Query 008325
Match_columns 570
No_of_seqs 317 out of 3229
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 23:32:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.5E-62 5.3E-67 516.8 56.8 568 1-570 5-576 (594)
2 3ogk_B Coronatine-insensitive 100.0 8.6E-60 2.9E-64 495.5 42.7 556 3-570 14-588 (592)
3 2p1m_B Transport inhibitor res 100.0 1.8E-31 6.3E-36 280.2 28.5 413 55-510 98-542 (594)
4 3ogk_B Coronatine-insensitive 100.0 2.4E-31 8.2E-36 279.1 22.7 416 55-510 105-549 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 6.5E-29 2.2E-33 252.3 31.0 388 93-528 20-459 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-27 1.1E-31 239.9 25.5 377 101-525 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 2.6E-25 9E-30 215.7 20.9 166 2-217 9-178 (336)
8 4fmz_A Internalin; leucine ric 99.8 4E-20 1.4E-24 179.9 15.4 303 100-512 43-346 (347)
9 2ca6_A RAN GTPase-activating p 99.8 6.2E-19 2.1E-23 174.0 22.5 207 283-527 92-333 (386)
10 3t6q_A CD180 antigen; protein- 99.8 4.1E-23 1.4E-27 217.0 -9.3 85 99-190 79-163 (606)
11 3t6q_A CD180 antigen; protein- 99.8 2.6E-23 9E-28 218.5 -11.1 86 422-511 473-559 (606)
12 3rgz_A Protein brassinosteroid 99.8 2E-23 7E-28 224.3 -12.8 374 98-513 123-528 (768)
13 3vq2_A TLR4, TOLL-like recepto 99.8 1.9E-22 6.6E-27 211.9 -7.2 183 309-512 348-534 (606)
14 1o6v_A Internalin A; bacterial 99.8 6.1E-20 2.1E-24 185.8 10.9 322 99-513 66-389 (466)
15 2ca6_A RAN GTPase-activating p 99.8 3E-18 1E-22 169.0 21.2 191 282-509 119-340 (386)
16 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-20 1.4E-24 191.7 8.1 160 332-512 331-510 (549)
17 2z7x_B TOLL-like receptor 1, v 99.8 3.4E-21 1.2E-25 198.4 -1.3 179 311-513 302-482 (520)
18 3rgz_A Protein brassinosteroid 99.8 1.6E-22 5.6E-27 217.2 -13.3 371 99-512 149-551 (768)
19 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-20 1.4E-24 191.7 4.1 63 422-488 448-511 (549)
20 4fmz_A Internalin; leucine ric 99.8 6.6E-18 2.3E-22 164.2 18.4 304 59-487 41-346 (347)
21 2ast_B S-phase kinase-associat 99.8 4.6E-18 1.6E-22 164.6 16.4 223 285-528 70-300 (336)
22 3vq2_A TLR4, TOLL-like recepto 99.8 4.3E-22 1.5E-26 209.2 -13.8 104 421-527 420-524 (606)
23 1o6v_A Internalin A; bacterial 99.8 3.1E-19 1E-23 180.7 7.3 332 100-527 45-378 (466)
24 2z63_A TOLL-like receptor 4, v 99.8 7.2E-23 2.5E-27 213.7 -20.9 112 388-512 419-531 (570)
25 1ziw_A TOLL-like receptor 3; i 99.7 3.2E-20 1.1E-24 197.6 -4.9 65 448-513 453-518 (680)
26 3v47_A TOLL-like receptor 5B a 99.7 1.7E-19 5.8E-24 182.5 -0.2 112 388-513 297-409 (455)
27 2z7x_B TOLL-like receptor 1, v 99.7 4.5E-20 1.5E-24 190.0 -6.1 389 97-528 41-472 (520)
28 3o6n_A APL1; leucine-rich repe 99.7 2.1E-19 7E-24 177.7 -1.9 322 100-527 44-367 (390)
29 3j0a_A TOLL-like receptor 5; m 99.7 1.9E-20 6.6E-25 203.3 -11.8 217 285-513 266-494 (844)
30 1ziw_A TOLL-like receptor 3; i 99.7 5.3E-20 1.8E-24 196.0 -8.8 212 285-512 248-467 (680)
31 4ecn_A Leucine-rich repeat pro 99.7 4.6E-19 1.6E-23 189.2 -3.5 85 150-241 489-583 (876)
32 4eco_A Uncharacterized protein 99.7 1.2E-19 4.1E-24 190.4 -8.0 111 124-242 204-341 (636)
33 2z63_A TOLL-like receptor 4, v 99.7 1.3E-20 4.4E-25 196.6 -17.7 133 62-218 28-160 (570)
34 3goz_A Leucine-rich repeat-con 99.7 1.6E-15 5.4E-20 148.0 19.2 117 391-514 168-299 (362)
35 3oja_B Anopheles plasmodium-re 99.7 2.4E-18 8.2E-23 179.5 -1.5 320 100-525 50-371 (597)
36 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-19 4.4E-24 196.8 -11.6 398 60-511 22-463 (844)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.3E-19 2.5E-23 182.5 -5.6 370 99-513 74-511 (562)
38 4eco_A Uncharacterized protein 99.7 3.3E-20 1.1E-24 194.6 -16.0 331 148-512 202-579 (636)
39 3goz_A Leucine-rich repeat-con 99.7 2.4E-15 8.3E-20 146.6 19.3 67 424-490 224-300 (362)
40 2id5_A Lingo-1, leucine rich r 99.7 3.6E-18 1.2E-22 173.7 -2.2 301 101-512 32-333 (477)
41 4ecn_A Leucine-rich repeat pro 99.6 2.6E-17 8.7E-22 175.8 2.4 370 57-513 443-841 (876)
42 3bz5_A Internalin-J, INLJ; leu 99.6 6E-17 2E-21 162.5 4.5 142 59-241 39-180 (457)
43 3v47_A TOLL-like receptor 5B a 99.6 4.7E-17 1.6E-21 164.6 0.9 342 126-528 30-399 (455)
44 3bz5_A Internalin-J, INLJ; leu 99.6 5.8E-17 2E-21 162.6 0.8 201 99-343 40-241 (457)
45 3o6n_A APL1; leucine-rich repe 99.6 1.7E-16 5.7E-21 156.9 3.7 323 60-502 43-367 (390)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.3E-17 8E-22 171.1 -6.8 396 59-513 28-487 (562)
47 3oja_B Anopheles plasmodium-re 99.5 1.5E-15 5E-20 158.5 2.9 300 95-499 69-370 (597)
48 2id5_A Lingo-1, leucine rich r 99.5 3.2E-16 1.1E-20 159.3 -3.5 277 126-513 32-310 (477)
49 3un9_A NLR family member X1; l 99.5 6.1E-13 2.1E-17 129.0 19.1 195 283-514 70-285 (372)
50 3e4g_A ATP synthase subunit S, 99.5 4.8E-14 1.6E-18 118.3 8.0 104 425-530 61-173 (176)
51 3un9_A NLR family member X1; l 99.5 1.2E-13 4E-18 134.1 11.9 137 377-523 113-263 (372)
52 4g8a_A TOLL-like receptor 4; l 99.4 2.3E-16 7.8E-21 166.8 -11.5 111 99-218 74-184 (635)
53 1jl5_A Outer protein YOPM; leu 99.4 1E-14 3.4E-19 146.1 0.4 99 390-513 297-410 (454)
54 1xku_A Decorin; proteoglycan, 99.4 3.2E-15 1.1E-19 144.0 -4.4 110 388-510 214-330 (330)
55 2z80_A TOLL-like receptor 2, v 99.4 2.8E-14 9.6E-19 138.7 1.9 188 282-513 121-315 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.4 8.6E-13 2.9E-17 136.3 11.4 81 425-517 221-302 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.4 1E-14 3.5E-19 139.3 -3.2 82 424-509 190-272 (317)
58 4g8a_A TOLL-like receptor 4; l 99.4 1.2E-15 4.1E-20 161.3 -10.8 131 101-242 52-184 (635)
59 2z80_A TOLL-like receptor 2, v 99.4 2.1E-13 7.3E-18 132.5 5.7 166 283-489 147-316 (353)
60 1xku_A Decorin; proteoglycan, 99.4 7.4E-14 2.5E-18 134.4 0.7 86 388-485 238-330 (330)
61 1jl5_A Outer protein YOPM; leu 99.3 1.2E-13 4E-18 138.4 1.0 300 101-513 71-371 (454)
62 3o53_A Protein LRIM1, AGAP0063 99.3 3E-13 1E-17 129.2 0.5 188 282-527 77-265 (317)
63 3g06_A SSPH2 (leucine-rich rep 99.3 1.1E-11 3.8E-16 128.0 12.0 240 101-491 61-301 (622)
64 2ft3_A Biglycan; proteoglycan, 99.3 2.3E-14 7.9E-19 138.0 -8.2 289 102-509 34-330 (332)
65 3zyj_A Leucine-rich repeat-con 99.3 6.4E-13 2.2E-17 133.2 1.8 36 283-320 134-169 (440)
66 3zyi_A Leucine-rich repeat-con 99.3 7.4E-13 2.5E-17 133.2 2.2 62 448-511 241-302 (452)
67 3oja_A Leucine-rich immune mol 99.3 1.8E-13 6.1E-18 138.5 -2.4 58 448-507 213-270 (487)
68 3e4g_A ATP synthase subunit S, 99.3 1.2E-11 4.3E-16 103.7 8.4 100 391-502 62-170 (176)
69 2ra8_A Uncharacterized protein 99.3 2.8E-11 9.7E-16 116.2 12.0 86 447-533 250-340 (362)
70 1io0_A Tropomodulin; LRR prote 99.2 1.4E-10 4.9E-15 100.5 15.2 127 380-515 26-167 (185)
71 2ft3_A Biglycan; proteoglycan, 99.2 4E-14 1.4E-18 136.3 -9.0 270 101-485 54-331 (332)
72 4glp_A Monocyte differentiatio 99.2 1.1E-12 3.6E-17 125.0 0.9 188 283-515 115-310 (310)
73 1h6u_A Internalin H; cell adhe 99.2 2.8E-12 9.6E-17 121.7 3.2 191 284-513 40-231 (308)
74 1ozn_A Reticulon 4 receptor; N 99.2 1.2E-13 4.2E-18 129.8 -6.4 111 388-512 127-238 (285)
75 1wwl_A Monocyte differentiatio 99.2 7.7E-14 2.6E-18 132.9 -9.5 211 259-514 93-311 (312)
76 3oja_A Leucine-rich immune mol 99.2 2.9E-13 9.8E-18 137.0 -6.1 185 282-525 77-263 (487)
77 2z66_A Variable lymphocyte rec 99.2 8.1E-14 2.8E-18 132.6 -9.8 87 422-510 196-285 (306)
78 4fcg_A Uncharacterized protein 99.2 5.4E-12 1.8E-16 120.8 2.7 227 59-343 78-309 (328)
79 1ogq_A PGIP-2, polygalacturona 99.2 1.4E-14 4.8E-19 138.0 -15.2 85 421-510 217-302 (313)
80 2ra8_A Uncharacterized protein 99.2 3.1E-10 1.1E-14 109.0 14.1 169 303-510 164-341 (362)
81 2z66_A Variable lymphocyte rec 99.1 5E-14 1.7E-18 134.0 -12.9 211 282-513 49-262 (306)
82 1ogq_A PGIP-2, polygalacturona 99.1 2.8E-13 9.6E-18 128.9 -7.8 84 101-190 50-135 (313)
83 3zyi_A Leucine-rich repeat-con 99.1 1.4E-11 4.6E-16 124.0 -0.5 222 101-343 75-298 (452)
84 3zyj_A Leucine-rich repeat-con 99.1 1.2E-11 4E-16 124.0 -1.0 221 101-343 64-287 (440)
85 1ozn_A Reticulon 4 receptor; N 99.1 2E-11 6.9E-16 114.6 0.5 201 101-343 32-233 (285)
86 1h6t_A Internalin B; cell adhe 99.1 1.3E-10 4.6E-15 109.0 6.1 173 283-516 44-217 (291)
87 4fcg_A Uncharacterized protein 99.1 1E-11 3.6E-16 118.8 -1.6 60 101-165 81-140 (328)
88 2z62_A TOLL-like receptor 4, v 99.0 1.1E-12 3.8E-17 122.6 -9.1 112 388-513 122-238 (276)
89 4glp_A Monocyte differentiatio 99.0 3.2E-10 1.1E-14 107.7 6.7 36 425-463 272-308 (310)
90 1wwl_A Monocyte differentiatio 99.0 1E-11 3.4E-16 118.2 -4.1 208 229-489 93-311 (312)
91 1h6u_A Internalin H; cell adhe 99.0 7.5E-10 2.6E-14 104.9 7.3 99 101-217 41-139 (308)
92 4ezg_A Putative uncharacterize 99.0 3.3E-10 1.1E-14 99.7 4.3 108 388-513 86-195 (197)
93 1m9s_A Internalin B; cell inva 99.0 6.1E-10 2.1E-14 114.9 6.8 170 283-513 41-211 (605)
94 1io0_A Tropomodulin; LRR prote 98.9 1.9E-08 6.7E-13 87.0 13.5 127 89-218 24-162 (185)
95 2o6q_A Variable lymphocyte rec 98.9 5.6E-11 1.9E-15 110.5 -3.3 181 285-512 37-218 (270)
96 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.6E-09 5.5E-14 71.6 4.1 37 2-39 9-45 (53)
97 3rfs_A Internalin B, repeat mo 98.9 2.1E-10 7.4E-15 106.6 -0.3 179 283-512 39-218 (272)
98 3rfs_A Internalin B, repeat mo 98.9 1.6E-09 5.6E-14 100.6 5.3 188 100-370 40-227 (272)
99 4ezg_A Putative uncharacterize 98.8 1.6E-09 5.5E-14 95.2 3.8 153 282-488 41-195 (197)
100 2je0_A Acidic leucine-rich nuc 98.8 1.6E-09 5.6E-14 90.4 3.0 125 389-527 16-143 (149)
101 2z62_A TOLL-like receptor 4, v 98.7 7.6E-10 2.6E-14 103.2 -2.5 52 289-343 181-232 (276)
102 2je0_A Acidic leucine-rich nuc 98.7 1.1E-09 3.8E-14 91.5 -1.6 107 388-508 40-149 (149)
103 1h6t_A Internalin B; cell adhe 98.7 2E-08 6.7E-13 94.2 6.6 101 100-218 45-145 (291)
104 1p9a_G Platelet glycoprotein I 98.7 4E-10 1.4E-14 105.6 -5.0 176 285-512 31-208 (290)
105 1pgv_A TMD-1, tropomodulin TMD 98.7 1.8E-07 6.2E-12 80.0 11.7 125 379-512 30-170 (197)
106 2o6q_A Variable lymphocyte rec 98.7 6E-09 2E-13 96.7 2.7 176 101-343 37-213 (270)
107 2ell_A Acidic leucine-rich nuc 98.7 1.8E-09 6.1E-14 92.3 -0.8 110 388-511 47-159 (168)
108 1pgv_A TMD-1, tropomodulin TMD 98.6 1.8E-07 6.1E-12 80.0 10.8 110 414-523 30-153 (197)
109 2ell_A Acidic leucine-rich nuc 98.6 2.8E-09 9.7E-14 91.0 -0.5 127 388-528 22-151 (168)
110 2xwt_C Thyrotropin receptor; s 98.6 7.8E-11 2.7E-15 107.4 -11.5 57 285-343 31-88 (239)
111 3m19_A Variable lymphocyte rec 98.6 2.8E-09 9.5E-14 97.8 -2.4 90 422-514 104-194 (251)
112 1m9s_A Internalin B; cell inva 98.6 5.3E-08 1.8E-12 100.5 6.4 101 100-218 42-142 (605)
113 1xeu_A Internalin C; cellular 98.6 8.3E-09 2.8E-13 95.1 0.1 166 286-514 20-187 (263)
114 1dce_A Protein (RAB geranylger 98.5 6.5E-09 2.2E-13 106.6 -1.0 121 390-528 441-564 (567)
115 1p9a_G Platelet glycoprotein I 98.5 2.2E-08 7.4E-13 93.8 2.1 103 101-217 31-134 (290)
116 2xwt_C Thyrotropin receptor; s 98.5 4.7E-09 1.6E-13 95.5 -3.9 197 101-343 31-234 (239)
117 3sb4_A Hypothetical leucine ri 98.5 5E-08 1.7E-12 93.3 2.9 34 471-505 294-327 (329)
118 3m19_A Variable lymphocyte rec 98.4 4.4E-08 1.5E-12 89.7 1.3 62 101-165 35-96 (251)
119 1xeu_A Internalin C; cellular 98.4 1E-07 3.5E-12 87.7 3.2 149 282-489 38-187 (263)
120 3cvr_A Invasion plasmid antige 98.3 1.3E-08 4.4E-13 103.9 -4.8 112 388-521 138-252 (571)
121 1ds9_A Outer arm dynein; leuci 98.3 1.4E-07 4.6E-12 82.9 1.5 108 388-513 46-154 (198)
122 1ds9_A Outer arm dynein; leuci 98.3 5.1E-07 1.7E-11 79.2 4.3 109 388-513 68-186 (198)
123 1dce_A Protein (RAB geranylger 98.3 5.5E-09 1.9E-13 107.1 -9.8 105 387-506 460-567 (567)
124 1a9n_A U2A', U2A'; complex (nu 98.2 1.4E-07 4.7E-12 81.1 -0.2 63 448-511 63-125 (176)
125 3sb4_A Hypothetical leucine ri 98.2 4.7E-08 1.6E-12 93.5 -3.8 97 414-515 215-313 (329)
126 1a9n_A U2A', U2A'; complex (nu 98.1 4.3E-07 1.5E-11 77.9 0.9 82 101-190 42-123 (176)
127 3cvr_A Invasion plasmid antige 98.1 1.5E-06 5E-11 88.7 3.4 113 62-218 59-171 (571)
128 2xot_A Amphoterin-induced prot 98.1 3.3E-08 1.1E-12 95.9 -8.5 159 311-513 39-203 (361)
129 2o6s_A Variable lymphocyte rec 98.0 2.3E-06 8E-11 75.6 4.0 38 126-165 28-65 (208)
130 2v9t_B SLIT homolog 2 protein 98.0 4.1E-07 1.4E-11 81.2 -1.7 111 388-512 54-165 (220)
131 3e6j_A Variable lymphocyte rec 98.0 7.9E-07 2.7E-11 79.9 -0.0 128 101-240 40-168 (229)
132 2v70_A SLIT-2, SLIT homolog 2 98.0 5.4E-07 1.8E-11 80.4 -1.7 111 388-512 55-166 (220)
133 3l2o_B F-box only protein 4; s 97.9 2.1E-06 7.2E-11 76.9 1.7 36 2-38 5-40 (312)
134 2o6s_A Variable lymphocyte rec 97.9 1.7E-06 5.9E-11 76.4 0.8 108 99-217 50-158 (208)
135 3e6j_A Variable lymphocyte rec 97.9 8.4E-07 2.9E-11 79.7 -1.4 134 364-513 39-173 (229)
136 2e31_A FBS1, F-box only protei 97.9 4.8E-06 1.6E-10 75.8 3.0 36 2-38 51-87 (297)
137 1w8a_A SLIT protein; signaling 97.9 6.5E-07 2.2E-11 78.0 -2.7 110 390-512 29-139 (192)
138 2v70_A SLIT-2, SLIT homolog 2 97.9 9.5E-07 3.3E-11 78.8 -1.8 124 390-527 32-156 (220)
139 4ay9_X Follicle-stimulating ho 97.9 5.8E-08 2E-12 93.7 -10.5 57 285-343 30-87 (350)
140 2o6r_A Variable lymphocyte rec 97.9 1.3E-06 4.5E-11 74.9 -1.2 111 389-513 27-138 (177)
141 2wfh_A SLIT homolog 2 protein 97.8 2E-06 6.9E-11 74.8 -0.3 108 390-512 31-139 (193)
142 2v9t_B SLIT homolog 2 protein 97.8 3E-06 1E-10 75.5 0.5 64 100-166 55-118 (220)
143 2xot_A Amphoterin-induced prot 97.8 2.4E-06 8.1E-11 82.7 -1.1 116 388-516 62-180 (361)
144 4b8c_D Glucose-repressible alc 97.8 4.4E-06 1.5E-10 88.5 0.5 108 388-513 222-330 (727)
145 3rw6_A Nuclear RNA export fact 97.5 6.8E-05 2.3E-09 68.0 5.0 85 442-527 163-254 (267)
146 4ay9_X Follicle-stimulating ho 97.5 9.4E-07 3.2E-11 85.2 -7.8 67 99-166 52-118 (350)
147 2o6r_A Variable lymphocyte rec 97.4 2.6E-05 9E-10 66.7 0.1 107 101-218 28-135 (177)
148 3g39_A Variable lymphocyte rec 97.4 2.5E-05 8.5E-10 66.3 -0.1 86 425-513 30-116 (170)
149 3v7d_B Cell division control p 97.4 4.6E-05 1.6E-09 76.5 1.7 37 2-39 15-51 (464)
150 2wfh_A SLIT homolog 2 protein 97.3 4.2E-05 1.4E-09 66.4 1.0 106 101-218 31-137 (193)
151 1w8a_A SLIT protein; signaling 97.3 1.7E-05 5.8E-10 68.9 -2.1 101 425-528 29-130 (192)
152 2r9u_A Variable lymphocyte rec 97.3 3.3E-05 1.1E-09 65.8 -0.3 85 425-512 33-118 (174)
153 3rw6_A Nuclear RNA export fact 97.3 0.00025 8.7E-09 64.2 5.2 57 447-505 194-257 (267)
154 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00014 4.9E-09 72.4 3.4 37 1-38 18-54 (445)
155 4b8c_D Glucose-repressible alc 97.2 0.00014 4.8E-09 77.0 2.9 58 282-343 267-324 (727)
156 1p22_A F-BOX/WD-repeat protein 97.2 8.7E-05 3E-09 73.8 1.1 36 2-38 11-50 (435)
157 4fs7_A Uncharacterized protein 97.1 2.5E-06 8.5E-11 83.7 -10.4 32 99-134 69-102 (394)
158 4fdw_A Leucine rich hypothetic 96.7 6.5E-05 2.2E-09 73.3 -4.3 82 421-511 267-357 (401)
159 4fdw_A Leucine rich hypothetic 96.5 0.00027 9.2E-09 68.9 -1.0 98 102-216 136-235 (401)
160 4fs7_A Uncharacterized protein 96.5 2.9E-05 1E-09 76.0 -8.2 36 124-162 69-104 (394)
161 3g39_A Variable lymphocyte rec 96.4 0.00083 2.8E-08 56.7 1.3 14 101-114 30-43 (170)
162 2r9u_A Variable lymphocyte rec 96.4 0.00091 3.1E-08 56.7 1.3 35 101-136 33-67 (174)
163 2ifg_A High affinity nerve gro 96.0 0.00074 2.5E-08 64.7 -1.4 39 448-487 55-93 (347)
164 2ifg_A High affinity nerve gro 95.0 0.0047 1.6E-07 59.0 0.4 63 448-512 30-93 (347)
165 4gt6_A Cell surface protein; l 85.2 0.16 5.5E-06 49.2 -0.2 77 421-509 284-367 (394)
166 3rfe_A Platelet glycoprotein I 73.8 1.1 3.7E-05 35.2 1.3 36 475-511 32-67 (130)
167 4gt6_A Cell surface protein; l 73.8 2 6.7E-05 41.4 3.3 12 227-238 353-364 (394)
168 4h09_A Hypothetical leucine ri 73.5 0.31 1.1E-05 46.8 -2.5 83 421-509 259-343 (379)
169 3rfe_A Platelet glycoprotein I 61.7 2.5 8.6E-05 33.1 1.0 36 450-486 32-67 (130)
170 4h09_A Hypothetical leucine ri 50.1 5.7 0.0002 37.8 1.6 122 99-238 215-340 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.5e-62 Score=516.75 Aligned_cols=568 Identities=62% Similarity=1.084 Sum_probs=507.2
Q ss_pred CCCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhcccceEEeccccccchHHHHhhCCCCceeeeCCCCCcccCCC
Q 008325 1 MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNL 80 (570)
Q Consensus 1 ~i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~ 80 (570)
++++||+|||.+||+||+..+|+.++++|||+|+++..+.+..+.+..++...+..+..+|++++++++++++.+.+.++
T Consensus 5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l 84 (594)
T 2p1m_B 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL 84 (594)
T ss_dssp -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhccc
Confidence 46899999999999999978999999999999999988888899999998888899999999999999999999999999
Q ss_pred CCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecc
Q 008325 81 LPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQ 160 (570)
Q Consensus 81 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 160 (570)
.|..|++...+|+..+...+++|++|+++++.+++..+..+++.+++|++|++.+|..++..++..+...|++|++|+++
T Consensus 85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 164 (594)
T 2p1m_B 85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164 (594)
T ss_dssp SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred ccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence 99999999999999999999999999999999999999999878999999999999888888898988899999999999
Q ss_pred ccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcc
Q 008325 161 EIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGS 240 (570)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 240 (570)
+|.+.+.+..++..+...+++|++|+++++...++...+..+...+++|+.|++++|..+.++...+..+++|++|+++.
T Consensus 165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 99988888888888888999999999997754578888999888899999999999987888999999999999999988
Q ss_pred cccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecc
Q 008325 241 FVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILD 320 (570)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 320 (570)
+...........+...+..+++|+.|.++.......+..+...+++|++|++++|. +++..+..++..+++|+.|++.+
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcC
Confidence 77655556677777788899999999766677777788777889999999999999 99999988889999999999999
Q ss_pred ccchhhHHHHHhcCCCCceeecccCC----CCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceee
Q 008325 321 SIGDRGLGVVAFTCKELQELRVFPSG----VDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFR 396 (570)
Q Consensus 321 ~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~ 396 (570)
+.++.++..+...+++|++|++..++ .++..+++.++..+...|++|+.|...|+.+++.++..+...+++|+.|+
T Consensus 324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence 98888888888889999999994210 14778999999999888999999977899999999999988899999999
Q ss_pred eeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccC
Q 008325 397 LCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKL 476 (570)
Q Consensus 397 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 476 (570)
+++++..+|..+++.+.+.++..++..+++|+.|++++.+++.++..++..+++|+.|++++|.+++.++..++.+|++|
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 99654445668887777888999999999999999999999999999998899999999999999999999998899999
Q ss_pred ceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHHhhCCceEEEEeecCCccccccccccccceEEEEEec
Q 008325 477 RKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTL 556 (570)
Q Consensus 477 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (570)
++|++++|.+++.++...+.++++|+.|++++|+++.+|++.+...+|.++++++.++...+ ..++....++++.||++
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 562 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD-SRPESCPVERVFIYRTV 562 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG-GSCTTSBCSEEEEEECS
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc-cccccchhhhhhhhhcc
Confidence 99999999999888877888899999999999999999999999999999999998765322 33466788899999999
Q ss_pred CCCCCCCCCCcccC
Q 008325 557 VGPRKDAPDFVWTL 570 (570)
Q Consensus 557 ~~~~~~~~~~~~~~ 570 (570)
.|+|.++|+|++++
T Consensus 563 ~~~~~~~p~~~~~l 576 (594)
T 2p1m_B 563 AGPRFDMPGFVWNM 576 (594)
T ss_dssp SCSCSCCCTTEEEC
T ss_pred CCCCCCCCCceEec
Confidence 99999999999875
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=8.6e-60 Score=495.45 Aligned_cols=556 Identities=33% Similarity=0.594 Sum_probs=479.1
Q ss_pred CCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhcccceEEeccccccchHHHHhhCCCCceeeeCCCCCcccCCCCC
Q 008325 3 NYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLLP 82 (570)
Q Consensus 3 ~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~~~ 82 (570)
++||+|+|.+||+||+..+|+.++++|||+|+.+..+.+..+.+..++...+..+..+++++++|++++++.+.+++.+|
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 47999999999999933999999999999999998888888888888878889999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCC-ccEEEecCCCCCChHHHHHHHHhCCCCCEEeccc
Q 008325 83 YDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVN-FKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQE 161 (570)
Q Consensus 83 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 161 (570)
..|++...+|+..+...+++|++|+|+++.+++..+..++..+++ |++|++.+|..++..++..+...|++|++|++++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 999999999999999999999999999999999999988876777 9999999998788888988888999999999999
Q ss_pred cccccccccccccccCCCCcccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcc
Q 008325 162 IEVDDNRGQWISCFPDSCTSLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGS 240 (570)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 240 (570)
|.+.+.+..++..++..+++|++|+++++. ..++...+..+...+++|+.|++++|. +.++...+..+++|++|.++.
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECB
T ss_pred ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccc
Confidence 998888777777788888999999999662 235678888999999999999999975 556778899999999999976
Q ss_pred cccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecc
Q 008325 241 FVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILD 320 (570)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 320 (570)
+...... ......+..+++|+.|. +.......+..+...+++|++|++++|. +++..+..++..+++|+.|++.+
T Consensus 253 ~~~~~~~---~~~~~~l~~~~~L~~L~-l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 253 LNEDIGM---PEKYMNLVFPRKLCRLG-LSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp CCCCTTC---TTSSSCCCCCTTCCEEE-ETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred cccccch---HHHHHHhhccccccccC-ccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 4432110 00011223445555553 3334556677777889999999999999 99999888889999999999998
Q ss_pred ccchhhHHHHHhcCCCCceeecccCCCC----------CCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCC
Q 008325 321 SIGDRGLGVVAFTCKELQELRVFPSGVD----------NAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNS 390 (570)
Q Consensus 321 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~ 390 (570)
+..+.++..+...|++|++|+++ + ++.+++.++..+...|++|+.|...|+.+++.++..+...++
T Consensus 328 ~~~~~~l~~~~~~~~~L~~L~L~----~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 403 (592)
T 3ogk_B 328 VIGDRGLEVLAQYCKQLKRLRIE----RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK 403 (592)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEE----CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHhCCCCCEEEee----cCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC
Confidence 88899999998899999999999 5 789999999998888999999955899999999999998899
Q ss_pred CCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecC---CcccHHHHHHHHhcccccceeecccCCCChHHHH
Q 008325 391 NFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLS---GLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGML 467 (570)
Q Consensus 391 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~---~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 467 (570)
+|+.|+++.++ .|..+++.+.+.++..++..+++|++|+++ +.+++.++..+...+++|+.|++++|++++.++.
T Consensus 404 ~L~~L~l~~~~--~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 404 NLCDFRLVLLD--REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp SCCEEEEEECS--CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCcEEEEeecC--CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 99999998764 355888777778899999999999999995 3689999999999999999999999999999999
Q ss_pred HHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHHhhCCceEEEEeecCCcccc----cccc
Q 008325 468 YVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEF----SLDD 543 (570)
Q Consensus 468 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~----~~~~ 543 (570)
.++.+|++|++|+|++|.+++.++......+++|+.|+|++|++++.|++.+...+|.++++++......++ ..++
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~ 561 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE 561 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-------------
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcC
Confidence 999999999999999999999888888899999999999999999999999999999999999876522222 4556
Q ss_pred ccccceEEEEEecCCCCCCCCCCcccC
Q 008325 544 RQKVGKMYLYRTLVGPRKDAPDFVWTL 570 (570)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (570)
....++++.|+++.|+|+++|+++++|
T Consensus 562 ~~~~~~~~~~~~~~g~~~~~p~~~~~l 588 (592)
T 3ogk_B 562 MEHPAHILAYYSLAGQRTDCPTTVRVL 588 (592)
T ss_dssp --CCCEEEEEECTTCSCSCCCTTCEEC
T ss_pred CcchhheEeeeecCCCccCCCCCeEec
Confidence 667899999999999999999999986
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.8e-31 Score=280.20 Aligned_cols=413 Identities=20% Similarity=0.227 Sum_probs=332.9
Q ss_pred HHHHhhCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCC-ccCHHHHHHHHhhCCCccEEEe
Q 008325 55 ERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRM-VVSDDCLELLSRSFVNFKSLVL 133 (570)
Q Consensus 55 ~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~l 133 (570)
..+...+++|++|+++++. + .+..+..+...+++|++|++++| .+++..+..+...+++|++|++
T Consensus 98 ~~l~~~~~~L~~L~L~~~~-~-------------~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMV-V-------------TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp HHHHHHCTTCCEEEEESCB-C-------------CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhCCCCCeEEeeCcE-E-------------cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 4567889999999999753 2 23335667778999999999999 8888888888888999999999
Q ss_pred cCCC--CCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCce
Q 008325 134 VSCE--GFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKS 211 (570)
Q Consensus 134 ~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 211 (570)
.+|. ......+..+...+++|++|++++|. .......+..+...+++|++|+++.+ .....+..+...+++|+.
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~---~~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEE 239 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT---SCHHHHHHHHHHCTTCSE
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC---CcHHHHHHHHhcCCcceE
Confidence 9885 22233344555678999999999986 22223334455556789999999976 244558888889999999
Q ss_pred eecCCCCC------chhHHHHHhhCCCceee-cCcccccCCChHHHHHHHHHHhhcCCccccc-CCcccChhhHHhHhhh
Q 008325 212 LRLNRAVP------LDTLQKLLMRAPQLVDL-GIGSFVYDPSSEAYIKLKATLVKCKSIRSLS-GFLEVVPCCLSAIHPV 283 (570)
Q Consensus 212 L~l~~~~~------~~~l~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~~~~~~~~~l~~~~~~ 283 (570)
|.++.+.. +.++...+..+++|+.+ .+...... .+......+++|++|. ....+++..+..+...
T Consensus 240 L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~ 312 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ 312 (594)
T ss_dssp EECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTT
T ss_pred cccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhc
Confidence 99887642 34466677889999998 44332211 1222344678899888 4444777777777889
Q ss_pred CCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecc----------ccchhhHHHHHhcCCCCceeecccCCCCCCCcC
Q 008325 284 CQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILD----------SIGDRGLGVVAFTCKELQELRVFPSGVDNAAVT 353 (570)
Q Consensus 284 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~ 353 (570)
+++|++|++++| +++.++..+...+++|+.|++.+ ..++.++..+...+++|++|.+. ++.++
T Consensus 313 ~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-----~~~l~ 385 (594)
T 2p1m_B 313 CPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-----CRQMT 385 (594)
T ss_dssp CTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-----ESCCC
T ss_pred CCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-----cCCcC
Confidence 999999999988 77888888888999999999932 36777888888889999999877 88999
Q ss_pred HHHHHHHHccChhhHHH-HH-----hcccCC----hHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhc
Q 008325 354 EEGLVAISAGCPKLHSL-LY-----FCQQMT----NAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQS 423 (570)
Q Consensus 354 ~~~l~~l~~~~~~L~~L-l~-----~~~~l~----~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 423 (570)
+.++..+...+++|+.| +. .|..++ +.++..+...+++|+.|++++ .++ +.++..+...
T Consensus 386 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-------~l~----~~~~~~l~~~ 454 (594)
T 2p1m_B 386 NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-------LLT----DKVFEYIGTY 454 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-------SCC----HHHHHHHHHH
T ss_pred HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-------ccc----HHHHHHHHHh
Confidence 99999998889999999 76 578888 788888888999999999954 466 8888888888
Q ss_pred CccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccccc
Q 008325 424 CKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMR 502 (570)
Q Consensus 424 ~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (570)
+++|+.|++++ .+++.++..++..+++|+.|++++|.+++.++..++..+++|++|++++|++++.++..+...+|+|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 99999999998 88999999998889999999999999999999988888999999999999999998877778899998
Q ss_pred EEEeeccc
Q 008325 503 SLWMSSCE 510 (570)
Q Consensus 503 ~L~l~~~~ 510 (570)
...+..+.
