Query 008323
Match_columns 570
No_of_seqs 318 out of 1651
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 22:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2337 Ubiquitin activating E 100.0 1E-145 2E-150 1146.4 37.2 525 13-570 6-533 (669)
2 TIGR01381 E1_like_apg7 E1-like 100.0 3E-134 7E-139 1106.5 50.5 521 17-570 1-529 (664)
3 cd01486 Apg7 Apg7 is an E1-lik 100.0 1.6E-51 3.4E-56 420.9 20.0 190 366-570 1-190 (307)
4 PRK05690 molybdopterin biosynt 100.0 1.5E-32 3.3E-37 277.1 18.4 151 346-516 11-165 (245)
5 TIGR02356 adenyl_thiF thiazole 100.0 1.7E-32 3.8E-37 269.2 16.4 149 347-515 1-153 (202)
6 TIGR02355 moeB molybdopterin s 100.0 9.4E-32 2E-36 270.6 17.9 150 346-515 3-156 (240)
7 PRK07411 hypothetical protein; 100.0 9.2E-32 2E-36 288.2 18.1 151 346-516 17-171 (390)
8 PRK08223 hypothetical protein; 100.0 1.2E-31 2.7E-36 274.3 17.9 155 342-516 4-162 (287)
9 cd00757 ThiF_MoeB_HesA_family 100.0 1.6E-31 3.4E-36 266.8 17.0 150 347-516 1-154 (228)
10 PRK05597 molybdopterin biosynt 100.0 3.6E-31 7.8E-36 280.4 17.3 151 346-516 7-161 (355)
11 PRK07878 molybdopterin biosynt 100.0 1.1E-30 2.3E-35 280.3 18.1 151 346-516 21-175 (392)
12 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.2E-30 2.6E-35 255.3 16.1 150 347-517 3-154 (197)
13 PRK12475 thiamine/molybdopteri 100.0 1.7E-30 3.8E-35 273.4 17.3 153 345-515 2-158 (338)
14 KOG2017 Molybdopterin synthase 100.0 2E-31 4.2E-36 272.0 9.5 156 343-518 42-201 (427)
15 PRK05600 thiamine biosynthesis 100.0 2.1E-30 4.6E-35 275.7 17.5 151 346-516 20-174 (370)
16 PRK08328 hypothetical protein; 100.0 2.6E-30 5.6E-35 258.8 16.7 150 346-515 8-160 (231)
17 cd01485 E1-1_like Ubiquitin ac 100.0 4.6E-30 1E-34 251.3 16.4 153 347-517 1-157 (198)
18 PRK07688 thiamine/molybdopteri 100.0 2.2E-29 4.8E-34 265.1 17.7 154 345-516 2-159 (339)
19 PF00899 ThiF: ThiF family; I 100.0 1.2E-28 2.6E-33 226.4 17.9 133 363-515 1-134 (135)
20 cd01491 Ube1_repeat1 Ubiquitin 100.0 3.2E-29 6.9E-34 257.4 14.8 148 348-519 2-151 (286)
21 cd01484 E1-2_like Ubiquitin ac 100.0 5.3E-29 1.1E-33 249.5 16.0 132 366-515 1-133 (234)
22 PRK08762 molybdopterin biosynt 100.0 1.4E-28 3E-33 262.6 17.9 151 346-516 114-268 (376)
23 COG0476 ThiF Dinucleotide-util 100.0 2.1E-28 4.5E-33 247.8 17.4 152 346-517 9-164 (254)
24 cd01489 Uba2_SUMO Ubiquitin ac 100.0 2.1E-28 4.4E-33 254.2 16.8 133 366-517 1-134 (312)
25 TIGR01408 Ube1 ubiquitin-activ 100.0 2.7E-28 5.8E-33 285.5 16.3 194 308-519 353-565 (1008)
26 cd01488 Uba3_RUB Ubiquitin act 99.9 2.5E-27 5.4E-32 243.9 16.8 129 366-515 1-138 (291)
27 KOG2013 SMT3/SUMO-activating c 99.9 4.3E-28 9.2E-33 255.6 9.2 143 359-520 7-151 (603)
28 PRK14851 hypothetical protein; 99.9 8.3E-27 1.8E-31 263.9 18.0 152 345-516 23-178 (679)
29 cd01493 APPBP1_RUB Ubiquitin a 99.9 9.3E-27 2E-31 251.1 16.9 155 347-519 2-158 (425)
30 PRK14852 hypothetical protein; 99.9 1.4E-26 3E-31 266.2 18.5 154 343-516 310-467 (989)
31 cd01483 E1_enzyme_family Super 99.9 2.7E-26 5.9E-31 212.5 16.3 132 366-517 1-133 (143)
32 cd01490 Ube1_repeat2 Ubiquitin 99.9 2.1E-26 4.5E-31 247.8 17.5 134 366-516 1-141 (435)
33 PRK08644 thiamine biosynthesis 99.9 2.8E-26 6.1E-31 226.9 16.5 139 354-513 18-158 (212)
34 PRK07877 hypothetical protein; 99.9 5.3E-26 1.2E-30 258.1 15.7 140 345-506 87-228 (722)
35 cd00755 YgdL_like Family of ac 99.9 8.9E-26 1.9E-30 225.9 15.2 131 355-505 2-133 (231)
36 PRK15116 sulfur acceptor prote 99.9 1E-25 2.3E-30 229.5 15.4 140 346-505 11-152 (268)
37 TIGR01408 Ube1 ubiquitin-activ 99.9 5.2E-25 1.1E-29 258.0 15.8 150 346-519 5-158 (1008)
38 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.2E-24 2.6E-29 209.0 15.5 128 366-514 1-130 (174)
39 TIGR02354 thiF_fam2 thiamine b 99.9 2.4E-24 5.1E-29 211.4 17.4 138 355-513 12-150 (200)
40 KOG2015 NEDD8-activating compl 99.9 3.5E-25 7.5E-30 224.5 10.6 141 358-519 34-186 (422)
41 TIGR03603 cyclo_dehy_ocin bact 99.9 5.8E-24 1.2E-28 222.2 11.8 135 346-515 53-195 (318)
42 PRK06153 hypothetical protein; 99.9 1.8E-23 4E-28 220.7 14.6 128 359-509 171-301 (393)
43 KOG2012 Ubiquitin activating e 99.9 1.3E-24 2.7E-29 240.7 5.7 192 309-518 364-576 (1013)
44 KOG2014 SMT3/SUMO-activating c 99.9 1.3E-22 2.8E-27 204.8 13.1 165 332-520 1-167 (331)
45 COG1179 Dinucleotide-utilizing 99.9 1.2E-22 2.6E-27 200.6 12.2 140 346-505 11-152 (263)
46 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 1.3E-21 2.8E-26 197.0 13.5 130 363-517 10-153 (244)
47 PTZ00245 ubiquitin activating 99.8 5.4E-21 1.2E-25 190.7 10.7 98 345-446 6-104 (287)
48 KOG2012 Ubiquitin activating e 99.8 2.1E-19 4.6E-24 199.6 10.7 156 340-520 13-170 (1013)
49 KOG2016 NEDD8-activating compl 99.8 3.7E-19 8.1E-24 186.9 9.3 164 346-527 8-175 (523)
50 KOG2336 Molybdopterin biosynth 99.8 9.1E-19 2E-23 175.1 10.6 163 336-519 51-232 (422)
51 KOG2018 Predicted dinucleotide 99.7 2E-17 4.3E-22 167.8 8.7 133 353-505 63-196 (430)
52 TIGR03693 ocin_ThiF_like putat 99.2 1.2E-10 2.6E-15 129.2 14.1 120 359-513 124-246 (637)
53 PF01488 Shikimate_DH: Shikima 98.1 8.6E-06 1.9E-10 75.2 8.5 81 360-487 8-88 (135)
54 COG1748 LYS9 Saccharopine dehy 98.1 1.6E-05 3.5E-10 85.6 11.1 98 365-506 2-99 (389)
55 PRK12549 shikimate 5-dehydroge 98.0 2.4E-05 5.2E-10 81.2 9.1 56 362-439 125-180 (284)
56 PRK12548 shikimate 5-dehydroge 97.6 0.00034 7.5E-09 72.7 10.3 85 362-483 124-208 (289)
57 COG4015 Predicted dinucleotide 97.6 0.00042 9.1E-09 65.7 9.2 117 364-505 18-140 (217)
58 PF03435 Saccharop_dh: Sacchar 97.6 0.00033 7.1E-09 75.3 9.9 96 367-505 1-97 (386)
59 PRK14027 quinate/shikimate deh 97.4 0.00058 1.3E-08 71.0 9.2 36 362-397 125-160 (283)
60 PRK06718 precorrin-2 dehydroge 97.4 0.0012 2.6E-08 65.2 10.2 94 361-505 7-100 (202)
61 PRK12749 quinate/shikimate deh 97.3 0.00088 1.9E-08 69.8 9.0 53 362-433 122-174 (288)
62 TIGR01809 Shik-DH-AROM shikima 97.3 0.00084 1.8E-08 69.6 8.3 35 362-396 123-157 (282)
63 TIGR01470 cysG_Nterm siroheme 97.1 0.0051 1.1E-07 61.0 12.0 94 362-505 7-100 (205)
64 COG0373 HemA Glutamyl-tRNA red 97.1 0.0013 2.9E-08 71.4 8.3 77 361-487 175-251 (414)
65 PF13241 NAD_binding_7: Putati 97.1 0.00083 1.8E-08 59.1 5.4 88 361-505 4-91 (103)
66 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0041 8.9E-08 65.4 11.6 83 362-494 176-258 (311)
67 PRK13940 glutamyl-tRNA reducta 97.1 0.0016 3.5E-08 71.2 8.5 78 361-487 178-255 (414)
68 COG0169 AroE Shikimate 5-dehyd 97.0 0.0014 3E-08 68.2 7.2 51 363-435 125-175 (283)
69 PRK00258 aroE shikimate 5-dehy 97.0 0.0021 4.5E-08 66.4 7.9 36 361-396 120-155 (278)
70 PF03807 F420_oxidored: NADP o 96.8 0.0072 1.6E-07 51.7 8.8 90 366-506 1-94 (96)
71 PRK06719 precorrin-2 dehydroge 96.8 0.01 2.2E-07 56.5 10.5 86 361-499 10-95 (157)
72 COG0569 TrkA K+ transport syst 96.8 0.014 3.1E-07 58.6 11.6 96 365-505 1-98 (225)
73 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0038 8.3E-08 58.9 6.2 98 366-509 1-106 (157)
74 TIGR01035 hemA glutamyl-tRNA r 96.6 0.0064 1.4E-07 66.5 8.6 36 361-396 177-212 (417)
75 PLN00203 glutamyl-tRNA reducta 96.6 0.007 1.5E-07 68.0 9.0 79 362-487 264-342 (519)
76 cd01078 NAD_bind_H4MPT_DH NADP 96.6 0.014 3E-07 56.8 9.8 84 361-486 25-109 (194)
77 cd01065 NAD_bind_Shikimate_DH 96.6 0.0079 1.7E-07 55.7 7.7 35 362-396 17-51 (155)
78 PRK00045 hemA glutamyl-tRNA re 96.4 0.014 3E-07 64.1 9.8 35 362-396 180-214 (423)
79 COG1086 Predicted nucleoside-d 96.4 0.014 3.1E-07 65.3 9.4 87 359-483 245-334 (588)
80 PLN02819 lysine-ketoglutarate 96.4 0.017 3.8E-07 69.5 10.7 99 362-505 567-678 (1042)
81 PRK05562 precorrin-2 dehydroge 96.3 0.032 6.9E-07 56.2 10.5 95 361-505 22-116 (223)
82 cd05291 HicDH_like L-2-hydroxy 96.3 0.017 3.7E-07 60.5 8.9 32 365-396 1-33 (306)
83 TIGR02992 ectoine_eutC ectoine 96.3 0.017 3.7E-07 61.1 9.0 78 363-486 128-206 (326)
84 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.016 3.6E-07 55.7 7.8 35 361-396 41-76 (168)
85 TIGR03882 cyclo_dehyd_2 bacter 96.2 0.0021 4.6E-08 63.1 1.4 53 357-409 98-160 (193)
86 PLN02928 oxidoreductase family 96.1 0.017 3.6E-07 61.9 7.8 36 360-396 155-190 (347)
87 PRK15469 ghrA bifunctional gly 96.1 0.038 8.3E-07 58.3 10.5 93 360-508 132-228 (312)
88 PRK14982 acyl-ACP reductase; P 96.1 0.024 5.3E-07 60.4 8.9 36 361-396 152-189 (340)
89 PRK09242 tropinone reductase; 96.0 0.04 8.6E-07 55.1 10.0 90 362-483 7-97 (257)
90 PRK05854 short chain dehydroge 96.0 0.034 7.3E-07 58.1 9.6 64 360-446 10-74 (313)
91 cd05311 NAD_bind_2_malic_enz N 96.0 0.0093 2E-07 60.0 4.9 38 361-398 22-61 (226)
92 PRK07634 pyrroline-5-carboxyla 95.9 0.073 1.6E-06 53.3 11.4 96 363-509 3-102 (245)
93 PF01113 DapB_N: Dihydrodipico 95.9 0.062 1.3E-06 48.9 9.8 99 366-510 2-102 (124)
94 PRK06197 short chain dehydroge 95.9 0.034 7.3E-07 57.5 9.1 36 360-396 12-48 (306)
95 PRK06141 ornithine cyclodeamin 95.9 0.031 6.6E-07 58.9 8.9 76 363-485 124-200 (314)
96 PRK08618 ornithine cyclodeamin 95.9 0.04 8.6E-07 58.3 9.6 93 363-504 126-219 (325)
97 KOG4169 15-hydroxyprostaglandi 95.9 0.024 5.3E-07 57.0 7.3 87 362-481 3-90 (261)
98 TIGR00518 alaDH alanine dehydr 95.8 0.074 1.6E-06 57.4 11.5 36 361-397 164-199 (370)
99 PRK00094 gpsA NAD(P)H-dependen 95.8 0.05 1.1E-06 56.6 9.8 31 366-397 3-33 (325)
100 PRK11880 pyrroline-5-carboxyla 95.7 0.07 1.5E-06 54.3 10.4 89 365-505 3-93 (267)
101 PRK07062 short chain dehydroge 95.7 0.061 1.3E-06 54.0 9.9 90 362-483 6-96 (265)
102 PRK07340 ornithine cyclodeamin 95.7 0.033 7.2E-07 58.4 8.2 77 362-486 123-200 (304)
103 PRK08291 ectoine utilization p 95.7 0.043 9.3E-07 58.2 9.1 78 363-486 131-209 (330)
104 PRK05476 S-adenosyl-L-homocyst 95.7 0.048 1E-06 59.9 9.6 36 361-397 209-244 (425)
105 PRK07063 short chain dehydroge 95.7 0.057 1.2E-06 54.0 9.5 63 361-446 4-67 (260)
106 PF02719 Polysacc_synt_2: Poly 95.7 0.026 5.7E-07 59.0 7.0 80 367-484 1-87 (293)
107 TIGR01915 npdG NADPH-dependent 95.5 0.11 2.3E-06 51.7 10.6 99 366-509 2-104 (219)
108 PRK07831 short chain dehydroge 95.5 0.069 1.5E-06 53.6 9.4 36 360-396 13-50 (262)
109 PRK12491 pyrroline-5-carboxyla 95.5 0.1 2.2E-06 54.0 10.8 93 364-508 2-99 (272)
110 PRK07231 fabG 3-ketoacyl-(acyl 95.5 0.062 1.4E-06 53.0 8.9 35 362-397 3-38 (251)
111 PRK00066 ldh L-lactate dehydro 95.5 0.065 1.4E-06 56.6 9.4 34 363-396 5-39 (315)
112 PRK14106 murD UDP-N-acetylmura 95.5 0.067 1.4E-06 58.6 9.7 95 362-504 3-97 (450)
113 TIGR02853 spore_dpaA dipicolin 95.4 0.051 1.1E-06 56.7 8.2 35 361-396 148-182 (287)
114 PRK06522 2-dehydropantoate 2-r 95.4 0.099 2.1E-06 53.8 10.3 30 366-396 2-31 (304)
115 PRK05875 short chain dehydroge 95.4 0.1 2.2E-06 52.7 10.2 34 362-396 5-39 (276)
116 PRK07680 late competence prote 95.4 0.12 2.6E-06 53.0 10.8 31 366-396 2-35 (273)
117 PRK06476 pyrroline-5-carboxyla 95.4 0.098 2.1E-06 53.2 9.9 23 366-388 2-24 (258)
118 PRK14619 NAD(P)H-dependent gly 95.3 0.088 1.9E-06 55.1 9.7 33 364-397 4-36 (308)
119 TIGR00507 aroE shikimate 5-deh 95.3 0.047 1E-06 56.1 7.5 33 363-396 116-148 (270)
120 PRK06130 3-hydroxybutyryl-CoA 95.3 0.078 1.7E-06 55.3 9.3 31 365-396 5-35 (311)
121 PF00056 Ldh_1_N: lactate/mala 95.3 0.031 6.6E-07 52.1 5.4 75 365-484 1-79 (141)
122 KOG0069 Glyoxylate/hydroxypyru 95.2 0.074 1.6E-06 56.6 8.7 95 360-509 158-256 (336)
123 PRK13403 ketol-acid reductoiso 95.2 0.13 2.7E-06 54.7 10.3 38 357-395 9-46 (335)
124 PF00106 adh_short: short chai 95.2 0.11 2.3E-06 48.2 8.9 90 365-485 1-91 (167)
125 TIGR00936 ahcY adenosylhomocys 95.2 0.097 2.1E-06 57.2 9.8 36 362-398 193-228 (406)
126 COG0111 SerA Phosphoglycerate 95.2 0.049 1.1E-06 57.9 7.3 94 360-508 138-235 (324)
127 PRK04148 hypothetical protein; 95.2 0.16 3.4E-06 47.3 9.7 99 363-511 16-114 (134)
128 PF03949 Malic_M: Malic enzyme 95.2 0.068 1.5E-06 54.8 8.0 39 360-398 21-69 (255)
129 PRK07574 formate dehydrogenase 95.2 0.087 1.9E-06 57.2 9.3 36 360-396 188-223 (385)
130 PRK08410 2-hydroxyacid dehydro 95.2 0.059 1.3E-06 56.8 7.8 36 360-396 141-176 (311)
131 PRK09186 flagellin modificatio 95.2 0.13 2.7E-06 51.2 9.8 33 362-395 2-35 (256)
132 PRK13243 glyoxylate reductase; 95.1 0.056 1.2E-06 57.5 7.6 36 360-396 146-181 (333)
133 PRK08251 short chain dehydroge 95.1 0.13 2.9E-06 50.9 9.8 60 364-446 2-62 (248)
134 PLN02780 ketoreductase/ oxidor 95.1 0.14 3.1E-06 53.8 10.5 61 363-446 52-113 (320)
135 PRK07523 gluconate 5-dehydroge 95.1 0.12 2.5E-06 51.6 9.4 35 361-396 7-42 (255)
136 COG1648 CysG Siroheme synthase 95.1 0.045 9.8E-07 54.6 6.3 95 361-505 9-103 (210)
137 PF03446 NAD_binding_2: NAD bi 95.1 0.097 2.1E-06 49.6 8.2 117 365-506 2-119 (163)
138 PRK00676 hemA glutamyl-tRNA re 95.0 0.081 1.8E-06 56.5 8.4 36 361-396 171-206 (338)
139 PRK14618 NAD(P)H-dependent gly 95.0 0.15 3.3E-06 53.6 10.3 31 365-396 5-35 (328)
140 PF02558 ApbA: Ketopantoate re 95.0 0.081 1.8E-06 48.8 7.3 29 367-396 1-29 (151)
141 PLN02688 pyrroline-5-carboxyla 95.0 0.21 4.6E-06 50.7 11.0 29 366-394 2-33 (266)
142 cd05290 LDH_3 A subgroup of L- 94.9 0.11 2.3E-06 54.8 8.9 31 366-396 1-32 (307)
143 cd00401 AdoHcyase S-adenosyl-L 94.9 0.14 3.1E-06 56.1 10.1 36 361-397 199-234 (413)
144 PRK07679 pyrroline-5-carboxyla 94.9 0.26 5.6E-06 50.8 11.5 26 363-388 2-27 (279)
145 cd05312 NAD_bind_1_malic_enz N 94.9 0.19 4E-06 52.3 10.3 40 360-399 21-70 (279)
146 PTZ00345 glycerol-3-phosphate 94.9 0.14 3.1E-06 55.3 9.7 114 363-510 10-133 (365)
147 PRK12439 NAD(P)H-dependent gly 94.8 0.21 4.6E-06 53.2 10.9 106 365-510 8-115 (341)
148 PRK06487 glycerate dehydrogena 94.8 0.077 1.7E-06 56.1 7.5 36 360-396 144-179 (317)
149 PRK08217 fabG 3-ketoacyl-(acyl 94.8 0.15 3.3E-06 50.2 9.3 34 362-396 3-37 (253)
150 PRK06194 hypothetical protein; 94.8 0.18 3.8E-06 51.3 9.9 34 362-396 4-38 (287)
151 PLN03209 translocon at the inn 94.8 0.35 7.6E-06 55.1 12.9 36 360-396 76-112 (576)
152 PRK06928 pyrroline-5-carboxyla 94.7 0.28 6E-06 50.7 11.2 31 366-396 3-36 (277)
153 PRK05866 short chain dehydroge 94.7 0.18 4E-06 52.1 9.9 36 360-396 36-72 (293)
154 cd05191 NAD_bind_amino_acid_DH 94.7 0.058 1.3E-06 45.7 5.1 36 361-396 20-55 (86)
155 PF02254 TrkA_N: TrkA-N domain 94.7 0.31 6.6E-06 42.9 9.9 86 367-499 1-87 (116)
156 PTZ00075 Adenosylhomocysteinas 94.6 0.13 2.7E-06 57.3 8.8 37 360-397 250-286 (476)
157 PRK14620 NAD(P)H-dependent gly 94.6 0.27 5.8E-06 51.7 11.0 30 366-396 2-31 (326)
158 TIGR03589 PseB UDP-N-acetylglu 94.6 0.2 4.3E-06 52.6 10.0 36 362-397 2-39 (324)
159 PRK08339 short chain dehydroge 94.6 0.2 4.4E-06 50.6 9.7 34 362-396 6-40 (263)
160 PRK12921 2-dehydropantoate 2-r 94.6 0.15 3.3E-06 52.6 8.9 30 366-396 2-31 (305)
161 PRK13394 3-hydroxybutyrate deh 94.6 0.24 5.1E-06 49.3 10.0 35 361-396 4-39 (262)
162 PRK08293 3-hydroxybutyryl-CoA 94.6 0.23 4.9E-06 51.4 10.1 32 365-397 4-35 (287)
163 TIGR03376 glycerol3P_DH glycer 94.5 0.14 3.1E-06 54.7 8.7 111 366-510 1-120 (342)
164 PRK10637 cysG siroheme synthas 94.5 0.16 3.4E-06 56.4 9.4 95 361-505 9-103 (457)
165 PRK12826 3-ketoacyl-(acyl-carr 94.5 0.22 4.8E-06 49.0 9.6 36 361-397 3-39 (251)
166 PRK06949 short chain dehydroge 94.5 0.22 4.7E-06 49.5 9.5 34 362-396 7-41 (258)
167 PRK06932 glycerate dehydrogena 94.5 0.094 2E-06 55.4 7.1 35 360-395 143-177 (314)
168 PLN03139 formate dehydrogenase 94.5 0.14 3E-06 55.7 8.5 36 360-396 195-230 (386)
169 PF10727 Rossmann-like: Rossma 94.4 0.096 2.1E-06 48.2 6.2 92 362-505 8-103 (127)
170 PF00070 Pyr_redox: Pyridine n 94.4 0.079 1.7E-06 44.0 5.2 32 366-398 1-32 (80)
171 PRK08277 D-mannonate oxidoredu 94.4 0.25 5.4E-06 50.0 9.8 36 361-397 7-43 (278)
172 cd05293 LDH_1 A subgroup of L- 94.3 0.15 3.3E-06 53.8 8.3 33 364-396 3-36 (312)
173 PRK12480 D-lactate dehydrogena 94.3 0.27 5.8E-06 52.3 10.2 36 360-396 142-177 (330)
174 PRK12384 sorbitol-6-phosphate 94.3 0.29 6.3E-06 48.8 10.0 33 364-397 2-35 (259)
175 TIGR00465 ilvC ketol-acid redu 94.3 0.32 6.9E-06 51.5 10.7 31 362-393 1-31 (314)
176 PRK05708 2-dehydropantoate 2-r 94.3 0.25 5.4E-06 51.8 9.8 32 365-397 3-34 (305)
177 PLN02427 UDP-apiose/xylose syn 94.3 0.31 6.7E-06 52.2 10.8 40 357-396 7-47 (386)
178 PRK05479 ketol-acid reductoiso 94.2 0.29 6.3E-06 52.1 10.2 37 358-395 11-47 (330)
179 PRK12429 3-hydroxybutyrate deh 94.2 0.27 5.8E-06 48.7 9.4 34 362-396 2-36 (258)
180 PRK05867 short chain dehydroge 94.2 0.22 4.8E-06 49.6 8.9 34 362-396 7-41 (253)
181 PRK07478 short chain dehydroge 94.2 0.23 5E-06 49.4 8.9 35 361-396 3-38 (254)
182 PRK11790 D-3-phosphoglycerate 94.1 0.17 3.6E-06 55.5 8.4 36 360-396 147-182 (409)
183 PRK05876 short chain dehydroge 94.1 0.26 5.6E-06 50.4 9.3 34 362-396 4-38 (275)
184 PRK07576 short chain dehydroge 94.1 0.23 5E-06 50.2 8.8 37 360-397 5-42 (264)
185 PRK12939 short chain dehydroge 94.1 0.28 6.1E-06 48.3 9.3 34 362-396 5-39 (250)
186 PRK15409 bifunctional glyoxyla 94.1 0.13 2.9E-06 54.4 7.3 35 360-395 141-176 (323)
187 PTZ00142 6-phosphogluconate de 94.1 0.37 8E-06 53.8 11.0 119 365-505 2-125 (470)
188 PF01118 Semialdhyde_dh: Semia 94.0 0.36 7.9E-06 43.4 9.0 33 472-505 64-96 (121)
189 PRK07502 cyclohexadienyl dehyd 94.0 0.22 4.7E-06 52.0 8.7 33 364-396 6-39 (307)
190 TIGR01832 kduD 2-deoxy-D-gluco 94.0 0.26 5.6E-06 48.8 8.8 34 362-396 3-37 (248)
191 PRK15438 erythronate-4-phospha 93.9 0.13 2.8E-06 55.8 6.8 36 360-396 112-147 (378)
192 PF13460 NAD_binding_10: NADH( 93.8 0.72 1.6E-05 43.5 11.2 86 367-501 1-91 (183)
193 PRK08213 gluconate 5-dehydroge 93.8 0.31 6.8E-06 48.6 9.1 37 359-396 7-44 (259)
194 PRK06172 short chain dehydroge 93.8 0.3 6.5E-06 48.5 8.9 34 362-396 5-39 (253)
195 PRK07326 short chain dehydroge 93.8 0.37 8.1E-06 47.2 9.5 34 362-396 4-38 (237)
196 COG0300 DltE Short-chain dehyd 93.8 0.35 7.6E-06 50.0 9.5 61 362-446 4-65 (265)
197 PRK09260 3-hydroxybutyryl-CoA 93.8 0.32 6.9E-06 50.3 9.3 33 365-398 2-34 (288)
198 PRK13304 L-aspartate dehydroge 93.7 0.32 6.9E-06 50.0 9.2 33 365-397 2-36 (265)
199 PF02826 2-Hacid_dh_C: D-isome 93.7 0.095 2.1E-06 50.5 5.0 37 359-396 31-67 (178)
200 PRK06139 short chain dehydroge 93.7 0.27 5.9E-06 52.0 8.9 35 361-396 4-39 (330)
201 TIGR03206 benzo_BadH 2-hydroxy 93.7 0.33 7.2E-06 47.9 8.9 34 362-396 1-35 (250)
202 PRK06125 short chain dehydroge 93.7 0.41 9E-06 47.9 9.7 35 362-397 5-40 (259)
203 PRK06138 short chain dehydroge 93.7 0.39 8.5E-06 47.4 9.4 34 362-396 3-37 (252)
204 COG1893 ApbA Ketopantoate redu 93.7 0.32 7E-06 51.2 9.2 29 365-394 1-29 (307)
205 cd00300 LDH_like L-lactate deh 93.6 0.25 5.5E-06 51.7 8.4 30 367-396 1-31 (300)
206 PRK01438 murD UDP-N-acetylmura 93.6 0.35 7.6E-06 53.6 9.9 36 361-397 13-48 (480)
207 PRK08265 short chain dehydroge 93.6 0.38 8.2E-06 48.4 9.3 36 361-397 3-39 (261)
208 PLN02253 xanthoxin dehydrogena 93.6 0.49 1.1E-05 47.9 10.1 36 360-396 14-50 (280)
209 PLN02602 lactate dehydrogenase 93.6 0.24 5.1E-06 53.3 8.1 32 365-396 38-70 (350)
210 PRK00048 dihydrodipicolinate r 93.5 0.5 1.1E-05 48.4 10.1 33 365-397 2-36 (257)
211 PRK06199 ornithine cyclodeamin 93.5 0.32 6.9E-06 52.8 9.1 78 364-486 155-235 (379)
212 PRK09496 trkA potassium transp 93.5 0.65 1.4E-05 50.7 11.7 87 366-498 2-89 (453)
213 PRK07666 fabG 3-ketoacyl-(acyl 93.5 0.53 1.1E-05 46.3 10.0 36 361-397 4-40 (239)
214 PRK08229 2-dehydropantoate 2-r 93.5 0.27 5.8E-06 51.8 8.3 32 365-397 3-34 (341)
215 PRK06046 alanine dehydrogenase 93.5 0.3 6.5E-06 51.7 8.7 76 364-486 129-205 (326)
216 PRK06940 short chain dehydroge 93.5 0.48 1E-05 48.3 9.9 31 364-396 2-32 (275)
217 PRK09496 trkA potassium transp 93.4 0.81 1.7E-05 50.0 12.3 96 362-502 229-325 (453)
218 PRK12550 shikimate 5-dehydroge 93.4 0.11 2.4E-06 53.7 5.2 34 364-397 122-155 (272)
219 PRK08589 short chain dehydroge 93.4 0.45 9.7E-06 48.3 9.5 35 361-396 3-38 (272)
220 PRK06914 short chain dehydroge 93.4 0.44 9.5E-06 48.2 9.4 33 363-396 2-35 (280)
221 PRK06198 short chain dehydroge 93.4 0.38 8.3E-06 47.9 8.9 37 361-397 3-40 (260)
222 PRK07109 short chain dehydroge 93.4 0.4 8.7E-06 50.7 9.4 35 361-396 5-40 (334)
223 PRK06196 oxidoreductase; Provi 93.3 0.31 6.7E-06 50.7 8.4 34 362-396 24-58 (315)
224 PRK08063 enoyl-(acyl carrier p 93.3 0.34 7.3E-06 47.9 8.3 30 362-391 2-32 (250)
225 PLN02240 UDP-glucose 4-epimera 93.3 0.48 1E-05 49.6 9.8 34 362-396 3-37 (352)
226 PRK05872 short chain dehydroge 93.3 0.38 8.3E-06 49.6 8.9 35 361-396 6-41 (296)
227 PLN02306 hydroxypyruvate reduc 93.3 0.25 5.5E-06 53.7 7.8 36 360-396 161-197 (386)
228 PRK07453 protochlorophyllide o 93.2 0.45 9.7E-06 49.6 9.5 34 362-396 4-38 (322)
229 PRK07035 short chain dehydroge 93.2 0.43 9.3E-06 47.4 8.9 35 361-396 5-40 (252)
230 PRK05565 fabG 3-ketoacyl-(acyl 93.2 0.56 1.2E-05 46.0 9.6 31 362-392 3-34 (247)
231 PF00670 AdoHcyase_NAD: S-aden 93.2 0.34 7.4E-06 46.5 7.7 39 360-399 19-57 (162)
232 PRK06500 short chain dehydroge 93.2 0.46 1E-05 46.8 9.0 35 361-396 3-38 (249)
233 PRK05717 oxidoreductase; Valid 93.1 0.44 9.6E-06 47.5 8.9 35 362-397 8-43 (255)
234 PRK07774 short chain dehydroge 93.1 0.51 1.1E-05 46.6 9.3 35 361-396 3-38 (250)
235 PRK06181 short chain dehydroge 93.1 0.63 1.4E-05 46.5 10.0 31 365-396 2-33 (263)
236 PRK08303 short chain dehydroge 93.1 0.61 1.3E-05 48.7 10.2 36 361-397 5-41 (305)
237 PRK12744 short chain dehydroge 93.1 0.53 1.1E-05 47.0 9.4 33 361-393 5-38 (257)
238 PRK06113 7-alpha-hydroxysteroi 93.1 0.54 1.2E-05 46.9 9.5 34 361-395 8-42 (255)
239 PTZ00325 malate dehydrogenase; 93.1 0.28 6.1E-06 52.1 7.6 35 362-396 6-42 (321)
240 PF01408 GFO_IDH_MocA: Oxidore 93.0 0.59 1.3E-05 41.1 8.6 86 366-504 2-91 (120)
241 PRK07531 bifunctional 3-hydrox 93.0 0.57 1.2E-05 52.6 10.4 32 365-397 5-36 (495)
242 PRK13302 putative L-aspartate 93.0 0.51 1.1E-05 48.8 9.3 35 363-397 5-41 (271)
243 cd00762 NAD_bind_malic_enz NAD 93.0 0.091 2E-06 53.9 3.7 40 360-399 21-70 (254)
244 PRK07814 short chain dehydroge 93.0 0.54 1.2E-05 47.3 9.3 34 362-396 8-42 (263)
245 PRK08594 enoyl-(acyl carrier p 93.0 0.45 9.8E-06 48.0 8.7 34 362-396 5-41 (257)
246 PRK06057 short chain dehydroge 92.9 0.39 8.4E-06 47.9 8.2 36 361-397 4-40 (255)
247 cd05292 LDH_2 A subgroup of L- 92.9 0.37 8.1E-06 50.6 8.3 32 366-397 2-34 (308)
248 PRK08945 putative oxoacyl-(acy 92.9 0.6 1.3E-05 46.3 9.5 37 360-397 8-45 (247)
249 PRK07102 short chain dehydroge 92.8 0.62 1.3E-05 46.0 9.4 32 365-397 2-34 (243)
250 PF02423 OCD_Mu_crystall: Orni 92.8 0.34 7.3E-06 51.1 7.7 76 364-486 128-204 (313)
251 PRK05855 short chain dehydroge 92.8 0.5 1.1E-05 52.6 9.6 36 360-396 311-347 (582)
252 COG2085 Predicted dinucleotide 92.8 0.78 1.7E-05 45.8 9.7 93 365-508 2-95 (211)
253 PRK07067 sorbitol dehydrogenas 92.7 0.57 1.2E-05 46.7 9.0 36 362-398 4-40 (257)
254 PTZ00082 L-lactate dehydrogena 92.7 0.16 3.5E-06 53.8 5.3 37 362-398 4-40 (321)
255 PRK07890 short chain dehydroge 92.7 0.61 1.3E-05 46.3 9.2 34 362-396 3-37 (258)
256 PTZ00117 malate dehydrogenase; 92.7 0.16 3.6E-06 53.6 5.3 37 362-398 3-39 (319)
257 cd02201 FtsZ_type1 FtsZ is a G 92.7 0.97 2.1E-05 47.5 11.0 34 365-398 1-36 (304)
258 KOG1205 Predicted dehydrogenas 92.6 0.61 1.3E-05 48.6 9.3 94 356-481 4-98 (282)
259 PRK09599 6-phosphogluconate de 92.6 0.48 1E-05 49.4 8.6 115 366-505 2-118 (301)
260 PRK08085 gluconate 5-dehydroge 92.6 0.56 1.2E-05 46.7 8.8 35 361-396 6-41 (254)
261 PRK06128 oxidoreductase; Provi 92.6 0.68 1.5E-05 47.8 9.6 34 360-394 51-85 (300)
262 PRK12748 3-ketoacyl-(acyl-carr 92.6 0.67 1.4E-05 46.3 9.3 36 362-398 3-41 (256)
263 PRK06079 enoyl-(acyl carrier p 92.5 0.53 1.2E-05 47.2 8.5 35 361-396 4-41 (252)
264 KOG1201 Hydroxysteroid 17-beta 92.5 0.64 1.4E-05 48.7 9.1 92 358-454 32-131 (300)
265 PRK07097 gluconate 5-dehydroge 92.5 0.64 1.4E-05 46.7 9.1 35 361-396 7-42 (265)
266 PRK12859 3-ketoacyl-(acyl-carr 92.5 0.79 1.7E-05 45.9 9.7 35 360-395 2-39 (256)
267 PLN02852 ferredoxin-NADP+ redu 92.5 0.53 1.2E-05 52.8 9.2 43 363-407 25-69 (491)
268 PRK12937 short chain dehydroge 92.5 0.53 1.1E-05 46.3 8.3 31 362-393 3-34 (245)
269 PRK06129 3-hydroxyacyl-CoA deh 92.5 0.32 7E-06 50.8 7.1 33 365-398 3-35 (308)
270 PRK07066 3-hydroxybutyryl-CoA 92.5 0.2 4.2E-06 53.3 5.5 33 365-398 8-40 (321)
271 COG1052 LdhA Lactate dehydroge 92.4 0.32 6.9E-06 51.7 7.0 93 360-508 142-238 (324)
272 PRK07024 short chain dehydroge 92.4 0.68 1.5E-05 46.3 9.1 33 364-397 2-35 (257)
273 PLN00106 malate dehydrogenase 92.4 0.3 6.5E-06 51.9 6.7 35 364-398 18-54 (323)
274 PRK07819 3-hydroxybutyryl-CoA 92.4 0.12 2.7E-06 53.6 3.8 33 365-398 6-38 (286)
275 PRK06124 gluconate 5-dehydroge 92.3 0.72 1.6E-05 45.9 9.2 36 361-397 8-44 (256)
276 PRK06935 2-deoxy-D-gluconate 3 92.3 0.81 1.8E-05 45.7 9.6 36 361-397 12-48 (258)
277 PRK12746 short chain dehydroge 92.3 0.68 1.5E-05 45.9 8.9 30 361-390 3-33 (254)
278 PRK08267 short chain dehydroge 92.3 0.65 1.4E-05 46.4 8.8 31 365-396 2-33 (260)
279 cd01075 NAD_bind_Leu_Phe_Val_D 92.3 0.18 3.9E-06 49.7 4.7 37 360-397 24-60 (200)
280 PRK06407 ornithine cyclodeamin 92.3 0.54 1.2E-05 49.4 8.4 78 363-486 116-194 (301)
281 PRK05653 fabG 3-ketoacyl-(acyl 92.2 0.74 1.6E-05 44.9 9.0 35 362-397 3-38 (246)
282 TIGR02371 ala_DH_arch alanine 92.2 0.59 1.3E-05 49.6 8.7 76 364-486 128-204 (325)
283 PTZ00431 pyrroline carboxylate 92.2 1.1 2.3E-05 45.9 10.3 34 363-396 2-38 (260)
