubiquitin protein l 42.5 79 0.0017 37.9 7.6 23 128-150 30-52 (1096)
27 KOG0942 E3 ubiquitin protein l 38.5 68 0.0015 39.0 6.5 23 127-149 28-50 (1001)
28 PF15157 IQ-like: IQ-like 37.7 31 0.00067 30.7 2.7 22 105-126 46-67 (97)
29 PF08763 Ca_chan_IQ: Voltage g 32.0 52 0.0011 24.6 2.8 19 106-124 9-27 (35)
30 KOG0163 Myosin class VI heavy 23.0 2.4E+02 0.0052 34.2 7.3 21 129-149 814-834 (1259)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.48 E-value=6.4e-14 Score=124.24 Aligned_cols=54 Identities=59% Similarity=0.771 Sum_probs=47.7
Q ss_pred CCcccccchhHHHhhhccCCCCCCcccc---ccccccccccCCC-CCCCCCCCCCCcc
Q 008320 484 LPSYMAATESAKAKLRLQGSPRSSQDSA---EKNSGTRRHSLPS-STNSKISSQSPRT 537 (570)
Q Consensus 484 ~psym~~tesakaklr~~~spr~~~d~~---~~~~~~rr~slp~-~~ngk~~s~spr~ 537 (570)
+|+|||+|||||||+|.|++||++++.. ++...++|||||. ..++..++++|++
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~ 91 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT 91 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence 9999999999999999999999999986 4557889999997 4567888888876
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.82 E-value=2.3e-05 Score=50.86 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008320 106 EKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 106 e~AAI~IQAafRGyLARR~~r 126 (570)
+.|||.||++||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999874
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.77 E-value=4.9e-05 Score=88.51 Aligned_cols=69 Identities=29% Similarity=0.296 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008320 103 IRQEKAATKAQAVFRGYLARRAFRA-LKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (570)
Q Consensus 103 lr~e~AAI~IQAafRGyLARR~~r~-lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~~ 175 (570)
.....+++.||..||||++|+.|.. .++++.||+++||++.|+.. + ...+++.||..+|++..|+.|..
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y~~ 739 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRYRA 739 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445677889999999999999884 47888999999999999822 2 46677788888888887777654
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.65 E-value=0.00012 Score=85.22 Aligned_cols=76 Identities=26% Similarity=0.221 Sum_probs=66.1
Q ss_pred eeeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 008320 93 LQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRH 171 (570)
Q Consensus 93 ~r~ar~r~e~lr~e~AAI~IQAafRGyLARR~~r~lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr 171 (570)
++++..|..|++.+.+++.||+.+||+++|+......+++.||..+|+++.|++|... ..+++.+|+.+|++.+|.
T Consensus 683 ~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~---~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 683 IRGYLARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRAL---IPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence 3455556779999999999999999999998333558999999999999999999554 889999999999999988
No 5
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.29 E-value=0.00022 Score=48.39 Aligned_cols=22 Identities=45% Similarity=0.776 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008320 105 QEKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 105 ~e~AAI~IQAafRGyLARR~~r 126 (570)
...+|+.||++||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999999999883
No 6
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.87 E-value=0.0029 Score=72.23 Aligned_cols=63 Identities=25% Similarity=0.276 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008320 103 IRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (570)
Q Consensus 103 lr~e~AAI~IQAafRGyLARR~~r~lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~~ 175 (570)
.+.-.-|+.||++||||++|.+|+.++++..|=.++|.+..+- .+..||.++|+++.++.|..
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~ks----------~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLKS----------YVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhccccCC
Confidence 3445678999999999999999998877666655888555443 34568999999998887754
No 7
>PTZ00014 myosin-A; Provisional
Probab=96.80 E-value=0.0019 Score=75.81 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHH
Q 008320 107 KAATKAQAVFRGYLARRAFRA-LKGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 107 ~AAI~IQAafRGyLARR~~r~-lkaiVrLQAlvRG~lvRrq~ 147 (570)
..++.||++||||++|+.|.. ..++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999985 58999999999999988753
No 8
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.51 E-value=0.0022 Score=75.59 Aligned_cols=75 Identities=29% Similarity=0.334 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHhhhhhhhcccc
Q 008320 104 RQEKAATKAQAVFRGYLARRAFRA-LKGIIRLQALIRGHLVRRQAVATL-------GAMLGLVKLQALVRGRKVRHSDIG 175 (570)
Q Consensus 104 r~e~AAI~IQAafRGyLARR~~r~-lkaiVrLQAlvRG~lvRrq~~~~l-------r~~~AaVrIQA~iRg~~aRr~~~~ 175 (570)
....||..||..||||+.|+.|.- ..-+|+||+.+||+.+|++|.... ..+-++-++|+-+|+++.|...+.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 346789999999999999999984 478999999999999999997432 235567788999999998887766
Q ss_pred ccc
Q 008320 176 LEV 178 (570)
Q Consensus 176 ~~~ 178 (570)
+..