T Consensus 535 i~~~~~~~ 542 (594)
T 2p1m_B 535 VEVIDERG 542 (594)
T ss_dssp EEEECSSS
T ss_pred EEEecCCC
Confidence 77776663
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.98 E-value=2.4e-31 Score=279.12 Aligned_cols=416 Identities=19% Similarity=0.195 Sum_probs=329.5
Q ss_pred HHHHhhCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCC-CCEEEeCCC-ccCHHHHHHHHhhCCCccEEE
Q 008325 55 ERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVG-LEELRLKRM-VVSDDCLELLSRSFVNFKSLV 132 (570)
Q Consensus 55 ~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~ 132 (570)
..+...+++|++|+++++. +. +..+..+...+++ |++|++++| .+++..+..+...+++|++|+
T Consensus 105 ~~l~~~~~~L~~L~L~~~~-i~-------------~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 170 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMI-VS-------------DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170 (592)
T ss_dssp HHHHHHCTTCCEEEEESCB-CC-------------HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEE
T ss_pred HHHHhhCCCCCeEEeeccE-ec-------------HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEE
Confidence 4566799999999999652 22 2223455555666 999999999 588888888888999999999
Q ss_pred ecCCC--CCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCc
Q 008325 133 LVSCE--GFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLK 210 (570)
Q Consensus 133 l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 210 (570)
+.+|. ......+..+...+++|++|+++++.+.......+..+...+++|++|+++.+. . ..+......+++|+
T Consensus 171 L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~--~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE--I--LELVGFFKAAANLE 246 (592)
T ss_dssp CTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB--G--GGGHHHHHHCTTCC
T ss_pred CccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc--H--HHHHHHHhhhhHHH
Confidence 99884 123344667778999999999999987644445566666678899999999662 2 23556677899999
Q ss_pred eeecCCCCCc---hhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCccccc-CCcccChhhHHhHhhhCCC
Q 008325 211 SLRLNRAVPL---DTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLS-GFLEVVPCCLSAIHPVCQN 286 (570)
Q Consensus 211 ~L~l~~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~~~~~~~~~l~~~~~~~~~ 286 (570)
.|.++..... ......+..+++|+.+++....... +...+..+++|++|. ....+.+..+..+...+++
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-------MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT-------GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccchhH-------HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 9999854322 1223334567788888776643221 223455678888887 4444777777777788999
Q ss_pred CCEEecCCCCCCChHHHHHHHhcCCCCCEEEecc------------ccchhhHHHHHhcCCCCceeecccCCCCCCCcCH
Q 008325 287 LTSLNLSYAPGIHGNELIKLIRFCRKLERLWILD------------SIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTE 354 (570)
Q Consensus 287 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 354 (570)
|++|++++ .+.+.++..++..|++|++|++.+ ..++.++..+...|++|++|+++ ++.+++
T Consensus 320 L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-----~~~l~~ 392 (592)
T 3ogk_B 320 LEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-----VSDITN 392 (592)
T ss_dssp CCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-----ESCCCH
T ss_pred CCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-----cCCccH
Confidence 99999983 378888888889999999999994 36777888888889999999998 889999
Q ss_pred HHHHHHHccChhhHHH-HH---hcccCCh----HHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCcc
Q 008325 355 EGLVAISAGCPKLHSL-LY---FCQQMTN----AALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKR 426 (570)
Q Consensus 355 ~~l~~l~~~~~~L~~L-l~---~~~~l~~----~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 426 (570)
.++..+...+++|+.| +. .|+.+++ +++..+...|++|+.|++++|.. .++ +.++..+...+++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~----~l~----~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG----GLT----DLGLSYIGQYSPN 464 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG----GCC----HHHHHHHHHSCTT
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC----Ccc----HHHHHHHHHhCcc
Confidence 9999998889999999 65 3677876 57888888899999999987642 467 8888888899999
Q ss_pred CcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEE
Q 008325 427 LRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLW 505 (570)
Q Consensus 427 L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 505 (570)
|+.|++++ .+++.++..+...+++|++|++++|.+++.++..++..+++|++|++++|++++.++..+...+|.+....
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEE
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999998 88999999998999999999999999999999999899999999999999999988776778888887776
Q ss_pred eeccc
Q 008325 506 MSSCE 510 (570)
Q Consensus 506 l~~~~ 510 (570)
+...+
T Consensus 545 ~~~~~ 549 (592)
T 3ogk_B 545 IPSRR 549 (592)
T ss_dssp ECCC-
T ss_pred ecCcc
Confidence 66653
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.5e-29 Score=252.29 Aligned_cols=388 Identities=17% Similarity=0.180 Sum_probs=271.0
Q ss_pred HHHHHhhCCCCCEEEeCCCccCHHHHHHHH---hhCCCccEEEecCCCCCChHHHHHHHHhCC----CCCEEeccccccc
Q 008325 93 VEALAKSRVGLEELRLKRMVVSDDCLELLS---RSFVNFKSLVLVSCEGFTTDGLAAIAANCR----YLRELDLQEIEVD 165 (570)
Q Consensus 93 l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~----~L~~L~l~~~~~~ 165 (570)
+..+...+++|++|++++|.+++.....+. ..+++|++|+++++ .+++.++..+...++ +|++|++++|.+.
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 345566778888888888888876554443 34688888888876 577777777776666 6888888888877
Q ss_pred cccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHh----CCCCceeecCCCCCch----hHHHHHhhCCCceeec
Q 008325 166 DNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVAR----SPNLKSLRLNRAVPLD----TLQKLLMRAPQLVDLG 237 (570)
Q Consensus 166 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~----~l~~~~~~~~~L~~L~ 237 (570)
+.+...+......+++|++|+++++ .++..+...+... .++|++|++++|.-.. .+...+..+++|++|.
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDN--LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHccCCceeEEECCCC--cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 7665555555667778888888866 4555555544432 3468888888774221 3455566667777776
Q ss_pred CcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhh----hCCCCCEEecCCCCCCChHH---HHHHHhcC
Q 008325 238 IGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHP----VCQNLTSLNLSYAPGIHGNE---LIKLIRFC 310 (570)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~~~---l~~l~~~~ 310 (570)
++... +.+.....+.. ..++|++|++++|. +++.+ +...+..+
T Consensus 177 L~~n~-----------------------------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 177 VSNND-----------------------------INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASK 226 (461)
T ss_dssp CCSSB-----------------------------CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHC
T ss_pred CcCCC-----------------------------cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhC
Confidence 65432 23333333322 34588888888886 76654 34445567
Q ss_pred CCCCEEEeccc-cchhhHHHHH----hcCCCCceeecccCCCCCCCcCHHHHHHHHc---cChhhHHHHHhcccCChHHH
Q 008325 311 RKLERLWILDS-IGDRGLGVVA----FTCKELQELRVFPSGVDNAAVTEEGLVAISA---GCPKLHSLLYFCQQMTNAAL 382 (570)
Q Consensus 311 ~~L~~L~l~~~-~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~---~~~~L~~Ll~~~~~l~~~~~ 382 (570)
++|+.|+++++ +++.++..+. ..+++|++|+++ .+.+++.++..+.. .+++|+.|....+.+++.+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~-----~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW-----ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-----TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc-----CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 88888888876 4444444333 246788888888 55788777544433 46777777444456777766
Q ss_pred HHHHhc----CCCCceeeeeeecCCCCCCCCCCcchhh---HHHHHhcCccCcEEecCC-cccHHHHHHHHhc----ccc
Q 008325 383 ITVAKN----NSNFTRFRLCILDREKPDPVTMQPLDEG---FGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMY----AEQ 450 (570)
Q Consensus 383 ~~l~~~----~~~L~~L~l~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~----~~~ 450 (570)
..+... .++|+.|++++| .++ +.+ +...+..+++|++|++++ .+++.+...++.. .++
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n------~l~----~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSC------SFT----AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS------CCB----GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHhccCCccceeeEcCCC------CCc----hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 666543 368999999887 465 443 445567789999999998 8888888777653 569
Q ss_pred cceeecccCCCChHHHHHHH---hcCccCceEEecCCCCChHHHHHHHhccc----cccEEEeecccC---ChhHHHHHH
Q 008325 451 LEMLSIAFAGNSDKGMLYVL---NGCKKLRKLEIRDSPFGNTALLTDVGKYE----TMRSLWMSSCEV---TLGGCQTLA 520 (570)
Q Consensus 451 L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~i---~~~~~~~l~ 520 (570)
|+.|++++|.+++.++..+. ..+++|++|++++|++++.++..+.+.++ +|+.|.+.++.+ ..+.++.+.
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~ 451 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 451 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHh
Confidence 99999999999987766654 34899999999999999988777666554 588888888754 456778888
Q ss_pred hhCCceEE
Q 008325 521 KKMPRLNV 528 (570)
Q Consensus 521 ~~~p~~~~ 528 (570)
+..|.+++
T Consensus 452 ~~~p~l~i 459 (461)
T 1z7x_W 452 KDKPSLRV 459 (461)
T ss_dssp HHCTTSEE
T ss_pred ccCCCcEe
Confidence 88999875
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.1e-27 Score=239.90 Aligned_cols=377 Identities=17% Similarity=0.164 Sum_probs=278.7
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHH---HHHHHhCCCCCEEeccccccccccccccccccC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGL---AAIAANCRYLRELDLQEIEVDDNRGQWISCFPD 177 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 177 (570)
++|++|+++++.+++.....+...+++|++|++++| .++..+. ......+++|++|++++|.+.+.+...+.....
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578999999999999888877778899999999988 5777644 344567899999999999887766555544332
Q ss_pred -CCCcccEEEeccccCCCCH---HHHHHHHHhCCCCceeecCCCCCchh-HHHHH----hhCCCceeecCcccccCCChH
Q 008325 178 -SCTSLVSLNFSCLKGEINL---TALERLVARSPNLKSLRLNRAVPLDT-LQKLL----MRAPQLVDLGIGSFVYDPSSE 248 (570)
Q Consensus 178 -~~~~L~~L~l~~~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~-l~~~~----~~~~~L~~L~l~~~~~~~~~~ 248 (570)
..++|++|+++++ .++. ..+......+++|++|+++++.-... ...+. ...++|++|.+..+.
T Consensus 82 ~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS------ 153 (461)
T ss_dssp STTCCCCEEECTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC------
T ss_pred hCCCceeEEEccCC--CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC------
Confidence 2237999999977 4443 34556667788999999998862211 22111 124467777665432
Q ss_pred HHHHHHHHHhhcCCcccccCCcccChhh---HHhHhhhCCCCCEEecCCCCCCChHHHHHHHh----cCCCCCEEEeccc
Q 008325 249 AYIKLKATLVKCKSIRSLSGFLEVVPCC---LSAIHPVCQNLTSLNLSYAPGIHGNELIKLIR----FCRKLERLWILDS 321 (570)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~ 321 (570)
+.+.. +......+++|++|+++++. +++.+...+.. ..++|+.|++.++
T Consensus 154 -----------------------l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 209 (461)
T 1z7x_W 154 -----------------------LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC 209 (461)
T ss_dssp -----------------------CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred -----------------------CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC
Confidence 23322 33344568899999999998 88877766654 3569999999987
Q ss_pred -cchhh---HHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHc----cChhhHHHHHhcccCChHHHHHHH---hcCC
Q 008325 322 -IGDRG---LGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISA----GCPKLHSLLYFCQQMTNAALITVA---KNNS 390 (570)
Q Consensus 322 -~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~----~~~~L~~Ll~~~~~l~~~~~~~l~---~~~~ 390 (570)
+++.+ +......+++|++|+++ .+.+++.++..+.. .+++|+.|....+.+++.++..+. ..++
T Consensus 210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls-----~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVASKASLRELALG-----SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp CCBTTHHHHHHHHHHHCTTCCEEECC-----SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHhCCCccEEecc-----CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 44444 33444578999999999 56888888776654 478899993334488888755444 3689
Q ss_pred CCceeeeeeecCCCCCCCCCCcchhhHHHHHh----cCccCcEEecCC-cccHHHHHHHH---hcccccceeecccCCCC
Q 008325 391 NFTRFRLCILDREKPDPVTMQPLDEGFGAIVQ----SCKRLRRLSLSG-LLTDQVFLYIG---MYAEQLEMLSIAFAGNS 462 (570)
Q Consensus 391 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~L~~L~l~~-~i~~~~~~~l~---~~~~~L~~L~l~~~~i~ 462 (570)
+|++|+++++ .++ +.+...+.. ..++|++|++++ .+++.+...+. ..+++|+.|++++|.++
T Consensus 285 ~L~~L~Ls~n------~i~----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 285 SLKELSLAGN------ELG----DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp TCCEEECTTC------CCH----HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CcceEECCCC------CCc----hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 9999999877 566 666555544 336999999998 77877655544 45799999999999999
Q ss_pred hHHHHHHHhc----CccCceEEecCCCCChHHH---HHHHhccccccEEEeecccCChhHHHHHHhhCCc
Q 008325 463 DKGMLYVLNG----CKKLRKLEIRDSPFGNTAL---LTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPR 525 (570)
Q Consensus 463 ~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~ 525 (570)
+.+...+... +++|++|++++|.+++.++ ...+..+++|+.|++++|++++.++..+.+.+|.
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 9888877654 6799999999999998653 3456789999999999999999999999876654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=2.6e-25 Score=215.66 Aligned_cols=166 Identities=20% Similarity=0.261 Sum_probs=94.4
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh--cccceEEeccccccchHHHHhhC--CCCceeeeCCCCCccc
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER--LSRQSVFIGNCYAISPERVIGRF--PGLKSLTLKGKPHFAD 77 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~--~~~~~l~~~~~~~~~~~~l~~~~--~~l~~l~l~~~~~~~~ 77 (570)
+++||+|++.+||+||+ .+|+.++++|||+|++++. ..|..+++..... . .....++ ++++.+++.++..- .
T Consensus 9 ~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~-~-~~~~~~~~~~~l~~L~l~~n~l~-~ 84 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNL-H-PDVTGRLLSQGVIAFRCPRSFMD-Q 84 (336)
T ss_dssp SSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBC-C-HHHHHHHHHTTCSEEECTTCEEC-S
T ss_pred hhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccC-C-HHHHHhhhhccceEEEcCCcccc-c
Confidence 68899999999999999 8999999999999999974 3345555543221 1 2222333 45566655533211 0
Q ss_pred CCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEE
Q 008325 78 FNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLREL 157 (570)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L 157 (570)
..+. ...+++|++|++++|.+++..+..+...+++|++|++++| .+++.....+. .+++|++|
T Consensus 85 --~~~~-------------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L 147 (336)
T 2ast_B 85 --PLAE-------------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRL 147 (336)
T ss_dssp --CCCS-------------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEE
T ss_pred --cchh-------------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEE
Confidence 0000 0123555555555555555444444444555555555554 34444333332 35555555
Q ss_pred eccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCC
Q 008325 158 DLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRA 217 (570)
Q Consensus 158 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 217 (570)
++++|. .++...+......+++|++|++++|
T Consensus 148 ~L~~~~-----------------------------~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCS-----------------------------GFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCB-----------------------------SCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred ECCCCC-----------------------------CCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 555441 2344455555666777777777766
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=4e-20 Score=179.92 Aligned_cols=303 Identities=17% Similarity=0.118 Sum_probs=174.3
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
+++|++|+++++.+.+. ..+. .+++|++|+++++ .++... . ...+++|++|++++|.+.+.. . ...+
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~-~~~~L~~L~l~~n-~i~~~~--~-~~~l~~L~~L~L~~n~i~~~~--~----~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIE-YLTNLEYLNLNGN-QITDIS--P-LSNLVKLTNLYIGTNKITDIS--A----LQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGG-GCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCG--G----GTTC
T ss_pred cccccEEEEeCCccccc--hhhh-hcCCccEEEccCC-ccccch--h-hhcCCcCCEEEccCCcccCch--H----HcCC
Confidence 35666666666644331 1122 4566666666655 233211 1 335666666666666554321 1 2344
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
++|++|+++++. +.. +.. ...+++|+.|+++++.....+.. +..+++|+.|.+..+....
T Consensus 110 ~~L~~L~l~~n~--i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-------------- 169 (347)
T 4fmz_A 110 TNLRELYLNEDN--ISD--ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-------------- 169 (347)
T ss_dssp TTCSEEECTTSC--CCC--CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCC--------------
T ss_pred CcCCEEECcCCc--ccC--chh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCC--------------
Confidence 566666666441 111 011 34456677777666643222211 3444455555443322110
Q ss_pred cCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCce
Q 008325 260 CKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQE 339 (570)
Q Consensus 260 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 339 (570)
+ .. ...+++|++|+++++. +.+... +..+++|+.|++.++....... ...+++|++
T Consensus 170 ------------~-----~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 225 (347)
T 4fmz_A 170 ------------V-----TP-IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225 (347)
T ss_dssp ------------C-----GG-GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred ------------c-----hh-hccCCCCCEEEccCCc-cccccc---ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence 0 00 3456678888887776 544322 3566777777777652211111 346677888
Q ss_pred eecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHH
Q 008325 340 LRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGA 419 (570)
Q Consensus 340 L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~ 419 (570)
|+++ .+.++... . ...+++|+.|+++++. ++.. .
T Consensus 226 L~l~-----~n~l~~~~----------------------~------~~~l~~L~~L~l~~n~------l~~~-------~ 259 (347)
T 4fmz_A 226 LKIG-----NNKITDLS----------------------P------LANLSQLTWLEIGTNQ------ISDI-------N 259 (347)
T ss_dssp EECC-----SSCCCCCG----------------------G------GTTCTTCCEEECCSSC------CCCC-------G
T ss_pred EEcc-----CCccCCCc----------------------c------hhcCCCCCEEECCCCc------cCCC-------h
Confidence 8887 22332210 0 2367889999888773 4421 1
Q ss_pred HHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcc
Q 008325 420 IVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKY 498 (570)
Q Consensus 420 ~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 498 (570)
.+..+++|+.|++++ .+++. .....+++|+.|++++|.++......+ ..+++|++|++++|++++... +..+
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~~l 332 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP---LASL 332 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG---GGGC
T ss_pred hHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC---hhhh
Confidence 256778899999988 55543 123557899999999999877666555 678999999999998776542 5789
Q ss_pred ccccEEEeecccCC
Q 008325 499 ETMRSLWMSSCEVT 512 (570)
Q Consensus 499 ~~L~~L~l~~~~i~ 512 (570)
++|+.|++++|+|+
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 99999999999875
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=6.2e-19 Score=173.96 Aligned_cols=207 Identities=14% Similarity=0.170 Sum_probs=135.0
Q ss_pred hCCCCCEEecCCCCCCChHH---HHHHHhcCCCCCEEEeccc-cchhhHHHH---HhcC---------CCCceeecccCC
Q 008325 283 VCQNLTSLNLSYAPGIHGNE---LIKLIRFCRKLERLWILDS-IGDRGLGVV---AFTC---------KELQELRVFPSG 346 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~-~~~~~~~~~---~~~~---------~~L~~L~l~~~~ 346 (570)
.+++|++|+++++. +++.+ +...+..+++|+.|++.++ +++.+...+ ...+ ++|++|+++
T Consensus 92 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~--- 167 (386)
T 2ca6_A 92 KCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--- 167 (386)
T ss_dssp TCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC---
T ss_pred hCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC---
Confidence 34455555555554 44432 2223345555555555554 222222211 1122 788888888
Q ss_pred CCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH----Hh
Q 008325 347 VDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI----VQ 422 (570)
Q Consensus 347 ~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~----~~ 422 (570)
.+.+++.++..++. ....+++|+.|++++| .++ +.++..+ +.
T Consensus 168 --~n~l~~~~~~~l~~----------------------~l~~~~~L~~L~L~~n------~l~----~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 168 --RNRLENGSMKEWAK----------------------TFQSHRLLHTVKMVQN------GIR----PEGIEHLLLEGLA 213 (386)
T ss_dssp --SSCCTGGGHHHHHH----------------------HHHHCTTCCEEECCSS------CCC----HHHHHHHHHTTGG
T ss_pred --CCCCCcHHHHHHHH----------------------HHHhCCCcCEEECcCC------CCC----HhHHHHHHHHHhh
Confidence 55566555443221 2236778888888877 566 6665444 34
Q ss_pred cCccCcEEecCC-cccHHHHHHHH---hcccccceeecccCCCChHHHHHHHhc-----CccCceEEecCCCCChHHHH-
Q 008325 423 SCKRLRRLSLSG-LLTDQVFLYIG---MYAEQLEMLSIAFAGNSDKGMLYVLNG-----CKKLRKLEIRDSPFGNTALL- 492 (570)
Q Consensus 423 ~~~~L~~L~l~~-~i~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~~~- 492 (570)
.+++|+.|+|++ .+++.+...+. ..+++|+.|++++|.+++.+...+... +++|+.|+|++|.+++.++.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 778899999988 77776665554 457899999999999988877665543 78999999999999986433
Q ss_pred --HHH-hccccccEEEeecccCChhH--HHHHHhhCCceE
Q 008325 493 --TDV-GKYETMRSLWMSSCEVTLGG--CQTLAKKMPRLN 527 (570)
Q Consensus 493 --~~~-~~~~~L~~L~l~~~~i~~~~--~~~l~~~~p~~~ 527 (570)
..+ .++++|+.|++++|+++..+ +..+...+|.++
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 233 56899999999999988766 577777666544
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=4.1e-23 Score=216.98 Aligned_cols=85 Identities=18% Similarity=0.075 Sum_probs=47.1
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
.+++|++|++++|.++......+. .+++|++|++.++. ++...... ...+++|++|++++|.+.......+. .
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~-i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~----~ 151 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTG-ISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGF----P 151 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSC-CSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTC----C
T ss_pred CccccCeeeCCCCcccccChhhhc-ccccccEeeccccC-cccCCcch-hccCCcccEEECCCCcccccCccccc----C
Confidence 456777777777755432222222 45677777777663 33311111 23677777777777765543222221 1
Q ss_pred CCcccEEEeccc
Q 008325 179 CTSLVSLNFSCL 190 (570)
Q Consensus 179 ~~~L~~L~l~~~ 190 (570)
+++|+.|+++.+
T Consensus 152 l~~L~~L~L~~n 163 (606)
T 3t6q_A 152 TEKLKVLDFQNN 163 (606)
T ss_dssp CTTCCEEECCSS
T ss_pred CcccCEEEcccC
Confidence 457777777754
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2.6e-23 Score=218.48 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=40.1
Q ss_pred hcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccc
Q 008325 422 QSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYET 500 (570)
Q Consensus 422 ~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 500 (570)
..+++|+.|++++ .++...... ...+++|+.|++++|.++......+ ..+++| .|++++|.++.... ..+..+++
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L-~L~L~~N~l~~~~~-~~~~~l~~ 548 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEAL-SHLKGI-YLNLASNHISIILP-SLLPILSQ 548 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGG-TTCCSC-EEECCSSCCCCCCG-GGHHHHHT
T ss_pred ccCCCccEEECCCCccCccChhh-hccccCCCEEECCCCccCcCChhHh-Cccccc-EEECcCCcccccCH-hhcccCCC
Confidence 3455555555554 322211111 1234555566665555544333323 345555 55555555443211 22344556
Q ss_pred ccEEEeecccC
Q 008325 501 MRSLWMSSCEV 511 (570)
Q Consensus 501 L~~L~l~~~~i 511 (570)
|+.|++++|++
T Consensus 549 L~~L~l~~N~~ 559 (606)
T 3t6q_A 549 QRTINLRQNPL 559 (606)
T ss_dssp SSEEECTTCCE
T ss_pred CCEEeCCCCCc
Confidence 66666666654
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=2e-23 Score=224.27 Aligned_cols=374 Identities=17% Similarity=0.165 Sum_probs=193.6
Q ss_pred hhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHH--HHHhCCCCCEEeccccccccccccccccc
Q 008325 98 KSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAA--IAANCRYLRELDLQEIEVDDNRGQWISCF 175 (570)
Q Consensus 98 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 175 (570)
..+++|++|++++|.+.......+...+++|++|+++++ .++...... ....+++|++|++++|.+.....
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------ 195 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVD------ 195 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB------
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCCcccccCC------
Confidence 356777777777764432211112124567777777766 343222222 23477888888888876553321
Q ss_pred cCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHH
Q 008325 176 PDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKA 255 (570)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 255 (570)
...+++|++|+++++. +.. .+.. ...+++|++|+++++.-....+..+..+++|+.|.+..+.......
T Consensus 196 ~~~l~~L~~L~Ls~n~--l~~-~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------- 264 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNN--FST-GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP------- 264 (768)
T ss_dssp CTTCTTCCEEECCSSC--CCS-CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC-------
T ss_pred cccCCcCCEEECcCCc--CCC-CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC-------
Confidence 1455688888888552 111 0111 3456788888888776444566677778888888776654221000
Q ss_pred HHhhcCCccccc-CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccch-hhHHHHHhc
Q 008325 256 TLVKCKSIRSLS-GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGD-RGLGVVAFT 333 (570)
Q Consensus 256 ~~~~~~~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~~~~~~ 333 (570)
...+++|+.|. ....+.......+...+++|++|+++++. ++.... ..+..+++|+.|++.++.-. ..-......
T Consensus 265 -~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~ 341 (768)
T 3rgz_A 265 -PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH-FYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLK 341 (768)
T ss_dssp -CCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE-EEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred -ccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc-CCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhc
Confidence 01344555554 22222211111222234566666666554 322111 11244566666666554211 111111224
Q ss_pred CCCCceeecccCCCCCCCcCH---HHHHHH----------------------Hc-cChhhHHH-HHhcccCChHHHHHHH
Q 008325 334 CKELQELRVFPSGVDNAAVTE---EGLVAI----------------------SA-GCPKLHSL-LYFCQQMTNAALITVA 386 (570)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~l~~---~~l~~l----------------------~~-~~~~L~~L-l~~~~~l~~~~~~~l~ 386 (570)
+++|++|+++ .+.++. ..+..+ .. .+++|+.| +..+ .++......+
T Consensus 342 l~~L~~L~Ls-----~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l- 414 (768)
T 3rgz_A 342 MRGLKVLDLS-----FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTL- 414 (768)
T ss_dssp CTTCCEEECC-----SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGG-
T ss_pred CCCCCEEeCc-----CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHH-
Confidence 5556666655 222221 111110 00 03345545 2222 2221111112
Q ss_pred hcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHH
Q 008325 387 KNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKG 465 (570)
Q Consensus 387 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 465 (570)
..+++|+.|+++++. ++. .+...+..+++|+.|++++ .++..... ....+++|+.|++++|.++...
T Consensus 415 ~~l~~L~~L~Ls~N~------l~~-----~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 415 SNCSELVSLHLSFNY------LSG-----TIPSSLGSLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp GGCTTCCEEECCSSE------EES-----CCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCC
T ss_pred hcCCCCCEEECcCCc------ccC-----cccHHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCceEEEecCCcccCcC
Confidence 256777777776653 221 0111245677888888876 43322111 1234678999999998875322
Q ss_pred HHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 466 MLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 466 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
... ..++++|++|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 483 p~~-l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 483 PSG-LSNCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEE
T ss_pred CHH-HhcCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccC
Confidence 222 3568899999999997764322 345788999999999998753
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=1.9e-22 Score=211.88 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=89.5
Q ss_pred cCCCCCEEEeccccchhh--HHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHH-HHhcccCChHHHHHH
Q 008325 309 FCRKLERLWILDSIGDRG--LGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSL-LYFCQQMTNAALITV 385 (570)
Q Consensus 309 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L-l~~~~~l~~~~~~~l 385 (570)
.+++|+.|++.++.-... .......+++|++|+++ .+.++... .....+++|+.| +.++ .++.......
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~-----~n~l~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 419 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS-----FNGAIIMS--ANFMGLEELQHLDFQHS-TLKRVTEFSA 419 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC-----SCSEEEEC--CCCTTCTTCCEEECTTS-EEESTTTTTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC-----CCccccch--hhccCCCCCCeeECCCC-ccCCccChhh
Confidence 445566666655411110 11222355666666666 22232211 111225556655 3332 2222211111
Q ss_pred HhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChH
Q 008325 386 AKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDK 464 (570)
Q Consensus 386 ~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 464 (570)
...+++|+.|+++++. ++.. ....+..+++|+.|++++ .+++..+......+++|+.|++++|.++..
T Consensus 420 ~~~l~~L~~L~l~~n~------l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTN------TKID-----FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp TTTCTTCCEEECTTSC------CEEC-----CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred hhccccCCEEECcCCC------CCcc-----chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 2256677777766653 2210 111244566777777766 444322222223456777777777776433
Q ss_pred HHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 465 GMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 465 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
....+ ..+++|++|++++|.+++... ..+..+++|+.|++++|+++
T Consensus 489 ~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 489 SWGVF-DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTTT-TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCC
T ss_pred Chhhh-cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCc
Confidence 22222 456777777777776655321 23456677777777777654
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=6.1e-20 Score=185.83 Aligned_cols=322 Identities=16% Similarity=0.108 Sum_probs=171.2
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
.+++|++|+++++.+++... ...+++|++|++.++. ++... . ...+++|++|++++|.+.+... ...
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~------~~~ 132 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQ-IADIT--P-LANLTNLTGLTLFNNQITDIDP------LKN 132 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCGG------GTT
T ss_pred hhcCCCEEECCCCccCCchh---hhccccCCEEECCCCc-cccCh--h-hcCCCCCCEEECCCCCCCCChH------HcC
Confidence 45677777777765544321 2356677777776653 32211 1 3366777777777766544321 234
Q ss_pred CCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHh
Q 008325 179 CTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLV 258 (570)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (570)
+++|++|+++.+. +.. +. ....+++|+.|.+++.. ..+.. +..+++|+.|++........ ..+.
T Consensus 133 l~~L~~L~l~~n~--l~~--~~-~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~n~l~~~--------~~l~ 196 (466)
T 1o6v_A 133 LTNLNRLELSSNT--ISD--IS-ALSGLTSLQQLSFGNQV--TDLKP-LANLTTLERLDISSNKVSDI--------SVLA 196 (466)
T ss_dssp CTTCSEEEEEEEE--ECC--CG-GGTTCTTCSEEEEEESC--CCCGG-GTTCTTCCEEECCSSCCCCC--------GGGG
T ss_pred CCCCCEEECCCCc--cCC--Ch-hhccCCcccEeecCCcc--cCchh-hccCCCCCEEECcCCcCCCC--------hhhc
Confidence 5577777776441 111 01 13445667776665321 11111 44556666665544332110 0022
Q ss_pred hcCCccccc-CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCC
Q 008325 259 KCKSIRSLS-GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKEL 337 (570)
Q Consensus 259 ~~~~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 337 (570)
.+++|+.|. ....+.... . ...+++|++|+++++. +++.. .+..+++|+.|++.++.-..... ...+++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDIT--P-LGILTNLDELSLNGNQ-LKDIG---TLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp GCTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred cCCCCCEEEecCCcccccc--c-ccccCCCCEEECCCCC-cccch---hhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 223333332 111111100 0 2234455555555444 33211 12344455555554431111000 2234445
Q ss_pred ceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhH
Q 008325 338 QELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGF 417 (570)
Q Consensus 338 ~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~ 417 (570)
++|+++ .+.++.... ...+++|+.|+++++. ++..+.
T Consensus 268 ~~L~l~------------------------------~n~l~~~~~---~~~l~~L~~L~L~~n~------l~~~~~---- 304 (466)
T 1o6v_A 268 TELKLG------------------------------ANQISNISP---LAGLTALTNLELNENQ------LEDISP---- 304 (466)
T ss_dssp SEEECC------------------------------SSCCCCCGG---GTTCTTCSEEECCSSC------CSCCGG----
T ss_pred CEEECC------------------------------CCccCcccc---ccCCCccCeEEcCCCc------ccCchh----
Confidence 555554 122222111 2367899999998873 442111
Q ss_pred HHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHh
Q 008325 418 GAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVG 496 (570)
Q Consensus 418 ~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 496 (570)
+..+++|+.|++++ .+++... ...+++|+.|++++|.+++. .. ...+++|+.|++++|.+++... +.
T Consensus 305 ---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---~~ 372 (466)
T 1o6v_A 305 ---ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SS-LANLTNINWLSAGHNQISDLTP---LA 372 (466)
T ss_dssp ---GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCBCGG---GT
T ss_pred ---hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hh-hccCCCCCEEeCCCCccCccch---hh
Confidence 56789999999988 5544322 35688999999999998553 22 3568999999999998876542 67
Q ss_pred ccccccEEEeecccCCh
Q 008325 497 KYETMRSLWMSSCEVTL 513 (570)
Q Consensus 497 ~~~~L~~L~l~~~~i~~ 513 (570)
.+++|+.|++++|+++.
T Consensus 373 ~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeccCCcccC
Confidence 89999999999997654
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=3e-18 Score=169.00 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=129.3
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHH---HhcC---------CCCCEEEeccc-cchhhHHH---HHhcCCCCceeecccC
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKL---IRFC---------RKLERLWILDS-IGDRGLGV---VAFTCKELQELRVFPS 345 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~---------~~L~~L~l~~~-~~~~~~~~---~~~~~~~L~~L~l~~~ 345 (570)
..+++|++|++++|. +++.+...+ +..+ ++|+.|++.++ +++.++.. ....+++|++|+++
T Consensus 119 ~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~-- 195 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV-- 195 (386)
T ss_dssp HHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC--
T ss_pred HhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc--
Confidence 455677777777666 654433322 2233 67777777765 33344442 33467889999998
Q ss_pred CCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHH---HHHh
Q 008325 346 GVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFG---AIVQ 422 (570)
Q Consensus 346 ~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~---~~~~ 422 (570)
.+.+++.++..+.. .....+++|+.|+++++ .++ +.+.. ..+.
T Consensus 196 ---~n~l~~~g~~~l~~---------------------~~l~~~~~L~~L~Ls~n------~l~----~~g~~~l~~~l~ 241 (386)
T 2ca6_A 196 ---QNGIRPEGIEHLLL---------------------EGLAYCQELKVLDLQDN------TFT----HLGSSALAIALK 241 (386)
T ss_dssp ---SSCCCHHHHHHHHH---------------------TTGGGCTTCCEEECCSS------CCH----HHHHHHHHHHGG
T ss_pred ---CCCCCHhHHHHHHH---------------------HHhhcCCCccEEECcCC------CCC----cHHHHHHHHHHc
Confidence 55677666544322 01226788888888876 455 44433 3456
Q ss_pred cCccCcEEecCC-cccHHHHHHHHhc-----ccccceeecccCCCChHHHHHHH----hcCccCceEEecCCCCChHH--
Q 008325 423 SCKRLRRLSLSG-LLTDQVFLYIGMY-----AEQLEMLSIAFAGNSDKGMLYVL----NGCKKLRKLEIRDSPFGNTA-- 490 (570)
Q Consensus 423 ~~~~L~~L~l~~-~i~~~~~~~l~~~-----~~~L~~L~l~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~-- 490 (570)
.+++|++|+|++ .+++.+...++.. +++|+.|++++|.+++.++..+. .++++|++|++++|.+++.+
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~ 321 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 321 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHH
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhH
Confidence 778899999988 7888877665543 78999999999999886555443 44799999999999888766
Q ss_pred HHHHHhccccccEEEeecc
Q 008325 491 LLTDVGKYETMRSLWMSSC 509 (570)
Q Consensus 491 ~~~~~~~~~~L~~L~l~~~ 509 (570)
+..+...+++++.+.+...
T Consensus 322 ~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 322 VDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHHHTCCEECCC
T ss_pred HHHHHHHhhhcCcchhhhc
Confidence 5566777888887777554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=4.2e-20 Score=191.68 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=76.6
Q ss_pred hcCCCCceeecccCCCCCCCcCHHHHHHH--HccChhhHHHHHhcccCChHHH-HHHHhcCCCCceeeeeeecCCCCCCC
Q 008325 332 FTCKELQELRVFPSGVDNAAVTEEGLVAI--SAGCPKLHSLLYFCQQMTNAAL-ITVAKNNSNFTRFRLCILDREKPDPV 408 (570)
Q Consensus 332 ~~~~~L~~L~l~~~~~~~~~l~~~~l~~l--~~~~~~L~~Ll~~~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~i 408 (570)
..+++|++|+++ .+.+++...... ...+++|+.|....+.++.... ......+++|+.|+++++... .+
T Consensus 331 ~~l~~L~~L~Ls-----~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~l 402 (549)
T 2z81_A 331 QHLKSLEFLDLS-----ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PM 402 (549)
T ss_dssp HHCTTCCEEECC-----SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC---CC
T ss_pred hcCccccEEEcc-----CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc---cC
Confidence 356777777777 455555433221 2336677777333334443321 223446777777777766321 11
Q ss_pred CCCcchhhHHHHHhcCccCcEEecCC-cccHHH----------------HHHHHhcccccceeecccCCCChHHHHHHHh
Q 008325 409 TMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQV----------------FLYIGMYAEQLEMLSIAFAGNSDKGMLYVLN 471 (570)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~----------------~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 471 (570)
. . .+..+++|++|++++ .++.-. +..+...+++|+.|++++|.++. +... .
