Query 008320
Match_columns 570
No_of_seqs 325 out of 1191
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 3.6E-10 1.2E-14 88.7 7.9 47 104-150 3-50 (58)
2 2dfs_A Myosin-5A; myosin-V, in 98.9 8.3E-10 2.8E-14 129.6 7.7 81 92-175 777-860 (1080)
3 1n2d_C IQ2 and IQ3 motifs from 98.9 2.3E-09 7.8E-14 81.0 6.9 42 106-147 3-47 (48)
4 2dfs_A Myosin-5A; myosin-V, in 98.8 3.5E-09 1.2E-13 124.4 8.5 71 104-175 766-837 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.3 6.8E-07 2.3E-11 67.3 5.9 44 129-173 4-47 (48)
6 2ix7_C Myosin-5A; contractIle 98.1 2.9E-06 9.8E-11 66.4 5.6 45 128-175 5-49 (58)
7 1wdc_A Scallop myosin; calcium 97.7 9.3E-05 3.2E-09 59.0 7.0 44 104-147 4-51 (64)
8 2bl0_A Major plasmodial myosin 97.6 7.6E-05 2.6E-09 59.5 5.7 43 105-147 3-49 (63)
9 1kk8_A Myosin heavy chain, str 97.4 0.00015 5.3E-09 83.4 6.6 46 103-148 776-825 (837)
10 1wdc_A Scallop myosin; calcium 97.2 0.00057 1.9E-08 54.5 6.4 45 129-173 7-51 (64)
11 2bl0_A Major plasmodial myosin 97.2 0.00049 1.7E-08 54.7 5.9 45 129-173 5-49 (63)
12 2l53_B CAM, voltage-gated sodi 97.0 0.00054 1.8E-08 48.1 3.3 24 103-126 3-26 (31)
13 2kxw_B Sodium channel protein 96.8 0.00071 2.4E-08 46.1 2.8 22 103-124 3-24 (27)
14 1i84_S Smooth muscle myosin he 96.6 0.0017 5.8E-08 77.2 5.8 43 105-147 791-837 (1184)
15 1kk8_A Myosin heavy chain, str 96.4 0.0048 1.6E-07 71.1 8.1 46 129-174 780-825 (837)
16 3gn4_A Myosin-VI; unconvention 95.5 0.016 5.4E-07 54.0 5.4 31 107-137 46-77 (148)
17 1i84_S Smooth muscle myosin he 95.4 0.022 7.4E-07 67.8 7.9 46 129-174 793-838 (1184)
18 4anj_A Unconventional myosin-V 92.8 0.022 7.5E-07 67.2 0.5 67 106-173 775-843 (1052)
19 1w7j_A Myosin VA; motor protei 89.7 0.19 6.7E-06 57.7 4.0 25 105-129 767-791 (795)
20 3gn4_A Myosin-VI; unconvention 86.7 1.2 4E-05 41.5 6.5 32 129-163 46-77 (148)
21 4dck_A Sodium channel protein 84.9 0.82 2.8E-05 43.3 4.6 27 100-126 124-150 (168)
22 2l53_B CAM, voltage-gated sodi 73.8 2.4 8E-05 29.7 2.8 19 129-147 7-25 (31)
23 4anj_A Unconventional myosin-V 72.8 4.4 0.00015 48.0 6.5 43 128-173 774-816 (1052)
24 2kxw_B Sodium channel protein 69.4 2.5 8.6E-05 28.7 2.1 17 129-145 7-23 (27)
25 1w7j_A Myosin VA; motor protei 57.9 8.8 0.0003 44.2 5.0 21 129-149 769-789 (795)
26 2ycu_A Non muscle myosin 2C, a 28.9 8.6 0.00029 45.2 -1.1 59 109-168 767-826 (995)
27 3dvk_B Voltage-dependent R-typ 23.6 35 0.0012 22.4 1.5 17 106-122 6-22 (23)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.06 E-value=3.6e-10 Score=88.73 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 008320 104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVAT 150 (570)
Q Consensus 104 r~e~AAI~IQAafRGyLARR~~r~l-kaiVrLQAlvRG~lvRrq~~~~ 150 (570)
+...||+.||++||||++|+.|..+ .+++.||++|||+++|+.|...
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~ 50 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999966 6999999999999999999643
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.93 E-value=8.3e-10 Score=129.63 Aligned_cols=81 Identities=27% Similarity=0.230 Sum_probs=67.0
Q ss_pred EeeeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 008320 92 TLQDASYDPEKIRQEKAATKAQAVFRGYLARRAFRA---LKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRK 168 (570)
Q Consensus 92 ~~r~ar~r~e~lr~e~AAI~IQAafRGyLARR~~r~---lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~ 168 (570)
..|++..|..|.+...||+.||++||||++|+.|.. .++++.||++||||++|+.|... ..+++.||+.+||+.