284 PRK07074 short chain dehydroge 92.1 0.94 2E-05 45.1 9.7 32 364-396 2-34 (257)
285 PRK07904 short chain dehydroge 92.1 1.2 2.7E-05 44.7 10.6 33 364-396 8-41 (253)
286 PRK07825 short chain dehydroge 92.1 0.56 1.2E-05 47.3 8.1 34 362-396 3-37 (273)
287 PTZ00188 adrenodoxin reductase 92.1 0.77 1.7E-05 51.5 9.7 97 363-485 38-137 (506)
288 cd00650 LDH_MDH_like NAD-depen 92.0 0.38 8.1E-06 49.2 6.8 31 367-397 1-35 (263)
289 PRK06545 prephenate dehydrogen 92.0 0.78 1.7E-05 49.2 9.5 31 365-396 1-31 (359)
290 TIGR00065 ftsZ cell division p 92.0 1.1 2.5E-05 48.1 10.6 36 363-398 16-53 (349)
291 PRK08416 7-alpha-hydroxysteroi 92.0 0.68 1.5E-05 46.5 8.5 34 360-394 4-38 (260)
292 PRK07984 enoyl-(acyl carrier p 92.0 0.73 1.6E-05 46.9 8.8 35 362-397 4-41 (262)
293 PRK07589 ornithine cyclodeamin 92.0 0.64 1.4E-05 49.9 8.7 76 364-486 129-205 (346)
294 PRK12367 short chain dehydroge 91.9 0.67 1.4E-05 46.8 8.4 40 357-397 7-47 (245)
295 PF02629 CoA_binding: CoA bind 91.9 1.3 2.7E-05 38.4 9.0 92 363-506 2-94 (96)
296 PRK05786 fabG 3-ketoacyl-(acyl 91.9 0.91 2E-05 44.5 9.2 34 362-396 3-37 (238)
297 PRK07791 short chain dehydroge 91.9 0.88 1.9E-05 46.7 9.4 35 361-396 3-38 (286)
298 PRK08655 prephenate dehydrogen 91.9 1.1 2.4E-05 49.5 10.7 30 366-396 2-32 (437)
299 PRK12829 short chain dehydroge 91.9 0.73 1.6E-05 45.8 8.6 35 361-396 8-43 (264)
300 PRK11559 garR tartronate semia 91.8 0.9 1.9E-05 47.0 9.4 32 365-397 3-34 (296)
301 TIGR03325 BphB_TodD cis-2,3-di 91.8 0.76 1.6E-05 46.1 8.7 35 362-397 3-38 (262)
302 PRK12828 short chain dehydroge 91.8 0.87 1.9E-05 44.3 8.9 36 361-397 4-40 (239)
303 TIGR01759 MalateDH-SF1 malate 91.8 0.49 1.1E-05 50.3 7.5 33 364-396 3-42 (323)
304 PLN02989 cinnamyl-alcohol dehy 91.8 1.1 2.3E-05 46.5 10.0 32 364-396 5-37 (325)
305 TIGR00872 gnd_rel 6-phosphoglu 91.7 0.57 1.2E-05 48.9 7.9 32 366-398 2-33 (298)
306 PRK12938 acetyacetyl-CoA reduc 91.7 0.8 1.7E-05 45.2 8.6 31 362-392 1-32 (246)
307 PRK06720 hypothetical protein; 91.7 0.99 2.1E-05 43.3 8.9 35 362-397 14-49 (169)
308 TIGR02622 CDP_4_6_dhtase CDP-g 91.7 0.83 1.8E-05 48.1 9.2 35 362-397 2-37 (349)
309 PRK06841 short chain dehydroge 91.6 0.97 2.1E-05 44.8 9.2 34 362-396 13-47 (255)
310 PRK12827 short chain dehydroge 91.6 1 2.2E-05 44.2 9.1 34 362-396 4-38 (249)
311 PRK07792 fabG 3-ketoacyl-(acyl 91.6 1.1 2.4E-05 46.5 9.8 36 360-396 8-44 (306)
312 PRK07806 short chain dehydroge 91.5 1.1 2.5E-05 44.1 9.5 34 361-395 3-37 (248)
313 cd01337 MDH_glyoxysomal_mitoch 91.5 0.46 1E-05 50.2 7.0 32 366-397 2-35 (310)
314 COG0281 SfcA Malic enzyme [Ene 91.5 0.21 4.6E-06 54.4 4.4 40 360-399 195-236 (432)
315 PRK08936 glucose-1-dehydrogena 91.5 1.1 2.4E-05 44.8 9.4 34 361-395 4-38 (261)
316 PRK03562 glutathione-regulated 91.3 1.4 3.1E-05 50.8 11.2 89 364-499 400-489 (621)
317 cd01338 MDH_choloroplast_like 91.3 0.42 9E-06 50.7 6.4 33 364-396 2-41 (322)
318 TIGR02632 RhaD_aldol-ADH rhamn 91.3 1 2.2E-05 52.4 10.2 34 362-396 412-446 (676)
319 PRK09072 short chain dehydroge 91.3 0.96 2.1E-05 45.3 8.8 34 362-396 3-37 (263)
320 PRK08862 short chain dehydroge 91.3 0.93 2E-05 45.1 8.5 34 362-396 3-37 (227)
321 PRK08628 short chain dehydroge 91.3 0.97 2.1E-05 45.0 8.7 35 361-396 4-39 (258)
322 TIGR03026 NDP-sugDHase nucleot 91.2 1.3 2.8E-05 48.4 10.3 39 366-405 2-40 (411)
323 PRK06114 short chain dehydroge 91.2 1.4 3E-05 44.0 9.8 35 361-396 5-40 (254)
324 PRK08703 short chain dehydroge 91.2 1.2 2.5E-05 44.0 9.1 35 362-397 4-39 (239)
325 PRK08643 acetoin reductase; Va 91.2 1.1 2.5E-05 44.4 9.2 32 364-396 2-34 (256)
326 PRK12823 benD 1,6-dihydroxycyc 91.2 1.2 2.6E-05 44.4 9.3 36 360-396 4-40 (260)
327 PRK07889 enoyl-(acyl carrier p 91.2 0.66 1.4E-05 46.7 7.5 36 361-397 4-42 (256)
328 PRK08226 short chain dehydroge 91.2 1.1 2.4E-05 44.8 9.0 36 361-397 3-39 (263)
329 TIGR01757 Malate-DH_plant mala 91.2 0.8 1.7E-05 49.9 8.5 79 364-484 44-130 (387)
330 PRK15181 Vi polysaccharide bio 91.1 1.1 2.5E-05 47.2 9.6 36 361-397 12-48 (348)
331 PRK07677 short chain dehydroge 91.1 1.2 2.6E-05 44.4 9.2 33 364-397 1-34 (252)
332 PRK08324 short chain dehydroge 91.1 1 2.3E-05 52.4 9.9 34 362-396 420-454 (681)
333 PRK07985 oxidoreductase; Provi 91.1 1.3 2.7E-05 45.8 9.6 34 361-395 46-80 (294)
334 PLN02896 cinnamyl-alcohol dehy 91.0 1.4 3E-05 46.6 10.0 34 362-396 8-42 (353)
335 PRK12825 fabG 3-ketoacyl-(acyl 90.9 1.1 2.4E-05 43.7 8.6 29 362-390 4-33 (249)
336 cd00704 MDH Malate dehydrogena 90.9 0.3 6.6E-06 51.8 4.9 33 365-397 1-40 (323)
337 PRK12481 2-deoxy-D-gluconate 3 90.8 1.2 2.5E-05 44.6 8.9 34 362-396 6-40 (251)
338 TIGR00036 dapB dihydrodipicoli 90.8 1.5 3.2E-05 45.2 9.8 31 365-395 2-34 (266)
339 PRK08340 glucose-1-dehydrogena 90.8 1.1 2.4E-05 44.9 8.7 30 366-396 2-32 (259)
340 PRK08278 short chain dehydroge 90.8 1.6 3.4E-05 44.4 9.9 35 362-397 4-39 (273)
341 PRK02006 murD UDP-N-acetylmura 90.8 0.99 2.1E-05 50.4 9.1 35 362-397 5-39 (498)
342 TIGR01505 tartro_sem_red 2-hyd 90.8 0.68 1.5E-05 47.9 7.2 31 366-397 1-31 (291)
343 PLN02662 cinnamyl-alcohol dehy 90.8 1.3 2.9E-05 45.5 9.5 33 364-397 4-37 (322)
344 PF02737 3HCDH_N: 3-hydroxyacy 90.8 0.36 7.8E-06 46.8 4.9 33 366-399 1-33 (180)
345 cd05211 NAD_bind_Glu_Leu_Phe_V 90.7 0.35 7.7E-06 48.4 4.9 39 360-398 19-57 (217)
346 PRK08993 2-deoxy-D-gluconate 3 90.7 1.3 2.8E-05 44.3 9.0 35 361-396 7-42 (253)
347 PRK07454 short chain dehydroge 90.7 1.3 2.9E-05 43.5 9.0 32 364-396 6-38 (241)
348 cd01076 NAD_bind_1_Glu_DH NAD( 90.7 1.7 3.7E-05 43.9 9.8 38 360-397 27-64 (227)
349 PRK02705 murD UDP-N-acetylmura 90.6 1.5 3.2E-05 48.3 10.1 32 365-397 1-32 (459)
350 TIGR01850 argC N-acetyl-gamma- 90.6 0.98 2.1E-05 48.3 8.5 101 365-510 1-105 (346)
351 PRK07060 short chain dehydroge 90.6 1.3 2.8E-05 43.5 8.8 34 362-396 7-41 (245)
352 TIGR01772 MDH_euk_gproteo mala 90.6 0.47 1E-05 50.2 5.9 33 366-398 1-35 (312)
353 PRK13018 cell division protein 90.6 2.1 4.5E-05 46.6 10.9 39 360-398 24-64 (378)
354 PRK10538 malonic semialdehyde 90.5 1.3 2.9E-05 43.9 8.9 30 366-396 2-32 (248)
355 PRK12935 acetoacetyl-CoA reduc 90.5 1.7 3.6E-05 43.0 9.5 29 362-390 4-33 (247)
356 PRK02472 murD UDP-N-acetylmura 90.5 1.2 2.6E-05 48.7 9.3 35 362-397 3-37 (447)
357 PRK06270 homoserine dehydrogen 90.5 1.4 3E-05 47.1 9.4 22 365-386 3-24 (341)
358 PRK07201 short chain dehydroge 90.4 1.3 2.9E-05 50.6 10.0 36 360-396 367-403 (657)
359 PRK06200 2,3-dihydroxy-2,3-dih 90.4 1.1 2.5E-05 44.8 8.4 35 362-397 4-39 (263)
360 PF05368 NmrA: NmrA-like famil 90.4 3 6.5E-05 41.1 11.2 92 367-503 1-98 (233)
361 PRK06823 ornithine cyclodeamin 90.4 1.1 2.4E-05 47.4 8.6 77 363-486 127-204 (315)
362 PLN02520 bifunctional 3-dehydr 90.3 0.34 7.5E-06 54.8 5.0 35 362-397 377-411 (529)
363 PRK07370 enoyl-(acyl carrier p 90.3 1.5 3.3E-05 44.1 9.2 33 362-395 4-39 (258)
364 TIGR02415 23BDH acetoin reduct 90.3 1.8 3.8E-05 42.9 9.5 31 365-396 1-32 (254)
365 PRK12769 putative oxidoreducta 90.3 1.1 2.4E-05 51.9 9.2 34 363-397 326-359 (654)
366 COG1063 Tdh Threonine dehydrog 90.3 1.4 3E-05 47.1 9.2 97 366-505 171-269 (350)
367 PRK13529 malate dehydrogenase; 90.1 1.6 3.5E-05 49.5 9.9 39 360-398 291-339 (563)
368 TIGR01373 soxB sarcosine oxida 90.1 0.48 1E-05 51.0 5.7 40 363-402 29-69 (407)
369 PRK09880 L-idonate 5-dehydroge 90.1 2.1 4.6E-05 44.9 10.4 34 363-396 169-202 (343)
370 PRK12743 oxidoreductase; Provi 90.1 1.5 3.3E-05 43.7 9.0 30 364-394 2-32 (256)
371 PRK09330 cell division protein 90.1 3.2 6.9E-05 45.2 11.8 111 361-505 10-133 (384)
372 TIGR01289 LPOR light-dependent 90.1 1.7 3.6E-05 45.4 9.5 34 363-396 2-36 (314)
373 PRK05599 hypothetical protein; 90.0 1.7 3.6E-05 43.4 9.2 29 366-396 2-31 (246)
374 PLN02650 dihydroflavonol-4-red 90.0 1.9 4.2E-05 45.3 10.0 33 363-396 4-37 (351)
375 PRK07533 enoyl-(acyl carrier p 89.9 1.6 3.5E-05 43.9 9.1 37 360-397 6-45 (258)
376 PRK09291 short chain dehydroge 89.9 2.5 5.4E-05 41.9 10.3 31 364-395 2-33 (257)
377 PRK06436 glycerate dehydrogena 89.9 0.43 9.4E-06 50.2 5.0 38 359-397 117-154 (303)
378 PRK07069 short chain dehydroge 89.8 2.1 4.6E-05 42.1 9.7 30 366-396 1-31 (251)
379 PRK08690 enoyl-(acyl carrier p 89.8 1.6 3.4E-05 44.1 8.8 35 360-395 2-39 (261)
380 PRK12779 putative bifunctional 89.7 1.3 2.9E-05 53.5 9.5 34 363-397 305-338 (944)
381 PRK08306 dipicolinate synthase 89.7 0.5 1.1E-05 49.5 5.2 36 361-397 149-184 (296)
382 PRK07775 short chain dehydroge 89.6 2.6 5.6E-05 42.7 10.3 34 362-396 8-42 (274)
383 PRK05884 short chain dehydroge 89.6 1.3 2.9E-05 43.6 8.0 31 366-397 2-33 (223)
384 PRK05557 fabG 3-ketoacyl-(acyl 89.6 1.8 4E-05 42.2 8.9 32 362-393 3-35 (248)
385 PRK06035 3-hydroxyacyl-CoA deh 89.6 0.48 1E-05 49.1 5.0 33 365-398 4-36 (291)
386 COG0240 GpsA Glycerol-3-phosph 89.5 1.9 4.1E-05 45.9 9.3 106 365-510 2-109 (329)
387 PRK06505 enoyl-(acyl carrier p 89.5 1.8 3.8E-05 44.2 9.0 34 362-396 5-41 (271)
388 PRK08642 fabG 3-ketoacyl-(acyl 89.4 1.8 4E-05 42.6 8.8 29 362-390 3-32 (253)
389 PRK04308 murD UDP-N-acetylmura 89.4 2.2 4.7E-05 46.9 10.2 35 362-397 3-37 (445)
390 COG0345 ProC Pyrroline-5-carbo 89.3 2.9 6.2E-05 43.4 10.3 90 365-506 2-95 (266)
391 PRK12936 3-ketoacyl-(acyl-carr 89.3 2.2 4.7E-05 41.8 9.2 33 362-395 4-37 (245)
392 PRK08415 enoyl-(acyl carrier p 89.2 2 4.4E-05 43.9 9.2 35 362-397 3-40 (274)
393 PRK12742 oxidoreductase; Provi 89.1 1.9 4E-05 42.2 8.6 33 361-394 3-36 (237)
394 PRK11259 solA N-methyltryptoph 89.1 0.52 1.1E-05 49.8 4.9 35 364-399 3-37 (376)
395 PRK11908 NAD-dependent epimera 89.1 4.8 0.0001 42.3 12.1 32 365-396 2-34 (347)
396 TIGR01500 sepiapter_red sepiap 89.0 2.2 4.7E-05 42.7 9.1 58 366-446 2-64 (256)
397 PRK03659 glutathione-regulated 89.0 2.1 4.5E-05 49.3 10.0 89 364-499 400-489 (601)
398 PLN02653 GDP-mannose 4,6-dehyd 88.9 1.7 3.6E-05 45.6 8.5 35 362-397 4-39 (340)
399 TIGR00561 pntA NAD(P) transhyd 88.9 1.7 3.8E-05 49.0 9.0 35 361-396 161-195 (511)
400 PF01266 DAO: FAD dependent ox 88.9 0.63 1.4E-05 47.9 5.3 34 366-400 1-34 (358)
401 PRK05650 short chain dehydroge 88.8 2.1 4.6E-05 43.1 8.9 30 366-396 2-32 (270)
402 PRK09730 putative NAD(P)-bindi 88.8 2.5 5.4E-05 41.5 9.2 26 365-390 2-28 (247)
403 PRK06947 glucose-1-dehydrogena 88.8 2.1 4.6E-05 42.2 8.8 28 365-393 3-31 (248)
404 PRK12409 D-amino acid dehydrog 88.8 0.57 1.2E-05 50.5 5.0 33 365-398 2-34 (410)
405 PRK06523 short chain dehydroge 88.7 1.3 2.8E-05 44.2 7.2 76 361-442 6-83 (260)
406 KOG0024 Sorbitol dehydrogenase 88.7 1.9 4E-05 45.9 8.5 34 363-396 169-202 (354)
407 TIGR01181 dTDP_gluc_dehyt dTDP 88.7 1.3 2.8E-05 45.0 7.4 31 366-396 1-33 (317)
408 PRK12809 putative oxidoreducta 88.7 2 4.4E-05 49.6 9.7 35 363-398 309-343 (639)
409 PRK06567 putative bifunctional 88.7 2.4 5.3E-05 51.2 10.4 41 362-403 381-421 (1028)
410 PLN02657 3,8-divinyl protochlo 88.6 2 4.3E-05 46.6 9.1 34 363-397 59-93 (390)
411 PLN02214 cinnamoyl-CoA reducta 88.6 2.3 4.9E-05 45.0 9.3 34 362-396 8-42 (342)
412 PRK06249 2-dehydropantoate 2-r 88.6 0.6 1.3E-05 48.9 4.9 34 364-398 5-38 (313)
413 PRK06077 fabG 3-ketoacyl-(acyl 88.6 2.3 5E-05 41.9 8.9 29 362-390 4-33 (252)
414 PRK08374 homoserine dehydrogen 88.5 2.3 5E-05 45.4 9.3 21 365-385 3-23 (336)
415 TIGR03451 mycoS_dep_FDH mycoth 88.5 3.8 8.2E-05 43.3 11.0 34 363-396 176-209 (358)
416 PRK07832 short chain dehydroge 88.5 2.1 4.6E-05 43.2 8.7 30 366-396 2-32 (272)
417 PLN00141 Tic62-NAD(P)-related 88.5 5.5 0.00012 39.8 11.6 35 358-393 11-46 (251)
418 TIGR01963 PHB_DH 3-hydroxybuty 88.5 2.1 4.6E-05 42.2 8.5 32 365-397 2-34 (255)
419 PLN02986 cinnamyl-alcohol dehy 88.4 2.5 5.5E-05 43.8 9.4 30 363-393 4-34 (322)
420 PRK12771 putative glutamate sy 88.4 2.1 4.5E-05 48.7 9.4 35 362-397 135-169 (564)
421 PRK05442 malate dehydrogenase; 88.4 0.86 1.9E-05 48.5 6.0 33 364-396 4-43 (326)
422 PRK10217 dTDP-glucose 4,6-dehy 88.4 1.9 4.2E-05 45.3 8.6 32 365-396 2-34 (355)
423 PRK11199 tyrA bifunctional cho 88.4 1.8 4E-05 46.8 8.6 33 364-397 98-131 (374)
424 TIGR01316 gltA glutamate synth 88.4 2.6 5.7E-05 46.5 10.0 35 362-397 131-165 (449)
425 PRK06223 malate dehydrogenase; 88.3 0.67 1.5E-05 48.3 5.0 32 365-396 3-34 (307)
426 TIGR01318 gltD_gamma_fam gluta 88.2 2.1 4.6E-05 47.5 9.2 34 363-397 140-173 (467)
427 PRK05225 ketol-acid reductoiso 88.2 1.3 2.9E-05 49.1 7.3 34 358-391 30-63 (487)
428 CHL00194 ycf39 Ycf39; Provisio 88.1 4.4 9.5E-05 42.2 11.0 31 366-397 2-33 (317)
429 PRK00141 murD UDP-N-acetylmura 88.1 0.61 1.3E-05 51.9 4.8 38 359-397 10-47 (473)
430 PRK06182 short chain dehydroge 88.1 2.1 4.6E-05 43.1 8.4 33 363-396 2-35 (273)
431 PRK12490 6-phosphogluconate de 88.1 1.9 4.2E-05 44.9 8.3 31 366-397 2-32 (299)
432 PRK08264 short chain dehydroge 88.0 0.75 1.6E-05 45.1 4.9 37 362-398 4-41 (238)
433 PRK06701 short chain dehydroge 87.9 2.2 4.8E-05 43.9 8.5 36 360-396 42-78 (290)
434 PRK05808 3-hydroxybutyryl-CoA 87.9 0.7 1.5E-05 47.6 4.8 32 365-397 4-35 (282)
435 PRK10669 putative cation:proto 87.8 2.8 6.1E-05 47.6 9.9 33 364-397 417-449 (558)
436 PRK10537 voltage-gated potassi 87.7 2.1 4.6E-05 46.7 8.6 89 362-500 238-328 (393)
437 KOG1208 Dehydrogenases with di 87.7 2.7 5.8E-05 44.6 9.1 90 360-481 31-121 (314)
438 PRK07530 3-hydroxybutyryl-CoA 87.7 0.81 1.7E-05 47.4 5.1 33 364-397 4-36 (292)
439 PF08659 KR: KR domain; Inter 87.6 4 8.8E-05 39.1 9.6 60 366-446 2-62 (181)
440 COG0665 DadA Glycine/D-amino a 87.6 0.85 1.9E-05 48.2 5.4 43 363-406 3-45 (387)
441 PLN02545 3-hydroxybutyryl-CoA 87.5 0.79 1.7E-05 47.5 5.0 32 365-397 5-36 (295)
442 PRK09135 pteridine reductase; 87.5 3.1 6.7E-05 40.7 9.0 33 363-396 5-38 (249)
443 PRK08159 enoyl-(acyl carrier p 87.5 2.7 5.8E-05 42.9 8.8 36 360-396 6-44 (272)
444 PRK14192 bifunctional 5,10-met 87.4 0.64 1.4E-05 48.5 4.2 35 361-396 156-191 (283)
445 PLN02350 phosphogluconate dehy 87.4 4.6 9.9E-05 45.5 11.2 120 365-505 7-131 (493)
446 cd05296 GH4_P_beta_glucosidase 87.4 2.4 5.1E-05 46.8 8.8 95 366-500 2-103 (419)
447 TIGR01771 L-LDH-NAD L-lactate 87.4 1.6 3.6E-05 45.7 7.3 28 369-396 1-29 (299)
448 PRK06603 enoyl-(acyl carrier p 87.4 3.3 7.2E-05 41.7 9.3 35 361-396 5-42 (260)
449 PLN00198 anthocyanidin reducta 87.4 3.4 7.4E-05 43.2 9.7 35 362-397 7-42 (338)
450 PRK09310 aroDE bifunctional 3- 87.3 0.8 1.7E-05 51.2 5.1 34 362-396 330-363 (477)
451 PLN02968 Probable N-acetyl-gam 87.2 1.3 2.9E-05 48.1 6.7 96 363-505 37-133 (381)
452 TIGR03466 HpnA hopanoid-associ 87.0 2.4 5.3E-05 43.4 8.3 31 366-397 2-33 (328)
453 PRK08818 prephenate dehydrogen 86.9 2.9 6.4E-05 45.3 9.0 35 362-396 2-37 (370)
454 PRK11730 fadB multifunctional 86.9 0.27 5.8E-06 57.7 1.1 33 365-398 314-346 (715)
455 TIGR01763 MalateDH_bact malate 86.9 0.9 1.9E-05 47.8 4.9 32 365-396 2-33 (305)
456 PRK12745 3-ketoacyl-(acyl-carr 86.8 3.3 7.1E-05 41.0 8.8 32 364-396 2-34 (256)
457 PTZ00318 NADH dehydrogenase-li 86.8 0.82 1.8E-05 49.9 4.8 39 360-399 6-44 (424)
458 PRK08220 2,3-dihydroxybenzoate 86.8 3.1 6.6E-05 41.1 8.6 36 362-398 6-42 (252)
459 cd05297 GH4_alpha_glucosidase_ 86.8 2.5 5.4E-05 46.6 8.5 33 365-397 1-38 (423)
460 COG1064 AdhP Zn-dependent alco 86.8 4.8 0.0001 43.2 10.3 93 364-505 167-259 (339)
461 PRK00436 argC N-acetyl-gamma-g 86.7 3.1 6.8E-05 44.4 9.0 37 472-509 66-104 (343)
462 PRK09134 short chain dehydroge 86.6 3.4 7.3E-05 41.2 8.8 31 363-394 8-39 (258)
463 PRK10084 dTDP-glucose 4,6 dehy 86.6 2.5 5.5E-05 44.3 8.2 31 366-396 2-33 (352)
464 PLN02740 Alcohol dehydrogenase 86.5 5.9 0.00013 42.4 11.1 34 363-396 198-231 (381)
465 TIGR00873 gnd 6-phosphoglucona 86.5 2.7 5.9E-05 46.9 8.7 119 366-505 1-122 (467)
466 TIGR01377 soxA_mon sarcosine o 86.5 0.9 1.9E-05 48.1 4.8 33 366-399 2-34 (380)
467 TIGR01472 gmd GDP-mannose 4,6- 86.4 3.5 7.6E-05 43.2 9.2 32 365-397 1-33 (343)
468 cd05298 GH4_GlvA_pagL_like Gly 86.4 3.8 8.2E-05 45.4 9.7 102 366-511 2-112 (437)
469 COG2423 Predicted ornithine cy 86.4 4.4 9.4E-05 43.3 9.8 77 364-486 130-207 (330)
470 cd08281 liver_ADH_like1 Zinc-d 86.3 5.3 0.00011 42.5 10.6 34 363-396 191-224 (371)
471 PLN02494 adenosylhomocysteinas 86.3 1 2.2E-05 50.2 5.2 37 361-398 251-287 (477)
472 COG4221 Short-chain alcohol de 86.2 3.2 6.9E-05 42.5 8.2 86 361-482 3-89 (246)
473 COG0059 IlvC Ketol-acid reduct 86.2 1.9 4.2E-05 45.4 6.8 32 358-389 12-43 (338)
474 PRK07424 bifunctional sterol d 86.2 3.7 8.1E-05 45.0 9.5 35 361-396 175-210 (406)
475 PRK09853 putative selenate red 86.1 2.2 4.8E-05 51.8 8.2 35 363-398 538-572 (1019)
476 PRK00257 erythronate-4-phospha 86.0 0.99 2.1E-05 49.1 4.9 36 360-396 112-147 (381)
477 PRK00811 spermidine synthase; 86.0 2.9 6.4E-05 43.4 8.2 34 363-398 76-110 (283)
478 TIGR02437 FadB fatty oxidation 85.9 0.34 7.4E-06 56.8 1.4 33 365-398 314-346 (714)
479 PF01494 FAD_binding_3: FAD bi 85.9 0.85 1.8E-05 46.9 4.2 34 365-399 2-35 (356)
480 PRK04690 murD UDP-N-acetylmura 85.9 3.1 6.6E-05 46.3 8.8 36 362-398 6-41 (468)
481 PRK13303 L-aspartate dehydroge 85.8 5 0.00011 41.3 9.7 22 365-386 2-23 (265)
482 COG0287 TyrA Prephenate dehydr 85.7 4 8.6E-05 42.6 8.9 27 364-390 3-29 (279)
483 PRK15076 alpha-galactosidase; 85.6 3.6 7.9E-05 45.5 9.1 94 365-501 2-105 (431)
484 PRK06484 short chain dehydroge 85.6 3.1 6.8E-05 46.2 8.7 36 361-397 2-38 (520)
485 PRK12770 putative glutamate sy 85.5 4.4 9.6E-05 43.0 9.5 112 363-484 17-128 (352)
486 PRK06463 fabG 3-ketoacyl-(acyl 85.5 3.3 7.1E-05 41.3 8.0 35 361-396 4-39 (255)
487 PRK12810 gltD glutamate syntha 85.4 3.5 7.7E-05 45.7 9.0 103 363-490 142-244 (471)
488 PRK00711 D-amino acid dehydrog 85.3 1.1 2.5E-05 48.1 4.9 32 366-398 2-33 (416)
489 COG0039 Mdh Malate/lactate deh 85.2 1.1 2.3E-05 47.6 4.5 33 365-397 1-34 (313)
490 PRK04207 glyceraldehyde-3-phos 85.1 4.8 0.0001 43.1 9.5 37 468-505 72-108 (341)
491 PRK05671 aspartate-semialdehyd 85.1 2.5 5.4E-05 45.2 7.3 33 472-505 64-96 (336)
492 PRK12778 putative bifunctional 84.9 4.7 0.0001 47.6 10.1 35 362-397 429-463 (752)
493 PRK08219 short chain dehydroge 84.8 4.3 9.2E-05 39.2 8.3 32 364-397 3-35 (227)
494 PF10087 DUF2325: Uncharacteri 84.8 2.1 4.5E-05 37.2 5.4 40 466-505 40-81 (97)
495 cd08239 THR_DH_like L-threonin 84.8 7.1 0.00015 40.6 10.5 34 363-396 163-196 (339)
496 PRK01747 mnmC bifunctional tRN 84.8 1.1 2.3E-05 52.0 4.7 34 364-398 260-293 (662)
497 PRK09564 coenzyme A disulfide 84.8 1.4 3E-05 48.1 5.4 35 365-399 1-36 (444)
498 PRK08040 putative semialdehyde 84.7 2.8 6E-05 44.9 7.4 91 363-505 3-96 (336)
499 PF13738 Pyr_redox_3: Pyridine 84.7 1 2.3E-05 43.1 3.9 36 360-396 163-198 (203)
500 PRK14806 bifunctional cyclohex 84.7 3.8 8.2E-05 48.1 9.2 32 365-396 4-36 (735)
No 1
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=9.5e-146 Score=1146.38 Aligned_cols=525 Identities=52% Similarity=0.890 Sum_probs=472.5
Q ss_pred CceeecCCccCCCchhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCce
Q 008323 13 SILQFAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRNK 92 (570)
Q Consensus 13 ~~l~f~p~~s~vd~~Fw~~L~~~KL~~~kL~~~~~~i~g~~~~~~~~~~~~~l~Ld~~SF~~~~~~~~~~~~~~~~~~~~ 92 (570)
.+|||+||.|++|++|||+|+++|||+|||||+|+.|+|+|.+.+..+ +++++++.||++... ...
T Consensus 6 ~~LqFaPf~S~lD~~FWhels~~KLd~~kLD~sP~~I~~~~~~~~~sg--~~lsl~~~~~~~~~~------------~~~ 71 (669)
T KOG2337|consen 6 IILQFAPFESFLDTGFWHELSELKLDKLKLDDSPKSITGHLTNRNASG--CLLSLSYGAFNSLAN------------TPG 71 (669)
T ss_pred ceeeecchhhhcchHHHHHHHhhhcchhcccCCcceeeceeccCCCcc--ceEEEecccccccCC------------CCC
Confidence 589999999999999999999999999999999999999999988766 899999999986532 123
Q ss_pred eeeeeEEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccceeeeeeeccCCcEEEEEeEeeccCCCCCee
Q 008323 93 CTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPAT 172 (570)
Q Consensus 93 ~~~~G~L~N~NTie~fK~~DK~~lL~~~~~~iw~~i~sg~~~~dp~~l~~F~l~~fADLKKykFyYWfAFPal~~~~~~~ 172 (570)
+++.|+|||+||+|+||++||+.||+++|++||++|++|.|++||++|++|+||||||||||+||||||||||..+.+..
T Consensus 72 ~~a~Gtl~N~NT~esFk~lDK~~ll~~ea~eiwesi~sG~aledP~lL~rFliisFADLKky~fyYW~~fPal~~~~~~~ 151 (669)
T KOG2337|consen 72 CPAIGTLYNTNTLESFKNLDKQLLLEQEAEEIWESIKSGKALEDPNLLSRFLIISFADLKKYKFYYWFCFPALVLPEPVS 151 (669)
T ss_pred CccceeeeccccHHHHhhhhHHHHHHHHHHHHHHhhccCccccChhhhhhhhhhhhhhhhhheeEEEeecchhhcCCcch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred eeccCcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEEeCCCcceecccccchhhcCCC-ceEEEEEEcCCCCCCC
Q 008323 173 VVDLKPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDG-QKLLFGFYDPCHLQNH 251 (570)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~D~s~~~~~ 251 (570)
.....|.+++++... .+.++++.|+......+.|||+++.+.+....+.+++++..+..+. +.++ +++|||..+++
T Consensus 152 ~I~~~p~~~~~s~~~--~l~~~~~~~~d~~~~~~~pffl~s~ss~~~~~~~~l~~ld~c~~~~~k~~~-~~~D~~~la~~ 228 (669)
T KOG2337|consen 152 LIKDLPPSQEFSPKG--SLGAACNILFDTARVYNFPFFLLSKSSDDESKILELSELDNCQGNHTKICL-VVYDPSQLASY 228 (669)
T ss_pred hhcccCchhccCccc--chHHHHHHHHhhhcccccceEEEEccccchhhhhhhhhhhhcccCCceEEE-Eeccccccccc
Confidence 433555566666655 6678888999887778999999998887777888888888877644 4466 99999999999
Q ss_pred CChHHHHHHHHHHhhcCceeEEEEEEEeCCCcc-cCCCceEEEEEeecCCCCCCCCCCccccceEec-CCcccceEeccc
Q 008323 252 PGWPLRNFLALILTRWKLKSVLFLCYRENRGFT-DLGLSLVGEALITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISLA 329 (570)
Q Consensus 252 pgw~lrN~l~~~~~~~~~~~~~v~~~R~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~gwe~~-~gk~~p~~~dl~ 329 (570)
||||+||||+++.++|.++.+.++|||++++.- +.+.++.+.+..+.. ...+.+|+++|||+| +||++||+|||+
T Consensus 229 pgwplrN~La~~~~~~~~~~i~~~~lR~~~~~~~~~s~~~~~~~~~~~~---~s~~~~~k~VGWErN~~Gkl~PR~V~Ls 305 (669)
T KOG2337|consen 229 PGWPLRNFLALAAHRWPLKHIHFFLLRDRQNMGIDLSLVIKFAVTLACD---LSQNAVPKAVGWERNKNGKLGPRMVDLS 305 (669)
T ss_pred CChhhHHHHHHHHhhcccceeEEEEEEeccccCccceeEEEEEEecccc---ccccCCccccceeeccCCCcCceEEehh
Confidence 999999999999999999999999999976533 555555555555543 134568999999999 899999999999
Q ss_pred cCCChhhhhHHhhhhhhhhhhhhcCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccC
Q 008323 330 KSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSL 409 (570)
Q Consensus 330 ~~~dp~~l~~~~~dlnlr~~r~rllp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L 409 (570)
.+|||.+|+|+++|||+++||||++|+++++++++.|||++|||||||+|||+|++||||||||||+++|++||++||+|
T Consensus 306 ~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsL 385 (669)
T KOG2337|consen 306 DSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSL 385 (669)
T ss_pred hccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhH
Q 008323 410 YTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRW 489 (570)
Q Consensus 410 ~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ 489 (570)
|+++||..+|++||++||++|++|||.++.+|+.++||||||||+.+..+++..+.+.++++|++||+||++||+||+||
T Consensus 386 y~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRW 465 (669)
T KOG2337|consen 386 YTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRW 465 (669)
T ss_pred hhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhh
Confidence 99999988899999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEeeeCCceEEEEEeCCCCCCcccccchhhccCccccccccCCCCCCCCCCccccccCCccCCCCCC
Q 008323 490 LPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDVI 569 (570)
Q Consensus 490 l~~~~~~~~~kp~I~aalG~~g~vv~~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCyfC~d~~ap~dS~ 569 (570)
+|+.+|..++|.+||+|+|||+|+|||||.+.....+..+ +.. .+.+++.+||||||||||||+|||
T Consensus 466 LPtll~a~~~KivINaALGFDsylVMRHG~~~~~~~~d~q------------~s~-~~~i~~~qLGCYFCnDV~AP~nSl 532 (669)
T KOG2337|consen 466 LPTLLAAAKNKIVINAALGFDSYLVMRHGTGRKEASDDGQ------------SSD-LKCINGDQLGCYFCNDVVAPGNSL 532 (669)
T ss_pred hHHHHHhhhcceEeeeecccceeEEEecCCCCcccccccc------------ccc-ccccCcccceeEeEcceecCCCcc
Confidence 9999999999999999999999999999998743222111 111 245889999999999999999998
Q ss_pred C
Q 008323 570 S 570 (570)
Q Consensus 570 ~ 570 (570)
+
T Consensus 533 ~ 533 (669)
T KOG2337|consen 533 T 533 (669)
T ss_pred c
Confidence 5
No 2
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=3.3e-134 Score=1106.50 Aligned_cols=521 Identities=44% Similarity=0.730 Sum_probs=462.0
Q ss_pred ecCCccCCCchhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCceeeee
Q 008323 17 FAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRNKCTVP 96 (570)
Q Consensus 17 f~p~~s~vd~~Fw~~L~~~KL~~~kL~~~~~~i~g~~~~~~~~~~~~~l~Ld~~SF~~~~~~~~~~~~~~~~~~~~~~~~ 96 (570)
|+||+|+||++|||+|+++|||++||||+|++|+|+|++++..+.+++++||++||+++.. ...+.++++++
T Consensus 1 f~pf~S~vd~~Fw~~Ls~~KL~~~kLdds~~~i~g~y~~~~~~~~~~~l~l~~~sf~~~~~--------~~~~~~~~~~~ 72 (664)
T TIGR01381 1 FVPFVSCVDTGFWNEVSKLKLNKWKLDDTPKCISGQLSLHQTEGFKCHLSLSYDSLSSLES--------TTGTHAQLSVS 72 (664)
T ss_pred CCCcccccCcHHHHHHHhhhcccccCCCCceeEEEEEeccCCCCCCceEEEehhhCCcccc--------ccCCCCceEEE
Confidence 8999999999999999999999999999999999999999888888999999999975421 01245678999
Q ss_pred eEEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccceeeeeeeccCCcEEEEEeEeeccCCCCCeeeecc
Q 008323 97 GTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDL 176 (570)
Q Consensus 97 G~L~N~NTie~fK~~DK~~lL~~~~~~iw~~i~sg~~~~dp~~l~~F~l~~fADLKKykFyYWfAFPal~~~~~~~~~~~ 176 (570)
|+|+|+||||+||++||++||+++|++||++|.+|+++++|++|++|+||||||||||||||||||||++++++|++.+.