T Consensus 403 p----~-----~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~--ip~~-~ 470 (549)
T 2z81_A 403 P----D-----SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT--LPDA-S 470 (549)
T ss_dssp C----S-----CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS--CCCG-G
T ss_pred C----h-----hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCc--CCCc-c
Confidence 1 0 122344555555544 222100 00001235566666666665531 1111 2
Q ss_pred cCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 472 GCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 472 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
.+++|+.|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEECCSSCBC
T ss_pred cCccCCEEecCCCccCCcCH-HHHhcCcccCEEEecCCCcc
Confidence 35666666666665543221 23455666666666666543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=3.4e-21 Score=198.37 Aligned_cols=179 Identities=11% Similarity=0.166 Sum_probs=115.4
Q ss_pred CCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChH-HHHHHHhcC
Q 008325 311 RKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNA-ALITVAKNN 389 (570)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~-~~~~l~~~~ 389 (570)
++|+.|++.++.-.... +...+++|++|+++ .+.+++.....+ ..+++|+.|....+.++.- .+......+
T Consensus 302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls-----~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFS-----NNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQM 373 (520)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECC-----SSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTC
T ss_pred CceeEEEcCCCcccccc--chhhCCcccEEEeE-----CCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhC
Confidence 45777777665211100 01367889999998 445554222222 3478888884444556542 233334478
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
++|+.|+++++. ++. ......+..+++|+.|++++ .++......+ .++|+.|++++|.++. +..
T Consensus 374 ~~L~~L~Ls~N~------l~~----~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~~--ip~ 438 (520)
T 2z7x_B 374 KSLQQLDISQNS------VSY----DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKS--IPK 438 (520)
T ss_dssp TTCCEEECCSSC------CBC----CGGGCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCCC--CCG
T ss_pred CCCCEEECCCCc------CCc----ccccchhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCcccc--cch
Confidence 999999998874 432 01011245678999999988 6654332211 2699999999999862 322
Q ss_pred HHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
-...+++|++|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 439 ~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred hhhcCCCCCEEECCCCcCCccCH-HHhccCCcccEEECcCCCCcc
Confidence 22478999999999998875332 146789999999999998764
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=1.6e-22 Score=217.24 Aligned_cols=371 Identities=17% Similarity=0.164 Sum_probs=211.7
Q ss_pred hCCCCCEEEeCCCccCHHHHHH--HHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccccccccccc
Q 008325 99 SRVGLEELRLKRMVVSDDCLEL--LSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFP 176 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 176 (570)
.+++|++|++++|.++...... ....+++|++|+++++. ++... .. ..+++|++|++++|.+...... .
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~Ls~n~l~~~~~~-----l 219 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLDVSSNNFSTGIPF-----L 219 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEECCSSCCCSCCCB-----C
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEECcCCcCCCCCcc-----c
Confidence 5688999999998765433332 13467889999998774 22110 11 4788999999999876543222 3
Q ss_pred CCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHH
Q 008325 177 DSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKAT 256 (570)
Q Consensus 177 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 256 (570)
..+++|++|+++++ .+.. .+......+++|+.|+++++.-....+.. .+++|++|.+..+..... +...
T Consensus 220 ~~l~~L~~L~Ls~n--~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~------ip~~ 288 (768)
T 3rgz_A 220 GDCSALQHLDISGN--KLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE------IPDF 288 (768)
T ss_dssp TTCCSCCEEECCSS--CCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEES------CCCC
T ss_pred ccCCCCCEEECcCC--cCCC-cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCc------cCHH
Confidence 45668999999866 2321 12334466788999988887532222111 566777777765432200 0000
Q ss_pred H-hhcCCccccc-CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccc----hhhHHHH
Q 008325 257 L-VKCKSIRSLS-GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIG----DRGLGVV 330 (570)
Q Consensus 257 ~-~~~~~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~----~~~~~~~ 330 (570)
+ ..+++|+.|. ....+... .......+++|++|+++++. +....-...+..+++|+.|++.++.- ...+...
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred HHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 1 1134555554 11111111 11223345566666666654 33111112234556666666655411 1111111
Q ss_pred ----------------------H-hcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHh
Q 008325 331 ----------------------A-FTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAK 387 (570)
Q Consensus 331 ----------------------~-~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~ 387 (570)
. ..+++|++|+++ .+.++.... .....+++|+.|....+.++......+ .
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~-----~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~ 439 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ-----NNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSL-G 439 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC-----SSEEEEECC-GGGGGCTTCCEEECCSSEEESCCCGGG-G
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC-----CCccccccC-HHHhcCCCCCEEECcCCcccCcccHHH-h
Confidence 0 014556666666 333332211 112347888888333334433222223 3
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++.. +...+..+++|+.|++++ .++..... ....+++|+.|++++|.++....
T Consensus 440 ~l~~L~~L~L~~n~------l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 440 SLSKLRDLKLWLNM------LEGE-----IPQELMYVKTLETLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp GCTTCCEEECCSSC------CCSC-----CCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCCCEEECCCCc------ccCc-----CCHHHcCCCCceEEEecCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCC
Confidence 78999999998874 3311 112245789999999988 44432211 23458899999999999854322
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
..+ ..+++|++|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 508 ~~~-~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 508 KWI-GRLENLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGG-GGCTTCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEE
T ss_pred hHH-hcCCCCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccC
Confidence 223 568999999999998764322 34678999999999999764
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=4.2e-20 Score=191.73 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=45.9
Q ss_pred hcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCCh
Q 008325 422 QSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGN 488 (570)
Q Consensus 422 ~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 488 (570)
..+++|+.|++++ .++ .+.. ...+++|+.|++++|.++...... ...+++|+.|++++|++.-
T Consensus 448 ~~l~~L~~L~Ls~N~l~--~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK--TLPD-ASLFPVLLVMKISRNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCCTTCCEEECCSSCCS--SCCC-GGGCTTCCEEECCSSCCCCCCTTG-GGGCTTCCEEECCSSCBCC
T ss_pred ccCChhcEEECCCCccC--cCCC-cccCccCCEEecCCCccCCcCHHH-HhcCcccCEEEecCCCccC
Confidence 4688999999988 544 1222 235789999999999985432222 2668999999999997653
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=6.6e-18 Score=164.21 Aligned_cols=304 Identities=16% Similarity=0.149 Sum_probs=206.6
Q ss_pred hhCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCC
Q 008325 59 GRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEG 138 (570)
Q Consensus 59 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 138 (570)
..+++++++.+.++... +.. . ...+++|++|++++|.+++... ...+++|++|+++++ .
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~---------------~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n-~ 99 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQ---------------G-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTN-K 99 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCT---------------T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSS-C
T ss_pred hhcccccEEEEeCCccc-cch---------------h-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCC-c
Confidence 46688999999865432 110 1 2357999999999997765332 347899999999988 4
Q ss_pred CChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 139 FTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 139 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
++.. .. ...+++|++|++++|.+.+... ...+++|+.|+++++........ ...+++|+.|+++++.
T Consensus 100 i~~~--~~-~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 100 ITDI--SA-LQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESK 166 (347)
T ss_dssp CCCC--GG-GTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSC
T ss_pred ccCc--hH-HcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCC
Confidence 4432 22 3589999999999998765432 34567999999996631222211 4568899999999885
Q ss_pred CchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCC
Q 008325 219 PLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGI 298 (570)
Q Consensus 219 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 298 (570)
- ..... +..+++|+.|.+..+.... + .. ...+++|+.|+++++. +
T Consensus 167 ~-~~~~~-~~~l~~L~~L~l~~n~l~~--------------------------~-----~~-~~~l~~L~~L~l~~n~-l 211 (347)
T 4fmz_A 167 V-KDVTP-IANLTDLYSLSLNYNQIED--------------------------I-----SP-LASLTSLHYFTAYVNQ-I 211 (347)
T ss_dssp C-CCCGG-GGGCTTCSEEECTTSCCCC--------------------------C-----GG-GGGCTTCCEEECCSSC-C
T ss_pred c-CCchh-hccCCCCCEEEccCCcccc--------------------------c-----cc-ccCCCccceeecccCC-C
Confidence 2 22222 6678888888776533111 1 11 3467899999999887 6
Q ss_pred ChHHHHHHHhcCCCCCEEEecccc-chhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccC
Q 008325 299 HGNELIKLIRFCRKLERLWILDSI-GDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQM 377 (570)
Q Consensus 299 ~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l 377 (570)
.+... +..+++|+.|++.++. ..... ...+++|++|+++ .+.+++..
T Consensus 212 ~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~-----~n~l~~~~--------------------- 259 (347)
T 4fmz_A 212 TDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIG-----TNQISDIN--------------------- 259 (347)
T ss_dssp CCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECC-----SSCCCCCG---------------------
T ss_pred CCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECC-----CCccCCCh---------------------
Confidence 54332 4678999999998862 22111 4578999999999 33443210
Q ss_pred ChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeec
Q 008325 378 TNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSI 456 (570)
Q Consensus 378 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l 456 (570)
. ...+++|+.|+++++ .++.. ..+..+++|+.|++++ .+++.....+ ..+++|+.|++
T Consensus 260 ------~-~~~l~~L~~L~l~~n------~l~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L 318 (347)
T 4fmz_A 260 ------A-VKDLTKLKMLNVGSN------QISDI-------SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFL 318 (347)
T ss_dssp ------G-GTTCTTCCEEECCSS------CCCCC-------GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEEC
T ss_pred ------h-HhcCCCcCEEEccCC------ccCCC-------hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEc
Confidence 0 126789999999887 34422 1256789999999998 6666555544 34799999999
Q ss_pred ccCCCChHHHHHHHhcCccCceEEecCCCCC
Q 008325 457 AFAGNSDKGMLYVLNGCKKLRKLEIRDSPFG 487 (570)
Q Consensus 457 ~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 487 (570)
++|+++.... ...+++|++|++++|+++
T Consensus 319 ~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 319 SQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred cCCccccccC---hhhhhccceeehhhhccc
Confidence 9999855322 467899999999999875
No 21
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=4.6e-18 Score=164.57 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=185.6
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc-cchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHcc
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS-IGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAG 363 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~ 363 (570)
++++.|+++++. +.+.... ...+++|+.|++.++ +.+.++......+++|++|+++ .+.+++.....+..
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~-----~~~l~~~~~~~l~~- 140 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-----GLRLSDPIVNTLAK- 140 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT-----TCBCCHHHHHHHTT-
T ss_pred ccceEEEcCCcc-ccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc-----CcccCHHHHHHHhc-
Confidence 689999998765 4432211 236799999999987 4555577777889999999999 55788887777766
Q ss_pred ChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCc-cCcEEecCC---cccH
Q 008325 364 CPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCK-RLRRLSLSG---LLTD 438 (570)
Q Consensus 364 ~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~L~~L~l~~---~i~~ 438 (570)
+++|+.| +.+|..+++.++..+...+++|++|++++|. .++ +.++...+..++ +|++|++++ .+++
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----~l~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----DFT----EKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----TCC----HHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----CcC----hHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 9999999 7888789998888877899999999998874 466 677788889999 999999988 4777
Q ss_pred HHHHHHHhcccccceeecccCC-CChHHHHHHHhcCccCceEEecCC-CCChHHHHHHHhccccccEEEeecccCChhHH
Q 008325 439 QVFLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNGCKKLRKLEIRDS-PFGNTALLTDVGKYETMRSLWMSSCEVTLGGC 516 (570)
Q Consensus 439 ~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 516 (570)
..+......+++|+.|++++|. +++.+...+ ..+++|++|++++| .+++.++ ..+.++++|+.|++++| ++++++
T Consensus 212 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCTTCH
T ss_pred HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCHHHH
Confidence 8888888889999999999999 788877766 67899999999999 7777765 35578999999999999 999999
Q ss_pred HHHHhhCCceEE
Q 008325 517 QTLAKKMPRLNV 528 (570)
Q Consensus 517 ~~l~~~~p~~~~ 528 (570)
..+...+|.+++
T Consensus 289 ~~l~~~l~~L~l 300 (336)
T 2ast_B 289 QLLKEALPHLQI 300 (336)
T ss_dssp HHHHHHSTTSEE
T ss_pred HHHHhhCcceEE
Confidence 999999999885
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=4.3e-22 Score=209.20 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=68.9
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccc
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYE 499 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (570)
+..+++|+.|++++ .++..... ....+++|+.|++++|.+++..+......+++|+.|++++|.++.... ..+..++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 497 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLH 497 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCT
T ss_pred hhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccc
Confidence 45678888888877 43332111 124578899999999887653233333568999999999998876432 3457889
Q ss_pred cccEEEeecccCChhHHHHHHhhCCceE
Q 008325 500 TMRSLWMSSCEVTLGGCQTLAKKMPRLN 527 (570)
Q Consensus 500 ~L~~L~l~~~~i~~~~~~~l~~~~p~~~ 527 (570)
+|+.|++++|+++...-..+ ..++.++
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 524 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHY-NQLYSLS 524 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGT-TTCTTCC
T ss_pred cCCEEECCCCcCCCcCHHHc-cCCCcCC
Confidence 99999999998765332222 3345444
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=3.1e-19 Score=180.70 Aligned_cols=332 Identities=17% Similarity=0.164 Sum_probs=204.1
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
++++++|++.++.+..- ..+ ..+++|++|+++++. ++... . ...+++|++|++++|.+..... ...+
T Consensus 45 l~~l~~L~l~~~~i~~l--~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~------~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI--DGV-EYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQIADITP------LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred hccccEEecCCCCCccC--cch-hhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCCccccChh------hcCC
Confidence 36789999988865542 223 367899999999874 43322 1 4588999999999987665432 3456
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
++|++|+++++. +... .. ...+++|++|+++++. +..+. .+..+++|+.|.+......
T Consensus 112 ~~L~~L~L~~n~--l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~~~~--------------- 169 (466)
T 1o6v_A 112 TNLTGLTLFNNQ--ITDI--DP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQVTD--------------- 169 (466)
T ss_dssp TTCCEEECCSSC--CCCC--GG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEESCCC---------------
T ss_pred CCCCEEECCCCC--CCCC--hH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCcccC---------------
Confidence 699999998662 2211 11 4567899999988774 22222 2556677777765321110
Q ss_pred cCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCce
Q 008325 260 CKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQE 339 (570)
Q Consensus 260 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 339 (570)
... ...+++|++|+++++. +++.. .+..+++|+.|++.++.-..... ...+++|++
T Consensus 170 -----------------~~~-~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 225 (466)
T 1o6v_A 170 -----------------LKP-LANLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNNQISDITP--LGILTNLDE 225 (466)
T ss_dssp -----------------CGG-GTTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred -----------------chh-hccCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCCccccccc--ccccCCCCE
Confidence 001 2345566666666655 43321 13455666666666542111111 234566666
Q ss_pred eecccCCCCCCCcCHHHHHHHHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHH
Q 008325 340 LRVFPSGVDNAAVTEEGLVAISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFG 418 (570)
Q Consensus 340 L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~ 418 (570)
|+++ .+.+++.+ . ...+++|+.| +..+ .++.... ...+++|+.|+++++. ++..+
T Consensus 226 L~l~-----~n~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~------l~~~~------ 281 (466)
T 1o6v_A 226 LSLN-----GNQLKDIG--T-LASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGANQ------ISNIS------ 281 (466)
T ss_dssp EECC-----SSCCCCCG--G-GGGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSSC------CCCCG------
T ss_pred EECC-----CCCcccch--h-hhcCCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCCc------cCccc------
Confidence 6666 22333221 1 1235556655 3322 2322211 3478999999998874 44211
Q ss_pred HHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhc
Q 008325 419 AIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGK 497 (570)
Q Consensus 419 ~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (570)
. +..+++|+.|++++ .+++... ...+++|+.|++++|.+++... ...+++|++|++++|.+++. ..+..
T Consensus 282 ~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~ 351 (466)
T 1o6v_A 282 P-LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLAN 351 (466)
T ss_dssp G-GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTT
T ss_pred c-ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhcc
Confidence 1 56789999999988 4443221 3568999999999999855332 36799999999999988775 24678
Q ss_pred cccccEEEeecccCChhHHHHHHhhCCceE
Q 008325 498 YETMRSLWMSSCEVTLGGCQTLAKKMPRLN 527 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~ 527 (570)
+++|+.|++++|++++..- ...+|.++
T Consensus 352 l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 378 (466)
T 1o6v_A 352 LTNINWLSAGHNQISDLTP---LANLTRIT 378 (466)
T ss_dssp CTTCCEEECCSSCCCBCGG---GTTCTTCC
T ss_pred CCCCCEEeCCCCccCccch---hhcCCCCC
Confidence 9999999999999865432 34555554
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=7.2e-23 Score=213.66 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=67.2
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. +.. .....+..+++|+.|++++ .+++..+......+++|+.|++++|.++....
T Consensus 419 ~l~~L~~L~l~~n~------l~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 419 SLRNLIYLDISHTH------TRV-----AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp TCTTCCEEECTTSC------CEE-----CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCCCCEEeCcCCc------ccc-----cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh
Confidence 55666666666552 221 1112245667788888877 44432222223456788888888887754322
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
..+ ..+++|++|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 488 ~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAF-NSLSSLQVLNMASNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred hhh-hcccCCCEEeCCCCcCCCCCH-HHhhcccCCcEEEecCCccc
Confidence 223 457788888888886665432 24567788888888888654
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.74 E-value=3.2e-20 Score=197.63 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=37.2
Q ss_pred ccccceeecccCCCChH-HHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 448 AEQLEMLSIAFAGNSDK-GMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
+++|+.|++.+|.++.. ........+++|+.|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCGG
T ss_pred CcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh-hhhccccccCEEeCCCCCccc
Confidence 44555555555543211 111122456778888888876664321 234677888888888887654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=1.7e-19 Score=182.47 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=80.0
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++... ...+..+++|++|++++ .++..... ....+++|+.|++++|.++....
T Consensus 297 ~l~~L~~L~Ls~n~------l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 297 HFTDLEQLTLAQNE------INKID-----DNAFWGLTHLLKLNLSQNFLGSIDSR-MFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp TCTTCCEEECTTSC------CCEEC-----TTTTTTCTTCCEEECCSSCCCEECGG-GGTTCTTCCEEECCSSCCCEECT
T ss_pred cCCCCCEEECCCCc------ccccC-----hhHhcCcccCCEEECCCCccCCcChh-HhcCcccCCEEECCCCcccccCh
Confidence 67899999998774 33111 11245678999999988 54432211 22457899999999999855433
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
..+ ..+++|++|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 365 ~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 365 QSF-LGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred hhc-cccccccEEECCCCccccCCH-hHhccCCcccEEEccCCCccc
Confidence 333 568999999999998876432 345789999999999998754
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.72 E-value=4.5e-20 Score=189.98 Aligned_cols=389 Identities=12% Similarity=0.057 Sum_probs=190.5
Q ss_pred HhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccc-ccccccc
Q 008325 97 AKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNR-GQWISCF 175 (570)
Q Consensus 97 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~l~~~ 175 (570)
...+++|++|+++++.++......+. .+++|++|+++++ .++. +... .+++|++|++++|.+.... +..+
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~--- 111 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHN-KLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEF--- 111 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSS-CCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGG---
T ss_pred ccccccccEEecCCCccCCcChHHhh-cccCCCEEecCCC-ceee--cCcc--ccCCccEEeccCCccccccchhhh---
Confidence 34567777777777766543222233 4677777777766 3432 1111 5677777777777665422 1223
Q ss_pred cCCCCcccEEEeccccCCCCHHHHHHHHHhCCCC--ceeecCCCCC--chhHHHHH------------------------
Q 008325 176 PDSCTSLVSLNFSCLKGEINLTALERLVARSPNL--KSLRLNRAVP--LDTLQKLL------------------------ 227 (570)
Q Consensus 176 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~~l~~~~------------------------ 227 (570)
..+++|++|+++++ .+.... ...+++| +.|+++++.- ....+..+
T Consensus 112 -~~l~~L~~L~L~~n--~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~ 184 (520)
T 2z7x_B 112 -GNMSQLKFLGLSTT--HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184 (520)
T ss_dssp -GGCTTCCEEEEEES--SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCC
T ss_pred -ccCCcceEEEecCc--ccchhh----ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhh
Confidence 23447777777755 333322 2334566 7777766532 11111111
Q ss_pred --hhCCCceeecCcccccCCChHHHHHHHHHHhhcCCccccc-CCcccChhhHHhHhh--hCCCCCEEecCCCCCCChHH
Q 008325 228 --MRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLS-GFLEVVPCCLSAIHP--VCQNLTSLNLSYAPGIHGNE 302 (570)
Q Consensus 228 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~ 302 (570)
..+++|+.+++..................+..+++|+.|. ....+....+..+.. ..++|++|+++++. +++..
T Consensus 185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 263 (520)
T 2z7x_B 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQL 263 (520)
T ss_dssp CCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCC
T ss_pred hhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-ccCcc
Confidence 1233344444333221111111222222233334444433 111222222222211 12355555554443 21100
Q ss_pred HHHH----HhcCCCCCEEEeccccc---hhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcc
Q 008325 303 LIKL----IRFCRKLERLWILDSIG---DRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQ 375 (570)
Q Consensus 303 l~~l----~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~ 375 (570)
...+ ...+++|+.+++.++.. ...+..... .++|+.|+++ .+.+..... ...+++|+.|....+
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~-----~n~l~~~~~---~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVS-----GTRMVHMLC---PSKISPFLHLDFSNN 334 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEE-----SSCCCCCCC---CSSCCCCCEEECCSS
T ss_pred ccchhhcccccCceeEeccccccceecchhhhhcccc-cCceeEEEcC-----CCccccccc---hhhCCcccEEEeECC
Confidence 0000 02234444444443311 011222211 2457777776 222222110 124677777733344
Q ss_pred cCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhccccccee
Q 008325 376 QMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEML 454 (570)
Q Consensus 376 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L 454 (570)
.+++.....+ ..+++|+.|+++++ .++. -..+...+..+++|+.|++++ .++...-......+++|+.|
T Consensus 335 ~l~~~~~~~~-~~l~~L~~L~L~~N------~l~~---l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 335 LLTDTVFENC-GHLTELETLILQMN------QLKE---LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCTTTTTTC-CCCSSCCEEECCSS------CCCB---HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred ccChhhhhhh-ccCCCCCEEEccCC------ccCc---cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 5554333223 36778888888776 3441 123344567788899999887 44431111122346788999
Q ss_pred ecccCCCChHHHHHHHhcC-ccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHHhhCCceEE
Q 008325 455 SIAFAGNSDKGMLYVLNGC-KKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNV 528 (570)
Q Consensus 455 ~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~~ 528 (570)
++++|.++.... ... ++|+.|++++|.++.. ...+..+++|+.|++++|+++..... ....++.++.
T Consensus 405 ~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~ 472 (520)
T 2z7x_B 405 NMSSNILTDTIF----RCLPPRIKVLDLHSNKIKSI--PKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQK 472 (520)
T ss_dssp ECCSSCCCGGGG----GSCCTTCCEEECCSSCCCCC--CGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCE
T ss_pred ECcCCCCCcchh----hhhcccCCEEECCCCccccc--chhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccE
Confidence 999888864322 222 6899999999987742 23345888999999999987642211 2234555553
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=2.1e-19 Score=177.74 Aligned_cols=322 Identities=15% Similarity=0.091 Sum_probs=188.0
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
.++++.|+++++.++.-....+. .+++|++|++.++ .++...... +..+++|++|++++|.+.......+ ..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~-~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~----~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVF----QNV 116 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHH-HCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTT----TTC
T ss_pred cCCceEEEecCCchhhCChhHhc-ccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCCCCCcCCHHHh----cCC
Confidence 36777788777754432222222 5677888887766 343321111 2367788888888776655433333 234
Q ss_pred CcccEEEeccccCCCCHHHHH-HHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHh
Q 008325 180 TSLVSLNFSCLKGEINLTALE-RLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLV 258 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (570)
++|+.|+++++ .+. .+. .+...+++|++|+++++.-.......+..+++|+.|.+....
T Consensus 117 ~~L~~L~L~~n--~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------- 176 (390)
T 3o6n_A 117 PLLTVLVLERN--DLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR---------------- 176 (390)
T ss_dssp TTCCEEECCSS--CCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC----------------
T ss_pred CCCCEEECCCC--ccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc----------------
Confidence 57777777755 121 111 112446677777777664111111223334444444433211
Q ss_pred hcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCc
Q 008325 259 KCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQ 338 (570)
Q Consensus 259 ~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 338 (570)
+.... ...+++|++|+++++. ++.. ...++|+.|++.++.-...- ....++|+
T Consensus 177 -------------l~~~~----~~~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~l~~~~---~~~~~~L~ 229 (390)
T 3o6n_A 177 -------------LTHVD----LSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNSINVVR---GPVNVELT 229 (390)
T ss_dssp -------------CSBCC----GGGCTTCSEEECCSSC-CSEE------ECCSSCSEEECCSSCCCEEE---CCCCSSCC
T ss_pred -------------CCccc----cccccccceeeccccc-cccc------CCCCcceEEECCCCeeeecc---cccccccc
Confidence 11110 2345677777777665 4431 23356777777765211100 01235677
Q ss_pred eeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHH
Q 008325 339 ELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFG 418 (570)
Q Consensus 339 ~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~ 418 (570)
.|+++ .+.+++. .....+++|+.|+++++. ++.. ..
T Consensus 230 ~L~l~-----~n~l~~~----------------------------~~l~~l~~L~~L~Ls~n~------l~~~-----~~ 265 (390)
T 3o6n_A 230 ILKLQ-----HNNLTDT----------------------------AWLLNYPGLVEVDLSYNE------LEKI-----MY 265 (390)
T ss_dssp EEECC-----SSCCCCC----------------------------GGGGGCTTCSEEECCSSC------CCEE-----ES
T ss_pred EEECC-----CCCCccc----------------------------HHHcCCCCccEEECCCCc------CCCc-----Ch
Confidence 77777 3333321 112368899999998873 4311 11
Q ss_pred HHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhc
Q 008325 419 AIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGK 497 (570)
Q Consensus 419 ~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (570)
..+..+++|++|++++ .++.- ......+++|+.|++++|.++... .-...+++|++|++++|.+++.. +..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~----~~~ 337 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK----LST 337 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC----CCT
T ss_pred hHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC----chh
Confidence 2356789999999988 54431 111245789999999999974321 11244689999999999887754 468
Q ss_pred cccccEEEeecccCChhHHHHHHhhCCceE
Q 008325 498 YETMRSLWMSSCEVTLGGCQTLAKKMPRLN 527 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~ 527 (570)
+++|+.|++++|+++.+....+....+...
T Consensus 338 ~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp TCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred hccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 899999999999999988888877776543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=1.9e-20 Score=203.28 Aligned_cols=217 Identities=13% Similarity=0.045 Sum_probs=100.5
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccC
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGC 364 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~ 364 (570)
++|+.|+++++. +..... ..+..+++|+.|++.++.-..........+++|++|+++ .+.++...... ...+
T Consensus 266 ~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~~-~~~l 337 (844)
T 3j0a_A 266 SSVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS-----YNLLGELYSSN-FYGL 337 (844)
T ss_dssp SCCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE-----SCCCSCCCSCS-CSSC
T ss_pred CCccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC-----CCCCCccCHHH-hcCC
Confidence 577777777665 443211 122456777777777652211111122356677777777 23332211001 1125
Q ss_pred hhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCc------c-hhhHHHHHhcCccCcEEecCC-cc
Q 008325 365 PKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQP------L-DEGFGAIVQSCKRLRRLSLSG-LL 436 (570)
Q Consensus 365 ~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~------~-~~~~~~~~~~~~~L~~L~l~~-~i 436 (570)
++|+.|....+.++...... ...+++|+.|+++++... .+...+ + ...+..+.....+++.|++++ .+
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~---~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDLRDNALT---TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSC-SCSCCCCCEEEEETCCSC---CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred CCCCEEECCCCCCCccChhh-hcCCCCCCEEECCCCCCC---cccCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 56666622222332211111 124566777777665321 111000 0 000000011123455555554 33
Q ss_pred cHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHH----HHHHHhccccccEEEeecccCC
Q 008325 437 TDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTA----LLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 437 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
++.........+++|+.|++++|.++..........+++|+.|++++|.++... ....+..+++|+.|+|++|+++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 332222223356777777777777643211111233567777777777654211 1123456788888888888665
Q ss_pred h
Q 008325 513 L 513 (570)
Q Consensus 513 ~ 513 (570)
.
T Consensus 494 ~ 494 (844)
T 3j0a_A 494 S 494 (844)
T ss_dssp T
T ss_pred c
Confidence 3
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=5.3e-20 Score=195.97 Aligned_cols=212 Identities=12% Similarity=0.030 Sum_probs=91.5
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHH-----
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVA----- 359 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~----- 359 (570)
++|++|+++++. ++..... .+..+++|+.|++.++.-..........+++|+.|+++ ++..-.......
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~----~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 248 TNLTMLDLSYNN-LNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK----RSFTKQSISLASLPKID 321 (680)
T ss_dssp SCCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECT----TCBCCC------CCEEC
T ss_pred CCCCEEECCCCC-cCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEecc----chhhhcccccccccccC
Confidence 347777777665 4432211 12556777777777652222111222356777777776 211000000000
Q ss_pred --HHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cc
Q 008325 360 --ISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LL 436 (570)
Q Consensus 360 --l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i 436 (570)
....+++|+.|....+.++...... ...+++|+.|+++++.. .+...+ ...+. .-..++|+.|++++ .+
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~----~~~~l~-~~~f~--~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFT----SLRTLT-NETFV--SLAHSPLHILNLTKNKI 393 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEEECTTCBS----CCCEEC-TTTTG--GGTTSCCCEEECTTSCC
T ss_pred hhhcccCCCCCEEECCCCccCCCChhH-hccccCCcEEECCCCch----hhhhcc-hhhhc--ccccCcCceEECCCCCC
Confidence 0112445555522222222211111 12455566655554321 011000 00000 00124566666655 33
Q ss_pred cHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 437 TDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 437 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
+..... ....+++|+.|++++|.++.........++++|++|++++|.++.... ..+..+++|+.|++++|.++
T Consensus 394 ~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~ 467 (680)
T 1ziw_A 394 SKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR-NSFALVPSLQRLMLRRVALK 467 (680)
T ss_dssp CEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT-TTTTTCTTCCEEECTTSCCB
T ss_pred CeEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh-hhhhcCcccccchhcccccc
Confidence 221111 112356677777776665321111112456667777777765433211 12345677777777777553
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.6e-19 Score=189.22 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=42.2
Q ss_pred hCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCC-CCH----HHHHHHH---HhCCCCceeecCCCCCch
Q 008325 150 NCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGE-INL----TALERLV---ARSPNLKSLRLNRAVPLD 221 (570)
Q Consensus 150 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~----~~l~~l~---~~~~~L~~L~l~~~~~~~ 221 (570)
.+++|++|++++|.+....+..+. .+++|+.|+++.+ . ++. ..+..+. ..+++|+.|+++++.- .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~----~L~~L~~L~Ls~N--~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~ 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLY----DLPELQSLNIACN--RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-E 561 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGG----GCSSCCEEECTTC--TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-C
T ss_pred cCCCCCEEECcCCCCCccChHHHh----CCCCCCEEECcCC--CCcccccchHHHHhhhhcccccCCccEEEeeCCcC-C
Confidence 566666666666654433332232 3346666666644 2 222 1122211 2334666666666542 2
Q ss_pred hHHH--HHhhCCCceeecCccc
Q 008325 222 TLQK--LLMRAPQLVDLGIGSF 241 (570)
Q Consensus 222 ~l~~--~~~~~~~L~~L~l~~~ 241 (570)
.++. .+..+++|+.|.++..
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTS
T ss_pred ccCChhhhhcCCCCCEEECCCC
Confidence 4443 5556666666666543
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=1.2e-19 Score=190.40 Aligned_cols=111 Identities=11% Similarity=0.106 Sum_probs=60.6
Q ss_pred hCCCccEEEecCCCCCChH----------------HHHHHHH--hCCCCCEEeccccccccccccccccccCCCCcccEE
Q 008325 124 SFVNFKSLVLVSCEGFTTD----------------GLAAIAA--NCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSL 185 (570)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~----------------~l~~l~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L 185 (570)
.+++|++|+++++. ++.. .+..-.. .+++|++|++++|.+....+..+ ..+++|+.|
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L 278 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KALPEMQLI 278 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTCSSCCEE
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH----hcCCCCCEE
Confidence 45667777777663 4431 0222223 56777777777776544333323 234477777
Q ss_pred EeccccCC-CCHHHHHHHHHh------CCCCceeecCCCCCchhHHH--HHhhCCCceeecCcccc
Q 008325 186 NFSCLKGE-INLTALERLVAR------SPNLKSLRLNRAVPLDTLQK--LLMRAPQLVDLGIGSFV 242 (570)
Q Consensus 186 ~l~~~~~~-~~~~~l~~l~~~------~~~L~~L~l~~~~~~~~l~~--~~~~~~~L~~L~l~~~~ 242 (570)
+++.+ . ++...+...... +++|+.|+++++. +..++. .+..+++|+.|.+....
T Consensus 279 ~Ls~n--~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 279 NVACN--RGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp ECTTC--TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC
T ss_pred ECcCC--CCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc
Confidence 77755 3 333122222222 3677777777664 224444 56667777777765543
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=1.3e-20 Score=196.62 Aligned_cols=133 Identities=19% Similarity=0.100 Sum_probs=85.6
Q ss_pred CCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCCh
Q 008325 62 PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTT 141 (570)
Q Consensus 62 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 141 (570)
++++.|+++++.. .... + .....+++|++|++++|.++......+. .+++|++|++.++. ++.
T Consensus 28 ~~l~~L~Ls~n~l-~~~~--~------------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~-l~~ 90 (570)
T 2z63_A 28 FSTKNLDLSFNPL-RHLG--S------------YSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNP-IQS 90 (570)
T ss_dssp SSCCEEECCSCCC-CEEC--T------------TTTTTCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCC-CCE
T ss_pred ccccEEEccCCcc-CccC--h------------hHhhCCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCc-CCc
Confidence 4589999986543 1111 1 1123678999999999876653322333 57899999999773 433
Q ss_pred HHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 142 DGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 142 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
.... .+..+++|++|++++|.+....... ...+++|++|+++++ .+....+......+++|+.|+++++.
T Consensus 91 ~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n--~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 91 LALG-AFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTT-TTTTCTTCCEEECTTSCCCCSTTCS----CTTCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cCHh-hhcCccccccccccccccccCCCcc----ccccccccEEecCCC--ccceecChhhhcccCCCCEEeCcCCc
Confidence 2211 2247899999999999776544332 335669999999966 22211112234568899999999875
No 34
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.6e-15 Score=147.96 Aligned_cols=117 Identities=10% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCceeeeeeecCCCCCCCCCCcchhhHHHHHhcC-ccCcEEecCC-cccHHHHHHHHh----cccccceeecccCCCChH
Q 008325 391 NFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSC-KRLRRLSLSG-LLTDQVFLYIGM----YAEQLEMLSIAFAGNSDK 464 (570)
Q Consensus 391 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~L~~L~l~~-~i~~~~~~~l~~----~~~~L~~L~l~~~~i~~~ 464 (570)
+|++|++++| .+++.. ...+...+..+ ++|+.|++++ .+++.+...+.. ..++|+.|++++|.+++.
T Consensus 168 ~L~~L~Ls~n------~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 168 NVNSLNLRGN------NLASKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp TCCEEECTTS------CGGGSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred cccEeeecCC------CCchhh-HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 6666666655 333111 12223333444 3666666666 555544443332 234677777777776554
Q ss_pred HHHH---HHhcCccCceEEecCCC---CChHHHHHHH---hccccccEEEeecccCChh
Q 008325 465 GMLY---VLNGCKKLRKLEIRDSP---FGNTALLTDV---GKYETMRSLWMSSCEVTLG 514 (570)
Q Consensus 465 ~~~~---l~~~~~~L~~L~l~~~~---~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~ 514 (570)
+... +...+++|+.|++++|. +++.++..+. ..+++|+.|++++|++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3333 33446677777777774 5555544333 3445666677777766554
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.4e-18 Score=179.52 Aligned_cols=320 Identities=15% Similarity=0.099 Sum_probs=187.9
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
.++++.++++++.++......+. .+++|+.|+++++ .++......+ ..+++|+.|++++|.+.......+ ..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~----~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVF----QNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHH-HCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTT----TTC
T ss_pred CCCceEEEeeCCCCCCcCHHHHc-cCCCCcEEECCCC-CCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHH----cCC
Confidence 36778888887754432222222 5678888888766 3433211122 367888888888887665443333 344
Q ss_pred CcccEEEeccccCCCCHHHHH-HHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHh
Q 008325 180 TSLVSLNFSCLKGEINLTALE-RLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLV 258 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (570)
++|+.|+++++ .+. .+. .++..+++|++|+++++.-....+..+..+++|+.|.+....
