BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008323
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VX8|D Chain D, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
pdb|3VX8|A Chain A, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3
Complex
Length = 323
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/319 (71%), Positives = 268/319 (84%), Gaps = 3/319 (0%)
Query: 14 ILQFAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLP 73
ILQFAP SSVDEGFWH SSLKL+KLGID+SPI ITGFY PC H QVSNHL+LL+ESLP
Sbjct: 8 ILQFAPLNSSVDEGFWHSFSSLKLDKLGIDDSPISITGFYGPCGHPQVSNHLTLLSESLP 67
Query: 74 SDSDEQSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKA 133
D EQS A S G+RNKC VPG LYN+NT+ESF +DKQSLLK EA KIWEDI SGKA
Sbjct: 68 LD--EQSLIASTSHGNRNKCPVPGILYNTNTVESFNKLDKQSLLKAEANKIWEDIQSGKA 125
Query: 134 VEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQEAESVSA 193
+ED +VL RFLVISFADLKKWSF YWFAFPA VLDPP ++++LKPAS +FSS+EAESVSA
Sbjct: 126 LEDPSVLPRFLVISFADLKKWSFRYWFAFPAFVLDPPVSLIELKPASEYFSSEEAESVSA 185
Query: 194 ACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPCHLQNHPG 253
AC+DWR+S LT DVP+FL++++ +S+A+IRHLKD EAC+GD QKLLFGFYDPCHL ++PG
Sbjct: 186 ACNDWRDSDLTTDVPFFLVSVSSDSKASIRHLKDLEACQGDHQKLLFGFYDPCHLPSNPG 245
Query: 254 WPLRNFLALILTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQGWGDHQCVPNTVG 313
WPLRN+LALI +RW L++V F CYRE+RGF DL LSLVG+A IT+ G + VPN+VG
Sbjct: 246 WPLRNYLALIRSRWNLETVWFFCYRESRGFADLNLSLVGQASITLSSG-ESAETVPNSVG 304
Query: 314 WELNKGRKVPRCISLAKSM 332
WELNKG++VPR ISLA SM
Sbjct: 305 WELNKGKRVPRSISLANSM 323
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 212/573 (36%), Positives = 300/573 (52%), Gaps = 95/573 (16%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I +++ C K+L D
Sbjct: 162 SLKGLFSKCQKW------FDVNYSKWVCILDADDEI---VNYDKCIIRKTKVL-AIRDTS 211
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
++N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 212 TMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 262
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLNL 359
+ + GWE N +G+ PR + L+ +DP ++A + DLNLKLM+WR LP LNL
Sbjct: 263 SSSSNPDM-KVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNL 321
Query: 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419
DI+ + K LLLGAGTLGC V+R L+AWGVRKIT +DNG V+ SNP+RQ+LY +DC G
Sbjct: 322 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC---G 378
Query: 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIF 479
KA A SL+RIFP + A GV ++IPM GH + +E D RL LI HD+IF
Sbjct: 379 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH--KDFDRLRALIKEHDIIF 436
Query: 480 LLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSAD 539
LL D+RESRWLP+LL NK I AALGFDS+LVMRHG
Sbjct: 437 LLVDSRESRWLPSLLSNIENKTVINAALGFDSYLVMRHG--------------------- 475
Query: 540 MDNLGLNNRD--GGQRLGCYFCNDVVAPTDVIS 570
NRD ++LGCYFC+DVVAPTD ++
Sbjct: 476 -------NRDEQSSKQLGCYFCHDVVAPTDSLT 501
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 212/573 (36%), Positives = 300/573 (52%), Gaps = 95/573 (16%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 9 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 54
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 55 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 114
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 115 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 162
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I +++ C K+L D
Sbjct: 163 SLKGLFSKCQKW------FDVNYSKWVCILDADDEI---VNYDKCIIRKTKVL-AIRDTS 212
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
++N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 213 TMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 263
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLNL 359
+ + GWE N +G+ PR + L+ +DP ++A + DLNLKLM+WR LP LNL
Sbjct: 264 SSSSNPDM-KVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNL 322
Query: 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419