T Consensus 888 ~~~ 890 (975)
T KOG0520|consen 888 QET 890 (975)
T ss_pred ccc
Confidence 544
No 9
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.23 E-value=0.0057 Score=39.62 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008320 129 KGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~ 147 (570)
+++|.||++|||+++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999987
No 10
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.63 E-value=0.025 Score=68.72 Aligned_cols=78 Identities=27% Similarity=0.362 Sum_probs=62.1
Q ss_pred cHHHHH-HHHHHHHHHHHHHHHHH---HHHHh--hhhHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHhhhh
Q 008320 99 DPEKIR-QEKAATKAQAVFRGYLA---RRAFR--ALKGIIRLQALIRGHLVRRQAVAT----LGAMLGLVKLQALVRGRK 168 (570)
Q Consensus 99 r~e~lr-~e~AAI~IQAafRGyLA---RR~~r--~lkaiVrLQAlvRG~lvRrq~~~~----lr~~~AaVrIQA~iRg~~ 168 (570)
+..+++ .......||++||||+. +..|. ...-++.+|++.||+++|+.+... ..++..++.||+.+|++.
T Consensus 557 ~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~ 636 (1401)
T KOG2128|consen 557 RLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFP 636 (1401)
T ss_pred hhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcc
Confidence 445555 56789999999999995 22222 348899999999999999998754 356889999999999999
Q ss_pred hhhccccc
Q 008320 169 VRHSDIGL 176 (570)
Q Consensus 169 aRr~~~~~ 176 (570)
.|..|..+
T Consensus 637 ~r~~y~~L 644 (1401)
T KOG2128|consen 637 NRKDYKLL 644 (1401)
T ss_pred cchHHHHH
Confidence 99887653
No 11
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.55 E-value=0.023 Score=69.28 Aligned_cols=48 Identities=31% Similarity=0.458 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHH
Q 008320 100 PEKIRQEKAATKAQAVFRGYLARRAFR-ALKGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 100 ~e~lr~e~AAI~IQAafRGyLARR~~r-~lkaiVrLQAlvRG~lvRrq~ 147 (570)
.+.......+++||++|||++.|++|. +++.+..||...+|++.|+.+
T Consensus 739 ~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 739 MRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 344455778999999999999999987 567777777777777776554
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.47 E-value=0.006 Score=72.05 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=66.9
Q ss_pred eEeeeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHHHH----------
Q 008320 91 LTLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRAL-----------KGIIRLQALIRGHLVRRQAVA---------- 149 (570)
Q Consensus 91 ~~~r~ar~r~e~lr~e~AAI~IQAafRGyLARR~~r~l-----------kaiVrLQAlvRG~lvRrq~~~---------- 149 (570)
..++++..|.+++-...=+++||+++|||..|+.|+.+ -+.-++|+.+||+..|+.+..
T Consensus 818 ~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~ 897 (975)
T KOG0520|consen 818 KKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIED 897 (975)
T ss_pred hhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHH
Confidence 56788899999999999999999999999999999843 345568999999987654321
Q ss_pred ------------HhhhhHHHHHHHHHHhhhhhhhccc
Q 008320 150 ------------TLGAMLGLVKLQALVRGRKVRHSDI 174 (570)
Q Consensus 150 ------------~lr~~~AaVrIQA~iRg~~aRr~~~ 174 (570)
..+..+++++||+.+|.+.++..|.