T Consensus 123 ~~L~~L~L~~n--~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~---------------- 182 (597)
T 3oja_B 123 PLLTVLVLERN--DLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR---------------- 182 (597)
T ss_dssp TTCCEEECCSS--CCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC----------------
T ss_pred CCCCEEEeeCC--CCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC----------------
Confidence 57888888755 121 111 122456778888877764211122233444445554443221
Q ss_pred hcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCc
Q 008325 259 KCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQ 338 (570)
Q Consensus 259 ~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 338 (570)
+.... ...+++|+.|+++++. ++.. ...++|+.|++.++.-.... ....++|+
T Consensus 183 -------------l~~~~----~~~l~~L~~L~l~~n~-l~~l------~~~~~L~~L~ls~n~l~~~~---~~~~~~L~ 235 (597)
T 3oja_B 183 -------------LTHVD----LSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNSINVVR---GPVNVELT 235 (597)
T ss_dssp -------------CSBCC----GGGCTTCSEEECCSSC-CSEE------ECCTTCSEEECCSSCCCEEE---CSCCSCCC
T ss_pred -------------CCCcC----hhhhhhhhhhhcccCc-cccc------cCCchhheeeccCCcccccc---cccCCCCC
Confidence 11100 2345677777777665 4431 23456777777665211000 01235677
Q ss_pred eeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHH
Q 008325 339 ELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFG 418 (570)
Q Consensus 339 ~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~ 418 (570)
.|+++ .+.+++. .....+++|+.|+++++. ++.. ..
T Consensus 236 ~L~L~-----~n~l~~~----------------------------~~l~~l~~L~~L~Ls~N~------l~~~-----~~ 271 (597)
T 3oja_B 236 ILKLQ-----HNNLTDT----------------------------AWLLNYPGLVEVDLSYNE------LEKI-----MY 271 (597)
T ss_dssp EEECC-----SSCCCCC----------------------------GGGGGCTTCSEEECCSSC------CCEE-----ES
T ss_pred EEECC-----CCCCCCC----------------------------hhhccCCCCCEEECCCCc------cCCC-----CH
Confidence 77777 3333321 112368899999998873 4311 11
Q ss_pred HHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhc
Q 008325 419 AIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGK 497 (570)
Q Consensus 419 ~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (570)
..+..+++|+.|++++ .++. +......+++|+.|++++|.++.. ......+++|+.|++++|.++... +..
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l~~L~~L~L~~N~l~~~~----~~~ 343 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK----LST 343 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC----CCT
T ss_pred HHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCcc--CcccccCCCCCEEECCCCCCCCcC----hhh
Confidence 2356789999999988 4443 111224478999999999998532 112245699999999999887654 467
Q ss_pred cccccEEEeecccCChhHHHHHHhhCCc
Q 008325 498 YETMRSLWMSSCEVTLGGCQTLAKKMPR 525 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~~~~~~l~~~~p~ 525 (570)
+++|+.|++++|+++.+....+....+.
T Consensus 344 ~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 371 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNSLRALFRNVAR 371 (597)
T ss_dssp TCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred cCCCCEEEeeCCCCCChhHHHHHHHHhh
Confidence 8999999999999988877777665543
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=1.3e-19 Score=196.84 Aligned_cols=398 Identities=15% Similarity=0.035 Sum_probs=178.9
Q ss_pred hCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCc-cCHHHHHHHHhhCCCccEEEecCCCC
Q 008325 60 RFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMV-VSDDCLELLSRSFVNFKSLVLVSCEG 138 (570)
Q Consensus 60 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~ 138 (570)
-.++++.|+++++.. . ++.|..+ ..+++|++|++++|. +..-....+ ..+++|++|+|+++ .
T Consensus 22 lp~~l~~LdLs~N~i-~--~i~~~~~------------~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI-R--TVTASSF------------PFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSS-K 84 (844)
T ss_dssp SCTTCCEEEEESCCC-C--EECSSSC------------SSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTC-C
T ss_pred CCCCcCEEECCCCcC-C--ccChhHC------------cccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCC-c
Confidence 345678888875432 1 1112211 255778888887772 221111112 25677888888766 3
Q ss_pred CChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 139 FTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 139 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
++.... ..+..+++|++|++++|.+.+..... .....+++|+.|+++.+ .+...........+++|+.|+++++.
T Consensus 85 l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 85 IYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKN--QIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCEECT-TSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESC--CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CcccCH-hHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCC--cccccccchhHhhCCCCCEEECCCCc
Confidence 432211 12236778888888887665422111 11234557888888755 22111111223557778888877663
Q ss_pred Cc----hhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcC------Cccccc-CCcccChhhHHhHhh--hCC
Q 008325 219 PL----DTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCK------SIRSLS-GFLEVVPCCLSAIHP--VCQ 285 (570)
Q Consensus 219 ~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~------~L~~L~-~~~~~~~~~l~~~~~--~~~ 285 (570)
-. ..+..+.. ++|+.|.+.......... ..+..+. +|+.|. ....+.......+.. ..+
T Consensus 160 i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~~------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 160 IFLVCEHELEPLQG--KTLSFFSLAANSLYSRVS------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCCCCSGGGHHHHH--CSSCCCEECCSBSCCCCC------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred CCeeCHHHcccccC--CccceEECCCCccccccc------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 11 11111111 566666655433211000 0000011 133333 111111111111111 112
Q ss_pred CCCEEecCCCC--------CCChHHHHHHHh-cCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHH
Q 008325 286 NLTSLNLSYAP--------GIHGNELIKLIR-FCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEG 356 (570)
Q Consensus 286 ~L~~L~l~~~~--------~l~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~ 356 (570)
+++.|.+..+. .+.+.....+.. ..++|+.|++.++.-..........+++|+.|+++ .+.++...
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-----~n~i~~~~ 306 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA-----YNKINKIA 306 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE-----SCCCCEEC
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC-----CCcCCCCC
Confidence 44444443111 011111111100 13678888887752222112223457788888888 34444322
Q ss_pred HHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-c
Q 008325 357 LVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-L 435 (570)
Q Consensus 357 l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~ 435 (570)
... ...+++|+.|....+.++......+ ..+++|+.|+++++... .+. .. .+..+++|+.|++++ .
T Consensus 307 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~i~---~~~----~~----~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 307 DEA-FYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNHIA---IIQ----DQ----TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTT-TTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCCCC---CCC----SS----CSCSCCCCCEEEEETCC
T ss_pred hHH-hcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCCCC---ccC----hh----hhcCCCCCCEEECCCCC
Confidence 111 1236777777333333332211111 25678888888776421 121 11 135567788888876 3
Q ss_pred ccHHHHHHHHhcccccceeecccCCC--------------------ChHHHHHHHhcCccCceEEecCCCCChHHHHHHH
Q 008325 436 LTDQVFLYIGMYAEQLEMLSIAFAGN--------------------SDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDV 495 (570)
Q Consensus 436 i~~~~~~~l~~~~~~L~~L~l~~~~i--------------------~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 495 (570)
++.- ..+++|+.|.+++|.+ +..+.......+++|+.|++++|.++........
T Consensus 374 l~~i------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 374 LTTI------HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp SCCC------SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred CCcc------cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 3321 1144555555555443 2222222233455555555555544421111112
Q ss_pred hccccccEEEeecccC
Q 008325 496 GKYETMRSLWMSSCEV 511 (570)
Q Consensus 496 ~~~~~L~~L~l~~~~i 511 (570)
..+++|+.|++++|++
T Consensus 448 ~~~~~L~~L~Ls~N~l 463 (844)
T 3j0a_A 448 SENPSLEQLFLGENML 463 (844)
T ss_dssp CSCTTCCBCEEESCCC
T ss_pred ccCCccccccCCCCcc
Confidence 3345555555555554
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=7.3e-19 Score=182.46 Aligned_cols=370 Identities=14% Similarity=0.120 Sum_probs=193.4
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccc-cccccccC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRG-QWISCFPD 177 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~ 177 (570)
.+++|++|++++|.++......+. .+++|++|+++++. ++. +... .+++|++|++++|.+..... ..+ .
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~----~ 143 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEF----G 143 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGG----G
T ss_pred cCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCCCccccCchHhh----c
Confidence 567788888887766543222233 45778888887663 432 1111 57788888888887654321 223 2
Q ss_pred CCCcccEEEeccccCCCCHHHHHHHHHhCCCC--ceeecCCCCC--chhHHHHH--------------------------
Q 008325 178 SCTSLVSLNFSCLKGEINLTALERLVARSPNL--KSLRLNRAVP--LDTLQKLL-------------------------- 227 (570)
Q Consensus 178 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~~l~~~~-------------------------- 227 (570)
.+++|+.|+++.+ .+....+ ..+++| +.|+++++.- ....+..+
T Consensus 144 ~l~~L~~L~L~~n--~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~ 217 (562)
T 3a79_B 144 NLTKLTFLGLSAA--KFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSV 217 (562)
T ss_dssp GCTTCCEEEEECS--BCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEE
T ss_pred ccCcccEEecCCC--ccccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcc
Confidence 3457888888855 2332222 223444 7777765531 00000000
Q ss_pred hhCCCceeecCcccccCCChHHHHHHHHHHhhcCCccccc-CCcccChhhHHhHhh--hCCCCCEEecCCCCCCC-----
Q 008325 228 MRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLS-GFLEVVPCCLSAIHP--VCQNLTSLNLSYAPGIH----- 299 (570)
Q Consensus 228 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~----- 299 (570)
..+++|+.+++.... ............+...++|+.|. ....+.+..+..+.. ..++|++|+++++. ++
T Consensus 218 ~~l~~L~~L~l~~n~--~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~ 294 (562)
T 3a79_B 218 NALGHLQLSNIKLND--ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDR 294 (562)
T ss_dssp SSEEEEEEEEEECCS--TTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCC
T ss_pred cccceEEEecccccc--cccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE-eeccccc
Confidence 012223333332211 00111222222333444444443 112222222222211 12355555554443 21
Q ss_pred --------------------------hHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcC
Q 008325 300 --------------------------GNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVT 353 (570)
Q Consensus 300 --------------------------~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~ 353 (570)
+..+..++ ..++|+.|++.++.-.... ....+++|++|+++ .+.++
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~-----~n~l~ 366 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT-----QNVFT 366 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC-----SSCCC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCCccccc--CccCCCCceEEECC-----CCccc
Confidence 12222222 1245666666654211000 01356788888888 44455
Q ss_pred HHHHHHHHccChhhHHHHHhcccCChH-HHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEec
Q 008325 354 EEGLVAISAGCPKLHSLLYFCQQMTNA-ALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSL 432 (570)
Q Consensus 354 ~~~l~~l~~~~~~L~~Ll~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l 432 (570)
+..... ...+++|+.|....+.++.. .+......+++|+.|+++++. ++.. .....+..+++|+.|++
T Consensus 367 ~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~------l~~~----~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 367 DSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS------LNSH----AYDRTCAWAESILVLNL 435 (562)
T ss_dssp TTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC------CBSC----CSSCCCCCCTTCCEEEC
T ss_pred cchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc------CCCc----cChhhhcCcccCCEEEC
Confidence 422211 13467777773333455531 222223478899999998774 3310 00112456789999999
Q ss_pred CC-cccHHHHHHHHhcc-cccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeeccc
Q 008325 433 SG-LLTDQVFLYIGMYA-EQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 433 ~~-~i~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 510 (570)
++ .++.... ... ++|+.|++++|.++. +..-...+++|++|++++|.++.... ..+..+++|+.|++++|+
T Consensus 436 ~~n~l~~~~~----~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 436 SSNMLTGSVF----RCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CSSCCCGGGG----SSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCC
T ss_pred CCCCCCcchh----hhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCC
Confidence 88 6654322 223 689999999999863 22222368999999999998775332 136789999999999998
Q ss_pred CCh
Q 008325 511 VTL 513 (570)
Q Consensus 511 i~~ 513 (570)
++.
T Consensus 509 ~~c 511 (562)
T 3a79_B 509 WDC 511 (562)
T ss_dssp BCC
T ss_pred cCC
Confidence 764
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=3.3e-20 Score=194.63 Aligned_cols=331 Identities=12% Similarity=0.044 Sum_probs=187.8
Q ss_pred HHhCCCCCEEeccccccccc--cccc-----------cccccC--CCCcccEEEeccccCCCCHHHHHHHHHhCCCCcee
Q 008325 148 AANCRYLRELDLQEIEVDDN--RGQW-----------ISCFPD--SCTSLVSLNFSCLKGEINLTALERLVARSPNLKSL 212 (570)
Q Consensus 148 ~~~~~~L~~L~l~~~~~~~~--~~~~-----------l~~~~~--~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 212 (570)
+..+++|++|++++|.+... ...| +..... .+++|++|+++++. ... .+......+++|+.|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLT-KLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCS-SCCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCc-cChHHHhcCCCCCEE
Confidence 45799999999999987652 0011 222233 56799999999662 111 111234568899999
Q ss_pred ecCCCCCch--hHHHHHhhC------CCceeecCcccccCCChHHHHHHHH--HHhhcCCccccc-CCcccChhhHHhHh
Q 008325 213 RLNRAVPLD--TLQKLLMRA------PQLVDLGIGSFVYDPSSEAYIKLKA--TLVKCKSIRSLS-GFLEVVPCCLSAIH 281 (570)
Q Consensus 213 ~l~~~~~~~--~l~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~-~~~~~~~~~l~~~~ 281 (570)
+++++..+. .++..+..+ ++|+.|.+....... +.. .+..+++|+.|. ....+... ++ ..
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-------ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~ 349 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-------FPVETSLQKMKKLGMLECLYNQLEGK-LP-AF 349 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-------CCCHHHHTTCTTCCEEECCSCCCEEE-CC-CC
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-------cCchhhhccCCCCCEEeCcCCcCccc-hh-hh
Confidence 999986333 466666554 899999988765432 122 456677787776 22222211 11 23
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCC-CCEEEeccccchhhHHHHHhc--CCCCceeecccCCCCCCCcCHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRK-LERLWILDSIGDRGLGVVAFT--CKELQELRVFPSGVDNAAVTEEGLV 358 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~l~~~~l~ 358 (570)
..+++|++|+++++. ++ .+...+..+++ |+.|++.++.-. .+...... +++|+.|+++ .+.++.....
T Consensus 350 ~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls-----~N~l~~~~p~ 420 (636)
T 4eco_A 350 GSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFS-----YNEIGSVDGK 420 (636)
T ss_dssp EEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECC-----SSCTTTTTTC
T ss_pred CCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECc-----CCcCCCcchh
Confidence 456788888888775 44 22222355677 888888876322 22211112 3478888888 3344332111
Q ss_pred HHH------ccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH---HhcCccCcE
Q 008325 359 AIS------AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI---VQSCKRLRR 429 (570)
Q Consensus 359 ~l~------~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~L~~ 429 (570)
.+. -.+++|+.|....+.++.. ...+...+++|+.|+++++... .+. ...+... ...+++|+.
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~l~---~i~----~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNMLT---EIP----KNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSCCS---BCC----SSSSEETTEECTTGGGCCE
T ss_pred hhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCCCC---CcC----HHHhccccccccccCCccE
Confidence 111 0245677773333344421 1223346788888888877432 121 1110000 122337888
Q ss_pred EecCC-cccHHHHHHHH--hcccccceeecccCCCChHHHHHHHhcCccCceEEecC------CCCChHHHHHHHhcccc
Q 008325 430 LSLSG-LLTDQVFLYIG--MYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRD------SPFGNTALLTDVGKYET 500 (570)
Q Consensus 430 L~l~~-~i~~~~~~~l~--~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~~ 500 (570)
|++++ .++. +.... ..+++|+.|++++|.++. +..-...+++|+.|++++ |.+... +...+..+++
T Consensus 493 L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~ 567 (636)
T 4eco_A 493 IDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPS 567 (636)
T ss_dssp EECCSSCCCB--CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSS
T ss_pred EECcCCcCCc--cChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCC
Confidence 88877 4441 22212 257788888888888754 322234678888888854 333322 1123467888
Q ss_pred ccEEEeecccCC
Q 008325 501 MRSLWMSSCEVT 512 (570)
Q Consensus 501 L~~L~l~~~~i~ 512 (570)
|+.|+|++|+++
T Consensus 568 L~~L~Ls~N~l~ 579 (636)
T 4eco_A 568 LTQLQIGSNDIR 579 (636)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCcCC
Confidence 888888888763
No 39
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=2.4e-15 Score=146.60 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=41.1
Q ss_pred CccCcEEecCC-cccHHHHHHH---HhcccccceeecccCC---CChHHHHHHHhc---CccCceEEecCCCCChHH
Q 008325 424 CKRLRRLSLSG-LLTDQVFLYI---GMYAEQLEMLSIAFAG---NSDKGMLYVLNG---CKKLRKLEIRDSPFGNTA 490 (570)
Q Consensus 424 ~~~L~~L~l~~-~i~~~~~~~l---~~~~~~L~~L~l~~~~---i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~ 490 (570)
.++|++|++++ .+++.+...+ ...+++|+.|++++|. +++.++..+... +++|+.|++++|.+.+..
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 34666666665 5555333332 2445677777777776 566666666544 456777788888776653
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=3.6e-18 Score=173.71 Aligned_cols=301 Identities=16% Similarity=0.059 Sum_probs=164.8
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++++.|+|+++.++......+. .+++|++|+++++ .++...... +..+++|++|++++|.+.......+ ..++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLGVF----TGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCSCCTTSS----TTCT
T ss_pred CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCCcCCccCcccc----cCCC
Confidence 5788888888866543222233 5677888888766 343321112 2367888888888876654432222 3345
Q ss_pred cccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhc
Q 008325 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKC 260 (570)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 260 (570)
+|+.|+++.+. +... .......+++|+.|+++++. +..
T Consensus 105 ~L~~L~Ls~n~--i~~~-~~~~~~~l~~L~~L~l~~n~--------------l~~------------------------- 142 (477)
T 2id5_A 105 NLTKLDISENK--IVIL-LDYMFQDLYNLKSLEVGDND--------------LVY------------------------- 142 (477)
T ss_dssp TCCEEECTTSC--CCEE-CTTTTTTCTTCCEEEECCTT--------------CCE-------------------------
T ss_pred CCCEEECCCCc--cccC-ChhHccccccCCEEECCCCc--------------cce-------------------------
Confidence 77777777541 1100 00112345666666666542 000
Q ss_pred CCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCcee
Q 008325 261 KSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQEL 340 (570)
Q Consensus 261 ~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 340 (570)
+.. .....+++|++|+++++. ++.... ..+..+++|+.|++.++............+++|++|
T Consensus 143 -----------~~~----~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 143 -----------ISH----RAFSGLNSLEQLTLEKCN-LTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp -----------ECT----TSSTTCTTCCEEEEESCC-CSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred -----------eCh----hhccCCCCCCEEECCCCc-CcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 000 112345678888887775 554332 223667888888887752211111122356778888
Q ss_pred ecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH
Q 008325 341 RVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI 420 (570)
Q Consensus 341 ~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~ 420 (570)
+++ ++..+.... .. .. ...+|+.|+++++. ++..+ ...
T Consensus 206 ~l~----~~~~~~~~~----------------------~~----~~-~~~~L~~L~l~~n~------l~~~~-----~~~ 243 (477)
T 2id5_A 206 EIS----HWPYLDTMT----------------------PN----CL-YGLNLTSLSITHCN------LTAVP-----YLA 243 (477)
T ss_dssp EEE----CCTTCCEEC----------------------TT----TT-TTCCCSEEEEESSC------CCSCC-----HHH
T ss_pred eCC----CCccccccC----------------------cc----cc-cCccccEEECcCCc------ccccC-----HHH
Confidence 888 332221100 00 00 23467777777663 33111 223
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccc
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYE 499 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (570)
+..+++|+.|++++ .++..... ....+++|+.|++++|.++......+ ..+++|+.|++++|.++.... ..+..++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 320 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLVGGQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEE-SVFHSVG 320 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTT-SCTTCTTCCEEECCSSCCSEECTTTB-TTCTTCCEEECCSSCCSCCCG-GGBSCGG
T ss_pred hcCccccCeeECCCCcCCccChh-hccccccCCEEECCCCccceECHHHh-cCcccCCEEECCCCcCceeCH-hHcCCCc
Confidence 56677788888876 33322111 11346778888888877644322222 457788888888886665332 2345677
Q ss_pred cccEEEeecccCC
Q 008325 500 TMRSLWMSSCEVT 512 (570)
Q Consensus 500 ~L~~L~l~~~~i~ 512 (570)
+|+.|++++|+++
T Consensus 321 ~L~~L~l~~N~l~ 333 (477)
T 2id5_A 321 NLETLILDSNPLA 333 (477)
T ss_dssp GCCEEECCSSCEE
T ss_pred ccCEEEccCCCcc
Confidence 8888888888654
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2.6e-17 Score=175.80 Aligned_cols=370 Identities=13% Similarity=0.094 Sum_probs=205.4
Q ss_pred HHhhCCCCceeeeCCCCCcccCCCCCCCCCCCcchH----HH-HH-HhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccE
Q 008325 57 VIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPW----VE-AL-AKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKS 130 (570)
Q Consensus 57 l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~----l~-~l-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~ 130 (570)
.+..+++|+.|+++++.... .+ ++..|....... +. .+ ...+++|++|+|++|.+.......+. .+++|+.
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg-~~-i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTY-DN-IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCG-GG-BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCE
T ss_pred HHhcCCCCCEEECcCCcCCC-Cc-ccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCE
Confidence 36678999999999765322 00 011111100000 00 00 12568999999999865443333344 6789999
Q ss_pred EEecCCCCCChHHHHH-HH------HhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHH
Q 008325 131 LVLVSCEGFTTDGLAA-IA------ANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLV 203 (570)
Q Consensus 131 L~l~~~~~~~~~~l~~-l~------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 203 (570)
|+++++..++...+.. +. ..+++|+.|++++|.+... +. . .....+++|+.|+++.+ .+. .+. ..
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~-~-~~l~~L~~L~~L~Ls~N--~l~--~lp-~~ 591 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PA-S-ASLQKMVKLGLLDCVHN--KVR--HLE-AF 591 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CC-H-HHHTTCTTCCEEECTTS--CCC--BCC-CC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CC-h-hhhhcCCCCCEEECCCC--Ccc--cch-hh
Confidence 9999884366522222 21 2456999999999987622 11 0 02234569999999966 232 222 34
Q ss_pred HhCCCCceeecCCCCCchhHHHHHhhCCC-ceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhh
Q 008325 204 ARSPNLKSLRLNRAVPLDTLQKLLMRAPQ-LVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHP 282 (570)
Q Consensus 204 ~~~~~L~~L~l~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~ 282 (570)
..+++|+.|+++++. +..++..+..+++ |+.|.+..... . .++....
T Consensus 592 ~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L-----------------------------~--~lp~~~~ 639 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKL-----------------------------K--YIPNIFN 639 (876)
T ss_dssp CTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCC-----------------------------C--SCCSCCC
T ss_pred cCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCC-----------------------------C--cCchhhh
Confidence 567889999998875 2244434455555 66666544321 1 0111111
Q ss_pred h--CCCCCEEecCCCCCCChHH--HH-HH-HhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHH
Q 008325 283 V--CQNLTSLNLSYAPGIHGNE--LI-KL-IRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEG 356 (570)
Q Consensus 283 ~--~~~L~~L~l~~~~~l~~~~--l~-~l-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~ 356 (570)
. .++|+.|+++++. +.... +. .+ ...+++|+.|++.++.-...-..+...+++|+.|+++ .+.++...
T Consensus 640 ~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls-----~N~L~~ip 713 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS-----NNLMTSIP 713 (876)
T ss_dssp TTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECC-----SCCCSCCC
T ss_pred ccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECC-----CCcCCccC
Confidence 1 2358888888776 54311 00 00 0123478888888763322222344467888888888 33443110
Q ss_pred HHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHH--hcCccCcEEecCC
Q 008325 357 LVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV--QSCKRLRRLSLSG 434 (570)
Q Consensus 357 l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~L~~L~l~~ 434 (570)
... + .... .....|++|+.|+|+++. ++..+ . .+ ..+++|+.|+|++
T Consensus 714 ~~~----~----------~~~~-----~~l~nl~~L~~L~Ls~N~------L~~lp--~----~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 714 ENS----L----------KPKD-----GNYKNTYLLTTIDLRFNK------LTSLS--D----DFRATTLPYLSNMDVSY 762 (876)
T ss_dssp TTS----S----------SCTT-----SCCTTGGGCCEEECCSSC------CCCCC--G----GGSTTTCTTCCEEECCS
T ss_pred hHH----h----------cccc-----ccccccCCccEEECCCCC------Cccch--H----HhhhccCCCcCEEEeCC
Confidence 000 0 0000 000134578888888774 33111 1 12 3678888888887
Q ss_pred -cccHHHHHHHHhcccccceeeccc------CCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEee
Q 008325 435 -LLTDQVFLYIGMYAEQLEMLSIAF------AGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMS 507 (570)
Q Consensus 435 -~i~~~~~~~l~~~~~~L~~L~l~~------~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 507 (570)
.++. +..-...+++|+.|++++ |.+.... ......+++|+.|+|++|.++.... . -.++|+.|+|+
T Consensus 763 N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-p~~l~~L~~L~~L~Ls~N~L~~Ip~--~--l~~~L~~LdLs 835 (876)
T 4ecn_A 763 NCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW-PTGITTCPSLIQLQIGSNDIRKVDE--K--LTPQLYILDIA 835 (876)
T ss_dssp SCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCCCBCCS--C--CCSSSCEEECC
T ss_pred CCCCc--cchhhhcCCCCCEEECCCCCCcccccccccC-hHHHhcCCCCCEEECCCCCCCccCH--h--hcCCCCEEECC
Confidence 5443 222223578889998876 4442211 1122568999999999998754321 1 23689999999
Q ss_pred cccCCh
Q 008325 508 SCEVTL 513 (570)
Q Consensus 508 ~~~i~~ 513 (570)
+|++..
T Consensus 836 ~N~l~~ 841 (876)
T 4ecn_A 836 DNPNIS 841 (876)
T ss_dssp SCTTCE
T ss_pred CCCCCc
Confidence 997643
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.64 E-value=6e-17 Score=162.47 Aligned_cols=142 Identities=17% Similarity=0.121 Sum_probs=89.0
Q ss_pred hhCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCC
Q 008325 59 GRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEG 138 (570)
Q Consensus 59 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 138 (570)
..+++++.|+++++.. .+. | . ...+++|++|+++++.++... + ..+++|++|+++++.
T Consensus 39 ~~l~~L~~L~Ls~n~l-~~~---~------------~-l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~- 96 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSI-TDM---T------------G-IEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNK- 96 (457)
T ss_dssp HHHTTCCEEECCSSCC-CCC---T------------T-GGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSC-
T ss_pred hHcCCCCEEEccCCCc-ccC---h------------h-hcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCC-
Confidence 3457788888886532 111 1 0 135688888888888766532 2 356888888888773
Q ss_pred CChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 139 FTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 139 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
++... ...+++|++|++++|.+.... ...+++|+.|+++.+ .+.. +. ...+++|+.|+++++.
T Consensus 97 l~~~~----~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N--~l~~--l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 97 LTNLD----VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARN--TLTE--ID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSCCC----CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTS--CCSC--CC--CTTCTTCCEEECTTCS
T ss_pred Cceee----cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCC--ccce--ec--cccCCcCCEEECCCCC
Confidence 44321 347888888888888766431 235568888888855 2221 11 3457788888888775
Q ss_pred CchhHHHHHhhCCCceeecCccc
Q 008325 219 PLDTLQKLLMRAPQLVDLGIGSF 241 (570)
Q Consensus 219 ~~~~l~~~~~~~~~L~~L~l~~~ 241 (570)
.+..+ .+..+++|+.|.++..
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSS
T ss_pred ccccc--ccccCCcCCEEECCCC
Confidence 43333 2445667777766554
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=4.7e-17 Score=164.55 Aligned_cols=342 Identities=11% Similarity=0.030 Sum_probs=186.6
Q ss_pred CCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccc-cccccccccCCCCcccEEEeccccCCCCHHHHHHHHH
Q 008325 126 VNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDN-RGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVA 204 (570)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 204 (570)
++|++|+++++ .++...... +..+++|++|++++|.+... ... ....+++|++|+++++. +... ......
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~----~~~~l~~L~~L~Ls~n~--l~~~-~~~~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNN----TFRGLSSLIILKLDYNQ--FLQL-ETGAFN 100 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT-TSSCTTCCEEECCCCSTTCEECTT----TTTTCTTCCEEECTTCT--TCEE-CTTTTT
T ss_pred CccCEEEecCC-ccCcCChhH-hccCccccEEECcCCcccceECcc----cccccccCCEEeCCCCc--cCcc-Chhhcc
Confidence 78999999987 454322222 34789999999999975422 112 23456799999999662 2111 112235
Q ss_pred hCCCCceeecCCCCCchhHHHH--HhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhh
Q 008325 205 RSPNLKSLRLNRAVPLDTLQKL--LMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHP 282 (570)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~l~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~ 282 (570)
.+++|++|+++++.-....... +..+++|++|.+....... .....+..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------------~~~~~~~~ 151 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----------------------------IQPASFFL 151 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----------------------------CCCCGGGG
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----------------------------cCcccccC
Confidence 5789999999988633333332 6677888888776544221 00111123
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHh-cCCCCCEEEeccccchh------hHHHH--HhcCCCCceeecccCCCCCCCcC
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIR-FCRKLERLWILDSIGDR------GLGVV--AFTCKELQELRVFPSGVDNAAVT 353 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~~~------~~~~~--~~~~~~L~~L~l~~~~~~~~~l~ 353 (570)
.+++|++|+++++. ++......+.. ..++|+.|++.++.... +.... ...+++|++|+++ .+.++
T Consensus 152 ~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls-----~n~l~ 225 (455)
T 3v47_A 152 NMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS-----GNGFK 225 (455)
T ss_dssp GCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT-----TSCCC
T ss_pred CCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC-----CCccc
Confidence 44555555555544 32211111100 11344444444431100 00000 0122445555555 33344
Q ss_pred HHHHHHHHcc--ChhhHHH-HHhcccC------------ChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHH
Q 008325 354 EEGLVAISAG--CPKLHSL-LYFCQQM------------TNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFG 418 (570)
Q Consensus 354 ~~~l~~l~~~--~~~L~~L-l~~~~~l------------~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~ 418 (570)
......+... .++|+.| +..+... ....+. ...+++|+.|+++++. ++.. ..
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~------l~~~-----~~ 292 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK--GLEASGVKTCDLSKSK------IFAL-----LK 292 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG--GGTTSCCCEEECCSSC------CCEE-----CT
T ss_pred ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc--cccccCceEEEecCcc------cccc-----ch
Confidence 3333222221 1233333 2211100 000000 0134789999998774 3311 12
Q ss_pred HHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhc
Q 008325 419 AIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGK 497 (570)
Q Consensus 419 ~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (570)
..+..+++|+.|++++ .+++..... ...+++|+.|++++|.++......+ ..+++|++|++++|.++.... ..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 369 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMF-ENLDKLEVLDLSYNHIRALGD-QSFLG 369 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGG-TTCTTCCEEECCSSCCCEECT-TTTTT
T ss_pred hhcccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcChhHh-cCcccCCEEECCCCcccccCh-hhccc
Confidence 2356789999999988 555322212 2347899999999999855433333 668999999999998876532 34578
Q ss_pred cccccEEEeecccCChhHHHHHHhhCCceEE
Q 008325 498 YETMRSLWMSSCEVTLGGCQTLAKKMPRLNV 528 (570)
Q Consensus 498 ~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~~ 528 (570)
+++|+.|++++|+++..... ....++.++.
T Consensus 370 l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~ 399 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDG-IFDRLTSLQK 399 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTT-TTTTCTTCCE
T ss_pred cccccEEECCCCccccCCHh-HhccCCcccE
Confidence 99999999999988653222 2245566653
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=5.8e-17 Score=162.56 Aligned_cols=201 Identities=16% Similarity=0.120 Sum_probs=121.4
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
.+++|++|+++++.+++. ..+. .+++|++|+++++. ++... ...+++|++|++++|.+.... ...
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~-------~~~ 104 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTNLD-------VTP 104 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSCCC-------CTT
T ss_pred HcCCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCceee-------cCC
Confidence 458999999999977653 2344 67999999999884 54421 347899999999999876542 345
Q ss_pred CCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHh
Q 008325 179 CTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLV 258 (570)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (570)
+++|+.|+++.+ .+.. +. ...+++|+.|+++++. +.++. +..+++|+.|.+......... .+.
T Consensus 105 l~~L~~L~L~~N--~l~~--l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--------~~~ 167 (457)
T 3bz5_A 105 LTKLTYLNCDTN--KLTK--LD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--------DVT 167 (457)
T ss_dssp CTTCCEEECCSS--CCSC--CC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--------CCT
T ss_pred CCcCCEEECCCC--cCCe--ec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--------ccc
Confidence 679999999966 2221 11 4567899999999875 32221 566788888887665321110 123
Q ss_pred hcCCccccc-CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCC
Q 008325 259 KCKSIRSLS-GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKEL 337 (570)
Q Consensus 259 ~~~~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 337 (570)
.+++|+.|. ....+... . ...+++|+.|+++++. ++... +..+++|+.|+++++.-.. +. ...+++|
T Consensus 168 ~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNN-ITKLD----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp TCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred cCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCc-CCeec----cccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 344555554 22222221 1 2345566666666655 44332 2445666666666541111 11 2345666
Q ss_pred ceeecc
Q 008325 338 QELRVF 343 (570)
Q Consensus 338 ~~L~l~ 343 (570)
+.|+++
T Consensus 236 ~~L~l~ 241 (457)
T 3bz5_A 236 TYFDCS 241 (457)
T ss_dssp SEEECC
T ss_pred CEEEee
Confidence 666666
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=1.7e-16 Score=156.85 Aligned_cols=323 Identities=15% Similarity=0.071 Sum_probs=197.2
Q ss_pred hCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCC
Q 008325 60 RFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGF 139 (570)
Q Consensus 60 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 139 (570)
.+++++.+.+.++. +.. +| ..+...+++|++|+++++.+++.....+. .+++|++|+++++. +
T Consensus 43 ~l~~l~~l~l~~~~-l~~---l~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~-l 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRK---LP-----------AALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA-I 105 (390)
T ss_dssp GGCCCSEEEEESCE-ESE---EC-----------THHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-C
T ss_pred ccCCceEEEecCCc-hhh---CC-----------hhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCC-C
Confidence 34678888887543 211 11 24456789999999998876653333333 57889999998773 4
Q ss_pred ChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 140 TTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 140 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
+.... ..+..+++|++|++++|.+....... ...+++|++|+++++. ..+.. .....+++|+.|+++++.
T Consensus 106 ~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 106 RYLPP-HVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSC
T ss_pred CcCCH-HHhcCCCCCCEEECCCCccCcCCHHH----hcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCc
Confidence 33211 12247899999999999776443222 2345689999998652 11211 123457899999998874
Q ss_pred CchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCC
Q 008325 219 PLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGI 298 (570)
Q Consensus 219 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l 298 (570)
+... -+..+++|+.+.+.... +.. ....++|++|+++++. +
T Consensus 177 -l~~~--~~~~l~~L~~L~l~~n~-----------------------------l~~------~~~~~~L~~L~l~~n~-l 217 (390)
T 3o6n_A 177 -LTHV--DLSLIPSLFHANVSYNL-----------------------------LST------LAIPIAVEELDASHNS-I 217 (390)
T ss_dssp -CSBC--CGGGCTTCSEEECCSSC-----------------------------CSE------EECCSSCSEEECCSSC-C
T ss_pred -CCcc--ccccccccceeeccccc-----------------------------ccc------cCCCCcceEEECCCCe-e
Confidence 1111 13445666666554321 110 1223578888888776 5
Q ss_pred ChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCC
Q 008325 299 HGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMT 378 (570)
Q Consensus 299 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~ 378 (570)
..... ...++|+.|++.++.-... .....+++|++|+++ .+.++....