T Consensus 73 G~l~N~NTiE~Fk~~DK~~ll~~~~~~i~~~i~~g~~~~~pslL~~F~ilsfADLKky~f~YWfafPal~~~~~~~~~~~ 152 (664)
T TIGR01381 73 GILLNYNTVESFKKVDKSDLLRSEAEKIWESIQTRKWLQDPSLLSQFFIISFADLKKFKFYYWFCFPALVYPSKVNKLSG 152 (664)
T ss_pred EEEEecccHHHHHhhhHHHHHHHHHHHHHHHHhcCCcccCHHHHHhhHhhhhhhcccceEEEEEEEcccCCCCcceEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEEeCCCcceecccccchhhcCCCceEEEEEEcCCCCCCCCChHH
Q 008323 177 KPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPCHLQNHPGWPL 256 (570)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~D~s~~~~~pgw~l 256 (570)
....+.++.++.+.+.+.++.|++.....+.+||++.+..+..+.+.+|++|+.. ....++ ||+|||+++++|||||
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ffl~~~~~~~~~~~~~l~~~~~~--~~~~~~-~f~Dps~~~~~Pgw~l 229 (664)
T TIGR01381 153 LTESIKQEITPLESLGADHKILFDFYRKNNFPFFLYSKQSSKMLELSELENNTNP--DDELCV-GFADPSPVAYSAGWML 229 (664)
T ss_pred cccccccCchhhHHHHHHHHHHHhhcccccccEEEEEecCCCceeEeehhhcccC--CCceEE-EEEcCCCCCCCCCHHH
Confidence 3334447777788888999999997766678999997665566678788877632 223377 9999999999999999
Q ss_pred HHHHHHHHhhcC-ceeEEEEEEEeCCCcccCCCceEEEEE------eecCCCCCCCCCCccccceEec-CCcccceEecc
Q 008323 257 RNFLALILTRWK-LKSVLFLCYRENRGFTDLGLSLVGEAL------ITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (570)
Q Consensus 257 rN~l~~~~~~~~-~~~~~v~~~R~~~~~~~~~~s~~~~~~------~~~~~~~~~~~~~~~~~gwe~~-~gk~~p~~~dl 328 (570)
||||++++++|+ +++++|+|||+... . +|++++++ ++.. ......|+++|||+| .||++||++||
T Consensus 230 RN~L~~l~~~~~~~~~~~vl~~R~~~~---~-~s~~~~~~~~~~~~~~~~---~~~~~~pk~~GWErn~~GKl~pr~~dL 302 (664)
T TIGR01381 230 RNVLAAVAHLHPTWKHVHIFSLRSADS---I-GIKYLWTTLLPSAELSSD---GAQNAVPKAVGWERNANGKLQPISVDL 302 (664)
T ss_pred HHHHHHHHHhcCCCceEEEEEEecCCC---C-CcEEEEEeeccccccCcc---cccccCcccccccccCCCCcCceEech
Confidence 999999999997 88999999998632 2 69999998 4421 112225999999999 99999999999
Q ss_pred ccCCChhhhhHHhhhhhhhhhhhhcCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCccc
Q 008323 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (570)
Q Consensus 329 ~~~~dp~~l~~~~~dlnlr~~r~rllp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~ 408 (570)
+++|||.+|+++++|||+|+||||++|++++++|+++||||+|||||||+||++|++||||+|||||+|+|++|||+||+
T Consensus 303 ~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~ 382 (664)
T TIGR01381 303 SKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQS 382 (664)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhh
Q 008323 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (570)
Q Consensus 409 L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R 488 (570)
||+++|+..+|++||++|+++|++|||+|+++++..+||||||+++....++...+.+++.+++++||+||+|+|++++|
T Consensus 383 Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR 462 (664)
T TIGR01381 383 LSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR 462 (664)
T ss_pred ccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH
Confidence 99999998889999999999999999999999999999999999987666777788899999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEeeeCCceEEEEEeCCCCCCcccccchhhccCccccccccCCCCCCCCCCccccccCCccCCCCC
Q 008323 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDV 568 (570)
Q Consensus 489 ~l~~~~~~~~~kp~I~aalG~~g~vv~~hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCyfC~d~~ap~dS 568 (570)
|+++.+|..++||+|++++||+||++||||..+....+.... .+..+..++|||||||||+|+||
T Consensus 463 ~L~n~~c~~~~kplI~aAlGfdg~lvmrhG~~~~~~~~~~~~---------------~~~~~~~~~gCYfC~Dv~aP~~s 527 (664)
T TIGR01381 463 WLPTVLCSRHKKIAISAALGFDSYVVMRHGIGRSESVSDVSS---------------SDSVPYSRLGCYFCNDVTAPGDS 527 (664)
T ss_pred HHHHHHHHHhCCCEEEEEeccceEEEEEeccccccccccccc---------------ccccCCCCCCccccCCCCCCCcc
Confidence 999999999999999999999999999999975432111000 00122348999999999999999
Q ss_pred CC
Q 008323 569 IS 570 (570)
Q Consensus 569 ~~ 570 (570)
++
T Consensus 528 ~~ 529 (664)
T TIGR01381 528 TT 529 (664)
T ss_pred cc
Confidence 74
No 3
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=1.6e-51 Score=420.89 Aligned_cols=190 Identities=62% Similarity=1.079 Sum_probs=169.5
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
||+|+|+|||||+||++|++|||++|+|||+|+|+++||+||+||+++|+ ..|++||++|+++|+++||+++++++.++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~-~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~ 79 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDC-KGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchh-hcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence 69999999999999999999999999999999999999999999999992 22999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEeeeCCceEEEEEeCCCCCCcc
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSIT 525 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~aalG~~g~vv~~hG~~~~~~~ 525 (570)
|||||||+..++.++...+.+++++++++||+||+|+|++++||+++.+|..++||+|++++||+||++||||..+....
T Consensus 80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred ccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEeccceEEEEEeCCCccccc
Confidence 99999999877677778889999999999999999999999999999999999999999999999999999998654321
Q ss_pred cccchhhccCccccccccCCCCCCCCCCccccccCCccCCCCCCC
Q 008323 526 HDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDVIS 570 (570)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCyfC~d~~ap~dS~~ 570 (570)
+.... ..+..+..+||||||||||||+|||+
T Consensus 160 ~~~~~--------------~~~~~~~~~lgCYfCnDv~ap~~s~~ 190 (307)
T cd01486 160 GSGDS--------------SSDSIPGSRLGCYFCNDVVAPGDSLK 190 (307)
T ss_pred ccccc--------------cccccCCCCcceeeeCCEecCCCCCC
Confidence 11000 01123445999999999999999985
No 4
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.5e-32 Score=277.13 Aligned_cols=151 Identities=29% Similarity=0.386 Sum_probs=139.9
Q ss_pred hhhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||.||+.++.+ +|++|+++||+|+|+||+||++|++|+++||++|+|+|+|.|+.+|++||+||+.+|+ |++|
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~K 87 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI---GQPK 87 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC---CChH
Confidence 589999876655 4899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+
T Consensus 88 a~~a~~~l~~lnp~v~i~~~~~~i-----------------~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~ 150 (245)
T PRK05690 88 VESARAALARINPHIAIETINARL-----------------DDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPL 150 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999987554 446677889999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEE
Q 008323 503 ITA-ALGFDSFLVMR 516 (570)
Q Consensus 503 I~a-alG~~g~vv~~ 516 (570)
|.+ +.|+.|++...
T Consensus 151 v~~~~~g~~G~v~~~ 165 (245)
T PRK05690 151 VSGAAIRMEGQVTVF 165 (245)
T ss_pred EEeeeccCCceEEEE
Confidence 997 68999998654
No 5
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=1.7e-32 Score=269.15 Aligned_cols=149 Identities=28% Similarity=0.403 Sum_probs=138.2
Q ss_pred hhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHH
Q 008323 347 KLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (570)
Q Consensus 347 r~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Ka 423 (570)
||+||+.++.+ +|++|+++||+|+|+||+|+++|++|+++||++|+++|+|.|+++|++||+||+.+|+ |++||
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka 77 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV 77 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence 69999876444 5999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEE
Q 008323 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (570)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I 503 (570)
++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERV-----------------TAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcC-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987554 3456778899999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEE
Q 008323 504 TA-ALGFDSFLVM 515 (570)
Q Consensus 504 ~a-alG~~g~vv~ 515 (570)
.+ ..|+.|++..
T Consensus 141 ~~~~~g~~G~~~~ 153 (202)
T TIGR02356 141 SAAVVGFGGQLMV 153 (202)
T ss_pred EEEeccCeEEEEE
Confidence 98 6899999874
No 6
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.98 E-value=9.4e-32 Score=270.61 Aligned_cols=150 Identities=29% Similarity=0.391 Sum_probs=139.7
Q ss_pred hhhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||.||++++.+ +|++|+++||+|+|+||+||++|++|+++||++|+|+|+|.|+.+|++||++|+.+|+ |++|
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~K 79 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQPK 79 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCcH
Confidence 589999988765 4899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~ 142 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKL-----------------DDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPL 142 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987544 446778899999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEE
Q 008323 503 ITA-ALGFDSFLVM 515 (570)
Q Consensus 503 I~a-alG~~g~vv~ 515 (570)
|.+ +.|+.|++.+
T Consensus 143 v~~~~~g~~G~v~~ 156 (240)
T TIGR02355 143 VSGAAIRMEGQVSV 156 (240)
T ss_pred EEEEecccEeEEEE
Confidence 997 6899999753
No 7
>PRK07411 hypothetical protein; Validated
Probab=99.98 E-value=9.2e-32 Score=288.19 Aligned_cols=151 Identities=23% Similarity=0.253 Sum_probs=141.3
Q ss_pred hhhhhhhcCCcch---HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l~---~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||+||+.+|++| |++|+++||+|||||||||++|++|+++||++|+|+|+|+|+.+||+||+||+.+|+ |++|
T Consensus 17 ~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv---G~~K 93 (390)
T PRK07411 17 ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV---GKPK 93 (390)
T ss_pred HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC---CCcH
Confidence 5899999887654 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||.++++.+...+ +.++..++++++|+||+|+|+.++|++++++|..+++|+
T Consensus 94 a~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 156 (390)
T PRK07411 94 IESAKNRILEINPYCQVDLYETRL-----------------SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPN 156 (390)
T ss_pred HHHHHHHHHHHCCCCeEEEEeccc-----------------CHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998654 456778889999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEE
Q 008323 503 ITA-ALGFDSFLVMR 516 (570)
Q Consensus 503 I~a-alG~~g~vv~~ 516 (570)
|.+ ..|+.|++.+.
T Consensus 157 v~~~~~g~~g~~~v~ 171 (390)
T PRK07411 157 VYGSIFRFEGQATVF 171 (390)
T ss_pred EEEEEccCEEEEEEE
Confidence 998 69999998754
No 8
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=1.2e-31 Score=274.31 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=142.5
Q ss_pred hhhhhhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCC
Q 008323 342 ADLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (570)
Q Consensus 342 ~dlnlr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk 420 (570)
.+...+|.||. +++..+|++|++++|+|+||||+||++|++|+++||++|+|+|+|.|+.||++||++|+.+|+ |+
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~ 80 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GR 80 (287)
T ss_pred ccHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CC
Confidence 35567899997 457778999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCCh--HhhHHHHHHHHhc
Q 008323 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANT 498 (570)
Q Consensus 421 ~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~l~~~~~~~~ 498 (570)
+||++++++|+++||.++++.+...+ +.+++.++++++|+|++++|+. ++|+++++.|+.+
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l-----------------~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~ 143 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGI-----------------GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR 143 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccc-----------------CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence 99999999999999999999997654 4567888999999999999986 8999999999999
Q ss_pred CCeEEEe-eeCCceEEEEE
Q 008323 499 NKITITA-ALGFDSFLVMR 516 (570)
Q Consensus 499 ~kp~I~a-alG~~g~vv~~ 516 (570)
++|+|.+ ..|+.|++...
T Consensus 144 ~iP~V~~~~~g~~gqv~v~ 162 (287)
T PRK08223 144 GIPALTAAPLGMGTALLVF 162 (287)
T ss_pred CCCEEEEeccCCeEEEEEE
Confidence 9999998 69999998544
No 9
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=1.6e-31 Score=266.84 Aligned_cols=150 Identities=32% Similarity=0.402 Sum_probs=138.0
Q ss_pred hhhhhhcC---CcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHH
Q 008323 347 KLMRWRQL---PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (570)
Q Consensus 347 r~~r~rll---p~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Ka 423 (570)
||+||+.+ +..+|++|+++||+|+||||+||++|++|+++||++|+|+|+|.|+++|++||+||+.+|+ |++||
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka 77 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA 77 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence 68999766 4445899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEE
Q 008323 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (570)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I 503 (570)
++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i-----------------~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i 140 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERL-----------------DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLV 140 (228)
T ss_pred HHHHHHHHHhCCCCEEEEeccee-----------------CHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987544 4567788899999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEEE
Q 008323 504 TA-ALGFDSFLVMR 516 (570)
Q Consensus 504 ~a-alG~~g~vv~~ 516 (570)
++ ..|+.|++...
T Consensus 141 ~~g~~g~~g~v~~~ 154 (228)
T cd00757 141 SGAVLGFEGQVTVF 154 (228)
T ss_pred EEEeccCEEEEEEE
Confidence 98 68999998643
No 10
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=3.6e-31 Score=280.43 Aligned_cols=151 Identities=27% Similarity=0.300 Sum_probs=141.1
Q ss_pred hhhhhhhcCCcch---HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l~---~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||.||..+|++| |++|+++||+|+||||+||++|++|+++||++|+|||+|.|+.+|++||+||+.+|+ |++|
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~K 83 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV---GQPK 83 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC---CChH
Confidence 5899998776654 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||.++++.+...+ +.++..++++++|+||+|+|+.++|++++.+|+++++|+
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~ 146 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRL-----------------TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPH 146 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987654 456778889999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEE
Q 008323 503 ITA-ALGFDSFLVMR 516 (570)
Q Consensus 503 I~a-alG~~g~vv~~ 516 (570)
|.+ ..|+.|++.+.
T Consensus 147 v~~~~~g~~g~v~~~ 161 (355)
T PRK05597 147 VWASILGFDAQLSVF 161 (355)
T ss_pred EEEEEecCeEEEEEE
Confidence 998 68999998764
No 11
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.97 E-value=1.1e-30 Score=280.25 Aligned_cols=151 Identities=25% Similarity=0.254 Sum_probs=140.1
Q ss_pred hhhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||.||+.+|++ +|++|+++||+|+||||+||++|++|+++||++|+|||+|.|+.+|++||++|+.+|+ |++|
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~K 97 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV---GRSK 97 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC---CChH
Confidence 589999876655 4899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||.++++.+..++ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 98 a~~a~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 98 AQSARDSIVEINPLVNVRLHEFRL-----------------DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccC-----------------ChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999887554 446678889999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEE
Q 008323 503 ITA-ALGFDSFLVMR 516 (570)
Q Consensus 503 I~a-alG~~g~vv~~ 516 (570)
|.+ ..|+.|++.+.
T Consensus 161 v~~~~~g~~G~v~~~ 175 (392)
T PRK07878 161 VWGSIYRFEGQASVF 175 (392)
T ss_pred EEEEeccCEEEEEEE
Confidence 997 79999998754
No 12
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=99.97 E-value=1.2e-30 Score=255.25 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=138.6
Q ss_pred hhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHH
Q 008323 347 KLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMA 425 (570)
Q Consensus 347 r~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaea 425 (570)
+|+||. +++..+|++|+++||+|+|+||+||++|++|+++||++|+++|+|.|+.+|++||++|+.+|+ |++||++
T Consensus 3 ~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~a 79 (197)
T cd01492 3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAEA 79 (197)
T ss_pred hhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHHH
Confidence 689996 567778999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 426 AVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 426 aa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
++++|+++||.++++.+...+ + +...++++++|+||+|+|+.+.|..++++|+++++|+|.+
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~-----------------~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 80 SLERLRALNPRVKVSVDTDDI-----------------S-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHCCCCEEEEEecCc-----------------c-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999887543 1 3356788999999999999999999999999999999998
Q ss_pred -eeCCceEEEEEe
Q 008323 506 -ALGFDSFLVMRH 517 (570)
Q Consensus 506 -alG~~g~vv~~h 517 (570)
..|+.||++..+
T Consensus 142 ~~~G~~G~v~~d~ 154 (197)
T cd01492 142 GVHGLFGFVFADL 154 (197)
T ss_pred EecCCEEEEEEec
Confidence 689999998765
No 13
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=273.37 Aligned_cols=153 Identities=28% Similarity=0.327 Sum_probs=139.3
Q ss_pred hhhhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCc
Q 008323 345 NLKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (570)
Q Consensus 345 nlr~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~ 421 (570)
..||.||++++.+ +|++|++++|+|||+||+||++|++|+++||++|+|||+|.|+.||++||+||+.+|+ ..|++
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~ 80 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKP 80 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCcc
Confidence 4589999876544 5999999999999999999999999999999999999999999999999999999998 23589
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCe
Q 008323 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (570)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp 501 (570)
||++++++|+++||.++++++..++ +.++++++++++|+||+|+|+.++|++++++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~-----------------~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip 143 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDV-----------------TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIP 143 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987544 34677888999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEE
Q 008323 502 TITA-ALGFDSFLVM 515 (570)
Q Consensus 502 ~I~a-alG~~g~vv~ 515 (570)
+|.+ +.|+.|++..
T Consensus 144 ~i~~~~~g~~G~~~~ 158 (338)
T PRK12475 144 WIYGGCVGSYGVTYT 158 (338)
T ss_pred EEEEEecccEEEEEE
Confidence 9997 6899998753
No 14
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=2e-31 Score=271.96 Aligned_cols=156 Identities=29% Similarity=0.339 Sum_probs=147.6
Q ss_pred hhhhhhhhhhcCCcch---HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCC
Q 008323 343 DLNLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG 419 (570)
Q Consensus 343 dlnlr~~r~rllp~l~---~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~G 419 (570)
|.-.||.||.++|+++ |.+|++++|||||||||||.+|..|+.+|||+|-|||+|.||.+|+.||.++++.++ |
T Consensus 42 dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~v---g 118 (427)
T KOG2017|consen 42 DEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARV---G 118 (427)
T ss_pred HHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhh---h
Confidence 3457999999999985 899999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcC
Q 008323 420 DFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN 499 (570)
Q Consensus 420 k~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~ 499 (570)
+.||++|+..++++||.++++.|... .+..++.++|+++|||.+||||..+|+++++.|...|
T Consensus 119 ~~Ka~sA~~~lr~lNs~v~v~~y~~~-----------------L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg 181 (427)
T KOG2017|consen 119 MHKAESAAAFLRRLNSHVEVQTYNEF-----------------LSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG 181 (427)
T ss_pred hHHHHHHHHHHHhcCCCceeeechhh-----------------ccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC
Confidence 99999999999999999999999743 4668899999999999999999999999999999999
Q ss_pred CeEEEe-eeCCceEEEEEeC
Q 008323 500 KITITA-ALGFDSFLVMRHG 518 (570)
Q Consensus 500 kp~I~a-alG~~g~vv~~hG 518 (570)
||+|.+ +++++|++.++|-
T Consensus 182 kpLVSgSaLr~EGQLtvYny 201 (427)
T KOG2017|consen 182 KPLVSGSALRWEGQLTVYNY 201 (427)
T ss_pred CcccccccccccceeEEeec
Confidence 999998 8999999998875
No 15
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.97 E-value=2.1e-30 Score=275.69 Aligned_cols=151 Identities=26% Similarity=0.369 Sum_probs=141.3
Q ss_pred hhhhhhhcCCcch---HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l~---~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||.||..+|.+| |++|++++|+|+|+||+||++|++|+++||++|+|+|+|.|+.+|++||+||+.+|+ |++|
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di---G~~K 96 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV---GRPK 96 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC---CCHH
Confidence 6899998877664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+.+++|+
T Consensus 97 a~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~ 159 (370)
T PRK05600 97 VEVAAERLKEIQPDIRVNALRERL-----------------TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPL 159 (370)
T ss_pred HHHHHHHHHHHCCCCeeEEeeeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987654 456788899999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEE
Q 008323 503 ITA-ALGFDSFLVMR 516 (570)
Q Consensus 503 I~a-alG~~g~vv~~ 516 (570)
|.+ ..|+.|++.+.
T Consensus 160 v~~~~~g~~G~v~v~ 174 (370)
T PRK05600 160 VWGTVLRFHGELAVF 174 (370)
T ss_pred EEEEEecCEEEEEEE
Confidence 998 68999998654
No 16
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=258.81 Aligned_cols=150 Identities=25% Similarity=0.242 Sum_probs=137.7
Q ss_pred hhhhhhhc-CCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCC-cHH
Q 008323 346 LKLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKA 423 (570)
Q Consensus 346 lr~~r~rl-lp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk-~Ka 423 (570)
.||.||+. ++..+|++|++++|+|+||||+||++|++|+++||++|+|+|+|.|+.+|++||++|+.+|+ |+ +|+
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~~k~ 84 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL---GKNPKP 84 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---CchHHH
Confidence 58999974 45556999999999999999999999999999999999999999999999999999999999 99 599
Q ss_pred HHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEE
Q 008323 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (570)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I 503 (570)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRL-----------------SEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987543 3456778899999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEE
Q 008323 504 TA-ALGFDSFLVM 515 (570)
Q Consensus 504 ~a-alG~~g~vv~ 515 (570)
++ ..|+.|++..
T Consensus 148 ~g~~~g~~G~v~~ 160 (231)
T PRK08328 148 HGAVEGTYGQVTT 160 (231)
T ss_pred EEeeccCEEEEEE
Confidence 98 6899999864
No 17
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.97 E-value=4.6e-30 Score=251.32 Aligned_cols=153 Identities=19% Similarity=0.241 Sum_probs=138.7
Q ss_pred hhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCc--ccccCCCCcHH
Q 008323 347 KLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL--DDCLNGGDFKA 423 (570)
Q Consensus 347 r~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~--~Dv~~~Gk~Ka 423 (570)
+|+||. +++..+|++|+++||+|+|+||+||++|++|+++||++|+++|+|.|+.+|++||++|+. +|+ |++||
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka 77 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA 77 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence 588996 456677999999999999999999999999999999999999999999999999999998 888 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEE
Q 008323 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (570)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I 503 (570)
++++++|+++||+++++.+...+ ....++..++++++|+||+|+|+.+.|..++++|+++++|+|
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~---------------~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i 142 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDS---------------LSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFI 142 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEeccc---------------ccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999886433 011356678899999999999999999999999999999999
Q ss_pred Ee-eeCCceEEEEEe
Q 008323 504 TA-ALGFDSFLVMRH 517 (570)
Q Consensus 504 ~a-alG~~g~vv~~h 517 (570)
.+ ..|+.||++...
T Consensus 143 ~~~~~G~~G~v~~~~ 157 (198)
T cd01485 143 SCATYGLIGYAFFDF 157 (198)
T ss_pred EEEeecCEEEEEEch
Confidence 98 689999998765
No 18
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.96 E-value=2.2e-29 Score=265.11 Aligned_cols=154 Identities=31% Similarity=0.364 Sum_probs=139.4
Q ss_pred hhhhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCc
Q 008323 345 NLKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (570)
Q Consensus 345 nlr~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~ 421 (570)
+.||.||++++.+ +|++|+++||+|+||||+||++|++|+++||++|+|||.|.|+.+|++||++|+.+|+ ..|++
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di-g~g~~ 80 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV-KNNLP 80 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh-cCCCc
Confidence 5689999877555 4899999999999999999999999999999999999999999999999999999999 22459
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCe
Q 008323 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (570)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp 501 (570)
|+++++++|+++||.++++++..++ +.+++.++++++|+||+|+|+.++|.+++++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~v~~~~~~~-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP 143 (339)
T PRK07688 81 KAVAAKKRLEEINSDVRVEAIVQDV-----------------TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIP 143 (339)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999987544 45677888999999999999999999999999999999
Q ss_pred EEEe-eeCCceEEEEE
Q 008323 502 TITA-ALGFDSFLVMR 516 (570)
Q Consensus 502 ~I~a-alG~~g~vv~~ 516 (570)
+|.+ +.|+.|++...
T Consensus 144 ~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 144 WIYGACVGSYGLSYTI 159 (339)
T ss_pred EEEEeeeeeeeEEEEE
Confidence 9997 68999986543
No 19
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=1.2e-28 Score=226.40 Aligned_cols=133 Identities=36% Similarity=0.478 Sum_probs=122.2
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
+++||+|+|+|++||++|++|+++|+++|+|+|+|.|+++|++||++|+.+|+ |++|+++++++|+++||+++++.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence 47899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEEE
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv~ 515 (570)
...+ +.++..++++++|+||+|+|+.+.|.+++++|+++++|+|.+ ..|+.|+++|
T Consensus 78 ~~~~-----------------~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 78 PEKI-----------------DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp ESHC-----------------SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eccc-----------------ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 8654 457788888999999999999999999999999999999998 5899999976
No 20
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.96 E-value=3.2e-29 Score=257.44 Aligned_cols=148 Identities=24% Similarity=0.276 Sum_probs=136.8
Q ss_pred hhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHH
Q 008323 348 LMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAA 426 (570)
Q Consensus 348 ~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaa 426 (570)
|+||+ +++..+|++|++++|||+|+||+||++|++|+++||++|+|+|+|.|+.+|++||++++.+|+ |++||+++
T Consensus 2 YsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea~ 78 (286)
T cd01491 2 YSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEAS 78 (286)
T ss_pred cccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHHH
Confidence 78996 456667999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-
Q 008323 427 VKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA- 505 (570)
Q Consensus 427 a~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a- 505 (570)
+++|+++||.|+++.+...+ .++++.++|+||+|.|+.+.|..++++|+++++|+|.+
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~---------------------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPL---------------------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHCCCCEEEEEeccC---------------------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 99999999999999886321 13577899999999999999999999999999999998
Q ss_pred eeCCceEEEEEeCC
Q 008323 506 ALGFDSFLVMRHGP 519 (570)
Q Consensus 506 alG~~g~vv~~hG~ 519 (570)
+.|+.|+++.++|.
T Consensus 138 ~~G~~G~vf~dfg~ 151 (286)
T cd01491 138 TRGLFGSIFCDFGD 151 (286)
T ss_pred ccccEEEEEecCCC
Confidence 79999999998884
No 21
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.96 E-value=5.3e-29 Score=249.53 Aligned_cols=132 Identities=21% Similarity=0.236 Sum_probs=120.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
||+|+|+||+||+++++|+++||++|+++|.|+|+.+||+||+||+.+|+ |++||++++++|+++||+++++.+..+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999998765
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEEE
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv~ 515 (570)
| . ...+...++++++|+||+|+|+.++|.+++.+|+.+++|+|++ ..|+.|++.+
T Consensus 78 i-----------~----~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~v 133 (234)
T cd01484 78 V-----------G----PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQV 133 (234)
T ss_pred C-----------C----hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEE
Confidence 5 0 0112235788999999999999999999999999999999998 6899999854
No 22
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.96 E-value=1.4e-28 Score=262.60 Aligned_cols=151 Identities=28% Similarity=0.343 Sum_probs=138.5
Q ss_pred hhhhhhhcCCcc---hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l---~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||.||+.++.+ +|++|+++||+|+|+||+|+++|++|+++||++|+|+|+|.|+.+|++||++|+.+|+ |++|
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di---G~~K 190 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV---GQPK 190 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC---CCcH
Confidence 468999876655 4899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 191 a~~~~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~ 253 (376)
T PRK08762 191 VDSAAQRLAALNPDVQVEAVQERV-----------------TSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253 (376)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------ChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999998886543 345677888999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEE
Q 008323 503 ITA-ALGFDSFLVMR 516 (570)
Q Consensus 503 I~a-alG~~g~vv~~ 516 (570)
|.+ ..|+.|++...
T Consensus 254 i~~~~~g~~g~v~~~ 268 (376)
T PRK08762 254 VYGAVFRFEGQVSVF 268 (376)
T ss_pred EEEEeccCEEEEEEE
Confidence 998 58999998754
No 23
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.96 E-value=2.1e-28 Score=247.82 Aligned_cols=152 Identities=31% Similarity=0.423 Sum_probs=142.3
Q ss_pred hhhhhhhcCCcch---HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 346 lr~~r~rllp~l~---~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
.||+||..++.++ |++|+..||+|+|+||+||+++++|+++||++++|+|+|+|+.+|+.||++|+.+|+ |++|
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di---g~~K 85 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV---GKPK 85 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc---CCcH
Confidence 5899999887765 999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
++++++.|+++||.++++.+...+ +.+++.++++++|+|++|+|+.++|+++|..|+.+++|+
T Consensus 86 a~~a~~~l~~ln~~v~v~~~~~~l-----------------~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pl 148 (254)
T COG0476 86 AEVAAKALRKLNPLVEVVAYLERL-----------------DEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPL 148 (254)
T ss_pred HHHHHHHHHHhCCCCeEEEeeccc-----------------ChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCe
Confidence 999999999999999999997544 557778999999999999999999999999999999999
Q ss_pred EEe-eeCCceEEEEEe
Q 008323 503 ITA-ALGFDSFLVMRH 517 (570)
Q Consensus 503 I~a-alG~~g~vv~~h 517 (570)
+++ +.|++|++.+..
T Consensus 149 i~~~~~~~~g~~~~~~ 164 (254)
T COG0476 149 VHGGAIGFEGQVTVII 164 (254)
T ss_pred EeeeeccceEEEEEEe
Confidence 997 799999997543
No 24
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=2.1e-28 Score=254.25 Aligned_cols=133 Identities=24% Similarity=0.345 Sum_probs=122.3
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
||+|+|+||+||++|++|+++||++|+|+|.|.|+.+||+||+||+.+|+ |++||++++++|+++||+++++.+..+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999765
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEEEEe
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv~~h 517 (570)
+ .+.....++++++|+||+|.|+.++|.+++.+|+.+++|+|++ ..|+.|++.+..
T Consensus 78 i----------------~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~ 134 (312)
T cd01489 78 I----------------KDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIK 134 (312)
T ss_pred C----------------CCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEc
Confidence 5 1112345788999999999999999999999999999999997 689999997553
No 25
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=2.7e-28 Score=285.46 Aligned_cols=194 Identities=19% Similarity=0.205 Sum_probs=160.0
Q ss_pred CccccceEe--c-CCcccce----EeccccCCChh-hhh-HHhhhhhhhhhhhh-cCCcchHhhhccCeEEEEcCchHHH
Q 008323 308 VPNTVGWEL--N-KGRKVPR----CISLAKSMDPT-RLA-ISAADLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGC 377 (570)
Q Consensus 308 ~~~~~gwe~--~-~gk~~p~----~~dl~~~~dp~-~l~-~~~~dlnlr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~ 377 (570)
+.+++|+|. . +||+.|. .+|-.+.+... .+. ++....|.||+||+ +++..+|++|+++||+||||||+||
T Consensus 353 ~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~ 432 (1008)
T TIGR01408 353 VGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGC 432 (1008)
T ss_pred hchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHH
Confidence 345677885 3 8999997 35544443221 111 12234689999996 5566679999999999999999999
Q ss_pred HHHHHHHHccC-----CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCC
Q 008323 378 QVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHP 452 (570)
Q Consensus 378 ~VA~~La~~GV-----~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~ 452 (570)
+++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||.++++++..++
T Consensus 433 e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v------ 503 (1008)
T TIGR01408 433 EMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI---GKPKSYTAADATLKINPQIKIDAHQNRV------ 503 (1008)
T ss_pred HHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---CcHHHHHHHHHHHHHCCCCEEEEEEeec------
Confidence 99999999999 899999999999999999999999999 9999999999999999999999998765
Q ss_pred CCCccccccccchHHH--HHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEE-EEeCC
Q 008323 453 VPCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLV-MRHGP 519 (570)
Q Consensus 453 ~~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv-~~hG~ 519 (570)
. .+.+++ .++++++|+|++|+|+.++|.+++..|..+++|+|.+ ..|+.|++. +.++.
T Consensus 504 -----~----~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~ 565 (1008)
T TIGR01408 504 -----G----PETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHL 565 (1008)
T ss_pred -----C----hhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCC
Confidence 1 011222 5788999999999999999999999999999999997 699999984 44443
No 26
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.95 E-value=2.5e-27 Score=243.86 Aligned_cols=129 Identities=26% Similarity=0.315 Sum_probs=118.2
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
||+||||||+||+++++|+++||++|+|+|.|+|+.+||+||+||+.+|+ |++||++|+++|+++||+++++.+..+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999766
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc--------CCeEEEe-eeCCceEEEE
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--------NKITITA-ALGFDSFLVM 515 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~--------~kp~I~a-alG~~g~vv~ 515 (570)
| . +...++++++|+||+++|+.++|.+++..|... ++|+|++ ..|+.|++.+
T Consensus 78 i-----------------~-~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~v 138 (291)
T cd01488 78 I-----------------Q-DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARV 138 (291)
T ss_pred c-----------------C-chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEE
Confidence 5 1 223578999999999999999999999988654 4999998 6899999853
No 27
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-28 Score=255.64 Aligned_cols=143 Identities=22% Similarity=0.343 Sum_probs=132.7
Q ss_pred HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 008323 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (570)
Q Consensus 359 ~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~ 438 (570)
++.+++.|||||||||+||++.|+|++.|+++|+|||-|+|+.|||+|||||+.+|+ |++||.+|++..++.||.++
T Consensus 7 ~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn~~ 83 (603)
T KOG2013|consen 7 HEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPNIK 83 (603)
T ss_pred HHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCCCc
Confidence 578899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEE-EE
Q 008323 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLV-MR 516 (570)
Q Consensus 439 v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv-~~ 516 (570)
+..+..+| .+.+...++++++|+|+.|.|++++|.++|++|.....|+|.. +-||.||+. +.
T Consensus 84 l~~yhanI----------------~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii 147 (603)
T KOG2013|consen 84 LVPYHANI----------------KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVII 147 (603)
T ss_pred eEeccccc----------------cCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEe
Confidence 99998877 2334567899999999999999999999999999999999986 789999994 66
Q ss_pred eCCC
Q 008323 517 HGPG 520 (570)
Q Consensus 517 hG~~ 520 (570)
+|.+
T Consensus 148 ~GkT 151 (603)
T KOG2013|consen 148 KGKT 151 (603)
T ss_pred cCCc
Confidence 6653
No 28
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=8.3e-27 Score=263.88 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=139.8
Q ss_pred hhhhhhhhc-CCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHH
Q 008323 345 NLKLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (570)
Q Consensus 345 nlr~~r~rl-lp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Ka 423 (570)
..+|.||+. ++..+|++|+++||+|+|+||+||++|++|+++|||+|+|+|+|+|+.||++||++|+.+|+ |++|+
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G~~Kv 99 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---GRPKL 99 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---CCHHH
Confidence 578999974 45567999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC--hHhhHHHHHHHHhcCCe
Q 008323 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKI 501 (570)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~l~~~~~~~~~kp 501 (570)
++++++|+++||.++|+.+...| +.+++.++++++|+||+|+|+ .+.|.+++..|+++++|
T Consensus 100 ~v~~~~l~~inP~~~I~~~~~~i-----------------~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP 162 (679)
T PRK14851 100 AVMKEQALSINPFLEITPFPAGI-----------------NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIP 162 (679)
T ss_pred HHHHHHHHHhCCCCeEEEEecCC-----------------ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 99999999999999999998655 457888999999999999996 57899999999999999
Q ss_pred EEEe-eeCCceEEEEE
Q 008323 502 TITA-ALGFDSFLVMR 516 (570)
Q Consensus 502 ~I~a-alG~~g~vv~~ 516 (570)
+|++ ..|+.|++.+.
T Consensus 163 ~i~~g~~G~~g~~~~~ 178 (679)
T PRK14851 163 VITAGPLGYSSAMLVF 178 (679)
T ss_pred EEEeecccccceEEEE
Confidence 9998 68999998754
No 29
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.94 E-value=9.3e-27 Score=251.13 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=140.4
Q ss_pred hhhhh-hcCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHH
Q 008323 347 KLMRW-RQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMA 425 (570)
Q Consensus 347 r~~r~-rllp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaea 425 (570)
||+|| |+|+..||++|.+++|+|+|+||+||+++++|++.|||+|||+|++.|+.+|++||++++.+|+ |++||++
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~~ 78 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAEA 78 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHHH
Confidence 79999 5777778999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 426 AVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 426 aa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
++++|+++||+|+++.+..++ ..-.+...++++++|+||.+.++...+..++.+|+.+++|+|.+
T Consensus 79 ~~~~L~eLNp~V~i~~~~e~~---------------~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~ 143 (425)
T cd01493 79 TCELLQELNPDVNGSAVEESP---------------EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYV 143 (425)
T ss_pred HHHHHHHHCCCCEEEEEeccc---------------chhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999886433 00123446789999999999999999999999999999999998
Q ss_pred -eeCCceEEEEEeCC
Q 008323 506 -ALGFDSFLVMRHGP 519 (570)
Q Consensus 506 -alG~~g~vv~~hG~ 519 (570)
+.|+.|++.+..+.
T Consensus 144 ~s~G~~G~v~v~~~~ 158 (425)
T cd01493 144 RSYGLYGYIRIQLKE 158 (425)
T ss_pred ecccCEEEEEEEECC
Confidence 79999999877664
No 30
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=266.17 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=139.4
Q ss_pred hhhhhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCc
Q 008323 343 DLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (570)
Q Consensus 343 dlnlr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~ 421 (570)
=.+.+|.||+ +++..+|++|+++||+|+||||+||++|++|+++|||+|+|+|.|+|+.||++||++|+.+|+ |++
T Consensus 310 ~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dI---G~~ 386 (989)
T PRK14852 310 YTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASF---GRG 386 (989)
T ss_pred HHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhC---CCh
Confidence 3466899996 456667999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCCh--HhhHHHHHHHHhcC
Q 008323 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTN 499 (570)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~l~~~~~~~~~ 499 (570)
||++++++|+++||.++|+.+...| +.+++.++++++|+||+|+|+. +.|..++..|++++
T Consensus 387 Kaevaa~~l~~INP~v~I~~~~~~I-----------------~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~ 449 (989)
T PRK14852 387 KLDVMTERALSVNPFLDIRSFPEGV-----------------AAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG 449 (989)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCC-----------------CHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC
Confidence 9999999999999999999997554 5678899999999999999974 56777777899999
Q ss_pred CeEEEe-eeCCceEEEEE
Q 008323 500 KITITA-ALGFDSFLVMR 516 (570)
Q Consensus 500 kp~I~a-alG~~g~vv~~ 516 (570)
+|+|.+ ..|+.|++.+.
T Consensus 450 IP~I~ag~~G~~g~v~v~ 467 (989)
T PRK14852 450 IPVITAGPLGYSCALLVF 467 (989)
T ss_pred CCEEEeeccccCeeEEEE
Confidence 999998 68999998754
No 31
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=2.7e-26 Score=212.51 Aligned_cols=132 Identities=31% Similarity=0.361 Sum_probs=121.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
||+|+|+||+||++|++|+++|+++|+++|+|.|+++|++||++++.+|+ |++|+++++++|+++||.++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999765
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEEEEe
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv~~h 517 (570)
+ +.....++++++|+||+|+|+.+.|+.++.+|+++++|+|++ ..|+.|++....
T Consensus 78 ~-----------------~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 78 I-----------------SEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 4 223346788999999999999999999999999999999998 688999987554
No 32
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=2.1e-26 Score=247.83 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=120.8
Q ss_pred eEEEEcCchHHHHHHHHHHHccC-----CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV-----~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
||+||||||+||+++++|+++|| |+|+++|.|+|+.|||+||+||+.+|+ |++||++|+++++++||+++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence 69999999999999999999999 999999999999999999999999999 9999999999999999999999
Q ss_pred EEeeccCCCCCCCCCccccccccchH-HHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceEEEEE
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCR-RLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMR 516 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~-~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~vv~~ 516 (570)
.+..++ .+ .+.+ ...++++++|+|++|+|+.++|.+++..|+.+++|+|.+ ++|+.|++.+.
