Query 008325
Match_columns 570
No_of_seqs 317 out of 3229
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 22:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 9.9E-36 2.2E-40 269.6 17.1 377 4-534 74-462 (483)
2 KOG4341 F-box protein containi 99.9 4.2E-27 9.1E-32 213.9 10.2 325 52-509 127-462 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 7E-24 1.5E-28 184.4 12.2 197 3-218 99-324 (419)
4 PLN00113 leucine-rich repeat r 99.8 1.9E-20 4.1E-25 207.9 11.3 88 422-513 449-537 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.6E-20 3.5E-25 208.4 10.5 157 60-241 138-294 (968)
6 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-16 6.6E-21 151.8 20.8 99 425-523 193-302 (319)
7 cd00116 LRR_RI Leucine-rich re 99.7 9.3E-16 2E-20 148.4 22.5 113 388-510 191-318 (319)
8 KOG4194 Membrane glycoprotein 99.7 1.4E-18 3.1E-23 164.9 0.7 341 101-510 78-427 (873)
9 KOG1947 Leucine rich repeat pr 99.7 1.1E-15 2.4E-20 157.2 16.0 285 178-522 159-451 (482)
10 KOG4194 Membrane glycoprotein 99.6 3.1E-17 6.8E-22 156.0 1.9 344 98-483 99-448 (873)
11 KOG2120 SCF ubiquitin ligase, 99.6 2.3E-15 5E-20 131.7 7.0 202 285-529 185-392 (419)
12 KOG1947 Leucine rich repeat pr 99.6 1.1E-14 2.4E-19 149.7 12.4 277 101-492 161-446 (482)
13 KOG1909 Ran GTPase-activating 99.6 7E-14 1.5E-18 125.6 14.7 327 93-521 22-379 (382)
14 KOG1909 Ran GTPase-activating 99.6 5.7E-14 1.2E-18 126.2 13.3 202 277-528 112-329 (382)
15 PLN03210 Resistant to P. syrin 99.3 1.7E-11 3.6E-16 137.0 11.8 195 283-509 702-903 (1153)
16 KOG0444 Cytoskeletal regulator 99.3 1.2E-13 2.5E-18 133.1 -4.7 197 100-343 31-230 (1255)
17 KOG0444 Cytoskeletal regulator 99.2 6.9E-13 1.5E-17 128.0 -3.1 209 97-355 51-260 (1255)
18 PLN03210 Resistant to P. syrin 99.1 1.3E-10 2.9E-15 129.9 8.1 197 281-510 677-880 (1153)
19 KOG3207 Beta-tubulin folding c 99.1 2.3E-11 5E-16 112.7 0.2 191 279-487 140-339 (505)
20 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.4E-15 108.3 0.9 212 282-511 118-338 (505)
21 PF12937 F-box-like: F-box-lik 99.0 3.9E-10 8.4E-15 73.2 3.2 37 2-39 1-37 (47)
22 KOG0618 Serine/threonine phosp 99.0 8.2E-11 1.8E-15 119.1 -0.0 62 448-511 358-419 (1081)
23 KOG0618 Serine/threonine phosp 98.9 2.2E-10 4.7E-15 116.1 0.7 129 364-510 358-487 (1081)
24 PRK15387 E3 ubiquitin-protein 98.8 5.2E-09 1.1E-13 108.9 5.2 50 284-343 301-350 (788)
25 PRK15387 E3 ubiquitin-protein 98.7 2.4E-08 5.1E-13 104.1 8.6 30 286-321 323-352 (788)
26 COG5238 RNA1 Ran GTPase-activa 98.7 1.2E-07 2.7E-12 82.9 10.6 128 388-525 183-331 (388)
27 COG5238 RNA1 Ran GTPase-activa 98.6 5.1E-07 1.1E-11 79.1 12.4 99 91-190 21-130 (388)
28 KOG3665 ZYG-1-like serine/thre 98.6 1.6E-07 3.6E-12 97.5 10.0 149 365-527 122-278 (699)
29 PF00646 F-box: F-box domain; 98.5 3.6E-08 7.8E-13 64.5 1.1 37 2-39 3-39 (48)
30 smart00256 FBOX A Receptor for 98.5 2.7E-07 5.8E-12 58.1 4.3 34 5-39 1-34 (41)
31 KOG3665 ZYG-1-like serine/thre 98.4 8.9E-07 1.9E-11 92.1 9.9 158 285-457 122-283 (699)
32 PF14580 LRR_9: Leucine-rich r 98.4 1.1E-07 2.4E-12 80.6 0.8 124 388-527 17-143 (175)
33 KOG0472 Leucine-rich repeat pr 98.3 1.4E-07 3.1E-12 87.1 1.3 109 385-512 430-541 (565)
34 PRK15370 E3 ubiquitin-protein 98.3 5.4E-06 1.2E-10 87.3 12.3 152 335-521 283-437 (754)
35 PF14580 LRR_9: Leucine-rich r 98.3 1.2E-07 2.7E-12 80.3 -0.2 110 385-509 37-150 (175)
36 KOG1259 Nischarin, modulator o 98.2 3E-07 6.6E-12 81.6 0.3 106 388-511 305-411 (490)
37 KOG3864 Uncharacterized conser 98.2 1.8E-06 3.8E-11 72.6 4.5 103 427-531 103-211 (221)
38 KOG2982 Uncharacterized conser 98.2 4.3E-06 9.3E-11 74.5 6.8 109 103-217 47-156 (418)
39 KOG2982 Uncharacterized conser 98.1 2.6E-06 5.7E-11 75.8 4.6 68 420-488 194-263 (418)
40 KOG4237 Extracellular matrix p 97.9 3.3E-06 7.1E-11 78.2 1.6 93 416-511 265-358 (498)
41 KOG4237 Extracellular matrix p 97.9 8.2E-06 1.8E-10 75.7 3.0 68 446-515 271-338 (498)
42 KOG1859 Leucine-rich repeat pr 97.8 3E-06 6.5E-11 84.5 -0.6 105 388-511 185-291 (1096)
43 KOG4308 LRR-containing protein 97.7 3.6E-05 7.9E-10 76.8 5.1 332 154-523 89-456 (478)
44 PF13855 LRR_8: Leucine rich r 97.7 2.2E-06 4.7E-11 59.3 -2.7 61 449-511 1-61 (61)
45 PRK15370 E3 ubiquitin-protein 97.7 0.00011 2.4E-09 77.7 8.4 85 389-491 345-432 (754)
46 KOG4308 LRR-containing protein 97.7 2.8E-05 6.1E-10 77.6 3.4 44 287-331 89-136 (478)
47 KOG1259 Nischarin, modulator o 97.5 2.5E-05 5.3E-10 69.8 0.3 103 389-512 283-387 (490)
48 KOG3864 Uncharacterized conser 97.5 8.7E-05 1.9E-09 62.7 3.1 84 102-190 102-186 (221)
49 PF12799 LRR_4: Leucine Rich r 97.3 0.0002 4.3E-09 45.2 2.8 38 474-513 1-38 (44)
50 KOG4658 Apoptotic ATPase [Sign 97.2 0.00014 3.1E-09 78.1 2.0 61 333-401 715-781 (889)
51 KOG4658 Apoptotic ATPase [Sign 97.2 0.00025 5.3E-09 76.4 3.6 62 178-240 543-604 (889)
52 KOG1859 Leucine-rich repeat pr 97.1 0.0002 4.3E-09 72.1 1.9 84 421-512 183-267 (1096)
53 PF12799 LRR_4: Leucine Rich r 96.9 0.00094 2E-08 42.1 2.9 38 449-488 1-38 (44)
54 smart00367 LRR_CC Leucine-rich 96.4 0.0027 5.8E-08 34.8 2.1 23 498-520 1-24 (26)
55 KOG0617 Ras suppressor protein 96.3 0.00025 5.4E-09 58.1 -3.2 107 388-512 77-186 (264)
56 PF13516 LRR_6: Leucine Rich r 96.3 0.0031 6.8E-08 33.7 1.8 23 498-520 1-23 (24)
57 KOG2123 Uncharacterized conser 96.2 0.0018 3.9E-08 57.7 1.2 109 391-518 20-134 (388)
58 smart00367 LRR_CC Leucine-rich 96.2 0.0059 1.3E-07 33.4 2.6 21 449-469 2-23 (26)
59 PF13855 LRR_8: Leucine rich r 96.0 0.0019 4.1E-08 44.5 0.2 16 150-165 23-38 (61)
60 KOG2123 Uncharacterized conser 96.0 0.0012 2.6E-08 58.8 -1.0 98 424-527 18-120 (388)
61 PLN03215 ascorbic acid mannose 96.0 0.0063 1.4E-07 58.1 3.6 36 3-38 5-40 (373)
62 KOG2997 F-box protein FBX9 [Ge 96.0 0.006 1.3E-07 55.3 3.1 37 2-38 107-147 (366)
63 KOG0617 Ras suppressor protein 95.9 0.00012 2.6E-09 59.9 -7.1 15 151-165 55-69 (264)
64 KOG2739 Leucine-rich acidic nu 95.8 0.0034 7.4E-08 55.7 0.9 86 423-509 63-153 (260)
65 KOG0472 Leucine-rich repeat pr 95.6 0.0052 1.1E-07 57.8 1.3 115 91-218 425-539 (565)
66 PLN03150 hypothetical protein; 95.6 0.015 3.3E-07 61.2 4.8 64 422-487 439-503 (623)
67 KOG1644 U2-associated snRNP A' 95.5 0.037 8E-07 47.3 5.9 88 99-189 62-149 (233)
68 PF13516 LRR_6: Leucine Rich r 95.4 0.01 2.2E-07 31.7 1.6 21 449-469 2-22 (24)
69 KOG2739 Leucine-rich acidic nu 95.2 0.0081 1.8E-07 53.3 1.2 46 416-461 82-128 (260)
70 smart00368 LRR_RI Leucine rich 95.0 0.027 5.9E-07 31.3 2.6 25 499-523 2-26 (28)
71 PLN03150 hypothetical protein; 95.0 0.033 7.1E-07 58.8 5.0 82 128-218 420-501 (623)
72 KOG0281 Beta-TrCP (transducin 94.8 0.023 5E-07 52.0 3.1 36 2-38 75-114 (499)
73 KOG4579 Leucine-rich repeat (L 94.8 0.0092 2E-07 47.4 0.4 98 423-524 51-148 (177)
74 PF13013 F-box-like_2: F-box-l 94.4 0.052 1.1E-06 41.8 3.6 29 2-31 22-50 (109)
75 PRK15386 type III secretion pr 94.3 0.024 5.1E-07 55.0 1.9 14 283-296 50-63 (426)
76 smart00368 LRR_RI Leucine rich 93.4 0.099 2.1E-06 29.1 2.7 21 450-470 3-23 (28)
77 KOG1644 U2-associated snRNP A' 92.9 0.086 1.9E-06 45.1 2.7 87 421-509 60-150 (233)
78 KOG3763 mRNA export factor TAP 92.4 0.23 5E-06 49.3 5.3 85 442-527 211-304 (585)
79 COG4886 Leucine-rich repeat (L 91.9 0.063 1.4E-06 53.5 0.9 37 472-511 253-289 (394)
80 COG4886 Leucine-rich repeat (L 91.7 0.12 2.5E-06 51.6 2.6 34 308-343 252-285 (394)
81 KOG0531 Protein phosphatase 1, 90.7 0.053 1.1E-06 54.3 -1.0 36 474-510 162-197 (414)
82 KOG4579 Leucine-rich repeat (L 90.6 0.066 1.4E-06 42.7 -0.3 84 425-513 27-114 (177)
83 KOG3763 mRNA export factor TAP 90.1 0.49 1.1E-05 47.1 4.9 62 441-504 236-306 (585)
84 KOG0531 Protein phosphatase 1, 89.5 0.12 2.5E-06 51.9 0.3 82 423-513 93-176 (414)
85 KOG0274 Cdc4 and related F-box 89.0 0.17 3.6E-06 51.9 1.0 36 2-38 108-143 (537)
86 PRK15386 type III secretion pr 87.5 1.1 2.3E-05 43.9 5.3 12 61-72 51-62 (426)
87 PF13504 LRR_7: Leucine rich r 87.1 0.45 9.8E-06 22.8 1.4 10 501-510 3-12 (17)
88 PF00560 LRR_1: Leucine Rich R 78.9 1 2.3E-05 23.2 0.8 13 500-512 1-13 (22)
89 KOG0532 Leucine-rich repeat (L 75.8 1.1 2.4E-05 45.0 0.7 61 448-513 188-248 (722)
90 KOG3735 Tropomodulin and leiom 73.0 9.2 0.0002 35.9 5.8 85 415-499 188-280 (353)
91 PF07723 LRR_2: Leucine Rich R 65.8 4.6 9.9E-05 21.9 1.4 24 451-474 2-26 (26)
92 smart00365 LRR_SD22 Leucine-ri 63.9 5.1 0.00011 21.8 1.4 16 498-513 1-16 (26)
93 KOG3735 Tropomodulin and leiom 63.0 20 0.00043 33.8 5.8 85 379-472 187-278 (353)
94 PF08004 DUF1699: Protein of u 62.7 15 0.00032 28.8 4.1 69 474-568 17-88 (131)
95 smart00369 LRR_TYP Leucine-ric 62.1 5.6 0.00012 21.3 1.4 16 498-513 1-16 (26)
96 smart00370 LRR Leucine-rich re 62.1 5.6 0.00012 21.3 1.4 16 498-513 1-16 (26)
97 KOG0532 Leucine-rich repeat (L 59.0 4 8.6E-05 41.2 0.7 60 449-510 211-271 (722)
98 KOG3926 F-box proteins [Amino 50.3 23 0.00049 32.1 3.8 35 2-36 202-236 (332)
99 PF03382 DUF285: Mycoplasma pr 36.1 32 0.00069 27.3 2.5 35 446-482 58-93 (120)
100 smart00364 LRR_BAC Leucine-ric 29.9 33 0.00071 18.7 1.0 13 475-487 3-15 (26)
101 PF13306 LRR_5: Leucine rich r 26.0 13 0.00029 29.7 -1.4 60 421-483 31-90 (129)
102 PF07735 FBA_2: F-box associat 24.1 2.5E+02 0.0053 19.3 5.5 14 455-468 38-51 (70)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=9.9e-36 Score=269.61 Aligned_cols=377 Identities=24% Similarity=0.361 Sum_probs=274.3
Q ss_pred CCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh--cccceEEeccccccchHHHHhhCCCCceeeeCCCCCcccCCCC
Q 008325 4 YFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER--LSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLL 81 (570)
Q Consensus 4 ~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~~ 81 (570)
.||+|++..||++|+ .+.+.+++++|+.|+..+. ..|.++++...... ..
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD----------------v~----------- 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD----------------VD----------- 125 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhc----------------CC-----------
Confidence 599999999999999 8999999999999999863 45555544332110 00
Q ss_pred CCCCCCCcchHHHHHHhhC-CCCCEEEeCCC-ccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEec
Q 008325 82 PYDWGGWVYPWVEALAKSR-VGLEELRLKRM-VVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDL 159 (570)
Q Consensus 82 ~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l 159 (570)
.+++..+..+| ..|++|.++++ .+.+..+..+...||+++.|.+.+|..+++..+..+.+.|++|++|++
T Consensus 126 --------g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L 197 (483)
T KOG4341|consen 126 --------GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL 197 (483)
T ss_pred --------CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh
Confidence 01123333333 35666666666 566666666666666666666666666666666666666666666665
Q ss_pred cccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCc
Q 008325 160 QEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIG 239 (570)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~ 239 (570)
..|. .+++..+..+...|++|++|+++.|+.