T Consensus 218 ~~~~~----~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls-----~n~l~~~~~--------------------- 265 (390)
T 3o6n_A 218 NVVRG----PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLS-----YNELEKIMY--------------------- 265 (390)
T ss_dssp CEEEC----CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECC-----SSCCCEEES---------------------
T ss_pred eeccc----cccccccEEECCCCCCccc--HHHcCCCCccEEECC-----CCcCCCcCh---------------------
Confidence 44321 2347888888887622211 233467889999998 334432110
Q ss_pred hHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecc
Q 008325 379 NAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIA 457 (570)
Q Consensus 379 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~ 457 (570)
.....+++|+.|+++++. ++..+ .....+++|+.|++++ .++.- ..-...+++|+.|+++
T Consensus 266 -----~~~~~l~~L~~L~L~~n~------l~~~~------~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 266 -----HPFVKMQRLERLYISNNR------LVALN------LYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLD 326 (390)
T ss_dssp -----GGGTTCSSCCEEECCSSC------CCEEE------CSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECC
T ss_pred -----hHccccccCCEEECCCCc------CcccC------cccCCCCCCCEEECCCCcceec--CccccccCcCCEEECC
Confidence 011257888888888763 43211 1124678899999987 44321 1111346899999999
Q ss_pred cCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccccc
Q 008325 458 FAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMR 502 (570)
Q Consensus 458 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (570)
+|.++... ...+++|+.|++++|++........+..++...
T Consensus 327 ~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 327 HNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp SSCCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred CCccceeC----chhhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 99985543 356799999999999998887766666555443
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=2.3e-17 Score=171.13 Aligned_cols=396 Identities=13% Similarity=0.065 Sum_probs=198.4
Q ss_pred hhCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCC
Q 008325 59 GRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEG 138 (570)
Q Consensus 59 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 138 (570)
..+...+.++++++.. .-+|... .+++++|+++++.++......+. .+++|++|+++++ .
T Consensus 28 ~~~~~~~~l~ls~~~L----~~ip~~~--------------~~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N-~ 87 (562)
T 3a79_B 28 FSNELESMVDYSNRNL----THVPKDL--------------PPRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHN-R 87 (562)
T ss_dssp -----CCEEECTTSCC----CSCCTTS--------------CTTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSC-C
T ss_pred cccCCCcEEEcCCCCC----ccCCCCC--------------CCCcCEEECCCCCccccChhhhc-cCCCccEEECCCC-C
Confidence 3455567788875532 1244321 27899999999876653333333 6788999999987 4
Q ss_pred CChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 139 FTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 139 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
++...... +..+++|++|++++|.+...... .+++|++|+++++ .+..-.+......+++|+.|+++++.
T Consensus 88 l~~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-------~l~~L~~L~Ls~N--~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 88 IRSLDFHV-FLFNQDLEYLDVSHNRLQNISCC-------PMASLRHLDLSFN--DFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCEECTTT-TTTCTTCCEEECTTSCCCEECSC-------CCTTCSEEECCSS--CCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCcCCHHH-hCCCCCCCEEECCCCcCCccCcc-------ccccCCEEECCCC--CccccCchHhhcccCcccEEecCCCc
Confidence 54322122 24789999999999987633211 5679999999966 22211111234567899999998864
Q ss_pred CchhHHHHHhhCCCc--eeecCccccc--CCC-hHHHHHHH-------------------HHHhhcCCccccc-CCcccC
Q 008325 219 PLDTLQKLLMRAPQL--VDLGIGSFVY--DPS-SEAYIKLK-------------------ATLVKCKSIRSLS-GFLEVV 273 (570)
Q Consensus 219 ~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~-~~~~~~~~-------------------~~~~~~~~L~~L~-~~~~~~ 273 (570)
- .. ..+..+++| +.|.+..... ... ......+. ..+..+++|+.|. ......
T Consensus 158 l-~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (562)
T 3a79_B 158 F-RQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234 (562)
T ss_dssp C-CT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT
T ss_pred c-cc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccc
Confidence 2 21 122334444 7777655432 100 00000000 0000011111111 000000
Q ss_pred hhhHH---hHhhhCCCCCEEecCCCCCCChHHHHHHHh--cCCCCCEEEeccccch------------------------
Q 008325 274 PCCLS---AIHPVCQNLTSLNLSYAPGIHGNELIKLIR--FCRKLERLWILDSIGD------------------------ 324 (570)
Q Consensus 274 ~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~~------------------------ 324 (570)
...+. ......++|+.|++.++. +++..+..+.. ..++|+.|++.++.-.
T Consensus 235 ~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~ 313 (562)
T 3a79_B 235 CQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313 (562)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred cchHHHHHHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence 00000 112234455555555544 44443332221 2235666666543110
Q ss_pred --------hhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceee
Q 008325 325 --------RGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFR 396 (570)
Q Consensus 325 --------~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~ 396 (570)
..+..+.. ..+|++|+++ .+.+..... ...+++|+.|....+.+++.....+ ..+++|+.|+
T Consensus 314 ~~~~~~p~~~~~~~~~-~~~L~~L~l~-----~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ 383 (562)
T 3a79_B 314 NQVFLFSKEALYSVFA-EMNIKMLSIS-----DTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLI 383 (562)
T ss_dssp ECCCSSCHHHHHHHHH-TCCCSEEEEE-----SSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEE
T ss_pred cceeecChhhhhhhhc-cCcceEEEcc-----CCCcccccC---ccCCCCceEEECCCCccccchhhhh-cccCCCCEEE
Confidence 01111111 1234444444 111111100 0235666666333344444222222 2567777777
Q ss_pred eeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcC-c
Q 008325 397 LCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGC-K 474 (570)
Q Consensus 397 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~ 474 (570)
++++ .++. -..+...+..+++|+.|++++ .++...-......+++|+.|++++|.++.... ... +
T Consensus 384 L~~N------~l~~---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~ 450 (562)
T 3a79_B 384 LQRN------GLKN---FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPP 450 (562)
T ss_dssp CCSS------CCCB---TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCT
T ss_pred CCCC------CcCC---cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcC
Confidence 7766 3331 012223356778888888877 43331111122346788888888888764321 233 6
Q ss_pred cCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 475 KLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 475 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
+|+.|++++|.++... ..+..+++|+.|++++|+++.
T Consensus 451 ~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIP--KDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp TCSEEECCSSCCCCCC--TTTTSSCCCSEEECCSSCCCC
T ss_pred cCCEEECCCCcCcccC--hhhcCCCCCCEEECCCCCCCC
Confidence 8999999999777422 233488899999999998763
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=1.5e-15 Score=158.48 Aligned_cols=300 Identities=14% Similarity=0.053 Sum_probs=178.3
Q ss_pred HHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccccccccc
Q 008325 95 ALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISC 174 (570)
Q Consensus 95 ~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 174 (570)
.+...+++|++|+++++.++......+. .+++|++|+++++. ++.... ..+..+++|++|++++|.+.......
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~--- 142 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGI--- 142 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCCCCCCCHHH---
Confidence 4556789999999999876654333333 67889999999774 433221 22347899999999999876443322
Q ss_pred ccCCCCcccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHH
Q 008325 175 FPDSCTSLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKL 253 (570)
Q Consensus 175 ~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 253 (570)
...+++|+.|+++++. ..+.. ..+..+++|+.|+++++. +..+ -+..+++|+.|.+.....
T Consensus 143 -~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~-l~~~--~~~~l~~L~~L~l~~n~l---------- 204 (597)
T 3oja_B 143 -FHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYNLL---------- 204 (597)
T ss_dssp -TTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSC-CSBC--CGGGCTTCSEEECCSSCC----------
T ss_pred -hccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCC-CCCc--ChhhhhhhhhhhcccCcc----------
Confidence 2455699999999652 12221 123457899999999874 2221 134456666665543221
Q ss_pred HHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhc
Q 008325 254 KATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFT 333 (570)
Q Consensus 254 ~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 333 (570)
.. ....++|+.|+++++. ++.... ...++|+.|++.++.-... .....
T Consensus 205 -------------------~~------l~~~~~L~~L~ls~n~-l~~~~~----~~~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 205 -------------------ST------LAIPIAVEELDASHNS-INVVRG----PVNVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp -------------------SE------EECCTTCSEEECCSSC-CCEEEC----SCCSCCCEEECCSSCCCCC--GGGGG
T ss_pred -------------------cc------ccCCchhheeeccCCc-cccccc----ccCCCCCEEECCCCCCCCC--hhhcc
Confidence 10 1223467788887766 443221 1235788888877622111 22346
Q ss_pred CCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcc
Q 008325 334 CKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPL 413 (570)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~ 413 (570)
+++|+.|+++ .+.++.... .. ...+++|+.|+++++. ++..+
T Consensus 253 l~~L~~L~Ls-----~N~l~~~~~-------------------------~~-~~~l~~L~~L~Ls~N~------l~~l~- 294 (597)
T 3oja_B 253 YPGLVEVDLS-----YNELEKIMY-------------------------HP-FVKMQRLERLYISNNR------LVALN- 294 (597)
T ss_dssp CTTCSEEECC-----SSCCCEEES-------------------------GG-GTTCSSCCEEECTTSC------CCEEE-
T ss_pred CCCCCEEECC-----CCccCCCCH-------------------------HH-hcCccCCCEEECCCCC------CCCCC-
Confidence 7888888888 333332110 00 1256778888777663 33211
Q ss_pred hhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHH
Q 008325 414 DEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALL 492 (570)
Q Consensus 414 ~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 492 (570)
.....+++|+.|+|++ .++. +..-...+++|+.|++++|.++... ...+++|+.|++++|++......
T Consensus 295 -----~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 295 -----LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp -----CSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHH
T ss_pred -----cccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCChhHH
Confidence 1124567888888877 4332 1111134678888888888874432 24578889999988888776655
Q ss_pred HHHhccc
Q 008325 493 TDVGKYE 499 (570)
Q Consensus 493 ~~~~~~~ 499 (570)
.++....
T Consensus 364 ~~~~~~~ 370 (597)
T 3oja_B 364 ALFRNVA 370 (597)
T ss_dssp HHTTTCC
T ss_pred HHHHHHh
Confidence 5544433
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=3.2e-16 Score=159.29 Aligned_cols=277 Identities=16% Similarity=0.065 Sum_probs=169.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEecccc-CCCCHHHHHHHHH
Q 008325 126 VNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLK-GEINLTALERLVA 204 (570)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~ 204 (570)
++++.|+++++ .++...... +..+++|++|++++|.+.......+. .+++|+.|+++.+. ..+.. ..+.
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~----~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNRLKLIPL----GVFT 101 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCSCCT----TSST
T ss_pred CCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCCcCCccCc----cccc
Confidence 56888888876 344322112 23688888888888876654333332 34578888877541 11111 1123
Q ss_pred hCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhC
Q 008325 205 RSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVC 284 (570)
Q Consensus 205 ~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~ 284 (570)
.+++|+.|+++++. +.. + .......+
T Consensus 102 ~l~~L~~L~Ls~n~--------------i~~------------------------------------~----~~~~~~~l 127 (477)
T 2id5_A 102 GLSNLTKLDISENK--------------IVI------------------------------------L----LDYMFQDL 127 (477)
T ss_dssp TCTTCCEEECTTSC--------------CCE------------------------------------E----CTTTTTTC
T ss_pred CCCCCCEEECCCCc--------------ccc------------------------------------C----ChhHcccc
Confidence 45666666666543 000 0 01123456
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccC
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGC 364 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~ 364 (570)
++|++|+++++. +....... +..+++|+.|++.++.-..........+++|+.|+++ .+.+....
T Consensus 128 ~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-----~n~i~~~~-------- 192 (477)
T 2id5_A 128 YNLKSLEVGDND-LVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-----HLNINAIR-------- 192 (477)
T ss_dssp TTCCEEEECCTT-CCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE-----SCCCCEEC--------
T ss_pred ccCCEEECCCCc-cceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC-----CCcCcEeC--------
Confidence 789999998876 54432222 3567889999998863222222334467889999998 33332210
Q ss_pred hhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHH
Q 008325 365 PKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLY 443 (570)
Q Consensus 365 ~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~ 443 (570)
.. ....+++|+.|+++++. .+...+ .. .....+|++|++++ .++.....
T Consensus 193 --------------~~----~~~~l~~L~~L~l~~~~-----~~~~~~-~~-----~~~~~~L~~L~l~~n~l~~~~~~- 242 (477)
T 2id5_A 193 --------------DY----SFKRLYRLKVLEISHWP-----YLDTMT-PN-----CLYGLNLTSLSITHCNLTAVPYL- 242 (477)
T ss_dssp --------------TT----CSCSCTTCCEEEEECCT-----TCCEEC-TT-----TTTTCCCSEEEEESSCCCSCCHH-
T ss_pred --------------hh----hcccCcccceeeCCCCc-----cccccC-cc-----cccCccccEEECcCCcccccCHH-
Confidence 00 11267899999998764 222111 11 11234899999988 55533222
Q ss_pred HHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 444 IGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 444 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
....+++|+.|++++|.++......+ ..+++|++|++++|.++.... ..+..+++|+.|+|++|+++.
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSC-TTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSC
T ss_pred HhcCccccCeeECCCCcCCccChhhc-cccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCce
Confidence 23568999999999999854433223 568999999999998876432 345789999999999998764
No 49
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=6.1e-13 Score=129.04 Aligned_cols=195 Identities=16% Similarity=0.164 Sum_probs=125.2
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhc----CCCCCEEEeccc-cchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHH
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRF----CRKLERLWILDS-IGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGL 357 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~----~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l 357 (570)
..+.|++|++++|. +++.+...+... +++|+.|+++++ +++.++..+...+++|++|+++ .+.+++.+.
T Consensus 70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls-----~n~l~~~~~ 143 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ-----LNSLGPEAC 143 (372)
T ss_dssp HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECC-----SSCCCHHHH
T ss_pred HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcC-----CCCCCHHHH
Confidence 34689999999988 888776554432 256777777765 5556666655556677777777 456666655
Q ss_pred HHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH---HhcCccCcEEecCC
Q 008325 358 VAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI---VQSCKRLRRLSLSG 434 (570)
Q Consensus 358 ~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~L~~L~l~~ 434 (570)
..+.. .+...+++|++|+|++| .++ +.+...+ +..+++|++|+|++
T Consensus 144 ~~L~~---------------------~L~~~~~~L~~L~Ls~n------~l~----~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 144 KDLRD---------------------LLLHDQCQITTLRLSNN------PLT----AAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HHHHH---------------------HHHSTTCCCCEEECCSS------CCH----HHHHHHHHHHHHTCSSCCEEECTT
T ss_pred HHHHH---------------------HHHhcCCccceeeCCCC------CCC----hHHHHHHHHHHhcCCCcCEEeCCC
Confidence 44332 12224577888888777 465 5554443 35677788888887
Q ss_pred -cccHHHHHHHHh---cccccceeecccCCCChHHHHHHHh---cCccCceEEecCCCCChHHHHHHHhcc--c--cccE
Q 008325 435 -LLTDQVFLYIGM---YAEQLEMLSIAFAGNSDKGMLYVLN---GCKKLRKLEIRDSPFGNTALLTDVGKY--E--TMRS 503 (570)
Q Consensus 435 -~i~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~--~--~L~~ 503 (570)
.+++.++..++. ..++|+.|++++|.+++.+...++. .+++|++|+|++|.+++.+...+.... . .|+.
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~ 272 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEE
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchh
Confidence 777777766653 3567888888888888877766654 367888888888888887765443211 1 1666
Q ss_pred EE--eecccCChh
Q 008325 504 LW--MSSCEVTLG 514 (570)
Q Consensus 504 L~--l~~~~i~~~ 514 (570)
+. +.++.++.+
T Consensus 273 l~~ll~~~~~~~~ 285 (372)
T 3un9_A 273 VVSLTEGTAVSEY 285 (372)
T ss_dssp ECCCC----CHHH
T ss_pred hHhhhcCCccCHH
Confidence 66 666666554
No 50
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.49 E-value=4.8e-14 Score=118.34 Aligned_cols=104 Identities=12% Similarity=0.206 Sum_probs=92.8
Q ss_pred ccCcEEecCC-cccHHHHHHHHhcccccceeecccCC-CChHHHHHHHhc---CccCceEEecCC-CCChHHHHHHHhcc
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNG---CKKLRKLEIRDS-PFGNTALLTDVGKY 498 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~---~~~L~~L~l~~~-~~~~~~~~~~~~~~ 498 (570)
.+|+.|++++ .|++.++..+ ..+++|++|+|++|. +||.++..++.. |++|++|+|++| .+||.++.. +.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcC
Confidence 4699999998 8999999888 479999999999997 899999999763 679999999999 799999864 5689
Q ss_pred ccccEEEeecc-cCChhH--HHHHHhhCCceEEEE
Q 008325 499 ETMRSLWMSSC-EVTLGG--CQTLAKKMPRLNVEI 530 (570)
Q Consensus 499 ~~L~~L~l~~~-~i~~~~--~~~l~~~~p~~~~~~ 530 (570)
++|+.|+|++| +||+.+ +..+.+.+|.++|+.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 99999999999 699976 678999999999876
No 51
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=134.08 Aligned_cols=137 Identities=19% Similarity=0.176 Sum_probs=108.9
Q ss_pred CChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHh----cCccCcEEecCC-cccHHHHHHHH---hcc
Q 008325 377 MTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQ----SCKRLRRLSLSG-LLTDQVFLYIG---MYA 448 (570)
Q Consensus 377 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~L~~L~l~~-~i~~~~~~~l~---~~~ 448 (570)
+++.++..+...+++|+.|+|++| .++ +.+...+.. .+++|++|+|++ .+++.+...++ ..+
T Consensus 113 l~~~~~~~l~~~L~~L~~L~Ls~n------~l~----~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~ 182 (372)
T 3un9_A 113 LDPAGLRTLLPVFLRARKLGLQLN------SLG----PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGN 182 (372)
T ss_dssp CCHHHHHHTHHHHHTEEEEECCSS------CCC----HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhccHhhcCCC------CCC----HHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcC
Confidence 344444444445567899999887 577 766665543 468899999999 88998888776 457
Q ss_pred cccceeecccCCCChHHHHHHHh---cCccCceEEecCCCCChHHHHH---HHhccccccEEEeecccCChhHHHHHHhh
Q 008325 449 EQLEMLSIAFAGNSDKGMLYVLN---GCKKLRKLEIRDSPFGNTALLT---DVGKYETMRSLWMSSCEVTLGGCQTLAKK 522 (570)
Q Consensus 449 ~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 522 (570)
++|++|+|++|.+++.++..++. .+++|+.|+|++|.+++.+... .+..+++|+.|+|++|.|++.|+..+...
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 89999999999999998877654 4789999999999999987543 45577999999999999999999998875
Q ss_pred C
Q 008325 523 M 523 (570)
Q Consensus 523 ~ 523 (570)
.
T Consensus 263 ~ 263 (372)
T 3un9_A 263 G 263 (372)
T ss_dssp C
T ss_pred h
Confidence 4
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.45 E-value=2.3e-16 Score=166.80 Aligned_cols=111 Identities=20% Similarity=0.132 Sum_probs=69.9
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
.+++|++|+|++|.++......+. .+++|++|+|+++ .++.... ..+.++++|++|++++|.+.......+ ..
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N-~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~~----~~ 146 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGN-PIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPI----GH 146 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTC-CCCEECG-GGGTTCTTCCEEECTTSCCCCSTTCCC----TT
T ss_pred CCCCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCC-cCCCCCH-HHhcCCCCCCEEECCCCcCCCCChhhh----hc
Confidence 568899999998866542222222 5788999999877 3433211 123478899999999887665443333 34
Q ss_pred CCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 179 CTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 179 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
+++|+.|+++.+ .+....+......+++|++|+++++.
T Consensus 147 L~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 147 LKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CcccCeeccccC--ccccCCCchhhccchhhhhhcccCcc
Confidence 558899988855 22111122234557788888888764
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=1e-14 Score=146.14 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
++|+.|+++++. ++.. ....++|+.|++++ .++. +...+++|+.|++++|.++. +..
T Consensus 297 ~~L~~L~l~~N~------l~~i---------~~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~l~~--lp~ 354 (454)
T 1jl5_A 297 PNLYYLNASSNE------IRSL---------CDLPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE--VPE 354 (454)
T ss_dssp TTCCEEECCSSC------CSEE---------CCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC--CCC
T ss_pred CcCCEEECcCCc------CCcc---------cCCcCcCCEEECCCCcccc-----ccccCCcCCEEECCCCcccc--ccc
Confidence 567777777663 3310 01124788888877 4432 22335788888888887642 111
Q ss_pred HHhcCccCceEEecCCCCChHH-HHHHHhcc-------------ccccEEEeecccCCh
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTA-LLTDVGKY-------------ETMRSLWMSSCEVTL 513 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~-------------~~L~~L~l~~~~i~~ 513 (570)
.+++|++|++++|.++... +...+..+ ++|+.|++++|+++.
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 3677888888888665510 11112233 789999999998764
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=3.2e-15 Score=143.97 Aligned_cols=110 Identities=9% Similarity=0.038 Sum_probs=54.1
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++... . ..+..+++|++|++++ .++. +..-...+++|+.|++++|.++..+.
T Consensus 214 ~l~~L~~L~Ls~n~------l~~~~-~----~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 214 GLNNLAKLGLSFNS------ISAVD-N----GSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp TCTTCCEEECCSSC------CCEEC-T----TTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCCCEEECCCCc------CceeC-h----hhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCccCh
Confidence 45677777776653 32111 0 1234566777777766 3331 11112345667777777776643322
Q ss_pred HHHHh-----cCccCceEEecCCCCChHHH-HHHHhccccccEEEeeccc
Q 008325 467 LYVLN-----GCKKLRKLEIRDSPFGNTAL-LTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 467 ~~l~~-----~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~ 510 (570)
..+.. ..+.|+.|++++|++....+ ...+..+++++.+++++|+
T Consensus 281 ~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 22211 13556777777776543221 1234556667777776663
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=138.72 Aligned_cols=188 Identities=16% Similarity=0.101 Sum_probs=115.7
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecccc-chhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSI-GDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAI 360 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l 360 (570)
..+++|++|+++++. ++.......+..+++|+.|++.++. ...........+++|++|+++ .+.++....
T Consensus 121 ~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~--- 191 (353)
T 2z80_A 121 KPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-----ASDLQSYEP--- 191 (353)
T ss_dssp TTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-----ETTCCEECT---
T ss_pred CCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-----CCCcCccCH---
Confidence 456788888888775 5432211123567889999998762 111111223357788888888 233332110
Q ss_pred HccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHH
Q 008325 361 SAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQ 439 (570)
Q Consensus 361 ~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~ 439 (570)
.. ...+++|++|+++++. ++ . ........+++|+.|++++ .++..
T Consensus 192 ----------------------~~-l~~l~~L~~L~l~~n~------l~----~-~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 192 ----------------------KS-LKSIQNVSHLILHMKQ------HI----L-LLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp ----------------------TT-TTTCSEEEEEEEECSC------ST----T-HHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ----------------------HH-HhccccCCeecCCCCc------cc----c-chhhhhhhcccccEEECCCCccccc
Confidence 01 1246777888777663 32 1 1122345567788888876 44432
Q ss_pred HHHHH--HhcccccceeecccCCCChHHHHHH---HhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 440 VFLYI--GMYAEQLEMLSIAFAGNSDKGMLYV---LNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 440 ~~~~l--~~~~~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
....+ ....+.++.+++.++.+++.++..+ ...+++|++|++++|.++.... .++..+++|+.|++++|+++.
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccC
Confidence 22111 2345678888999888877765554 3568999999999998774332 235789999999999998754
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=8.6e-13 Score=136.33 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=43.0
Q ss_pred ccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccE
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRS 503 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 503 (570)
++|+.|++++ .++. +...+++|+.|++++|.++... ..+++|+.|++++|.++.. ...+.++++|+.
T Consensus 221 ~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~lp-----~~~~~L~~L~Ls~N~L~~l--p~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTSLP-----MLPSGLLSLSVYRNQLTRL--PESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCCSC--CGGGGGSCTTCE
T ss_pred CCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCcCC-----cccccCcEEeCCCCCCCcC--CHHHhhccccCE
Confidence 4566666655 3332 1133456666666666653211 1356666666666655532 123456666666
Q ss_pred EEeecccCChhHHH
Q 008325 504 LWMSSCEVTLGGCQ 517 (570)
Q Consensus 504 L~l~~~~i~~~~~~ 517 (570)
|+|++|+++.....
T Consensus 289 L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 289 VNLEGNPLSERTLQ 302 (622)
T ss_dssp EECCSCCCCHHHHH
T ss_pred EEecCCCCCCcCHH
Confidence 66666666554433
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=1e-14 Score=139.34 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=52.3
Q ss_pred CccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccccc
Q 008325 424 CKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMR 502 (570)
Q Consensus 424 ~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (570)
+++|+.|++++ .++.-... ...+++|+.|++++|.++. +......+++|+.|++++|++....+...+..+++|+
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred cccCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 45566666655 33321111 2345677777777777653 1222345788888888888888556667778888888
Q ss_pred EEEeecc
Q 008325 503 SLWMSSC 509 (570)
Q Consensus 503 ~L~l~~~ 509 (570)
.|+++++
T Consensus 266 ~l~l~~~ 272 (317)
T 3o53_A 266 TVAKQTV 272 (317)
T ss_dssp HHHHHHH
T ss_pred EEECCCc
Confidence 8888766
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=1.2e-15 Score=161.26 Aligned_cols=131 Identities=16% Similarity=0.065 Sum_probs=90.0
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
+++++|+|+++.++.-....+. .+++|++|+|+++ .++...- ..+.++++|++|++++|.+.......+ ..++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N-~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~f----~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAF----SGLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTCCCCEECGGGG----TTCT
T ss_pred cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCC-cCCCcCh-hHhcCCCCCCEEEccCCcCCCCCHHHh----cCCC
Confidence 5799999999977653222233 6789999999988 4443211 123478999999999998765544333 3556
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCch-hHHHHHhhCCCceeecCcccc
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLD-TLQKLLMRAPQLVDLGIGSFV 242 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~l~~~~~~~~~L~~L~l~~~~ 242 (570)
+|++|+++.+. ..+.. ..+..+++|++|+++++.-.. ..+..+..+++|++|.+....
T Consensus 125 ~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 125 SLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 99999999652 11111 123567899999999875221 245667788999999987654
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=132.47 Aligned_cols=166 Identities=11% Similarity=-0.019 Sum_probs=96.1
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHc
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISA 362 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~ 362 (570)
.+++|++|+++++..+..... ..+..+++|+.|++.++.-..........+++|++|+++ .+.++...
T Consensus 147 ~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-----~n~l~~~~------ 214 (353)
T 2z80_A 147 HLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH-----MKQHILLL------ 214 (353)
T ss_dssp TCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE-----CSCSTTHH------
T ss_pred cCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC-----CCccccch------
Confidence 456777777776632332211 112456777777777652221111222356778888888 33332111
Q ss_pred cChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHH
Q 008325 363 GCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVF 441 (570)
Q Consensus 363 ~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~ 441 (570)
..+...+++|+.|+++++.. +... ...+ .....++.++.+++++ .+++..+
T Consensus 215 --------------------~~~~~~~~~L~~L~L~~n~l------~~~~-~~~l-~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 215 --------------------EIFVDVTSSVECLELRDTDL------DTFH-FSEL-STGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp --------------------HHHHHHTTTEEEEEEESCBC------TTCC-CC-------CCCCCCEEEEESCBCCHHHH
T ss_pred --------------------hhhhhhcccccEEECCCCcc------cccc-cccc-ccccccchhhccccccccccCcch
Confidence 11222567888888887743 2111 1111 1234567788888887 7777766
Q ss_pred HHHH---hcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChH
Q 008325 442 LYIG---MYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNT 489 (570)
Q Consensus 442 ~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 489 (570)
..+. ..+++|+.|++++|.++.... .+...+++|++|++++|++...
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccCc
Confidence 6553 457899999999999853221 1225689999999999976643
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.36 E-value=7.4e-14 Score=134.38 Aligned_cols=86 Identities=7% Similarity=-0.054 Sum_probs=47.3
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHH-----hcccccceeecccCCC
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIG-----MYAEQLEMLSIAFAGN 461 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~-----~~~~~L~~L~l~~~~i 461 (570)
.+++|+.|+++++. ++..+ . .+..+++|++|++++ .++......+. ...+.|+.|++.++++
T Consensus 238 ~l~~L~~L~L~~N~------l~~lp--~----~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 238 NTPHLRELHLNNNK------LVKVP--G----GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp GSTTCCEEECCSSC------CSSCC--T----TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCCCCCEEECCCCc------CccCC--h----hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 46777777777663 32111 1 134567788888876 44432222221 1246788888988887
Q ss_pred ChHHHH-HHHhcCccCceEEecCCC
Q 008325 462 SDKGML-YVLNGCKKLRKLEIRDSP 485 (570)
Q Consensus 462 ~~~~~~-~l~~~~~~L~~L~l~~~~ 485 (570)
....+. .....+++++.|++++|+
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccCccccccccceeEEEecccC
Confidence 443221 223457889999998873
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.34 E-value=1.2e-13 Score=138.43 Aligned_cols=300 Identities=16% Similarity=0.083 Sum_probs=154.7
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
.++++|+++++.++. +....++|++|+++++ .++. +. ...++|++|++++|.+.... ...+
T Consensus 71 ~~l~~L~l~~~~l~~-----lp~~~~~L~~L~l~~n-~l~~--lp---~~~~~L~~L~l~~n~l~~l~--------~~~~ 131 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-----LPELPPHLESLVASCN-SLTE--LP---ELPQSLKSLLVDNNNLKALS--------DLPP 131 (454)
T ss_dssp HTCSEEECTTSCCSC-----CCSCCTTCSEEECCSS-CCSS--CC---CCCTTCCEEECCSSCCSCCC--------SCCT
T ss_pred cCCCEEEecCCcccc-----CCCCcCCCCEEEccCC-cCCc--cc---cccCCCcEEECCCCccCccc--------CCCC
Confidence 456777777765443 1112356777777655 3332 11 13467777777776554221 1124
Q ss_pred cccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhc
Q 008325 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKC 260 (570)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 260 (570)
+|++|+++++ .+.. +.. ...+++|++|+++++. +.+++ ...++|+.|.++......
T Consensus 132 ~L~~L~L~~n--~l~~--lp~-~~~l~~L~~L~l~~N~-l~~lp---~~~~~L~~L~L~~n~l~~--------------- 187 (454)
T 1jl5_A 132 LLEYLGVSNN--QLEK--LPE-LQNSSFLKIIDVDNNS-LKKLP---DLPPSLEFIAAGNNQLEE--------------- 187 (454)
T ss_dssp TCCEEECCSS--CCSS--CCC-CTTCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSS---------------
T ss_pred CCCEEECcCC--CCCC--Ccc-cCCCCCCCEEECCCCc-CcccC---CCcccccEEECcCCcCCc---------------
Confidence 6777777754 1111 111 3456677777776653 22111 112355555554332111
Q ss_pred CCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCcee
Q 008325 261 KSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQEL 340 (570)
Q Consensus 261 ~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 340 (570)
++. ...+++|++|+++++. ++.. ....++|+.|++.++.-. .+.. ...+++|++|
T Consensus 188 ----------------l~~-~~~l~~L~~L~l~~N~-l~~l-----~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L 242 (454)
T 1jl5_A 188 ----------------LPE-LQNLPFLTAIYADNNS-LKKL-----PDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTI 242 (454)
T ss_dssp ----------------CCC-CTTCTTCCEEECCSSC-CSSC-----CCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred ----------------Ccc-ccCCCCCCEEECCCCc-CCcC-----CCCcCcccEEECcCCcCC-cccc-cCCCCCCCEE
Confidence 000 1334455555555544 3220 011235555555554111 1111 2244555555
Q ss_pred ecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH
Q 008325 341 RVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI 420 (570)
Q Consensus 341 ~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~ 420 (570)
+++ .+.++.. ....++|+.|....+.++. +....++|+.|+++++. ++..+
T Consensus 243 ~l~-----~N~l~~l-----~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N~------l~~l~-------- 293 (454)
T 1jl5_A 243 YAD-----NNLLKTL-----PDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSENI------FSGLS-------- 293 (454)
T ss_dssp ECC-----SSCCSSC-----CSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC------CSEES--------
T ss_pred ECC-----CCcCCcc-----cccccccCEEECCCCcccc-----cCcccCcCCEEECcCCc------cCccc--------
Confidence 555 2222210 0112344444111222221 11234789999988773 43110
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccc
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYE 499 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (570)
...++|+.|++++ .++. +....++|+.|++++|.++. + ...+++|+.|++++|.++... . .++
T Consensus 294 -~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--l---p~~~~~L~~L~L~~N~l~~lp--~---~l~ 357 (454)
T 1jl5_A 294 -ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--L---PALPPRLERLIASFNHLAEVP--E---LPQ 357 (454)
T ss_dssp -CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSCCC--C---CCT
T ss_pred -CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--c---cccCCcCCEEECCCCcccccc--c---hhh
Confidence 1126899999988 5443 11223589999999999754 1 123689999999999877422 1 578
Q ss_pred cccEEEeecccCCh
Q 008325 500 TMRSLWMSSCEVTL 513 (570)
Q Consensus 500 ~L~~L~l~~~~i~~ 513 (570)
+|+.|++++|+++.
T Consensus 358 ~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 358 NLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSS
T ss_pred hccEEECCCCCCCc
Confidence 99999999998765
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=3e-13 Score=129.15 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=121.7
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 361 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~ 361 (570)
..+++|++|+++++. ++.. ...++|+.|++.++.-... ....+++|++|+++ .+.++...-
T Consensus 77 ~~l~~L~~L~Ls~n~-l~~l------~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~-----~N~l~~~~~---- 137 (317)
T 3o53_A 77 ESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAANNNISRV---SCSRGQGKKNIYLA-----NNKITMLRD---- 137 (317)
T ss_dssp TTCTTCCEEECCSSE-EEEE------EECTTCCEEECCSSCCSEE---EECCCSSCEEEECC-----SSCCCSGGG----
T ss_pred hhcCCCCEEECcCCc-cccc------cCCCCcCEEECCCCccCCc---CccccCCCCEEECC-----CCCCCCccc----
Confidence 456678888887775 5432 2347788888777521110 01235778888888 334432110
Q ss_pred ccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHH
Q 008325 362 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQV 440 (570)
Q Consensus 362 ~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~ 440 (570)
.. ...+++|+.|+++++ .++ +.....+...+++|++|++++ .++..
T Consensus 138 ---------------------~~-~~~l~~L~~L~Ls~N------~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 138 ---------------------LD-EGCRSRVQYLDLKLN------EID----TVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp ---------------------BC-TGGGSSEEEEECTTS------CCC----EEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred ---------------------hh-hhccCCCCEEECCCC------CCC----cccHHHHhhccCcCCEEECCCCcCccc-
Confidence 00 125688999988877 444 322333445678999999988 44432
Q ss_pred HHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHH
Q 008325 441 FLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLA 520 (570)
Q Consensus 441 ~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~ 520 (570)
.. ...+++|+.|++++|.++..... ...+++|++|++++|.++... ..+..+++|+.|++++|+++...+....
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 185 -KG-QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred -cc-ccccccCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 11 12378999999999998543222 356899999999999888532 3457889999999999999855665555
Q ss_pred hhCCceE
Q 008325 521 KKMPRLN 527 (570)
Q Consensus 521 ~~~p~~~ 527 (570)
..+|.++
T Consensus 259 ~~~~~L~ 265 (317)
T 3o53_A 259 SKNQRVQ 265 (317)
T ss_dssp HTCHHHH
T ss_pred hccccce
Confidence 5555444
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.29 E-value=1.1e-11 Score=128.03 Aligned_cols=240 Identities=18% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++|++|++++|.++. +...+++|++|+++++. ++. +. ..+++|++|++++|.+... +...+
T Consensus 61 ~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~l~~l--------~~~l~ 121 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-----LPALPPELRTLEVSGNQ-LTS--LP---VLPPGLLELSIFSNPLTHL--------PALPS 121 (622)
T ss_dssp TTCSEEEECSCCCSC-----CCCCCTTCCEEEECSCC-CSC--CC---CCCTTCCEEEECSCCCCCC--------CCCCT
T ss_pred CCCcEEEecCCCCCC-----CCCcCCCCCEEEcCCCc-CCc--CC---CCCCCCCEEECcCCcCCCC--------CCCCC
Confidence 678888888886653 22245778888887763 332 11 1567888888887765432 22345
Q ss_pred cccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhc
Q 008325 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKC 260 (570)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 260 (570)
+|+.|+++++. +.. + ....++|++|+++++. +..