T Consensus 78 a~~~~v-----------~~---~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~ 141 (435)
T cd01490 78 ALQNRV-----------GP---ETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVV 141 (435)
T ss_pred EEeccc-----------Ch---hhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEE
Confidence 998655 00 0111 125788999999999999999999999999999999998 69999998543
No 33
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.94 E-value=2.8e-26 Score=226.92 Aligned_cols=139 Identities=25% Similarity=0.230 Sum_probs=125.6
Q ss_pred CCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhh
Q 008323 354 LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI 433 (570)
Q Consensus 354 lp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~i 433 (570)
++..+|++|++++|+|+||||+||++|++|+++||++|+|+|.|.|+.+|++||+++ .+|+ |++|+++++++|+++
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka~~a~~~l~~l 93 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKVEALKENLLEI 93 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHHHHHHHHHHHH
Confidence 455679999999999999999999999999999999999999999999999999876 7888 999999999999999
Q ss_pred CCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc-CCeEEEe-eeCCce
Q 008323 434 FPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDS 511 (570)
Q Consensus 434 nP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~-~kp~I~a-alG~~g 511 (570)
||.++++.+...+ +.+++.++++++|+||+|+|+.++|..++..|.++ ++|+|.+ +.|..+
T Consensus 94 np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 94 NPFVEIEAHNEKI-----------------DEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred CCCCEEEEEeeec-----------------CHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 9999999987654 34667788999999999999999999999999998 9999987 455555
Q ss_pred EE
Q 008323 512 FL 513 (570)
Q Consensus 512 ~v 513 (570)
++
T Consensus 157 ~~ 158 (212)
T PRK08644 157 DS 158 (212)
T ss_pred Cc
Confidence 54
No 34
>PRK07877 hypothetical protein; Provisional
Probab=99.93 E-value=5.3e-26 Score=258.09 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=131.4
Q ss_pred hhhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccC-CeEEEEeCCcccccCCCcccCCCcccccCCCCcH
Q 008323 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (570)
Q Consensus 345 nlr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K 422 (570)
..||.|++ +++..+|++|+++||+|+|+| +||.+|.+|+++|| |+|+|||.|.|+.|||+|| +|+..|+ |++|
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di---G~~K 161 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL---GVNK 161 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc---ccHH
Confidence 46899997 567778999999999999997 99999999999996 9999999999999999998 6899999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
|++++++|+++||.++|+.+...| +.+++.++++++|+||+|+|+.++|.+++..|.+++||+
T Consensus 162 v~~a~~~l~~inp~i~v~~~~~~i-----------------~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 162 AVVAARRIAELDPYLPVEVFTDGL-----------------TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998665 568899999999999999999999999999999999999
Q ss_pred EEee
Q 008323 503 ITAA 506 (570)
Q Consensus 503 I~aa 506 (570)
|.++
T Consensus 225 i~~~ 228 (722)
T PRK07877 225 LMAT 228 (722)
T ss_pred EEEc
Confidence 9985
No 35
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.93 E-value=8.9e-26 Score=225.95 Aligned_cols=131 Identities=23% Similarity=0.253 Sum_probs=121.2
Q ss_pred CcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhC
Q 008323 355 PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (570)
Q Consensus 355 p~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~in 434 (570)
+..+|++|++++|+|+|+||+||++|++|+++||++|+|+|+|.|+.+|++||++++.+|+ |++|+++++++|+++|
T Consensus 2 G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~in 78 (231)
T cd00755 2 GEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDIN 78 (231)
T ss_pred CHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHHC
Confidence 4567999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhc-cCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 435 P~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
|+++++.+...+ +.++..+++. ++|+||+|+|+.+++..++.+|+.+++|+|.+
T Consensus 79 P~~~V~~~~~~i-----------------~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 79 PECEVDAVEEFL-----------------TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CCcEEEEeeeec-----------------CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 999999987554 3456666664 69999999999999999999999999999986
No 36
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.93 E-value=1e-25 Score=229.54 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=127.8
Q ss_pred hhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHH
Q 008323 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (570)
Q Consensus 346 lr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kae 424 (570)
.||.|+. +++..+|++|++++|+|+|+||+||++|++|+++||++|+|+|.|.|+.+|++||+++..+|+ |++|++
T Consensus 11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v---G~~Kve 87 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV---GLAKAE 87 (268)
T ss_pred HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc---ChHHHH
Confidence 5799996 556777999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhc-cCCEEEEecCChHhhHHHHHHHHhcCCeEE
Q 008323 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (570)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I 503 (570)
+++++++++||.++++.+...+ +.++..+++. ++|+||+|+|+..++..++.+|+.+++|+|
T Consensus 88 ~~~~rl~~INP~~~V~~i~~~i-----------------~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I 150 (268)
T PRK15116 88 VMAERIRQINPECRVTVVDDFI-----------------TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLV 150 (268)
T ss_pred HHHHHHHhHCCCcEEEEEeccc-----------------ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999886433 3456666664 799999999999999999999999999999
Q ss_pred Ee
Q 008323 504 TA 505 (570)
Q Consensus 504 ~a 505 (570)
.+
T Consensus 151 ~~ 152 (268)
T PRK15116 151 TT 152 (268)
T ss_pred EE
Confidence 86
No 37
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.92 E-value=5.2e-25 Score=257.95 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=138.8
Q ss_pred hhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHH
Q 008323 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (570)
Q Consensus 346 lr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kae 424 (570)
.+|+||+ +++..+|++|++++|||+||||||++||++|+++||++|+|+|+|.|+.+|++||++++.+|+ |++||+
T Consensus 5 ~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~Kae 81 (1008)
T TIGR01408 5 ALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRNRAE 81 (1008)
T ss_pred hhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---CchHHH
Confidence 4699996 556667999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcC--CeE
Q 008323 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN--KIT 502 (570)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~--kp~ 502 (570)
+++++|+++||.|+++.+...+ + .++++++|+||+|.|+.+.|..++.+|+.++ +|+
T Consensus 82 a~~~~L~eLNp~V~V~~~~~~l-----------------~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~f 140 (1008)
T TIGR01408 82 AVVKKLAELNPYVHVSSSSVPF-----------------N----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAF 140 (1008)
T ss_pred HHHHHHHHHCCCceEEEecccC-----------------C----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999886433 2 3578999999999999999999999999999 889
Q ss_pred EEe-eeCCceEEEEEeCC
Q 008323 503 ITA-ALGFDSFLVMRHGP 519 (570)
Q Consensus 503 I~a-alG~~g~vv~~hG~ 519 (570)
|.+ +.|+.|+++.+.|.
T Consensus 141 I~~~~~G~~G~vf~D~g~ 158 (1008)
T TIGR01408 141 ISADVRGLFGSLFCDFGD 158 (1008)
T ss_pred EEEeecceEEEEEecCCC
Confidence 998 79999999998885
No 38
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=1.2e-24 Score=209.05 Aligned_cols=128 Identities=28% Similarity=0.290 Sum_probs=114.8
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
||+|+|+||+||++|++|+++||++|+|+|.|.|+.+|++||+++ .+|+ |++|+++++++|+++||.++++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQI---GEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 699999999999999999999999999999999999999999954 6888 999999999999999999999998765
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc-CCeEEEe-eeCCceEEE
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDSFLV 514 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~-~kp~I~a-alG~~g~vv 514 (570)
+ +.+++.++++++|+||+|+|+.++|..++..|.++ ++|+|.+ +.|+.|++.
T Consensus 77 ~-----------------~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~ 130 (174)
T cd01487 77 I-----------------DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSN 130 (174)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeE
Confidence 4 44677889999999999999999998777766665 9999987 677777765
No 39
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.92 E-value=2.4e-24 Score=211.43 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=119.2
Q ss_pred CcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhC
Q 008323 355 PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (570)
Q Consensus 355 p~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~in 434 (570)
+...|++|+++||+|+|+||+||++|++|+++||++|+|+|.|.|+.+|++||. |..+|+ |++|+++++++|+++|
T Consensus 12 ~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~i---G~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 12 TPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQV---GEPKTEALKENISEIN 87 (200)
T ss_pred CHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhC---CCHHHHHHHHHHHHHC
Confidence 345699999999999999999999999999999999999999999999999997 567889 9999999999999999
Q ss_pred CCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHH-HHHHHhcCCeEEEeeeCCceEE
Q 008323 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLP-TLLCANTNKITITAALGFDSFL 513 (570)
Q Consensus 435 P~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~-~~~~~~~~kp~I~aalG~~g~v 513 (570)
|.++++.+...+ +.+++.++++++|+||.|+|+.++|..+ +.+++.++.+.+-++.|+.||.
T Consensus 88 p~~~i~~~~~~i-----------------~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~ 150 (200)
T TIGR02354 88 PYTEIEAYDEKI-----------------TEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYD 150 (200)
T ss_pred CCCEEEEeeeeC-----------------CHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCC
Confidence 999999987654 4577888899999999999999999875 5555565554443356777765
No 40
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.5e-25 Score=224.46 Aligned_cols=141 Identities=27% Similarity=0.352 Sum_probs=126.9
Q ss_pred hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCc
Q 008323 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV 437 (570)
Q Consensus 358 ~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v 437 (570)
+++.+.++||||||||||||++.|+|++.|++.+.+||-|+|+.+|++|||||+..|+ |++||++||+.+.+..|+.
T Consensus 34 ~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 34 NLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred HHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhCCCc
Confidence 4577788999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc---C-------CeEEEe-e
Q 008323 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT---N-------KITITA-A 506 (570)
Q Consensus 438 ~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~---~-------kp~I~a-a 506 (570)
.|..+..+| .+.-.++.+++|+|++..|+.++|+++|.+.... | +|+|++ .
T Consensus 111 ~v~~h~~kI------------------qd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGt 172 (422)
T KOG2015|consen 111 VVVPHRQKI------------------QDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGT 172 (422)
T ss_pred EEeeeecch------------------hcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCc
Confidence 999887665 2445788999999999999999999998877542 3 599998 6
Q ss_pred eCCceEE-EEEeCC
Q 008323 507 LGFDSFL-VMRHGP 519 (570)
Q Consensus 507 lG~~g~v-v~~hG~ 519 (570)
-||.|++ ++.+|.
T Consensus 173 EG~KG~arvI~Pg~ 186 (422)
T KOG2015|consen 173 EGFKGHARVIYPGI 186 (422)
T ss_pred ccccceeEEEecCc
Confidence 8999998 577765
No 41
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.90 E-value=5.8e-24 Score=222.22 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=124.6
Q ss_pred hhhhhhhcCCcc-----hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCC
Q 008323 346 LKLMRWRQLPSL-----NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (570)
Q Consensus 346 lr~~r~rllp~l-----~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk 420 (570)
.||.||.+++++ +|++|++++|+ |||+|+.+|..|++ |||+|+|||+|.|+.||++ .||+.+|+ |+
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di---G~ 123 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI---LK 123 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc---Cc
Confidence 589999988652 49999999999 99999999999999 9999999999999999999 99999999 99
Q ss_pred cHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHH--HHHHHHhc
Q 008323 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWL--PTLLCANT 498 (570)
Q Consensus 421 ~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l--~~~~~~~~ 498 (570)
+|+++|+++|.++||.++++.+ .++++++|+|++|+|+.+.|.+ +|+.|.++
T Consensus 124 ~K~~~a~~~L~~lnp~v~i~~~--------------------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~ 177 (318)
T TIGR03603 124 KDIRDLTSNLDALELTKNVDEL--------------------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKET 177 (318)
T ss_pred HHHHHHHHHHHHhCCCCEEeeH--------------------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHH
Confidence 9999999999999999988642 3578999999999999999977 99999999
Q ss_pred CCeEEEe-eeCCceEEEE
Q 008323 499 NKITITA-ALGFDSFLVM 515 (570)
Q Consensus 499 ~kp~I~a-alG~~g~vv~ 515 (570)
++|+|.+ ..|+.|++..
T Consensus 178 ~~PlV~gav~g~~Gqv~~ 195 (318)
T TIGR03603 178 KKPNTIAFIDGPFVFITC 195 (318)
T ss_pred CCCEEEEEEccCEEEEEE
Confidence 9999987 6899999764
No 42
>PRK06153 hypothetical protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=220.66 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=114.4
Q ss_pred HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCccc-CCCcccccCCCC--cHHHHHHHHHHhhCC
Q 008323 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS-LYTLDDCLNGGD--FKAMAAVKSLERIFP 435 (570)
Q Consensus 359 ~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~-L~~~~Dv~~~Gk--~Kaeaaa~~L~~inP 435 (570)
+++|++++|+||||||+||+|+..|++.||++|+|||.|.|+.+|++||+ +|+.+|+ |+ +||+++++++.+++|
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999998 6789999 88 999999999999998
Q ss_pred CcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEeeeCC
Q 008323 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGF 509 (570)
Q Consensus 436 ~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~aalG~ 509 (570)
.+ ..+...| +.+++. .+.++|+||+|+|+.++|.+++..|.++++|+|++++|.
T Consensus 248 ~I--~~~~~~I-----------------~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l 301 (393)
T PRK06153 248 GI--VPHPEYI-----------------DEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGL 301 (393)
T ss_pred eE--EEEeecC-----------------CHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecc
Confidence 54 4444332 344544 568999999999999999999999999999999986554
No 43
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.3e-24 Score=240.67 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=158.6
Q ss_pred ccccceEec---CCcccceE----eccccCCChh--hh-hHHhhhhhhhhhhhhcCCcch-HhhhccCeEEEEcCchHHH
Q 008323 309 PNTVGWELN---KGRKVPRC----ISLAKSMDPT--RL-AISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGC 377 (570)
Q Consensus 309 ~~~~gwe~~---~gk~~p~~----~dl~~~~dp~--~l-~~~~~dlnlr~~r~rllp~l~-~~~L~~~kVlIlGaGgLG~ 377 (570)
.+++++|.- +||+.|.. .|--+++.-. .+ .+.....+.||+-|+.+-+.+ |++|.+.|+.+||||++||
T Consensus 364 GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGC 443 (1013)
T KOG2012|consen 364 GGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGC 443 (1013)
T ss_pred hhhhHHHHHHhhccCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhH
Confidence 456777743 89999974 4544443210 11 234456688999998763333 8999999999999999999
Q ss_pred HHHHHHHHccC-----CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCC
Q 008323 378 QVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHP 452 (570)
Q Consensus 378 ~VA~~La~~GV-----~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~ 452 (570)
|..||++.+|| |+|++.|.|.||.|||+|||||+..|+ |++|+++||++...+||.+++.++..++ |
T Consensus 444 E~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rv---g-- 515 (1013)
T KOG2012|consen 444 ELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRV---G-- 515 (1013)
T ss_pred HHHHhhhheeeccCCCCceEEeccchhhhccccceeecccccc---CchHHHHHHHHHHhcCCCceeeehhhcc---C--
Confidence 99999999999 589999999999999999999999999 9999999999999999999999998776 1
Q ss_pred CCCccccccccchHHH--HHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe-eeCCceE--EEEEeC
Q 008323 453 VPCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSF--LVMRHG 518 (570)
Q Consensus 453 ~~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a-alG~~g~--vv~~hG 518 (570)
. +.|.+ ++++..-|+|..+.||.++|.+++.-|..+.||++.+ ++|..|. +|+-|-
T Consensus 516 --p--------eTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhl 576 (1013)
T KOG2012|consen 516 --P--------ETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHL 576 (1013)
T ss_pred --c--------ccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEeccc
Confidence 1 12222 6788999999999999999999999999999999987 7999885 455553
No 44
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-22 Score=204.81 Aligned_cols=165 Identities=21% Similarity=0.269 Sum_probs=148.5
Q ss_pred CChhhhhHHhhhhhhhhhhhhcCCcch-HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCC
Q 008323 332 MDPTRLAISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLY 410 (570)
Q Consensus 332 ~dp~~l~~~~~dlnlr~~r~rllp~l~-~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~ 410 (570)
|+-.+++++...+ |+||+.+|+++ |++|+++||||+|.+++|.++|++|+++||+++|++|+-.|....++-|||+
T Consensus 1 m~~~else~E~al---YDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli 77 (331)
T KOG2014|consen 1 MKGEELSEQEIAL---YDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLI 77 (331)
T ss_pred CchhhhhHHHHHH---HHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEE
Confidence 4455677777776 99998776665 9999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHH
Q 008323 411 TLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWL 490 (570)
Q Consensus 411 ~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l 490 (570)
..+++ |+.||++..++++.+||.|++.....++ .+..++++.++|+||..--+++.+..
T Consensus 78 ~~~~v---g~~raeas~erl~~LNPmV~v~~d~edl------------------~ek~eeff~qFdlVV~~~~s~e~~~k 136 (331)
T KOG2014|consen 78 SASSV---GQTRAEASLERLQDLNPMVDVSVDKEDL------------------SEKDEEFFTQFDLVVATDQSREEKCK 136 (331)
T ss_pred chhhh---chHHHHHHHHHHHhcCCceEEEechhhh------------------hhcchhhhhceeEEEEeccchhhhhh
Confidence 99999 9999999999999999999999876544 24458899999999999999999999
Q ss_pred HHHHHHhcCCeEEEe-eeCCceEEEEEeCCC
Q 008323 491 PTLLCANTNKITITA-ALGFDSFLVMRHGPG 520 (570)
Q Consensus 491 ~~~~~~~~~kp~I~a-alG~~g~vv~~hG~~ 520 (570)
+|.+|++++++++.+ ..|+.||.+...+..
T Consensus 137 vn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h 167 (331)
T KOG2014|consen 137 VNEICRKLNIAFYAGDCFGLCGYAFADLQEH 167 (331)
T ss_pred HHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence 999999999999987 799999999876654
No 45
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.88 E-value=1.2e-22 Score=200.60 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=127.5
Q ss_pred hhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHH
Q 008323 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (570)
Q Consensus 346 lr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kae 424 (570)
.|+-|-. ++++.++++|++.+|+|+|+||+|+.++..|+|.|+|+|+|||.|.|..+|+|||.-....++ |++|++
T Consensus 11 ~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i---Gk~Kv~ 87 (263)
T COG1179 11 QRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI---GKPKVE 87 (263)
T ss_pred HHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---ccHHHH
Confidence 3444443 557778999999999999999999999999999999999999999999999999998888899 999999
Q ss_pred HHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhc-cCCEEEEecCChHhhHHHHHHHHhcCCeEE
Q 008323 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (570)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I 503 (570)
+++++++.|||..++.++..-+ +.+++++++. ++|.||+|.|+..+...+-..|..+++|+|
T Consensus 88 vm~eri~~InP~c~V~~~~~f~-----------------t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vI 150 (263)
T COG1179 88 VMKERIKQINPECEVTAINDFI-----------------TEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVI 150 (263)
T ss_pred HHHHHHHhhCCCceEeehHhhh-----------------CHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999987644 6788888775 599999999999999999999999999999
Q ss_pred Ee
Q 008323 504 TA 505 (570)
Q Consensus 504 ~a 505 (570)
..
T Consensus 151 ss 152 (263)
T COG1179 151 SS 152 (263)
T ss_pred ee
Confidence 75
No 46
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.86 E-value=1.3e-21 Score=196.97 Aligned_cols=130 Identities=19% Similarity=0.206 Sum_probs=112.8
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccC-----C-----eEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHh
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGV-----R-----KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER 432 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV-----~-----~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~ 432 (570)
+..||+||||||+||+++++|+++|+ | +|+++|+|+|+.+|++|| +|...|+ |++||+++++++++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dV---G~~Ka~v~~~ri~~ 85 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV---GQNKAIVLVNRLNQ 85 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHC---CcHHHHHHHHHHHh
Confidence 67899999999999999999999973 4 999999999999999999 6788999 99999999999999
Q ss_pred hCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHh---cCCeEEEee-eC
Q 008323 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN---TNKITITAA-LG 508 (570)
Q Consensus 433 inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~---~~kp~I~aa-lG 508 (570)
++ +++++.+...+ +. .+++.++|+||+|+|+.++|..++..|.+ .++|+++++ -+
T Consensus 86 ~~-~~~i~a~~~~~-----------------~~---~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~ 144 (244)
T TIGR03736 86 AM-GTDWTAHPERV-----------------ER---SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRA 144 (244)
T ss_pred cc-CceEEEEEeee-----------------Cc---hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCC
Confidence 98 88999887655 11 22356899999999999999999999987 348999984 67
Q ss_pred CceEEEEEe
Q 008323 509 FDSFLVMRH 517 (570)
Q Consensus 509 ~~g~vv~~h 517 (570)
..|++++-.
T Consensus 145 ~~gqv~~g~ 153 (244)
T TIGR03736 145 DDGQVILGQ 153 (244)
T ss_pred CCCcEEEEe
Confidence 888887653
No 47
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.84 E-value=5.4e-21 Score=190.66 Aligned_cols=98 Identities=20% Similarity=0.250 Sum_probs=90.6
Q ss_pred hhhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHH
Q 008323 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (570)
Q Consensus 345 nlr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Ka 423 (570)
..||+||+ +++..+|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++++. |+ |++||
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---Gk~KA 81 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---GGTRG 81 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---CCcHH
Confidence 46899996 456667999999999999999999999999999999999999999999999999999996 67 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecc
Q 008323 424 MAAVKSLERIFPAVAAEGVVMAI 446 (570)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~I 446 (570)
++++++|+++||.|+++.+...+
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rl 104 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKL 104 (287)
T ss_pred HHHHHHHHHHCCCcEEEEccccc
Confidence 99999999999999999887544
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.1e-19 Score=199.57 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=142.1
Q ss_pred Hhhhhhhhhhhhh-cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCC
Q 008323 340 SAADLNLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNG 418 (570)
Q Consensus 340 ~~~dlnlr~~r~r-llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~ 418 (570)
+.+|.+ -|.||+ .++...+++|.+++|||.|+||||-||||||+++||+++||.|...+..++|..|++++++|+
T Consensus 13 ~~IDE~-LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di--- 88 (1013)
T KOG2012|consen 13 QEIDES-LYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI--- 88 (1013)
T ss_pred hhhhhh-hhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---
Confidence 345543 389998 567777899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc
Q 008323 419 GDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT 498 (570)
Q Consensus 419 Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~ 498 (570)
|+++|++..++|+++|+.|.|..+... ..+++++++++||++--+.+....++.+|+++
T Consensus 89 gknRA~as~~~LaeLN~yV~V~v~t~~---------------------~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~ 147 (1013)
T KOG2012|consen 89 GKNRAEASVEKLAELNNYVPVVVLTGP---------------------LTEEFLSDFQVVVLTDASLEEQLKINDFCHSH 147 (1013)
T ss_pred CCchHHHHHHHHHHhhcceeeEEecCc---------------------ccHHHHhCCcEEEEecCchHHHHHHHHHHHhc
Confidence 999999999999999999999988632 22678899999999999999999999999999
Q ss_pred CCeEEEe-eeCCceEEEEEeCCC
Q 008323 499 NKITITA-ALGFDSFLVMRHGPG 520 (570)
Q Consensus 499 ~kp~I~a-alG~~g~vv~~hG~~ 520 (570)
++.+|.+ ..|+.|+++++.|..
T Consensus 148 ~i~fi~ad~RGLfg~lFCDFG~e 170 (1013)
T KOG2012|consen 148 GIAFIAADTRGLFGQLFCDFGEE 170 (1013)
T ss_pred CeEEEEeccchhhhhhhccCCCc
Confidence 9999999 899999999999963
No 49
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.7e-19 Score=186.94 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=140.8
Q ss_pred hhhhhh-hcCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHH
Q 008323 346 LKLMRW-RQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (570)
Q Consensus 346 lr~~r~-rllp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kae 424 (570)
.||+|| |+|+++||..|..++|+++|||++||+++++|++.|||.||+||...|+.+++..+|+...+++ |++||+
T Consensus 8 ~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---GksrA~ 84 (523)
T KOG2016|consen 8 TKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GKSRAE 84 (523)
T ss_pred hHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---chhHHH
Confidence 589999 5889999999999999999999999999999999999999999999999999999999888888 999999
Q ss_pred HHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEE
Q 008323 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (570)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~ 504 (570)
+..+.|+++||.|..+..... ...-..+..+++.++++|+.+--+.+....+.++|+.+++|+++
T Consensus 85 a~~e~LqeLN~~V~~~~vee~---------------p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~ 149 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEES---------------PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLL 149 (523)
T ss_pred HHHHHHHHhChhhhcCccccC---------------hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEE
Confidence 999999999999987766421 12234555778999999998877777888899999999999999
Q ss_pred e-eeCCceEEEE--EeCCCCCCcccc
Q 008323 505 A-ALGFDSFLVM--RHGPGPFSITHD 527 (570)
Q Consensus 505 a-alG~~g~vv~--~hG~~~~~~~~~ 527 (570)
+ ..|+.|++.+ .......+|+++
T Consensus 150 ~rs~Gl~G~iRI~ikEH~iieshPD~ 175 (523)
T KOG2016|consen 150 TRSYGLAGTIRISIKEHTIIESHPDN 175 (523)
T ss_pred EeeecceEEEEEEeeeccccccCCCC
Confidence 8 8999999853 333334444443
No 50
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.77 E-value=9.1e-19 Score=175.09 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=132.1
Q ss_pred hhhHHhhhhhhhhhhhhcCCcch----HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCC
Q 008323 336 RLAISAADLNLKLMRWRQLPSLN----LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411 (570)
Q Consensus 336 ~l~~~~~dlnlr~~r~rllp~l~----~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~ 411 (570)
++....+|-| .|.|-..+...| .+||+...|.|+|.||+|+-+|..|.|.|+|++.|.|.|.|+..|++|-| |+
T Consensus 51 klSsEVVDSN-PYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~ 128 (422)
T KOG2336|consen 51 KLSSEVVDSN-PYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQ 128 (422)
T ss_pred HhhhhHhcCC-hHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cC
Confidence 3455567754 577765444443 69999999999999999999999999999999999999999999999975 68
Q ss_pred cccccCCCCcHHHHHHHHHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhh-----------ccCCEEEE
Q 008323 412 LDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI-----------LSHDVIFL 480 (570)
Q Consensus 412 ~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li-----------~~~DvV~~ 480 (570)
++.+ |..|+++|.+.|..|||+|.++.++.+| .+.++.+.+. +..|+|..
T Consensus 129 P~Qa---GlsKv~AA~~TL~~iNPDV~iE~hn~NI----------------TTvenFd~F~~~is~g~~~~gkpvDLVLS 189 (422)
T KOG2336|consen 129 PDQA---GLSKVDAAVQTLAEINPDVVIEVHNYNI----------------TTVENFDTFTDRISNGSLCPGKPVDLVLS 189 (422)
T ss_pred cccc---cchHHHHHHHHHHhcCCCeEEEEeecce----------------eeehhHHHHHHHhhcCCCCCCCcceEEee
Confidence 8888 9999999999999999999999999887 1233333322 24799999
Q ss_pred ecCChHhhHHHHHHHHhcCCeEEEee---eCCceEE-EEEeCC
Q 008323 481 LTDTRESRWLPTLLCANTNKITITAA---LGFDSFL-VMRHGP 519 (570)
Q Consensus 481 ~tDs~e~R~l~~~~~~~~~kp~I~aa---lG~~g~v-v~~hG~ 519 (570)
|.|++|+|+.+|..|...+..++..+ -...|++ ++++|.
T Consensus 190 CVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGe 232 (422)
T KOG2336|consen 190 CVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGE 232 (422)
T ss_pred ehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCc
Confidence 99999999999999999998877542 3445665 355554
No 51
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2e-17 Score=167.80 Aligned_cols=133 Identities=26% Similarity=0.310 Sum_probs=119.8
Q ss_pred cCCcchHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHh
Q 008323 353 QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER 432 (570)
Q Consensus 353 llp~l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~ 432 (570)
.+++.++++|++.=|+||||||+|+.|+..|+|.|+++|.+||.|.|+.|.|+||...+..|+ |.||+.++++++++
T Consensus 63 FfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~clkkh~sk 139 (430)
T KOG2018|consen 63 FFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVMCLKKHFSK 139 (430)
T ss_pred hhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHHHHHHHHHh
Confidence 467778999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHh-hccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 433 inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
|.|...+++..+-. +.++-+++ ..+-|+|++|.||.++..-+-.+|..+++++|.+
T Consensus 140 iaPw~eIdar~~l~-----------------~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss 196 (430)
T KOG2018|consen 140 IAPWCEIDARNMLW-----------------TSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS 196 (430)
T ss_pred hCccceecHHHhhc-----------------CCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec
Confidence 99999998876432 22233333 3568999999999999999999999999999976
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.21 E-value=1.2e-10 Score=129.23 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=99.4
Q ss_pred HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 008323 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (570)
Q Consensus 359 ~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~ 438 (570)
-++.+++||+|+|.|++|+.++.+|++.|+++|..||.|.+ .+|++| + |+. ++.|++ .+|+++
T Consensus 124 F~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------I---gEl-~e~A~~----~n~~v~ 186 (637)
T TIGR03693 124 FELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------I---HEL-AEIAEE----TDDALL 186 (637)
T ss_pred hhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------H---HHH-HHHHHH----hCCCCc
Confidence 36669999999999999999999999999999999999999 999999 5 776 666555 899999
Q ss_pred EEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC--hHhhHHHHHHHHhcCCeEEEe-eeCCceEE
Q 008323 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITA-ALGFDSFL 513 (570)
Q Consensus 439 v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~l~~~~~~~~~kp~I~a-alG~~g~v 513 (570)
++.+.. ...+.+.+.++.+|+|++.+|+ .+.-..++..|.+.|+++|=+ ..|..+.+
T Consensus 187 v~~i~~------------------~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~li 246 (637)
T TIGR03693 187 VQEIDF------------------AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLA 246 (637)
T ss_pred eEeccC------------------CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceee
Confidence 998753 2357788899999999999994 455678999999999776654 44444433
No 53
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.14 E-value=8.6e-06 Score=75.17 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=62.4
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
..+++++|+|+|+||.|..++..|...|+++|+++.+ -..|++.+++.+ +...+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~ 61 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNI 61 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Ccccc
Confidence 4678999999999999999999999999999999654 133677777766 44455
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHh
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~ 487 (570)
.... .+.+.+.+.++|+||.||.....
T Consensus 62 ~~~~---------------------~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 62 EAIP---------------------LEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEE---------------------GGGHCHHHHTESEEEE-SSTTST
T ss_pred ceee---------------------HHHHHHHHhhCCeEEEecCCCCc
Confidence 5543 24455677899999999988654
No 54
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.11 E-value=1.6e-05 Score=85.56 Aligned_cols=98 Identities=21% Similarity=0.241 Sum_probs=74.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.+|+|||||++|+.||..|++.|..+|++.|.. +.|+..+++... + +++....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs----------------------~~~~~~i~~~~~---~--~v~~~~v 54 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS----------------------KEKCARIAELIG---G--KVEALQV 54 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHHHHhhcc---c--cceeEEe
Confidence 589999999999999999999999999997762 223333322221 2 5566665
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEee
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA 506 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~aa 506 (570)
++ .+.+.+.++++++|+||.|....-.+ .+-+.|.+.|+.+++.+
T Consensus 55 D~----------------~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts 99 (389)
T COG1748 55 DA----------------ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTS 99 (389)
T ss_pred cc----------------cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence 54 45688899999999999999876666 56778888899888764
No 55
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.98 E-value=2.4e-05 Score=81.21 Aligned_cols=56 Identities=36% Similarity=0.529 Sum_probs=47.3
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
++.++|+|+|+||+|..++..|+..|+++|+++|.+ ..|++.+++.+.+.++.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------------------~~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------------------PARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHHHhhCCCeEE
Confidence 456899999999999999999999999999998764 24888888888877766443
No 56
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.59 E-value=0.00034 Score=72.71 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=58.1
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
+++++|+|+|+||+|..++..|+..|+++|++++.+.- ...|++.+++.+.+..+.+.+..
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~-------------------~~~~a~~l~~~l~~~~~~~~~~~ 184 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD-------------------FYERAEQTAEKIKQEVPECIVNV 184 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch-------------------HHHHHHHHHHHHhhcCCCceeEE
Confidence 56789999999999999999999999999999876310 12356666777765555444432
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecC
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (570)
.. + .+.+.+.+.++.+|+||++|-
T Consensus 185 ~d--~----------------~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 185 YD--L----------------NDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred ec--h----------------hhhhHHHhhhccCCEEEEeCC
Confidence 22 1 122344455667788888773
No 57
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.56 E-value=0.00042 Score=65.74 Aligned_cols=117 Identities=24% Similarity=0.243 Sum_probs=90.7
Q ss_pred cCeEEEEcCchHHHHHHHHHH---HccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLM---AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La---~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.-.|.|+|||-||--+|-+|+ +-|..+|..+|+.+|++.++.---+ -.-+ |.+|++-++ +|.+..+.-.++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~---GEyKv~Fi~-rl~~~~f~r~V~ 91 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKV---GEYKVDFIK-RLGRVHFGRRVE 91 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCc---chhHHHHHH-HhCcCCCCceee
Confidence 447999999999999999998 4589999999999999998754322 2235 899998654 566677888888
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec---CChHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT---DTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t---Ds~e~R~l~~~~~~~~~kp~I~a 505 (570)
+.+..| +.+++..+.. |||+.|. |+...-..+-..|++.|+.-|..
T Consensus 92 a~pE~i-----------------t~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 92 AFPENI-----------------TKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred cccccc-----------------cccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 887554 5567766633 8877764 67777788889999999988764
No 58
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.56 E-value=0.00033 Score=75.28 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=67.6
Q ss_pred EEEEcCchHHHHHHHHHHHccCC-eEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 367 CLLLGAGTLGCQVARMLMAWGVR-KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 367 VlIlGaGgLG~~VA~~La~~GV~-~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
|+|+|+|.+|..+++.|++.+-- ++++.|.+ ..|++.+++.+ ...+++....+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~----------------------~~~~~~~~~~~----~~~~~~~~~~d 54 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRN----------------------PEKAERLAEKL----LGDRVEAVQVD 54 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESS----------------------HHHHHHHHT------TTTTEEEEE--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECC----------------------HHHHHHHHhhc----cccceeEEEEe
Confidence 78999999999999999999854 89997762 33555555544 23345555554
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
+ .+.+.+.++++++|+||+|.... .-..+-+.|.+.|+.+|+.
T Consensus 55 ~----------------~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 55 V----------------NDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp T----------------TTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred c----------------CCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 4 34567899999999999999776 5557888999999999984
No 59
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.42 E-value=0.00058 Score=70.98 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.7
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|+|+||.|..++..|+..|+.+|+++|.+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 346899999999999999999999999999998763
No 60
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.35 E-value=0.0012 Score=65.22 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=63.0
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|++++|+|||.|.+|...++.|...| .+|++|+++. . +.+ .+...+ -.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------~~l-----------~~l~~~----~~i~ 57 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------ENL-----------VKLVEE----GKIR 57 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------HHH-----------HHHHhC----CCEE
Confidence 478999999999999999999999999 7999986521 0 001 111111 1122
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
...... . ...+.++|+||.||++.+.-..+...|. .++++-.+
T Consensus 58 ~~~~~~-----------------~----~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lvn~~ 100 (202)
T PRK06718 58 WKQKEF-----------------E----PSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALFNVI 100 (202)
T ss_pred EEecCC-----------------C----hhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcEEEC
Confidence 221110 1 2345789999999999998888888884 46655433
No 61
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.31 E-value=0.00088 Score=69.79 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=42.3
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhh
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI 433 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~i 433 (570)
+++++|+|+|+||.+..|+-.|+..|+++|++++.+.= ...|++.+++.+...
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------------------~~~ka~~la~~~~~~ 174 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------------------FFDKALAFAQRVNEN 174 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------------------HHHHHHHHHHHhhhc
Confidence 46789999999999999999999999999999876310 134777777776543
No 62
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.27 E-value=0.00084 Score=69.61 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=32.5
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|||+||.|..++..|+..|+++|++++.
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 56789999999999999999999999999999765
No 63
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.14 E-value=0.0051 Score=61.01 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=67.9
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
|++++|+|||.|.+|..-++.|+..| .++|+|+++.- .++ + .+.+.. +++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVvsp~~~-------------~~l--------~----~l~~~~---~i~~ 57 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG-AQLRVIAEELE-------------SEL--------T----LLAEQG---GITW 57 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC-CEEEEEcCCCC-------------HHH--------H----HHHHcC---CEEE
Confidence 67899999999999999999999999 58999987421 111 1 111111 2333
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
+..+. . ...+.++|+||.+||..+....+-..|+..++++-.+
T Consensus 58 ~~~~~-------------------~--~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 58 LARCF-------------------D--ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EeCCC-------------------C--HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 33211 1 2345899999999999988888999999999988544
No 64
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.12 E-value=0.0013 Score=71.42 Aligned_cols=77 Identities=34% Similarity=0.425 Sum_probs=62.5
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|++++|||||+|-.|.-+|++|...|+++|++ .||+ .-||+.+|+++. ++
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT------------~erA~~La~~~~-------~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRT------------LERAEELAKKLG-------AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCC------------HHHHHHHHHHhC-------Ce
Confidence 478999999999999999999999999999999 3443 347777787776 22
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHh
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~ 487 (570)
.. ..+++.+.+.++|+||.+|.+...
T Consensus 226 ~~---------------------~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 226 AV---------------------ALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred ee---------------------cHHHHHHhhhhCCEEEEecCCCcc
Confidence 22 347888899999999999988653
No 65
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.11 E-value=0.00083 Score=59.14 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=63.5
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|++++|+|||.|.+|..-++.|+..| .++|++.++. +.+ . ..++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~--------------~~~-----------~-------~~i~~~ 50 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI--------------EFS-----------E-------GLIQLI 50 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE--------------HHH-----------H-------TSCEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch--------------hhh-----------h-------hHHHHH
Confidence 468999999999999999999999999 8999988864 011 0 112221
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
.. . .++.++++|+||.++++.+....+-..|+.+++|+-.+
T Consensus 51 --~~-------------------~---~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 51 --RR-------------------E---FEEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --ES-------------------S----GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --hh-------------------h---HHHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 11 0 12336889999999999999999999999999987655
No 66
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.11 E-value=0.0041 Score=65.36 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=59.7
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
+.+.+|+|+|+|.+|..+++.|...|+.+|+++|.+ ..|++.+++.+. . . .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------------------~~ra~~la~~~g----~-~--~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------------------YERAEELAKELG----G-N--A 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------------------HHHHHHHHHHcC----C-e--E
Confidence 678999999999999999999999999999997752 235555555542 1 1 1
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHH
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLL 494 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~ 494 (570)
. ..+.+.+.+.++|+||.||.+.+....+..+
T Consensus 227 ~---------------------~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 227 V---------------------PLDELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred E---------------------eHHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 1 1234556678899999999987763333333
No 67
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.08 E-value=0.0016 Score=71.21 Aligned_cols=78 Identities=24% Similarity=0.288 Sum_probs=57.8
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.+.+++|+|+|+|+.|..++++|...|+.+|+++... ..|++.+++.+. ...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------------------~~ra~~La~~~~----~~~-- 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------------------IEKAQKITSAFR----NAS-- 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHhc----CCe--
Confidence 4678999999999999999999999999999994431 125555555442 111
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHh
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~ 487 (570)
.+ ..+.+.+.+.++|+||.||.+...