T Consensus 198 ~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~q-------------------- 228 (483)
T KOG4341|consen 198 HSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQ-------------------- 228 (483)
T ss_pred cccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCch--------------------
Confidence 5542 223333334444444444444444431
Q ss_pred ccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEec
Q 008325 240 SFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWIL 319 (570)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~ 319 (570)
+..+++..+..++..++.+.+.||.....+.+
T Consensus 229 --------------------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l---------------- 260 (483)
T KOG4341|consen 229 --------------------------------ISGNGVQALQRGCKELEKLSLKGCLELELEAL---------------- 260 (483)
T ss_pred --------------------------------hhcCcchHHhccchhhhhhhhcccccccHHHH----------------
Confidence 11122333334444444444445554444333
Q ss_pred cccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeee
Q 008325 320 DSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLC 398 (570)
Q Consensus 320 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 398 (570)
.....+++.+.++++. +|+.++|.++..+...|..|+.| ..+|..+++..+.++.+++++|+.|.+.
T Consensus 261 --------~~~~~~~~~i~~lnl~----~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~ 328 (483)
T KOG4341|consen 261 --------LKAAAYCLEILKLNLQ----HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS 328 (483)
T ss_pred --------HHHhccChHhhccchh----hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc
Confidence 3344466777788877 78899999988888889999999 8999999999999999999999999998
Q ss_pred eecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC--cccHHHHHHHHhcccccceeecccCC-CChHHHHHHHhc---
Q 008325 399 ILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG--LLTDQVFLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNG--- 472 (570)
Q Consensus 399 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~--~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~--- 472 (570)
.|. .++ +.++..+..+++.|+.+++-+ .++|..+..++.+|+.|+.|.+++|. |||+|+.++...
T Consensus 329 ~c~-----~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 329 GCQ-----QFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred ccc-----hhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 775 677 889999999999999999977 77888899999999999999999998 799999888553
Q ss_pred CccCceEEecCCCCChHHHHHHHhccccccEEEeecc-cCChhHHHHHHhhCCceEEEEeecC
Q 008325 473 CKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSC-EVTLGGCQTLAKKMPRLNVEIINED 534 (570)
Q Consensus 473 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~p~~~~~~~~~~ 534 (570)
...|+.+.+.+|+.+.+...+.+..|++|+.+++.+| +++.+++..++.++|..+|+.+.-.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 5789999999997777676788999999999999999 5999999999999999999877543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=4.2e-27 Score=213.86 Aligned_cols=325 Identities=22% Similarity=0.312 Sum_probs=243.0
Q ss_pred cchHHHHhhCC-CCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCC-ccCHHHHHHHHhhCCCcc
Q 008325 52 ISPERVIGRFP-GLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRM-VVSDDCLELLSRSFVNFK 129 (570)
Q Consensus 52 ~~~~~l~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~ 129 (570)
.+.+.+.+++. .++.+.++|+..+.+.. +..+...||++++|++.+| .+++..+..++++|++|+
T Consensus 127 ~VV~~~~~Rcgg~lk~LSlrG~r~v~~ss-------------lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~ 193 (483)
T KOG4341|consen 127 GVVENMISRCGGFLKELSLRGCRAVGDSS-------------LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR 193 (483)
T ss_pred cceehHhhhhccccccccccccccCCcch-------------hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh
Confidence 33455666665 49999999987765544 4778889999999999999 899999999999999999
Q ss_pred EEEecCCCCCChHHHHHHHHhCCCCCEEeccccc-cccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCC
Q 008325 130 SLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIE-VDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPN 208 (570)
Q Consensus 130 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 208 (570)
.|.+..|..+++..+..+...|++|+.|+++.|. +.. .++..+...+.+
T Consensus 194 ~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~------------------------------~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 194 HLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG------------------------------NGVQALQRGCKE 243 (483)
T ss_pred hhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc------------------------------CcchHHhccchh
Confidence 9999999999999999999999999999999984 322 223333333444
Q ss_pred CceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCC
Q 008325 209 LKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLT 288 (570)
Q Consensus 209 L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~ 288 (570)
++.+...+|. ....+.+..+...++.+.
T Consensus 244 l~~~~~kGC~----------------------------------------------------e~~le~l~~~~~~~~~i~ 271 (483)
T KOG4341|consen 244 LEKLSLKGCL----------------------------------------------------ELELEALLKAAAYCLEIL 271 (483)
T ss_pred hhhhhhcccc----------------------------------------------------cccHHHHHHHhccChHhh
Confidence 4444444443 333444455555666777
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCCEEEeccc--cchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChh
Q 008325 289 SLNLSYAPGIHGNELIKLIRFCRKLERLWILDS--IGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPK 366 (570)
Q Consensus 289 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~ 366 (570)
.+++..|..++|+++..+..+|..|+.|..+++ .++..+..+..++++|+.|.++ +|..+++.++..+...|+.
T Consensus 272 ~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~----~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 272 KLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS----GCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred ccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc----ccchhhhhhhhhhhcCChh
Confidence 778888888888888888777888888877764 5666777777888888888888 6778888888888877777
Q ss_pred hHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCCcccHHHHHHHH
Q 008325 367 LHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIG 445 (570)
Q Consensus 367 L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~ 445 (570)
|+.+ ...|..+++..+..++.+|+.|+.+.+++|. .+ +|+++..+.
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce-----~i----------------------------tD~gi~~l~ 394 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE-----LI----------------------------TDEGIRHLS 394 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhh-----hh----------------------------hhhhhhhhh
Confidence 7777 6666666666666666666666666555443 34 444444443
Q ss_pred h---cccccceeecccCC-CChHHHHHHHhcCccCceEEecCC-CCChHHHHHHHhccccccEEEeecc
Q 008325 446 M---YAEQLEMLSIAFAG-NSDKGMLYVLNGCKKLRKLEIRDS-PFGNTALLTDVGKYETMRSLWMSSC 509 (570)
Q Consensus 446 ~---~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (570)
. ....|+.+++.+|+ +++..++.+ ..|++|+.+++.+| .++..++..+..++|+++...+..=
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence 2 35678889999998 577777777 78999999999999 7888888889999999887766554
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7e-24 Score=184.36 Aligned_cols=197 Identities=25% Similarity=0.395 Sum_probs=116.4
Q ss_pred CCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhcc--cceEEeccccccch---HHHHhhC----------------
Q 008325 3 NYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLS--RQSVFIGNCYAISP---ERVIGRF---------------- 61 (570)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~--~~~l~~~~~~~~~~---~~l~~~~---------------- 61 (570)
++|||||+..||+.|+ .+++++++.|||||+.++... |..+++..-. ..| .++.++-
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~-i~p~~l~~l~~rgV~v~Rlar~~~~~prl 176 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRN-IHPDVLGRLLSRGVIVFRLARSFMDQPRL 176 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCc-cChhHHHHHHhCCeEEEEcchhhhcCchh
Confidence 5799999999999999 999999999999999997633 3333332211 111 1222211
Q ss_pred --------CCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEe
Q 008325 62 --------PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVL 133 (570)
Q Consensus 62 --------~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l 133 (570)
.++++++++.. ......+..+++.|..|+.|.+.+..+.|.....++++ .+|++|++
T Consensus 177 ae~~~~frsRlq~lDLS~s--------------~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnl 241 (419)
T KOG2120|consen 177 AEHFSPFRSRLQHLDLSNS--------------VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNL 241 (419)
T ss_pred hhhhhhhhhhhHHhhcchh--------------heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeecc
Confidence 11333333311 01123345566666777777777777776666666654 66777777
Q ss_pred cCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceee
Q 008325 134 VSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLR 213 (570)
Q Consensus 134 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 213 (570)
+.|.+++..++.-+..+|+.|.+|+++.|....+....+ .....++|+.|+++++........+..+..+||+|.+|+
T Consensus 242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 777777766666666667777777777664333321111 112234566666665544444455555556666666666
Q ss_pred cCCCC
Q 008325 214 LNRAV 218 (570)
Q Consensus 214 l~~~~ 218 (570)
++.|.
T Consensus 320 LSD~v 324 (419)
T KOG2120|consen 320 LSDSV 324 (419)
T ss_pred ccccc
Confidence 65554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.9e-20 Score=207.95 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=55.5
Q ss_pred hcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccc
Q 008325 422 QSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYET 500 (570)
Q Consensus 422 ~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 500 (570)
..+++|+.|++++ .+....-. ....++|+.|++++|.++......+ ..+++|+.|++++|.+..... ..+..+++
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~--~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~ 524 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIP-DELSSCKK 524 (968)
T ss_pred ccCCCCcEEECcCceeeeecCc--ccccccceEEECcCCccCCccChhh-hhhhccCEEECcCCcceeeCC-hHHcCccC
Confidence 3456666666665 22211000 0123578888888888743322223 457889999999997664322 34578899
Q ss_pred ccEEEeecccCCh
Q 008325 501 MRSLWMSSCEVTL 513 (570)
Q Consensus 501 L~~L~l~~~~i~~ 513 (570)
|+.|+|++|+++.
T Consensus 525 L~~L~Ls~N~l~~ 537 (968)
T PLN00113 525 LVSLDLSHNQLSG 537 (968)
T ss_pred CCEEECCCCcccc
Confidence 9999999998764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.6e-20 Score=208.43 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=76.4
Q ss_pred hCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCC
Q 008325 60 RFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGF 139 (570)
Q Consensus 60 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 139 (570)
.+++|+.|+++++... +.+| .....+++|++|++++|.+.......+. .+++|++|++.++. +
T Consensus 138 ~l~~L~~L~Ls~n~~~---~~~p------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~-l 200 (968)
T PLN00113 138 SIPNLETLDLSNNMLS---GEIP------------NDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQ-L 200 (968)
T ss_pred ccCCCCEEECcCCccc---ccCC------------hHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCC-C
Confidence 4677899988865431 1111 1123456777777777654433333333 45667777776553 2
Q ss_pred ChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCC
Q 008325 140 TTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVP 219 (570)
Q Consensus 140 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 219 (570)
+.... .....+++|++|++++|.+....+..+. .+++|++|+++++. ... .+......+++|+.|+++++.-
T Consensus 201 ~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 201 VGQIP-RELGQMKSLKWIYLGYNNLSGEIPYEIG----GLTSLNHLDLVYNN--LTG-PIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred cCcCC-hHHcCcCCccEEECcCCccCCcCChhHh----cCCCCCEEECcCce--ecc-ccChhHhCCCCCCEEECcCCee
Confidence 22111 1223566666666666655433322222 23466666665441 110 1112233455566666555532
Q ss_pred chhHHHHHhhCCCceeecCccc
Q 008325 220 LDTLQKLLMRAPQLVDLGIGSF 241 (570)
Q Consensus 220 ~~~l~~~~~~~~~L~~L~l~~~ 241 (570)
...++..+..+++|+.|++..+
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred eccCchhHhhccCcCEEECcCC
Confidence 2223334444555555555443
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=3.1e-16 Score=151.78 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=58.1
Q ss_pred ccCcEEecCC-cccHHHHHHHH---hcccccceeecccCCCChHHHHHHHhcC----ccCceEEecCCCCChHHHH---H
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIG---MYAEQLEMLSIAFAGNSDKGMLYVLNGC----KKLRKLEIRDSPFGNTALL---T 493 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~---~ 493 (570)
++|+.|++++ .+++.+...+. ..+++|++|++++|.+++.++..++..+ +.|++|++++|.+++.+.. .
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 4566666655 44444443332 2355677777777666666666655543 5677777777766654432 3
Q ss_pred HHhccccccEEEeecccCChhHHHHHHhhC
Q 008325 494 DVGKYETMRSLWMSSCEVTLGGCQTLAKKM 523 (570)
Q Consensus 494 ~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 523 (570)
.+..+++|+.+++++|.+++++...+.+..
T Consensus 273 ~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 273 VLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred HHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 344455677777777777766666555444
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=9.3e-16 Score=148.39 Aligned_cols=113 Identities=25% Similarity=0.273 Sum_probs=78.1
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhH---HHHHhcCccCcEEecCC-cccHHHHHHHHhcc----cccceeecccC
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGF---GAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYA----EQLEMLSIAFA 459 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~----~~L~~L~l~~~ 459 (570)
.+++|+.|+++++ .++ +.+. ...+..+++|++|++++ .+++.++..++..+ +.|++|++.+|
T Consensus 191 ~~~~L~~L~L~~n------~i~----~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 191 ANCNLEVLDLNNN------GLT----DEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred hCCCCCEEeccCC------ccC----hHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 3467777777766 344 3332 33445667888888887 67777777766553 68999999999
Q ss_pred CCChHHHHHHHhc---CccCceEEecCCCCChHHHHH---HHhcc-ccccEEEeeccc
Q 008325 460 GNSDKGMLYVLNG---CKKLRKLEIRDSPFGNTALLT---DVGKY-ETMRSLWMSSCE 510 (570)
Q Consensus 460 ~i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~---~~~~~-~~L~~L~l~~~~ 510 (570)
.+++.+...+... +++|+++++++|.+++.+... .+... +.|+.|++.+++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 9877766655444 567999999999888775332 33444 688888887764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.4e-18 Score=164.94 Aligned_cols=341 Identities=17% Similarity=0.158 Sum_probs=174.7
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
+.-+.|+++++.+.+.++..+. .+++|+++.+..+. ...+..+.....+|+.|++.+|.|.....+.+..++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~---- 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP---- 149 (873)
T ss_pred cceeeeeccccccccCcHHHHh-cCCcceeeeeccch---hhhcccccccccceeEEeeeccccccccHHHHHhHh----
Confidence 3445688888877776666555 56888888877552 223444444556788888888776666555555544
Q ss_pred cccEEEeccc-cCCCCHHHHHHHHHhCCCCceeecCCCCCchhHH-HHHhhCCCceeecCcccccCCChHHHHHHHHHHh
Q 008325 181 SLVSLNFSCL-KGEINLTALERLVARSPNLKSLRLNRAVPLDTLQ-KLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLV 258 (570)
Q Consensus 181 ~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (570)
.|++|+|+.. .+.+.... ...-+++++|+++++. +..+. .-+..+.+|..|.++.
T Consensus 150 alrslDLSrN~is~i~~~s----fp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr------------------ 206 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPS----FPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR------------------ 206 (873)
T ss_pred hhhhhhhhhchhhcccCCC----CCCCCCceEEeecccc-ccccccccccccchheeeeccc------------------
Confidence 7777777743 11111111 1223467777777653 11110 1111222333333222
Q ss_pred hcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecccc---chhhHHHHHhcCC
Q 008325 259 KCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSI---GDRGLGVVAFTCK 335 (570)
Q Consensus 259 ~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~ 335 (570)
+.++.- ....++.+++|+.|+|.... +....... ++++++|+.|.+..+. -++|. +..|.
T Consensus 207 -----------NrittL-p~r~Fk~L~~L~~LdLnrN~-irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~---Fy~l~ 269 (873)
T KOG4194|consen 207 -----------NRITTL-PQRSFKRLPKLESLDLNRNR-IRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGA---FYGLE 269 (873)
T ss_pred -----------Cccccc-CHHHhhhcchhhhhhccccc-eeeehhhh-hcCchhhhhhhhhhcCcccccCcc---eeeec
Confidence 111111 11233456677777776544 33221112 3566777777776541 12221 12466
Q ss_pred CCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchh
Q 008325 336 ELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDE 415 (570)
Q Consensus 336 ~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~ 415 (570)
++++|+++ .+.+....--.+. ++..|+.|....+.|.......+. .|++|+.|+|+++. ++... +.