T Consensus 122 ~L~~L~L~~N~--l~~--l---p~~l~~L~~L~Ls~N~-l~~-------------------------------------- 155 (622)
T 3g06_A 122 GLCKLWIFGNQ--LTS--L---PVLPPGLQELSVSDNQ-LAS-------------------------------------- 155 (622)
T ss_dssp TCCEEECCSSC--CSC--C---CCCCTTCCEEECCSSC-CSC--------------------------------------
T ss_pred CcCEEECCCCC--CCc--C---CCCCCCCCEEECcCCc-CCC--------------------------------------
Confidence 77777777441 110 0 0123566666666553 100
Q ss_pred CCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCcee
Q 008325 261 KSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQEL 340 (570)
Q Consensus 261 ~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 340 (570)
+ ....++|+.|+++++. ++... ..+++|+.|+++++.-.. +....++|+.|
T Consensus 156 -----------l--------~~~~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L~Ls~N~l~~----l~~~~~~L~~L 206 (622)
T 3g06_A 156 -----------L--------PALPSELCKLWAYNNQ-LTSLP-----MLPSGLQELSVSDNQLAS----LPTLPSELYKL 206 (622)
T ss_dssp -----------C--------CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSC----CCCCCTTCCEE
T ss_pred -----------c--------CCccCCCCEEECCCCC-CCCCc-----ccCCCCcEEECCCCCCCC----CCCccchhhEE
Confidence 0 0122456666666554 43311 334566666666542111 11123567777
Q ss_pred ecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH
Q 008325 341 RVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI 420 (570)
Q Consensus 341 ~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~ 420 (570)
+++ .+.++. . ...+++|+.|+++++. ++..+
T Consensus 207 ~L~-----~N~l~~---------l---------------------~~~~~~L~~L~Ls~N~------L~~lp-------- 237 (622)
T 3g06_A 207 WAY-----NNRLTS---------L---------------------PALPSGLKELIVSGNR------LTSLP-------- 237 (622)
T ss_dssp ECC-----SSCCSS---------C---------------------CCCCTTCCEEECCSSC------CSCCC--------
T ss_pred ECc-----CCcccc---------c---------------------CCCCCCCCEEEccCCc------cCcCC--------
Confidence 776 223321 0 0123677777777663 33211
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHH
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTAL 491 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 491 (570)
..+++|+.|++++ .++. +...+++|+.|++++|.++. +.....++++|+.|++++|+++....
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCS--CCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCc--CCHHHhhccccCEEEecCCCCCCcCH
Confidence 3456788888877 4332 11246788888888888752 22223567888888888888876554
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.28 E-value=2.3e-14 Score=138.04 Aligned_cols=289 Identities=12% Similarity=0.045 Sum_probs=144.4
Q ss_pred CCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCCc
Q 008325 102 GLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 181 (570)
Q Consensus 102 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 181 (570)
+++.++++++.++.-. ....++|+.|+++++ .++...... +..+++|++|++++|.+.......+ ..+++
T Consensus 34 ~l~~l~~~~~~l~~ip----~~~~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP----KEISPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNNKISKIHEKAF----SPLRK 103 (332)
T ss_dssp ETTEEECCSSCCSSCC----SCCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGS----TTCTT
T ss_pred cCCEEECCCCCccccC----CCCCCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCCccCccCHhHh----hCcCC
Confidence 5777777776543210 012356888888766 343221111 2367788888888776654433323 23447
Q ss_pred ccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcC
Q 008325 182 LVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCK 261 (570)
Q Consensus 182 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (570)
|++|+++++ .+. .+.. ...++|++|+++++. ++
T Consensus 104 L~~L~L~~n--~l~--~l~~--~~~~~L~~L~l~~n~--------------i~--------------------------- 136 (332)
T 2ft3_A 104 LQKLYISKN--HLV--EIPP--NLPSSLVELRIHDNR--------------IR--------------------------- 136 (332)
T ss_dssp CCEEECCSS--CCC--SCCS--SCCTTCCEEECCSSC--------------CC---------------------------
T ss_pred CCEEECCCC--cCC--ccCc--cccccCCEEECCCCc--------------cC---------------------------
Confidence 777777744 111 0000 011455555555442 00
Q ss_pred CcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHH-HHHhcCCCCCEEEeccccchhhHHHHHhcCCCCcee
Q 008325 262 SIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELI-KLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQEL 340 (570)
Q Consensus 262 ~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 340 (570)
.+. ......+++|++|+++++. ++..+.. ..+..+ +|+.|++.++.-.. +.. ...++|++|
T Consensus 137 ---------~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~--~~~~~L~~L 198 (332)
T 2ft3_A 137 ---------KVP----KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK--DLPETLNEL 198 (332)
T ss_dssp ---------CCC----SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS--SSCSSCSCC
T ss_pred ---------ccC----HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCc-cCc--cccCCCCEE
Confidence 011 1123456778888887776 5432111 111222 66666666542111 000 012466666
Q ss_pred ecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHH
Q 008325 341 RVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI 420 (570)
Q Consensus 341 ~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~ 420 (570)
+++ .+.++... ...+ ..+++|+.|+++++. ++... . ..
T Consensus 199 ~l~-----~n~i~~~~-------------------------~~~l-~~l~~L~~L~L~~N~------l~~~~-~----~~ 236 (332)
T 2ft3_A 199 HLD-----HNKIQAIE-------------------------LEDL-LRYSKLYRLGLGHNQ------IRMIE-N----GS 236 (332)
T ss_dssp BCC-----SSCCCCCC-------------------------TTSS-TTCTTCSCCBCCSSC------CCCCC-T----TG
T ss_pred ECC-----CCcCCccC-------------------------HHHh-cCCCCCCEEECCCCc------CCcCC-h----hH
Confidence 666 22222110 0011 256778888877663 33111 1 12
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhc-----CccCceEEecCCCCChHHH-HH
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNG-----CKKLRKLEIRDSPFGNTAL-LT 493 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~~-~~ 493 (570)
+..+++|+.|++++ .++. +..-...+++|+.|++++|.++..+...+... .+.|+.|++++|++....+ ..
T Consensus 237 ~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GGGCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred hhCCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 35667788888876 4431 11112446778888888887755443333211 3567888888886653221 13
Q ss_pred HHhccccccEEEeecc
Q 008325 494 DVGKYETMRSLWMSSC 509 (570)
Q Consensus 494 ~~~~~~~L~~L~l~~~ 509 (570)
.+..+++|+.|++++|
T Consensus 315 ~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGTTBCCSTTEEC---
T ss_pred cccccchhhhhhcccc
Confidence 4567778888888776
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.27 E-value=6.4e-13 Score=133.20 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=19.9
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecc
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILD 320 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~ 320 (570)
.+++|++|+++++. +...... .+..+++|+.|++.+
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPSY-AFNRIPSLRRLDLGE 169 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECTT-TTTTCTTCCEEECCC
T ss_pred ccccCceeeCCCCc-ccccCHH-HhhhCcccCEeCCCC
Confidence 45677777777765 4432111 124456666666655
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.27 E-value=7.4e-13 Score=133.24 Aligned_cols=62 Identities=11% Similarity=0.014 Sum_probs=32.5
Q ss_pred ccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 448 AEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
+++|+.|++++|.++......+ .++++|+.|+|++|.++.... ..+..+++|+.|+|++|++
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCE
T ss_pred ccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCc
Confidence 4556666666665533222222 345666666666665543221 2334566666666666653
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=1.8e-13 Score=138.51 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=31.6
Q ss_pred ccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEee
Q 008325 448 AEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMS 507 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 507 (570)
+++|+.|++++|.++. +......+++|+.|++++|++....+...+..++.|+.+.++
T Consensus 213 l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4556666666666532 111123456666667766666644444555566666555553
No 68
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.25 E-value=1.2e-11 Score=103.68 Aligned_cols=100 Identities=12% Similarity=0.204 Sum_probs=86.0
Q ss_pred CCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC--cccHHHHHHHHhc---ccccceeecccCC-CChH
Q 008325 391 NFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG--LLTDQVFLYIGMY---AEQLEMLSIAFAG-NSDK 464 (570)
Q Consensus 391 ~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~--~i~~~~~~~l~~~---~~~L~~L~l~~~~-i~~~ 464 (570)
+|+.|++++| .|+ +.++..+ ..|++|++|+|++ .|+|.++..++.. +++|++|+|++|. |||.
T Consensus 62 ~L~~LDLs~~------~It----d~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDS------CIM----SIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESC------CCC----GGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCC------Ccc----HHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 5888888877 588 8888875 7899999999998 6999999999873 6799999999997 8999
Q ss_pred HHHHHHhcCccCceEEecCC-CCChHH--HHHHHhcccccc
Q 008325 465 GMLYVLNGCKKLRKLEIRDS-PFGNTA--LLTDVGKYETMR 502 (570)
Q Consensus 465 ~~~~l~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~~L~ 502 (570)
|+.++ ..|++|++|++++| .+++.+ ...+.+.+|+++
T Consensus 131 Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 131 GIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 99998 57999999999999 799876 334557888775
No 69
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.25 E-value=2.8e-11 Score=116.20 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=69.7
Q ss_pred cccccceeecccCCCChHHHHHHHh--cCccCceEEecCCCCChHHHHHHH---hccccccEEEeecccCChhHHHHHHh
Q 008325 447 YAEQLEMLSIAFAGNSDKGMLYVLN--GCKKLRKLEIRDSPFGNTALLTDV---GKYETMRSLWMSSCEVTLGGCQTLAK 521 (570)
Q Consensus 447 ~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~l~~ 521 (570)
.+|+|+.|++.+|.+++.+...++. .+++|++|+|+.|.+++.+...+. .++++|+.|++++|.|++++++.+.+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4688999999999988877767765 378999999999999998755443 56899999999999999999999998
Q ss_pred hCCceEEEEeec
Q 008325 522 KMPRLNVEIINE 533 (570)
Q Consensus 522 ~~p~~~~~~~~~ 533 (570)
.+ .+++++...
T Consensus 330 al-g~~~~~~~~ 340 (362)
T 2ra8_A 330 SL-PMKIDVSDS 340 (362)
T ss_dssp HC-CSEEECCSB
T ss_pred Hc-CCEEEecCC
Confidence 77 445655544
No 70
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.25 E-value=1.4e-10 Score=100.46 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=103.6
Q ss_pred HHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHH---hcCccCcEEecCC-cccHHHHHHHHhc---ccccc
Q 008325 380 AALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV---QSCKRLRRLSLSG-LLTDQVFLYIGMY---AEQLE 452 (570)
Q Consensus 380 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~L~~L~l~~-~i~~~~~~~l~~~---~~~L~ 452 (570)
+.+..+...+++|++|+|+++. .++ +.++..++ ...++|++|+|++ .+++.+...++.. .++|+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~-----~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~ 96 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIM-----NIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCT-----TCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCC-----CCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC
Confidence 3455556678999999998763 466 76665554 5578899999999 8999998887654 57899
Q ss_pred eeecccCCCChHHHHHHHhc---CccCceEEe--cCCCCChHHH---HHHHhccccccEEEeecccCChhH
Q 008325 453 MLSIAFAGNSDKGMLYVLNG---CKKLRKLEI--RDSPFGNTAL---LTDVGKYETMRSLWMSSCEVTLGG 515 (570)
Q Consensus 453 ~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~i~~~~ 515 (570)
+|+|++|.|++.|...++.. +++|++|+| ++|.+++.+. ...+...++|++|+|++|.+++.|
T Consensus 97 ~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 97 SLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp EEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 99999999999999888766 678999999 8899999884 445677789999999999998776
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.24 E-value=4e-14 Score=136.32 Aligned_cols=270 Identities=13% Similarity=0.025 Sum_probs=163.8
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
+++++|+++++.++......+. .+++|++|+++++ .++...... +..+++|++|++++|.+...... ..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~~-------~~~ 123 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKNHLVEIPPN-------LPS 123 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSSCCCSCCSS-------CCT
T ss_pred CCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCCcCCccCcc-------ccc
Confidence 6899999999976643222333 6789999999987 454322222 24789999999999987643321 126
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
+|++|+++.+. ..+.. .....+++|+.|+++++. ++...
T Consensus 124 ~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~--------------l~~~~---------------------- 163 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNP--------------LENSG---------------------- 163 (332)
T ss_dssp TCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCC--------------CBGGG----------------------
T ss_pred cCCEEECCCCccCccCH----hHhCCCccCCEEECCCCc--------------cccCC----------------------
Confidence 99999999652 11111 123457788888887764 10000
Q ss_pred cCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCce
Q 008325 260 CKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQE 339 (570)
Q Consensus 260 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 339 (570)
.. ......+ +|++|+++++. ++.... ...++|+.|++.++.-..........+++|+.
T Consensus 164 ------------~~----~~~~~~l-~L~~L~l~~n~-l~~l~~----~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 164 ------------FE----PGAFDGL-KLNYLRISEAK-LTGIPK----DLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp ------------SC----TTSSCSC-CCSCCBCCSSB-CSSCCS----SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred ------------CC----cccccCC-ccCEEECcCCC-CCccCc----cccCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 00 0111223 89999999876 544111 12378999999986322211112336789999
Q ss_pred eecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHH
Q 008325 340 LRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGA 419 (570)
Q Consensus 340 L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~ 419 (570)
|+++ .+.++... .. ....+++|+.|+++++. ++..+ .
T Consensus 222 L~L~-----~N~l~~~~----------------------~~----~~~~l~~L~~L~L~~N~------l~~lp--~---- 258 (332)
T 2ft3_A 222 LGLG-----HNQIRMIE----------------------NG----SLSFLPTLRELHLDNNK------LSRVP--A---- 258 (332)
T ss_dssp CBCC-----SSCCCCCC----------------------TT----GGGGCTTCCEEECCSSC------CCBCC--T----
T ss_pred EECC-----CCcCCcCC----------------------hh----HhhCCCCCCEEECCCCc------CeecC--h----
Confidence 9999 33333211 00 11267899999998874 33211 1
Q ss_pred HHhcCccCcEEecCC-cccHHHHHHHHhc-----ccccceeecccCCCChHHHH-HHHhcCccCceEEecCCC
Q 008325 420 IVQSCKRLRRLSLSG-LLTDQVFLYIGMY-----AEQLEMLSIAFAGNSDKGML-YVLNGCKKLRKLEIRDSP 485 (570)
Q Consensus 420 ~~~~~~~L~~L~l~~-~i~~~~~~~l~~~-----~~~L~~L~l~~~~i~~~~~~-~l~~~~~~L~~L~l~~~~ 485 (570)
.+..+++|+.|++++ .++......+... .+.|+.|++.+|+++...+. .....+++|+.|++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 145788999999987 5554433333221 46799999999987532222 233568999999999873
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.23 E-value=1.1e-12 Score=124.95 Aligned_cols=188 Identities=16% Similarity=0.110 Sum_probs=107.2
Q ss_pred hCCCCCEEecCCCCCCChH----HHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHH-HH
Q 008325 283 VCQNLTSLNLSYAPGIHGN----ELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEE-GL 357 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~----~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~-~l 357 (570)
.+++|++|+++++. ++.. ....+ ..+++|+.|+++++.-..........+++|++|+++ .+.+... ++
T Consensus 115 ~~~~L~~L~Ls~n~-i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-----~N~l~~~~~~ 187 (310)
T 4glp_A 115 TGLALSSLRLRNVS-WATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS-----DNPGLGERGL 187 (310)
T ss_dssp CCBCCSSCEEESCC-CSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC-----SCTTCHHHHH
T ss_pred cCCCCCEEEeeccc-ccchhhhhHHHHh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC-----CCCCccchhh
Confidence 45677777777766 5431 11122 256777777777652221111222356778888888 3333321 11
Q ss_pred HHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cc
Q 008325 358 VAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LL 436 (570)
Q Consensus 358 ~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i 436 (570)
... .....+++|++|+++++. ++.. ......++..+++|++|++++ .+
T Consensus 188 ~~~-----------------------~~~~~l~~L~~L~Ls~N~------l~~l--~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 188 MAA-----------------------LCPHKFPAIQNLALRNTG------METP--TGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp HTT-----------------------SCTTSSCCCCSCBCCSSC------CCCH--HHHHHHHHHHTCCCSSEECTTSCC
T ss_pred hHH-----------------------HhhhcCCCCCEEECCCCC------CCch--HHHHHHHHhcCCCCCEEECCCCCC
Confidence 100 001246677777777663 3310 112223456667788888776 44
Q ss_pred cHHHHHHHHh--cccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChh
Q 008325 437 TDQVFLYIGM--YAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLG 514 (570)
Q Consensus 437 ~~~~~~~l~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 514 (570)
++.....+.. ..++|++|++++|.++.. .. .-.++|+.|++++|.++.... ...+++|+.|++++|++++.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l--p~--~~~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAGLEQV--PK--GLPAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSCCCSC--CS--CCCSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSCC
T ss_pred CccchhhHHhccCcCcCCEEECCCCCCCch--hh--hhcCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCCC
Confidence 4321111111 136889999988887521 11 114789999999998876322 46889999999999998875
Q ss_pred H
Q 008325 515 G 515 (570)
Q Consensus 515 ~ 515 (570)
|
T Consensus 310 g 310 (310)
T 4glp_A 310 G 310 (310)
T ss_dssp C
T ss_pred C
Confidence 3
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=2.8e-12 Score=121.66 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=115.6
Q ss_pred CCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHcc
Q 008325 284 CQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAG 363 (570)
Q Consensus 284 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~ 363 (570)
+++|++|+++++. +.... . +..+++|+.|+++++.-.... . ...+++|++|+++ .+.++... . ...
T Consensus 40 l~~L~~L~l~~~~-i~~l~--~-~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~-----~n~l~~~~--~-~~~ 105 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE--G-VQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELS-----GNPLKNVS--A-IAG 105 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECC-----SCCCSCCG--G-GTT
T ss_pred cCCcCEEEeeCCC-ccCch--h-hhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEcc-----CCcCCCch--h-hcC
Confidence 3456666666554 33311 1 244566666666554111100 1 3345566666666 22233221 1 122
Q ss_pred ChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHH
Q 008325 364 CPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFL 442 (570)
Q Consensus 364 ~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~ 442 (570)
+++|+.|....+.+++.. . ...+++|+.|+++++. ++..+ . +..+++|+.|++++ .+++...
T Consensus 106 l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~------l~~~~---~----l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ------ITNIS---P----LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC------CCCCG---G----GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc------cCcCc---c----ccCCCCccEEEccCCcCCCChh-
Confidence 555555522222333211 1 2378899999998874 44211 1 66789999999988 5554221
Q ss_pred HHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 443 YIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 443 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
...+++|+.|++++|.+++... ...+++|++|++++|.+++.. .+..+++|+.|++++|+++.
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 4568899999999999854332 367899999999999887654 25789999999999998765
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=1.2e-13 Score=129.82 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=80.3
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++..+ . ..+..+++|+.|++++ .++..... ....+++|+.|++++|.++....
T Consensus 127 ~l~~L~~L~l~~n~------l~~~~-~----~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 127 GLAALQYLYLQDNA------LQALP-D----DTFRDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp TCTTCCEEECCSSC------CCCCC-T----TTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECT
T ss_pred CCcCCCEEECCCCc------ccccC-H----hHhccCCCccEEECCCCcccccCHH-HhcCccccCEEECCCCcccccCH
Confidence 67899999998874 33111 1 1245678999999988 44432211 12347899999999999865433
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
..+ ..+++|+.|++++|.+++... ..+..+++|+.|++++|+++
T Consensus 195 ~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 195 HAF-RDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTT-TTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred hHc-cCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCcc
Confidence 333 568999999999998876543 45788999999999999864
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=7.7e-14 Score=132.92 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=112.8
Q ss_pred hcCCccccc-CCcccChhhHHhH-hhhCCCCCEEecCCCCCCChH--HHHHHHhc-CCCCCEEEeccccchhhHHHHHhc
Q 008325 259 KCKSIRSLS-GFLEVVPCCLSAI-HPVCQNLTSLNLSYAPGIHGN--ELIKLIRF-CRKLERLWILDSIGDRGLGVVAFT 333 (570)
Q Consensus 259 ~~~~L~~L~-~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~-~~~L~~L~l~~~~~~~~~~~~~~~ 333 (570)
.+++|+.|. ....+.......+ ...+++|++|+++++. ++.. .+..+... .++|+.|+++++.-..........
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 456666665 2222222111111 2456677777777665 5443 12121111 266777777765221111112234
Q ss_pred CCCCceeecccCCCCCCCcCHH-HHHHHHccChhhHHHHHhcccCChHHHHHH-HhcCCCCceeeeeeecCCCCCCCCCC
Q 008325 334 CKELQELRVFPSGVDNAAVTEE-GLVAISAGCPKLHSLLYFCQQMTNAALITV-AKNNSNFTRFRLCILDREKPDPVTMQ 411 (570)
Q Consensus 334 ~~~L~~L~l~~~~~~~~~l~~~-~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~~i~~~ 411 (570)
+++|++|+++ .+.+... ++ ...+ ...+++|+.|+++++. ++..
T Consensus 172 l~~L~~L~Ls-----~N~l~~~~~~------------------------~~~~~~~~l~~L~~L~L~~N~------l~~~ 216 (312)
T 1wwl_A 172 FPALSTLDLS-----DNPELGERGL------------------------ISALCPLKFPTLQVLALRNAG------METP 216 (312)
T ss_dssp CSSCCEEECC-----SCTTCHHHHH------------------------HHHSCTTSCTTCCEEECTTSC------CCCH
T ss_pred CCCCCEEECC-----CCCcCcchHH------------------------HHHHHhccCCCCCEEECCCCc------Ccch
Confidence 6677777777 2222221 11 0111 1356788888887763 3310
Q ss_pred cchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHH
Q 008325 412 PLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTA 490 (570)
Q Consensus 412 ~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 490 (570)
......+...+++|+.|++++ .++..........+++|+.|++++|.++. +..- -.++|++|++++|.+++..
T Consensus 217 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~--~~~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 217 --SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKG--LPAKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp --HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSS--CCSEEEEEECCSSCCCSCC
T ss_pred --HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhh--ccCCceEEECCCCCCCCCh
Confidence 122234556778888888877 44442211111235788888888888752 1111 0267888888888777652
Q ss_pred HHHHHhccccccEEEeecccCChh
Q 008325 491 LLTDVGKYETMRSLWMSSCEVTLG 514 (570)
Q Consensus 491 ~~~~~~~~~~L~~L~l~~~~i~~~ 514 (570)
. +..+++|+.|++++|++++.
T Consensus 291 --~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 291 --S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --C-TTTSCEEEEEECTTCTTTCC
T ss_pred --h-HhhCCCCCEEeccCCCCCCC
Confidence 2 56788888888888887754
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=2.9e-13 Score=136.97 Aligned_cols=185 Identities=12% Similarity=0.086 Sum_probs=120.1
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecccc-chhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSI-GDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAI 360 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l 360 (570)
..+++|++|+++++. +++. ...++|+.|++.++. .... ...+++|+.|+++ .+.++...
T Consensus 77 ~~l~~L~~L~Ls~N~-l~~l------~~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~-----~N~l~~~~---- 136 (487)
T 3oja_A 77 ESLSTLRTLDLNNNY-VQEL------LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLA-----NNKITMLR---- 136 (487)
T ss_dssp TTCTTCCEEECCSSE-EEEE------EECTTCCEEECCSSCCCCEE----ECCCSSCEEEECC-----SSCCCSGG----
T ss_pred ccCCCCCEEEecCCc-CCCC------CCCCCcCEEECcCCcCCCCC----ccccCCCCEEECC-----CCCCCCCC----
Confidence 456788888888776 5432 234778888887752 1111 1135778888887 33343211
Q ss_pred HccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHH
Q 008325 361 SAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQ 439 (570)
Q Consensus 361 ~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~ 439 (570)
...+ ..+++|+.|+++++ .++ ......+...+++|+.|++++ .++..
T Consensus 137 ---------------------~~~~-~~l~~L~~L~Ls~N------~l~----~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 137 ---------------------DLDE-GCRSRVQYLDLKLN------EID----TVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp ---------------------GBCG-GGGSSEEEEECTTS------CCC----EEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred ---------------------chhh-cCCCCCCEEECCCC------CCC----CcChHHHhhhCCcccEEecCCCccccc
Confidence 0011 25788999999877 454 222333445788999999988 54432
Q ss_pred HHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHH
Q 008325 440 VFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTL 519 (570)
Q Consensus 440 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 519 (570)
.. ...+++|+.|++++|.++..... ...+++|+.|++++|.++.. ...+..+++|+.|++++|+++...+...
T Consensus 185 --~~-~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 185 --KG-QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp --EC-CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred --cc-cccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCcCccc--chhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 11 12378999999999998543222 35689999999999988852 2346788999999999999885555444
Q ss_pred HhhCCc
Q 008325 520 AKKMPR 525 (570)
Q Consensus 520 ~~~~p~ 525 (570)
...+|.
T Consensus 258 ~~~l~~ 263 (487)
T 3oja_A 258 FSKNQR 263 (487)
T ss_dssp HTTCHH
T ss_pred HHhCCC
Confidence 444443
No 77
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=8.1e-14 Score=132.59 Aligned_cols=87 Identities=14% Similarity=0.050 Sum_probs=47.9
Q ss_pred hcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcC-ccCceEEecCCCCChH-HHHHHHhcc
Q 008325 422 QSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGC-KKLRKLEIRDSPFGNT-ALLTDVGKY 498 (570)
Q Consensus 422 ~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~~~~-~~~~~~~~~ 498 (570)
..+++|+.|++++ .++...... ...+++|+.|++++|.++......+ ..+ ++|++|++++|+++.. .+..+.+.+
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l 273 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFACTCEHQSFLQWI 273 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred cCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCeecccChHHHHHHH
Confidence 4556677777766 333211111 2346788888888888754333223 334 4899999999876432 222333444
Q ss_pred ccccEEEeeccc
Q 008325 499 ETMRSLWMSSCE 510 (570)
Q Consensus 499 ~~L~~L~l~~~~ 510 (570)
.+.+.+.+..+.
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T 2z66_A 274 KDQRQLLVEVER 285 (306)
T ss_dssp HHTGGGBSCGGG
T ss_pred Hhhhhhhccccc
Confidence 444444444443
No 78
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.18 E-value=5.4e-12 Score=120.80 Aligned_cols=227 Identities=19% Similarity=0.167 Sum_probs=135.2
Q ss_pred hhCCCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCC
Q 008325 59 GRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEG 138 (570)
Q Consensus 59 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 138 (570)
...++++.|+++++.. . -+|... ..+++|++|+++++.++. ....+ ..+++|++|+++++ .
T Consensus 78 ~~~~~l~~L~L~~n~l-~---~lp~~l------------~~l~~L~~L~L~~n~l~~-lp~~~-~~l~~L~~L~Ls~n-~ 138 (328)
T 4fcg_A 78 ATQPGRVALELRSVPL-P---QFPDQA------------FRLSHLQHMTIDAAGLME-LPDTM-QQFAGLETLTLARN-P 138 (328)
T ss_dssp HTSTTCCEEEEESSCC-S---SCCSCG------------GGGTTCSEEEEESSCCCC-CCSCG-GGGTTCSEEEEESC-C
T ss_pred ccccceeEEEccCCCc-h---hcChhh------------hhCCCCCEEECCCCCccc-hhHHH-hccCCCCEEECCCC-c
Confidence 3457899999986543 1 222211 236899999999987662 11223 35789999999987 4
Q ss_pred CChHHHHHHHHhCCCCCEEecccccccccccccccc-----ccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceee
Q 008325 139 FTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISC-----FPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLR 213 (570)
Q Consensus 139 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 213 (570)
++ .+..-+..+++|++|++++|......+..+.. ....+++|+.|+++++ .+. .+......+++|+.|+
T Consensus 139 l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n--~l~--~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 139 LR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT--GIR--SLPASIANLQNLKSLK 212 (328)
T ss_dssp CC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--CCC--CCCGGGGGCTTCCEEE
T ss_pred cc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC--CcC--cchHhhcCCCCCCEEE
Confidence 44 22333457899999999998544333332221 1224678999999966 222 2222346678899999
Q ss_pred cCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecC
Q 008325 214 LNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLS 293 (570)
Q Consensus 214 l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~ 293 (570)
++++. +.+++..+..+++|+.|.+..+.... .+......+++|++|+++
T Consensus 213 L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~------------------------------~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 213 IRNSP-LSALGPAIHHLPKLEELDLRGCTALR------------------------------NYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp EESSC-CCCCCGGGGGCTTCCEEECTTCTTCC------------------------------BCCCCTTCCCCCCEEECT
T ss_pred ccCCC-CCcCchhhccCCCCCEEECcCCcchh------------------------------hhHHHhcCCCCCCEEECC
Confidence 98875 33333345566667766665432110 011123456778888888
Q ss_pred CCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecc
Q 008325 294 YAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVF 343 (570)
Q Consensus 294 ~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 343 (570)
+|..... .. ..+..+++|+.|++.+|.....+......+++|+.+.+.
T Consensus 262 ~n~~~~~-~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 262 DCSNLLT-LP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TCTTCCB-CC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCchhh-cc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 7762221 11 113567788888887764333333334467777777776
No 79
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.18 E-value=1.4e-14 Score=137.96 Aligned_cols=85 Identities=13% Similarity=0.000 Sum_probs=41.6
Q ss_pred HhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccc
Q 008325 421 VQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYE 499 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (570)
+..+++|+.|++++ .++...- . ...+++|++|++++|.++...... ...+++|++|++++|.++.... .. ..++
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip-~~-~~l~ 291 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLG-K-VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP-QG-GNLQ 291 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGG-G-CCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECC-CS-TTGG
T ss_pred HhcCCCCCEEECCCCceeeecC-c-ccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCC-CC-cccc
Confidence 34556666666665 3321110 0 223456666666666653221111 2445666666666665442211 11 4566
Q ss_pred cccEEEeeccc
Q 008325 500 TMRSLWMSSCE 510 (570)
Q Consensus 500 ~L~~L~l~~~~ 510 (570)
+|+.+++++|+
T Consensus 292 ~L~~l~l~~N~ 302 (313)
T 1ogq_A 292 RFDVSAYANNK 302 (313)
T ss_dssp GSCGGGTCSSS
T ss_pred ccChHHhcCCC
Confidence 66666666664
No 80
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=3.1e-10 Score=108.97 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=107.4
Q ss_pred HHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHH
Q 008325 303 LIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAAL 382 (570)
Q Consensus 303 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~ 382 (570)
+..++..+|+|++|.+.++... .+..+ ..++|++|++. ++.+++. ++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~--~~~~L~~L~L~-----~~~l~~~-------------------------~l 210 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK--PRPNLKSLEII-----SGGLPDS-------------------------VV 210 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC--BCTTCSEEEEE-----CSBCCHH-------------------------HH
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc--cCCCCcEEEEe-----cCCCChH-------------------------HH
Confidence 4455566677777777654211 11111 24566666666 3344444 44
Q ss_pred HHHHh-cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHH--hcCccCcEEecCC-cccHHHHHHHHh--cccccceeec
Q 008325 383 ITVAK-NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV--QSCKRLRRLSLSG-LLTDQVFLYIGM--YAEQLEMLSI 456 (570)
Q Consensus 383 ~~l~~-~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~L~~L~l~~-~i~~~~~~~l~~--~~~~L~~L~l 456 (570)
..+.. .+|+|+.|+|..... ..........+..++ ..+|+|+.|.+++ .+++.+...++. .+|+|++|+|
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~----~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVE----DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCG----GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred HHHHHccCCCCcEEEEecccc----ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 44432 689999998864210 000000011112222 3579999999977 777777666664 5789999999
Q ss_pred ccCCCChHHHHHHHhc---CccCceEEecCCCCChHHHHHHHhccccccEEEeeccc
Q 008325 457 AFAGNSDKGMLYVLNG---CKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCE 510 (570)
Q Consensus 457 ~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 510 (570)
+.|.+++.+...+..+ +++|+.|++++|.+++.++..+.+.+ ...+++++++
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9999999998887644 79999999999999998876554434 4567888776
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.15 E-value=5e-14 Score=134.04 Aligned_cols=211 Identities=11% Similarity=-0.006 Sum_probs=123.5
Q ss_pred hhCCCCCEEecCCCCCCChHHH-HHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNEL-IKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAI 360 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l 360 (570)
..+++|++|+++++. ++..+. ......+++|+.|+++++.-.. +......+++|++|+++ .+.++.......
T Consensus 49 ~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~ 121 (306)
T 2z66_A 49 DKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ-----HSNLKQMSEFSV 121 (306)
T ss_dssp TTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECT-----TSEEESSTTTTT
T ss_pred hccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECC-----CCcccccccchh
Confidence 456778888887766 553210 0112356778888877752111 00112346778888877 333333221111
Q ss_pred HccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHH
Q 008325 361 SAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQ 439 (570)
Q Consensus 361 ~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~ 439 (570)
...+++|+.|....+.++..... ....+++|+.|+++++. ++ +..+...+..+++|++|++++ .++..
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~------l~----~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNS------FQ----ENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCE------EG----GGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred hhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCc------cc----cccchhHHhhCcCCCEEECCCCCcCCc
Confidence 22356666662222233222111 12367889999887763 33 111222356778999999988 55443
Q ss_pred HHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcc-ccccEEEeecccCCh
Q 008325 440 VFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKY-ETMRSLWMSSCEVTL 513 (570)
Q Consensus 440 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~ 513 (570)
.... ...+++|+.|++++|.++......+ ..+++|+.|++++|.++.... ..+..+ ++|+.|++++|+++.
T Consensus 191 ~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 191 SPTA-FNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTT-TTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEEC
T ss_pred CHHH-hcCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeec
Confidence 2222 2357899999999999754332223 568999999999998876443 234556 489999999998753
No 82
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.15 E-value=2.8e-13 Score=128.94 Aligned_cols=84 Identities=18% Similarity=0.184 Sum_probs=40.6
Q ss_pred CCCCEEEeCCCccCH--HHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 101 VGLEELRLKRMVVSD--DCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
.++++|+++++.++. .....+. .+++|++|+++++..+....... +..+++|++|++++|.+....+..+. .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~----~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLS----Q 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGG----G
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHh----C
Confidence 456777777765543 2122233 45667777776322222111111 23566777777776655433222222 2
Q ss_pred CCcccEEEeccc
Q 008325 179 CTSLVSLNFSCL 190 (570)
Q Consensus 179 ~~~L~~L~l~~~ 190 (570)
+++|++|+++++
T Consensus 124 l~~L~~L~Ls~N 135 (313)
T 1ogq_A 124 IKTLVTLDFSYN 135 (313)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEeCCCC
Confidence 335555555533
No 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.06 E-value=1.4e-11 Score=123.99 Aligned_cols=222 Identities=14% Similarity=-0.004 Sum_probs=121.5
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
+++++|+|+++.++......+. .+++|++|+++++ .++...... +..+++|++|++++|.+.......+ ..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDNWLTVIPSGAF----EYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCSBCCTTTS----SSCT
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCCcCCccChhhh----cccC
Confidence 5788888888766543222333 5678888888876 343322112 2367888888888887664433322 3455
Q ss_pred cccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHH-HHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQ-KLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
+|+.|+++++ .+.. ........+++|+.|+++++..+..+. ..+..+++|+.|+++........ .+..
T Consensus 148 ~L~~L~L~~N--~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~ 216 (452)
T 3zyi_A 148 KLRELWLRNN--PIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--------NLTP 216 (452)
T ss_dssp TCCEEECCSC--CCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--------CCTT
T ss_pred CCCEEECCCC--Ccce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--------cccc
Confidence 8888888855 1210 001123456788888888765444332 23556777777777655432210 1233
Q ss_pred cCCccccc-CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCc
Q 008325 260 CKSIRSLS-GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQ 338 (570)
Q Consensus 260 ~~~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 338 (570)
+++|+.|. ....+... .......+++|+.|+++++. ++...... +..+++|+.|++.++.-..........+++|+
T Consensus 217 l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cccccEEECcCCcCccc-CcccccCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 44555554 22222221 11223456677777777765 54432222 25567777777776522111111223466777
Q ss_pred eeecc
Q 008325 339 ELRVF 343 (570)
Q Consensus 339 ~L~l~ 343 (570)
.|+++
T Consensus 294 ~L~L~ 298 (452)
T 3zyi_A 294 ELHLH 298 (452)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 77777
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.06 E-value=1.2e-11 Score=124.02 Aligned_cols=221 Identities=13% Similarity=0.017 Sum_probs=111.2
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++++.|+|+++.++......+. .+++|++|+++++ .++...... +..+++|++|++++|.+.......+ ..++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDNRLTTIPNGAF----VYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSSCCSSCCTTTS----CSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCCcCCeeCHhHh----hccc
Confidence 5677777777765543322233 5677777777766 343322112 2367778888887776654433222 3345
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCchhHH-HHHhhCCCceeecCcccccCCChHHHHHHHHHHh
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQ-KLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLV 258 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 258 (570)
+|+.|+++++. ..+.. .....+++|+.|+++++..+..+. ..+..+++|+.|++.......-. .+.