T Consensus 230 ~~---------------------~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 230 AH---------------------YLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred Ee---------------------cHHHHHHHhccCCEEEECcCCCCe
Confidence 11 235667888999999999988553
No 68
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0014 Score=68.15 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=43.1
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP 435 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP 435 (570)
++++|+|+|+||.+..|+..|+..|+.+|+++.. -..|++.+++.+.+..+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGA 175 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc
Confidence 5789999999999999999999999999999665 34577778877776553
No 69
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.98 E-value=0.0021 Score=66.43 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.2
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++|+|+|+||+|..+++.|...|+.+|++++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 356789999999999999999999999999999876
No 70
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.83 E-value=0.0072 Score=51.65 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=58.5
Q ss_pred eEEEEcCchHHHHHHHHHHHccC--CeEEEE-eCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV--RKITLL-DNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV--~~ItlV-D~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
||.|||+|.+|..+++.|++.|+ .+|.++ +. ...|++.+++ .++ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~~~~----~~~-~~~~~- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAELAK----EYG-VQATA- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHHHHH----HCT-TEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHHHHH----hhc-ccccc-
Confidence 68999999999999999999994 344432 22 1223333333 333 22221
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHH-HHhcCCeEEEee
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLL-CANTNKITITAA 506 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~-~~~~~kp~I~aa 506 (570)
....+.++.+|+||+|+...........+ ....++.+|+.+
T Consensus 53 -----------------------~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 53 -----------------------DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp -----------------------EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred -----------------------CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 12345667999999999988887777777 456788888864
No 71
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.83 E-value=0.01 Score=56.49 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=60.7
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|++++|+|||.|.+|...++.|...| .++++|+++.. +++ .++ +.+..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~g-a~V~VIsp~~~-------------~~l---------------~~l-~~i~~- 58 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTG-AFVTVVSPEIC-------------KEM---------------KEL-PYITW- 58 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCccC-------------HHH---------------Hhc-cCcEE-
Confidence 578999999999999999999999999 58888865421 111 111 11221
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN 499 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~ 499 (570)
....+ . +..+.++|+||.+||+.+.-..+...|+.++
T Consensus 59 -~~~~~-----------------~----~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 59 -KQKTF-----------------S----NDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred -Eeccc-----------------C----hhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 11100 1 2235789999999999999989999998753
No 72
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.014 Score=58.57 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=65.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.+++|+|+|-+|..+|+.|...| ..+++||.|.= .+.+.+.+.. ...++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~-------------------------~~~~~~~~~~---~~~~v~g 51 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEE-------------------------RVEEFLADEL---DTHVVIG 51 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcCHH-------------------------HHHHHhhhhc---ceEEEEe
Confidence 47999999999999999999999 66777776321 1122233222 2333332
Q ss_pred ccCCCCCCCCCccccccccchHHHHHh-hccCCEEEEecCChHhhHHHHHHHHh-cCCeEEEe
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITA 505 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~l~~~~~~~-~~kp~I~a 505 (570)
+ ..+.+.|.+. +.++|+++.+|++-+.-..+..++.+ +|.|-+-+
T Consensus 52 d----------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 52 D----------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred c----------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 1 1245667666 89999999999997776666666655 88887654
No 73
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.65 E-value=0.0038 Score=58.95 Aligned_cols=98 Identities=21% Similarity=0.400 Sum_probs=64.9
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHh------hCCCcEE
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER------IFPAVAA 439 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~------inP~v~v 439 (570)
||.|+|+|..|+.+|..|+..| .++++...+. ...+.|++ ..|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~--------------------------~~~~~i~~~~~n~~~~~~~~l 53 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE--------------------------EQIEEINETRQNPKYLPGIKL 53 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH--------------------------HHHHHHHHHTSETTTSTTSBE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH--------------------------HHHHHHHHhCCCCCCCCCccc
Confidence 7999999999999999999999 7788755532 11122222 1233222
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHH--hcCCeEEEeeeCC
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGF 509 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~--~~~kp~I~aalG~ 509 (570)
.. . ... ..++++.++++|+|+.++-+..-|..+..+.. ..+.++|.+.-|+
T Consensus 54 ~~-~-----------------i~~-t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 54 PE-N-----------------IKA-TTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp ET-T-----------------EEE-ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred Cc-c-----------------ccc-ccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 11 0 111 24567788999999999999999999999887 5677888887777
No 74
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.62 E-value=0.0064 Score=66.53 Aligned_cols=36 Identities=42% Similarity=0.640 Sum_probs=33.2
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+++|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999766
No 75
>PLN00203 glutamyl-tRNA reductase
Probab=96.61 E-value=0.007 Score=68.01 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=57.2
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
+.+++|+|||+|..|..++++|...|+.+|++++.. ..|++.+++.+ +++.+..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------------------~era~~La~~~----~g~~i~~ 317 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------------------EERVAALREEF----PDVEIIY 317 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------------------HHHHHHHHHHh----CCCceEe
Confidence 668999999999999999999999999999996552 22454444443 3333322
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHh
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~ 487 (570)
. ..+.+.+.+.++|+||.||.+...
T Consensus 318 ~---------------------~~~dl~~al~~aDVVIsAT~s~~p 342 (519)
T PLN00203 318 K---------------------PLDEMLACAAEADVVFTSTSSETP 342 (519)
T ss_pred e---------------------cHhhHHHHHhcCCEEEEccCCCCC
Confidence 1 234556778899999999977553
No 76
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.58 E-value=0.014 Score=56.78 Aligned_cols=84 Identities=24% Similarity=0.292 Sum_probs=59.1
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
.+++++|+|+|+ |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.+ .+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~----------------------~~~~~~l~~~l~~~~-~~~~ 80 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD----------------------LERAQKAADSLRARF-GEGV 80 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC----------------------HHHHHHHHHHHHhhc-CCcE
Confidence 467899999996 999999999999998 588887542 235666666665432 2333
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
..... .+.+.+.+.++++|+||.+|....
T Consensus 81 ~~~~~------------------~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 81 GAVET------------------SDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred EEeeC------------------CCHHHHHHHHhcCCEEEECCCCCc
Confidence 32221 234666778899999999887644
No 77
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.57 E-value=0.0079 Score=55.72 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=31.4
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|+|+|++|..+++.|+..|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 45789999999999999999999998778998775
No 78
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.45 E-value=0.014 Score=64.07 Aligned_cols=35 Identities=49% Similarity=0.723 Sum_probs=32.5
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+.+.+|+|+|+|.+|..+++.|...|+.+|+++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999765
No 79
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.014 Score=65.30 Aligned_cols=87 Identities=18% Similarity=0.394 Sum_probs=73.8
Q ss_pred HhhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCc
Q 008323 359 LDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV 437 (570)
Q Consensus 359 ~~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v 437 (570)
..-+.+++|||-|+ |++|++++++++..+.++|.++|+ +..|-..+...|++.+|..
T Consensus 245 ~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~----------------------~E~~~~~i~~el~~~~~~~ 302 (588)
T COG1086 245 GAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR----------------------DEYKLYLIDMELREKFPEL 302 (588)
T ss_pred HhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC----------------------chHHHHHHHHHHHhhCCCc
Confidence 47899999999985 679999999999999999999877 4557777889999999988
Q ss_pred EEEEEeeccCCCCCCCCCccccccccchHHHHHhhcc--CCEEEEecC
Q 008323 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILS--HDVIFLLTD 483 (570)
Q Consensus 438 ~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~--~DvV~~~tD 483 (570)
++..+-.++ .+.+.+...+.+ .|+||-+..
T Consensus 303 ~~~~~igdV----------------rD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 303 KLRFYIGDV----------------RDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred ceEEEeccc----------------ccHHHHHHHHhcCCCceEEEhhh
Confidence 888887665 467888888888 899997654
No 80
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.36 E-value=0.017 Score=69.50 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccC-C------------eEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHH
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-R------------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV-~------------~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~ 428 (570)
-+.+||+|||||.+|..+|+.|++.+- . .+++.|. ...+++.+++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~----------------------~~~~a~~la~ 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL----------------------YLKDAKETVE 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC----------------------CHHHHHHHHH
Confidence 357799999999999999999998532 1 2444333 2223433333
Q ss_pred HHHhhCCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
. .|+++ +...++ .+.+.+..+++++|+|+.|+-.. .-..+...|.++|+.+++.
T Consensus 625 ~----~~~~~--~v~lDv----------------~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 625 G----IENAE--AVQLDV----------------SDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred h----cCCCc--eEEeec----------------CCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEEC
Confidence 3 34433 233222 24577788888999999999873 2345666677777766654
No 81
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.27 E-value=0.032 Score=56.21 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=68.6
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.+++++|||||.|.+|..=++.|+..| .+||+|-++.- .++ ..++ + .+.++
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~-------------~el--------~~l~----~-~~~i~-- 72 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFS-------------KEF--------LDLK----K-YGNLK-- 72 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCC-------------HHH--------HHHH----h-CCCEE--
Confidence 567889999999999999999999999 78999766421 111 1111 1 22233
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
.+...+ . .+.+..+++||.|||+.+.-..+...|+..++++.++
T Consensus 73 ~~~r~~-----------------~----~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 73 LIKGNY-----------------D----KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EEeCCC-----------------C----hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 222111 1 2235789999999999999999999999999988876
No 82
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.26 E-value=0.017 Score=60.49 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=29.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCC-eEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~-~ItlVD~ 396 (570)
+||.|+|+|++|+.+|..|+..|+. +|+++|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4899999999999999999999985 8999987
No 83
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.25 E-value=0.017 Score=61.10 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=58.7
Q ss_pred ccCeEEEEcCchHHHHHHHHHH-HccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La-~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
..++++|||+|+.|...++.|. ..|+++|++++. ...|++..++.+++..+ +++..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~ 184 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTA 184 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEE
Confidence 3578999999999999999997 478999999654 34578888888875432 33322
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
. +++++.+.++|+|+.||-+.+
T Consensus 185 ~-----------------------~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 185 A-----------------------TDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred e-----------------------CCHHHHhccCCEEEEecCCCC
Confidence 1 345666789999999998744
No 84
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.22 E-value=0.016 Score=55.74 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=30.9
Q ss_pred hhccCeEEEEcCch-HHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGg-LG~~VA~~La~~GV~~ItlVD~ 396 (570)
.|.+++|+|+|+|. +|..+|++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 57899999999997 59999999999998 6888764
No 85
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.16 E-value=0.0021 Score=63.13 Aligned_cols=53 Identities=25% Similarity=0.265 Sum_probs=48.3
Q ss_pred chHhhhccCeEEEEcCchHHHH-HHHHHHHccCCeE------EEE---eCCcccccCCCcccC
Q 008323 357 LNLDILSSRKCLLLGAGTLGCQ-VARMLMAWGVRKI------TLL---DNGRVAMSNPLRQSL 409 (570)
Q Consensus 357 l~~~~L~~~kVlIlGaGgLG~~-VA~~La~~GV~~I------tlV---D~d~Vs~sNl~RQ~L 409 (570)
.-++++++++|.|+|.|+.|+. ++..|..+|++.+ ++| |++..+.+|++||.+
T Consensus 98 ~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 98 AALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 3468999999999999999999 9999999999998 999 999998889988865
No 86
>PLN02928 oxidoreductase family protein
Probab=96.08 E-value=0.017 Score=61.88 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=32.5
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|+|||.|.+|..+|+.|...|. +++.+|+
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 46899999999999999999999999997 7777776
No 87
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.08 E-value=0.038 Score=58.27 Aligned_cols=93 Identities=23% Similarity=0.306 Sum_probs=62.0
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
..+.+++|.|||.|.+|..+|+.|...|+ ++..+|... . .. +.+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~------~~-------------------~~~~- 176 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K------SW-------------------PGVQ- 176 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C------CC-------------------CCce-
Confidence 46789999999999999999999999997 555665411 0 00 0111
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec-CChHhhHHHHHHHH---hcCCeEEEeeeC
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCA---NTNKITITAALG 508 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~l~~~~~~---~~~kp~I~aalG 508 (570)
.. .....++++++++|+|+++. .+.+++.+++.-.- +.+..+||++.|
T Consensus 177 -~~--------------------~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 228 (312)
T PRK15469 177 -SF--------------------AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARG 228 (312)
T ss_pred -ee--------------------cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCc
Confidence 00 01245678889999999876 56777888774222 234567787544
No 88
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.05 E-value=0.024 Score=60.44 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.0
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHH-ccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMA-WGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~-~GV~~ItlVD~ 396 (570)
.|++++|+|+|+ |.+|+.+++.|+. .|++++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 578899999998 8999999999985 58999999765
No 89
>PRK09242 tropinone reductase; Provisional
Probab=96.05 E-value=0.04 Score=55.07 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=58.6
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
+++++++|.|+ |++|..+++.|+..|. ++++++.+ ..+.+.+++.++..+|+.++.
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~~ 63 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD----------------------ADALAQARDELAEEFPEREVH 63 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCCeEE
Confidence 56889999985 8999999999999996 57776642 223455666777767777777
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (570)
.+..++ . ..++...-.+.+.+.+...|+||.+..
T Consensus 64 ~~~~Dl-------~--~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 64 GLAADV-------S--DDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred EEECCC-------C--CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 776655 1 011111112223333456799888775
No 90
>PRK05854 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.034 Score=58.09 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=45.9
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~ 438 (570)
..+++++++|.| .||+|.++|+.|++.|. ++++++.+ ..|++.+.+.|.+..|+.+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~----------------------~~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN----------------------RAKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC----------------------HHHHHHHHHHHHHhCCCCc
Confidence 456788999998 68999999999999995 67775542 2355556666666666666
Q ss_pred EEEEeecc
Q 008323 439 AEGVVMAI 446 (570)
Q Consensus 439 v~~~~~~I 446 (570)
+..+..++
T Consensus 67 v~~~~~Dl 74 (313)
T PRK05854 67 LSLRALDL 74 (313)
T ss_pred eEEEEecC
Confidence 66665554
No 91
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.95 E-value=0.0093 Score=60.01 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=35.6
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCC--eEEEEeCCc
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~--~ItlVD~d~ 398 (570)
.+++.||+|+|+|+.|+.||+.|+..|++ +|+++|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999973
No 92
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.94 E-value=0.073 Score=53.30 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=58.7
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccC---CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV---~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
+..||.|||+|..|..+++.|+..|. ..++++++. ...|++.+++. + ++.+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~---------------------~~~~~~~~~~~----~-~~~~ 56 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS---------------------NVEKLDQLQAR----Y-NVST 56 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC---------------------CHHHHHHHHHH----c-CcEE
Confidence 45789999999999999999998873 223333220 11133332222 2 1221
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHh-cCCeEEEeeeCC
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITAALGF 509 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~-~~kp~I~aalG~ 509 (570)
. .+..+.++++|+||+|+-....+..+..+... .++.+|+++-|.
T Consensus 57 --~-----------------------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 57 --T-----------------------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --e-----------------------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECCCC
Confidence 1 12234557899999999987777766666532 356777764443
No 93
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.94 E-value=0.062 Score=48.88 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=63.2
Q ss_pred eEEEEcC-chHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 008323 366 KCLLLGA-GTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (570)
Q Consensus 366 kVlIlGa-GgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~ 443 (570)
||+|+|+ |-.|..+++.+.. -|+.=.-.+|...= . +...|+ | +.+..-..++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--------~-~~g~d~---g--------~~~~~~~~~~~----- 56 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--------A-KVGKDV---G--------ELAGIGPLGVP----- 56 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--------T-TTTSBC---H--------HHCTSST-SSB-----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--------c-cccchh---h--------hhhCcCCcccc-----
Confidence 7999999 9999999999999 66665666666430 0 112333 2 00000000111
Q ss_pred eccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEeeeCCc
Q 008323 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFD 510 (570)
Q Consensus 444 ~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~aalG~~ 510 (570)
-.++++++++.+||||+.| +.++-...-+.|.++++|+|.++-|+.
T Consensus 57 --------------------v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 57 --------------------VTDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp --------------------EBS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred --------------------cchhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 1256677888899999999 777777788888899999999987774
No 94
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.034 Score=57.49 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=29.9
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++++|+|.| .|++|.++|+.|+..|. ++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999998 59999999999999996 6777554
No 95
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.92 E-value=0.031 Score=58.92 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=56.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
..++|+|||+|..|...++.+.. .++.+|++++. ...|++..++.+++.. ..+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g--~~~~~ 179 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQG--FDAEV 179 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CceEE
Confidence 47899999999999999997776 68899999654 3457888888877642 22222
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCCh
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (570)
. +..++.+.++|+|++||.+.
T Consensus 180 ~-----------------------~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 180 V-----------------------TDLEAAVRQADIISCATLST 200 (314)
T ss_pred e-----------------------CCHHHHHhcCCEEEEeeCCC
Confidence 1 23345668999999999875
No 96
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.87 E-value=0.04 Score=58.30 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=65.2
Q ss_pred ccCeEEEEcCchHHHHHHHHHH-HccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La-~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
..++++|+|+|+.|...++.++ ..|+++|+++|. ...|++..++.+++.++ +++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~ 182 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV 182 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence 4678999999999999998876 569999999765 23477778887765432 33322
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEE
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~ 504 (570)
+ ++.++.+.++|+|+.||-+.+. ++. -+.+.|+-++.
T Consensus 183 ~-----------------------~~~~~~~~~aDiVi~aT~s~~p--~i~-~~l~~G~hV~~ 219 (325)
T PRK08618 183 V-----------------------NSADEAIEEADIIVTVTNAKTP--VFS-EKLKKGVHINA 219 (325)
T ss_pred e-----------------------CCHHHHHhcCCEEEEccCCCCc--chH-HhcCCCcEEEe
Confidence 2 2345666899999999988753 334 44466665543
No 97
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=95.87 E-value=0.024 Score=57.02 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=64.5
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
+.+++++++| |||+|-.+++.|+.-|+..+.+.|+ .+. ..+..+|++++|.+++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En---------~~a~akL~ai~p~~~v~ 58 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EEN---------PEAIAKLQAINPSVSVI 58 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhC---------HHHHHHHhccCCCceEE
Confidence 4678888885 9999999999999999999988654 111 24567899999999999
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~ 481 (570)
-++.++.+ .++.+...++.-.-+...||+|+.
T Consensus 59 F~~~DVt~---------~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 59 FIKCDVTN---------RGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred EEEecccc---------HHHHHHHHHHHHHHhCceEEEEcc
Confidence 99988722 222333445555556778999874
No 98
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.82 E-value=0.074 Score=57.39 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=32.3
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+...+|+|+|+|.+|..+++.|.+.|+ +++++|.+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4678899999999999999999999998 69998873
No 99
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.79 E-value=0.05 Score=56.62 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=27.5
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999985 57887763
No 100
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.75 E-value=0.07 Score=54.29 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=55.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHccC--CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV--~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
.+|.|||+|.+|..+++.|...|. ..++++|++ ..+++.+++.+ ++.+ .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~----------------------~~~~~~~~~~~-----g~~~--~ 53 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS----------------------PEKRAALAEEY-----GVRA--A 53 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCC----------------------HHHHHHHHHhc-----CCee--c
Confidence 479999999999999999999884 355565431 11222222221 1111 0
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
....+.+.++|+||.|+-....+..+..+....++.+|+.
T Consensus 54 -----------------------~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 54 -----------------------TDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred -----------------------CChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 1122345788999999977666666666554445667765
No 101
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.74 E-value=0.061 Score=53.99 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=57.5
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
++++.++|.|+ |++|.++|+.|+..|. ++.+++.+ ..+.+.+++.+.+.+|..++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~ 62 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRD----------------------EERLASAEARLREKFPGARLL 62 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC----------------------HHHHHHHHHHHHhhCCCceEE
Confidence 56789999985 7899999999999997 47776652 124445566677777777777
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (570)
.+..++ + +.++...-.+.+.+.+...|+||.+..
T Consensus 63 ~~~~D~-------~--~~~~v~~~~~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 63 AARCDV-------L--DEADVAAFAAAVEARFGGVDMLVNNAG 96 (265)
T ss_pred EEEecC-------C--CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 776655 1 111111112223333456788888764
No 102
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.73 E-value=0.033 Score=58.44 Aligned_cols=77 Identities=18% Similarity=0.127 Sum_probs=57.8
Q ss_pred hccCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
...++++|+|+|..|...++.+.. .|+.+|.+.|. ...|+++.++.+++.. +.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~--~~~~ 178 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALG--PTAE 178 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CeeE
Confidence 356899999999999999999975 68889999665 3457888888887542 2222
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
. +..++.+.++|+|+.||-+.+
T Consensus 179 -~-----------------------~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 179 -P-----------------------LDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred -E-----------------------CCHHHHhhcCCEEEEccCCCC
Confidence 1 233456689999999998865
No 103
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.72 E-value=0.043 Score=58.20 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=57.7
Q ss_pred ccCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
..++++|+|+|+.|...+..|.. .|+.++++++. ...|++..++.+++.. ++.+..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~-g~~v~~ 187 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAEL-GIPVTV 187 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhcc-CceEEE
Confidence 35789999999999999999986 67899999654 3447888888876543 233322
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
. +.+++.+.++|+|+.+|-+.+
T Consensus 188 ~-----------------------~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 188 A-----------------------RDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred e-----------------------CCHHHHHccCCEEEEeeCCCC
Confidence 1 334566788999999998754
No 104
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.72 E-value=0.048 Score=59.90 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=32.5
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+.+++|+|+|+|.+|..+|+.|...|+ +++++|.+
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~d 244 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVD 244 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3689999999999999999999999998 78888764
No 105
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.057 Score=54.02 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=44.6
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
++++++++|.| .|++|.++++.|+..|. ++.++|. ...+.+.+++.+.+.++..++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r----------------------~~~~~~~~~~~~~~~~~~~~~ 60 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL----------------------DAALAERAAAAIARDVAGARV 60 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhccCCceE
Confidence 46788999998 57999999999999996 5777664 123445556666654455566
Q ss_pred EEEeecc
Q 008323 440 EGVVMAI 446 (570)
Q Consensus 440 ~~~~~~I 446 (570)
..+..++
T Consensus 61 ~~~~~Dl 67 (260)
T PRK07063 61 LAVPADV 67 (260)
T ss_pred EEEEccC
Confidence 6665554
No 106
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.67 E-value=0.026 Score=58.97 Aligned_cols=80 Identities=28% Similarity=0.500 Sum_probs=50.3
Q ss_pred EEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCC--cEEE--E
Q 008323 367 CLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA--VAAE--G 441 (570)
Q Consensus 367 VlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~--v~v~--~ 441 (570)
|||.| +|++|+++++.|++.|..+|.++|.+-- +--.+.+.+++.+|+ ++.. .
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~----------------------~l~~l~~~l~~~~~~~~v~~~~~~ 58 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN----------------------KLYELERELRSRFPDPKVRFEIVP 58 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH----------------------HHHHHHHHCHHHC--TTCEEEEE-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh----------------------HHHHHHHHHhhcccccCcccccCc
Confidence 67776 8899999999999999999999998543 444555556555544 4322 2
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhc--cCCEEEEecCC
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDT 484 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs 484 (570)
+..+| .+.+.+...++ ..|+||-+..-
T Consensus 59 vigDv----------------rd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 59 VIGDV----------------RDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp -CTSC----------------CHHHHHHHHTT--T-SEEEE----
T ss_pred eeecc----------------cCHHHHHHHHhhcCCCEEEEChhc
Confidence 22222 35677788888 78999987654
No 107
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.55 E-value=0.11 Score=51.75 Aligned_cols=99 Identities=19% Similarity=0.091 Sum_probs=61.1
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCC--CcEEEEE
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP--AVAAEGV 442 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP--~v~v~~~ 442 (570)
||.||| +|.+|+.+++.|+..| .+++++|.+ ..|++.+++....... ++.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~----------------------~~~~~~l~~~~~~~~~~~g~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD----------------------LEKAEEAAAKALEELGHGGSDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC----------------------HHHHHHHHHHHHhhccccCCCceEE
Confidence 699997 8999999999999999 677776541 2234444333222111 1110000
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHH-hcCCeEEEeeeCC
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA-NTNKITITAALGF 509 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~-~~~kp~I~aalG~ 509 (570)
. ....+.++++|+||+|+-....+..+..+.. ..++.+|+++-|.
T Consensus 59 ~----------------------~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi 104 (219)
T TIGR01915 59 G----------------------ADNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPL 104 (219)
T ss_pred E----------------------eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCc
Confidence 0 0113446789999999988777766666643 2357788875554
No 108
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.069 Score=53.59 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=29.6
Q ss_pred hhhccCeEEEEcC-c-hHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGA-G-TLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGa-G-gLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++++++|.|+ | |+|..+++.|+..|.. ++++|.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 4556789999997 6 7999999999999975 777654
No 109
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.54 E-value=0.1 Score=54.00 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=57.9
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccC---CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV---~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
+.||.+||+|.+|..+++.|...|. .+|++.|+ .+.+++.+++. . ++++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------------------~~~~~~~l~~~---~--g~~~- 53 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------------------NVSNLKNASDK---Y--GITI- 53 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------------------CHHHHHHHHHh---c--CcEE-
Confidence 4589999999999999999999884 34665443 12222222221 2 2221
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHh--cCCeEEEeeeC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN--TNKITITAALG 508 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~--~~kp~I~aalG 508 (570)
. ....+.++++|+||+|+-....+-.+..+... .++.+|+.+-|
T Consensus 54 -~-----------------------~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AG 99 (272)
T PRK12491 54 -T-----------------------TNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAG 99 (272)
T ss_pred -e-----------------------CCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCC
Confidence 1 11224457889999999876667666666532 34567776433
No 110
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.53 E-value=0.062 Score=53.01 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.1
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++++|+|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999995 89999999999999975 8887763
No 111
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.51 E-value=0.065 Score=56.61 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=30.7
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCC-eEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~-~ItlVD~ 396 (570)
+..||.|||+|.+|+.+|-.|+..|+. +|.|+|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 356999999999999999999999985 7999886
No 112
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.47 E-value=0.067 Score=58.57 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=62.3
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
+++++|+|+|+|++|..+|+.|+..|. +++++|.+.- + ..+...+.|.+. +++ .
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~-------------~--------~~~~~~~~l~~~--~~~--~ 56 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE-------------D--------QLKEALEELGEL--GIE--L 56 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch-------------H--------HHHHHHHHHHhc--CCE--E
Confidence 578999999999999999999999995 7999887431 0 111222334332 223 2
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEE
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~ 504 (570)
+..+. . .+....+|+||.++......- .-..|+.+|+|++.
T Consensus 57 ~~~~~------------------~---~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 57 VLGEY------------------P---EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred EeCCc------------------c---hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 22111 0 134568999999887644433 55667788898886
No 113
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.44 E-value=0.051 Score=56.69 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=31.9
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.|.+++|+|+|+|.+|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8888765
No 114
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.42 E-value=0.099 Score=53.83 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=27.7
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
||+|+|+|.+|+.+|..|+..| .+++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence 6999999999999999999998 57999886
No 115
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.1 Score=52.73 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=29.6
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 57789999996 8999999999999997 6777664
No 116
>PRK07680 late competence protein ComER; Validated
Probab=95.41 E-value=0.12 Score=53.03 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=26.1
Q ss_pred eEEEEcCchHHHHHHHHHHHccC---CeEEEEeC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV---~~ItlVD~ 396 (570)
+|.|||+|.+|+.+++.|...|. ..++++|+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 69999999999999999999984 45666544
No 117
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.36 E-value=0.098 Score=53.17 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.4
Q ss_pred eEEEEcCchHHHHHHHHHHHccC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV 388 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV 388 (570)
||.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999874
No 118
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.35 E-value=0.088 Score=55.09 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=29.2
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
..||.|||+|..|+.+|+.|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999994 78888865
No 119
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.34 E-value=0.047 Score=56.09 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=30.0
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++|+|+|++|..+++.|+..|. +++++|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R 148 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR 148 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999999999999999999996 8999875
No 120
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.33 E-value=0.078 Score=55.28 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=28.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++|.|||+|.+|+.+|..|+..|. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 579999999999999999999995 7888885
No 121
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.27 E-value=0.031 Score=52.11 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=53.2
Q ss_pred CeEEEEcC-chHHHHHHHHHHHccC-CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCc--EEE
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV--AAE 440 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~GV-~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v--~v~ 440 (570)
.||.|+|+ |.+|+.+|..|+..|+ .+|.|+|.+ ..|++.-+.-|...-+.. .+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~----------------------~~~~~g~a~Dl~~~~~~~~~~~~ 58 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN----------------------EDKAEGEALDLSHASAPLPSPVR 58 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS----------------------HHHHHHHHHHHHHHHHGSTEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC----------------------cccceeeehhhhhhhhhcccccc
Confidence 38999999 9999999999999998 459998872 236666666666654333 222
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (570)
... ...+-++++|+|+.+...
T Consensus 59 i~~-----------------------~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 59 ITS-----------------------GDYEALKDADIVVITAGV 79 (141)
T ss_dssp EEE-----------------------SSGGGGTTESEEEETTST
T ss_pred ccc-----------------------ccccccccccEEEEeccc
Confidence 221 123445899999988765
No 122
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.25 E-value=0.074 Score=56.57 Aligned_cols=95 Identities=22% Similarity=0.241 Sum_probs=62.2
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
..+.+++|.|+|+|.+|.++|+.|-..| ..|..-. |+. ..+ +.+.+...+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~----------r~~----------~~~--~~~~~~~~~------- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHS----------RTQ----------LPP--EEAYEYYAE------- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeec----------ccC----------Cch--hhHHHhccc-------
Confidence 7889999999999999999999999977 5555411 111 011 111111111
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEe-cCChHhhHHHHHHHHhcC---CeEEEeeeCC
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL-TDTRESRWLPTLLCANTN---KITITAALGF 509 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~-tDs~e~R~l~~~~~~~~~---kp~I~aalG~ 509 (570)
....++++.++|+|+.| -.+.+++.++|.-.-.+= ..+||.+.|-
T Consensus 208 -------------------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ 256 (336)
T KOG0069|consen 208 -------------------------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGA 256 (336)
T ss_pred -------------------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccc
Confidence 13445677899987775 478889999887665433 3566776553
No 123
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.24 E-value=0.13 Score=54.72 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.0
Q ss_pred chHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEe
Q 008323 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 357 l~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD 395 (570)
.+++.|++++|.|||.|.+|..+|++|...|+ ++++.|
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 35689999999999999999999999999998 455544
No 124
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.23 E-value=0.11 Score=48.16 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=60.4
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~ 443 (570)
+.|+|.| .||+|-++|+.|+..|-.++.+++.. + -..+++.+++.++.. +.++..+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~--~~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAP--GAKITFIE 58 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----ccccccccccccccc--cccccccc
Confidence 4688887 89999999999999998999997764 0 134566667777744 46777776
Q ss_pred eccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCCh
Q 008323 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (570)
Q Consensus 444 ~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (570)
.++ +..++.+.-.+.+.+.....|++|.+....
T Consensus 59 ~D~---------~~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 59 CDL---------SDPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp SET---------TSHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred ccc---------cccccccccccccccccccccccccccccc
Confidence 665 112222222333444446889999887643
No 125
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.22 E-value=0.097 Score=57.25 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=32.0
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+.+++|+|+|+|.+|..+|+.+..+|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 689999999999999999999999998 588887643
No 126
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.22 E-value=0.049 Score=57.85 Aligned_cols=94 Identities=30% Similarity=0.382 Sum_probs=64.0
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
..|.+++|.|||+|.+|+.||+.|..+|+.-+ .+|+ |...+. + ..
T Consensus 138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~-~~d~-------------~~~~~~-------~--------------~~ 182 (324)
T COG0111 138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI-GYDP-------------YSPRER-------A--------------GV 182 (324)
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCeEE-EECC-------------CCchhh-------h--------------cc
Confidence 47889999999999999999999999996544 4343 111110 0 01
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec-CChHhhHHHHHHHHhc---CCeEEEeeeC
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAALG 508 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~l~~~~~~~~---~kp~I~aalG 508 (570)
.+. ...+.++++++++|+|++.+ -+.++|.+++.-.-+. |..+||++.|
T Consensus 183 ~~~--------------------~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG 235 (324)
T COG0111 183 DGV--------------------VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARG 235 (324)
T ss_pred ccc--------------------eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCc
Confidence 111 12356789999999999876 4677888877655433 4468887655
No 127
>PRK04148 hypothetical protein; Provisional
Probab=95.18 E-value=0.16 Score=47.35 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=71.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
++.||+.||+| .|..+|+.|+..| ..++-+|.+. ..++.+++. . ++.+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G-~~ViaIDi~~----------------------~aV~~a~~~------~--~~~v 63 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG-FDVIVIDINE----------------------KAVEKAKKL------G--LNAF 63 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC-CEEEEEECCH----------------------HHHHHHHHh------C--CeEE
Confidence 45789999999 9999999999999 4788877632 122222222 1 2333
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEeeeCCce
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDS 511 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~aalG~~g 511 (570)
..++ .+--.++.+++|+|..+--.+|-..-+-+++++.+.+++-..|+.+.
T Consensus 64 ~dDl------------------f~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 64 VDDL------------------FNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ECcC------------------CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3333 11223566899999999999999999999999999998877766654
No 128
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.18 E-value=0.068 Score=54.84 Aligned_cols=39 Identities=36% Similarity=0.645 Sum_probs=33.9
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHc----cC------CeEEEEeCCc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGR 398 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~----GV------~~ItlVD~d~ 398 (570)
.+|++.||+++|+|+.|..||+.|+.+ |+ ++|.++|..=
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 578999999999999999999999999 99 8999999863
No 129
>PRK07574 formate dehydrogenase; Provisional
Probab=95.18 E-value=0.087 Score=57.25 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=31.3
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|.|||.|.+|..||+.|...|+ ++..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 45899999999999999999999999997 5666564
No 130
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.17 E-value=0.059 Score=56.81 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=31.7
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|.|||.|.+|..||+.+...|. +|..+|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 47999999999999999999999999886 5666665
No 131
>PRK09186 flagellin modification protein A; Provisional
Probab=95.17 E-value=0.13 Score=51.18 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=27.3
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEe
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD 395 (570)
+++++|+|.|+ |++|.++|+.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999985 8999999999999996 466654
No 132
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.14 E-value=0.056 Score=57.47 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.0
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|.|||.|.+|..+|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46899999999999999999999999997 5777665
No 133
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.13 E-value=0.13 Score=50.86 Aligned_cols=60 Identities=22% Similarity=0.324 Sum_probs=43.8
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
+++++|.| .|++|..+|+.|+..| .++++++.+. .+.+.+.+.+.+.+|..++..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g-~~v~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG-RDLALCARRT----------------------DRLEELKAELLARYPGIKVAVA 58 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC-CEEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 46789997 8999999999999999 4788876521 1334455566666777777777
Q ss_pred eecc
Q 008323 443 VMAI 446 (570)
Q Consensus 443 ~~~I 446 (570)
..++
T Consensus 59 ~~D~ 62 (248)
T PRK08251 59 ALDV 62 (248)
T ss_pred EcCC
Confidence 7665
No 134
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.11 E-value=0.14 Score=53.78 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=46.4
Q ss_pred ccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
.++.++|.| .||+|.++|+.|+..|. ++.+++.+ ..|.+.+++.+++.++..++..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~----------------------~~~l~~~~~~l~~~~~~~~~~~ 108 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN----------------------PDKLKDVSDSIQSKYSKTQIKT 108 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC----------------------HHHHHHHHHHHHHHCCCcEEEE
Confidence 478899998 57999999999999997 68887652 2355666777877777777777
Q ss_pred Eeecc
Q 008323 442 VVMAI 446 (570)
Q Consensus 442 ~~~~I 446 (570)
+..++
T Consensus 109 ~~~Dl 113 (320)
T PLN02780 109 VVVDF 113 (320)
T ss_pred EEEEC
Confidence 76665
No 135
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.11 E-value=0.12 Score=51.61 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=30.1
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.| .|++|.++|+.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46789999998 59999999999999996 5777665
No 136
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.10 E-value=0.045 Score=54.61 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=64.6
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|++++|+|+|.|.+|..=++.|+..| .+++++-... ..++ ... .+..+ +.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-------------~~el-----------~~~-~~~~~---i~ 59 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-------------EPEL-----------KAL-IEEGK---IK 59 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-------------cHHH-----------HHH-HHhcC---cc
Confidence 567899999999999999999999999 7777755432 0111 111 11111 11
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
.+.. +...+.+..+++||.+||+.+.-..+...|..+++|+-.+
T Consensus 60 ~~~~---------------------~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 60 WIER---------------------EFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred hhhc---------------------ccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 1110 1112233459999999999999999999999999976544
No 137
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.06 E-value=0.097 Score=49.60 Aligned_cols=117 Identities=18% Similarity=0.128 Sum_probs=58.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.||.+||+|..|+.+|++|+..|. .+++.|.+.-...-+.. .|-..++..++.+++- ++-+..+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~-----------~g~~~~~s~~e~~~~~--dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAE-----------AGAEVADSPAEAAEQA--DVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHH-----------TTEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHH-----------hhhhhhhhhhhHhhcc--cceEeeccc
Confidence 489999999999999999999995 57777754311111110 1222222233333332 333333221
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec-CChHhhHHHHHHHHhcCCeEEEee
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANTNKITITAA 506 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~l~~~~~~~~~kp~I~aa 506 (570)
. ...++.-...+ +...+..-.+|++++ -+.+.-..+...+...|..+|++.
T Consensus 68 ~----------~~v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 68 D----------DAVEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp H----------HHHHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred c----------hhhhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 0 00000000001 222334456777654 456666677778888888898874
No 138
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.04 E-value=0.081 Score=56.45 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=33.1
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+++|||||+|-.|..+|++|...|+++|++...
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478999999999999999999999999999999544
No 139
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.99 E-value=0.15 Score=53.62 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=27.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.||.|||+|..|+.+|..|++.|. +++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 379999999999999999999984 5777665
No 140
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.97 E-value=0.081 Score=48.83 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=25.2
Q ss_pred EEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 367 VlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
|+|+|+|++|+.+|-.|...| .++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g-~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG-HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC-CceEEEEc
Confidence 789999999999999999977 55887655
No 141
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.96 E-value=0.21 Score=50.70 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=24.3
Q ss_pred eEEEEcCchHHHHHHHHHHHccC---CeEEEE
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLL 394 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV---~~ItlV 394 (570)
||.+||+|.+|..+++.|...|. ..|+++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 245553
No 142
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.93 E-value=0.11 Score=54.82 Aligned_cols=31 Identities=35% Similarity=0.645 Sum_probs=28.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 78999999999999999999998 67999885
No 143
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.92 E-value=0.14 Score=56.09 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=31.9
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+.+.+|+|+|+|.+|..+|+.+...|. +++++|.+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3678999999999999999999999998 68887763
No 144
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.90 E-value=0.26 Score=50.80 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGV 388 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV 388 (570)
+..||.+||+|..|..+++.|+..|+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCC
Confidence 34589999999999999999999983
No 145
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.90 E-value=0.19 Score=52.35 Aligned_cols=40 Identities=35% Similarity=0.616 Sum_probs=36.4
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHc----cC------CeEEEEeCCcc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRV 399 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~----GV------~~ItlVD~d~V 399 (570)
.+|++.||+++|+|+.|+.||+.|+.+ |+ ++|.++|..=+
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 678899999999999999999999999 99 79999998643
No 146
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.86 E-value=0.14 Score=55.25 Aligned_cols=114 Identities=11% Similarity=0.208 Sum_probs=69.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccC------CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV------~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~ 436 (570)
...||.|||+|+=|+++|..|+..|. .++++...+. ++ . ++ ..++.+++-.-+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~-~-~~----~~~~~in~~~~N 68 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IV-E-GE----KLSDIINTKHEN 68 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cc-c-ch----HHHHHHHhcCCC
Confidence 34689999999999999999999874 3566653321 11 0 22 123333321111
Q ss_pred cEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHH----hcCCeEEEeeeCCc
Q 008323 437 VAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA----NTNKITITAALGFD 510 (570)
Q Consensus 437 v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~----~~~kp~I~aalG~~ 510 (570)
.+ ..||..+.+ .... ..++.+.++++|+||.++-+...|..+..+.. ..+.++|+++-|+.