T Consensus 270 kme~l~L~-----~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~------i~~l~-~~ 335 (873)
T KOG4194|consen 270 KMEHLNLE-----TNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNR------ITRLD-EG 335 (873)
T ss_pred ccceeecc-----cchhhhhhccccc-ccchhhhhccchhhhheeecchhh-hcccceeEeccccc------cccCC-hh
Confidence 77777777 3333332211111 255666663333333333333333 67788888887763 33211 11
Q ss_pred hHHHHHhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCCC----ChHHHHHHHhcCccCceEEecCCCCChHHH
Q 008325 416 GFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGN----SDKGMLYVLNGCKKLRKLEIRDSPFGNTAL 491 (570)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i----~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 491 (570)
. +..+.+|+.|+|+++--+.-.+.-.....+|+.|+|.+|.+ .| +.. ...++++|++|.+.+|++....-
T Consensus 336 s----f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~-~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 336 S----FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAV-AFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred H----HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chh-hhccchhhhheeecCceeeecch
Confidence 1 23345677777766211111122223456777777777764 33 222 23557777777777775443332
Q ss_pred HHHHhccccccEEEeeccc
Q 008325 492 LTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 492 ~~~~~~~~~L~~L~l~~~~ 510 (570)
..+..+++|++|+|-+|.
T Consensus 410 -rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 410 -RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred -hhhccCcccceecCCCCc
Confidence 244567777777777774
No 9
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=157.20 Aligned_cols=285 Identities=27% Similarity=0.360 Sum_probs=188.5
Q ss_pred CCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchh--HHHHHhhCCCceeecCcccccCCChHHHHHHHH
Q 008325 178 SCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDT--LQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKA 255 (570)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 255 (570)
....++.+.+..+...........+...+++|+.|.+.+|..+.. +..+...++.|++|+++.+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------- 227 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL----------- 227 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc-----------
Confidence 445677777776655667777777787789999999999877665 6788888888888887652100
Q ss_pred HHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc--cchhhHHHHHhc
Q 008325 256 TLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS--IGDRGLGVVAFT 333 (570)
Q Consensus 256 ~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~ 333 (570)
..........+...+++|+.|++++|..+++.++..++..|++|+.|.+.++ +++.++..+...
T Consensus 228 --------------~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 228 --------------ITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred --------------cccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 0111112233556778888888888887888888888888888888887665 478888888888
Q ss_pred CCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCc
Q 008325 334 CKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQP 412 (570)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~ 412 (570)
|++|++|+++ +|..+++.++..+...|++|+.| ...+.. |+.++.+.+..+. ....
T Consensus 294 ~~~L~~L~l~----~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~-----~~~~-- 350 (482)
T KOG1947|consen 294 CPSLRELDLS----GCHGLTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLL-----TLTS-- 350 (482)
T ss_pred cCcccEEeee----cCccchHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhh-----ccCc--
Confidence 8888888888 78888888888877778888777 443332 3334444333222 1110
Q ss_pred chhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCC-CCChHH
Q 008325 413 LDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDS-PFGNTA 490 (570)
Q Consensus 413 ~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~ 490 (570)
+.........|++++.+.+.. .+++.+...+...||.| + .++......+.+++.|+++.| ..++..
T Consensus 351 -d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l----------~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 351 -DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL----------T-ESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred -hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc----------c-hHHHHHhccCCccceEecccCccccccc
Confidence 133344566777777777765 33444443333333333 4 444444444555888888888 577776
Q ss_pred HHHHHhccccccEEEeecc-cCChhHHHHHHhh
Q 008325 491 LLTDVGKYETMRSLWMSSC-EVTLGGCQTLAKK 522 (570)
Q Consensus 491 ~~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~ 522 (570)
+......+.+++.+++++| .++..++..+...
T Consensus 419 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 419 LRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred hHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 6544444788888888888 4676666655443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=3.1e-17 Score=156.01 Aligned_cols=344 Identities=16% Similarity=0.083 Sum_probs=181.2
Q ss_pred hhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccC
Q 008325 98 KSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPD 177 (570)
Q Consensus 98 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 177 (570)
...++|+++.+..+.++. +..+.....+|+.|.|..+ .++...-.++. ..|.|++||++.|.+.......+..
T Consensus 99 ~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~--- 171 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPA--- 171 (873)
T ss_pred hcCCcceeeeeccchhhh--cccccccccceeEEeeecc-ccccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCC---
Confidence 355788888888775443 1222223456888888755 34333333332 4677888888887665444332222
Q ss_pred CCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchh-HHHHHhhCCCceeecCcccccCCChHHHHHHHHH
Q 008325 178 SCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDT-LQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKAT 256 (570)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 256 (570)
-.++++|+|.+. .++.-....+ ..+.+|..|+++++. +.. ....+.++|+|+.|++....-.. --...
T Consensus 172 -~~ni~~L~La~N--~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iri------ve~lt 240 (873)
T KOG4194|consen 172 -KVNIKKLNLASN--RITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRI------VEGLT 240 (873)
T ss_pred -CCCceEEeeccc--cccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceee------ehhhh
Confidence 237888888755 2222211111 223477777777765 333 34456667888777765432111 00223
Q ss_pred HhhcCCccccc----CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHh
Q 008325 257 LVKCKSIRSLS----GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAF 332 (570)
Q Consensus 257 ~~~~~~L~~L~----~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 332 (570)
|..+++|+.|+ +...+.+. .+-++.++++|+|.... +....-..+ -++..|+.|+++.+.-...-..-..
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG----~Fy~l~kme~l~L~~N~-l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDG----AFYGLEKMEHLNLETNR-LQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCc----ceeeecccceeecccch-hhhhhcccc-cccchhhhhccchhhhheeecchhh
Confidence 55666666665 22222222 23467799999998766 554333333 5678999999988622221111223
Q ss_pred cCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCc
Q 008325 333 TCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQP 412 (570)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~ 412 (570)
.|++|++|+++ .+.++.-.-..+.- +..|+.|....+.++.-.-. .+..+.+|++|+|+.+... |.
T Consensus 315 ftqkL~~LdLs-----~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~-af~~lssL~~LdLr~N~ls-------~~ 380 (873)
T KOG4194|consen 315 FTQKLKELDLS-----SNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEG-AFVGLSSLHKLDLRSNELS-------WC 380 (873)
T ss_pred hcccceeEecc-----ccccccCChhHHHH-HHHhhhhcccccchHHHHhh-HHHHhhhhhhhcCcCCeEE-------EE
Confidence 57899999999 55555433222221 45566664444444322211 1225567777777766431 22
Q ss_pred chhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecC
Q 008325 413 LDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRD 483 (570)
Q Consensus 413 ~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 483 (570)
++++ ...+.++++|++|.+.| .+..-.-.+ ...++.|++|+|.+|.|......++ ... +|++|.+..
T Consensus 381 IEDa-a~~f~gl~~LrkL~l~gNqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAF-e~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 381 IEDA-AVAFNGLPSLRKLRLTGNQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAF-EPM-ELKELVMNS 448 (873)
T ss_pred Eecc-hhhhccchhhhheeecCceeeecchhh-hccCcccceecCCCCcceeeccccc-ccc-hhhhhhhcc
Confidence 2222 23345577777777766 222111111 1335677777777776522222222 112 455555543
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.3e-15 Score=131.73 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=142.1
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHH-HHHhcCCCCceeecccCCCCCCCcCHHHHHHHHcc
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLG-VVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAG 363 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~ 363 (570)
+.|++|+++... ++...+..++..|.+|+.|.+.+..-++.+. .+++ -.+|+.|+++ .|.+++..++..
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnls----m~sG~t~n~~~l---- 254 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLS----MCSGFTENALQL---- 254 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccc----cccccchhHHHH----
Confidence 368888888776 8888888888888888888888764444433 4443 3678888888 566666555544
Q ss_pred ChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC---cccHHH
Q 008325 364 CPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG---LLTDQV 440 (570)
Q Consensus 364 ~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~---~i~~~~ 440 (570)
+...|..|.+|++++|. ..+ +..-..+..--++|+.|+|+| .+.+..
T Consensus 255 ---------------------l~~scs~L~~LNlsWc~-----l~~----~~Vtv~V~hise~l~~LNlsG~rrnl~~sh 304 (419)
T KOG2120|consen 255 ---------------------LLSSCSRLDELNLSWCF-----LFT----EKVTVAVAHISETLTQLNLSGYRRNLQKSH 304 (419)
T ss_pred ---------------------HHHhhhhHhhcCchHhh-----ccc----hhhhHHHhhhchhhhhhhhhhhHhhhhhhH
Confidence 44456666666666653 111 221122223346777788877 556667
Q ss_pred HHHHHhcccccceeecccCC-CChHHHHHHHhcCccCceEEecCC-CCChHHHHHHHhccccccEEEeecccCChhHHHH
Q 008325 441 FLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNGCKKLRKLEIRDS-PFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQT 518 (570)
Q Consensus 441 ~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 518 (570)
+..++..||+|.+|+++.|. +++..+..+ -.++.|++|.++.| .+.+..+ -.+...|.|.+|++.|| +++...+-
T Consensus 305 ~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~-vsdt~mel 381 (419)
T KOG2120|consen 305 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGC-VSDTTMEL 381 (419)
T ss_pred HHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHe-eeeccCcceEEEEeccc-cCchHHHH
Confidence 77788888999999998887 577555555 56889999999999 5665554 35678999999999999 88878888
Q ss_pred HHhhCCceEEE
Q 008325 519 LAKKMPRLNVE 529 (570)
Q Consensus 519 l~~~~p~~~~~ 529 (570)
+.+.+|+++++
T Consensus 382 ~~e~~~~lkin 392 (419)
T KOG2120|consen 382 LKEMLSHLKIN 392 (419)
T ss_pred HHHhCcccccc
Confidence 88999987764
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=149.70 Aligned_cols=277 Identities=26% Similarity=0.373 Sum_probs=174.7
Q ss_pred CCCCEEEeCCC--ccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccc-ccccccccccccccC
Q 008325 101 VGLEELRLKRM--VVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEI-EVDDNRGQWISCFPD 177 (570)
Q Consensus 101 ~~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 177 (570)
..++.+++..+ .........+...+++|+.|.+.+|..+++.++..+...+++|++|+++++ ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------ 228 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLI------------ 228 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccc------------
Confidence 44444444433 344444444444456666666666666665555555556666666666553 100
Q ss_pred CCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHH
Q 008325 178 SCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATL 257 (570)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 257 (570)
.........+...+++|+.|+++.+.
T Consensus 229 ---------------~~~~~~~~~~~~~~~~L~~l~l~~~~--------------------------------------- 254 (482)
T KOG1947|consen 229 ---------------TLSPLLLLLLLSICRKLKSLDLSGCG--------------------------------------- 254 (482)
T ss_pred ---------------ccchhHhhhhhhhcCCcCccchhhhh---------------------------------------
Confidence 11111222244556677777776543
Q ss_pred hhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc--cchhhHHHHHhcCC
Q 008325 258 VKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS--IGDRGLGVVAFTCK 335 (570)
Q Consensus 258 ~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~ 335 (570)
.+++.++..++..|++|++|.+.+|..+++.++..++..|++|++|++.++ .++.++..+..+|+
T Consensus 255 -------------~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 255 -------------LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred -------------ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 134455566666677777777777776777777777777777888877775 34666777777788
Q ss_pred CCceeecccCCCCCCCcCHHHHHHHHccChhhHHH-HHhcccCC-hHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcc
Q 008325 336 ELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSL-LYFCQQMT-NAALITVAKNNSNFTRFRLCILDREKPDPVTMQPL 413 (570)
Q Consensus 336 ~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L-l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~ 413 (570)
+|+.|.+. .... |+.++.+ +..+.... +.........|++++.+.+.++ .++
T Consensus 322 ~l~~l~~~----~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~------~~~---- 375 (482)
T KOG1947|consen 322 NLRELKLL----SLNG------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC------GIS---- 375 (482)
T ss_pred chhhhhhh----hcCC------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh------hcc----
Confidence 88887776 2222 6666666 56565555 4666667778888888888766 344
Q ss_pred hhhHHHHHhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCC-CChHHHHHHHhcCccCceEEecCC-CCChHHH
Q 008325 414 DEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNGCKKLRKLEIRDS-PFGNTAL 491 (570)
Q Consensus 414 ~~~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~ 491 (570)
+.+...++.+|+.|. . .+.........++.|+++.|. .++..+......|.+++.+++.+| .++....
T Consensus 376 ~~~~~~~l~gc~~l~-~---------~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 376 DLGLELSLRGCPNLT-E---------SLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CcchHHHhcCCcccc-h---------HHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 555566777888772 2 222233333448999999998 588888888666888999999999 5555554
Q ss_pred H
Q 008325 492 L 492 (570)
Q Consensus 492 ~ 492 (570)
.
T Consensus 446 ~ 446 (482)
T KOG1947|consen 446 E 446 (482)
T ss_pred h
Confidence 3
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.57 E-value=7e-14 Score=125.58 Aligned_cols=327 Identities=18% Similarity=0.179 Sum_probs=177.5
Q ss_pred HHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCC---ccEEEecCCC--CCChHH------HHHHHHhCCCCCEEeccc
Q 008325 93 VEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVN---FKSLVLVSCE--GFTTDG------LAAIAANCRYLRELDLQE 161 (570)
Q Consensus 93 l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~---L~~L~l~~~~--~~~~~~------l~~l~~~~~~L~~L~l~~ 161 (570)
+.........+++++|+++++.......+++.+.+ |+..++++.- ...+.. +...+..||+|+.|+|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34555567899999999999999988888766554 5555554321 111111 112224678888888888
Q ss_pred cccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCccc
Q 008325 162 IEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSF 241 (570)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 241 (570)
|.++..+...+..+...+.+|++|.|.+| .+...+-..+.. .|..|..
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~--Glg~~ag~~l~~---al~~l~~--------------------------- 149 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNC--GLGPEAGGRLGR---ALFELAV--------------------------- 149 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcC--CCChhHHHHHHH---HHHHHHH---------------------------
Confidence 88777766666666655666666666655 344333322222 1111110
Q ss_pred ccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChH---HHHHHHhcCCCCCEEEe
Q 008325 242 VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN---ELIKLIRFCRKLERLWI 318 (570)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~l~~l~~~~~~L~~L~l 318 (570)
......-+.|+++....+. +.+. .+...++.+|.|+.+.+
T Consensus 150 ------------------------------------~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~ 192 (382)
T KOG1909|consen 150 ------------------------------------NKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRL 192 (382)
T ss_pred ------------------------------------HhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEE
Confidence 0011223355555554433 3322 23344445555555555
Q ss_pred ccc-cchhhHH---HHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCce
Q 008325 319 LDS-IGDRGLG---VVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTR 394 (570)
Q Consensus 319 ~~~-~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~ 394 (570)
..+ +...+.. .-..+|++|+.|++. .+.++..+-..++. ....+|+|+.
T Consensus 193 ~qN~I~~eG~~al~eal~~~~~LevLdl~-----DNtft~egs~~Lak----------------------aL~s~~~L~E 245 (382)
T KOG1909|consen 193 SQNGIRPEGVTALAEALEHCPHLEVLDLR-----DNTFTLEGSVALAK----------------------ALSSWPHLRE 245 (382)
T ss_pred ecccccCchhHHHHHHHHhCCcceeeecc-----cchhhhHHHHHHHH----------------------Hhcccchhee
Confidence 543 3333332 223467888888887 44555555444333 1224567777
Q ss_pred eeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHh---cccccceeecccCCC--ChHHHHH
Q 008325 395 FRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGM---YAEQLEMLSIAFAGN--SDKGMLY 468 (570)
Q Consensus 395 L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~---~~~~L~~L~l~~~~i--~~~~~~~ 468 (570)
+++++| .+.+.....-+.++-...|+|+.|.+.+ .|+.++...++. .-|.|+.|+|++|.+ .++++..