DI+ + K LLLGAGTLGC V+R L+AWGVRKIT +DNG V+ SNP+RQ+LY +DC G
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC---G 379
Query: 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIF 479
KA A SL+RIFP + A GV ++IPM GH + +E D RL LI HD+IF
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH--KDFDRLRALIKEHDIIF 437
Query: 480 LLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSAD 539
LL D+RESRWLP+LL NK I AALGFDS+LVMRHG
Sbjct: 438 LLVDSRESRWLPSLLSNIENKTVINAALGFDSYLVMRHG--------------------- 476
Query: 540 MDNLGLNNRD--GGQRLGCYFCNDVVAPTDVIS 570
NRD ++LGCYFC+DVVAPTD ++
Sbjct: 477 -------NRDEQSSKQLGCYFCHDVVAPTDSLT 502
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 319 bits (817), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 212/573 (36%), Positives = 300/573 (52%), Gaps = 95/573 (16%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 9 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 54
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 55 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 114
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 115 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 162
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I +++ C K+L D
Sbjct: 163 SLKGLFSKCQKW------FDVNYSKWVCILDADDEI---VNYDKCIIRKTKVL-AIRDTS 212
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
++N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 213 TMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 263
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLNL 359
+ + GWE N +G+ PR + L+ +DP ++A + DLNLKLM+WR LP LNL
Sbjct: 264 SSSSNPDM-KVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDLNL 322
Query: 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419
DI+ + K LLLGAGTLGC V+R L+AWGVRKIT +DNG V+ SNP+RQ+LY +DC G
Sbjct: 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC---G 379
Query: 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIF 479
KA A SL+RIFP + A GV ++IPM GH + +E D RL LI HD+IF
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH--KDFDRLRALIKEHDIIF 437
Query: 480 LLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSAD 539
LL D+RESRWLP+LL NK I AALGFDS+LVMRHG
Sbjct: 438 LLVDSRESRWLPSLLSNIENKTVINAALGFDSYLVMRHG--------------------- 476
Query: 540 MDNLGLNNRD--GGQRLGCYFCNDVVAPTDVIS 570
NRD ++LGCYFC+DVVAPTD ++
Sbjct: 477 -------NRDEQSSKQLGCYFCHDVVAPTDSLT 502
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 209/575 (36%), Positives = 297/575 (51%), Gaps = 99/575 (17%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTSQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLL--TIAPNSRATIRHLKDWEACEGDGQKLLFGFYD 244
+ + + C W + + + V I ++ IR K + D
Sbjct: 162 SLKGLFSKCQKWFDVNYSKWVCILDADDEIVNYDKSIIRKTK------------VLAIRD 209
Query: 245 PCHLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITV 298
++N P +NFL+++ L +KL L R+N G L +
Sbjct: 210 TSTMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----ID 260
Query: 299 PQGWGDHQCVPNTVGWELN-KGRKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSL 357
PQ + + GWE N +G+ PR + L+ +DP ++A + DLNLKLM+WR LP L
Sbjct: 261 PQSSSSNPDM-KVSGWERNVQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILPDL 319
Query: 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLN 417
NLDI+ + K LLLGAGTLGC V+R L+AWGVRKIT +DNG V+ SNP+RQ+LY +D
Sbjct: 320 NLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFED--- 376
Query: 418 GGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDV 477
G KA A SL+RIFP + A GV ++IPM GH + +E D RL LI HD+
Sbjct: 377 AGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQH--KDFDRLRALIKEHDI 434
Query: 478 IFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLS 537
IFLL D+RESRWLP+LL NK I AALGFDS+LVMRHG
Sbjct: 435 IFLLVDSRESRWLPSLLSNIENKTVINAALGFDSYLVMRHG------------------- 475
Query: 538 ADMDNLGLNNRD--GGQRLGCYFCNDVVAPTDVIS 570
NRD ++LGCYFC+DVVAPTD ++
Sbjct: 476 ---------NRDEQSSKQLGCYFCHDVVAPTDSLT 501
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 235 bits (600), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/241 (52%), Positives = 155/241 (64%), Gaps = 35/241 (14%)