T Consensus 69 ~~--------ylp~~~Lp~----ni~~-tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 69 VK--------YLPGIKLPD----NIVA-VSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred cc--------cCCCCcCCC----ceEE-ecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 11 122332221 1111 23455678999999999999999998888864 22447888766654
No 147
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.83 E-value=0.21 Score=53.16 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=61.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.||+|+|+|..|+.+|..|+..| +++++..+.- + .+.+++....... ...
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~----------------------~----~~~i~~~~~~~~~--l~~ 57 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAE----------------------T----ADDINDNHRNSRY--LGN 57 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHH----------------------H----HHHHHhcCCCccc--CCC
Confidence 57999999999999999999988 4555432110 1 1222221111000 000
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc--CCeEEEeeeCCc
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--NKITITAALGFD 510 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~--~kp~I~aalG~~ 510 (570)
.+..|.. ... ..++.+.++.+|+||+++-+...+..+..+.... +.++|...-|+.
T Consensus 58 ~~~l~~~---------i~~-t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 58 DVVLSDT---------LRA-TTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CcccCCC---------eEE-ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 0000000 001 1233455689999999999999998888887543 346777754554
No 148
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.82 E-value=0.077 Score=56.08 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=31.0
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|.|+|.|.+|.+||+.|...|. ++..+|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 46899999999999999999999999997 4555554
No 149
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.82 E-value=0.15 Score=50.19 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|+|+ |++|..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56889999997 9999999999999996 5788774
No 150
>PRK06194 hypothetical protein; Provisional
Probab=94.81 E-value=0.18 Score=51.28 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=29.0
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++||.| +|++|.++|+.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4568899998 58999999999999996 6788765
No 151
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.77 E-value=0.35 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=28.1
Q ss_pred hhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+...++.|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R 112 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR 112 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 4445678999985 9999999999999995 5655443
No 152
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.74 E-value=0.28 Score=50.69 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.2
Q ss_pred eEEEEcCchHHHHHHHHHHHccC---CeEEEEeC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV---~~ItlVD~ 396 (570)
+|.|||+|.+|..+++.|...|. .++.++|+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 69999999999999999999883 46666654
No 153
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.18 Score=52.05 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.2
Q ss_pred hhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 5567889999985 9999999999999995 6777654
No 154
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.70 E-value=0.058 Score=45.71 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.7
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+..++++|+|+|+.|..+++.|...|..+++++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 477899999999999999999999998899999988
No 155
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.68 E-value=0.31 Score=42.87 Aligned_cols=86 Identities=24% Similarity=0.322 Sum_probs=57.3
Q ss_pred EEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 008323 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAI 446 (570)
Q Consensus 367 VlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~I 446 (570)
|+|+|+|.+|-.+++.|.. +-..++++|.|.- ++ +.+.+.. +. .+..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~----------------------~~----~~~~~~~--~~--~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE----------------------RV----EELREEG--VE--VIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH----------------------HH----HHHHHTT--SE--EEES-T
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH----------------------HH----HHHHhcc--cc--cccccc
Confidence 6899999999999999999 5478999988531 22 2223222 22 332221
Q ss_pred CCCCCCCCCccccccccchHHHHH-hhccCCEEEEecCChHhhHHHHHHHHhcC
Q 008323 447 PMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTN 499 (570)
Q Consensus 447 pm~g~~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~e~R~l~~~~~~~~~ 499 (570)
.+.+.+.+ -+++++.|+.++++.+.-..+...++..+
T Consensus 50 ----------------~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~ 87 (116)
T PF02254_consen 50 ----------------TDPEVLERAGIEKADAVVILTDDDEENLLIALLARELN 87 (116)
T ss_dssp ----------------TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHT
T ss_pred ----------------hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHC
Confidence 22344433 46899999999999888888888887633
No 156
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.63 E-value=0.13 Score=57.27 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=32.8
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
..|.+++|+|+|+|.+|..+|+.|...|. +++++|.+
T Consensus 250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d 286 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID 286 (476)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36899999999999999999999999998 58887654
No 157
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.63 E-value=0.27 Score=51.72 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.7
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
||.|||+|.+|+.+|..|+..| .++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence 6999999999999999999998 56778765
No 158
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.63 E-value=0.2 Score=52.59 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=29.7
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHcc-CCeEEEEeCC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWG-VRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~G-V~~ItlVD~d 397 (570)
+++++|||.| +|++|..+++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 4578899998 5899999999999987 4578887753
No 159
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.59 E-value=0.2 Score=50.65 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.2
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
|+++.++|.|+ ||+|.++|+.|+..|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 57788999985 7999999999999996 6888765
No 160
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.59 E-value=0.15 Score=52.60 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=26.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
||+|+|+|++|+.+|..|+..| ..+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g-~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG-RDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC-CceEEEec
Confidence 7999999999999999999998 46788664
No 161
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.58 E-value=0.24 Score=49.30 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.4
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 356789999996 9999999999999997 5777665
No 162
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.23 Score=51.43 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999995 69999864
No 163
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.53 E-value=0.14 Score=54.74 Aligned_cols=111 Identities=14% Similarity=0.277 Sum_probs=67.7
Q ss_pred eEEEEcCchHHHHHHHHHHHccC-------CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV-------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV-------~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~ 438 (570)
||.|||+|.-|+.+|..|+..|. .++++...+. ++ . +. ...+.+.+...+.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~-~-~~----~~~~~in~~~~n~~ 59 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EI-E-GR----NLTEIINTTHENVK 59 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------cc-C-CH----HHHHHHHhcCCCcc
Confidence 68999999999999999999873 4566654321 11 0 11 12333333221111
Q ss_pred EEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHh--cCCeEEEeeeCCc
Q 008323 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN--TNKITITAALGFD 510 (570)
Q Consensus 439 v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~--~~kp~I~aalG~~ 510 (570)
. .||-.+.+ .... ..++++.++++|+||.++-+...|..+..+... .++++|+++-|++
T Consensus 60 y--------lpgi~Lp~----~i~a-t~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 60 Y--------LPGIKLPA----NLVA-VPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred c--------cCCCcCCC----CeEE-ECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 1 11211110 0111 235667889999999999999999888887643 4568898876664
No 164
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.52 E-value=0.16 Score=56.38 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=66.6
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|++++|+|||.|.+|..=++.|+..| .+||+|-++. . .++ .. +.+ .. +++
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~g-a~v~visp~~------------~-~~~--------~~----l~~-~~--~i~ 59 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAG-ARLTVNALAF------------I-PQF--------TA----WAD-AG--MLT 59 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCC------------C-HHH--------HH----HHh-CC--CEE
Confidence 578999999999999999999999999 5788864431 1 111 11 111 11 233
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
-+..++ ..+.++++++||.|||+.+.-..+...|+..++++-.+
T Consensus 60 ~~~~~~---------------------~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 60 LVEGPF---------------------DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EEeCCC---------------------ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 332111 12445889999999999999889999999999876544
No 165
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.52 E-value=0.22 Score=48.97 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.0
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++++|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999998 79999999999999996 67776653
No 166
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.46 E-value=0.22 Score=49.50 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=29.0
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 9999999999999997 5777654
No 167
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.46 E-value=0.094 Score=55.35 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=30.4
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEe
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD 395 (570)
..|++++|.|||.|.+|.+||+.|...|++ +..+|
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~ 177 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAE 177 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEEC
Confidence 478999999999999999999999999974 55544
No 168
>PLN03139 formate dehydrogenase; Provisional
Probab=94.46 E-value=0.14 Score=55.68 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|.|||+|.+|..+|+.|...|++ +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 468999999999999999999999999975 555664
No 169
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.41 E-value=0.096 Score=48.24 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=50.9
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
-...||.|||+|-+|..+++.|...|. +|.-| | .+. .+.++++.+..+...+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~--------srs--~~sa~~a~~~~~~~~~~- 60 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------Y--------SRS--PASAERAAAFIGAGAIL- 60 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------S--------SCH--H-HHHHHHC--TT-----
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------E--------eCC--ccccccccccccccccc-
Confidence 356799999999999999999999994 33321 1 121 23344444444443322
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHh----cCCeEEEe
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN----TNKITITA 505 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~----~~kp~I~a 505 (570)
++.+.++.+|+||+++-...-......++.. .++.++++
T Consensus 61 -------------------------~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHt 103 (127)
T PF10727_consen 61 -------------------------DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHT 103 (127)
T ss_dssp --------------------------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES
T ss_pred -------------------------ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEEC
Confidence 2245668999999998655555566666644 45666654
No 170
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.41 E-value=0.079 Score=43.96 Aligned_cols=32 Identities=25% Similarity=0.658 Sum_probs=28.8
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
||+|||+|-+|+++|..|...| .++|+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEeccc
Confidence 6999999999999999999999 6889988744
No 171
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.36 E-value=0.25 Score=49.98 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=30.3
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++++++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 357889999985 8999999999999997 68877653
No 172
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.34 E-value=0.15 Score=53.82 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=29.9
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
..||.|||+|.+|+.+|-.|+..|. ..|.|+|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4699999999999999999999998 46999886
No 173
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.33 E-value=0.27 Score=52.34 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=32.0
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~ 177 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDA 177 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46899999999999999999999999995 6777775
No 174
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.32 E-value=0.29 Score=48.84 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.3
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++|+|.|+ |++|.++|+.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467999985 7999999999999995 67887753
No 175
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.32 E-value=0.32 Score=51.46 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.2
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~Itl 393 (570)
|++++|.|||+|..|..+|++|...|+. +++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv 31 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIV 31 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEE
Confidence 5789999999999999999999999973 444
No 176
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.30 E-value=0.25 Score=51.78 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=28.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.||+|+|+|++|+.+|-.|.+.| ..+++++..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAG-LPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCC-CCeEEEEec
Confidence 47999999999999999999999 479998874
No 177
>PLN02427 UDP-apiose/xylose synthase
Probab=94.30 E-value=0.31 Score=52.21 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=32.7
Q ss_pred chHhhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 357 LNLDILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 357 l~~~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++-++++..||||.| +|-+|+.+++.|+..|--+++.+|.
T Consensus 7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 445778888999999 5999999999999985346777775
No 178
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.22 E-value=0.29 Score=52.15 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=31.7
Q ss_pred hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEe
Q 008323 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 358 ~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD 395 (570)
+...|++++|.|||+|..|..+|++|...|+ ++.+.+
T Consensus 11 ~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 11 DLSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred ChhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 4678899999999999999999999999998 454433
No 179
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.21 E-value=0.27 Score=48.72 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=28.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 4678999998 69999999999999986 5666554
No 180
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.22 Score=49.65 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=28.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.|+ |++|.++|+.|+..|. ++.+++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 57889999996 8999999999999996 5776554
No 181
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.23 Score=49.44 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=29.1
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.| .|++|.++|+.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678999998 57999999999999997 5777655
No 182
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.12 E-value=0.17 Score=55.47 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=31.7
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|.+++|.|||.|.+|..+|+.+...|. ++..+|+
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~ 182 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDI 182 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 56899999999999999999999999997 5666664
No 183
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.26 Score=50.36 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=28.9
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| .|++|.++|+.|+..|. ++.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6678899997 88999999999999997 5777664
No 184
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.10 E-value=0.23 Score=50.16 Aligned_cols=37 Identities=8% Similarity=0.250 Sum_probs=31.0
Q ss_pred hhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 360 ~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.++++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3577899999986 8999999999999985 47887763
No 185
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.09 E-value=0.28 Score=48.32 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=27.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.|+ |++|..+|+.|+..|.+ +.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence 56789999995 89999999999999964 555443
No 186
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=94.08 E-value=0.13 Score=54.45 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=29.1
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHH-HccCCeEEEEe
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLD 395 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La-~~GV~~ItlVD 395 (570)
..|.++++.|||.|.+|..||+.|. ..|+ ++...|
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~ 176 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNA 176 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEEC
Confidence 4689999999999999999999997 7776 344544
No 187
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.07 E-value=0.37 Score=53.77 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=66.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCc--HHHHHHHHHHhh-CCCcEEEE
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF--KAMAAVKSLERI-FPAVAAEG 441 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~--Kaeaaa~~L~~i-nP~v~v~~ 441 (570)
.+|.|||+|..|..+|++|+..|. ++++.|.+.=....+...- . +.|.. -+...++.++.+ .|.+-+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~----~---~~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA----K---EGNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh----h---hcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999997 6888887432211111000 0 00100 011223333332 24433333
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC--hHhhHHHHHHHHhcCCeEEEe
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~l~~~~~~~~~kp~I~a 505 (570)
+. ||.. +....+.+...++.-|+|++++-+ ..++... ..+...|+-++++
T Consensus 74 v~-----~~~~--------v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~flda 125 (470)
T PTZ00142 74 IK-----AGEA--------VDETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGILYLGM 125 (470)
T ss_pred eC-----ChHH--------HHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCeEEcC
Confidence 22 1111 112234555666778999998765 3344444 5666789989987
No 188
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=94.02 E-value=0.36 Score=43.41 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=26.7
Q ss_pred hccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 472 ILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 472 i~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
+.+.|+||+|+++..++.+...+ .+.|+.+|+.
T Consensus 64 ~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~ 96 (121)
T PF01118_consen 64 LSDVDVVFLALPHGASKELAPKL-LKAGIKVIDL 96 (121)
T ss_dssp HTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEES
T ss_pred hhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeC
Confidence 38999999999998887766666 7888899986
No 189
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.01 E-value=0.22 Score=52.01 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.2
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
..+|+|||+|.+|..+|+.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3689999999999999999999997 47888776
No 190
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=93.99 E-value=0.26 Score=48.78 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=29.2
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 57899999996 8999999999999996 6777654
No 191
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=93.89 E-value=0.13 Score=55.80 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=30.9
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|++++|.|||+|.+|..+|+.|...|++ +..+|+
T Consensus 112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CCcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 368999999999999999999999999974 555564
No 192
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.85 E-value=0.72 Score=43.47 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=56.1
Q ss_pred EEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 367 VlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
|+|+|+ |.+|..+++.|+..| -+++.+ +| ...|.+. .+++++ +..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~----------~R------------~~~~~~~--------~~~~~~--~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTAL----------VR------------SPSKAED--------SPGVEI--IQGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEE----------ES------------SGGGHHH--------CTTEEE--EESC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEE----------ec------------Cchhccc--------cccccc--ceee
Confidence 789997 999999999999999 566662 22 1223333 455554 3433
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC----hHhhHHHHHHHHhcCCe
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT----RESRWLPTLLCANTNKI 501 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs----~e~R~l~~~~~~~~~kp 501 (570)
+ .+.+.+.+.++++|+||.+... ...-..+-..|...+++
T Consensus 48 ~----------------~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 48 L----------------FDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp T----------------TCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred e----------------hhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 2 3457788888999999998863 22223444555566654
No 193
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.81 E-value=0.31 Score=48.65 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=31.2
Q ss_pred HhhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 359 LDILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 359 ~~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.-++++++++|.| .|++|..+|+.|+..|. +++++|.
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 3457789999998 69999999999999997 6777665
No 194
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.81 E-value=0.3 Score=48.51 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.9
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| .|++|.++|+.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678999998 57999999999999995 5777665
No 195
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.37 Score=47.19 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=27.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+.+.+|+|+|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999985 89999999999999874 777554
No 196
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.78 E-value=0.35 Score=49.99 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=50.2
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
+..++++|-| .+|+|-++|+.|++-| .++.||-. .+.|-+.+++.|++.. +++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~ 59 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVAR----------------------REDKLEALAKELEDKT-GVEVE 59 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence 4678999999 6899999999999999 56666433 3458899999999887 88888
Q ss_pred EEeecc
Q 008323 441 GVVMAI 446 (570)
Q Consensus 441 ~~~~~I 446 (570)
.++.++
T Consensus 60 vi~~DL 65 (265)
T COG0300 60 VIPADL 65 (265)
T ss_pred EEECcC
Confidence 888776
No 197
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.78 E-value=0.32 Score=50.31 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++|.|||+|..|..+|.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999994 788888753
No 198
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.75 E-value=0.32 Score=50.01 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=26.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHcc--CCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWG--VRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~G--V~~ItlVD~d 397 (570)
.||.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998864 4445566654
No 199
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.73 E-value=0.095 Score=50.50 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=32.2
Q ss_pred HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 359 ~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
...|.+++|.|+|+|.+|..||+.|...|. ++..+|+
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 67 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDR 67 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEES
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecc
Confidence 478999999999999999999999999998 7777776
No 200
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.71 E-value=0.27 Score=52.00 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=29.6
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+++|+|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 466789999996 8999999999999996 5777664
No 201
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.70 E-value=0.33 Score=47.89 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=28.5
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
|++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 4678999998 58999999999999986 5777654
No 202
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.69 E-value=0.41 Score=47.85 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=30.5
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++++|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56789999996 7999999999999998 88887763
No 203
>PRK06138 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.39 Score=47.41 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=28.5
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
|++++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 5688999998 48999999999999995 5777554
No 204
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.66 E-value=0.32 Score=51.21 Aligned_cols=29 Identities=41% Similarity=0.643 Sum_probs=26.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEE
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLL 394 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlV 394 (570)
.||+|+|+|++||..+-.|.+.| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 38999999999999999999999 777773
No 205
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.65 E-value=0.25 Score=51.69 Aligned_cols=30 Identities=37% Similarity=0.620 Sum_probs=27.3
Q ss_pred EEEEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 367 CLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 367 VlIlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
|.|||+|.+|+.+|-.|+..|+ .+|+++|.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~ 31 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5799999999999999999997 56999987
No 206
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.64 E-value=0.35 Score=53.56 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=31.6
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.++.++|+|+|+|++|.++|+.|...|. +++++|..
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899999999999999999999996 59998864
No 207
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.58 E-value=0.38 Score=48.42 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=30.8
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++++++|.|+ |++|..+|+.|+..|. +++++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367889999985 9999999999999996 78887764
No 208
>PLN02253 xanthoxin dehydrogenase
Probab=93.57 E-value=0.49 Score=47.94 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=29.9
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++++++++|.| +|++|.++|+.|+..|. ++.++|.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 456788999998 68999999999999995 5777664
No 209
>PLN02602 lactate dehydrogenase
Probab=93.57 E-value=0.24 Score=53.25 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=29.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
.||.|||+|.+|+.+|-.|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999998 57999886
No 210
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=93.54 E-value=0.5 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=26.3
Q ss_pred CeEEEEcC-chHHHHHHHHHHHc-cCCeEEEEeCC
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAW-GVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~-GV~~ItlVD~d 397 (570)
.||+|+|+ |.+|..+++.+... ++.-..++|.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 48999999 99999999998864 55555667765
No 211
>PRK06199 ornithine cyclodeaminase; Validated
Probab=93.52 E-value=0.32 Score=52.82 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=60.7
Q ss_pred cCeEEEEcCchHHHHHHHHHHHc--cCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCc-EEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV-AAE 440 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~--GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v-~v~ 440 (570)
.++++|+|+|.-|..-++.++.. ++++|.++|. ...|+++.++++++.++++ ++.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~~~~~~~v~ 212 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAETYPQITNVE 212 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcCCCceEE
Confidence 57999999999999999999873 4889988665 4558889999998877654 344
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
.. +..++.++++|||+.||-+.+
T Consensus 213 ~~-----------------------~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 213 VV-----------------------DSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred Ee-----------------------CCHHHHHcCCCEEEEccCCCC
Confidence 33 345677799999999987644
No 212
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.51 E-value=0.65 Score=50.72 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
+|+|+|+|.+|..+++.|...|. .++++|.+. .+++.+.+. .+ +..+..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~----------------------~~~~~~~~~-----~~--~~~~~gd 51 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE----------------------ERLRRLQDR-----LD--VRTVVGN 51 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH----------------------HHHHHHHhh-----cC--EEEEEeC
Confidence 79999999999999999999885 577877622 122222221 12 2222221
Q ss_pred cCCCCCCCCCccccccccchHHHHHh-hccCCEEEEecCChHhhHHHHHHHHhc
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANT 498 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~l~~~~~~~~ 498 (570)
. .+...+++. +.++|.||.++++.+.-..+...++.+
T Consensus 52 ~----------------~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 52 G----------------SSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred C----------------CCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 1 123455555 788999999998877766666777765
No 213
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.51 E-value=0.53 Score=46.35 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=30.2
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899998 67999999999999997 78887653
No 214
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.49 E-value=0.27 Score=51.82 Aligned_cols=32 Identities=34% Similarity=0.658 Sum_probs=28.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.||+|||+|.+|+.+|..|+..| .+++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG-ADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC-CcEEEEecH
Confidence 47999999999999999999999 468888864
No 215
>PRK06046 alanine dehydrogenase; Validated
Probab=93.49 E-value=0.3 Score=51.72 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=54.0
Q ss_pred cCeEEEEcCchHHHHHHHHHH-HccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La-~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
..+|.|+|+|..|...++.|. .-+++.+.++|. ...+++.+++.+++.++ +++..+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~~ 185 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTVA 185 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence 579999999999999999998 457888888766 34466777777765432 333322
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
+..++.++ +|+|+.||-+.+
T Consensus 186 -----------------------~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 186 -----------------------EDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred -----------------------CCHHHHhh-CCEEEEecCCCC
Confidence 12334455 999999998754
No 216
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.48 Score=48.32 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=25.8
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++.++|.|+||+|.++|+.|+ .| .++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeC
Confidence 457888899999999999996 68 57888765
No 217
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.44 E-value=0.81 Score=50.00 Aligned_cols=96 Identities=21% Similarity=0.304 Sum_probs=63.3
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
+...+++|+|+|.+|..+++.|...|. .++++|.+. .+.+. +++..+++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~----------------------~~~~~----~~~~~~~~~~-- 279 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP----------------------ERAEE----LAEELPNTLV-- 279 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH----------------------HHHHH----HHHHCCCCeE--
Confidence 467899999999999999999999885 678887632 12222 2222233332
Q ss_pred EeeccCCCCCCCCCccccccccchHHH-HHhhccCCEEEEecCChHhhHHHHHHHHhcCCeE
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRL-TDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l-~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~ 502 (570)
+..+. .+.+.+ +.-++++|+|+.++++.+.-..+..+++.++.+-
T Consensus 280 i~gd~----------------~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ 325 (453)
T PRK09496 280 LHGDG----------------TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKK 325 (453)
T ss_pred EECCC----------------CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCe
Confidence 22111 123334 3346789999999988777777777888877653
No 218
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.42 E-value=0.11 Score=53.75 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++|+|+|+||.|..++..|...|+.+|++++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999998874
No 219
>PRK08589 short chain dehydrogenase; Validated
Probab=93.40 E-value=0.45 Score=48.26 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=29.0
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++++|.|+ |++|.++|+.|+..|. ++.+++.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r 38 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDI 38 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999985 8999999999999995 5666553
No 220
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.44 Score=48.17 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=26.8
Q ss_pred ccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r 35 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMR 35 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeC
Confidence 456789988 58999999999999995 4666655
No 221
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.37 E-value=0.38 Score=47.89 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=32.1
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++++|+|.| .|++|..+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 36788999999 48999999999999998878887763
No 222
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.4 Score=50.65 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=29.4
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++|+|.|+ |++|.++|+.|+..|. ++++++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 456789999985 8999999999999996 6777664
No 223
>PRK06196 oxidoreductase; Provisional
Probab=93.34 E-value=0.31 Score=50.67 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=28.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|.|+ |++|.++|+.|+..|. ++++++.
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R 58 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPAR 58 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999996 8999999999999996 5777665
No 224
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.33 E-value=0.34 Score=47.92 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=25.1
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeE
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~I 391 (570)
+.+++++|.| .|++|.++++.|+..|..-+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~ 32 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA 32 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 4567899998 58999999999999996544
No 225
>PLN02240 UDP-glucose 4-epimerase
Probab=93.28 E-value=0.48 Score=49.57 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=29.2
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
|++++|+|.|+ |.+|..+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 9999999999999994 6888774
No 226
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.38 Score=49.59 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=29.7
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.| .||+|..+|+.|+..|. ++.+++.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 36788999998 58999999999999996 6777665
No 227
>PLN02306 hydroxypyruvate reductase
Probab=93.26 E-value=0.25 Score=53.72 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=31.1
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHH-HccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La-~~GV~~ItlVD~ 396 (570)
..|.+++|.|||.|.+|..+|+.|. ..|+ ++..+|.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~ 197 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL 197 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 4689999999999999999999985 7787 5777776
No 228
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.24 E-value=0.45 Score=49.57 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=28.4
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+.+++|+|.| .|++|.++++.|+..| .++++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 3567899998 5899999999999999 56777664
No 229
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.24 E-value=0.43 Score=47.39 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.2
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 36678899998 78999999999999996 7888776
No 230
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.20 E-value=0.56 Score=45.97 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=26.1
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEE
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~It 392 (570)
|.+++++|+|+ |++|..+++.|+..|.+-+.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~ 34 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVI 34 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 56789999985 99999999999999975443
No 231
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.20 E-value=0.34 Score=46.50 Aligned_cols=39 Identities=23% Similarity=0.515 Sum_probs=29.4
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~V 399 (570)
-.|..++|+|+|-|-+|.-+|+.|..+| -+++++|.|.+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi 57 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI 57 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence 4678899999999999999999999999 77888877654
No 232
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.17 E-value=0.46 Score=46.81 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=29.3
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r 38 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGR 38 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 456789999985 9999999999999996 5777655
No 233
>PRK05717 oxidoreductase; Validated
Probab=93.14 E-value=0.44 Score=47.53 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=29.7
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|.| .|++|.++|+.|+..|. ++.++|..
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 4578899998 58999999999999995 78887754
No 234
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.13 E-value=0.51 Score=46.61 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.4
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999996 9999999999999995 6777665
No 235
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.12 E-value=0.63 Score=46.48 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.7
Q ss_pred CeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899986 9999999999999995 7888765
No 236
>PRK08303 short chain dehydrogenase; Provisional
Probab=93.10 E-value=0.61 Score=48.67 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=30.3
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.|+++.++|.|+ +|+|.++|+.|+..|. ++.+++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 367889999986 6899999999999996 68887764
No 237
>PRK12744 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.53 Score=47.04 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.7
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEE
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~Itl 393 (570)
.+++++|+|.| .|++|.++|+.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 45678999998 7899999999999999765544
No 238
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=93.08 E-value=0.54 Score=46.89 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=28.3
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEe
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD 395 (570)
++.+++|+|+| .|++|..+++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 46789999998 789999999999999964 55554
No 239
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.06 E-value=0.28 Score=52.06 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=30.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccC-CeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
++-.||+|+|+ |.+|+.+|..|+..|. .+|.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45669999998 9999999999997776 57999998
No 240
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.05 E-value=0.59 Score=41.15 Aligned_cols=86 Identities=17% Similarity=0.247 Sum_probs=55.3
Q ss_pred eEEEEcCchHHHHHHHHHHHcc--CCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 008323 366 KCLLLGAGTLGCQVARMLMAWG--VRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~G--V~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~ 443 (570)
||+|||+|..|...++.+...+ +.-..++|. ...+++.+++. + ++. .+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------------------~~~~~~~~~~~----~-~~~--~~~ 52 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------------------DPERAEAFAEK----Y-GIP--VYT 52 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------------------SHHHHHHHHHH----T-TSE--EES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------------------CHHHHHHHHHH----h-ccc--chh
Confidence 7999999999999999999883 222234444 22344444322 2 222 221
Q ss_pred eccCCCCCCCCCccccccccchHHHHHhhc--cCCEEEEecCChHhhHHHHHHHHhcCCeEEE
Q 008323 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (570)
Q Consensus 444 ~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~ 504 (570)
+++++++ +.|+|+.+|.+ ..+..+...|...|++++.
T Consensus 53 -----------------------~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 53 -----------------------DLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp -----------------------SHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred -----------------------HHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence 2334444 78999999987 5577777888888887664
No 241
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.01 E-value=0.57 Score=52.56 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.||.|||+|..|+.+|.+|++.|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 479999999999999999999996 78888873
No 242
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=92.98 E-value=0.51 Score=48.78 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=26.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHc--cCCeEEEEeCC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNG 397 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~--GV~~ItlVD~d 397 (570)
+..||.|||+|.+|..+++.|... |+.-..+.|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 457999999999999999999874 44333355553
No 243
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=92.97 E-value=0.091 Score=53.87 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=36.7
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCC----------eEEEEeCCcc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR----------KITLLDNGRV 399 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~----------~ItlVD~d~V 399 (570)
.+|++.||+++|+|+.|..||+.|..+|++ +|.++|..=+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 678899999999999999999999999998 9999998643
No 244
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.97 E-value=0.54 Score=47.29 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.2
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r 42 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAAR 42 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 5688999998 45799999999999997 7888765
No 245
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.95 E-value=0.45 Score=47.99 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=28.9
Q ss_pred hccCeEEEEcC---chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa---GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++.++|.|+ +|+|.++|+.|++.|. ++.+++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 56789999997 5999999999999996 5777654
No 246
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.95 E-value=0.39 Score=47.94 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=30.7
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++++|+|+|+ |++|.++++.|+..|. +++++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 477899999996 9999999999999995 67777654
No 247
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.95 E-value=0.37 Score=50.63 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=29.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccC-CeEEEEeCC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDNG 397 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~d 397 (570)
||.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 79999999999999999999996 789999963
No 248
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=92.94 E-value=0.6 Score=46.27 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=31.9
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+.+++++|+|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~ 45 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT 45 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence 567889999997 78899999999999996 77887764
No 249
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.85 E-value=0.62 Score=46.04 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.0
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++|.| .|++|..+++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 4789998 69999999999999995 57777663
No 250
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.78 E-value=0.34 Score=51.14 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=51.4
Q ss_pred cCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
..++.|+|+|.-|-.-++.++. .++++|.++|. ...+++..++++++ . ++.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence 4589999999999999998876 67899999664 34578899999998 4 6666544
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
+..++.++++|+|+.||-+.+
T Consensus 184 -----------------------~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 184 -----------------------DSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp -----------------------SSHHHHHTTSSEEEE----SS
T ss_pred -----------------------cchhhhcccCCEEEEccCCCC
Confidence 345677899999999998844
No 251
>PRK05855 short chain dehydrogenase; Validated
Probab=92.76 E-value=0.5 Score=52.58 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=30.6
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++.+++|+| .||+|.++|+.|+..|.+ +.+++.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 567788999998 599999999999999975 777664
No 252
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.75 E-value=0.78 Score=45.82 Aligned_cols=93 Identities=23% Similarity=0.182 Sum_probs=62.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.++.|+|.|-+|..+|+.|+..| -++++-- ...+|+.+++.... .|. +++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs----------------------~r~~~~~~a~a~~l--~~~--i~~--- 51 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGS----------------------SRGPKALAAAAAAL--GPL--ITG--- 51 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEec----------------------CCChhHHHHHHHhh--ccc--ccc---
Confidence 47899999999999999999999 4444410 02344443333322 232 222
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhc-CCeEEEeeeC
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITAALG 508 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~-~kp~I~aalG 508 (570)
-..++..+.+||||++.--....-.+..+.... +|.+|++...
T Consensus 52 ---------------------~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 52 ---------------------GSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred ---------------------CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 122345578999999998877777777777666 5999998544
No 253
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.75 E-value=0.57 Score=46.74 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=30.2
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+.+++++|.| .|++|.++|+.|+..|. ++.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 5678999998 59999999999999996 577777643
No 254
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.73 E-value=0.16 Score=53.80 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=32.9
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++..||.|||+|.+|+.+|..++..|+..|.|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4668999999999999999999999987799999643
No 255
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.61 Score=46.31 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=29.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+.+++|+|.| .|++|..+|+.|+.-|. +++++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678999998 58999999999999996 7888764
No 256
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.68 E-value=0.16 Score=53.61 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=33.6
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
.++.||.|||+|.+|..+|..|+..|+..|.|+|-+.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4678999999999999999999999988899999753
No 257
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=92.67 E-value=0.97 Score=47.49 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCe--EEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRK--ITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~--ItlVD~d~ 398 (570)
.+|.|||+||.||.++..|.+.|+.. +..+|.|.
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~ 36 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDA 36 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 37999999999999999999999864 44566655
No 258
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.65 E-value=0.61 Score=48.64 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=65.0
Q ss_pred cchHhhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhC
Q 008323 356 SLNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (570)
Q Consensus 356 ~l~~~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~in 434 (570)
.+..+++.++.|+|-|| .|+|-++|+.|++.|..-+.++ . -..+-+.+++.+++..
T Consensus 4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva-r----------------------~~rrl~~v~~~l~~~~ 60 (282)
T KOG1205|consen 4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA-R----------------------RARRLERVAEELRKLG 60 (282)
T ss_pred cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee-h----------------------hhhhHHHHHHHHHHhC
Confidence 34568999999999994 6999999999999997655541 1 2345666777777777
Q ss_pred CCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEe
Q 008323 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481 (570)
Q Consensus 435 P~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~ 481 (570)
|.-++..+++++ +..++...-.+.+...+...|++|+.
T Consensus 61 ~~~~v~~~~~Dv---------s~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 61 SLEKVLVLQLDV---------SDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred CcCccEEEeCcc---------CCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 655677777766 22333333344455666788988874
No 259
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.64 E-value=0.48 Score=49.44 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=64.0
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhh-CCCcEEEEEee
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~i-nP~v~v~~~~~ 444 (570)
+|.+||+|..|..+|++|+..|. +++++|.+.-....+ .+. |..-+....+.+... .+++-+...+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~---g~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEE---GATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHC---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence 69999999999999999999995 588888753211111 011 222121222223322 24444444321
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecC-ChHhhHHHHHHHHhcCCeEEEe
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~e~R~l~~~~~~~~~kp~I~a 505 (570)
. +......+.+...+..-++||+++- +.+.-..+...+...|+-++++
T Consensus 70 ~-------------~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 70 G-------------EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred C-------------cHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence 0 0011112333444555678888744 3334344557788889989987
No 260
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=92.64 E-value=0.56 Score=46.70 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=28.7
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.|.+++++|.| .|++|..+|+.|+..|. ++.++|.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 35678999998 68999999999999995 6666553
No 261
>PRK06128 oxidoreductase; Provisional
Probab=92.57 E-value=0.68 Score=47.76 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=28.4
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEE
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLL 394 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlV 394 (570)
.+|++++|+|.| .|++|..+|+.|++.|. ++.++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~ 85 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGA-DIALN 85 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEE
Confidence 467889999998 59999999999999996 45554
No 262
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.55 E-value=0.67 Score=46.27 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=30.6
Q ss_pred hccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++.++|+|.|++ ++|..+|+.|+..|. ++.+++...
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~ 41 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSP 41 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCc
Confidence 567889999984 799999999999996 788887643
No 263
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.54 E-value=0.53 Score=47.22 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.1
Q ss_pred hhccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++.++|.|++ |+|.++|+.|++.|. ++.+++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecC
Confidence 3678899999985 999999999999996 4666654
No 264
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.54 E-value=0.64 Score=48.70 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=58.4
Q ss_pred hHhhhccCeEEEEcCc-hHHHHHHHHHHHccCCeEEEEeCCccc---ccCCCcc---cCCCcccccCCCC-cHHHHHHHH
Q 008323 358 NLDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNGRVA---MSNPLRQ---SLYTLDDCLNGGD-FKAMAAVKS 429 (570)
Q Consensus 358 ~~~~L~~~kVlIlGaG-gLG~~VA~~La~~GV~~ItlVD~d~Vs---~sNl~RQ---~L~~~~Dv~~~Gk-~Kaeaaa~~ 429 (570)
-++.+++..|||-|.| |+|-++|..+++.|. ++.++|-..=. .-+..|+ .-+=.-|+ .+ ......|++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi---s~~eei~~~a~~ 107 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDI---SDREEIYRLAKK 107 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecC---CCHHHHHHHHHH
Confidence 4678899999999865 899999999999997 88888853321 1111111 11112344 33 345566667
Q ss_pred HHhhCCCcEEEEEeeccCCCCCCCC
Q 008323 430 LERIFPAVAAEGVVMAIPMPGHPVP 454 (570)
Q Consensus 430 L~~inP~v~v~~~~~~Ipm~g~~~~ 454 (570)
+++..-.|.+-.-+.-| ||+|++-
T Consensus 108 Vk~e~G~V~ILVNNAGI-~~~~~ll 131 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGI-VTGKKLL 131 (300)
T ss_pred HHHhcCCceEEEecccc-ccCCCcc
Confidence 77666666665555555 6666654
No 265
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.51 E-value=0.64 Score=46.72 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=28.6
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++++|.| .|++|.++++.|+..|.. +.++|.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 45778999998 579999999999999965 666553
No 266
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.49 E-value=0.79 Score=45.94 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=29.6
Q ss_pred hhhccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEe
Q 008323 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 360 ~~L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD 395 (570)
.+|++++|+|.|++ |+|.++|+.|+..|. ++.+++
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 35788999999985 899999999999997 566655
No 267
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.49 E-value=0.53 Score=52.82 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=34.5
Q ss_pred ccCeEEEEcCchHHHHHHHHHHH--ccCCeEEEEeCCcccccCCCcc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMA--WGVRKITLLDNGRVAMSNPLRQ 407 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~--~GV~~ItlVD~d~Vs~sNl~RQ 407 (570)
..+||+|||+|..|.+.|+.|++ .| .+|+++|.... +-.+.|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p~-pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLPT-PFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCCC-CcceEee
Confidence 46789999999999999999997 56 58999998764 3345553
No 268
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.48 E-value=0.53 Score=46.29 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=26.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEE
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~Itl 393 (570)
+++++|+|.| .|++|..+|+.|+..|.. +++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~ 34 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAV 34 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence 5678999998 599999999999999975 444
No 269
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.47 E-value=0.32 Score=50.84 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
.+|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999996 799988753
No 270
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.46 E-value=0.2 Score=53.25 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=29.2
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++|.|||+|..|+.+|..++..| -.++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 58999999999999999999999 6778888643
No 271
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.42 E-value=0.32 Score=51.75 Aligned_cols=93 Identities=30% Similarity=0.331 Sum_probs=60.1
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
..+.++++.|+|.|.+|..||+.+..-|. +|...|+ .|+ ++.+ +.+. .
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~--------~~~-------------~~~~---~~~~-------~ 189 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDR--------SPN-------------PEAE---KELG-------A 189 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECC--------CCC-------------hHHH---hhcC-------c
Confidence 47889999999999999999999994442 3333222 111 1110 0000 1
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec-CChHhhHHHHHHHHhcCC---eEEEeeeC
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANTNK---ITITAALG 508 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~l~~~~~~~~~k---p~I~aalG 508 (570)
. + .+ ++++++++|+|.+.. .+.++|.++|.---+.-| .+||.+.|
T Consensus 190 ~-y----------------------~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG 238 (324)
T COG1052 190 R-Y----------------------VD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG 238 (324)
T ss_pred e-e----------------------cc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence 1 1 12 778899999988854 688899998877655444 46776544
No 272
>PRK07024 short chain dehydrogenase; Provisional
Probab=92.39 E-value=0.68 Score=46.30 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.9
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.++|+|.| .|++|.++++.|+..|. +++++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35789987 78999999999999997 78887763
No 273
>PLN00106 malate dehydrogenase
Probab=92.38 E-value=0.3 Score=51.91 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=31.3
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccC-CeEEEEeCCc
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV-~~ItlVD~d~ 398 (570)
..||+|+|+ |.+|+.+|..|+..|. ..|.|+|-..