T Consensus 246 l~l~dc------ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~e 319 (382)
T KOG1909|consen 246 LNLGDC------LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDE 319 (382)
T ss_pred eccccc------ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHH
Confidence 777777 4552221222333444567777777776 666666555442 256777777777776 6667776
Q ss_pred HHhcC----ccCceEEecCCCCChHH---HHHHHhccccccEEEeecccCChhHHHHHHh
Q 008325 469 VLNGC----KKLRKLEIRDSPFGNTA---LLTDVGKYETMRSLWMSSCEVTLGGCQTLAK 521 (570)
Q Consensus 469 l~~~~----~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 521 (570)
++... ..+...+-+.+.+.+.+ ..........=+.++.-++.+.+++++.+.+
T Consensus 320 i~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~e 379 (382)
T KOG1909|consen 320 IASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEELKE 379 (382)
T ss_pred HHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHhhh
Confidence 66655 22333344444333333 2223334445556666666677777666654
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=5.7e-14 Score=126.16 Aligned_cols=202 Identities=17% Similarity=0.195 Sum_probs=134.9
Q ss_pred HHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHH
Q 008325 277 LSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEG 356 (570)
Q Consensus 277 l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~ 356 (570)
+..+...+.+|++|++.+|. +...+-..+...+. .|. .......-++|+.+... .+.+.+.+
T Consensus 112 l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~---~l~---------~~kk~~~~~~Lrv~i~~-----rNrlen~g 173 (382)
T KOG1909|consen 112 LEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALF---ELA---------VNKKAASKPKLRVFICG-----RNRLENGG 173 (382)
T ss_pred HHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHH---HHH---------HHhccCCCcceEEEEee-----cccccccc
Confidence 34445566777777787777 66555444322111 110 11112234567777776 55555554
Q ss_pred HHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhH---HHHHhcCccCcEEecC
Q 008325 357 LVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGF---GAIVQSCKRLRRLSLS 433 (570)
Q Consensus 357 l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~L~~L~l~ 433 (570)
... +....+.+|.|+.+++..+ .|. ..++ ..-+..||.|+.|+|.
T Consensus 174 a~~----------------------~A~~~~~~~~leevr~~qN------~I~----~eG~~al~eal~~~~~LevLdl~ 221 (382)
T KOG1909|consen 174 ATA----------------------LAEAFQSHPTLEEVRLSQN------GIR----PEGVTALAEALEHCPHLEVLDLR 221 (382)
T ss_pred HHH----------------------HHHHHHhccccceEEEecc------ccc----CchhHHHHHHHHhCCcceeeecc
Confidence 433 3344556788888888776 444 4444 3345788999999998
Q ss_pred C-cccHHHHHHHHh---cccccceeecccCCCChHHHHHHHhc----CccCceEEecCCCCChHHHH---HHHhcccccc
Q 008325 434 G-LLTDQVFLYIGM---YAEQLEMLSIAFAGNSDKGMLYVLNG----CKKLRKLEIRDSPFGNTALL---TDVGKYETMR 502 (570)
Q Consensus 434 ~-~i~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~ 502 (570)
+ .++..+-..++. .++.|+.|++++|.+.+.|..++... .|+|+.|++.+|.++.++.. ..+...|.|+
T Consensus 222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 7 667777666664 36689999999999877776665543 78999999999988876633 3345688999
Q ss_pred EEEeecccC--ChhHHHHHHhhCCceEE
Q 008325 503 SLWMSSCEV--TLGGCQTLAKKMPRLNV 528 (570)
Q Consensus 503 ~L~l~~~~i--~~~~~~~l~~~~p~~~~ 528 (570)
.|+|++|.+ .++++..++..++...+
T Consensus 302 kLnLngN~l~e~de~i~ei~~~~~~~~~ 329 (382)
T KOG1909|consen 302 KLNLNGNRLGEKDEGIDEIASKFDTAHV 329 (382)
T ss_pred HhcCCcccccccchhHHHHHHhcccccc
Confidence 999999988 88899999888865443
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.28 E-value=1.7e-11 Score=137.04 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=106.8
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCC--cCH--HHHH
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAA--VTE--EGLV 358 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--l~~--~~l~ 358 (570)
.+++|+.|++++|..+.. +....++|+.|++.++... .++... .+++|++|.+. ++.. +.. ..+.
T Consensus 702 ~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~----~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILC----EMKSEKLWERVQPLT 770 (1153)
T ss_pred CCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCccc-cccccc-ccccccccccc----ccchhhccccccccc
Confidence 456788888888864321 1122457788887765211 111111 35677777776 2110 000 0000
Q ss_pred -HHHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCCcc
Q 008325 359 -AISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLL 436 (570)
Q Consensus 359 -~l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~i 436 (570)
.....+++|+.| +.++..+..- ...+ ..+++|+.|++++|. .+...+. + ..+++|+.|+++++-
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~l-P~si-~~L~~L~~L~Ls~C~-----~L~~LP~--~-----~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVEL-PSSI-QNLHKLEHLEIENCI-----NLETLPT--G-----INLESLESLDLSGCS 836 (1153)
T ss_pred hhhhhccccchheeCCCCCCcccc-Chhh-hCCCCCCEEECCCCC-----CcCeeCC--C-----CCccccCEEECCCCC
Confidence 011225677888 6555443321 1122 367888888887764 3332111 1 146788888888731
Q ss_pred cHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCC-CCChHHHHHHHhccccccEEEeecc
Q 008325 437 TDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDS-PFGNTALLTDVGKYETMRSLWMSSC 509 (570)
Q Consensus 437 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (570)
. +..+....++|+.|+++++.++.. +.-...+++|+.|++++| .+.... .....+++|+.+++++|
T Consensus 837 ~---L~~~p~~~~nL~~L~Ls~n~i~~i--P~si~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 837 R---LRTFPDISTNISDLNLSRTGIEEV--PWWIEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDC 903 (1153)
T ss_pred c---cccccccccccCEeECCCCCCccC--hHHHhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCC
Confidence 1 111222345788888888887532 222356788888888888 444322 23456778888888888
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.27 E-value=1.2e-13 Score=133.14 Aligned_cols=197 Identities=16% Similarity=0.159 Sum_probs=97.1
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccccc-ccccccCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQ-WISCFPDS 178 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~~ 178 (570)
++.++-|.|....+.. ....++ .+.+|+.|.+..+.-+ .+..-+..+|.|+++.+..|.+...+.. .+. .
T Consensus 31 Mt~~~WLkLnrt~L~~-vPeEL~-~lqkLEHLs~~HN~L~---~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF----~ 101 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQ-VPEELS-RLQKLEHLSMAHNQLI---SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF----R 101 (1255)
T ss_pred hhheeEEEechhhhhh-ChHHHH-HHhhhhhhhhhhhhhH---hhhhhhccchhhHHHhhhccccccCCCCchhc----c
Confidence 3567777777653321 112233 4567888887755311 1222223678888888888765544321 122 2
Q ss_pred CCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhH-HHHHhhCCCceeecCcccccCCChHHHHHHHHHH
Q 008325 179 CTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTL-QKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATL 257 (570)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 257 (570)
+..|+.|+|+.. .......-....+++-.|+++++. +..+ ..++.++..|-.|+++...
T Consensus 102 l~dLt~lDLShN----qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr--------------- 161 (1255)
T KOG0444|consen 102 LKDLTILDLSHN----QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR--------------- 161 (1255)
T ss_pred cccceeeecchh----hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch---------------
Confidence 337777777733 222233333445677778887664 2222 2233333333333332211
Q ss_pred hhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc-cchhhHHHHHhcCCC
Q 008325 258 VKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS-IGDRGLGVVAFTCKE 336 (570)
Q Consensus 258 ~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 336 (570)
|.. ++.-...+.+|++|++++.+ +....+.++ ....+|+.|++++. .+...++.-...+.+
T Consensus 162 -----Le~-----------LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 162 -----LEM-----------LPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred -----hhh-----------cCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 000 11112344578888888887 655555443 23334455555553 111112212223456
Q ss_pred Cceeecc
Q 008325 337 LQELRVF 343 (570)
Q Consensus 337 L~~L~l~ 343 (570)
|..++++
T Consensus 224 L~dvDlS 230 (1255)
T KOG0444|consen 224 LRDVDLS 230 (1255)
T ss_pred hhhcccc
Confidence 7777777
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.21 E-value=6.9e-13 Score=127.96 Aligned_cols=209 Identities=16% Similarity=0.140 Sum_probs=116.6
Q ss_pred HhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccccccccccc
Q 008325 97 AKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFP 176 (570)
Q Consensus 97 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 176 (570)
+.++.+|++|.+.++.+.... ..++ .+|.|+++.+..+ .+...++..-.-++..|+.|++++|.+.+.. . -.
T Consensus 51 L~~lqkLEHLs~~HN~L~~vh-GELs-~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP-~----~L 122 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISVH-GELS-DLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVP-T----NL 122 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhhh-hhhc-cchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcc-h----hh
Confidence 446788899988887554322 1233 4577888877655 3444444332237888999999998754332 1 12
Q ss_pred CCCCcccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHH
Q 008325 177 DSCTSLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKA 255 (570)
Q Consensus 177 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 255 (570)
.+.+++-.|+|++.. ..+.. .+..++.-|-.|+++++. +..++..+..+..|+.|.++....
T Consensus 123 E~AKn~iVLNLS~N~IetIPn----~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL------------ 185 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPN----SLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL------------ 185 (1255)
T ss_pred hhhcCcEEEEcccCccccCCc----hHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh------------
Confidence 344578888888552 11111 233334456677887654 556666666666777665543210
Q ss_pred HHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCC
Q 008325 256 TLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCK 335 (570)
Q Consensus 256 ~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 335 (570)
....+.. .+.+.+|+.|.+++.. -+-..+..-+..+.+|..++++.+.-...-..+ -..+
T Consensus 186 -----------------~hfQLrQ-LPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl-y~l~ 245 (1255)
T KOG0444|consen 186 -----------------NHFQLRQ-LPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL-YKLR 245 (1255)
T ss_pred -----------------hHHHHhc-Cccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchHHH-hhhh
Confidence 0000010 1344567777777665 222222223345577888888776332222222 2567
Q ss_pred CCceeecccCCCCCCCcCHH
Q 008325 336 ELQELRVFPSGVDNAAVTEE 355 (570)
Q Consensus 336 ~L~~L~l~~~~~~~~~l~~~ 355 (570)
+|+.|+++ .+.++.-
T Consensus 246 ~LrrLNLS-----~N~iteL 260 (1255)
T KOG0444|consen 246 NLRRLNLS-----GNKITEL 260 (1255)
T ss_pred hhheeccC-----cCceeee
Confidence 88999998 4555543
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.10 E-value=1.3e-10 Score=129.91 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=119.1
Q ss_pred hhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHH
Q 008325 281 HPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAI 360 (570)
Q Consensus 281 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l 360 (570)
...+++|+.|++++|..+...... .++++|+.|++.+|.....+. ...++|+.|+++ .+.+..-. ..
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p---~~~~nL~~L~L~-----~n~i~~lP--~~ 743 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFP---DISTNISWLDLD-----ETAIEEFP--SN 743 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCccccc---cccCCcCeeecC-----CCcccccc--cc
Confidence 346678999999988755432211 157889999998874433322 234678999998 33333211 10
Q ss_pred HccChhhHHH-HHhccc--CChH--H-HHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC
Q 008325 361 SAGCPKLHSL-LYFCQQ--MTNA--A-LITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG 434 (570)
Q Consensus 361 ~~~~~~L~~L-l~~~~~--l~~~--~-~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~ 434 (570)
. .+++|+.| +..+.. +... . .......+++|+.|+++++. .+... ...+.++++|+.|++++
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----~l~~l------P~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----SLVEL------PSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC-----Ccccc------ChhhhCCCCCCEEECCC
Confidence 1 25667766 433221 0000 0 00111245789999998764 22211 22356789999999987
Q ss_pred cccHHHHHHHHhcccccceeecccCCC-ChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeeccc
Q 008325 435 LLTDQVFLYIGMYAEQLEMLSIAFAGN-SDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 435 ~i~~~~~~~l~~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 510 (570)
+-.-..+... ..+++|+.|++++|.. .. +....++|+.|++++|.++... ..+..+++|+.|++++|+
T Consensus 812 C~~L~~LP~~-~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 812 CINLETLPTG-INLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCcCeeCCC-CCccccCEEECCCCCcccc-----ccccccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCC
Confidence 3111111111 1478999999999973 21 1122468999999999887543 456889999999999983
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.3e-11 Score=112.74 Aligned_cols=191 Identities=18% Similarity=0.090 Sum_probs=103.9
Q ss_pred hHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHH-HHHhcCCCCceeecccCCCCCCCcCHHHH
Q 008325 279 AIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLG-VVAFTCKELQELRVFPSGVDNAAVTEEGL 357 (570)
Q Consensus 279 ~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~l~~~~l 357 (570)
...+.|++++.|+++..---.-..+..++..+|+|+.|+++.+.-..... .....+++|+.|.++ .++++...+
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~-----~CGls~k~V 214 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLN-----SCGLSWKDV 214 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEec-----cCCCCHHHH
Confidence 45567778888888765412234566777777888888887652111111 011134667788887 566777777
Q ss_pred HHHHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-c
Q 008325 358 VAISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-L 435 (570)
Q Consensus 358 ~~l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~ 435 (570)
..+...||+|+.| +.....+....... .....|++|+|+.+. .++ .........+|.|+.|+++. .
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~-----li~-----~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNN-----LID-----FDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCc-----ccc-----cccccccccccchhhhhccccC
Confidence 7777777888777 44332222221111 134567777776654 222 22223345566677777654 2
Q ss_pred ccH-----HHHHHHHhcccccceeecccCCCChH-HHHHHHhcCccCceEEecCCCCC
Q 008325 436 LTD-----QVFLYIGMYAEQLEMLSIAFAGNSDK-GMLYVLNGCKKLRKLEIRDSPFG 487 (570)
Q Consensus 436 i~~-----~~~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~ 487 (570)
+++ ..........|+|++|++..|+|.+. .+..+ ...++|+.|.+-.+.++
T Consensus 283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l-~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 283 IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL-RTLENLKHLRITLNYLN 339 (505)
T ss_pred cchhcCCCccchhhhcccccceeeecccCccccccccchh-hccchhhhhhccccccc
Confidence 222 22222234466777777777776332 22233 34566666666555443
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-10 Score=108.32 Aligned_cols=212 Identities=13% Similarity=0.067 Sum_probs=124.5
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecccc--chhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSI--GDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVA 359 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~ 359 (570)
..+.+|+.+.+.++. +.+.+.......||+++.|+++.+. ....+..++..+|+|+.|+++. +.+....-..
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-----Nrl~~~~~s~ 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-----NRLSNFISSN 191 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-----ccccCCcccc
Confidence 456788888888887 7766655667788999999999873 3455667788889999999982 2221110000
Q ss_pred HHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-ccc
Q 008325 360 ISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLT 437 (570)
Q Consensus 360 l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~ 437 (570)
.....++|+.| +..| +++...+..+...||+|+.|.+..+. .+. .... -......|+.|+|++ .+-
T Consensus 192 ~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~-----~~~----~~~~--~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE-----IIL----IKAT--STKILQTLQELDLSNNNLI 259 (505)
T ss_pred chhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc-----ccc----eecc--hhhhhhHHhhccccCCccc
Confidence 01135667777 4444 56666666666677777777776653 111 0000 011224577777766 222
Q ss_pred HHHHHHHHhcccccceeecccCCCChHHHHH-----HHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 438 DQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY-----VLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 438 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~-----l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
+-........+|.|+.|+++.|++++..... .....++|++|++..|++.+-.-..-+..+++|+.|.+-++.+
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 2221222344677777777777753332221 2234677777777777765533333455666777776666654
No 21
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.98 E-value=3.9e-10 Score=73.20 Aligned_cols=37 Identities=30% Similarity=0.744 Sum_probs=32.5
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhc
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERL 39 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~ 39 (570)
|++||+||+.+||+||+ .+|+.++++|||+|++++..