T Consensus 777 ~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~l---r~aai~IQs~~Rg~l 853 (1080)
T 2dfs_A 777 TIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCM---RDATIALQALLRGYL 853 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 456777778888888999999999999999998763 37899999999999999998543 678888999999988
Q ss_pred hhhcccc
Q 008320 169 VRHSDIG 175 (570)
Q Consensus 169 aRr~~~~ 175 (570)
+|+.+..
T Consensus 854 aRr~~~~ 860 (1080)
T 2dfs_A 854 VRNKYQM 860 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 3
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.3e-09 Score=80.98 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHH
Q 008320 106 EKAATKAQAVFRGYLARRAFRAL---KGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 106 e~AAI~IQAafRGyLARR~~r~l---kaiVrLQAlvRG~lvRrq~ 147 (570)
..+|+.||++||||++|+.|..+ .+++.||++|||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 57899999999999999999854 4999999999999999876
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.84 E-value=3.5e-09 Score=124.36 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008320 104 RQEKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (570)
Q Consensus 104 r~e~AAI~IQAafRGyLARR~~r~l-kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~~ 175 (570)
+...+|+.||++||||++|+.|..+ .+++.||++|||+++|+.+.. ++...++++||+.||+|.+|+.|..
T Consensus 766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHHHHHH
Confidence 3467999999999999999999965 799999999999999999854 4678899999999999999998754
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.34 E-value=6.8e-07 Score=67.29 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~ 173 (570)
.+++.||+++||+++|+.+.. ++...+++.||+.+||+.+|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence 689999999999999999954 34566999999999999999865
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.13 E-value=2.9e-06 Score=66.38 Aligned_cols=45 Identities=29% Similarity=0.368 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccc
Q 008320 128 LKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDIG 175 (570)
Q Consensus 128 lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~~ 175 (570)
..+++.||+.|||+++|+.|.. ...+++.||+.+||+.+|+.+..
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999954 46899999999999999988754
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.67 E-value=9.3e-05 Score=59.04 Aligned_cols=44 Identities=41% Similarity=0.527 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 008320 104 RQEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 104 r~e~AAI~IQAafRGyLARR~~r~l----kaiVrLQAlvRG~lvRrq~ 147 (570)
+....++.||+++|||++|+.|..+ .|+..||..+|+++.++..
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4457789999999999999988854 5677889999888887754
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.62 E-value=7.6e-05 Score=59.46 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 008320 105 QEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 105 ~e~AAI~IQAafRGyLARR~~r~l----kaiVrLQAlvRG~lvRrq~ 147 (570)
....++.||+++|||++|+.|..+ .|+..||..+|+++.++..
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 346788888888888888888744 5666888888888877654
No 9
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.39 E-value=0.00015 Score=83.38 Aligned_cols=46 Identities=39% Similarity=0.474 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 008320 103 IRQEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQAV 148 (570)
Q Consensus 103 lr~e~AAI~IQAafRGyLARR~~r~l----kaiVrLQAlvRG~lvRrq~~ 148 (570)
.+...+|+.||++||||++|+.|..+ .+++.||+.||||++|+.+.
T Consensus 776 ~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 776 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 34456899999999999999999854 68899999999999998773
No 10
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.24 E-value=0.00057 Score=54.47 Aligned_cols=45 Identities=31% Similarity=0.268 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~ 173 (570)
..++.|||.+||+++|+.|...+....|+..||..+|++..++..
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 568999999999999999987777788888999999999987754
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.22 E-value=0.00049 Score=54.75 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~ 173 (570)
..++.|||.+||+++|+.|...+....|+..||..+|++..++..
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 467899999999999999988777788888999999999987754
No 12
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.96 E-value=0.00054 Score=48.10 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 008320 103 IRQEKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 103 lr~e~AAI~IQAafRGyLARR~~r 126 (570)
.+++.+|+.||.+||+|+.|+.+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357899999999999999998754
No 13
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.80 E-value=0.00071 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 008320 103 IRQEKAATKAQAVFRGYLARRA 124 (570)
Q Consensus 103 lr~e~AAI~IQAafRGyLARR~ 124 (570)
.+++.||+.||.+||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3678999999999999999864
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.58 E-value=0.0017 Score=77.16 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHH
Q 008320 105 QEKAATKAQAVFRGYLARRAFRAL----KGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 105 ~e~AAI~IQAafRGyLARR~~r~l----kaiVrLQAlvRG~lvRrq~ 147 (570)
...+|+.||++||||++|+.|..+ .+++.||+.||||+.|+.+
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 347899999999999999999854 6899999999999999764
No 15
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.42 E-value=0.0048 Score=71.15 Aligned_cols=46 Identities=30% Similarity=0.248 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDI 174 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~ 174 (570)
..++.||++|||+++|++|...+..+.+++.||+.+|++.+|+.+.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 5788999999999999999776566789999999999999988764
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.46 E-value=0.016 Score=54.02 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHH
Q 008320 107 KAATKAQAVFRGYLARRAFR-ALKGIIRLQAL 137 (570)
Q Consensus 107 ~AAI~IQAafRGyLARR~~r-~lkaiVrLQAl 137 (570)
.++|+||+++||||+|+.|+ ++.|+.++.++
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L 77 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPRIDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44455555555555555554 33444444433
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.44 E-value=0.022 Score=67.76 Aligned_cols=46 Identities=24% Similarity=0.115 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhccc
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSDI 174 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~~ 174 (570)
..++.||++|||+++|+.|...+....+++.||+.||+|..++.+.