Query: 332 MDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKI 391
+DP ++A + DLNLKLM+WR LP LNLDI+ + K LLLGAGTLGC V+R L+AWGVRKI
Sbjct: 6 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKI 65
Query: 392 TLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGH 451
T +DNG V+ SNP+RQ+LY +DC G KA A SL+RIFP + A GV ++IPM GH
Sbjct: 66 TFVDNGTVSYSNPVRQALYNFEDC---GKPKAELAAASLKRIFPLMDATGVKLSIPMIGH 122
Query: 452 PVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDS 511
+ +E D RL LI HD+IFLL D+RESRWLP+LL NK I AALGFDS
Sbjct: 123 KLVNEEAQH--KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFDS 180
Query: 512 FLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRD--GGQRLGCYFCNDVVAPTDVI 569
+LVMRHG NRD ++LGCYFC+DVVAPTD +
Sbjct: 181 YLVMRHG----------------------------NRDEQSSKQLGCYFCHDVVAPTDSL 212
Query: 570 S 570
+
Sbjct: 213 T 213
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/237 (52%), Positives = 152/237 (64%), Gaps = 35/237 (14%)
Query: 336 RLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395
++A + DLNLKLM+WR LP LNLDI+ + K LLLGAGTLGC V+R L+AWGVRKIT +D
Sbjct: 6 KIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVD 65
Query: 396 NGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPC 455
NG V+ SNP+RQ+LY +DC G KA A SL+RIFP + A GV ++IPM GH +
Sbjct: 66 NGTVSYSNPVRQALYNFEDC---GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVN 122
Query: 456 QEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVM 515
+E D RL LI HD+IFLL D+RESRWLP+LL NK I AALGFDS+LVM
Sbjct: 123 EEAQH--KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFDSYLVM 180
Query: 516 RHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRD--GGQRLGCYFCNDVVAPTDVIS 570
RHG NRD ++LGCYFC+DVVAPTD ++
Sbjct: 181 RHG----------------------------NRDEQSSKQLGCYFCHDVVAPTDSLT 209
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/240 (51%), Positives = 150/240 (62%), Gaps = 35/240 (14%)
Query: 333 DPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKIT 392
DP ++A + DLNLKL +WR LP LNLDI+ + K LLLGAGTLGC V+R L+AWGVRKIT
Sbjct: 3 DPLKIADQSVDLNLKLXKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKIT 62
Query: 393 LLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHP 452
+DNG V+ SNP+RQ+LY +DC G KA A SL+RIFP A GV ++IP GH
Sbjct: 63 FVDNGTVSYSNPVRQALYNFEDC---GKPKAELAAASLKRIFPLXDATGVKLSIPXIGHK 119
Query: 453 VPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSF 512
+ +E D RL LI HD+IFLL D+RESRWLP+LL NK I AALGFDS+
Sbjct: 120 LVNEEAQH--KDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFDSY 177
Query: 513 LVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRD--GGQRLGCYFCNDVVAPTDVIS 570
LV RHG NRD ++LGCYFC+DVVAPTD ++
Sbjct: 178 LVXRHG----------------------------NRDEQSSKQLGCYFCHDVVAPTDSLT 209
>pdb|3RUJ|A Chain A, Crystal Structure Of N-Terminal Region Of Yeast Atg7
Length = 296
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 60/335 (17%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I + ++ C K+L D
Sbjct: 162 SLKGLFSKCQKW------FDVNYSKWVCILDADDEIVN---YDKCIIRKTKVL-AIRDTS 211
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
+N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 212 TXENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 262
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLAKSMDP 334
+ GWE N +G+ PR + L+ +DP
Sbjct: 263 SSSSNPDX-KVSGWERNVQGKLAPRVVDLSSLLDP 296
>pdb|3T7G|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7G|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 60/330 (18%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I + ++ C K+L D
Sbjct: 162 SLKGLFSKCQKW------FDVNYSKWVCILDADDEIVN---YDKCIIRKTKVL-AIRDTS 211
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
++N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 212 TMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 262
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLA 329
+ + GWE N +G+ PR + L+