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCC
Confidence 57899999999999999 99999999999999999753
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.98 E-value=8.2e-11 Score=119.06 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=48.3
Q ss_pred ccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 448 AEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
.+.|+.|.+.+|.++|..++.+ .+.++|+.|++++|++....- ..+.+++.|++|+||||++
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhh-ccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchh
Confidence 4578888888888888888777 678889999999986654332 3557888889999999964
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.92 E-value=2.2e-10 Score=116.07 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=93.9
Q ss_pred ChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHH
Q 008325 364 CPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFL 442 (570)
Q Consensus 364 ~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~ 442 (570)
.+.|+.|....+.++|..+..+. +.++|+.|+|+++... .++ .....+++.|+.|+||| .++.-.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~---~fp--------as~~~kle~LeeL~LSGNkL~~Lp-- 423 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLN---SFP--------ASKLRKLEELEELNLSGNKLTTLP-- 423 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccc---cCC--------HHHHhchHHhHHHhcccchhhhhh--
Confidence 56678887778889999888776 8899999999998431 222 23466778899999999 433322
Q ss_pred HHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeeccc
Q 008325 443 YIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 443 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 510 (570)
.-...++.|+.|...+|.+.... .+ ..++.|+.+|++.|.++...+.+.. ..|+|++|+++||.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fP--e~-~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFP--EL-AQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeech--hh-hhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 22345789999999888863322 23 3468899999999988877665333 33799999999994
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.78 E-value=5.2e-09 Score=108.95 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecc
Q 008325 284 CQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVF 343 (570)
Q Consensus 284 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 343 (570)
.++|+.|+++++. ++.. . ...++|+.|.+.++.-.. +. ...++|+.|+++
T Consensus 301 p~~L~~LdLS~N~-L~~L--p---~lp~~L~~L~Ls~N~L~~-LP---~lp~~Lq~LdLS 350 (788)
T PRK15387 301 PPGLQELSVSDNQ-LASL--P---ALPSELCKLWAYNNQLTS-LP---TLPSGLQELSVS 350 (788)
T ss_pred ccccceeECCCCc-cccC--C---CCcccccccccccCcccc-cc---ccccccceEecC
Confidence 3578888887765 5431 1 112356677766642111 11 112467788887
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.75 E-value=2.4e-08 Score=104.14 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=15.3
Q ss_pred CCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc
Q 008325 286 NLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS 321 (570)
Q Consensus 286 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~ 321 (570)
+|+.|+++++. ++. +.. ..++|+.|+++++
T Consensus 323 ~L~~L~Ls~N~-L~~--LP~---lp~~Lq~LdLS~N 352 (788)
T PRK15387 323 ELCKLWAYNNQ-LTS--LPT---LPSGLQELSVSDN 352 (788)
T ss_pred cccccccccCc-ccc--ccc---cccccceEecCCC
Confidence 56666666654 432 111 1135777777665
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.71 E-value=1.2e-07 Score=82.85 Aligned_cols=128 Identities=14% Similarity=0.025 Sum_probs=86.9
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHH----HhcCccCcEEecCC-cccHHHHHHHHh---cccccceeecccC
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI----VQSCKRLRRLSLSG-LLTDQVFLYIGM---YAEQLEMLSIAFA 459 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~L~~L~l~~-~i~~~~~~~l~~---~~~~L~~L~l~~~ 459 (570)
...+|+.+.+..+ +|. .+|+..+ +..+++|+.|+|.+ .++..+-..++. .++.|+.|.+..|
T Consensus 183 sh~~lk~vki~qN------gIr----pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 183 SHENLKEVKIQQN------GIR----PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred hhcCceeEEeeec------CcC----cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 3456777777666 455 5554433 35678899999987 666666665553 4678999999999
Q ss_pred CCChHHHHHHHhc-----CccCceEEecCCCCChHH-----HHHH-HhccccccEEEeecccCCh--hHHHHHHhhCCc
Q 008325 460 GNSDKGMLYVLNG-----CKKLRKLEIRDSPFGNTA-----LLTD-VGKYETMRSLWMSSCEVTL--GGCQTLAKKMPR 525 (570)
Q Consensus 460 ~i~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~-----~~~~-~~~~~~L~~L~l~~~~i~~--~~~~~l~~~~p~ 525 (570)
-++..|...+.+. .|+|..|...+|.+.... +.++ -.++|-|..|.+.||.++. +....+.+..-.
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~~d~~~~if~~ 331 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEV 331 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHHHHHHHHHhhh
Confidence 9877777776554 688999999888433222 2222 2578889999999998864 334555555544
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.65 E-value=5.1e-07 Score=79.12 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=65.9
Q ss_pred hHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCC-CC----hHH------HHHHHHhCCCCCEEec
Q 008325 91 PWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEG-FT----TDG------LAAIAANCRYLRELDL 159 (570)
Q Consensus 91 ~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~----~~~------l~~l~~~~~~L~~L~l 159 (570)
+++..+.. ...+++++|+++.+......+++....+-+.|...+... ++ +.. +......||+|+..++
T Consensus 21 ~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 21 GVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 44555554 688999999999999999999887665544444432211 11 111 1112247899999999
Q ss_pred cccccccccccccccccCCCCcccEEEeccc
Q 008325 160 QEIEVDDNRGQWISCFPDSCTSLVSLNFSCL 190 (570)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 190 (570)
++|.++...+..+..+......|++|.++++
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 9998777666666666666667777777755
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.61 E-value=1.6e-07 Score=97.50 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=106.6
Q ss_pred hhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHH
Q 008325 365 PKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFL 442 (570)
Q Consensus 365 ~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~ 442 (570)
.+|++| +.+...+.......++..+|.|++|.+++. .+. .+.+..++.++|+|.+|++|+ ++++-
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~------~~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl--- 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR------QFD----NDDFSQLCASFPNLRSLDISGTNISNL--- 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc------eec----chhHHHHhhccCccceeecCCCCccCc---
Confidence 346666 555555555556667778899999988765 333 455788889999999999988 65553
Q ss_pred HHHhcccccceeecccCCCCh-HHHHHHHhcCccCceEEecCCCCChHH--HHH---HHhccccccEEEeecccCChhHH
Q 008325 443 YIGMYAEQLEMLSIAFAGNSD-KGMLYVLNGCKKLRKLEIRDSPFGNTA--LLT---DVGKYETMRSLWMSSCEVTLGGC 516 (570)
Q Consensus 443 ~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~---~~~~~~~L~~L~l~~~~i~~~~~ 516 (570)
.-...+++|+.|.+.+-.+.. ..+..+ -.+++|+.||+|.-...+.. +.. .-..+|+|+.|+.|++.+..+.+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 222346888888888877733 455555 35899999999988433332 222 23468899999999999999999
Q ss_pred HHHHhhCCceE
Q 008325 517 QTLAKKMPRLN 527 (570)
Q Consensus 517 ~~l~~~~p~~~ 527 (570)
+.+..++|.++
T Consensus 268 e~ll~sH~~L~ 278 (699)
T KOG3665|consen 268 EELLNSHPNLQ 278 (699)
T ss_pred HHHHHhCccHh
Confidence 99999998877
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.50 E-value=3.6e-08 Score=64.48 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhc
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERL 39 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~ 39 (570)
+.+||+|++.+||+||+ ..|+.++++|||+|++++..
T Consensus 3 ~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 45799999999999999 99999999999999998754
No 30
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.46 E-value=2.7e-07 Score=58.08 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=31.8
Q ss_pred CcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhc
Q 008325 5 FPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERL 39 (570)
Q Consensus 5 LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~ 39 (570)
||+|++..||.|++ .+|+.++++|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999 89999999999999998754
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=8.9e-07 Score=92.14 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=108.5
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc-cchhhHHHHHhcCCCCceeecccCCCCCCCcCHH-HHHHHHc
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS-IGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEE-GLVAISA 362 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~-~l~~l~~ 362 (570)
.+|++|+++|...+.......+...+|.|++|.+.+. ...+.+..+..++|+|..|+++ .+++++- |+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS-----~TnI~nl~GIS---- 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDIS-----GTNISNLSGIS---- 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecC-----CCCccCcHHHh----
Confidence 4899999999876666667778888999999999985 4455577888899999999999 4455543 333
Q ss_pred cChhhHHHHHhcccCC-hHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHH
Q 008325 363 GCPKLHSLLYFCQQMT-NAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQV 440 (570)
Q Consensus 363 ~~~~L~~Ll~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~ 440 (570)
.+++|+.|...+-.+. ...+..++ .+.+|+.|+++.-.. ................+|+||.|+.|+ .++++.
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~-----~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKN-----NDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccccc-----ccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 3788888843333333 35566666 688899998876531 111001111222334578888888888 778888
Q ss_pred HHHHHhcccccceeecc
Q 008325 441 FLYIGMYAEQLEMLSIA 457 (570)
Q Consensus 441 ~~~l~~~~~~L~~L~l~ 457 (570)
++.+...-|+|+.+.+-
T Consensus 267 le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHhCccHhhhhhh
Confidence 88877777777776654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=1.1e-07 Score=80.61 Aligned_cols=124 Identities=15% Similarity=0.138 Sum_probs=45.0
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
++.++++|+|.++. |+ .+..+...+.+|+.|++++ .|+. +..+ ..++.|+.|++++|.|+..+-
T Consensus 17 n~~~~~~L~L~~n~------I~------~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ------IS------TIENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CH
T ss_pred cccccccccccccc------cc------cccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCCCCCcccc
Confidence 34467888887764 32 1122233457788888887 4443 2222 336889999999998865421
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhH--HHHHHhhCCceE
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGG--CQTLAKKMPRLN 527 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~l~~~~p~~~ 527 (570)
.+...+|+|++|++++|.+.+-.-...+..+|+|+.|++.+|+|+... -..+...+|.++
T Consensus 82 -~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 82 -GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK 143 (175)
T ss_dssp -HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred -chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence 232457899999999997766432345678899999999999886432 234556778765
No 33
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.34 E-value=1.4e-07 Score=87.07 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=69.2
Q ss_pred HHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCCcccHHHHHHHHhc---ccccceeecccCCC
Q 008325 385 VAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMY---AEQLEMLSIAFAGN 461 (570)
Q Consensus 385 l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~~~---~~~L~~L~l~~~~i 461 (570)
....+++|..|+++++- +.+.|. + ......|+.|+++.. .+..+... ...|+.+-.+++.+
T Consensus 430 ~l~~l~kLt~L~L~NN~------Ln~LP~-e-----~~~lv~Lq~LnlS~N----rFr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL------LNDLPE-E-----MGSLVRLQTLNLSFN----RFRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHHhhhcceeeecccch------hhhcch-h-----hhhhhhhheeccccc----ccccchHHHhhHHHHHHHHhccccc
Confidence 33478999999998763 222221 1 223345999999872 12222222 23566666677776
Q ss_pred ChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 462 SDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 462 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
......-+ ++..+|..|++.+|.+.... ..++++.+|++|.++||++.
T Consensus 494 ~~vd~~~l-~nm~nL~tLDL~nNdlq~IP--p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 494 GSVDPSGL-KNMRNLTTLDLQNNDLQQIP--PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccChHHh-hhhhhcceeccCCCchhhCC--hhhccccceeEEEecCCccC
Confidence 22222212 45589999999999765433 46799999999999999865
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.31 E-value=5.4e-06 Score=87.32 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=90.0
Q ss_pred CCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcch
Q 008325 335 KELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLD 414 (570)
Q Consensus 335 ~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~ 414 (570)
++|+.|+++ .+.++...- ...++|+.|....+.++.-.. ...++|+.|++++|. ++..+
T Consensus 283 ~sL~~L~Ls-----~N~Lt~LP~----~lp~sL~~L~Ls~N~Lt~LP~----~l~~sL~~L~Ls~N~------Lt~LP-- 341 (754)
T PRK15370 283 EELRYLSVY-----DNSIRTLPA----HLPSGITHLNVQSNSLTALPE----TLPPGLKTLEAGENA------LTSLP-- 341 (754)
T ss_pred CCCcEEECC-----CCccccCcc----cchhhHHHHHhcCCccccCCc----cccccceeccccCCc------cccCC--
Confidence 467788877 334442110 012357777333344432110 123678888887763 33211
Q ss_pred hhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCCh--HHH
Q 008325 415 EGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGN--TAL 491 (570)
Q Consensus 415 ~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~ 491 (570)
.. -+++|+.|++++ .++. +.. ...++|+.|++++|.++...- .+ .+.|+.|++++|+++. ..+
T Consensus 342 ~~------l~~sL~~L~Ls~N~L~~--LP~--~lp~~L~~LdLs~N~Lt~LP~-~l---~~sL~~LdLs~N~L~~LP~sl 407 (754)
T PRK15370 342 AS------LPPELQVLDVSKNQITV--LPE--TLPPTITTLDVSRNALTNLPE-NL---PAALQIMQASRNNLVRLPESL 407 (754)
T ss_pred hh------hcCcccEEECCCCCCCc--CCh--hhcCCcCEEECCCCcCCCCCH-hH---HHHHHHHhhccCCcccCchhH
Confidence 11 136899999987 4432 111 113689999999998753211 12 1368899999997764 234
Q ss_pred HHHHhccccccEEEeecccCChhHHHHHHh
Q 008325 492 LTDVGKYETMRSLWMSSCEVTLGGCQTLAK 521 (570)
Q Consensus 492 ~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 521 (570)
......++++..|++.+|+++...+..+..
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls~~tl~~L~~ 437 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFSERTIQNMQR 437 (754)
T ss_pred HHHhhcCCCccEEEeeCCCccHHHHHHHHH
Confidence 455666788999999999998777776644
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.29 E-value=1.2e-07 Score=80.32 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=52.4
Q ss_pred HHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCCh
Q 008325 385 VAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSD 463 (570)
Q Consensus 385 l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 463 (570)
+...+.+|+.|+++++. ++.. ++ +..+++|+.|++++ .|++-+ ..+...+|+|+.|.+++|.|.+
T Consensus 37 L~~~l~~L~~L~Ls~N~------I~~l---~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 37 LGATLDKLEVLDLSNNQ------ITKL---EG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp --TT-TT--EEE-TTS--------S-----TT--------TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---S
T ss_pred hhhhhcCCCEEECCCCC------Cccc---cC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCC
Confidence 33356789999998884 4421 11 34578999999988 655432 2233458999999999999844
Q ss_pred -HHHHHHHhcCccCceEEecCCCCChHH--HHHHHhccccccEEEeecc
Q 008325 464 -KGMLYVLNGCKKLRKLEIRDSPFGNTA--LLTDVGKYETMRSLWMSSC 509 (570)
Q Consensus 464 -~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 509 (570)
..+..+ ..+|+|+.|++.+|++++.. -..++..+|+|+.||-...