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 6789999999999999999776666789999999999999988754
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=92.84 E-value=0.022 Score=67.19 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHhhhhhhhcc
Q 008320 106 EKAATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATL-GAMLGLVKLQALVRGRKVRHSD 173 (570)
Q Consensus 106 e~AAI~IQAafRGyLARR~~r~l-kaiVrLQAlvRG~lvRrq~~~~l-r~~~AaVrIQA~iRg~~aRr~~ 173 (570)
..+|+.|| .+|||++|++|+.+ .+++.||.+.|++..|+...... +....+.-|++.+|++..|+.|
T Consensus 775 ~~~~~~iq-~~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~~~r~~ 843 (1052)
T 4anj_A 775 DHLAELVK-RVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDVNGHKF 843 (1052)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEETTEEE
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHHHhhhh
Confidence 46667666 57999999999965 78999999999988776653210 1111222344555555555554
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=89.69 E-value=0.19 Score=57.65 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 008320 105 QEKAATKAQAVFRGYLARRAFRALK 129 (570)
Q Consensus 105 ~e~AAI~IQAafRGyLARR~~r~lk 129 (570)
...+|+.||++||||++|+.|+.++
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999888664
No 20
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=86.72 E-value=1.2 Score=41.50 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008320 129 KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQAL 163 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~ 163 (570)
.++|+||+.+|||++|+++.-. ..++.++-++
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPR---i~g~~kv~~L 77 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPR---IDGLVKVGTL 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHH
Confidence 6789999999999999998432 4455555444
No 21
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=84.90 E-value=0.82 Score=43.32 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008320 100 PEKIRQEKAATKAQAVFRGYLARRAFR 126 (570)
Q Consensus 100 ~e~lr~e~AAI~IQAafRGyLARR~~r 126 (570)
....++..||+.||.+||.|+.|+.+.
T Consensus 124 ~~~~~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 124 LRRKHEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345688899999999999999888765
No 22
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=73.80 E-value=2.4 Score=29.74 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008320 129 KGIIRLQALIRGHLVRRQA 147 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~ 147 (570)
.+++.||..||+|+.|+..
T Consensus 7 ~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5788999999999988754
No 23
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=72.79 E-value=4.4 Score=48.01 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcc
Q 008320 128 LKGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRKVRHSD 173 (570)
Q Consensus 128 lkaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~aRr~~ 173 (570)
+..++.+|..+||+++|++|.. ...+++.||.+.|+++.|...
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 3444555556899999999954 467788888877777766544
No 24
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=69.41 E-value=2.5 Score=28.65 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008320 129 KGIIRLQALIRGHLVRR 145 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRr 145 (570)
.+++.||..||+|+.++
T Consensus 7 ~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67888999999998875
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=57.89 E-value=8.8 Score=44.16 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 008320 129 KGIIRLQALIRGHLVRRQAVA 149 (570)
Q Consensus 129 kaiVrLQAlvRG~lvRrq~~~ 149 (570)
..++.||++|||+++|++|..
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~ 789 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMR 789 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888999999998888854
No 26
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=28.90 E-value=8.6 Score=45.22 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 008320 109 ATKAQAVFRGYLARRAFRAL-KGIIRLQALIRGHLVRRQAVATLGAMLGLVKLQALVRGRK 168 (570)
Q Consensus 109 AI~IQAafRGyLARR~~r~l-kaiVrLQAlvRG~lvRrq~~~~lr~~~AaVrIQA~iRg~~ 168 (570)
|..++.+||+.+++..++.. .+++.||+++||+..++..... .......+||+.++...
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekp-p~~~ek~rLeal~~~iq 826 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP-PKGQEVSELEAIYNSLQ 826 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHH-HHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence 34456666766666555533 6788888888888777665321 11223345555555433
No 27
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=23.61 E-value=35 Score=22.41 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008320 106 EKAATKAQAVFRGYLAR 122 (570)
Q Consensus 106 e~AAI~IQAafRGyLAR 122 (570)
.-|+..||-.||.+..|
T Consensus 6 iYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 35788999999988765
Done!