Sbjct: 263 SSSSNPDM-KVSGWERNVQGKLAPRVVDLS 291
>pdb|3T7F|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 143/330 (43%), Gaps = 60/330 (18%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCF-QRPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I + ++ C K+L D
Sbjct: 162 SLKGLFSKCQKW------FDVNYSKWVCILDADDEIVN---YDKCIIRKTKVL-AIRDTS 211
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
+N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 212 TXENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 262
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLA 329
+ GWE N +G+ PR + L+
Sbjct: 263 SSSSNPDX-KVSGWERNVQGKLAPRVVDLS 291
>pdb|4GSJ|A Chain A, Crystal Structure Of Atg7 Ntd K14a F16a D18a Mutant
Length = 291
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 60/330 (18%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F S++ F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFASALATSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I +++ C K+L D
Sbjct: 162 SLKGLFSKCQKW------FDVNYSKWVCILDADDEI---VNYDKCIIRKTKVL-AIRDTS 211
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
++N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 212 TMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 262
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLA 329
+ + GWE N +G+ PR + L+
Sbjct: 263 SSSSNPDM-KVSGWERNVQGKLAPRVVDLS 291
>pdb|3T7H|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
pdb|3T7H|B Chain B, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 291
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 60/330 (18%)
Query: 14 ILQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESL 72
+L +AP F+S +D F+ LS LKL+ L +D + P+T ++L ++
Sbjct: 8 VLSYAPAFKSFLDTSFFQELSRLKLDVLKLDSTCQPLT--------------VNLDLHNI 53
Query: 73 PSDSDE------QSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWE 126
P +D+ S + + N+ + G+++N N L+ F +DKQ L Q A + WE
Sbjct: 54 PKSADQVPLFLTNRSFEKHNNKRTNEVPLQGSIFNFNVLDEFKNLDKQLFLHQRALECWE 113
Query: 127 DIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQ 186
D ++D F++ISFADLKK+ F+YW P P +TV+ ++P
Sbjct: 114 D-----GIKDINKCVSFVIISFADLKKYRFYYWLGVPCFQ-RPSSTVLHVRPEP------ 161
Query: 187 EAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPC 246
+ + + C W DV Y ++ I + ++ C K+L D
Sbjct: 162 SLKGLFSKCQKW------FDVNYSKWVCILDADDEIVN---YDKCIIRKTKVL-AIRDTS 211
Query: 247 HLQNHPGWPLRNFLALI------LTRWKLKSVLFLCYRENRGFTDLGLSLVGEALITVPQ 300
++N P +NFL+++ L +KL L R+N G L + PQ
Sbjct: 212 TMENVPSALTKNFLSVLQYDVPDLIDFKL-----LIIRQNEGSFALNATFAS----IDPQ 262
Query: 301 GWGDHQCVPNTVGWELN-KGRKVPRCISLA 329
+ + GWE N +G+ R + L+
Sbjct: 263 SSSSNPDM-KVSGWERNVQGKLADRVVDLS 291
>pdb|3VX6|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd
pdb|3VX7|A Chain A, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd-Atg10
Complex
Length = 283
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 143/327 (43%), Gaps = 59/327 (18%)
Query: 15 LQFAP-FQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLP 73
L+FAP FQS VD F+H LS LKL+ +D Y Q ++++ L SL
Sbjct: 9 LKFAPSFQSFVDSSFFHELSRLKLDIFKLDSDE---KALYTQLDLNQFTSNV--LAISLR 63
Query: 74 SDSDEQSSTAEISRGSRNKCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKA 133
DS ++ E + + G L N NT+E F +K +K++ +++ + G
Sbjct: 64 DDSFQKPDNDE------HNIILKGYLLNFNTIELFKNCNKIQFIKEKGQEL---LQRGLE 114
Query: 134 VEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDLKPASLWFSSQEAESVSA 193
+ + ++S F +ISFADLKK+ F+YW P+ D + + V A
Sbjct: 115 NDLNEIIS-FYMISFADLKKYKFYYWICMPSFQSDGATYQI------------ISSKVIA 161
Query: 194 ACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPCHLQNHPG 253
+ SD S + +V + +AT +LK CE K++F D HL++ P
Sbjct: 162 SDSDISVSFIKQNVIIACVISGVIQKATPDNLK---VCE----KVVFK--DFSHLKDIPS 212
Query: 254 WPLRNFLALILTRW-KL--KSVLFLCY--RENRGFTDLGLSLVGEALITVPQGWGDHQCV 308
+N ILT W KL + +C+ + F EA I + G V
Sbjct: 213 AVTKN----ILTVWSKLSPRETYTICFLRSDESSF---------EAEIIINNGNNPSLKV 259
Query: 309 PNTVGWELNK-GRKVPRCISLAKSMDP 334
GWE N G+ P+ I L+ MDP