T Consensus 103 l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 103 LNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 334455 67999999999999887654 2346789999999976544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=3e-07 Score=81.64 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=75.0
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCCC-ChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGN-SDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i-~~~~~ 466 (570)
-.|+++.|+++++. +. . +.. ++.+++|..|+||++ .-..+...-..+.+++.|.+++|.| +-.|+
T Consensus 305 L~Pkir~L~lS~N~------i~----~--v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL 370 (490)
T KOG1259|consen 305 LAPKLRRLILSQNR------IR----T--VQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGL 370 (490)
T ss_pred hccceeEEeccccc------ee----e--ehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhh
Confidence 56889999988773 33 1 112 566788999999883 1122333334567899999999887 55555
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
..+ -+|..|++++|++..-.-...++++|.|+.+.|.+|++
T Consensus 371 ~KL----YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 371 RKL----YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred Hhh----hhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 554 56899999999877654445678999999999999965
No 37
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.8e-06 Score=72.59 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=84.5
Q ss_pred CcEEecCC-cccHHHHHHHHhcccccceeecccCC-CChHHHHHHHhcCccCceEEecCC-CCChHHHHHHHhccccccE
Q 008325 427 LRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNGCKKLRKLEIRDS-PFGNTALLTDVGKYETMRS 503 (570)
Q Consensus 427 L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~ 503 (570)
++.++-++ .|...++..+ ..++.++.|.+.+|. +.|.++..+....++|+.|+|++| .||+.++ ..+.++++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence 56666677 7788888877 458999999999998 699999999887899999999999 8999998 47789999999
Q ss_pred EEeeccc-CCh-h-HHHHHHhhCCceEEEEe
Q 008325 504 LWMSSCE-VTL-G-GCQTLAKKMPRLNVEII 531 (570)
Q Consensus 504 L~l~~~~-i~~-~-~~~~l~~~~p~~~~~~~ 531 (570)
|.+++-+ +.. + ....|.+.+|+++|...
T Consensus 181 L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 181 LHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred HHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 9999885 432 2 34568889999876443
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=4.3e-06 Score=74.47 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCEEEeCCCccCH-HHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCc
Q 008325 103 LEELRLKRMVVSD-DCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 181 (570)
Q Consensus 103 L~~L~L~~~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 181 (570)
++-+.+.++.+.. .+...++..+..+++++|.++.--....+..++.++|.|+.|+++.|.+... +..++....+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPLKN 122 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccccc
Confidence 4455666775543 3456677788899999999874334456777889999999999999976533 2333334458
Q ss_pred ccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCC
Q 008325 182 LVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRA 217 (570)
Q Consensus 182 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 217 (570)
|++|.+.+. ..+..........+|.++.|+++.+
T Consensus 123 l~~lVLNgT--~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGT--GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCC--CCChhhhhhhhhcchhhhhhhhccc
Confidence 888888876 6778888888888888888888765
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.6e-06 Score=75.77 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=32.3
Q ss_pred HHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCC-ChHHHHHHHhcCccCceEEecCCCCCh
Q 008325 420 IVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGN-SDKGMLYVLNGCKKLRKLEIRDSPFGN 488 (570)
Q Consensus 420 ~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~~~~~ 488 (570)
+.+.+|++..+-+.. .+.+..-+.-....|.+..|+++.++| +-.++.++ .+.+.|..|.++++++.+
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L-n~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL-NGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH-cCCchhheeeccCCcccc
Confidence 334445555554443 333333333333445555555555555 33334444 445556666666555544
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.94 E-value=3.3e-06 Score=78.21 Aligned_cols=93 Identities=17% Similarity=0.053 Sum_probs=62.4
Q ss_pred hHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHH
Q 008325 416 GFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTD 494 (570)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 494 (570)
.-...++.+++|++|++++ .|+...-.+ ......++.|.+..+++....-. +.+++..|+.|+|++|+++-... ..
T Consensus 265 cP~~cf~~L~~L~~lnlsnN~i~~i~~~a-Fe~~a~l~eL~L~~N~l~~v~~~-~f~~ls~L~tL~L~~N~it~~~~-~a 341 (498)
T KOG4237|consen 265 CPAKCFKKLPNLRKLNLSNNKITRIEDGA-FEGAAELQELYLTRNKLEFVSSG-MFQGLSGLKTLSLYDNQITTVAP-GA 341 (498)
T ss_pred ChHHHHhhcccceEeccCCCccchhhhhh-hcchhhhhhhhcCcchHHHHHHH-hhhccccceeeeecCCeeEEEec-cc
Confidence 3345577888899999888 444322222 23456788888888886333222 33677889999999998776543 24
Q ss_pred HhccccccEEEeecccC
Q 008325 495 VGKYETMRSLWMSSCEV 511 (570)
Q Consensus 495 ~~~~~~L~~L~l~~~~i 511 (570)
++.+..|.+|++-+|.+
T Consensus 342 F~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccceeeeeehccCcc
Confidence 56777888888887754
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.88 E-value=8.2e-06 Score=75.67 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=49.8
Q ss_pred hcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhH
Q 008325 446 MYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGG 515 (570)
Q Consensus 446 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 515 (570)
..+|+|+.|+++++.++...-.++ .+..++++|.|..|++....- .+++.+..|+.|+|++|+||...
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred hhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEe
Confidence 446889999999988766544444 556778888888886554322 35678899999999999986533
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=3e-06 Score=84.54 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=74.1
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCC-ChHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGN-SDKG 465 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i-~~~~ 465 (570)
.+|.|+.|+|+++. ++ .+. .+..|+.|++|+|+. ++.. +..+....-.|+.|.+.+|.+ +-.|
T Consensus 185 ll~ale~LnLshNk------~~------~v~-~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~g 249 (1096)
T KOG1859|consen 185 LLPALESLNLSHNK------FT------KVD-NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTLRG 249 (1096)
T ss_pred HHHHhhhhccchhh------hh------hhH-HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhhhh
Confidence 45778888888774 33 112 467788899999987 3221 122222223499999999987 5556
Q ss_pred HHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 466 MLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 466 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
++.+ ++|+.|++++|-+.+..-.+.+..+..|+.|+|.||.+
T Consensus 250 ie~L----ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IENL----KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhh----hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6555 88999999999777655445677888999999999986
No 43
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.73 E-value=3.6e-05 Score=76.80 Aligned_cols=332 Identities=17% Similarity=0.177 Sum_probs=170.6
Q ss_pred CCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCC----CCceeecCCCCCc----hhHHH
Q 008325 154 LRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSP----NLKSLRLNRAVPL----DTLQK 225 (570)
Q Consensus 154 L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~~----~~l~~ 225 (570)
+.+|.+.+|.+.+.+...+.......++|+.|+++.+ .+.+.+...+....+ .+++|.+..|.-. ..+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n--~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN--NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC--CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 5566666666666666666666666666677666655 344555444443332 3444555444211 11233
Q ss_pred HHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHH
Q 008325 226 LLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIK 305 (570)
Q Consensus 226 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~ 305 (570)
.+...+.++.+++..+.... .....+. ..+........++++|++..|. ++......
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~--~g~~~l~--------------------~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~ 223 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIE--LGLLVLS--------------------QALESAASPLSSLETLKLSRCG-VTSSSCAL 223 (478)
T ss_pred HHhcccchhHHHHHhcccch--hhhHHHh--------------------hhhhhhhcccccHHHHhhhhcC-cChHHHHH
Confidence 33334444444332222110 0000000 0001001124478888888887 77665544
Q ss_pred HHhcC---CC-CCEEEeccc-cchhhHHHHHhcC----CCCceeecccCCCCCCCcCHHHHHHH---HccChhhHHHHHh
Q 008325 306 LIRFC---RK-LERLWILDS-IGDRGLGVVAFTC----KELQELRVFPSGVDNAAVTEEGLVAI---SAGCPKLHSLLYF 373 (570)
Q Consensus 306 l~~~~---~~-L~~L~l~~~-~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~l~~~~l~~l---~~~~~~L~~Ll~~ 373 (570)
+..-. +. +..|++..+ ..+.++..+...+ +.++.+++. -+.+++.+...+ ...|+.++.+...
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~-----~nsi~~~~~~~L~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS-----RNSITEKGVRDLAEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh-----cCCccccchHHHHHHHhhhHHHHHhhcc
Confidence 43333 33 445666654 5555565554333 456888888 556666655443 3447778888677
Q ss_pred cccCChHHHHHHHhcC---CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCcc-CcEEecCC-cccHHHHHHHHh--
Q 008325 374 CQQMTNAALITVAKNN---SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKR-LRRLSLSG-LLTDQVFLYIGM-- 446 (570)
Q Consensus 374 ~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-L~~L~l~~-~i~~~~~~~l~~-- 446 (570)
.+.+++.+...+.+.. ..+..+.+..+. ..+.. ...+......... +.....++ ...++....+..
T Consensus 299 ~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (478)
T KOG4308|consen 299 NNPLTDYGVELLLEALERKTPLLHLVLGGTG-----KGTRG--GTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAK 371 (478)
T ss_pred cCccccHHHHHHHHHhhhcccchhhhccccC-----ccchh--HHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhh
Confidence 7778877766655433 233333333221 11100 1111111111112 22223333 445555544432
Q ss_pred cc--cccceeecccCCCChHHHHHH---HhcCccCceEEecCCCCChHHHHHH----HhccccccEEEeecccCChhHHH
Q 008325 447 YA--EQLEMLSIAFAGNSDKGMLYV---LNGCKKLRKLEIRDSPFGNTALLTD----VGKYETMRSLWMSSCEVTLGGCQ 517 (570)
Q Consensus 447 ~~--~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~i~~~~~~ 517 (570)
.. +.+..+.+..+.+...+...+ ...++.++.++++.|...+.+...+ -.+. .++.+.++.+.++..+..
T Consensus 372 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~ 450 (478)
T KOG4308|consen 372 SNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTE 450 (478)
T ss_pred cccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchH
Confidence 22 346666666666655444443 3347889999999996665553332 2344 899999999998877777
Q ss_pred HHHhhC
Q 008325 518 TLAKKM 523 (570)
Q Consensus 518 ~l~~~~ 523 (570)
.+.+..
T Consensus 451 ~~~~~~ 456 (478)
T KOG4308|consen 451 ELQRAL 456 (478)
T ss_pred HHHHHH
Confidence 666544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.71 E-value=2.2e-06 Score=59.34 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=45.5
Q ss_pred cccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 449 EQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 449 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
|+|+.|++++|.++......+ .++++|+.|++++|.++.... ..+..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-SNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-TTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHH-cCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 578889999888644332233 567999999999997765432 3568899999999999875
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.70 E-value=0.00011 Score=77.66 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=56.7
Q ss_pred CCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCC--hHH
Q 008325 389 NSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNS--DKG 465 (570)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~--~~~ 465 (570)
+++|+.|+++++. ++..+ .. + .++|+.|++++ .++.- ...+ .+.|+.|++++|+++ +..
T Consensus 345 ~~sL~~L~Ls~N~------L~~LP--~~---l---p~~L~~LdLs~N~Lt~L-P~~l---~~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 345 PPELQVLDVSKNQ------ITVLP--ET---L---PPTITTLDVSRNALTNL-PENL---PAALQIMQASRNNLVRLPES 406 (754)
T ss_pred cCcccEEECCCCC------CCcCC--hh---h---cCCcCEEECCCCcCCCC-CHhH---HHHHHHHhhccCCcccCchh
Confidence 3689999998874 33111 11 1 25799999988 43321 1111 236999999999973 334
Q ss_pred HHHHHhcCccCceEEecCCCCChHHH
Q 008325 466 MLYVLNGCKKLRKLEIRDSPFGNTAL 491 (570)
Q Consensus 466 ~~~l~~~~~~L~~L~l~~~~~~~~~~ 491 (570)
+..+...++++..|++.+|+++...+
T Consensus 407 l~~~~~~~~~l~~L~L~~Npls~~tl 432 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPFSERTI 432 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCccHHHH
Confidence 56665667999999999999986544
No 46
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.68 E-value=2.8e-05 Score=77.57 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCEEecCCCCCCChHHHHHHH---hcCCCCCEEEeccc-cchhhHHHHH
Q 008325 287 LTSLNLSYAPGIHGNELIKLI---RFCRKLERLWILDS-IGDRGLGVVA 331 (570)
Q Consensus 287 L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~~-~~~~~~~~~~ 331 (570)
+.+|.+.+|. +.+.+...+. ...+.|+.|++.++ .++.+...+.
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~ 136 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLC 136 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHH
Confidence 6777777777 6665554443 33455666666654 4455555444
No 47
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.50 E-value=2.5e-05 Score=69.81 Aligned_cols=103 Identities=20% Similarity=0.198 Sum_probs=59.0
Q ss_pred CCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCCh-HHH
Q 008325 389 NSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSD-KGM 466 (570)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~ 466 (570)
.+.|++++|+++. |+. .|++ .+-.|.++.|++|+ .+... .. .+.+++|+.|++++|.++. .|+
T Consensus 283 Wq~LtelDLS~N~------I~~--iDES----vKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNL------ITQ--IDES----VKLAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred Hhhhhhccccccc------hhh--hhhh----hhhccceeEEeccccceeee--hh-hhhcccceEeecccchhHhhhhh
Confidence 4457777777663 220 0222 33457777777776 32221 11 2335677777777777633 232
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
. ..+-+++.|.++.|.+.+- ..++++-+|..|++++|+|.
T Consensus 348 h---~KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 348 H---LKLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred H---hhhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccchh
Confidence 2 2356777777777765442 24466667777788888763
No 48
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=8.7e-05 Score=62.67 Aligned_cols=84 Identities=23% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccc-ccccccccccccccCCCC
Q 008325 102 GLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEI-EVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 102 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~~~ 180 (570)
.++.++-+++.|...++..+. .++.++.|.+.+|..+.+.++..+....++|+.|++++| .|++.+..++.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk---- 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK---- 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh----
Confidence 467777788888888888877 678899999999999999999998888899999999988 67777777776665
Q ss_pred cccEEEeccc
Q 008325 181 SLVSLNFSCL 190 (570)
Q Consensus 181 ~L~~L~l~~~ 190 (570)
+|+.|.+...
T Consensus 177 nLr~L~l~~l 186 (221)
T KOG3864|consen 177 NLRRLHLYDL 186 (221)
T ss_pred hhHHHHhcCc
Confidence 7777777744
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.32 E-value=0.0002 Score=45.15 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=24.4
Q ss_pred ccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 474 KKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 474 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
++|++|++++|++++-. ..+.++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 46777777777777533 235677777777777777654
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.21 E-value=0.00014 Score=78.12 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=35.3
Q ss_pred cCCCCceeecccCCCCCCCcCHHHHHH----HHc-cChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeec
Q 008325 333 TCKELQELRVFPSGVDNAAVTEEGLVA----ISA-GCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILD 401 (570)
Q Consensus 333 ~~~~L~~L~l~~~~~~~~~l~~~~l~~----l~~-~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 401 (570)
.+.+|+.|.+. +|... +..+.. ... .++++..+ ...|....+-.+.. ..|+|+.|.+..|.
T Consensus 715 ~l~~L~~L~i~----~~~~~-e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 715 SLGNLEELSIL----DCGIS-EIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCR 781 (889)
T ss_pred cccCcceEEEE----cCCCc-hhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEEEeccc
Confidence 56788888888 33332 111100 000 25567776 67776666555443 34888999888764
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.20 E-value=0.00025 Score=76.42 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=42.6
Q ss_pred CCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcc
Q 008325 178 SCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGS 240 (570)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 240 (570)
.+++|++|-+..... --...-..++..+|.|+.|++++|.....++..+..+-+|+.|++..
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 455788887774310 01111123356688999999999888888888888888888887754
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=0.0002 Score=72.09 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=60.0
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccc
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYE 499 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (570)
++-++.|++|+|++ .+++.. ....++.|++|+|++|.+.-..--.. .+|. |..|.|++|.++.- ..++++.