T Consensus 898 ~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 898 CYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 1245678999999999998885553
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.91 E-value=0.028 Score=38.06 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 008320 128 LKGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 128 lkaiVrLQAlvRG~lvRrq~ 147 (570)
..+++.||++|||+++|+.|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999988
No 14
>PTZ00014 myosin-A; Provisional
Probab=94.02 E-value=0.11 Score=61.65 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHS 172 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~ 172 (570)
..++.||++|||++.|+.|.. .+.++++||+.+|+++.++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~---~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRK---NIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999954 47899999999999998754
No 15
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=87.66 E-value=0.74 Score=56.65 Aligned_cols=63 Identities=33% Similarity=0.421 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHhhhhhhhccc
Q 008320 109 ATKAQAVFRGYLARRAFRAL--------KGIIRLQALIRGHLVRRQAVAT----LGAMLGLVKLQALVRGRKVRHSDI 174 (570)
Q Consensus 109 AI~IQAafRGyLARR~~r~l--------kaiVrLQAlvRG~lvRrq~~~~----lr~~~AaVrIQA~iRg~~aRr~~~ 174 (570)
..+||+..|||..|-.|+.. ..++.||++|||+++ |... .....-++++|+..|++..|..+.
T Consensus 538 ~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 538 KLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred chhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 35559999999999987732 568899999999996 2211 234677999999999999998764
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=83.14 E-value=1.8 Score=48.16 Aligned_cols=36 Identities=33% Similarity=0.220 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 008320 102 KIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQAL 137 (570)
Q Consensus 102 ~lr~e~AAI~IQAafRGyLARR~~r~lkaiVrLQAl 137 (570)
--+..+|||.||.|||+|.||...+..-....+|++
T Consensus 13 s~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 13 STRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 345589999999999999999988765555556665
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=82.29 E-value=4.1 Score=52.50 Aligned_cols=44 Identities=39% Similarity=0.476 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHH
Q 008320 104 RQEKAATKAQAVFRGYLARRAFRA----LKGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 104 r~e~AAI~IQAafRGyLARR~~r~----lkaiVrLQAlvRG~lvRrq~ 147 (570)
....-++.+|+.+|||++|+.|.. +.++..||..+|.|+..+..
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345567888999999999998773 37888889988888766543
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=81.36 E-value=2.3 Score=49.70 Aligned_cols=73 Identities=16% Similarity=0.034 Sum_probs=51.2
Q ss_pred EeeeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHH
Q 008320 92 TLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLG-------AMLGLVKLQALV 164 (570)
Q Consensus 92 ~~r~ar~r~e~lr~e~AAI~IQAafRGyLARR~~r~lkaiVrLQAlvRG~lvRrq~~~~lr-------~~~AaVrIQA~i 164 (570)
+.||+..|..|.+..++++.|+ +||.|.. ...+..||..+||...++.|...++ ...+-..||..+
T Consensus 705 ~~RG~~~R~ry~rmka~~~ii~-wyR~~K~------ks~v~el~~~~rg~k~~r~ygk~~~WP~pP~~Lr~~~~~L~~lf 777 (1001)
T KOG0164|consen 705 AWRGWLARQRYRRMKASATIIR-WYRRYKL------KSYVQELQRRFRGAKQMRDYGKSIRWPAPPLVLREFEELLRELF 777 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHhhhhccccCCCCCCCCCchHHHHHHHHHHHHH
Confidence 5678888999999999999999 9995543 3456778999999999988743211 233444556555
Q ss_pred hhhhhhh
Q 008320 165 RGRKVRH 171 (570)
Q Consensus 165 Rg~~aRr 171 (570)
-.|++.+
T Consensus 778 ~rwra~~ 784 (1001)
T KOG0164|consen 778 IRWRAWQ 784 (1001)
T ss_pred HHHHHHH
Confidence 4444443
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.14 E-value=4.1 Score=52.57 Aligned_cols=46 Identities=24% Similarity=0.176 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDI 174 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~ 174 (570)
.-++.|||.||||++|+.|........++..||..+|.|...+.+.
T Consensus 774 ~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~ 819 (1930)
T KOG0161|consen 774 QIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWP 819 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCH
Confidence 5688899999999999999877777899999999999997766554
No 20
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.89 E-value=1.9 Score=50.51 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008320 101 EKIRQEKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 101 e~lr~e~AAI~IQAafRGyLARR~~r 126 (570)
...|.+.||+.||+.||||++|+.|.
T Consensus 25 ~qrrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 25 YQRRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999999999999875
No 21
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.19 E-value=1.5 Score=52.07 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008320 99 DPEKIRQEKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 99 r~e~lr~e~AAI~IQAafRGyLARR~~r 126 (570)
|-+..+++.+|+.||+.||||++|++++
T Consensus 22 Ree~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 22 REEERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5566777899999999999999999765
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=74.42 E-value=8.6 Score=48.13 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHH-----------------------h
Q 008320 98 YDPEKIRQEKAATKAQAVFRGYLARRAFR---ALKGIIRLQALIRGHLVRRQAVAT-----------------------L 151 (570)
Q Consensus 98 ~r~e~lr~e~AAI~IQAafRGyLARR~~r---~lkaiVrLQAlvRG~lvRrq~~~~-----------------------l 151 (570)
.|.+|.+..+.+..||...+|++.|+.+. ..+++++||.++|....|..+... .