Sbjct: 260 S---GWEKNGLGKLAPKSIDLSSLMDP 283
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419
+ L + L++G G LGC ++ L + GV +TLLD V++SN RQ+L++ D + G
Sbjct: 27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHS-DATV--G 83
Query: 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIF 479
K +A +L RI P +A PV +++LDD L LI HD++
Sbjct: 84 QPKVESARDALTRINPHIAIT-----------PV-----NALLDDA-ELAALIAEHDLVL 126
Query: 480 LLTDTRESR 488
TD R
Sbjct: 127 DCTDNVAVR 135
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 355 PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD 414
P L D L + K ++LG G +G V+ +L G+ +I L+DN ++ +N RQ L++ DD
Sbjct: 109 PVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDD 168
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 355 PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD 414
P L D L + K ++LG G +G V+ +L G+ +I L+DN ++ +N RQ L++ DD
Sbjct: 106 PVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDD 165
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 408 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 464
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 465 PKAEVAAEFLNDRVP 479
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 90
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 91 PKAEVAAEFLNDRVP 105
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 37 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 93
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 94 PKAEVAAEFLNDRVP 108
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 37 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 93
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 94 PKAEVAAEFLNDRVP 108
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 37 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 93
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 94 PKAEVAAEFLNDRVP 108
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 37 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 93
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 94 PKAEVAAEFLNDRVP 108
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 47 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 103
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 104 PKAEVAAEFLNDRVP 118
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420
+L + K L++GAG LGC++ + L G R+I ++D + +SN RQ L+ D G
Sbjct: 66 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GR 122
Query: 421 FKAMAAVKSLERIFP 435
KA A + L P
Sbjct: 123 PKAEVAAEFLNDRVP 137
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 352 RQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411
R LP + ++ + L++GAG +GC++ + L+ G I L+D + +SN RQ L+
Sbjct: 7 RGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQ 66
Query: 412 LDDCLNGGDFKAMAAVKSLERIFP 435
G KA A +S+ + +P
Sbjct: 67 KKHV---GRSKAQVAKESVLQFYP 87
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 352 RQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411
R LP + ++ + L++GAG +GC++ + L+ G I L+D + +SN RQ L+
Sbjct: 25 RGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQ 84
Query: 412 LDDCLNGGDFKAMAAVKSLERIFP 435
G KA A +S+ + +P
Sbjct: 85 KKHV---GRSKAQVAKESVLQFYP 105
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 352 RQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411
R LP + ++ + L++GAG +GC++ + L+ G I L+D + +SN RQ L+
Sbjct: 5 RGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQ 64
Query: 412 LDDCLNGGDFKAMAAVKSLERIFP 435
G KA A +S+ + +P
Sbjct: 65 KKHV---GRSKAQVAKESVLQFYP 85
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMA 425
+ L++G G LG A L GV + L D+ V +SN RQ L+T +D K+
Sbjct: 30 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDI---DRPKSQV 86
Query: 426 AVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485
+ + L ++ P + + + + G L D + DV+ TD
Sbjct: 87 SQQRLTQLNPDI--QLTALQQRLTGEA---------------LKDAVARADVVLDCTDNM 129
Query: 486 ESRWLPTLLCANTNKITITA-ALGFDSFLVMRHGP 519
+R C N ITA A+GF L++ P
Sbjct: 130 ATRQEINAACVALNTPLITASAVGFGGQLMVLTPP 164