T Consensus 183 Lqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~-~gc~-L~~L~lrnN~l~tL---~gie~Lk 254 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSM-VGCK-LQLLNLRNNALTTL---RGIENLK 254 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccch-hhhh-heeeeecccHHHhh---hhHHhhh
Confidence 34457899999998 555543 23558999999999998632211111 2466 99999999977652 2457899
Q ss_pred cccEEEeecccCC
Q 008325 500 TMRSLWMSSCEVT 512 (570)
Q Consensus 500 ~L~~L~l~~~~i~ 512 (570)
+|+.|++++|-++
T Consensus 255 sL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLS 267 (1096)
T ss_pred hhhccchhHhhhh
Confidence 9999999999543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.91 E-value=0.00094 Score=42.09 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=29.0
Q ss_pred cccceeecccCCCChHHHHHHHhcCccCceEEecCCCCCh
Q 008325 449 EQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGN 488 (570)
Q Consensus 449 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 488 (570)
++|++|++++|+|++- .....++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCCC
Confidence 4789999999998763 3434789999999999998875
No 54
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.42 E-value=0.0027 Score=34.77 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=12.8
Q ss_pred cccccEEEeecc-cCChhHHHHHH
Q 008325 498 YETMRSLWMSSC-EVTLGGCQTLA 520 (570)
Q Consensus 498 ~~~L~~L~l~~~-~i~~~~~~~l~ 520 (570)
|++|+.|+|++| +||+.|+..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345556666666 35665555543
No 55
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.35 E-value=0.00025 Score=58.12 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=65.8
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCC--ChH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGN--SDK 464 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i--~~~ 464 (570)
.+|+|+.|+++.+.. .+. ..| +.++|.|+.|++++ .+++..+..-.-.+..|+-|.++.+.+ -..
T Consensus 77 sl~klr~lnvgmnrl----~~l----prg----fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~ 144 (264)
T KOG0617|consen 77 SLPKLRILNVGMNRL----NIL----PRG----FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP 144 (264)
T ss_pred hchhhhheecchhhh----hcC----ccc----cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence 556777776654422 111 122 34567788888876 555554443333356778888888774 333
Q ss_pred HHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 465 GMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 465 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
.+ ..+.+|+.|.+++|.+..-. .-++.+..|++|++.||.++
T Consensus 145 dv----g~lt~lqil~lrdndll~lp--keig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 145 DV----GKLTNLQILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hh----hhhcceeEEeeccCchhhCc--HHHHHHHHHHHHhcccceee
Confidence 33 34588999999888654422 23467888999999999643
No 56
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.26 E-value=0.0031 Score=33.71 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=14.6
Q ss_pred cccccEEEeecccCChhHHHHHH
Q 008325 498 YETMRSLWMSSCEVTLGGCQTLA 520 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~~~~~~l~ 520 (570)
+++|+.|+|++|+|+++|+..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 45677777777777777777664
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0018 Score=57.72 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCCh-HHHHH
Q 008325 391 NFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSD-KGMLY 468 (570)
Q Consensus 391 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~ 468 (570)
+.+.|++.+| +++ | ..++..++.|+.|.||= .|+. +.. ...|++|+.|.|..|.|.+ ..+.+
T Consensus 20 ~vkKLNcwg~------~L~----D---Isic~kMp~lEVLsLSvNkIss--L~p-l~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGC------GLD----D---ISICEKMPLLEVLSLSVNKISS--LAP-LQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HhhhhcccCC------Ccc----H---HHHHHhcccceeEEeecccccc--chh-HHHHHHHHHHHHHhcccccHHHHHH
Confidence 4556666655 344 2 23567778888888865 3322 122 2458899999998888844 44555
Q ss_pred HHhcCccCceEEecCCCCChHH----HHHHHhccccccEEEeecccCChhHHHH
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTA----LLTDVGKYETMRSLWMSSCEVTLGGCQT 518 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 518 (570)
+ +++|+|+.|+|..|+....+ -..++.-+|+|+.|+ +-.+|.+.++.
T Consensus 84 L-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~ 134 (388)
T KOG2123|consen 84 L-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEE 134 (388)
T ss_pred H-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHH
Confidence 5 88999999999988544322 234678889998875 22566665553
No 58
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.17 E-value=0.0059 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=10.6
Q ss_pred cccceeecccCC-CChHHHHHH
Q 008325 449 EQLEMLSIAFAG-NSDKGMLYV 469 (570)
Q Consensus 449 ~~L~~L~l~~~~-i~~~~~~~l 469 (570)
++|++|+|++|. +||.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 445555555554 455555444
No 59
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.01 E-value=0.0019 Score=44.46 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=8.9
Q ss_pred hCCCCCEEeccccccc
Q 008325 150 NCRYLRELDLQEIEVD 165 (570)
Q Consensus 150 ~~~~L~~L~l~~~~~~ 165 (570)
.+++|++|++++|.+.
T Consensus 23 ~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLT 38 (61)
T ss_dssp TGTTESEEEETSSSES
T ss_pred CCCCCCEeEccCCccC
Confidence 4555666666555544
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0012 Score=58.79 Aligned_cols=98 Identities=20% Similarity=0.354 Sum_probs=74.2
Q ss_pred CccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccccc
Q 008325 424 CKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMR 502 (570)
Q Consensus 424 ~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (570)
+.+.++|+..| .++|.++ ...+|.|+.|.|+-|.|+. +..+ ..|++|++|.|..|.|.+..-...+.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIss--L~pl-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISS--LAPL-QRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeecccccc--chhH-HHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45788899988 7777554 4678999999999999843 3333 67999999999999988866557899999999
Q ss_pred EEEeecccCCh-hH--H-HHHHhhCCceE
Q 008325 503 SLWMSSCEVTL-GG--C-QTLAKKMPRLN 527 (570)
Q Consensus 503 ~L~l~~~~i~~-~~--~-~~l~~~~p~~~ 527 (570)
.|||..|.... .| . ......+|+++
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccch
Confidence 99999996422 22 1 22445567765
No 61
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.99 E-value=0.0063 Score=58.06 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh
Q 008325 3 NYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 38 (570)
++||+|+|..|..+|+..-|+++.+.|||.||..+.
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 579999999999999878899999999999999754
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.96 E-value=0.006 Score=55.28 Aligned_cols=37 Identities=35% Similarity=0.780 Sum_probs=31.3
Q ss_pred CCCCcHHHHHHHHhhcC----ChhhhhHHHHHhHHHHHHhh
Q 008325 2 MNYFPDEVIEHVFDFVT----SQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 2 i~~LP~eil~~If~~L~----~~~~~~~~s~Vcr~W~~~~~ 38 (570)
|..|||||+..||...- ..+++.++|+|||.|+..++
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 46899999999998543 15899999999999998865
No 63
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.86 E-value=0.00012 Score=59.89 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=7.7
Q ss_pred CCCCCEEeccccccc
Q 008325 151 CRYLRELDLQEIEVD 165 (570)
Q Consensus 151 ~~~L~~L~l~~~~~~ 165 (570)
+.+|+.|++.+++++
T Consensus 55 l~nlevln~~nnqie 69 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE 69 (264)
T ss_pred hhhhhhhhcccchhh
Confidence 445555555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.79 E-value=0.0034 Score=55.66 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=49.8
Q ss_pred cCccCcEEecCCc--ccHHHHHHHHhcccccceeecccCCCCh-HHHHHHHhcCccCceEEecCCCCCh--HHHHHHHhc
Q 008325 423 SCKRLRRLSLSGL--LTDQVFLYIGMYAEQLEMLSIAFAGNSD-KGMLYVLNGCKKLRKLEIRDSPFGN--TALLTDVGK 497 (570)
Q Consensus 423 ~~~~L~~L~l~~~--i~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 497 (570)
.+|+|+.|.++.. -...++..++..+|+|++|++++|+|.+ ..+..+ +..++|..|++.+|..+. ..-..++.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3467777777662 3445556666667777777777777643 233333 445677777777774332 111234455
Q ss_pred cccccEEEeecc
Q 008325 498 YETMRSLWMSSC 509 (570)
Q Consensus 498 ~~~L~~L~l~~~ 509 (570)
+++|+.|+-...
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 666666654444
No 65
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.58 E-value=0.0052 Score=57.80 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=55.8
Q ss_pred hHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccccc
Q 008325 91 PWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQ 170 (570)
Q Consensus 91 ~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 170 (570)
.|+......+++|+-|+|+++.+.+-.... . ....||.|+++... ...+...+.....|+.+-.+++++......
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~-~lv~Lq~LnlS~Nr---Fr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEEM-G-SLVRLQTLNLSFNR---FRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchhh-h-hhhhhheecccccc---cccchHHHhhHHHHHHHHhccccccccChH
Confidence 334444555566666666665333321111 1 22346666665441 222223332333444444444544433322
Q ss_pred ccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 171 WISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 171 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
.+ .++.+|..|++. ..+...+....+.+.+|++|.+.+++
T Consensus 500 ~l----~nm~nL~tLDL~----nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GL----KNMRNLTTLDLQ----NNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred Hh----hhhhhcceeccC----CCchhhCChhhccccceeEEEecCCc
Confidence 22 233466777766 33455566666667777777776664
No 66
>PLN03150 hypothetical protein; Provisional
Probab=95.55 E-value=0.015 Score=61.22 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=27.1
Q ss_pred hcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCC
Q 008325 422 QSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFG 487 (570)
Q Consensus 422 ~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 487 (570)
..+++|+.|+|++ .+... +......+++|+.|++++|.++...-..+ ..+++|+.|+|++|.++
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLS 503 (623)
T ss_pred hCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCccc
Confidence 3445555555554 22211 11112234555555555555432211112 34455555555555443
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.51 E-value=0.037 Score=47.26 Aligned_cols=88 Identities=22% Similarity=0.213 Sum_probs=55.3
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
+.+.|..|.+.++.|+..+-. +...+++|++|.+.++.-.....+..++ .||.|+.|.+-+|.+.....-.. ...-.
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR~-yvl~k 138 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYRL-YVLYK 138 (233)
T ss_pred CccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCchhcccCcee-EEEEe
Confidence 557888888988877654332 3446788999999876422223344444 79999999998887664432211 11223
Q ss_pred CCcccEEEecc
Q 008325 179 CTSLVSLNFSC 189 (570)
Q Consensus 179 ~~~L~~L~l~~ 189 (570)
.|+|+.|++..
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 45777777763
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.40 E-value=0.01 Score=31.67 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=9.9
Q ss_pred cccceeecccCCCChHHHHHH
Q 008325 449 EQLEMLSIAFAGNSDKGMLYV 469 (570)
Q Consensus 449 ~~L~~L~l~~~~i~~~~~~~l 469 (570)
++|++|+|++|.|+++++.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555555544
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.0081 Score=53.35 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=21.6
Q ss_pred hHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCC
Q 008325 416 GFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGN 461 (570)
Q Consensus 416 ~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i 461 (570)
++..++..||+|++|++++ .|.+-.-..-....++|..|++.+|..
T Consensus 82 ~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 82 GLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred cceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3444555556666666655 333311111122344556666666653
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.02 E-value=0.027 Score=31.34 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=17.3
Q ss_pred ccccEEEeecccCChhHHHHHHhhC
Q 008325 499 ETMRSLWMSSCEVTLGGCQTLAKKM 523 (570)
Q Consensus 499 ~~L~~L~l~~~~i~~~~~~~l~~~~ 523 (570)
++|+.|+|++|.|+++|+..+.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 4677777777777777777766543
No 71
>PLN03150 hypothetical protein; Provisional
Probab=94.96 E-value=0.033 Score=58.76 Aligned_cols=82 Identities=23% Similarity=0.211 Sum_probs=46.6
Q ss_pred ccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCC
Q 008325 128 FKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSP 207 (570)
Q Consensus 128 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~ 207 (570)
++.|+|.++ .+.......+ ..+++|+.|++++|.+....+..+ ..+++|+.|+++++. +.. .+......++
T Consensus 420 v~~L~L~~n-~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N~--lsg-~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYNS--FNG-SIPESLGQLT 490 (623)
T ss_pred EEEEECCCC-CccccCCHHH-hCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCCC--CCC-CCchHHhcCC
Confidence 667777765 3332222223 367888888888876654332222 344578888888551 211 1222344577
Q ss_pred CCceeecCCCC
Q 008325 208 NLKSLRLNRAV 218 (570)
Q Consensus 208 ~L~~L~l~~~~ 218 (570)
+|+.|+++++.
T Consensus 491 ~L~~L~Ls~N~ 501 (623)
T PLN03150 491 SLRILNLNGNS 501 (623)
T ss_pred CCCEEECcCCc
Confidence 88888887765
No 72
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.85 E-value=0.023 Score=51.99 Aligned_cols=36 Identities=25% Similarity=0.640 Sum_probs=32.7
Q ss_pred CCCCc----HHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh
Q 008325 2 MNYFP----DEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 2 i~~LP----~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 38 (570)
+..|| ++|-+.||+||+ ..+++++-+|||+|+.+..
T Consensus 75 i~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhc
Confidence 56799 999999999999 7899999999999999853
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.82 E-value=0.0092 Score=47.40 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=61.4
Q ss_pred cCccCcEEecCCcccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccccc
Q 008325 423 SCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMR 502 (570)
Q Consensus 423 ~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (570)
....|+..+|+++.-...-..+....|.++.|++.++.+++...+ + ...+.|+.|++++|++.... +.+..+.++-
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~-Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-L-AAMPALRSLNLRFNPLNAEP--RVIAPLIKLD 126 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-H-hhhHHhhhcccccCccccch--HHHHHHHhHH
Confidence 334567777776322222234556677888888888888776655 3 45688999999988776644 2333477888
Q ss_pred EEEeecccCChhHHHHHHhhCC
Q 008325 503 SLWMSSCEVTLGGCQTLAKKMP 524 (570)
Q Consensus 503 ~L~l~~~~i~~~~~~~l~~~~p 524 (570)
.|+..++.+-...+..+....|
T Consensus 127 ~Lds~~na~~eid~dl~~s~~~ 148 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDLFYSSLP 148 (177)
T ss_pred HhcCCCCccccCcHHHhccccH
Confidence 8888888543333333333333
No 74
>PF13013 F-box-like_2: F-box-like domain
Probab=94.39 E-value=0.052 Score=41.76 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=26.2
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhH
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCK 31 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr 31 (570)
+.+||+||+..||+|.+ ..+...+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 57899999999999999 778888888888
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.28 E-value=0.024 Score=54.97 Aligned_cols=14 Identities=7% Similarity=-0.024 Sum_probs=9.5
Q ss_pred hCCCCCEEecCCCC
Q 008325 283 VCQNLTSLNLSYAP 296 (570)
Q Consensus 283 ~~~~L~~L~l~~~~ 296 (570)
.++++++|++++|.
T Consensus 50 ~~~~l~~L~Is~c~ 63 (426)
T PRK15386 50 EARASGRLYIKDCD 63 (426)
T ss_pred HhcCCCEEEeCCCC
Confidence 35677777777774
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.44 E-value=0.099 Score=29.06 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=11.2
Q ss_pred ccceeecccCCCChHHHHHHH
Q 008325 450 QLEMLSIAFAGNSDKGMLYVL 470 (570)
Q Consensus 450 ~L~~L~l~~~~i~~~~~~~l~ 470 (570)
+|+.|+|++|.++++|...++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHH
Confidence 455555555555555555543
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.90 E-value=0.086 Score=45.10 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=57.0
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCCh-HHHHHHHhcCccCceEEecCCCCChHHHH--HHHh
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSD-KGMLYVLNGCKKLRKLEIRDSPFGNTALL--TDVG 496 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~ 496 (570)
+..+++|..|.+.. .|+.-. ..+....|+|+.|.+.+|+|.. ..+..+ ..||+|++|.+-+|+++...-. -++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEE
Confidence 34567788888876 444311 1233446788888888888733 334444 5688888888888877765421 2457
Q ss_pred ccccccEEEeecc
Q 008325 497 KYETMRSLWMSSC 509 (570)
Q Consensus 497 ~~~~L~~L~l~~~ 509 (570)
.+|+|+.|+..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 7888888887665
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.40 E-value=0.23 Score=49.31 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=50.9
Q ss_pred HHHHhcccccceeecccCCC-ChHHHHHHHhcCccCceEEecCC--CCChHHHHHHHhccccccEEEeecccCC------
Q 008325 442 LYIGMYAEQLEMLSIAFAGN-SDKGMLYVLNGCKKLRKLEIRDS--PFGNTALLTDVGKYETMRSLWMSSCEVT------ 512 (570)
Q Consensus 442 ~~l~~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~i~------ 512 (570)
..+....|.+..++|++|++ .-+++..+++..|+|+.|+|++| .+.... +----+...|++|.+.||+|.