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 469999999 9999999999998887 6799999855
No 274
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.37 E-value=0.12 Score=53.64 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=29.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
.+|.|||+|..|+.+|..|++.|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999995 799988743
No 275
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.72 Score=45.86 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=31.1
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++++++|.| .|++|..+++.|+..|. +++++|.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 46789999998 58999999999999996 78887764
No 276
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.34 E-value=0.81 Score=45.72 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.3
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++++|+|.| .|++|..+|+.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 46789999998 589999999999999964 5565543
No 277
>PRK12746 short chain dehydrogenase; Provisional
Probab=92.33 E-value=0.68 Score=45.95 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.9
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCe
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ 390 (570)
++++++++|.| .|++|.++|+.|+..|..-
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v 33 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALV 33 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46778999998 7899999999999998643
No 278
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.31 E-value=0.65 Score=46.37 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.4
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 5789998 68999999999999995 5666553
No 279
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.30 E-value=0.18 Score=49.74 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=32.8
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
..|++++|+|+|.|.+|..+|+.|...|. +++++|.+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 46789999999999999999999999996 77787754
No 280
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=92.26 E-value=0.54 Score=49.39 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=58.6
Q ss_pred ccCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
..+++.|+|+|.-|..-++.++. .++++|.++|. ...|++..++++++.. +++++.
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~f~~~~~~~~-~~~v~~ 172 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR----------------------NFDHARAFAERFSKEF-GVDIRP 172 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEE
Confidence 36899999999999999888875 46778887554 4557888888888643 334433
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
. +..++.+.++|||+.+|.+.+
T Consensus 173 ~-----------------------~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 173 V-----------------------DNAEAALRDADTITSITNSDT 194 (301)
T ss_pred e-----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 2 345677899999999999855
No 281
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.23 E-value=0.74 Score=44.91 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+.+++|+|.| .|++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 3467899998 599999999999999976 7777654
No 282
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=92.21 E-value=0.59 Score=49.58 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=53.5
Q ss_pred cCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
.+++.|||+|..|...++.|.. ..+.+|.+.|. ...|++..++++++. ++++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~--g~~v~~~ 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDY--EVPVRAA 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhh--CCcEEEe
Confidence 5789999999999998888765 34566666544 455777888888754 2333322
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
...++.++++|+|+.||-+.+
T Consensus 184 -----------------------~~~~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 184 -----------------------TDPREAVEGCDILVTTTPSRK 204 (325)
T ss_pred -----------------------CCHHHHhccCCEEEEecCCCC
Confidence 234566789999999997744
No 283
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.19 E-value=1.1 Score=45.92 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=26.7
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccC---CeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV---~~ItlVD~ 396 (570)
.+.||.|||+|.+|+.+++.|...|+ .++.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 35689999999999999999999873 23555443
No 284
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.10 E-value=0.94 Score=45.06 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=27.1
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467999986 8999999999999995 6888765
No 285
>PRK07904 short chain dehydrogenase; Provisional
Probab=92.08 E-value=1.2 Score=44.71 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.9
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++|+|.| .||+|.++|+.|+..|--++++++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 45688887 7899999999999987457777654
No 286
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.07 E-value=0.56 Score=47.28 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.0
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.|+ ||+|..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r 37 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDL 37 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence 45678999985 89999999999999964 666554
No 287
>PTZ00188 adrenodoxin reductase; Provisional
Probab=92.07 E-value=0.77 Score=51.53 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=57.9
Q ss_pred ccCeEEEEcCchHHHHHHHHHH-HccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhh--CCCcEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI--FPAVAA 439 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La-~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~i--nP~v~v 439 (570)
+.+||+|||+|..|++.|+.|+ ..| -+++|+|....-. =+.|.-.- . -.++...+.+.+.++ .+.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g-~~VtlfEk~p~pg-GLvR~GVa-P------dh~~~k~v~~~f~~~~~~~~v~f 108 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHER-VKVDIFEKLPNPY-GLIRYGVA-P------DHIHVKNTYKTFDPVFLSPNYRF 108 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC-CeEEEEecCCCCc-cEEEEeCC-C------CCccHHHHHHHHHHHHhhCCeEE
Confidence 5679999999999999999876 456 4699999866543 23332211 1 123333444444332 255555
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCCh
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (570)
.+ ...| |. ..+ ++++.+.||.||+++...
T Consensus 109 ~g-nv~V---G~----------Dvt---~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 109 FG-NVHV---GV----------DLK---MEELRNHYNCVIFCCGAS 137 (506)
T ss_pred Ee-eeEe---cC----------ccC---HHHHHhcCCEEEEEcCCC
Confidence 42 2222 11 112 344456899999999875
No 288
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.04 E-value=0.38 Score=49.21 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=27.4
Q ss_pred EEEEcC-chHHHHHHHHHHHcc--C-CeEEEEeCC
Q 008323 367 CLLLGA-GTLGCQVARMLMAWG--V-RKITLLDNG 397 (570)
Q Consensus 367 VlIlGa-GgLG~~VA~~La~~G--V-~~ItlVD~d 397 (570)
|.|||+ |.+|..+|..|+..| . .+|+|+|.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~ 35 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDID 35 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCC
Confidence 579999 999999999999998 4 689999863
No 289
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.03 E-value=0.78 Score=49.23 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=26.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+|.|||+|.+|..+|+.|.+.|. .+.++|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence 479999999999999999999996 5666665
No 290
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=92.02 E-value=1.1 Score=48.07 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=30.2
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEE--EeCCc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITL--LDNGR 398 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~Itl--VD~d~ 398 (570)
.+.+|.|||+||.||.++..|.+.|+..+.+ +|.|.
T Consensus 16 ~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~ 53 (349)
T TIGR00065 16 NKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA 53 (349)
T ss_pred cCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence 4568999999999999999999999875544 67765
No 291
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.99 E-value=0.68 Score=46.50 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=28.0
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEE
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLL 394 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlV 394 (570)
..|++++++|.| .||+|.++|+.|+..|.. ++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 346788999998 589999999999999964 5554
No 292
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.99 E-value=0.73 Score=46.88 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=29.8
Q ss_pred hccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecc
Confidence 678899999986 799999999999996 57777653
No 293
>PRK07589 ornithine cyclodeaminase; Validated
Probab=91.98 E-value=0.64 Score=49.91 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=55.8
Q ss_pred cCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
..+++|+|+|..|-.-++.+.. ..+++|.+++. ...|+++.++++++ +++++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~--~~~~v~~~ 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAG--PGLRIVAC 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHh--cCCcEEEe
Confidence 5789999999999888876653 46778887544 45578888888876 24444432
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
+..++.++++|||++||.+.+
T Consensus 185 -----------------------~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 185 -----------------------RSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred -----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 346678899999999997644
No 294
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.95 E-value=0.67 Score=46.82 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=34.5
Q ss_pred chHhhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 357 l~~~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+.|.++++++++|.|+ ||+|.++|+.|+..|. ++.+++.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 5688999999999985 7999999999999996 67777764
No 295
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=91.92 E-value=1.3 Score=38.40 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=58.7
Q ss_pred ccCeEEEEcCchHHHHHHH-HHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVAR-MLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~-~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
+..+|+|+|+|++|..++. .....|.+-..++|.+. +.+ |+ ++.+
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~---G~-----------------~i~g 47 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKI---GK-----------------EIGG 47 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTT---TS-----------------EETT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------Ccc---Cc-----------------EECC
Confidence 4579999999999998874 34466777777877632 122 32 1112
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEee
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA 506 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~aa 506 (570)
++. ..+.+.+.+.+ +.|+.+++.....++....+++..-=+.+++.+
T Consensus 48 ipV-----------------~~~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft 94 (96)
T PF02629_consen 48 IPV-----------------YGSMDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVNFT 94 (96)
T ss_dssp EEE-----------------ESSHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEES
T ss_pred EEe-----------------eccHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 211 11356676766 599999999888888888888774334455544
No 296
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.92 E-value=0.91 Score=44.46 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=28.9
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 7899999999999997 6777655
No 297
>PRK07791 short chain dehydrogenase; Provisional
Probab=91.91 E-value=0.88 Score=46.71 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=29.2
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.| .+|+|.++|+.|+..|. ++.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeC
Confidence 46778899998 67999999999999996 5677664
No 298
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.90 E-value=1.1 Score=49.52 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=26.4
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+|+|+| +|.+|..+|+.|...|. +++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 799997 89999999999999995 6788775
No 299
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.85 E-value=0.73 Score=45.80 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.0
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.| .|++|..+++.|+..|.. +++++.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 46789999998 599999999999999974 787764
No 300
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.82 E-value=0.9 Score=46.97 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.7
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+|.|||+|.+|..+|++|++.|. +++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999995 57777764
No 301
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.81 E-value=0.76 Score=46.11 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=29.5
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++++|.|+ |++|..+|+.|+..|. ++.++|..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56889999985 7899999999999996 57777754
No 302
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.81 E-value=0.87 Score=44.30 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=30.4
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++++++|.|+ |++|..+++.|+..|.+ +.++|.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 356789999984 99999999999999975 8887764
No 303
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.77 E-value=0.49 Score=50.27 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=28.9
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccC-C-----eEEEEeC
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV-~-----~ItlVD~ 396 (570)
-.||.|||+ |.+|+.+|-.|+..|+ + +|.|+|.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 358999998 9999999999999887 4 6888876
No 304
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.76 E-value=1.1 Score=46.51 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=26.1
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++|+|.| +|++|+.+++.|+..|. ++++++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r 37 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVR 37 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEc
Confidence 57899998 59999999999999995 4555443
No 305
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.72 E-value=0.57 Score=48.87 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=27.7
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+|.|||+|..|+.+|++|++.| -+++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g-~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG-HDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC-CEEEEEECCH
Confidence 6999999999999999999999 4677777654
No 306
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=91.71 E-value=0.8 Score=45.19 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.5
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEE
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKIT 392 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~It 392 (570)
++++.|+|.| .|++|..+|+.|+..|...+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 3567889998 599999999999999965433
No 307
>PRK06720 hypothetical protein; Provisional
Probab=91.70 E-value=0.99 Score=43.27 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=29.7
Q ss_pred hccCeEEEEcCc-hHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaG-gLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++.++|.|++ |+|..+++.|+..| .++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 578899999964 79999999999999 568888864
No 308
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.67 E-value=0.83 Score=48.13 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=29.1
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|.|+ |.+|+++++.|+..|. +++.+|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999995 8899999999999994 57777654
No 309
>PRK06841 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.97 Score=44.83 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=29.5
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|+|.|+ |++|.++|+.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56889999995 9999999999999996 5777765
No 310
>PRK12827 short chain dehydrogenase; Provisional
Probab=91.58 E-value=1 Score=44.21 Aligned_cols=34 Identities=41% Similarity=0.596 Sum_probs=28.5
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| .|++|..+|+.|+..|. ++++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcC
Confidence 4578899998 69999999999999996 4677663
No 311
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.57 E-value=1.1 Score=46.49 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=29.5
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
-.+++++++|.| .|++|.++|+.|+..|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 356788999998 57999999999999996 5666654
No 312
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.54 E-value=1.1 Score=44.12 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.9
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEe
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD 395 (570)
++++++++|.|+ |++|..+++.|+..|. ++++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence 356789999995 9999999999999995 466544
No 313
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.54 E-value=0.46 Score=50.20 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.6
Q ss_pred eEEEEcC-chHHHHHHHHHHHccC-CeEEEEeCC
Q 008323 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNG 397 (570)
Q Consensus 366 kVlIlGa-GgLG~~VA~~La~~GV-~~ItlVD~d 397 (570)
||.|||+ |.+|+.+|..|+.-|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 8999999 9999999999998887 689999985
No 314
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=91.49 E-value=0.21 Score=54.39 Aligned_cols=40 Identities=33% Similarity=0.538 Sum_probs=37.4
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCC--eEEEEeCCcc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRV 399 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~--~ItlVD~d~V 399 (570)
++|+..||++.|+|+.|+.+++.|...|++ +|.++|.-=+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 789999999999999999999999999998 9999998644
No 315
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=91.47 E-value=1.1 Score=44.80 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=27.8
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEe
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD 395 (570)
.+++++++|.| .|++|.++|+.|+..|.+ +.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~ 38 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINY 38 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEe
Confidence 36788999998 789999999999999964 44543
No 316
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.35 E-value=1.4 Score=50.85 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=61.6
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~ 443 (570)
+.+|+|+|+|..|..+++.|...|+ +++++|.|.- +++.++ +. +.++ +.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~----------------------~v~~~~----~~--g~~v--~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD----------------------HIETLR----KF--GMKV--FY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH----------------------HHHHHH----hc--CCeE--EE
Confidence 5799999999999999999999996 6788887542 233332 21 2222 22
Q ss_pred eccCCCCCCCCCccccccccchHHHH-HhhccCCEEEEecCChHhhHHHHHHHHhcC
Q 008323 444 MAIPMPGHPVPCQEEDSVLDDCRRLT-DLILSHDVIFLLTDTRESRWLPTLLCANTN 499 (570)
Q Consensus 444 ~~Ipm~g~~~~~~~~~~~~~~~~~l~-~li~~~DvV~~~tDs~e~R~l~~~~~~~~~ 499 (570)
.+. .+.+-++ .-++++|+|+.++|+.+.-..+...++++.
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 449 GDA----------------TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred EeC----------------CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 221 1233443 346789999999999998888888887764
No 317
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.35 E-value=0.42 Score=50.74 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.3
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccC-C-----eEEEEeC
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV-~-----~ItlVD~ 396 (570)
-.||.|+|+ |.+|+.+|..|+.-|+ + +|.|+|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 359999999 9999999999999887 4 6999886
No 318
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=91.34 E-value=1 Score=52.44 Aligned_cols=34 Identities=38% Similarity=0.550 Sum_probs=28.9
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
|++++|+|.| .|++|..+|+.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 4568899998 58999999999999996 7888765
No 319
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.96 Score=45.34 Aligned_cols=34 Identities=32% Similarity=0.587 Sum_probs=29.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| +|++|.++++.|+..|. ++++++.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r 37 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGR 37 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 4678899998 69999999999999995 5888775
No 320
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.27 E-value=0.93 Score=45.06 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=28.2
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| .+|+|.++|+.|+..|. ++.+++.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r 37 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQ 37 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence 5678999998 55799999999999996 4777654
No 321
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.97 Score=45.00 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=28.4
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.|++++++|.| .|++|..+|+.|+..|.. +++++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 36788999998 679999999999999975 555443
No 322
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.25 E-value=1.3 Score=48.38 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=31.8
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPL 405 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~ 405 (570)
||.|||+|-+|..+|..|+..|. +++.+|.+.-....+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhh
Confidence 69999999999999999999996 6889998654333333
No 323
>PRK06114 short chain dehydrogenase; Provisional
Probab=91.23 E-value=1.4 Score=44.01 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.3
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++++|.| .|++|.++|+.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999997 77999999999999996 6667665
No 324
>PRK08703 short chain dehydrogenase; Provisional
Probab=91.21 E-value=1.2 Score=43.97 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=29.8
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
|++++++|.| .|++|.++++.|+..|. ++++++.+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~ 39 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARH 39 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678999998 58999999999999996 58887754
No 325
>PRK08643 acetoin reductase; Validated
Probab=91.21 E-value=1.1 Score=44.45 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=26.6
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788887 78999999999999996 6777663
No 326
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=91.19 E-value=1.2 Score=44.37 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.2
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++++++++|.| .|++|.++|+.|+..|. +++++|.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDR 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 346788999998 48999999999999995 6777775
No 327
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.18 E-value=0.66 Score=46.71 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=30.3
Q ss_pred hhccCeEEEEcC---chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGa---GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++++++|.|+ +|+|.++|+.|++.|. ++.++|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence 367789999996 7999999999999996 67787753
No 328
>PRK08226 short chain dehydrogenase; Provisional
Probab=91.16 E-value=1.1 Score=44.78 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=30.4
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++.+++++|.| .|++|..+++.|+..|. ++++++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~ 39 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDIS 39 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence 46788999998 78999999999999996 48887653
No 329
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.15 E-value=0.8 Score=49.87 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=53.0
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccCCe------EEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhC-C
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGVRK------ITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF-P 435 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV~~------ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~in-P 435 (570)
-.||.|+|+ |.+|+.+|-.|+.-|+-. |+|+|.|. .+.|++.-+.-|..-. |
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~--------------------~~~~a~g~a~DL~d~a~~ 103 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER--------------------SKEALEGVAMELEDSLYP 103 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc--------------------cchhhhHHHHHHHHhhhh
Confidence 569999999 999999999999999843 66665543 4556666666666554 4
Q ss_pred CcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC
Q 008323 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (570)
Q Consensus 436 ~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (570)
... . + .| .. ...+-++++|+||.+...
T Consensus 104 ~~~-~-v--~i-----------------~~-~~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 104 LLR-E-V--SI-----------------GI-DPYEVFEDADWALLIGAK 130 (387)
T ss_pred hcC-c-e--EE-----------------ec-CCHHHhCCCCEEEECCCC
Confidence 321 1 1 11 00 113445899999997664
No 330
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.14 E-value=1.1 Score=47.24 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=30.6
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++.+||+|.| +|-+|+++++.|+..|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 55778999999 59999999999999984 67888763
No 331
>PRK07677 short chain dehydrogenase; Provisional
Probab=91.11 E-value=1.2 Score=44.37 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=27.6
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|.| .|++|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36788998 57899999999999997 78887764
No 332
>PRK08324 short chain dehydrogenase; Validated
Probab=91.09 E-value=1 Score=52.36 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=29.4
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+.+++|+|.| +|++|..+|+.|+..|. +++++|.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 3567899999 59999999999999997 7888775
No 333
>PRK07985 oxidoreductase; Provisional
Probab=91.08 E-value=1.3 Score=45.82 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.3
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEe
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD 395 (570)
++++++++|.| .|++|.++|+.|+..|. ++.+++
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~ 80 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISY 80 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEec
Confidence 46788999998 58999999999999996 455654
No 334
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.02 E-value=1.4 Score=46.57 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.2
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
-++.+|||.| +|.+|+.+++.|+..|. ++++++.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567899999 68999999999999985 4555443
No 335
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.92 E-value=1.1 Score=43.70 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=24.8
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCe
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ 390 (570)
++.++|+|+| .|++|.++++.|+..|..-
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 4567899998 6999999999999999753
No 336
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.89 E-value=0.3 Score=51.79 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.4
Q ss_pred CeEEEEcC-chHHHHHHHHHHHccCCe------EEEEeCC
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAWGVRK------ITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~GV~~------ItlVD~d 397 (570)
.||+|+|+ |.+|+.+|..|+..|+-. |.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 48999999 999999999999988754 9999874
No 337
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.84 E-value=1.2 Score=44.64 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.| .||+|.++|+.|+..|. ++++++.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~ 40 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGV 40 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 5678899998 78999999999999996 4666554
No 338
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=90.83 E-value=1.5 Score=45.18 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=26.0
Q ss_pred CeEEEEc-CchHHHHHHHHHHH-ccCCeEEEEe
Q 008323 365 RKCLLLG-AGTLGCQVARMLMA-WGVRKITLLD 395 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~-~GV~~ItlVD 395 (570)
.||+|+| +|..|..+++.+.. -++.-+-++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3899999 59999999999986 4667777777
No 339
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.83 E-value=1.1 Score=44.88 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=25.8
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+|+|.| .||+|.++|+.|+..|. ++.++|.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence 688998 58999999999999996 5777765
No 340
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.82 E-value=1.6 Score=44.36 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.1
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++++|.| .|++|..+|+.|+..|. ++.+++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 5678999998 68999999999999996 68887764
No 341
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.79 E-value=0.99 Score=50.42 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=30.8
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|+|.|+.|..+|+.|.+.|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 457899999999999999999999996 68888853
No 342
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.76 E-value=0.68 Score=47.86 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.5
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
||.|||+|.+|+.+|+.|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999995 68887764
No 343
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.76 E-value=1.3 Score=45.53 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=27.1
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++|||.| +|.+|+.+++.|+..|. +++.++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899999 69999999999999996 56555543
No 344
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.76 E-value=0.36 Score=46.76 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=28.1
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcc
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~V 399 (570)
||.|||+|..|..+|..+++.| -+++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence 6999999999999999999999 88999998554
No 345
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.75 E-value=0.35 Score=48.44 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=35.8
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
..|+.++|+|.|.|.+|..+|+.|...|.+.+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 457899999999999999999999999999999999764
No 346
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=90.70 E-value=1.3 Score=44.31 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=27.9
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++++.++|.| +|++|.++|+.|+..|. ++.++|.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~ 42 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINI 42 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecC
Confidence 36788999998 66899999999999995 4555543
No 347
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.68 E-value=1.3 Score=43.53 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.4
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++++|.|+ |++|..+++.|+.-|. ++++++.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467899984 9999999999999997 7888765
No 348
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.67 E-value=1.7 Score=43.88 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.6
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
..|+.+||+|.|.|.+|..+|+.|...|.+-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 56789999999999999999999999998888798874
No 349
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.63 E-value=1.5 Score=48.27 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.||+|+|+|+.|..+|+.|.+.|. .+++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 379999999999999999999996 78888864
No 350
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=90.62 E-value=0.98 Score=48.35 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=60.0
Q ss_pred CeEEEEcC-chHHHHHHHHHHHccCCeEE-EEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAWGVRKIT-LLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~GV~~It-lVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
.||+|+|+ |.+|.++++.|...-.-+++ ++++.. .. |+. +.+.+|.+....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~--------~~~~~~~l~~~~- 53 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKP--------VSEVHPHLRGLV- 53 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCC--------hHHhCccccccC-
Confidence 37999998 99999999999976334444 545431 11 332 112233221100
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe--eeCCc
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGFD 510 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a--alG~~ 510 (570)
...+ +..+.+++.+++|+||+|+.+..++.+...+. +.|+.+|+. ++.++
T Consensus 54 ~~~~-----------------~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~-~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 54 DLNL-----------------EPIDEEEIAEDADVVFLALPHGVSAELAPELL-AAGVKVIDLSADFRLK 105 (346)
T ss_pred Ccee-----------------ecCCHHHhhcCCCEEEECCCchHHHHHHHHHH-hCCCEEEeCChhhhcC
Confidence 0001 00112334458999999999988877776664 468999985 35554
No 351
>PRK07060 short chain dehydrogenase; Provisional
Probab=90.60 E-value=1.3 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=29.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999997 8999999999999997 6888775
No 352
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.58 E-value=0.47 Score=50.19 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.8
Q ss_pred eEEEEcC-chHHHHHHHHHHHccC-CeEEEEeCCc
Q 008323 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (570)
Q Consensus 366 kVlIlGa-GgLG~~VA~~La~~GV-~~ItlVD~d~ 398 (570)
||.|+|+ |.+|+.+|..|+.-|+ ..|.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 7999999 9999999999999887 6799999754
No 353
>PRK13018 cell division protein FtsZ; Provisional
Probab=90.57 E-value=2.1 Score=46.56 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=32.3
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCC--eEEEEeCCc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~--~ItlVD~d~ 398 (570)
+...+.+|.|||+||.||.++..|...|+. .+..++.|.
T Consensus 24 ~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 24 DDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 345677999999999999999999999986 456666665
No 354
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=90.52 E-value=1.3 Score=43.91 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.6
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+|+|.| .|++|..+|+.|+.-|. ++++++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 689998 58999999999999996 5777665
No 355
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=90.49 E-value=1.7 Score=42.95 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=25.3
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCe
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ 390 (570)
+++++++|.| .|++|..+|+.|+..|...
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v 33 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKV 33 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Confidence 5678999998 8999999999999999643
No 356
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.48 E-value=1.2 Score=48.69 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=30.7
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|+|+|++|..+|+.|+..|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 467899999999999999999999995 68887754
No 357
>PRK06270 homoserine dehydrogenase; Provisional
Probab=90.46 E-value=1.4 Score=47.08 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=20.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAW 386 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~ 386 (570)
.||.|+|+|++|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999999765
No 358
>PRK07201 short chain dehydrogenase; Provisional
Probab=90.43 E-value=1.3 Score=50.62 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=30.4
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++++++|.| .|++|.++++.|+..|. ++.+++.
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r 403 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR 403 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 367788999998 58999999999999996 6777664
No 359
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=90.41 E-value=1.1 Score=44.79 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=29.9
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|.|+ |++|.++|+.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56789999985 7999999999999996 58888764
No 360
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.40 E-value=3 Score=41.15 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=56.8
Q ss_pred EEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 367 VlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
|+|+|+ |.+|..|++.|+..|.. ++.+ .|. . ....++.|+.. ++.+. ..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l----------~R~-------------~-~~~~~~~l~~~--g~~vv--~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL----------VRD-------------P-SSDRAQQLQAL--GAEVV--EAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE----------ESS-------------S-HHHHHHHHHHT--TTEEE--ES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE----------Eec-------------c-chhhhhhhhcc--cceEe--ecc
Confidence 789996 99999999999996643 4441 111 1 11224445543 55543 222
Q ss_pred cCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC---hHh--hHHHHHHHHhcCCeEE
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT---RES--RWLPTLLCANTNKITI 503 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs---~e~--R~l~~~~~~~~~kp~I 503 (570)
. .+.+.+.+.+++.|.||+++.. .+. ..-+-+.|.+.|+..+
T Consensus 52 ~----------------~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 52 Y----------------DDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp T----------------T-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred c----------------CCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 2 3568889999999999999983 232 3345566666666433
No 361
>PRK06823 ornithine cyclodeaminase; Validated
Probab=90.39 E-value=1.1 Score=47.38 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=55.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
..++++|+|+|..|-.-++.+.. ..+++|.++|. ...|+++.++.+++. ++.+..
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~--~~~v~~ 182 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQAL--GFAVNT 182 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhc--CCcEEE
Confidence 35799999999999999988775 35677777544 455788888877754 233332
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
. +..++.++++|+|+.||-+.+
T Consensus 183 ~-----------------------~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 183 T-----------------------LDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred E-----------------------CCHHHHhcCCCEEEEecCCCC
Confidence 2 345677799999999998754
No 362
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.34 E-value=0.34 Score=54.78 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=31.7
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|+|+|+||+|..++..|+..|+ +|++++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999999 89998763
No 363
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=90.32 E-value=1.5 Score=44.13 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.5
Q ss_pred hccCeEEEEcC---chHHHHHHHHHHHccCCeEEEEe
Q 008323 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 362 L~~~kVlIlGa---GgLG~~VA~~La~~GV~~ItlVD 395 (570)
++++.++|.|+ +|+|.++|+.|+..|.. +.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~ 39 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITY 39 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEe
Confidence 56789999997 49999999999999964 55654
No 364
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=90.26 E-value=1.8 Score=42.86 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.1
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 4688988 68999999999999996 6777664
No 365
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.26 E-value=1.1 Score=51.86 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=30.9
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++|+|||+|..|-..|..|++.|. +++++|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 57899999999999999999999996 59999864
No 366
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.26 E-value=1.4 Score=47.15 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=64.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (570)
+|+|+|+|.+|.-.+..+...|..+|.++|.+. .|.+.|++... ..+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~----------------------~Rl~~A~~~~g-----~~~~~~~-- 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP----------------------ERLELAKEAGG-----ADVVVNP-- 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH----------------------HHHHHHHHhCC-----CeEeecC--
Confidence 899999999999999999999999999987622 23333333221 1111110
Q ss_pred cCCCCCCCCCccccccccchHHHHHhh--ccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 446 IPMPGHPVPCQEEDSVLDDCRRLTDLI--LSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 446 Ipm~g~~~~~~~~~~~~~~~~~l~~li--~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
.+ ....+...++- ..+|+||.|+.+..+......+++..|..++-+
T Consensus 222 ------------~~--~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 222 ------------SE--DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred ------------cc--ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 00 01122233333 359999999998887778888888888876655
No 367
>PRK13529 malate dehydrogenase; Provisional
Probab=90.14 E-value=1.6 Score=49.51 Aligned_cols=39 Identities=31% Similarity=0.664 Sum_probs=35.2
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHH----ccC------CeEEEEeCCc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMA----WGV------RKITLLDNGR 398 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~----~GV------~~ItlVD~d~ 398 (570)
.+|++.||+++|+|+.|..||+.|+. .|+ ++|.++|..=
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G 339 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG 339 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 67889999999999999999999997 599 6999999853
No 368
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.10 E-value=0.48 Score=51.01 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHc-cCCeEEEEeCCccccc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAW-GVRKITLLDNGRVAMS 402 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~-GV~~ItlVD~d~Vs~s 402 (570)
+...|+|||+|-+|+.+|..|++. |..+++++|.+.+-..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 456899999999999999999984 8778999999876543
No 369
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.10 E-value=2.1 Score=44.93 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=30.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+|+|.|+|++|...+..+...|.+++..+|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999999999988888765
No 370
>PRK12743 oxidoreductase; Provisional
Probab=90.09 E-value=1.5 Score=43.71 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=24.2
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEE
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLL 394 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlV 394 (570)
.++|+|.| .|++|..+|+.|+..|. ++.++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~ 32 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGIT 32 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEE
Confidence 46789998 57999999999999996 44443
No 371
>PRK09330 cell division protein FtsZ; Validated
Probab=90.06 E-value=3.2 Score=45.25 Aligned_cols=111 Identities=10% Similarity=0.143 Sum_probs=65.2
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEE--EEeCCc--ccccCCCcccCCCcccccC---CCCcHHHHHHHHHHhh
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKIT--LLDNGR--VAMSNPLRQSLYTLDDCLN---GGDFKAMAAVKSLERI 433 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~It--lVD~d~--Vs~sNl~RQ~L~~~~Dv~~---~Gk~Kaeaaa~~L~~i 433 (570)
.....+|-|||+||-||+++.+|...|+..+. .++.|. ++.+...+-.++..+--.. +|.|. ..++.
T Consensus 10 ~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe--~G~~a---- 83 (384)
T PRK09330 10 ENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPE--VGRKA---- 83 (384)
T ss_pred cccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHH--HHHHH----
Confidence 34567899999999999999999999986444 444443 2222222222221110000 01111 00000
Q ss_pred CCCcEEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecC------ChHhhHHHHHHHHhcCCeEEEe
Q 008323 434 FPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD------TRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 434 nP~v~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD------s~e~R~l~~~~~~~~~kp~I~a 505 (570)
...+.+.+.+.++++|+||.+.. +-.+- .+.++++.++++++..
T Consensus 84 ---------------------------aee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaV 133 (384)
T PRK09330 84 ---------------------------AEESREEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAV 133 (384)
T ss_pred ---------------------------HHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEE
Confidence 11234566778899999998643 34444 7889999999887765
No 372
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=90.05 E-value=1.7 Score=45.43 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=28.0
Q ss_pred ccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++|.|+ +|+|.++|+.|+..|..++.+++.
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r 36 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACR 36 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeC
Confidence 3668899985 689999999999999667777665
No 373
>PRK05599 hypothetical protein; Provisional
Probab=90.01 E-value=1.7 Score=43.44 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=23.2
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++|.| .+|+|-++|+.|+. | .++.+++.
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r 31 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G-EDVVLAAR 31 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeC
Confidence 478887 57899999999985 7 67777664
No 374
>PLN02650 dihydroflavonol-4-reductase
Probab=89.97 E-value=1.9 Score=45.34 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=26.8
Q ss_pred ccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++|||.| +|.+|+++++.|+..|. ++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 356899998 59999999999999985 5665554
No 375
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.95 E-value=1.6 Score=43.85 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=30.7
Q ss_pred hhhccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEeCC
Q 008323 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 360 ~~L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD~d 397 (570)
..++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~ 45 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLN 45 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 34678899999975 899999999999995 67777764
No 376
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.94 E-value=2.5 Score=41.89 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=24.6
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccCCeEEEEe
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD 395 (570)
+++|+|.|+ |++|..+++.|+..|.. +++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 357999984 89999999999999964 44433
No 377
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.94 E-value=0.43 Score=50.21 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=32.6
Q ss_pred HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 359 ~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
...|.+++|.|||.|.+|..+|+.|...|+ ++..+|+.
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 357999999999999999999999888887 67777753
No 378
>PRK07069 short chain dehydrogenase; Validated
Probab=89.83 E-value=2.1 Score=42.11 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=25.2
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+|+|.| .|++|..+++.|++.|. ++.+++.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r 31 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDI 31 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 478887 78999999999999995 6777764
No 379
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.76 E-value=1.6 Score=44.14 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=28.8
Q ss_pred hhhccCeEEEEcC---chHHHHHHHHHHHccCCeEEEEe
Q 008323 360 DILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 360 ~~L~~~kVlIlGa---GgLG~~VA~~La~~GV~~ItlVD 395 (570)
++++++.++|.|+ +|+|.++|+.|+..|. ++.+.+
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~ 39 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTY 39 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEc
Confidence 3578899999994 5899999999999996 566654
No 380
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.67 E-value=1.3 Score=53.50 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.9
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.++||+|||+|..|...|..|++.|. ++|++|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence 48999999999999999999999995 78998864
No 381
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.67 E-value=0.5 Score=49.47 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.2
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+.++||+|+|+|.+|..+++.|.+.|. +++++|..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4568999999999999999999999997 89997763
No 382
>PRK07775 short chain dehydrogenase; Provisional
Probab=89.59 E-value=2.6 Score=42.74 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.7
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
...+.++|.| .|++|.++++.|+..|. ++.+++.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r 42 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF-PVALGAR 42 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 4557899998 59999999999999997 5666554
No 383
>PRK05884 short chain dehydrogenase; Provisional
Probab=89.59 E-value=1.3 Score=43.57 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.2
Q ss_pred eEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 366 kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
|++|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6899985 8999999999999995 67777653
No 384
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.58 E-value=1.8 Score=42.18 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=26.4
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEE
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~Itl 393 (570)
+++++++|.| .|++|.++++.|+..|.+-+.+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4678999998 6899999999999999754344
No 385
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.55 E-value=0.48 Score=49.06 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=29.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999996 799998744
No 386
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.55 E-value=1.9 Score=45.94 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=66.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.+|.|+|+|+=|+.+|..|++.| ..+++...+. ++ .+.|.+-+ .+.+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~---------------~~-----------~~~i~~~~--~N~~yLp- 51 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDE---------------EI-----------VAEINETR--ENPKYLP- 51 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCH---------------HH-----------HHHHHhcC--cCccccC-
Confidence 58999999999999999999999 5555533321 11 11222211 1111111
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHH--HhcCCeEEEeeeCCc
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC--ANTNKITITAALGFD 510 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~--~~~~kp~I~aalG~~ 510 (570)
.|..|.. -....++.+.++.+|+|+.++-+.-.|..+..+. ...+.++++++-|+.
T Consensus 52 ~i~lp~~----------l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 52 GILLPPN----------LKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred CccCCcc----------cccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 1111111 1123567778889999999999988888888773 345567888876663
No 387
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.48 E-value=1.8 Score=44.19 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=29.2
Q ss_pred hccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++.++|.|++ |+|.++|+.|+..|. ++.+++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecC
Confidence 567899999987 899999999999995 6777664
No 388
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.36 E-value=1.8 Score=42.62 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.0
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCe
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ 390 (570)
|++++++|.| .|++|.++|+.|+..|.+-
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~v 32 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARV 32 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeE
Confidence 5678899998 7899999999999999643
No 389
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.36 E-value=2.2 Score=46.87 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=30.7
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+.+++|+|+|.|+.|..+|+.|...|. ++++.|..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457899999999999999999999995 68888853
No 390
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=89.35 E-value=2.9 Score=43.40 Aligned_cols=90 Identities=21% Similarity=0.306 Sum_probs=61.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHccC---CeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV---~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
.|+.+||+|..|..++..|...|. .+|.+.|+. ..|. +.+.+.++.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~----------------------~e~~----~~l~~~~g~~-~-- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS----------------------EEKR----AALAAEYGVV-T-- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC----------------------HHHH----HHHHHHcCCc-c--
Confidence 479999999999999999999994 566664431 1122 1455555443 1
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHH-HhcCCeEEEee
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC-ANTNKITITAA 506 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~-~~~~kp~I~aa 506 (570)
. .+..+.+.+.|+||++.-.....-.+..+- ...++.+|..+
T Consensus 53 ~-----------------------~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISia 95 (266)
T COG0345 53 T-----------------------TDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIA 95 (266)
T ss_pred c-----------------------CcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEe
Confidence 1 223456678999999998866666666655 35577888763
No 391
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=89.34 E-value=2.2 Score=41.82 Aligned_cols=33 Identities=42% Similarity=0.657 Sum_probs=27.5
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEe
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLD 395 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD 395 (570)
+++++++|.| .|++|.++++.|+..|. .+++.+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~ 37 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHG 37 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEc
Confidence 5678999998 69999999999999995 565544
No 392
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.23 E-value=2 Score=43.95 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=29.5
Q ss_pred hccCeEEEEcC---chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa---GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++.++|.|+ +|+|.++|+.|+..|. ++.++|..
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecC
Confidence 56789999998 4999999999999996 67777653
No 393
>PRK12742 oxidoreductase; Provisional
Probab=89.12 E-value=1.9 Score=42.21 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=27.3
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEE
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlV 394 (570)
.+++++|+|.|+ |++|.++|+.|+..|.+ +.++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 366789999995 89999999999999974 5553
No 394
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.07 E-value=0.52 Score=49.80 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.3
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcc
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~V 399 (570)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999995 7999998754
No 395
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=89.06 E-value=4.8 Score=42.31 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.1
Q ss_pred CeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+|+|.|+ |-+|+.+++.|+..|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 37999996 999999999999874247777764
No 396
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=88.99 E-value=2.2 Score=42.73 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=39.8
Q ss_pred eEEEEc-CchHHHHHHHHHHH----ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 366 KCLLLG-AGTLGCQVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~----~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
.|+|.| .||+|.++|+.|+. .| -++.+++.+ ..+.+.+++.++...|..++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~r~----------------------~~~~~~~~~~l~~~~~~~~v~ 58 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSARN----------------------DEALRQLKAEIGAERSGLRVV 58 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEEcC----------------------HHHHHHHHHHHHhcCCCceEE
Confidence 477877 67999999999997 56 467775542 224555666676655666777
Q ss_pred EEeecc
Q 008323 441 GVVMAI 446 (570)
Q Consensus 441 ~~~~~I 446 (570)
.+..++
T Consensus 59 ~~~~Dl 64 (256)
T TIGR01500 59 RVSLDL 64 (256)
T ss_pred EEEecc
Confidence 776665
No 397
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.97 E-value=2.1 Score=49.26 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=61.0
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~ 443 (570)
+.+|+|+|.|-.|..+++.|...|+ +++++|.|.- +++.+ ++. +.. .+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~----------------------~v~~~----~~~--g~~--v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS----------------------AVNLM----RKY--GYK--VYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH----------------------HHHHH----HhC--CCe--EEE
Confidence 4689999999999999999999996 6888887531 22222 221 222 222
Q ss_pred eccCCCCCCCCCccccccccchHHHHH-hhccCCEEEEecCChHhhHHHHHHHHhcC
Q 008323 444 MAIPMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTN 499 (570)
Q Consensus 444 ~~Ipm~g~~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~e~R~l~~~~~~~~~ 499 (570)
.+. .+.+-+++ -++++|+|+.++|+.+.-..+...+++++
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 449 GDA----------------TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred eeC----------------CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 111 12344433 36799999999999888877888887764
No 398
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=88.92 E-value=1.7 Score=45.55 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=28.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++|||.|+ |.+|+++++.|+..|. +++++|..
