BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008325
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/570 (60%), Positives = 430/570 (75%), Gaps = 6/570 (1%)
Query: 5 FPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGL 64
FP+EV+EHVF F+ KDRN+VSLVCKSWY+IER R+ VFIGNCYA+SP VI RFP +
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68
Query: 65 KSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRS 124
+S+ LKGKPHFADFNL+P WGG+VYPW+EA++ S LEE+RLKRMVV+DDCLEL+++S
Sbjct: 69 RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128
Query: 125 FVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVS 184
F NFK LVL SCEGF+TDGLAAIAA CR L+ELDL+E +VDD G W+S FPD+ TSLVS
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188
Query: 185 LNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYD 244
LN SCL E++ +ALERLV R PNLKSL+LNRAVPL+ L LL RAPQL +LG G + +
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248
Query: 245 PSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELI 304
+ Y L L CK +R LSGF + VP L A++ VC LT+LNLSYA + +L+
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLV 307
Query: 305 KLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGV----DNAAVTEEGLVAI 360
KL+ C KL+RLW+LD I D GL V+A TCK+L+ELRVFPS N A+TE+GLV++
Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367
Query: 361 SAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI 420
S GCPKL S+LYFC+QMTNAALIT+A+N N TRFRLCI++ + PD +T++PLD GFGAI
Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427
Query: 421 VQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLE 480
V+ CK TD+VF YIG YA+++EMLS+AFAG+SD GM +VL+GC LRKLE
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487
Query: 481 IRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFS 540
IRD PFG+ ALL + K ETMRSLWMSSC V+ G C+ L +KMP+LNVE+I+E + S
Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD-S 546
Query: 541 LDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570
+ V ++++YRT+ GPR D P FVW +
Sbjct: 547 RPESCPVERVFIYRTVAGPRFDMPGFVWNM 576
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 274 bits (700), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 183/581 (31%), Positives = 292/581 (50%), Gaps = 27/581 (4%)
Query: 7 DEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKS 66
D+VIE V ++T KDR++ SLVC+ W+KI+ +R+ V + CY +P+R+ RFP L+S
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 67 LTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFV 126
L LKGKP A FNL+P +WGG+V PWV ++ + L+ + +RM+VSD L+ L+++
Sbjct: 78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137
Query: 127 -NFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSL 185
+ ++L L C GFTTDGL +I +CR ++ L ++E + G+W+ TSL L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 186 NFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYD 244
NF + +I+ LE + +L S+++ L+ L A L + GS D
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED 256
Query: 245 PS-SEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNEL 303
E Y+ L C+ S G P + + P + L+L YA + +
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMG-----PNEMPILFPFAAQIRKLDLLYAL-LETEDH 310
Query: 304 IKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAA-------VTEEG 356
LI+ C LE L + IGDRGL V+A CK+L+ LR+ G D V++ G
Sbjct: 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI-ERGADEQGMEDEEGLVSQRG 369
Query: 357 LVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEG 416
L+A++ GC +L + + +TN +L ++ N FRL +LDRE + +T PLD G
Sbjct: 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE--ERITDLPLDNG 427
Query: 417 FGAIVQSCKXXXXXXXXXXX---TDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGC 473
+++ CK TD YIG Y+ + + + + G SD+G++ GC
Sbjct: 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487
Query: 474 KKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINE 533
L+KLE+R F A+ V K ++R LW+ ++ G + P N+E+I
Sbjct: 488 PNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547
Query: 534 ----DDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570
+ + + + + + Y +L G R D P V L
Sbjct: 548 RRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 94/230 (40%), Gaps = 20/230 (8%)
Query: 5 FPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKI---ERLSRQSVFIGNCYAISPERVIGRF 61
PDE++ +F + + VS VCK WY++ E L + G + P+ V GR
Sbjct: 12 LPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGK--NLHPD-VTGRL 67
Query: 62 PGLKSLTLK------GKP---HFADFNLLPYDWGGWV--YPWVEALAKSRVGLEELRLKR 110
+ + +P HF+ F + D V + + L+ L L+
Sbjct: 68 LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127
Query: 111 MVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQ 170
+ +SD + L+++ N L L C GF+ L + ++C L EL+L D
Sbjct: 128 LRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC-FDFTEKH 185
Query: 171 WISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPL 220
++ LN S + + + L LV R PNL L L+ +V L
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 103 LEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEI 162
L+ L L+ + +SD + L+++ N L L C GF+ L + ++C L EL+L
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Query: 163 EVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPL 220
D ++ LN S + + + L LV R PNL L L+ +V L
Sbjct: 141 -FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 197
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 439 QVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTA---LLTDV 495
+ L G E L + + + S VL + L +L++ +P G+ L +
Sbjct: 302 ESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKAL 361
Query: 496 GKYET-MRSLWMSSCEVTLGGCQTLA 520
+ +T +R LW+ C+VT GC +LA
Sbjct: 362 SQPDTVLRELWLGDCDVTNSGCSSLA 387
>pdb|2HW2|A Chain A, Crystal Structure Of Rifampin Adp-Ribosyl Transferase In
Complex With Rifampin
Length = 143
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 47 GNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWV----EALAKSRVG 102
G + + PE I P + L G P + P G + WV E LA R G
Sbjct: 70 GRIFIVEPEGAIEDDPNVTDKKLPGNPTRSYRTREPVWIVGELTDWVGHPPEQLAAMRQG 129
Query: 103 LEELRLKRMVVSDD 116
LEELR K + V D
Sbjct: 130 LEELRRKGLAVIYD 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,055,246
Number of Sequences: 62578
Number of extensions: 625716
Number of successful extensions: 1317
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 35
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)