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhh
Confidence 44555567777777777775 55556666667777777777777 332221 111123345677777777642
Q ss_pred hhHHHHHHhhCCceE
Q 008325 513 LGGCQTLAKKMPRLN 527 (570)
Q Consensus 513 ~~~~~~l~~~~p~~~ 527 (570)
.+-+.++++.+|++.
T Consensus 290 s~yv~~i~~~FPKL~ 304 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLL 304 (585)
T ss_pred HHHHHHHHHhcchhe
Confidence 233566777777765
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.92 E-value=0.063 Score=53.54 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=20.1
Q ss_pred cCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 472 GCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 472 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
.+++++.|++++|.+++... +....+++.|+++++.+
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccceecccccccccccc---ccccCccCEEeccCccc
Confidence 34556666666665554332 34555666666666543
No 80
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.71 E-value=0.12 Score=51.61 Aligned_cols=34 Identities=18% Similarity=-0.006 Sum_probs=18.0
Q ss_pred hcCCCCCEEEeccccchhhHHHHHhcCCCCceeecc
Q 008325 308 RFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVF 343 (570)
Q Consensus 308 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 343 (570)
..+++++.|++.++.....-. .....+++.|+++
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s 285 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLS 285 (394)
T ss_pred ccccccceecccccccccccc--ccccCccCEEecc
Confidence 445556666666652222111 2245667777777
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.74 E-value=0.053 Score=54.33 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=16.0
Q ss_pred ccCceEEecCCCCChHHHHHHHhccccccEEEeeccc
Q 008325 474 KKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 474 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 510 (570)
+.|+.+++++|.+.+..-.. ...+.+++.+++.+|.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 44555555555444332211 2444455555555553
No 82
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.58 E-value=0.066 Score=42.73 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=57.3
Q ss_pred ccCcEEecCCc----ccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccc
Q 008325 425 KRLRRLSLSGL----LTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYET 500 (570)
Q Consensus 425 ~~L~~L~l~~~----i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 500 (570)
..+-.++|+.+ +.| ....+ .....|+..+|++|.+-+..- .+....|.++.|++++|.+++...+ +..++.
T Consensus 27 kE~h~ldLssc~lm~i~d-avy~l-~~~~el~~i~ls~N~fk~fp~-kft~kf~t~t~lNl~~neisdvPeE--~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIAD-AVYML-SKGYELTKISLSDNGFKKFPK-KFTIKFPTATTLNLANNEISDVPEE--LAAMPA 101 (177)
T ss_pred HHhhhcccccchhhHHHH-HHHHH-hCCceEEEEecccchhhhCCH-HHhhccchhhhhhcchhhhhhchHH--HhhhHH
Confidence 34666777662 222 22222 234678888898888633221 3445577899999999999887653 778999
Q ss_pred ccEEEeecccCCh
Q 008325 501 MRSLWMSSCEVTL 513 (570)
Q Consensus 501 L~~L~l~~~~i~~ 513 (570)
|+.|+++.|++..
T Consensus 102 Lr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 102 LRSLNLRFNPLNA 114 (177)
T ss_pred hhhcccccCcccc
Confidence 9999999998654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.08 E-value=0.49 Score=47.13 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHhcccccceeecccC--CC-ChHHHHHHHhcCccCceEEecCCCCChHH------HHHHHhccccccEE
Q 008325 441 FLYIGMYAEQLEMLSIAFA--GN-SDKGMLYVLNGCKKLRKLEIRDSPFGNTA------LLTDVGKYETMRSL 504 (570)
Q Consensus 441 ~~~l~~~~~~L~~L~l~~~--~i-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~~L~~L 504 (570)
+..++...|+|+.|+|+++ .+ ++..+..+ + ...|++|.+.+|++.... +..+.+.+|+|..|
T Consensus 236 ~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k-~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~L 306 (585)
T KOG3763|consen 236 LSSLSQIAPKLKTLDLSHNHSKISSESELDKL-K-GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRL 306 (585)
T ss_pred hhHHHHhcchhheeecccchhhhcchhhhhhh-c-CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheee
Confidence 3344444555555555555 22 22223222 1 233666666666443321 22334455555444
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.53 E-value=0.12 Score=51.90 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=56.3
Q ss_pred cCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCCh-HHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccc
Q 008325 423 SCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSD-KGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYET 500 (570)
Q Consensus 423 ~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 500 (570)
.+.+|..|++.+ .|.. +......+++|+.|+++++.|++ .++.. ++.|+.|++++|.+++.. .+..+++
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~---~~~~l~~ 163 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDIS---GLESLKS 163 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhcc---CCccchh
Confidence 445666666655 2111 12213457889999999999843 34433 466999999999988754 3355899
Q ss_pred ccEEEeecccCCh
Q 008325 501 MRSLWMSSCEVTL 513 (570)
Q Consensus 501 L~~L~l~~~~i~~ 513 (570)
|+.+++++|.++.
T Consensus 164 L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 164 LKLLDLSYNRIVD 176 (414)
T ss_pred hhcccCCcchhhh
Confidence 9999999998755
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.95 E-value=0.17 Score=51.89 Aligned_cols=36 Identities=31% Similarity=0.689 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 38 (570)
+..||.|+..+||.||+ .+++.++++||+.|+.+..
T Consensus 108 i~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred hhcccchhcccccccCC-HHHhhhhhhhcchhhhhhh
Confidence 67899999999999999 8999999999999999864
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.54 E-value=1.1 Score=43.95 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=7.3
Q ss_pred CCCCceeeeCCC
Q 008325 61 FPGLKSLTLKGK 72 (570)
Q Consensus 61 ~~~l~~l~l~~~ 72 (570)
++++++|.+++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 455666666655
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.15 E-value=0.45 Score=22.78 Aligned_cols=10 Identities=30% Similarity=0.411 Sum_probs=3.3
Q ss_pred ccEEEeeccc
Q 008325 501 MRSLWMSSCE 510 (570)
Q Consensus 501 L~~L~l~~~~ 510 (570)
|+.|+|++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3444444443
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=78.87 E-value=1 Score=23.18 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=10.4
Q ss_pred cccEEEeecccCC
Q 008325 500 TMRSLWMSSCEVT 512 (570)
Q Consensus 500 ~L~~L~l~~~~i~ 512 (570)
+|++|+|++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 5788888888765
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=75.77 E-value=1.1 Score=44.95 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=42.2
Q ss_pred ccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 448 AEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
..+|+.|.+..+.+.+-. +.++ +=.|..||++.|+++-..+ -+.++..|++|.|.+|.++.
T Consensus 188 l~slr~l~vrRn~l~~lp-~El~--~LpLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLEDLP-EELC--SLPLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhhhhhhCC-HHHh--CCceeeeecccCceeecch--hhhhhhhheeeeeccCCCCC
Confidence 456777777776642211 1221 3349999999998887654 45789999999999998754
No 90
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=73.03 E-value=9.2 Score=35.89 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=55.5
Q ss_pred hhHHHHHhcCccCcEEecCC--cccHHHHHHHHhcc---cccceeecccCCCChH---HHHHHHhcCccCceEEecCCCC
Q 008325 415 EGFGAIVQSCKRLRRLSLSG--LLTDQVFLYIGMYA---EQLEMLSIAFAGNSDK---GMLYVLNGCKKLRKLEIRDSPF 486 (570)
Q Consensus 415 ~~~~~~~~~~~~L~~L~l~~--~i~~~~~~~l~~~~---~~L~~L~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~~ 486 (570)
..+..+-..-+.++..++.+ .|+...+..+...+ ...+...+.+.+.++. ++..+.+.|+.|+.|++++|.|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 34444445567888888877 77777777766443 3555566666665333 2333445588888888888888
Q ss_pred ChHHHHHHHhccc
Q 008325 487 GNTALLTDVGKYE 499 (570)
Q Consensus 487 ~~~~~~~~~~~~~ 499 (570)
+..++..++..++
T Consensus 268 tg~gi~a~~~al~ 280 (353)
T KOG3735|consen 268 TGLGIMALLRALQ 280 (353)
T ss_pred ccHHHHHHHHHHh
Confidence 8888776665555
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=65.78 E-value=4.6 Score=21.91 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=10.9
Q ss_pred cceeecccCCC-ChHHHHHHHhcCc
Q 008325 451 LEMLSIAFAGN-SDKGMLYVLNGCK 474 (570)
Q Consensus 451 L~~L~l~~~~i-~~~~~~~l~~~~~ 474 (570)
||+|.|....+ .+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 44555554444 2224444444443
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.90 E-value=5.1 Score=21.75 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=12.2
Q ss_pred cccccEEEeecccCCh
Q 008325 498 YETMRSLWMSSCEVTL 513 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~ 513 (570)
+.+|+.|++++|+|+.
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3578888999988753
No 93
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=62.99 E-value=20 Score=33.77 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=39.2
Q ss_pred hHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH---HhcCccCcEEecCC-cccHHHHHHH---Hhccccc
Q 008325 379 NAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI---VQSCKRLRRLSLSG-LLTDQVFLYI---GMYAEQL 451 (570)
Q Consensus 379 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~L~~L~l~~-~i~~~~~~~l---~~~~~~L 451 (570)
+..+..+..+-|.++..++++.. .|+ ...+..+ +....-.+...+.+ ..++....++ ...++.|
T Consensus 187 e~~leri~~nd~~l~evnlnn~~-----~ip----~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl 257 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIR-----RIP----IETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSL 257 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccc-----cCC----HHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchh
Confidence 34444444444556666665443 344 2222222 22223344444444 3333332222 2335566
Q ss_pred ceeecccCCCChHHHHHHHhc
Q 008325 452 EMLSIAFAGNSDKGMLYVLNG 472 (570)
Q Consensus 452 ~~L~l~~~~i~~~~~~~l~~~ 472 (570)
++|++.++-||..|+-++...
T Consensus 258 ~slnvesnFItg~gi~a~~~a 278 (353)
T KOG3735|consen 258 TSLNVESNFITGLGIMALLRA 278 (353)
T ss_pred hheeccccccccHHHHHHHHH
Confidence 666666666666665555443
No 94
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=62.74 E-value=15 Score=28.81 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=42.5
Q ss_pred ccCceEEecCCCCChHHHHHHHhccccccEEEeecc---cCChhHHHHHHhhCCceEEEEeecCCccccccccccccceE
Q 008325 474 KKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSC---EVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKM 550 (570)
Q Consensus 474 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (570)
++=+.+.|..= -+...+..+++.||+|+.+.+-.- .++..+-..|. + -.++++.++
T Consensus 17 ~nE~~VHlAFR-PSN~Dif~Lv~~CP~lk~iqiP~SY~~t~Sksi~mfL~--m--qgI~LleGD---------------- 75 (131)
T PF08004_consen 17 PNEEIVHLAFR-PSNKDIFSLVERCPNLKAIQIPPSYYKTLSKSIKMFLE--M--QGIELLEGD---------------- 75 (131)
T ss_pred CCceEEEEEec-CcchHHHHHHHhCCCCeEEeCChHHHHHHhHHHHHHHH--h--cCceeeccc----------------
Confidence 45555555442 234445678889999998888433 35654333332 2 236777776
Q ss_pred EEEEecCCCCCCCCCCcc
Q 008325 551 YLYRTLVGPRKDAPDFVW 568 (570)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~ 568 (570)
+-|+|.|...|--
T Consensus 76 -----VwGHRKDinEYy~ 88 (131)
T PF08004_consen 76 -----VWGHRKDINEYYE 88 (131)
T ss_pred -----cccccCCCccccc
Confidence 4588988887753
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=62.11 E-value=5.6 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=12.1
Q ss_pred cccccEEEeecccCCh
Q 008325 498 YETMRSLWMSSCEVTL 513 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~ 513 (570)
+++|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 4678899999997643
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=62.11 E-value=5.6 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=12.1
Q ss_pred cccccEEEeecccCCh
Q 008325 498 YETMRSLWMSSCEVTL 513 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~ 513 (570)
+++|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 4678899999997643
No 97
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=58.98 E-value=4 Score=41.25 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=41.8
Q ss_pred cccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHH-HHHhccccccEEEeeccc
Q 008325 449 EQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALL-TDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 449 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 510 (570)
-.|..|+++.|+++-..+. +.++++|++|.|.+|++..-... -..+...--|+|+..-|+
T Consensus 211 LpLi~lDfScNkis~iPv~--fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVD--FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CceeeeecccCceeecchh--hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 3688999999997543332 23568999999999977664432 233455566888888884
No 98
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=50.35 E-value=23 Score=32.13 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHH
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKI 36 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~ 36 (570)
+.+||.|+...|+..|+..+|+..+++|--.-..+
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 56899999999999999999999999985444333
No 99
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=36.10 E-value=32 Score=27.30 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=15.6
Q ss_pred hcccccceeecccCCC-ChHHHHHHHhcCccCceEEec
Q 008325 446 MYAEQLEMLSIAFAGN-SDKGMLYVLNGCKKLRKLEIR 482 (570)
Q Consensus 446 ~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~ 482 (570)
..++.|+. ++++-.. ....+..+..+|..| ..+|+
T Consensus 58 ~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l-~~~l~ 93 (120)
T PF03382_consen 58 AGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL-NQDLS 93 (120)
T ss_pred hhhhhcCC-CcccccccccccHHHHHhhhHHc-CCchh
Confidence 44455555 5544332 222344444555555 34443
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=29.94 E-value=33 Score=18.68 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=6.8
Q ss_pred cCceEEecCCCCC
Q 008325 475 KLRKLEIRDSPFG 487 (570)
Q Consensus 475 ~L~~L~l~~~~~~ 487 (570)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555443
No 101
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=26.03 E-value=13 Score=29.65 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=22.2
Q ss_pred HhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecC
Q 008325 421 VQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRD 483 (570)
Q Consensus 421 ~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 483 (570)
+..|++|+.+.+.+.+..-+-. ....+++|+.+.+.+... ..+- .....|++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~~~~~i~~~-~F~~~~~l~~i~~~~~~~-~i~~-~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 31 FSNCTSLKSINFPNNLTSIGDN-AFSNCKSLESITFPNNLK-SIGD-NAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-SEEEESSTTSCE-TT-TTTT-TT-EEEEETSTT--EE-T-TTTTT-TTECEEEETT
T ss_pred ccccccccccccccccccccee-eeeccccccccccccccc-cccc-ccccccccccccccCc
Confidence 4455566766665421111111 112344566666644211 1111 1113456666666644
No 102
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=24.11 E-value=2.5e+02 Score=19.34 Aligned_cols=14 Identities=0% Similarity=-0.095 Sum_probs=5.5
Q ss_pred ecccCCCChHHHHH
Q 008325 455 SIAFAGNSDKGMLY 468 (570)
Q Consensus 455 ~l~~~~i~~~~~~~ 468 (570)
.+..+.++...+..
T Consensus 38 ~l~~~~~t~~dln~ 51 (70)
T PF07735_consen 38 ELWNSKFTNEDLNK 51 (70)
T ss_pred EEECCCCCHHHHHH
Confidence 33333344444333
Done!