T Consensus 137 ~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~ 204 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPS----YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--------NLT 204 (440)
T ss_dssp SCCEEECCSCCCCEECT----TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--------CCT
T ss_pred cCceeeCCCCcccccCH----HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--------ccC
Confidence 77777777541 11111 123456777777777654443322 23555677777776554322110 022
Q ss_pred hcCCccccc-CCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCC
Q 008325 259 KCKSIRSLS-GFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKEL 337 (570)
Q Consensus 259 ~~~~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 337 (570)
.+++|+.|. ....+.... ...+..+++|++|+++++. ++...... +..+++|+.|++.++.-..........+++|
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp TCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred CCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 334444443 111222111 1123355667777776665 44332211 2455667777776652111111122345667
Q ss_pred ceeecc
Q 008325 338 QELRVF 343 (570)
Q Consensus 338 ~~L~l~ 343 (570)
+.|+++
T Consensus 282 ~~L~L~ 287 (440)
T 3zyj_A 282 ERIHLH 287 (440)
T ss_dssp CEEECC
T ss_pred CEEEcC
Confidence 777776
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.05 E-value=2e-11 Score=114.61 Aligned_cols=201 Identities=15% Similarity=0.026 Sum_probs=97.4
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccc-cccccccccccccCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIE-VDDNRGQWISCFPDSC 179 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~ 179 (570)
++|++|+++++.++......+. .+++|++|+++++ .++...... +..+++|++|++++|. +.......+. .+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~----~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFH----GL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTT----TC
T ss_pred CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhc----CC
Confidence 4566666666654432222222 4556666666655 233211111 1245666666666664 4433222222 33
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
++|+.|+++++. +... .......+++|++|+++++.-.......+..+++|+.|.+.....
T Consensus 105 ~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------- 165 (285)
T 1ozn_A 105 GRLHTLHLDRCG--LQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI---------------- 165 (285)
T ss_dssp TTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----------------
T ss_pred cCCCEEECCCCc--CCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc----------------
Confidence 466666666441 1100 011123455666666665531111112233344444444432110
Q ss_pred cCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCce
Q 008325 260 CKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQE 339 (570)
Q Consensus 260 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 339 (570)
..+. ......+++|++|+++++. ++...... +..+++|+.|++.++.-..........+++|+.
T Consensus 166 ----------~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 166 ----------SSVP----ERAFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp ----------CEEC----TTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ----------cccC----HHHhcCccccCEEECCCCc-ccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 0111 1123356788888888876 55432222 356788888888876322222233446788888
Q ss_pred eecc
Q 008325 340 LRVF 343 (570)
Q Consensus 340 L~l~ 343 (570)
|+++
T Consensus 230 L~l~ 233 (285)
T 1ozn_A 230 LRLN 233 (285)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8888
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.05 E-value=1.3e-10 Score=108.99 Aligned_cols=173 Identities=16% Similarity=0.094 Sum_probs=121.5
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHc
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISA 362 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~ 362 (570)
.+++|+.|+++++. +.+.. . +..+++|+.|+++++.-.... . ...+++|+.|+++ .+.+++..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~--~-~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~-----~n~l~~~~------ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLD-----ENKVKDLS------ 106 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECC-----SSCCCCGG------
T ss_pred hcCcccEEEccCCC-cccCh--h-HhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECC-----CCcCCCCh------
Confidence 45689999999886 55432 1 467899999999886222111 1 4578899999999 33443210
Q ss_pred cChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHH
Q 008325 363 GCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVF 441 (570)
Q Consensus 363 ~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~ 441 (570)
. ...+++|+.|+++++. ++.. ..+..+++|+.|++++ .+++-
T Consensus 107 ---------------------~-l~~l~~L~~L~L~~n~------i~~~-------~~l~~l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 107 ---------------------S-LKDLKKLKSLSLEHNG------ISDI-------NGLVHLPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp ---------------------G-GTTCTTCCEEECTTSC------CCCC-------GGGGGCTTCCEEECCSSCCCCC--
T ss_pred ---------------------h-hccCCCCCEEECCCCc------CCCC-------hhhcCCCCCCEEEccCCcCCcc--
Confidence 1 1267889999988773 4421 1255778999999988 55543
Q ss_pred HHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHH
Q 008325 442 LYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGC 516 (570)
Q Consensus 442 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 516 (570)
.....+++|+.|++++|.+++... ...+++|+.|++++|.+++.. .+..+++|+.|++++|+++..++
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCE
T ss_pred -hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCcc
Confidence 223457899999999999855432 467899999999999888743 36789999999999998765443
No 87
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.05 E-value=1e-11 Score=118.81 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccc
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVD 165 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 165 (570)
+++++|+++++.++.- ...+. .+++|++|+++++ .++ .+...+..+++|++|++++|.+.
T Consensus 81 ~~l~~L~L~~n~l~~l-p~~l~-~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 81 PGRVALELRSVPLPQF-PDQAF-RLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp TTCCEEEEESSCCSSC-CSCGG-GGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCC
T ss_pred cceeEEEccCCCchhc-Chhhh-hCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCccc
Confidence 5566666665544310 11122 2455555555544 222 11111134555555555555443
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.03 E-value=1.1e-12 Score=122.59 Aligned_cols=112 Identities=8% Similarity=0.069 Sum_probs=73.7
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccH---HHHHHHHhcccccc-eeecccCCCC
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTD---QVFLYIGMYAEQLE-MLSIAFAGNS 462 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~---~~~~~l~~~~~~L~-~L~l~~~~i~ 462 (570)
.+++|+.|+++++. ++. ..+...+..+++|++|++++ .++. ..+..+ ...+.|. .|++++|.++
T Consensus 122 ~l~~L~~L~l~~n~------l~~----~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 122 HLKTLKELNVAHNL------IQS----FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp TCTTCCEEECCSSC------CCC----CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCC
T ss_pred cCCCCCEEECcCCc------cce----ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCccc
Confidence 67899999998773 432 11122356788999999987 4443 223222 1223333 8899999875
Q ss_pred hHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 463 DKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 463 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
...... -...+|++|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 191 ~~~~~~--~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 191 FIQPGA--FKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECTTS--SCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCC
T ss_pred ccCccc--cCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccc
Confidence 432211 124589999999998775432 345789999999999998754
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.01 E-value=3.2e-10 Score=107.71 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=23.1
Q ss_pred ccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCCh
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSD 463 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~ 463 (570)
++|+.|++++ .++.-. ....+++|+.|++++|++++
T Consensus 272 ~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCSCC---CTTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCCCc---hhhhCCCccEEECcCCCCCC
Confidence 5777777776 444311 12456788888888887765
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.00 E-value=1e-11 Score=118.22 Aligned_cols=208 Identities=15% Similarity=0.130 Sum_probs=129.9
Q ss_pred hCCCceeecCcccccCCC-hHHHHHHHHHHhhcCCccccc-CCcccChh--hHHhHhh-hCCCCCEEecCCCCCCChHHH
Q 008325 229 RAPQLVDLGIGSFVYDPS-SEAYIKLKATLVKCKSIRSLS-GFLEVVPC--CLSAIHP-VCQNLTSLNLSYAPGIHGNEL 303 (570)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~-~~~~~~~~--~l~~~~~-~~~~L~~L~l~~~~~l~~~~l 303 (570)
.+++|++|.++....... .... .+..+++|+.|. ....+... .+..+.. ..++|++|+++++. +.....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPL-----LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCS-----SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred CcCCccEEEccCCcccchhHHHH-----HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence 689999999987654321 0000 024567788777 33333332 2222211 13899999999987 654332
Q ss_pred HHHHhcCCCCCEEEecccc-ch-hhHHHHH--hcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCCh
Q 008325 304 IKLIRFCRKLERLWILDSI-GD-RGLGVVA--FTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTN 379 (570)
Q Consensus 304 ~~l~~~~~~L~~L~l~~~~-~~-~~~~~~~--~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~ 379 (570)
.. +..+++|+.|+++++. .. .++.... ..+++|++|+++ .+.++..+
T Consensus 167 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~-----~N~l~~~~----------------------- 217 (312)
T 1wwl_A 167 EQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR-----NAGMETPS----------------------- 217 (312)
T ss_dssp TT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT-----TSCCCCHH-----------------------
T ss_pred HH-hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC-----CCcCcchH-----------------------
Confidence 22 3578999999999984 22 2222222 578999999999 44454211
Q ss_pred HHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhc-ccccceeecc
Q 008325 380 AALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMY-AEQLEMLSIA 457 (570)
Q Consensus 380 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~-~~~L~~L~l~ 457 (570)
.....+...+++|+.|+++++. ++... .......+++|++|++++ .++. +... .++|+.|+++
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~------l~~~~----~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~~L~~L~Ls 282 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNS------LRDAA----GAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLPAKLSVLDLS 282 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSC------CCSSC----CCSCCCCCTTCCEEECTTSCCSS-----CCSSCCSEEEEEECC
T ss_pred HHHHHHHhcCCCCCEEECCCCc------CCccc----chhhhhhcCCCCEEECCCCccCh-----hhhhccCCceEEECC
Confidence 1112333468999999998874 43211 001133568999999998 5551 1111 2699999999
Q ss_pred cCCCChHHHHHHHhcCccCceEEecCCCCChH
Q 008325 458 FAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNT 489 (570)
Q Consensus 458 ~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 489 (570)
+|.++.. .. ...+++|++|++++|++++.
T Consensus 283 ~N~l~~~--p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 283 YNRLDRN--PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SSCCCSC--CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCCCC--hh-HhhCCCCCEEeccCCCCCCC
Confidence 9998654 22 46789999999999988753
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.96 E-value=7.5e-10 Score=104.88 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=46.4
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++|++|+++++.+++- ..+. .+++|++|+++++. ++... . ...+++|++|++++|.+.... . ...++
T Consensus 41 ~~L~~L~l~~~~i~~l--~~~~-~l~~L~~L~L~~n~-i~~~~--~-~~~l~~L~~L~L~~n~l~~~~--~----~~~l~ 107 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI--EGVQ-YLNNLIGLELKDNQ-ITDLA--P-LKNLTKITELELSGNPLKNVS--A----IAGLQ 107 (308)
T ss_dssp HTCCEEECTTSCCCCC--TTGG-GCTTCCEEECCSSC-CCCCG--G-GTTCCSCCEEECCSCCCSCCG--G----GTTCT
T ss_pred CCcCEEEeeCCCccCc--hhhh-ccCCCCEEEccCCc-CCCCh--h-HccCCCCCEEEccCCcCCCch--h----hcCCC
Confidence 4566666665544331 1122 45566666666552 32211 1 235666666666666544321 1 22344
Q ss_pred cccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCC
Q 008325 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRA 217 (570)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 217 (570)
+|+.|+++++. +.. +.. ...+++|+.|+++++
T Consensus 108 ~L~~L~l~~n~--l~~--~~~-l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 108 SIKTLDLTSTQ--ITD--VTP-LAGLSNLQVLYLDLN 139 (308)
T ss_dssp TCCEEECTTSC--CCC--CGG-GTTCTTCCEEECCSS
T ss_pred CCCEEECCCCC--CCC--chh-hcCCCCCCEEECCCC
Confidence 66666666441 111 111 334556666666554
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=3.3e-10 Score=99.70 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=75.3
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCC-CChHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAG-NSDKG 465 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~ 465 (570)
.+++|+.|+++++ .++ +.... .+..+++|+.|++++ .+++.....+ ..+++|+.|++++|. +++..
T Consensus 86 ~l~~L~~L~l~~n------~l~----~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 86 GLSNLERLRIMGK------DVT----SDKIP-NLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp TCTTCCEEEEECT------TCB----GGGSC-CCTTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG
T ss_pred cCCCCCEEEeECC------ccC----cccCh-hhcCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH
Confidence 5677888887766 333 11111 134678888888887 6666555554 357899999999998 76542
Q ss_pred HHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 466 MLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 466 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
. ...+++|++|++++|.+++.. .+..+++|+.|++++|+|+.
T Consensus 154 --~-l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 --P-LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --G-GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred --h-hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 2 367899999999999888743 45789999999999998764
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.95 E-value=6.1e-10 Score=114.94 Aligned_cols=170 Identities=15% Similarity=0.103 Sum_probs=97.8
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHc
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISA 362 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~ 362 (570)
.+++|+.|+++++. +.... . +..+++|+.|+++++.-..... ...+++|+.|+|+ .+.++..
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls-----~N~l~~l------- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ--G-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD-----ENKIKDL------- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT--T-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC-----SSCCCCC-------
T ss_pred cCCCCCEEECcCCC-CCCCh--H-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc-----CCCCCCC-------
Confidence 45577777777765 44322 1 3567777777777652111111 3467778888887 3333321
Q ss_pred cChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHH
Q 008325 363 GCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVF 441 (570)
Q Consensus 363 ~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~ 441 (570)
+ . ...+++|+.|+|+++. ++..+ -+..+++|+.|+|++ .+++.
T Consensus 103 --~------------------~-l~~l~~L~~L~Ls~N~------l~~l~-------~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 103 --S------------------S-LKDLKKLKSLSLEHNG------ISDIN-------GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp --T------------------T-STTCTTCCEEECTTSC------CCCCG-------GGGGCTTCSEEECCSSCCCCC--
T ss_pred --h------------------h-hccCCCCCEEEecCCC------CCCCc-------cccCCCccCEEECCCCccCCc--
Confidence 0 0 1146677777776653 33110 144567777777766 44432
Q ss_pred HHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 442 LYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 442 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
.....+++|+.|+|++|.+++... ...+++|+.|+|++|.+++. ..+..+++|+.|+|++|+++.
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEEEEC
T ss_pred -hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCcCcC
Confidence 122346777777777777643221 35677777777777776653 235667777777777776544
No 94
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=1.9e-08 Score=86.96 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=103.1
Q ss_pred cchHHHHHHhhCCCCCEEEeCCC-ccCHHHHHHHHhh---CCCccEEEecCCCCCChHHHHHHH---HhCCCCCEEeccc
Q 008325 89 VYPWVEALAKSRVGLEELRLKRM-VVSDDCLELLSRS---FVNFKSLVLVSCEGFTTDGLAAIA---ANCRYLRELDLQE 161 (570)
Q Consensus 89 ~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~ 161 (570)
....+..+...+++|++|+|++| .+++.+...++.. .++|++|+|+++ .+++.+...+. ...++|++|++++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 44567777888999999999999 9999988877654 467999999988 68888766554 5678999999999
Q ss_pred cccccccccccccccCCCCcccEEEe--ccccCCCCHHHH---HHHHHhCCCCceeecCCCC
Q 008325 162 IEVDDNRGQWISCFPDSCTSLVSLNF--SCLKGEINLTAL---ERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~L~~L~l--~~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~ 218 (570)
|.+++.+...+.......++|++|++ +++ .+++.+. .......++|++|+++++.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N--~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQ--PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS--CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCC--CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99999988888877778889999999 655 6777664 4455567889999998775
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.89 E-value=5.6e-11 Score=110.50 Aligned_cols=181 Identities=15% Similarity=0.057 Sum_probs=115.2
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccC
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGC 364 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~ 364 (570)
+++++|+++++. ++..... .+..+++|+.|++.++.-..........+++|++|+++ .+.++...
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-----~n~l~~~~-------- 101 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-----DNKLQALP-------- 101 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC-----SSCCCCCC--------
T ss_pred CCCCEEECcCCC-CCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC-----CCcCCcCC--------
Confidence 478889888876 5433211 23567888888888762221111223467889999998 33333211
Q ss_pred hhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHH
Q 008325 365 PKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLY 443 (570)
Q Consensus 365 ~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~ 443 (570)
. .....+++|+.|+++++. ++..+ ...+..+++|++|++++ .++.... .
T Consensus 102 --------------~----~~~~~l~~L~~L~l~~n~------l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 151 (270)
T 2o6q_A 102 --------------I----GVFDQLVNLAELRLDRNQ------LKSLP-----PRVFDSLTKLTYLSLGYNELQSLPK-G 151 (270)
T ss_dssp --------------T----TTTTTCSSCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEECCSSCCCCCCT-T
T ss_pred --------------H----hHcccccCCCEEECCCCc------cCeeC-----HHHhCcCcCCCEEECCCCcCCccCH-h
Confidence 0 111257889999988774 33111 11245778999999987 4443211 1
Q ss_pred HHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 444 IGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 444 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
....+++|+.|++++|.++......+ ..+++|++|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred HccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCee
Confidence 12457899999999998754322222 567999999999998775332 24578999999999999753
No 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.87 E-value=1.6e-09 Score=71.60 Aligned_cols=37 Identities=30% Similarity=0.595 Sum_probs=34.5
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhc
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERL 39 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~ 39 (570)
+..||+|++.+||+||+ .+|+.++++|||+|+.++..
T Consensus 9 ~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred HHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCC
Confidence 67899999999999999 89999999999999999753
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.86 E-value=2.1e-10 Score=106.61 Aligned_cols=179 Identities=11% Similarity=0.111 Sum_probs=105.4
Q ss_pred hCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHc
Q 008325 283 VCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISA 362 (570)
Q Consensus 283 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~ 362 (570)
.+++|+.|+++++. +.... . +..+++|+.|++.++.-.. +. ....+++|++|+++ .+.++...
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~--~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~-----~n~l~~~~------ 101 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQ--G-IQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILT-----GNQLQSLP------ 101 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCT--T-GGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECT-----TSCCCCCC------
T ss_pred cccceeeeeeCCCC-ccccc--c-cccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECC-----CCccCccC------
Confidence 45688888888776 54322 1 3567888888888762211 11 23367788888888 33333211
Q ss_pred cChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHH
Q 008325 363 GCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVF 441 (570)
Q Consensus 363 ~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~ 441 (570)
. .....+++|+.|+++++. ++..+ ...+..+++|++|++++ .++...
T Consensus 102 ----------------~----~~~~~l~~L~~L~L~~n~------l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~- 149 (272)
T 3rfs_A 102 ----------------N----GVFDKLTNLKELVLVENQ------LQSLP-----DGVFDKLTNLTYLNLAHNQLQSLP- 149 (272)
T ss_dssp ----------------T----TTTTTCTTCCEEECTTSC------CCCCC-----TTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred ----------------h----hHhcCCcCCCEEECCCCc------CCccC-----HHHhccCCCCCEEECCCCccCccC-
Confidence 0 011256778888777663 22111 11245667788888876 433211
Q ss_pred HHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 442 LYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 442 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
......+++|+.|++++|.++..... ....+++|+.|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 150 ~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred HHHhccCccCCEEECCCCCcCccCHH-HhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc
Confidence 11123467888888888887532221 12557888888888887665332 34567888888888888653
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.85 E-value=1.6e-09 Score=100.60 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=102.1
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
+++|++|+++++.+++. ..+. .+++|++|+++++. ++. +.. ...+++|++|++++|.+.......+ ..+
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~-~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n~l~~~~~~~~----~~l 108 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQ-YLPNVRYLALGGNK-LHD--ISA-LKELTNLTYLILTGNQLQSLPNGVF----DKL 108 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGG-GCTTCCEEECTTSC-CCC--CGG-GTTCTTCCEEECTTSCCCCCCTTTT----TTC
T ss_pred ccceeeeeeCCCCcccc--cccc-cCCCCcEEECCCCC-CCC--chh-hcCCCCCCEEECCCCccCccChhHh----cCC
Confidence 36777777777755432 1233 56777777777663 332 112 2367778888887776654332222 234
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
++|+.|+++.+. +.. ........+++|+.|+++++. + +
T Consensus 109 ~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~-l-------------~------------------------- 146 (272)
T 3rfs_A 109 TNLKELVLVENQ--LQS-LPDGVFDKLTNLTYLNLAHNQ-L-------------Q------------------------- 146 (272)
T ss_dssp TTCCEEECTTSC--CCC-CCTTTTTTCTTCCEEECCSSC-C-------------C-------------------------
T ss_pred cCCCEEECCCCc--CCc-cCHHHhccCCCCCEEECCCCc-c-------------C-------------------------
Confidence 577777777541 110 000112345566666666553 0 0
Q ss_pred cCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCce
Q 008325 260 CKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQE 339 (570)
Q Consensus 260 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 339 (570)
.+. ......+++|++|+++++. +++... ..+..+++|+.|++.++.-..........+++|+.
T Consensus 147 -----------~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 147 -----------SLP----KGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp -----------CCC----TTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -----------ccC----HHHhccCccCCEEECCCCC-cCccCH-HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 000 1112345678888887775 553221 12356678888888775222211223346788999
Q ss_pred eecccCCCCCCCcCHHHHHHHHccChhhHHH
Q 008325 340 LRVFPSGVDNAAVTEEGLVAISAGCPKLHSL 370 (570)
Q Consensus 340 L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L 370 (570)
|+++ .+.+. ..|++|+.+
T Consensus 210 L~l~-----~N~~~--------~~~~~l~~l 227 (272)
T 3rfs_A 210 IWLH-----DNPWD--------CTCPGIRYL 227 (272)
T ss_dssp EECC-----SSCBC--------CCTTTTHHH
T ss_pred EEcc-----CCCcc--------ccCcHHHHH
Confidence 9998 33333 137778877
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.82 E-value=1.6e-09 Score=95.22 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=101.5
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 361 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~ 361 (570)
..+++|++|+++++. +++.. -+..+++|+.|++.++.. ..+. ....+++|++|+++ .+.+++....
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~-----~n~l~~~~~~--- 106 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLT---GIEYAHNIKDLTINNIHA-TNYN-PISGLSNLERLRIM-----GKDVTSDKIP--- 106 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCT---TGGGCTTCSEEEEESCCC-SCCG-GGTTCTTCCEEEEE-----CTTCBGGGSC---
T ss_pred hhcCCccEEeccCCC-ccChH---HHhcCCCCCEEEccCCCC-Ccch-hhhcCCCCCEEEeE-----CCccCcccCh---
Confidence 345689999999876 65422 146788999999988722 1122 23467899999999 4444432211
Q ss_pred ccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-c-ccHH
Q 008325 362 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-L-LTDQ 439 (570)
Q Consensus 362 ~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~-i~~~ 439 (570)
.+ ..+++|+.|+++++ .++ +... ..+..+++|++|++++ . +++-
T Consensus 107 ----------------------~l-~~l~~L~~L~Ls~n------~i~----~~~~-~~l~~l~~L~~L~L~~n~~i~~~ 152 (197)
T 4ezg_A 107 ----------------------NL-SGLTSLTLLDISHS------AHD----DSIL-TKINTLPKVNSIDLSYNGAITDI 152 (197)
T ss_dssp ----------------------CC-TTCTTCCEEECCSS------BCB----GGGH-HHHTTCSSCCEEECCSCTBCCCC
T ss_pred ----------------------hh-cCCCCCCEEEecCC------ccC----cHhH-HHHhhCCCCCEEEccCCCCcccc
Confidence 11 25788999988877 454 3333 3456788999999988 3 5553
Q ss_pred HHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCCh
Q 008325 440 VFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGN 488 (570)
Q Consensus 440 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 488 (570)
. ....+++|+.|++++|.+++.. ....+++|+.|++++|++++
T Consensus 153 ~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 M---PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp G---GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred H---hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 2 2356789999999999986632 23678999999999998764
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.80 E-value=1.6e-09 Score=90.40 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=87.5
Q ss_pred CCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHH
Q 008325 389 NSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGML 467 (570)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 467 (570)
.++|+.|+++++. ++ +..+...+..+++|+.|++++ .++.. .....+++|+.|++++|.++.. +.
T Consensus 16 ~~~l~~L~l~~n~------l~----~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSR------SN----EGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LE 81 (149)
T ss_dssp GGGCSEEECTTCB------CB----TTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-TH
T ss_pred CccCeEEEccCCc------CC----hhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HH
Confidence 4679999988774 33 112222346778999999988 55543 2234578999999999998553 34
Q ss_pred HHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHH--HHHHhhCCceE
Q 008325 468 YVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGC--QTLAKKMPRLN 527 (570)
Q Consensus 468 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~l~~~~p~~~ 527 (570)
.....+++|++|++++|.+++......+..+++|+.|++++|+++.... ......+|.++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 4556689999999999998886544567889999999999998765432 23445566554
No 101
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.70 E-value=7.6e-10 Score=103.22 Aligned_cols=52 Identities=17% Similarity=-0.001 Sum_probs=27.4
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecc
Q 008325 289 SLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVF 343 (570)
Q Consensus 289 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 343 (570)
+|+++++. ++...... ....+|+.|+++++.-..........+++|++|+++
T Consensus 181 ~L~ls~n~-l~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 181 SLDLSLNP-MNFIQPGA--FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp EEECCSSC-CCEECTTS--SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred eeecCCCc-ccccCccc--cCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 66666655 44322111 122467777777652211111223467888889888
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=1.1e-09 Score=91.46 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=80.5
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++. . ..+..+++|++|++++ .++.. +......+++|+.|++++|.+++...
T Consensus 40 ~l~~L~~L~l~~n~------l~~----~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~ 105 (149)
T 2je0_A 40 EFEELEFLSTINVG------LTS----I---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLST 105 (149)
T ss_dssp TCTTCCEEECTTSC------CCC----C---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHH
T ss_pred hcCCCcEEECcCCC------CCC----c---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHH
Confidence 67899999998774 442 1 2356788999999988 55543 34444568999999999999977544
Q ss_pred HHHHhcCccCceEEecCCCCChHHH--HHHHhccccccEEEeec
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTAL--LTDVGKYETMRSLWMSS 508 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 508 (570)
......+++|++|++++|.+++... ...+..+++|+.|++++
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 3444779999999999998776442 24678899999998864
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.68 E-value=2e-08 Score=94.17 Aligned_cols=101 Identities=21% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
+++|++|+++++.+.+. ..+ ..+++|++|+++++. ++... . ...+++|+.|++++|.+.+.. . ...+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~-~~l~~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~~n~l~~~~--~----l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGI-QYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLDENKVKDLS--S----LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTG-GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCGG--G----GTTC
T ss_pred cCcccEEEccCCCcccC--hhH-hcCCCCCEEEccCCc-cCCCc--c-cccCCCCCEEECCCCcCCCCh--h----hccC
Confidence 46677777777755432 122 256777777777663 33211 1 346777777777777655421 1 2344
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
++|+.|+++++. +.. + .....+++|+.|+++++.
T Consensus 112 ~~L~~L~L~~n~--i~~--~-~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 112 KKLKSLSLEHNG--ISD--I-NGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp TTCCEEECTTSC--CCC--C-GGGGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCc--CCC--C-hhhcCCCCCCEEEccCCc
Confidence 577777777541 211 1 113345667777776653
No 104
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.68 E-value=4e-10 Score=105.63 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=113.5
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecccc-chhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHcc
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSI-GDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAG 363 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~ 363 (570)
++++.|+++++. ++..... .+..+++|+.|++.++. ..... ...+++|+.|+++ .+.++.
T Consensus 31 ~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls-----~N~l~~--------- 91 (290)
T 1p9a_G 31 KDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLS-----HNQLQS--------- 91 (290)
T ss_dssp TTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECC-----SSCCSS---------
T ss_pred CCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECC-----CCcCCc---------
Confidence 578888888876 6543322 23567888888888762 11110 1367788888888 333331
Q ss_pred ChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHH
Q 008325 364 CPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFL 442 (570)
Q Consensus 364 ~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~ 442 (570)
.| .....+++|+.|+++++. ++..+ . ..+..+++|++|++++ .++... .
T Consensus 92 l~------------------~~~~~l~~L~~L~l~~N~------l~~l~-~----~~~~~l~~L~~L~L~~N~l~~~~-~ 141 (290)
T 1p9a_G 92 LP------------------LLGQTLPALTVLDVSFNR------LTSLP-L----GALRGLGELQELYLKGNELKTLP-P 141 (290)
T ss_dssp CC------------------CCTTTCTTCCEEECCSSC------CCCCC-S----STTTTCTTCCEEECTTSCCCCCC-T
T ss_pred Cc------------------hhhccCCCCCEEECCCCc------CcccC-H----HHHcCCCCCCEEECCCCCCCccC-h
Confidence 00 011367899999998874 33211 1 1245678999999988 444211 1
Q ss_pred HHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 443 YIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 443 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
.....+++|+.|++++|.++..... ....+++|+.|++++|.++... ..+...++|+.|++++|++.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTT-TTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBC
T ss_pred hhcccccCCCEEECCCCcCCccCHH-HhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCcc
Confidence 1224578999999999997532221 2256899999999999877432 33456779999999999764
No 105
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.67 E-value=1.8e-07 Score=80.03 Aligned_cols=125 Identities=10% Similarity=0.234 Sum_probs=98.0
Q ss_pred hHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHh---cCccCcEEecCC-cccHHHHHHHHhc---cccc
Q 008325 379 NAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQ---SCKRLRRLSLSG-LLTDQVFLYIGMY---AEQL 451 (570)
Q Consensus 379 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~L~~L~l~~-~i~~~~~~~l~~~---~~~L 451 (570)
++.+..+...-+.|++|+|+++. .++ +++...++. .-..|+.|+|++ .++|.+...++.. .++|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn-----~ig----d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMK-----RVS----KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCC-----SSC----HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHHHHhcCCCccEEECCCCC-----CCC----HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 34555666677889999987643 566 777766554 446799999998 8999998888743 5689
Q ss_pred ceeecccCCCChHHHHHHHhcC---ccCceEEecCC---CCChHH---HHHHHhccccccEEEeecccCC
Q 008325 452 EMLSIAFAGNSDKGMLYVLNGC---KKLRKLEIRDS---PFGNTA---LLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 452 ~~L~l~~~~i~~~~~~~l~~~~---~~L~~L~l~~~---~~~~~~---~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
++|+|++|.|++.|...++..+ +.|++|+|++| .+++.+ +.+.++.-+.|+.|+++.+.+.
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 9999999999999999988874 56999999876 567765 5566788889999999888653
No 106
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.67 E-value=6e-09 Score=96.70 Aligned_cols=176 Identities=15% Similarity=0.072 Sum_probs=88.5
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
+++++|+++++.++......+. .+++|++|+++++. ++... ...+..+++|++|++++|.+.......+ ..++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFH-RLTKLRLLYLNDNK-LQTLP-AGIFKELKNLETLWVTDNKLQALPIGVF----DQLV 109 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSS-SCTTCCEEECCSSC-CSCCC-TTTTSSCTTCCEEECCSSCCCCCCTTTT----TTCS
T ss_pred CCCCEEECcCCCCCeeCHHHhc-CCCCCCEEECCCCc-cCeeC-hhhhcCCCCCCEEECCCCcCCcCCHhHc----cccc
Confidence 4677777777755432221222 45667777776652 32111 1122356777777777776554332222 2344
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcccccCCChHHHHHHHHHHhh
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVK 259 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 259 (570)
+|+.|+++.+. ..+.. .....+++|++|+++++. + +
T Consensus 110 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~-l-------------~------------------------- 146 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGYNE-L-------------Q------------------------- 146 (270)
T ss_dssp SCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSC-C-------------C-------------------------
T ss_pred CCCEEECCCCccCeeCH----HHhCcCcCCCEEECCCCc-C-------------C-------------------------
Confidence 67777766441 11111 112334566666665542 0 0
Q ss_pred cCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCce
Q 008325 260 CKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQE 339 (570)
Q Consensus 260 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 339 (570)
.+. ......+++|++|+++++. ++..... .+..+++|+.|++.++.-..........+++|+.
T Consensus 147 -----------~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 147 -----------SLP----KGVFDKLTSLKELRLYNNQ-LKRVPEG-AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp -----------CCC----TTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -----------ccC----HhHccCCcccceeEecCCc-CcEeChh-HhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 000 1112345677777777765 4432211 1245677888887765221111112335788899
Q ss_pred eecc
Q 008325 340 LRVF 343 (570)
Q Consensus 340 L~l~ 343 (570)
|+++
T Consensus 210 L~l~ 213 (270)
T 2o6q_A 210 LQLQ 213 (270)
T ss_dssp EECC
T ss_pred EEec
Confidence 9988
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.67 E-value=1.8e-09 Score=92.29 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=64.0
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++.. ..+..+++|++|++++ .++.. +......+++|+.|++++|.+++...
T Consensus 47 ~l~~L~~L~l~~n~------l~~~-------~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 47 EFVNLEFLSLINVG------LISV-------SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp GGGGCCEEEEESSC------CCCC-------SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred hCCCCCEEeCcCCC------CCCh-------hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchh
Confidence 45666777766653 3211 1234566677777766 43332 22333446777777777777654322
Q ss_pred HHHHhcCccCceEEecCCCCChHHH--HHHHhccccccEEEeecccC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTAL--LTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i 511 (570)
......+++|+.|++++|.++.... ...+..+++|+.|++++|.+
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 1222557778888888876654331 23567778888888887754
No 108
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.64 E-value=1.8e-07 Score=80.05 Aligned_cols=110 Identities=9% Similarity=0.045 Sum_probs=89.9
Q ss_pred hhhHHHHHhcCccCcEEecCC--cccHHHHHHHHhc---ccccceeecccCCCChHHHHHHHhc---CccCceEEecCCC
Q 008325 414 DEGFGAIVQSCKRLRRLSLSG--LLTDQVFLYIGMY---AEQLEMLSIAFAGNSDKGMLYVLNG---CKKLRKLEIRDSP 485 (570)
Q Consensus 414 ~~~~~~~~~~~~~L~~L~l~~--~i~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~ 485 (570)
++.+..+...-+.|++|+|++ .|++++...++.. ...|+.|+|++|.++|.+..+++.. .+.|++|+|++|.
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 556777788889999999986 8999999888754 4689999999999999998877665 6889999999999
Q ss_pred CChHHHHHH---HhccccccEEEeecc---cCChhHHHHHHhhC
Q 008325 486 FGNTALLTD---VGKYETMRSLWMSSC---EVTLGGCQTLAKKM 523 (570)
Q Consensus 486 ~~~~~~~~~---~~~~~~L~~L~l~~~---~i~~~~~~~l~~~~ 523 (570)
+++.+...+ +..-+.|+.|+|++| .+.+.+.+.+.+.+
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL 153 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI 153 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH
Confidence 999986654 445568999999876 67888766655533
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=2.8e-09 Score=91.00 Aligned_cols=127 Identities=18% Similarity=0.147 Sum_probs=91.2
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
..++|+.|+++++. ++ +..+...+..+++|+.|++++ .++.. .....+++|+.|++++|.++.. +
T Consensus 22 ~~~~L~~L~l~~n~------l~----~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCK------SN----DGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-L 87 (168)
T ss_dssp CTTSCSEEECCSCB------CB----TTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-C
T ss_pred CcccCCEEECCCCC------CC----hhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-H
Confidence 34789999999874 33 112222246779999999988 55543 2234578999999999998553 3
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHH--HHHHhhCCceEE
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGC--QTLAKKMPRLNV 528 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~l~~~~p~~~~ 528 (570)
......+++|+.|++++|.+++......+..+++|+.|++++|+++.... ......+|.++.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 44556689999999999988874332456789999999999998865432 234566777663
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.62 E-value=7.8e-11 Score=107.38 Aligned_cols=57 Identities=5% Similarity=0.039 Sum_probs=31.9
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecccc-chhhHHHHHhcCCCCceeecc
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSI-GDRGLGVVAFTCKELQELRVF 343 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~ 343 (570)
++|++|+++++. ++..... .+..+++|+.|++.++. -...-......+++|++|+++
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp TTCCEEEEESCC-CSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred CcccEEEEeCCc-ceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence 367778777765 5433221 12456777777777662 111111122356777777777
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.58 E-value=2.8e-09 Score=97.76 Aligned_cols=90 Identities=10% Similarity=0.073 Sum_probs=55.0
Q ss_pred hcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhcccc
Q 008325 422 QSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYET 500 (570)
Q Consensus 422 ~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 500 (570)
..+++|++|++++ .++.-. ......+++|+.|++++|.++......+ ..+++|+.|++++|.++.... ..+..+++
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 180 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVPH-GAFDRLGK 180 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTT
T ss_pred cccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHc-CcCcCCCEEECCCCcCCccCH-HHHhCCCC
Confidence 3455666666655 332110 0111345678888888777643222122 557889999999987765332 24567889
Q ss_pred ccEEEeecccCChh
Q 008325 501 MRSLWMSSCEVTLG 514 (570)
Q Consensus 501 L~~L~l~~~~i~~~ 514 (570)
|+.|++++|+++..