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMA 425
+ L++G G LG A L GV + L D+ V +SN RQ L+T +D K+
Sbjct: 32 QVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDI---DRPKSQV 88
Query: 426 AVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485
+ + L ++ P + + + + G L D + DV+ TD
Sbjct: 89 SQQRLTQLNPDI--QLTALQQRLTGEA---------------LKDAVARADVVLDCTDNM 131
Query: 486 ESRWLPTLLCANTNKITITA-ALGFDSFLVMRHGP 519
+R C N ITA A+GF L++ P
Sbjct: 132 ATRQEINAACVALNTPLITASAVGFGGQLMVLTPP 166
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSL 409
L + + LL+G LG ++A+ L+ GV+ +T+LD+ +V +P Q L
Sbjct: 34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFL 81
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLN 417
++ L +K +LG G +G +AR L+ +GV+ + +V + L+ +D+ L
Sbjct: 140 RIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLE 199
Query: 418 GGDFKAMA 425
D +A
Sbjct: 200 KSDIVILA 207
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 324 RCISLAK-SMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARM 382
R I+L K + + TR++ A + + +L L L + L++GAG +G VA+
Sbjct: 129 RAINLGKRAREETRISEGAVSIGSAAV---ELAERELGSLHDKTVLVVGAGEMGKTVAKS 185
Query: 383 LMAWGVRKI 391
L+ GVR +
Sbjct: 186 LVDRGVRAV 194
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/124 (19%), Positives = 51/124 (41%)
Query: 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421
+ + L+LG LG ++A+ ++ GV+ +T+ D V +++ Q T D
Sbjct: 25 MQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGD 84
Query: 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481
A + L P + + + V + L+D ++ + S + F+
Sbjct: 85 VTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSGIRFIS 144
Query: 482 TDTR 485
++TR
Sbjct: 145 SETR 148
>pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
pdb|3NPK|B Chain B, The Crystal Structure Of Geranyltranstransferase From
Campylobacter Jejuni
Length = 291
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 488 RWLPTLLCA--NTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGL 545
R +PTL + T I + AL ++FLV+ H + ++K + + L+ N GL
Sbjct: 92 RGIPTLHKSYDETTAILVGDALNTEAFLVLSHA----HLKDEIKIKLIKTLAF---NAGL 144
Query: 546 NNRDGGQRLGCYF 558
N GQ + C+F
Sbjct: 145 NGXVIGQAIDCFF 157
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 335 TRLAISAADLN-LKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITL 393
T + + AA N LKL++ +LD +S ++ G G+ G + R L+A G K+T+
Sbjct: 167 TAIVVLAAIFNSLKLLKK------SLDEVS---IVVNGGGSAGLSITRKLLAAGATKVTV 217
Query: 394 LDN-GRVAMSNPLRQSLYTLDDC-LNGGDFKAMAAVKSLE--RIFPAVAAEGVVMA 445
+D G + + + + LD + +FK+ +LE IF V+A GV+ A
Sbjct: 218 VDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVSAPGVLKA 273
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAM 401
+ S+ + +++GAG +G +A L+ G IT+LD G + M
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNM 41
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 351 WRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWG 387
W+ LP + S + GAG LG +VA L AWG
Sbjct: 129 WKPLPEYTREEFS---VGIXGAGVLGAKVAESLQAWG 162
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 22/169 (13%)
Query: 377 CQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436
C+ +L+ + + ++D RV + + ++ Y DD G DFK + +LE+ P
Sbjct: 61 CKTGMVLLCGEITSMAMIDYQRV-VRDTIKHIGY--DDSAKGFDFKTCNVLVALEQQSPD 117
Query: 437 VAA-------EGVVMAIP---MPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486
+A E V A M G+ EE C LT ++L+H + + D R
Sbjct: 118 IAQCVHLDRNEEDVGAGDQGLMFGYATDETEE------CMPLT-IVLAHKLNTRMADLRR 170
Query: 487 SRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITH--DVKTEAV 533
S LP L + ++T+ + + +R S+ H D+ EA+
Sbjct: 171 SGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAM 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,216,787
Number of Sequences: 62578
Number of extensions: 703619
Number of successful extensions: 1296
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1213
Number of HSP's gapped (non-prelim): 55
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)