T Consensus 760 ~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~ 839 (1463)
T COG5022 760 LRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVE 839 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555566666666666666665544 235666666666666666554322 1
Q ss_pred hhhHHHHHHHHHHhhhhhhhcccc
Q 008320 152 GAMLGLVKLQALVRGRKVRHSDIG 175 (570)
Q Consensus 152 r~~~AaVrIQA~iRg~~aRr~~~~ 175 (570)
....+.+.+|.++|....+..+..
T Consensus 840 ~~~~~~~L~~~~~rs~~~~kr~~~ 863 (1463)
T COG5022 840 FSLKAEVLIQKFGRSLKAKKRFSL 863 (1463)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Confidence 123455556666666666655543
No 23
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=68.61 E-value=6.3 Score=46.37 Aligned_cols=39 Identities=26% Similarity=0.487 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHH
Q 008320 106 EKAATKAQAVFRGYLARRAFRALK--GIIRLQALIRGHLVRRQAV 148 (570)
Q Consensus 106 e~AAI~IQAafRGyLARR~~r~lk--aiVrLQAlvRG~lvRrq~~ 148 (570)
..-|.+||.+||.|++||.|..++ |.- +.-|...||++.
T Consensus 696 d~~A~~IQkAWRrfv~rrky~k~ree~t~----ll~gKKeRRr~S 736 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYEKMREEATK----LLLGKKERRRYS 736 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH
Confidence 356899999999999999998662 332 234666666663
No 24
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=66.08 E-value=18 Score=42.89 Aligned_cols=33 Identities=42% Similarity=0.720 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHH
Q 008320 106 EKAATKAQAVFRGYLARRAFR-ALKGIIRLQALI 138 (570)
Q Consensus 106 e~AAI~IQAafRGyLARR~~r-~lkaiVrLQAlv 138 (570)
-.+++++|++.||||+|++++ .+.++.++-++.
T Consensus 813 ae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 813 AECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 345677777777777777776 445555554443
No 25
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=51.85 E-value=25 Score=39.58 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008320 123 RAFRALKGIIRLQALIRGHLVRRQAV 148 (570)
Q Consensus 123 R~~r~lkaiVrLQAlvRG~lvRrq~~ 148 (570)
+.-+++++++.||.++|++.+|..+.
T Consensus 12 ~s~raikaAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 12 KSTRAIKAAILIQKWYRRYEARLEAR 37 (631)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445789999999999999998874
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.50 E-value=79 Score=37.94 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 008320 128 LKGIIRLQALIRGHLVRRQAVAT 150 (570)
Q Consensus 128 lkaiVrLQAlvRG~lvRrq~~~~ 150 (570)
..+++.||+++|||++|+.+...
T Consensus 30 ~~aa~~iq~~lrsyl~Rkk~~~~ 52 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVRKKAQIE 52 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998643
No 27
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.48 E-value=68 Score=39.01 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 008320 127 ALKGIIRLQALIRGHLVRRQAVA 149 (570)
Q Consensus 127 ~lkaiVrLQAlvRG~lvRrq~~~ 149 (570)
..+++|.+|++|||+++|++...
T Consensus 28 ~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 28 QEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HhccchHHHHHHHHHHHHHHHHH
Confidence 45899999999999999988653
No 28
>PF15157 IQ-like: IQ-like
Probab=37.69 E-value=31 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008320 105 QEKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 105 ~e~AAI~IQAafRGyLARR~~r 126 (570)
.+.-+..||++||-|++|....
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 3556788999999999988543
No 29
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=32.02 E-value=52 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008320 106 EKAATKAQAVFRGYLARRA 124 (570)
Q Consensus 106 e~AAI~IQAafRGyLARR~ 124 (570)
--|+..||-.||-|..|+.
T Consensus 9 ~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998885
No 30
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=22.98 E-value=2.4e+02 Score=34.22 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008320 129 KGIIRLQALIRGHLVRRQAVA 149 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~ 149 (570)
..++++|+++|||++|+++..
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhch
Confidence 568899999999999998753
Done!