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 45789999995 8999999999999996 57766653
No 399
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.92 E-value=1.7 Score=48.96 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.5
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+...||+|+|+|.+|...++.+.++|.. ++++|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 55678999999999999999999999975 777665
No 400
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=88.92 E-value=0.63 Score=47.89 Aligned_cols=34 Identities=32% Similarity=0.568 Sum_probs=31.1
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCccc
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVA 400 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs 400 (570)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~ 34 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIG 34 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTT
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeecccc
Confidence 48999999999999999999996 99999999554
No 401
>PRK05650 short chain dehydrogenase; Provisional
Probab=88.79 E-value=2.1 Score=43.06 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=24.9
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+|+|.| .|++|..+++.|+..|. +++++|.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 688988 58999999999999996 4666554
No 402
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=88.78 E-value=2.5 Score=41.45 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.1
Q ss_pred CeEEEEcC-chHHHHHHHHHHHccCCe
Q 008323 365 RKCLLLGA-GTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 365 ~kVlIlGa-GgLG~~VA~~La~~GV~~ 390 (570)
+.|+|.|+ |++|..+++.|+..|..-
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v 28 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTV 28 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46889985 899999999999999653
No 403
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=88.77 E-value=2.1 Score=42.17 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.2
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEE
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~Itl 393 (570)
++|+|.| .|++|..+|+.|+..|.. +.+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~-v~~ 31 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWS-VGI 31 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCE-EEE
Confidence 5789998 578999999999999965 444
No 404
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.75 E-value=0.57 Score=50.48 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
.+|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999994 799999876
No 405
>PRK06523 short chain dehydrogenase; Provisional
Probab=88.74 E-value=1.3 Score=44.17 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=49.2
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCC-cHHHHHHHHHHhhCCCcE
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKAMAAVKSLERIFPAVA 438 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk-~Kaeaaa~~L~~inP~v~ 438 (570)
++++++|+|.| .|++|.++++.|+..|. ++.+++.+.-. +......+-.-|+ .. ...+.+.+.+.+..+.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~id 79 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADL---TTAEGCAAVARAVLERLGGVD 79 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCC---CCHHHHHHHHHHHHHHcCCCC
Confidence 46789999999 58999999999999996 58888876432 2222222334455 33 234455556666555555
Q ss_pred EEEE
Q 008323 439 AEGV 442 (570)
Q Consensus 439 v~~~ 442 (570)
+-.+
T Consensus 80 ~vi~ 83 (260)
T PRK06523 80 ILVH 83 (260)
T ss_pred EEEE
Confidence 5444
No 406
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.72 E-value=1.9 Score=45.87 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.5
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
...||||+|||.+|-.....+-..|..+|.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 4789999999999999999999999999999875
No 407
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=88.71 E-value=1.3 Score=45.05 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=25.3
Q ss_pred eEEEEcC-chHHHHHHHHHHHccC-CeEEEEeC
Q 008323 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 366 kVlIlGa-GgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
+|+|.|+ |.+|.++++.|+..|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 9999999999999873 46777664
No 408
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.69 E-value=2 Score=49.64 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.5
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
..++|+|||+|..|-..|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 58999999999999999999999997 699988654
No 409
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=88.67 E-value=2.4 Score=51.25 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=35.0
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSN 403 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sN 403 (570)
-..+||+|||+|..|-+.|..|++.| -++|++|...++.-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G-h~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG-HNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC-CeEEEEccccccccc
Confidence 46889999999999999999999999 679999986654333
No 410
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.63 E-value=2 Score=46.58 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=27.8
Q ss_pred ccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCC
Q 008323 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 363 ~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+..+|+|+|+ |.+|..+++.|+..|. +++.++.+
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~ 93 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVARE 93 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEec
Confidence 4568999985 9999999999999995 57766653
No 411
>PLN02214 cinnamoyl-CoA reductase
Probab=88.61 E-value=2.3 Score=45.00 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.8
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++.++|+|.|+ |.+|+.+++.|+..|. +++.++.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 46778999996 9999999999999995 4555443
No 412
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.59 E-value=0.6 Score=48.89 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.7
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
..||+|||+|++|+.+|..|...| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 358999999999999999999999 6888877654
No 413
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.59 E-value=2.3 Score=41.91 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=24.7
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCe
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ 390 (570)
+++++|+|.| .|++|..+++.|+..|..-
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v 33 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLV 33 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 4578999998 5679999999999999753
No 414
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.51 E-value=2.3 Score=45.37 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.6
Q ss_pred CeEEEEcCchHHHHHHHHHHH
Q 008323 365 RKCLLLGAGTLGCQVARMLMA 385 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~ 385 (570)
.+|.|+|+|++|+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999887
No 415
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.50 E-value=3.8 Score=43.33 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=29.7
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3679999999999999999888999988888765
No 416
>PRK07832 short chain dehydrogenase; Provisional
Probab=88.49 E-value=2.1 Score=43.17 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=25.0
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++|.| .|++|.++++.|+..|. ++++++.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 688887 68999999999999996 4777653
No 417
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=88.49 E-value=5.5 Score=39.84 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=27.9
Q ss_pred hHhhhccCeEEEEcC-chHHHHHHHHHHHccCCeEEE
Q 008323 358 NLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 358 ~~~~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~Itl 393 (570)
+.+....++|+|+|+ |.+|..+++.|+..|. +++.
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~ 46 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGF-AVKA 46 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCC-EEEE
Confidence 345566789999995 9999999999999885 3444
No 418
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.48 E-value=2.1 Score=42.16 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.7
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++++|.| .|++|..+++.|+..|. ++++++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5799998 68999999999999997 78887764
No 419
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.44 E-value=2.5 Score=43.77 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=25.1
Q ss_pred ccCeEEEEc-CchHHHHHHHHHHHccCCeEEE
Q 008323 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (570)
Q Consensus 363 ~~~kVlIlG-aGgLG~~VA~~La~~GV~~Itl 393 (570)
.+++|+|.| .|.+|+.+++.|+..|.. +++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~ 34 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VKA 34 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEE
Confidence 367899998 699999999999999964 543
No 420
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.42 E-value=2.1 Score=48.72 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=31.3
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
-.+++|+|||+|.+|-..|..|.+.|. +++++|..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357899999999999999999999997 59999964
No 421
>PRK05442 malate dehydrogenase; Provisional
Probab=88.41 E-value=0.86 Score=48.50 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=29.1
Q ss_pred cCeEEEEcC-chHHHHHHHHHHHccC-C-----eEEEEeC
Q 008323 364 SRKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (570)
Q Consensus 364 ~~kVlIlGa-GgLG~~VA~~La~~GV-~-----~ItlVD~ 396 (570)
-.||.|+|+ |.+|+.+|-.|+..|+ + .|.|+|.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 359999998 9999999999998887 4 6999886
No 422
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=88.41 E-value=1.9 Score=45.26 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=27.2
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++|||.| .|.+|+.+++.|+..|...+.++|+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 4799998 5889999999999999776777664
No 423
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.40 E-value=1.8 Score=46.78 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=29.4
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
..+|+||| +|.+|..+|+.|...| ..++++|.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCC-CeEEEeCCC
Confidence 37899998 9999999999999999 568998874
No 424
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.40 E-value=2.6 Score=46.46 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
...++|+|||+|..|...|..|++.|. +++++|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 356899999999999999999999995 79999974
No 425
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.30 E-value=0.67 Score=48.32 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.||.|||+|.+|..+|..++..|..++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999997
No 426
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.24 E-value=2.1 Score=47.50 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=30.5
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.+++|+|||+|..|...|..|.+.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 578999999999999999999999974 8888864
No 427
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=88.16 E-value=1.3 Score=49.12 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred hHhhhccCeEEEEcCchHHHHHHHHHHHccCCeE
Q 008323 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKI 391 (570)
Q Consensus 358 ~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~I 391 (570)
+...|++++|+|||+|..|..-|.+|--.|+..+
T Consensus 30 ~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 30 GASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 4689999999999999999999999999998444
No 428
>CHL00194 ycf39 Ycf39; Provisional
Probab=88.12 E-value=4.4 Score=42.18 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=26.1
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
||+|.| .|-+|..+++.|+..|. +++.++.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcC
Confidence 799999 59999999999999995 57766653
No 429
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.10 E-value=0.61 Score=51.89 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=33.6
Q ss_pred HhhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 359 ~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+..+..+||+|+|+|+.|..+|+.|...|. .+++.|..
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 345667899999999999999999999998 89999964
No 430
>PRK06182 short chain dehydrogenase; Validated
Probab=88.08 E-value=2.1 Score=43.12 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=26.9
Q ss_pred ccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++++++|.|+ |++|.++|+.|+..|. ++.+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r 35 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAAR 35 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999995 8999999999999985 5666554
No 431
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.05 E-value=1.9 Score=44.87 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=27.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+|.+||+|.+|..+|++|+..|. .++++|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECC
Confidence 69999999999999999999995 57788764
No 432
>PRK08264 short chain dehydrogenase; Validated
Probab=88.02 E-value=0.75 Score=45.14 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=32.8
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+.+++++|+| .|++|..+|+.|++.|..++++++.+.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 5678999998 599999999999999987899998754
No 433
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.87 E-value=2.2 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.2
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++++++|.| .|++|..+++.|+..|. ++++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r 78 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL 78 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 577889999998 58899999999999995 5667654
No 434
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.86 E-value=0.7 Score=47.56 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.1
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.||.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 579999999999999999999996 88898864
No 435
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.76 E-value=2.8 Score=47.62 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=29.3
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+-+++|+|+|.+|..+|+.|...|. .++++|.|
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECC
Confidence 4799999999999999999999995 67888874
No 436
>PRK10537 voltage-gated potassium channel; Provisional
Probab=87.74 E-value=2.1 Score=46.71 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=58.9
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCc-EEE
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV-AAE 440 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v-~v~ 440 (570)
.++.+++|+|.|.+|.++++.|...|. .++++|.|.++ +.. . .+. -+.
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~------~~~---------------------~---~g~~vI~ 286 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE------HRL---------------------P---DDADLIP 286 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh------hhc---------------------c---CCCcEEE
Confidence 346789999999999999999998885 78888876321 000 0 011 122
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHH-hhccCCEEEEecCChHhhHHHHHHHHhcCC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTNK 500 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~e~R~l~~~~~~~~~k 500 (570)
+.. .+.+.+++ -+++++.|+.++++.+.-..+...++..+.
T Consensus 287 GD~-------------------td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 287 GDS-------------------SDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred eCC-------------------CCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 211 12344432 467899999999887777777777777663
No 437
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.73 E-value=2.7 Score=44.57 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=61.5
Q ss_pred hhhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcE
Q 008323 360 DILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (570)
Q Consensus 360 ~~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~ 438 (570)
..+..+.++|.| -.|+|-++|+.|++.| .++++.-. ...|++.+++.|++-.+..+
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R----------------------~~~~~~~~~~~i~~~~~~~~ 87 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRG-AHVVLACR----------------------NEERGEEAKEQIQKGKANQK 87 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeC----------------------CHHHHHHHHHHHHhcCCCCc
Confidence 456667888888 5699999999999999 88887332 23488899999998777788
Q ss_pred EEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEe
Q 008323 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481 (570)
Q Consensus 439 v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~ 481 (570)
+..+.+++ +...+.+.-.+.........|+.|+.
T Consensus 88 i~~~~lDL---------ssl~SV~~fa~~~~~~~~~ldvLInN 121 (314)
T KOG1208|consen 88 IRVIQLDL---------SSLKSVRKFAEEFKKKEGPLDVLINN 121 (314)
T ss_pred eEEEECCC---------CCHHHHHHHHHHHHhcCCCccEEEeC
Confidence 87777765 11222222223333334566777763
No 438
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.65 E-value=0.81 Score=47.37 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.3
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
-+||.|||+|..|..+|..|+..|. +++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999995 78888864
No 439
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=87.64 E-value=4 Score=39.11 Aligned_cols=60 Identities=32% Similarity=0.433 Sum_probs=42.4
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEee
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~~ 444 (570)
.++|+| .|++|-.+++.|+.-|.++|.++-... . +..+.+...+.|++. +.++..+..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~---~~~~~~~~i~~l~~~--g~~v~~~~~ 60 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------A---PSAEAEAAIRELESA--GARVEYVQC 60 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------G---GSTTHHHHHHHHHHT--T-EEEEEE-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------C---ccHHHHHHHHHHHhC--CCceeeecc
Confidence 467886 999999999999999999999965432 1 455666677777765 567777766
Q ss_pred cc
Q 008323 445 AI 446 (570)
Q Consensus 445 ~I 446 (570)
++
T Consensus 61 Dv 62 (181)
T PF08659_consen 61 DV 62 (181)
T ss_dssp -T
T ss_pred Cc
Confidence 55
No 440
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=87.60 E-value=0.85 Score=48.23 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=37.1
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLR 406 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~R 406 (570)
...+|+|||+|-+|+.+|..|++.|. +++++|.+.+...+-.|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence 46789999999999999999999998 99999998886544433
No 441
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.55 E-value=0.79 Score=47.53 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=28.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++|.|||+|..|+.+|+.|+..| -+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CeEEEEeCC
Confidence 57999999999999999999999 478888864
No 442
>PRK09135 pteridine reductase; Provisional
Probab=87.53 E-value=3.1 Score=40.73 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=27.0
Q ss_pred ccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 457899998 59999999999999996 5566554
No 443
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.46 E-value=2.7 Score=42.86 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=30.4
Q ss_pred hhhccCeEEEEcC---chHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGa---GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++.++|.|+ +|+|-++|+.|++.|. ++.+++.
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r 44 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQ 44 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcC
Confidence 4677889999998 5899999999999997 6777654
No 444
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.45 E-value=0.64 Score=48.54 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=32.1
Q ss_pred hhccCeEEEEcCch-HHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaGg-LG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++|+|+|+|+ +|..+|..|...|. ++|+.+.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 56889999999999 99999999999998 9999775
No 445
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=87.43 E-value=4.6 Score=45.48 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=64.4
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCc---HHHHHHHHHHhh-CCCcEEE
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF---KAMAAVKSLERI-FPAVAAE 440 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~---Kaeaaa~~L~~i-nP~v~v~ 440 (570)
.+|.+||+|..|..+|++|+..|. ++++.|.+.=....+... .... |.. -+...++..+.+ .|.+-+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 479999999999999999999995 677777642111100000 0000 110 112223333322 2444444
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC-hHhhHHHHHHHHhcCCeEEEe
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT-RESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs-~e~R~l~~~~~~~~~kp~I~a 505 (570)
.+.. .+.+..-.+.+...++.-|+||+++-+ .+.-......+.+.|+-++++
T Consensus 79 ~v~~-------------~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda 131 (493)
T PLN02350 79 LVKA-------------GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM 131 (493)
T ss_pred ECCC-------------cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC
Confidence 3321 011111113344445667899998765 343334466777889999987
No 446
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=87.43 E-value=2.4 Score=46.76 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=62.2
Q ss_pred eEEEEcCchHHH-HHHHHHHH----ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 008323 366 KCLLLGAGTLGC-QVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (570)
Q Consensus 366 kVlIlGaGgLG~-~VA~~La~----~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~ 440 (570)
||.|||+|+.-+ .+.+.|+. .++++|+|+|-|. ...+.+ =...+.+.+++..+.++++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~---------------v~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI---------------VGALAKRMVKKAGLPIKVH 64 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH---------------HHHHHHHHHHhhCCCeEEE
Confidence 899999999865 56666665 5679999999873 111100 1223344455556666665
Q ss_pred EEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec--CChHhhHHHHHHHHhcCC
Q 008323 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT--DTRESRWLPTLLCANTNK 500 (570)
Q Consensus 441 ~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t--Ds~e~R~l~~~~~~~~~k 500 (570)
.. .+.++.+.++|+||.+. ...+.|..-.++..++|+
T Consensus 65 ~t-----------------------~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi 103 (419)
T cd05296 65 LT-----------------------TDRREALEGADFVFTQIRVGGLEARALDERIPLKHGV 103 (419)
T ss_pred Ee-----------------------CCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence 44 34567778999999976 345567666677777765
No 447
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=87.40 E-value=1.6 Score=45.74 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=25.5
Q ss_pred EEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 369 LLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 369 IlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999998 57999886
No 448
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.38 E-value=3.3 Score=41.73 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=29.4
Q ss_pred hhccCeEEEEcCc---hHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGaG---gLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.++++.++|.|++ |+|.++|+.|+..|. ++.+++.
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r 42 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQ 42 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeC
Confidence 4677889999986 799999999999996 5777665
No 449
>PLN00198 anthocyanidin reductase; Provisional
Probab=87.36 E-value=3.4 Score=43.18 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=28.1
Q ss_pred hccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++.++|+|.| +|.+|+.+++.|+..|. ++++++.+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3467899998 88899999999999985 56655443
No 450
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=87.31 E-value=0.8 Score=51.21 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=30.8
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+++++++|+|+|++|..++..|+..|+ +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 567899999999999999999999998 8888765
No 451
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=87.24 E-value=1.3 Score=48.08 Aligned_cols=96 Identities=19% Similarity=0.331 Sum_probs=58.9
Q ss_pred ccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 008323 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (570)
Q Consensus 363 ~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~ 441 (570)
...||+|+|+ |.+|.++.+.|..--.-+|+++-... .. |+. +...+|.+....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~---------------sa---G~~--------i~~~~~~l~~~~ 90 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR---------------KA---GQS--------FGSVFPHLITQD 90 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh---------------hc---CCC--------chhhCccccCcc
Confidence 3459999996 89999999999988666777754321 11 221 112223221110
Q ss_pred EeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 442 ~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
. .++ .+.+. .+ ++++|+||.|+.+..++.+...+ ..++.+|+.
T Consensus 91 ~-~~~----------------~~~~~-~~-~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDl 133 (381)
T PLN02968 91 L-PNL----------------VAVKD-AD-FSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDL 133 (381)
T ss_pred c-cce----------------ecCCH-HH-hcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEc
Confidence 0 000 01111 12 37899999999998888777776 367889985
No 452
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=87.02 E-value=2.4 Score=43.43 Aligned_cols=31 Identities=32% Similarity=0.572 Sum_probs=27.0
Q ss_pred eEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 366 kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 689998 59999999999999994 78888864
No 453
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.88 E-value=2.9 Score=45.30 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.3
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
+.+.+|+|||. |-+|..+|+.|-...-.+|+-+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 46789999999 999999999999754456777876
No 454
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.86 E-value=0.27 Score=57.66 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=29.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++|.|||+|+.|+.||..++..| -.++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC-CeEEEEeCCH
Confidence 58999999999999999999999 5899999753
No 455
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=86.85 E-value=0.9 Score=47.79 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=30.0
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.||.|||+|.+|+.+|-.|+..|..+++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999997
No 456
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.82 E-value=3.3 Score=40.98 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=26.2
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
++.++|.| .|++|..+++.|+..|. ++.++|.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r 34 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDR 34 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEec
Confidence 35688887 69999999999999996 5666664
No 457
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.82 E-value=0.82 Score=49.94 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=31.6
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcc
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~V 399 (570)
.+...+||+|||+|-.|..+|+.|..-+ -.||+||+..-
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~~-~~ItlI~~~~~ 44 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDPKK-YNITVISPRNH 44 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCcCC-CeEEEEcCCCC
Confidence 3556789999999999999999996544 36999997553
No 458
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=86.82 E-value=3.1 Score=41.09 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=30.3
Q ss_pred hccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+++++++|.|+ |++|..+++.|+..|. +++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 56789999985 7899999999999995 677777765
No 459
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=86.79 E-value=2.5 Score=46.55 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=24.0
Q ss_pred CeEEEEcCchHHHHHHH--HHH---HccCCeEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVAR--MLM---AWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~--~La---~~GV~~ItlVD~d 397 (570)
.||.|||+|+.|...+- .++ .....+|+|+|.+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did 38 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDID 38 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCC
Confidence 37999999999998655 454 2233589999864
No 460
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.75 E-value=4.8 Score=43.15 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=59.2
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEEe
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~~ 443 (570)
..+|+|+|+||||....+....+| .+++.+|. +..|.+.|.+.-... -+..-
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~~lGAd~----~i~~~- 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAKKLGADH----VINSS- 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHHHhCCcE----EEEcC-
Confidence 679999999999999888888899 77777665 455665554432321 22211
Q ss_pred eccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 444 ~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
+.+..+..-+.+|+|+++.- ..+--..-.+.+..|+.++-+
T Consensus 219 --------------------~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 219 --------------------DSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred --------------------CchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence 11222222223999999988 555555556666667655544
No 461
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=86.70 E-value=3.1 Score=44.44 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=27.5
Q ss_pred hccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe--eeCC
Q 008323 472 ILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGF 509 (570)
Q Consensus 472 i~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a--alG~ 509 (570)
..+.|+||+|+.+....-+...+ .+.|+.+|+. +..+
T Consensus 66 ~~~vD~Vf~alP~~~~~~~v~~a-~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 66 LAGADVVFLALPHGVSMDLAPQL-LEAGVKVIDLSADFRL 104 (343)
T ss_pred hcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECCcccCC
Confidence 46799999999987666555554 4579999986 4555
No 462
>PRK09134 short chain dehydrogenase; Provisional
Probab=86.59 E-value=3.4 Score=41.24 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=25.0
Q ss_pred ccCeEEEEc-CchHHHHHHHHHHHccCCeEEEE
Q 008323 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKITLL 394 (570)
Q Consensus 363 ~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlV 394 (570)
.+++++|.| .|++|..+++.|++.|.. +.++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~-v~~~ 39 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFD-VAVH 39 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 456899998 679999999999999964 4443
No 463
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=86.58 E-value=2.5 Score=44.30 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.7
Q ss_pred eEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 366 kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
||+|.|+ |.+|+.+++.|+..|...+..+|.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~ 33 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDK 33 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecC
Confidence 6899984 999999999999998765665554
No 464
>PLN02740 Alcohol dehydrogenase-like
Probab=86.54 E-value=5.9 Score=42.41 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.3
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+|+|+|+|++|..++..+...|+++++.+|.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 4679999999999999999999999988888765
No 465
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=86.54 E-value=2.7 Score=46.94 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=64.6
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhh-CCCcEEEEEee
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~i-nP~v~v~~~~~ 444 (570)
.|.+||+|..|..+|++|+..|. ++++.|.+.-....+.... .... +-.-+...++..+.+ .|.+-+..+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~--~~g~----~~~~~~s~~e~v~~l~~~dvIil~v~- 72 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH--AKGK----KIVGAYSIEEFVQSLERPRKIMLMVK- 72 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc--cCCC----CceecCCHHHHHhhcCCCCEEEEECC-
Confidence 47899999999999999999996 6888877543222111110 0000 000111122222222 2444444332
Q ss_pred ccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC--hHhhHHHHHHHHhcCCeEEEe
Q 008323 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 445 ~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~l~~~~~~~~~kp~I~a 505 (570)
+|.+ +..-.+.+...+..-|+||+++-+ .+++... ..+...++-++++
T Consensus 73 ----~~~~--------v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~-~~l~~~gi~fvda 122 (467)
T TIGR00873 73 ----AGAP--------VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRY-KELKAKGILFVGS 122 (467)
T ss_pred ----CcHH--------HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHH-HHHHhcCCEEEcC
Confidence 1111 111224455556677999998753 4445554 4567788889987
No 466
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.50 E-value=0.9 Score=48.08 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=29.9
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcc
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~V 399 (570)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999995 6999998654
No 467
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=86.44 E-value=3.5 Score=43.22 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.5
Q ss_pred CeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 365 ~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
++|||.| +|.+|+++++.|+..|. +++.+|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 4789998 58899999999999996 67776653
No 468
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=86.42 E-value=3.8 Score=45.45 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=66.7
Q ss_pred eEEEEcCchHHH-HHHHHHHH----ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHH-HhhCCCcEE
Q 008323 366 KCLLLGAGTLGC-QVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSL-ERIFPAVAA 439 (570)
Q Consensus 366 kVlIlGaGgLG~-~VA~~La~----~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L-~~inP~v~v 439 (570)
||.|||+|+.=+ .+.+.|+. .++++|+|+|-|. .|. ..+..+++++ ++..+.+++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~------~rl-------------~~v~~l~~~~~~~~g~~~~v 62 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA------ERQ-------------EKVAEAVKILFKENYPEIKF 62 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH------HHH-------------HHHHHHHHHHHHhhCCCeEE
Confidence 799999998622 45555553 4579999999754 111 1133334444 444556666
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec--CChHhhHHHHHHHHhcCCeEEEe-eeCCce
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT--DTRESRWLPTLLCANTNKITITA-ALGFDS 511 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t--Ds~e~R~l~~~~~~~~~kp~I~a-alG~~g 511 (570)
+.. .+..+.++++|+||++. ...++|..=.++..+||+ +.. +.|..|
T Consensus 63 ~~T-----------------------tdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG 112 (437)
T cd05298 63 VYT-----------------------TDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGG 112 (437)
T ss_pred EEE-----------------------CCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHH
Confidence 544 34567789999999975 566888888899999996 432 455555
No 469
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=86.41 E-value=4.4 Score=43.34 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=58.6
Q ss_pred cCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
.+.+.|||+|..+-.-++.+.. .++++|.+.|. ...+++..+.++++..+. .+..
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r----------------------~~~~~e~~a~~l~~~~~~-~v~a- 185 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSR----------------------DPEAAEAFAARLRKRGGE-AVGA- 185 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcC----------------------CHHHHHHHHHHHHhhcCc-ccee-
Confidence 4589999999999998888764 46788888655 344788888888888765 2221
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChH
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (570)
.+..++.++++|+|+.||-+.+
T Consensus 186 ----------------------~~s~~~av~~aDiIvt~T~s~~ 207 (330)
T COG2423 186 ----------------------ADSAEEAVEGADIVVTATPSTE 207 (330)
T ss_pred ----------------------ccCHHHHhhcCCEEEEecCCCC
Confidence 2455778899999999998855
No 470
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.33 E-value=5.3 Score=42.51 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.2
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3578999999999999998888899988887664
No 471
>PLN02494 adenosylhomocysteinase
Probab=86.31 E-value=1 Score=50.22 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=32.7
Q ss_pred hhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 361 ~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
.+.+++|+|+|+|.+|..+|+.+...|+ +++++|.+.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3789999999999999999999999998 688887643
No 472
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=86.24 E-value=3.2 Score=42.48 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=53.5
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
.++++-++|-| .+|+|-++|+.|+..|. ++.++.. ...|-++++..+.+ .++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aR----------------------R~drL~~la~~~~~----~~~ 55 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGA-KVVLAAR----------------------REERLEALADEIGA----GAA 55 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEec----------------------cHHHHHHHHHhhcc----Cce
Confidence 34556678888 46899999999999997 5666333 23355666666654 445
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEec
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT 482 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t 482 (570)
....+++ + ..+....-.+.+.+-+...|++|+..
T Consensus 56 ~~~~~DV-------t--D~~~~~~~i~~~~~~~g~iDiLvNNA 89 (246)
T COG4221 56 LALALDV-------T--DRAAVEAAIEALPEEFGRIDILVNNA 89 (246)
T ss_pred EEEeecc-------C--CHHHHHHHHHHHHHhhCcccEEEecC
Confidence 5555555 1 11111222345566677889998753
No 473
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=86.21 E-value=1.9 Score=45.35 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=29.8
Q ss_pred hHhhhccCeEEEEcCchHHHHHHHHHHHccCC
Q 008323 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVR 389 (570)
Q Consensus 358 ~~~~L~~~kVlIlGaGgLG~~VA~~La~~GV~ 389 (570)
+++.|++++|.|||+|+=|-+=|.||--.|+.
T Consensus 12 ~l~~LkgK~iaIIGYGsQG~ahalNLRDSGln 43 (338)
T COG0059 12 DLDLLKGKKVAIIGYGSQGHAQALNLRDSGLN 43 (338)
T ss_pred ChhHhcCCeEEEEecChHHHHHHhhhhhcCCc
Confidence 45789999999999999999999999999987
No 474
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=86.20 E-value=3.7 Score=45.04 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=28.7
Q ss_pred hhccCeEEEEcC-chHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlGa-GgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+++++|+|.|+ |++|.++|+.|+..|. ++.++|.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r 210 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTS 210 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 456889999985 8999999999999996 5665553
No 475
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=86.06 E-value=2.2 Score=51.83 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=31.6
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
..++|+|||+|..|...|..|++.|. +++++|...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 57899999999999999999999995 799999653
No 476
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.05 E-value=0.99 Score=49.10 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=31.6
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..|++++|.|||+|.+|..+|+.|...|+ ++...|+
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46889999999999999999999999997 4556675
No 477
>PRK00811 spermidine synthase; Provisional
Probab=86.04 E-value=2.9 Score=43.39 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=25.4
Q ss_pred ccCeEEEEcCchHHHHHHHHHHH-ccCCeEEEEeCCc
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGR 398 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~-~GV~~ItlVD~d~ 398 (570)
..++||+||+|+ |.. ++.+++ .++.+|+.||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~-~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGT-LREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHH-HHHHHcCCCCCEEEEEeCCH
Confidence 467999999986 444 444445 4899999999865
No 478
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.94 E-value=0.34 Score=56.78 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.6
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
++|.|||+|+.|+.||..++..| -.++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 47999999999999999999999 4888989754
No 479
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=85.91 E-value=0.85 Score=46.90 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.9
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~V 399 (570)
.+|+|||+|-.|+..|..|++.|+. ++++|...-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999966 888887553
No 480
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.87 E-value=3.1 Score=46.33 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=30.7
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+++++|+|+|+|--|..+|+.|.+.|.. +++.|.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence 4678999999999999999999999955 77777643
No 481
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=85.78 E-value=5 Score=41.25 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.3
Q ss_pred CeEEEEcCchHHHHHHHHHHHc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAW 386 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~ 386 (570)
.||.|+|||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 3899999999999999999876
No 482
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.69 E-value=4 Score=42.58 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.5
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCe
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRK 390 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ 390 (570)
..+|+|+|+|.+|..+|+.|.+.|...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE
Confidence 468999999999999999999999655
No 483
>PRK15076 alpha-galactosidase; Provisional
Probab=85.60 E-value=3.6 Score=45.46 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=54.3
Q ss_pred CeEEEEcCchHHHHHHH--HHH-HccC--CeEEEEeCCcccccCCCcccCCCcccccCCCCcH-HHHH-HHHHHhhCCCc
Q 008323 365 RKCLLLGAGTLGCQVAR--MLM-AWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK-AMAA-VKSLERIFPAV 437 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~--~La-~~GV--~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~K-aeaa-a~~L~~inP~v 437 (570)
.||.|||+|++|...+- .++ ..+. ..|+|+|.+. .+.+ +.+. .+.+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~--------------------er~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP--------------------ERLEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH--------------------HHHHHHHHHHHHHHHhcCCCe
Confidence 48999999999866554 554 2223 4899999743 1112 2222 33333333445
Q ss_pred EEEEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC--hHhhH-HHHHHHHhcCCe
Q 008323 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRW-LPTLLCANTNKI 501 (570)
Q Consensus 438 ~v~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~-l~~~~~~~~~kp 501 (570)
+++.. .+..+.++++|+||.+.-. .+.++ .=-++..++|..
T Consensus 62 ~i~~t-----------------------tD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~ 105 (431)
T PRK15076 62 KITAT-----------------------TDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLR 105 (431)
T ss_pred EEEEE-----------------------CCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCe
Confidence 55432 2234556899999998765 34343 333566666664
No 484
>PRK06484 short chain dehydrogenase; Validated
Probab=85.56 E-value=3.1 Score=46.22 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=29.4
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
+++++.++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~ 38 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRN 38 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 34678899988 67899999999999995 67777653
No 485
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=85.52 E-value=4.4 Score=42.96 Aligned_cols=112 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
...+|+|||+|-.|.+.|..|++.|. +++++|.+..--.-+...... +..-.+.+...++++... .++..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~~~~--------~~~~~~~~~~~~~~l~~~-~i~~~ 86 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFGIPE--------FRIPIERVREGVKELEEA-GVVFH 86 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeecCcc--------cccCHHHHHHHHHHHHhC-CeEEe
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCC
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (570)
....-+-.+.................+.....+|.||++|.+
T Consensus 87 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs 128 (352)
T PRK12770 87 TRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT 128 (352)
T ss_pred cCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCC
No 486
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.46 E-value=3.3 Score=41.26 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=28.0
Q ss_pred hhccCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeC
Q 008323 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 361 ~L~~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+++++|.| .|++|.++|+.|+..|. ++.+++.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~ 39 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYN 39 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678999998 59999999999999996 4555443
No 487
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=85.41 E-value=3.5 Score=45.73 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v~~~ 442 (570)
..++|+|||+|..|...|..|++.|.. ++++|.. ..+.-+..+..... -.++.......-.-...++++..-
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~----~~~GG~l~~gip~~---~~~~~~~~~~~~~~~~~gv~~~~~ 213 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA----DRIGGLLRYGIPDF---KLEKEVIDRRIELMEAEGIEFRTN 213 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC----CCCCceeeecCCcc---cCCHHHHHHHHHHHHhCCcEEEeC
Q ss_pred eeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHH
Q 008323 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWL 490 (570)
Q Consensus 443 ~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l 490 (570)
. .....-...++...+|.||+++.+...+.+
T Consensus 214 ~-----------------~v~~~~~~~~~~~~~d~vvlAtGa~~~~~l 244 (471)
T PRK12810 214 V-----------------EVGKDITAEELLAEYDAVFLGTGAYKPRDL 244 (471)
T ss_pred C-----------------EECCcCCHHHHHhhCCEEEEecCCCCCCcC
No 488
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=85.30 E-value=1.1 Score=48.06 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=29.5
Q ss_pred eEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 366 kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
+|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999995 799999974
No 489
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=85.25 E-value=1.1 Score=47.59 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=30.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccCC-eEEEEeCC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDNG 397 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV~-~ItlVD~d 397 (570)
.||.|+|+|.+|+.+|..|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999965
No 490
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=85.14 E-value=4.8 Score=43.09 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 468 LTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 468 l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
.++++.+.|+||.||.....+... ..+.++|+++|..
T Consensus 72 ~~el~~~vDVVIdaT~~~~~~e~a-~~~~~aGk~VI~~ 108 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVGAKNK-ELYEKAGVKAIFQ 108 (341)
T ss_pred hhHhhccCCEEEECCCchhhHHHH-HHHHHCCCEEEEc
Confidence 345567899999999887666554 4666778988865
No 491
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=85.11 E-value=2.5 Score=45.23 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=25.5
Q ss_pred hccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 472 ILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 472 i~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
++++|+||+++.+..++.+...+ .+.|+.+|+-
T Consensus 64 ~~~vD~vFla~p~~~s~~~v~~~-~~~G~~VIDl 96 (336)
T PRK05671 64 FSQVQLAFFAAGAAVSRSFAEKA-RAAGCSVIDL 96 (336)
T ss_pred hcCCCEEEEcCCHHHHHHHHHHH-HHCCCeEEEC
Confidence 37899999999987676655554 5578999975
No 492
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.87 E-value=4.7 Score=47.59 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.2
Q ss_pred hccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 362 L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
-..++|+|||+|..|...|..|++.|. +++++|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357799999999999999999999995 69999863
No 493
>PRK08219 short chain dehydrogenase; Provisional
Probab=84.84 E-value=4.3 Score=39.23 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.6
Q ss_pred cCeEEEEc-CchHHHHHHHHHHHccCCeEEEEeCC
Q 008323 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (570)
Q Consensus 364 ~~kVlIlG-aGgLG~~VA~~La~~GV~~ItlVD~d 397 (570)
.++++|.| .|++|..+++.|+.. .+++++|..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~ 35 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT--HTLLLGGRP 35 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCC
Confidence 35799998 588999999999987 778887763
No 494
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.84 E-value=2.1 Score=37.17 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHhhccCCEEEEecCC--hHhhHHHHHHHHhcCCeEEEe
Q 008323 466 RRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 466 ~~l~~li~~~DvV~~~tDs--~e~R~l~~~~~~~~~kp~I~a 505 (570)
..++..+.+.|+||+.||. ..+.|.+-..|+++++|++.+
T Consensus 40 ~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 4578889999999999994 668999999999999999976
No 495
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.82 E-value=7.1 Score=40.59 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred ccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 363 ~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
.+.+|+|+|+|++|..++..+...|.++++.+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3789999999999999999999999987777654
No 496
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.80 E-value=1.1 Score=52.01 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.8
Q ss_pred cCeEEEEcCchHHHHHHHHHHHccCCeEEEEeCCc
Q 008323 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (570)
Q Consensus 364 ~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~d~ 398 (570)
...|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 3689999999999999999999996 699999874
No 497
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=84.78 E-value=1.4 Score=48.07 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=30.8
Q ss_pred CeEEEEcCchHHHHHHHHHHHccC-CeEEEEeCCcc
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRV 399 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~d~V 399 (570)
.||+|||+|..|-..|+.|.+.|- .+||++|....
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 379999999999999999999875 49999998654
No 498
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=84.73 E-value=2.8 Score=44.88 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=58.1
Q ss_pred ccCeEEEEcC-chHHHHHHHHHHH--ccCCeEEEEeCCcccccCCCcccCCCcccccCCCCcHHHHHHHHHHhhCCCcEE
Q 008323 363 SSRKCLLLGA-GTLGCQVARMLMA--WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (570)
Q Consensus 363 ~~~kVlIlGa-GgLG~~VA~~La~--~GV~~ItlVD~d~Vs~sNl~RQ~L~~~~Dv~~~Gk~Kaeaaa~~L~~inP~v~v 439 (570)
+..||.|||+ |-+|.++.+.|.. +-+.+|+++-.+. .. |++=. +.. -.+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~---------------sa---G~~~~------~~~--~~~~v 56 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEE---------------SA---GETLR------FGG--KSVTV 56 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccC---------------cC---CceEE------ECC--cceEE
Confidence 4568999996 8899999999999 6778888864421 12 33211 000 01122
Q ss_pred EEEeeccCCCCCCCCCccccccccchHHHHHhhccCCEEEEecCChHhhHHHHHHHHhcCCeEEEe
Q 008323 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (570)
Q Consensus 440 ~~~~~~Ipm~g~~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l~~~~~~~~~kp~I~a 505 (570)
+ . .+. ..++++|+||.|+....++.+...+ .+.|..+|+-
T Consensus 57 ~--~---------------------~~~--~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDl 96 (336)
T PRK08040 57 Q--D---------------------AAE--FDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDS 96 (336)
T ss_pred E--e---------------------Cch--hhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEEC
Confidence 2 0 111 1236899999999988776665555 4468999985
No 499
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=84.72 E-value=1 Score=43.06 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=30.8
Q ss_pred hhhccCeEEEEcCchHHHHHHHHHHHccCCeEEEEeC
Q 008323 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (570)
Q Consensus 360 ~~L~~~kVlIlGaGgLG~~VA~~La~~GV~~ItlVD~ 396 (570)
..+++++|+|||.|-.|..+|..|+..| .+++++=.
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R 198 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTR 198 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEES
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEec
Confidence 5688899999999999999999999999 99998644
No 500
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=84.66 E-value=3.8 Score=48.06 Aligned_cols=32 Identities=25% Similarity=0.569 Sum_probs=28.5
Q ss_pred CeEEEEcCchHHHHHHHHHHHccC-CeEEEEeC
Q 008323 365 RKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (570)
Q Consensus 365 ~kVlIlGaGgLG~~VA~~La~~GV-~~ItlVD~ 396 (570)
.+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 579999999999999999999995 46888776
Done!