T Consensus 181 L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 181 LQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSCCBCTT
T ss_pred CCEEEeeCCceeCC
Confidence 99999999987554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.56 E-value=5.3e-08 Score=100.51 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=53.8
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
+++|+.|+++++.+.+.. .+. .+++|+.|+|+++. ++... . +..+++|+.|++++|.+.... ....+
T Consensus 42 L~~L~~L~l~~n~i~~l~--~l~-~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~------~l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ--GIQ-YLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDENKIKDLS------SLKDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT--TGG-GCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCSSCCCCCT------TSTTC
T ss_pred CCCCCEEECcCCCCCCCh--HHc-cCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcCCCCCCCh------hhccC
Confidence 356677777666544321 222 56677777776653 32211 1 346777777777777654321 12344
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
++|+.|+++.+. +.. +. ....+++|+.|+++++.
T Consensus 109 ~~L~~L~Ls~N~--l~~--l~-~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 109 KKLKSLSLEHNG--ISD--IN-GLVHLPQLESLYLGNNK 142 (605)
T ss_dssp TTCCEEECTTSC--CCC--CG-GGGGCTTCSEEECCSSC
T ss_pred CCCCEEEecCCC--CCC--Cc-cccCCCccCEEECCCCc
Confidence 567777777541 111 11 13446677777776653
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.55 E-value=8.3e-09 Score=95.08 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=112.7
Q ss_pred CCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccc-cchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccC
Q 008325 286 NLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS-IGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGC 364 (570)
Q Consensus 286 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~ 364 (570)
+++.++++.+. +++.. -+..+++|+.|++.++ +..- . -...+++|++|+++ .+.+++..
T Consensus 20 ~l~~l~l~~~~-i~~~~---~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~-----~N~i~~~~-------- 79 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLV---SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLS-----HNQISDLS-------- 79 (263)
T ss_dssp HHHHHHHTCSC-TTSEE---CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECC-----SSCCCCCG--------
T ss_pred HHHHHHhcCCC-ccccc---chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECC-----CCccCCCh--------
Confidence 34444555544 44322 1245689999999986 2221 1 23467899999999 33443211
Q ss_pred hhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHH
Q 008325 365 PKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLY 443 (570)
Q Consensus 365 ~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~ 443 (570)
. ...+++|+.|+++++. ++..+. ... ++|+.|++++ .+++. ..
T Consensus 80 --------------~------l~~l~~L~~L~L~~N~------l~~l~~-------~~~-~~L~~L~L~~N~l~~~--~~ 123 (263)
T 1xeu_A 80 --------------P------LKDLTKLEELSVNRNR------LKNLNG-------IPS-ACLSRLFLDNNELRDT--DS 123 (263)
T ss_dssp --------------G------GTTCSSCCEEECCSSC------CSCCTT-------CCC-SSCCEEECCSSCCSBS--GG
T ss_pred --------------h------hccCCCCCEEECCCCc------cCCcCc-------ccc-CcccEEEccCCccCCC--hh
Confidence 1 2368899999998884 332111 112 7899999988 55542 22
Q ss_pred HHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChh
Q 008325 444 IGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLG 514 (570)
Q Consensus 444 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 514 (570)
...+++|+.|++++|.+++.. . ...+++|+.|++++|.+++. ..+..+++|+.|++++|+++..
T Consensus 124 -l~~l~~L~~L~Ls~N~i~~~~--~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 -LIHLKNLEILSIRNNKLKSIV--M-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GTTCTTCCEEECTTSCCCBCG--G-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred -hcCcccccEEECCCCcCCCCh--H-HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 346889999999999986642 2 36789999999999988876 4567899999999999987654
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=6.5e-09 Score=106.58 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=87.6
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
..|+.|+++++ .++..+ . +..+++|+.|++++ .++ .+......+++|+.|++++|.++. ++
T Consensus 441 ~~L~~L~Ls~n------~l~~lp------~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp- 502 (567)
T 1dce_A 441 ADVRVLHLAHK------DLTVLC------H-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VD- 502 (567)
T ss_dssp TTCSEEECTTS------CCSSCC------C-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-
T ss_pred cCceEEEecCC------CCCCCc------C-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-
Confidence 46999999887 344221 1 56778999999998 555 222223468899999999999865 33
Q ss_pred HHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChh--HHHHHHhhCCceEE
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLG--GCQTLAKKMPRLNV 528 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l~~~~p~~~~ 528 (570)
-...+++|+.|++++|.++.......+..+++|+.|+|++|+++.. .+..+...+|.+++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 3367999999999999887653124567899999999999987542 34556666777653
No 115
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.52 E-value=2.2e-08 Score=93.79 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=57.8
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++++.|+++++.++......+. .+++|++|+++++ .++.... . ..+++|++|++++|.+... ......++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~ 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRA-ELTKLQV--D-GTLPVLGTLDLSHNQLQSL-----PLLGQTLP 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTS-CCCEEEC--C-SCCTTCCEEECCSSCCSSC-----CCCTTTCT
T ss_pred CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCC-ccCcccC--C-CCCCcCCEEECCCCcCCcC-----chhhccCC
Confidence 5788888888766543322333 4677888888766 3432111 1 3677888888888766522 12234456
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCC
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRA 217 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~ 217 (570)
+|+.|+++++. ..+.. ..+..+++|+.|+++++
T Consensus 101 ~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGN 134 (290)
T ss_dssp TCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTS
T ss_pred CCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCC
Confidence 77777777541 11111 11234556666666654
No 116
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.47 E-value=4.7e-09 Score=95.46 Aligned_cols=197 Identities=9% Similarity=-0.030 Sum_probs=97.4
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccc-cccccccccccccccCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQE-IEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~~ 179 (570)
+++++|+++++.++......+. .+++|++|++.++..++..... .+..+++|++|++++ +.+.......+. .+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~----~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALK----EL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEE----CC
T ss_pred CcccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhC----CC
Confidence 4677777777755432222222 4677777777766323221111 123677788888876 555533322222 34
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCc---eeecCCCCCchhHH-HHHhhCCCce-eecCcccccCCChHHHHHHH
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLK---SLRLNRAVPLDTLQ-KLLMRAPQLV-DLGIGSFVYDPSSEAYIKLK 254 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~---~L~l~~~~~~~~l~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~ 254 (570)
++|+.|+++.+. +.. +.. ...+++|+ .|+++++..+..+. ..+..+++|+ .|.+....
T Consensus 105 ~~L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~------------ 167 (239)
T 2xwt_C 105 PLLKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG------------ 167 (239)
T ss_dssp TTCCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC------------
T ss_pred CCCCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC------------
Confidence 577888777541 111 111 23455666 77777663233221 2234455555 55443211
Q ss_pred HHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcC-CCCCEEEeccccchhhHHHHHhc
Q 008325 255 ATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFC-RKLERLWILDSIGDRGLGVVAFT 333 (570)
Q Consensus 255 ~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 333 (570)
+..+.. ..+.. ++|++|+++++..++..... .+..+ ++|+.|+++++.-.. +.. ..
T Consensus 168 --------------l~~i~~----~~~~~-~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~l~~-l~~--~~ 224 (239)
T 2xwt_C 168 --------------FTSVQG----YAFNG-TKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTSVTA-LPS--KG 224 (239)
T ss_dssp --------------CCEECT----TTTTT-CEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCCCCC-CCC--TT
T ss_pred --------------CcccCH----hhcCC-CCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCcccc-CCh--hH
Confidence 011111 11122 57777888777324432111 22455 777888777652111 000 14
Q ss_pred CCCCceeecc
Q 008325 334 CKELQELRVF 343 (570)
Q Consensus 334 ~~~L~~L~l~ 343 (570)
+++|+.|++.
T Consensus 225 ~~~L~~L~l~ 234 (239)
T 2xwt_C 225 LEHLKELIAR 234 (239)
T ss_dssp CTTCSEEECT
T ss_pred hccCceeecc
Confidence 5677777777
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=5e-08 Score=93.33 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=18.1
Q ss_pred hcCccCceEEecCCCCChHHHHHHHhccccccEEE
Q 008325 471 NGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLW 505 (570)
Q Consensus 471 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 505 (570)
.+|++|+.|+++++.++..+- ..+..|++|+.|.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCccCccch-hhhcCCcchhhhc
Confidence 456666666665554443321 2345566666654
No 118
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.42 E-value=4.4e-08 Score=89.69 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=28.8
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccc
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVD 165 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 165 (570)
+++++|+++++.++......+. .+++|++|+++++ .++.... ..+..+++|++|++++|.+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSCCC
T ss_pred CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCccc
Confidence 4566666666654432222222 3455666666554 2222111 11124556666666665544
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.40 E-value=1e-07 Score=87.71 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=104.4
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHH
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 361 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~ 361 (570)
..+++|++|+++++. +++.. -+..+++|+.|+++++.-..... ...+++|+.|+++ .+.++..
T Consensus 38 ~~l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~-----~N~l~~l------ 100 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQSLA---GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN-----RNRLKNL------ 100 (263)
T ss_dssp HHHTTCSEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC-----SSCCSCC------
T ss_pred hhcCcCcEEECcCCC-cccch---HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC-----CCccCCc------
Confidence 456799999999886 66533 24678999999999872211111 4578999999999 3444321
Q ss_pred ccChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHH
Q 008325 362 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQV 440 (570)
Q Consensus 362 ~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~ 440 (570)
+. +. . ++|+.|+++++ .++..+ -+..+++|+.|++++ .+++..
T Consensus 101 ---~~------------------~~-~-~~L~~L~L~~N------~l~~~~-------~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 101 ---NG------------------IP-S-ACLSRLFLDNN------ELRDTD-------SLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp ---TT------------------CC-C-SSCCEEECCSS------CCSBSG-------GGTTCTTCCEEECTTSCCCBCG
T ss_pred ---Cc------------------cc-c-CcccEEEccCC------ccCCCh-------hhcCcccccEEECCCCcCCCCh
Confidence 00 11 2 78999999887 454211 256789999999988 555532
Q ss_pred HHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChH
Q 008325 441 FLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNT 489 (570)
Q Consensus 441 ~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 489 (570)
....+++|+.|++++|.+++. .....+++|+.|++++|+++..
T Consensus 145 ---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 ---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 234578999999999998665 2236689999999999976654
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.34 E-value=1.3e-08 Score=103.87 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++..+ . .+++|+.|++++ .++. +..+ .++|+.|++++|.++....
T Consensus 138 ~l~~L~~L~Ls~N~------l~~lp-~--------~l~~L~~L~Ls~N~L~~--lp~l---~~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 138 LPALLEYINADNNQ------LTMLP-E--------LPTSLEVLSVRNNQLTF--LPEL---PESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CCTTCCEEECCSSC------CSCCC-C--------CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCCC
T ss_pred cCccccEEeCCCCc------cCcCC-C--------cCCCcCEEECCCCCCCC--cchh---hCCCCEEECcCCCCCchhh
Confidence 46789999888774 33211 1 467899999987 4443 1112 2789999999998752111
Q ss_pred -H-HHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHHh
Q 008325 467 -L-YVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAK 521 (570)
Q Consensus 467 -~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 521 (570)
. .+....+.|+.|++++|.++... ..+..+++|+.|+|++|+++......+..
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC--------CCEEEECCSSCCCCCC--GGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred HHHhhhcccccceEEecCCCcceecC--HHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 0 11122233499999999877532 33456999999999999987655544433
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.30 E-value=1.4e-07 Score=82.86 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=64.1
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++..+ .+..+++|+.|++++ .++. +......+++|+.|++++|.++...
T Consensus 46 ~l~~L~~L~ls~n~------l~~l~-------~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~- 109 (198)
T 1ds9_A 46 TLKACKHLALSTNN------IEKIS-------SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS- 109 (198)
T ss_dssp HTTTCSEEECSEEE------ESCCC-------CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH-
T ss_pred cCCCCCEEECCCCC------Ccccc-------ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC-
Confidence 56677777777663 32111 134456777777766 3331 2222233567777777777765422
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
.+ ..+++|+.|++++|.+++......+..+++|+.|++++|+++.
T Consensus 110 -~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 110 -GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred -cc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 22 4567777777777777664433456677777777777776543
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.27 E-value=5.1e-07 Score=79.17 Aligned_cols=109 Identities=16% Similarity=0.066 Sum_probs=70.1
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++.. +..+ .....+++|+.|++++ .++.- .. ...+++|+.|++++|.+++.+.
T Consensus 68 ~l~~L~~L~l~~n~l------~~l~------~~~~~~~~L~~L~L~~N~l~~l--~~-~~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 68 GMENLRILSLGRNLI------KKIE------NLDAVADTLEELWISYNQIASL--SG-IEKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp HHTTCCEEEEEEEEE------CSCS------SHHHHHHHCSEEEEEEEECCCH--HH-HHHHHHSSEEEESEEECCCHHH
T ss_pred cCCCCCEEECCCCCc------cccc------chhhcCCcCCEEECcCCcCCcC--Cc-cccCCCCCEEECCCCcCCchhH
Confidence 456677777776642 2111 1233346677777776 44442 22 2346789999999999876443
Q ss_pred HHHHhcCccCceEEecCCCCChHH---------HHHHHhccccccEEEeecccCCh
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTA---------LLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
......+++|++|++++|+++... ....+..+++|+.|+ ++.++.
T Consensus 133 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 233467899999999999765431 223578899999887 666654
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=5.5e-09 Score=107.11 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=75.6
Q ss_pred hcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHH
Q 008325 387 KNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKG 465 (570)
Q Consensus 387 ~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 465 (570)
..+++|+.|+++++. ++..+ ..+..+++|+.|+|++ .++. +. -...+++|+.|++++|.++...
T Consensus 460 ~~l~~L~~L~Ls~N~------l~~lp------~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 460 EQLLLVTHLDLSHNR------LRALP------PALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp GGGTTCCEEECCSSC------CCCCC------GGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred cccccCcEeecCccc------ccccc------hhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCC
Confidence 367899999999884 43221 1356789999999998 5554 22 2345889999999999985543
Q ss_pred HHHHHhcCccCceEEecCCCCChH--HHHHHHhccccccEEEe
Q 008325 466 MLYVLNGCKKLRKLEIRDSPFGNT--ALLTDVGKYETMRSLWM 506 (570)
Q Consensus 466 ~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l 506 (570)
.......+++|+.|++++|+++.. ....+...+|+|+.|++
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 122236789999999999977653 23345677999999874
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.22 E-value=1.4e-07 Score=81.06 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=28.7
Q ss_pred ccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 448 AEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
+++|+.|++++|.++.... .+...+++|++|++++|.+++......+..+++|+.|++++|++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred CCCCCEEECCCCcccccCc-chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 4455555555555432110 11133455555555555544322111334555555555555544
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=4.7e-08 Score=93.49 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=62.3
Q ss_pred hhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCc-eEEecCCCCChHHH
Q 008325 414 DEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLR-KLEIRDSPFGNTAL 491 (570)
Q Consensus 414 ~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~ 491 (570)
...+..+...|++|+.|++++ .++.-.-. ....|++|+.|.+.++ ++..+-.++ .+|++|+ .|.+.+ .++..+-
T Consensus 215 ~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~-aF~~~~~L~~l~l~~n-i~~I~~~aF-~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 215 NADFKLIRDYMPNLVSLDISKTNATTIPDF-TFAQKKYLLKIKLPHN-LKTIGQRVF-SNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp HHHHHHHHHHCTTCCEEECTTBCCCEECTT-TTTTCTTCCEEECCTT-CCEECTTTT-TTCTTCCEEEEECT-TCCEECT
T ss_pred HHHHHHHHHhcCCCeEEECCCCCcceecHh-hhhCCCCCCEEECCcc-cceehHHHh-hCChhccEEEEEcc-cceEEch
Confidence 555555566688888888876 33321111 1245778888888775 432222223 6799999 999988 4443221
Q ss_pred HHHHhccccccEEEeecccCChhH
Q 008325 492 LTDVGKYETMRSLWMSSCEVTLGG 515 (570)
Q Consensus 492 ~~~~~~~~~L~~L~l~~~~i~~~~ 515 (570)
..+..|++|+.|++++++++..+
T Consensus 291 -~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 291 -GAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp -TTTTTCTTEEEEEECSSCCCEEC
T ss_pred -hhhhCCccCCEEEeCCCccCccc
Confidence 24578999999999998775433
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.13 E-value=4.3e-07 Score=77.89 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=39.7
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++|++|++++|.++.. ..+. .+++|+.|+++++ .++... ..+...+++|+.|++++|.+.+... +. ....++
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~--~~-~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNNSLVELGD--LD-PLASLK 113 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSCCCCCGGG--GG-GGGGCT
T ss_pred CCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCC-cccccC-cchhhcCCCCCEEECCCCcCCcchh--hH-hhhcCC
Confidence 4667777766655542 1122 3456666666655 333211 1122356666666666665543221 00 112334
Q ss_pred cccEEEeccc
Q 008325 181 SLVSLNFSCL 190 (570)
Q Consensus 181 ~L~~L~l~~~ 190 (570)
+|+.|+++++
T Consensus 114 ~L~~L~l~~N 123 (176)
T 1a9n_A 114 SLTYLCILRN 123 (176)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEecCC
Confidence 5666666543
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.06 E-value=1.5e-06 Score=88.71 Aligned_cols=113 Identities=15% Similarity=0.152 Sum_probs=66.2
Q ss_pred CCCceeeeCCCCCcccCCCCCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCCh
Q 008325 62 PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTT 141 (570)
Q Consensus 62 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 141 (570)
.+++.|+++++.. . -+|... +++|++|++++|.++. +. ..+++|+.|+++++ .++.
T Consensus 59 ~~L~~L~Ls~n~L-~---~lp~~l--------------~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N-~l~~ 114 (571)
T 3cvr_A 59 NQFSELQLNRLNL-S---SLPDNL--------------PPQITVLEITQNALIS--LP---ELPASLEYLDACDN-RLST 114 (571)
T ss_dssp TTCSEEECCSSCC-S---CCCSCC--------------CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSC
T ss_pred CCccEEEeCCCCC-C---ccCHhH--------------cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCC-CCCC
Confidence 4788888875532 1 144321 2578888888876653 11 34677888888766 3433
Q ss_pred HHHHHHHHhCCCCCEEeccccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 142 DGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 142 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
+..+ ..+|++|++++|.+.... ..+++|+.|+++++. ++. +.. .+++|+.|+++++.
T Consensus 115 --ip~l---~~~L~~L~Ls~N~l~~lp--------~~l~~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 115 --LPEL---PASLKHLDVDNNQLTMLP--------ELPALLEYINADNNQ--LTM--LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp --CCCC---CTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC
T ss_pred --cchh---hcCCCEEECCCCcCCCCC--------CcCccccEEeCCCCc--cCc--CCC---cCCCcCEEECCCCC
Confidence 2221 127888888887665422 135678888887552 211 111 35678888877764
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.06 E-value=3.3e-08 Score=95.89 Aligned_cols=159 Identities=14% Similarity=0.005 Sum_probs=98.6
Q ss_pred CCCCEEEeccccchhhHHHHHh-cCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcC
Q 008325 311 RKLERLWILDSIGDRGLGVVAF-TCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNN 389 (570)
Q Consensus 311 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~ 389 (570)
+.++.|+++++.-......... .+++|+.|+++ .+.++... .. ....+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-----~N~i~~i~----------------------~~----~~~~l 87 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-----HNHLNFIS----------------------SE----AFVPV 87 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-----SSCCCEEC----------------------TT----TTTTC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECC-----CCcCCccC----------------------hh----hccCC
Confidence 4588999988622211111222 67889999998 34443211 00 11267
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
++|+.|+|+++. ++..+ ...+..+++|+.|+|++ .++..... ....+++|+.|+|++|.++......
T Consensus 88 ~~L~~L~Ls~N~------l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 88 PNLRYLDLSSNH------LHTLD-----EFLFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTCCEEECCSSC------CCEEC-----TTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCCEEECCCCc------CCcCC-----HHHhCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeCHHH
Confidence 889999998774 33111 12245778999999988 44432111 1245789999999999975422221
Q ss_pred H--HhcCccCceEEecCCCCChHHHHHHHhcccc--ccEEEeecccCCh
Q 008325 469 V--LNGCKKLRKLEIRDSPFGNTALLTDVGKYET--MRSLWMSSCEVTL 513 (570)
Q Consensus 469 l--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~i~~ 513 (570)
+ ...+++|+.|+|++|.++.... ..+..++. ++.|+|++|+++.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEEC
T ss_pred hcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccC
Confidence 1 1357899999999998776443 34566776 4889999998753
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.04 E-value=2.3e-06 Score=75.57 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=19.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccc
Q 008325 126 VNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVD 165 (570)
Q Consensus 126 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 165 (570)
++|++|+++++ .++... ...+..+++|++|++++|.+.
T Consensus 28 ~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCC
T ss_pred CCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCCccC
Confidence 45666666655 232111 111235566666666666544
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.01 E-value=4.1e-07 Score=81.19 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=78.0
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++... ...+..+++|++|+|++ .++.-. ......+++|+.|++++|.++....
T Consensus 54 ~l~~L~~L~Ls~N~------i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQ------ISELA-----PDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp TCTTCCEEECCSSC------CCEEC-----TTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCEEECCCCc------CCCcC-----HHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCCCCEeCH
Confidence 57889999998874 33110 12256778999999988 444211 1122457899999999999754332
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
..+ ..+++|+.|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 122 ~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAF-QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred HHc-CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence 223 568999999999998776432 24577999999999999864
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.00 E-value=7.9e-07 Score=79.90 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=54.3
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++|++|+++++.++......+. .+++|++|+++++. ++.... ..+..+++|+.|++++|.+.......+ ..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~----~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQ-LGALPV-GVFDSLTQLTVLDLGTNQLTVLPSAVF----DRLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT----TTCT
T ss_pred CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCC-CCCcCh-hhcccCCCcCEEECCCCcCCccChhHh----Ccch
Confidence 4555566555544332111122 34556666655542 221100 112245566666666655443322212 2334
Q ss_pred cccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhH-HHHHhhCCCceeecCcc
Q 008325 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTL-QKLLMRAPQLVDLGIGS 240 (570)
Q Consensus 181 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l~~ 240 (570)
+|+.|+++++ .+. .+......+++|+.|+++++. +..+ ...+..+++|+.|.+..
T Consensus 113 ~L~~L~Ls~N--~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 113 HLKELFMCCN--KLT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSS--CCC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred hhCeEeccCC--ccc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence 5666666543 111 111112345566666665543 2221 12334445555555443
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.97 E-value=5.4e-07 Score=80.40 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=78.3
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+++++. ++... ...+..+++|++|++++ .++.... .....+++|++|++++|.++....
T Consensus 55 ~l~~L~~L~L~~N~------i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 55 KLPQLRKINFSNNK------ITDIE-----EGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp GCTTCCEEECCSSC------CCEEC-----TTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCT
T ss_pred cCCCCCEEECCCCc------CCEEC-----HHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECH
Confidence 67899999998774 33111 11246778999999988 4433211 122457899999999999754322
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
..+ ..+++|+.|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 123 ~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 123 DSF-IGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSS-TTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEE
T ss_pred hHc-CCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCc
Confidence 222 468999999999998776422 34578999999999999864
No 133
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=2.1e-06 Score=76.91 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 38 (570)
++.||+||+.+||+||+ ++|++++++|||+|+.++.
T Consensus 5 l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp HHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred hHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999 9999999999999999975
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.93 E-value=1.7e-06 Score=76.45 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=48.9
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCC
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDS 178 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 178 (570)
.+++|++|+++++.++......+ ..+++|++|+++++ .++... ...+..+++|++|++++|.+.......+ ..
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~ 122 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLSTN-QLQSLP-NGVFDKLTQLKELALNTNQLQSLPDGVF----DK 122 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TT
T ss_pred ccccCcEEECCCCccCccChhhc-CCCCCcCEEECCCC-cCCccC-HhHhcCccCCCEEEcCCCcCcccCHhHh----cc
Confidence 44666666666665442211111 23456666666655 232111 0112355666666666665543322211 23
Q ss_pred CCcccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCC
Q 008325 179 CTSLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRA 217 (570)
Q Consensus 179 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~ 217 (570)
+++|+.|+++.+. ..+.. .....+++|+.|+++++
T Consensus 123 l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 123 LTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSC
T ss_pred CCcCCEEECCCCccceeCH----HHhccCCCccEEEecCC
Confidence 3466666666431 11111 11233456666666554
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.92 E-value=8.4e-07 Score=79.71 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=90.4
Q ss_pred ChhhHHHHHhcccCChHHHHHHHhcCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHH
Q 008325 364 CPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFL 442 (570)
Q Consensus 364 ~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~ 442 (570)
.++|+.|....+.++......+ ..+++|+.|+++++. ++..+ ...+..+++|+.|++++ .++.-. .
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~------l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~l~-~ 105 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQ------LGALP-----VGVFDSLTQLTVLDLGTNQLTVLP-S 105 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC------CCCCC-----TTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred CCCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCC------CCCcC-----hhhcccCCCcCEEECCCCcCCccC-h
Confidence 4678888444445554322222 367899999998874 33111 11246789999999988 444211 1
Q ss_pred HHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 443 YIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 443 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
.....+++|+.|++++|.++. +..-...+++|+.|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCT
T ss_pred hHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccC
Confidence 122457899999999999853 22223678999999999998775432 346789999999999998753
No 136
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.89 E-value=4.8e-06 Score=75.79 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHhhcCChhhhh-HHHHHhHHHHHHhh
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRN-AVSLVCKSWYKIER 38 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~-~~s~Vcr~W~~~~~ 38 (570)
+..||+|++..||.||| .++++ ++++|||+|+.++.
T Consensus 51 ~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 51 LAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp TTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHT
T ss_pred hhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhc
Confidence 67899999999999999 89999 99999999999965
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.88 E-value=6.5e-07 Score=77.97 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=75.9
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
++|+.|+++++. ++..+. ...+..+++|++|++++ .++..... ....+++|+.|++++|.++......
T Consensus 29 ~~l~~L~l~~n~------i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 29 LHTTELLLNDNE------LGRISS----DGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp TTCSEEECCSCC------CCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CCCCEEECCCCc------CCccCC----ccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHHH
Confidence 478999888774 332111 11246788999999988 54432111 1234789999999999985433222
Q ss_pred HHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
+ .++++|++|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 98 ~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 F-LGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp S-TTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred h-cCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence 2 567999999999998876422 34578899999999999875
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.88 E-value=9.5e-07 Score=78.78 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=82.1
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
+.++.|+++++. ++... ....+..+++|++|++++ .++...-. ....+++|+.|++++|.++......
T Consensus 32 ~~~~~L~L~~N~------l~~~~----~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 32 QYTAELRLNNNE------FTVLE----ATGIFKKLPQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp TTCSEEECCSSC------CCEEC----CCCCGGGCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred CCCCEEEcCCCc------CCccC----chhhhccCCCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhH
Confidence 457889888773 43211 111256789999999988 44432111 1245789999999999985433222
Q ss_pred HHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHHhhCCceE
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLN 527 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~ 527 (570)
+ .++++|++|++++|.++.... ..+..+++|+.|+|++|+++...-..+ ..++.++
T Consensus 101 ~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~ 156 (220)
T 2v70_A 101 F-KGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLS 156 (220)
T ss_dssp G-TTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCC
T ss_pred h-cCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCC
Confidence 3 678999999999998775422 245688999999999998765322222 3345554
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.87 E-value=5.8e-08 Score=93.71 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=33.2
Q ss_pred CCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHH-HHHhcCCCCceeecc
Q 008325 285 QNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLG-VVAFTCKELQELRVF 343 (570)
Q Consensus 285 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~ 343 (570)
+++++|+++++. ++...-. .+.++++|+.|+++++.....+. ....++++++++.+.
T Consensus 30 ~~l~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTCSEEEEESCC-CSEECTT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCCCEEEccCCc-CCCcCHH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 589999999876 6542211 23567889999998763211111 122345666664444
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.85 E-value=1.3e-06 Score=74.92 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=76.3
Q ss_pred CCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHH
Q 008325 389 NSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGML 467 (570)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 467 (570)
.++|+.|+++++. ++..+ ...+..+++|++|++++ .++... ......+++|+.|++++|.++.....
T Consensus 27 ~~~l~~L~l~~n~------l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 27 PSSATRLELESNK------LQSLP-----HGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp CTTCSEEECCSSC------CCCCC-----TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCcEEEeCCCc------ccEeC-----HHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHH
Confidence 3679999998774 33111 11245678999999987 444211 11124578999999999998533221
Q ss_pred HHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 468 YVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 468 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
....+++|+.|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 95 -~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 95 -VFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred -HhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 22568999999999998775332 345779999999999998754
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.84 E-value=2e-06 Score=74.82 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=76.2
Q ss_pred CCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHH
Q 008325 390 SNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLY 468 (570)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 468 (570)
++|+.|+++++. ++..+ ..+..+++|+.|++++ .++..... ....+++|+.|++++|.++......
T Consensus 31 ~~l~~L~L~~n~------i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQ------FTLVP------KELSNYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSC------CCSCC------GGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCCc------CchhH------HHhhcccCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHH
Confidence 578999988774 43221 1356788999999987 44432111 1245789999999999975433222
Q ss_pred HHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 469 VLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 469 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
+ .++++|+.|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 98 f-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 F-DGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp T-TTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred h-CCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCee
Confidence 3 568999999999998775332 24568999999999999864
No 142
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.82 E-value=3e-06 Score=75.49 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=25.7
Q ss_pred CCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccc
Q 008325 100 RVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDD 166 (570)
Q Consensus 100 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 166 (570)
+++|++|+|+++.++......+. .+++|++|+++++ .++... ...+..+++|+.|++++|.+..
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGN-KITELP-KSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCC-cCCccC-HhHccCCCCCCEEECCCCCCCE
Confidence 34555555555544322111122 3344555555544 222100 0111244555555555554443
No 143
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.77 E-value=2.4e-06 Score=82.72 Aligned_cols=116 Identities=16% Similarity=0.064 Sum_probs=78.6
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+|+++. ++..+ ...+..+++|++|+|++ .++.... .....+++|+.|++++|.++....
T Consensus 62 ~l~~L~~L~L~~N~------i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 62 RLTNLHSLLLSHNH------LNFIS-----SEAFVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp CCTTCCEEECCSSC------CCEEC-----TTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT
T ss_pred cccccCEEECCCCc------CCccC-----hhhccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEECH
Confidence 57899999998874 43211 11246789999999998 4443211 122457899999999999854322
Q ss_pred HHHHhcCccCceEEecCCCCChHHHH--HHHhccccccEEEeecccCChhHH
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALL--TDVGKYETMRSLWMSSCEVTLGGC 516 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~ 516 (570)
..+ ..+++|+.|+|++|.++..... .....+++|+.|+|++|+++....
T Consensus 130 ~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 130 NAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp TTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred HHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 223 5689999999999987763321 112578999999999998765443
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.75 E-value=4.4e-06 Score=88.49 Aligned_cols=108 Identities=16% Similarity=0.157 Sum_probs=70.9
Q ss_pred cCCCCceeeeeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHH
Q 008325 388 NNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGM 466 (570)
Q Consensus 388 ~~~~L~~L~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 466 (570)
.+++|+.|+|+++. +...+ . . +..+++|++|+|++ .++ .+..-...+++|+.|+|++|.++. +
T Consensus 222 ~l~~L~~L~Ls~n~------l~~l~-~-~----~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--l 285 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ------IFNIS-A-N----IFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTS--L 285 (727)
T ss_dssp CCCCCCEEECTTSC------CSCCC-G-G----GGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSS--C
T ss_pred cCCCCcEEECCCCC------CCCCC-h-h----hcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCc--c
Confidence 67788888887764 32111 1 1 22678888888887 444 121112457888888888888752 2
Q ss_pred HHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh
Q 008325 467 LYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL 513 (570)
Q Consensus 467 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 513 (570)
..-+..+++|++|+|++|.++... ..+..+++|+.|+|++|+++.
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLP--WEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCC--SSTTSCTTCCCEECTTSCCCS
T ss_pred ChhhcCCCCCCEEECCCCCCCccC--hhhhcCCCccEEeCCCCccCC
Confidence 222356788888888888776432 235778888888888887764
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=6.8e-05 Score=67.96 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHhcccccceeecccCCCCh-HHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCCh------h
Q 008325 442 LYIGMYAEQLEMLSIAFAGNSD-KGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTL------G 514 (570)
Q Consensus 442 ~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~------~ 514 (570)
..+...+|+|+.|+|++|.++. .++..+...+++|+.|+|++|.+++..-...+..+ +|+.|+|++|+++. .
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 3334557788888888888733 23444445678888888888877764211222233 78888888887753 2
Q ss_pred HHHHHHhhCCceE
Q 008325 515 GCQTLAKKMPRLN 527 (570)
Q Consensus 515 ~~~~l~~~~p~~~ 527 (570)
-...+...+|.++
T Consensus 242 y~~~il~~~P~L~ 254 (267)
T 3rw6_A 242 YISAIRERFPKLL 254 (267)
T ss_dssp HHHHHHHHCTTCC
T ss_pred HHHHHHHHCcccC
Confidence 2335666777754
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.54 E-value=9.4e-07 Score=85.20 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=31.6
Q ss_pred hCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccc
Q 008325 99 SRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDD 166 (570)
Q Consensus 99 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 166 (570)
.+++|++|+|++|.+....-......+++++++....+..++...- ..+..+++|+.|++++|.+..
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSS
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhcccccccccccccccc
Confidence 4567777777776542210000111344555544433333332111 112356777777777776543
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.38 E-value=2.6e-05 Score=66.69 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=57.5
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++|++|+++++.++......+ ..+++|++|+++++ .++.... ..+..+++|++|++++|.+.......+ ..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGVF----DKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT----TTCT
T ss_pred CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCCCccccCHHHh----hCCc
Confidence 567777777775543211112 24567777777765 3332111 112367778888887776654332222 2345
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
+|+.|+++.+. ..+.. .....+++|+.|+++++.
T Consensus 101 ~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCCcceEeCH----HHhcCCcccCEEEecCCC
Confidence 77777777441 11111 122345677777777664
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.37 E-value=2.5e-05 Score=66.26 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=58.8
Q ss_pred ccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccE
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRS 503 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 503 (570)
++|+.|++++ .++...- .....+++|+.|++++|.++..... ...++++|++|+|++|.++.... ..+..+++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAG-VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChh-hccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCE
Confidence 5788888877 4332111 1123467899999999987532221 22568999999999998765332 24578999999
Q ss_pred EEeecccCCh
Q 008325 504 LWMSSCEVTL 513 (570)
Q Consensus 504 L~l~~~~i~~ 513 (570)
|+|++|+++.
T Consensus 107 L~L~~N~~~c 116 (170)
T 3g39_A 107 IWLLNNPWDC 116 (170)
T ss_dssp EECCSSCBCT
T ss_pred EEeCCCCCCC
Confidence 9999998753
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.36 E-value=4.6e-05 Score=76.47 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=33.7
Q ss_pred CCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhc
Q 008325 2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERL 39 (570)
Q Consensus 2 i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~ 39 (570)
|+.||+|++.+||+||+ .++++++++|||+|++++..
T Consensus 15 ~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 15 ITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred hHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 45699999999999999 99999999999999998653
No 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.34 E-value=4.2e-05 Score=66.35 Aligned_cols=106 Identities=14% Similarity=0.002 Sum_probs=65.4
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 180 (570)
++|++|+++++.++.-. ..+ ..+++|+.|+++++ .++.... ..+..+++|++|++++|.+.......+. .++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~-~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~----~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KEL-SNYKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD----GLK 102 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGG-GGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT----TCT
T ss_pred CCCCEEECCCCcCchhH-HHh-hcccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC----CCC
Confidence 57888888888665321 222 35688888888876 3432211 1123678899999988877655433333 445
Q ss_pred cccEEEecccc-CCCCHHHHHHHHHhCCCCceeecCCCC
Q 008325 181 SLVSLNFSCLK-GEINLTALERLVARSPNLKSLRLNRAV 218 (570)
Q Consensus 181 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~ 218 (570)
+|+.|+++++. ..+.. .....+++|+.|++++++
T Consensus 103 ~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPE----GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSCCCBCCT----TTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCeeCh----hhhhcCccccEEEeCCCC
Confidence 88888888551 11111 123446788888888764
No 151
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.29 E-value=1.7e-05 Score=68.87 Aligned_cols=101 Identities=9% Similarity=0.001 Sum_probs=68.8
Q ss_pred ccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccE
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRS 503 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 503 (570)
++|+.|++++ .++..........+++|++|++++|.++......+ .++++|++|++++|.++.... ..+..+++|+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 3799999988 44432211123467899999999999854322223 568999999999998876442 23568999999
Q ss_pred EEeecccCChhHHHHHHhhCCceEE
Q 008325 504 LWMSSCEVTLGGCQTLAKKMPRLNV 528 (570)
Q Consensus 504 L~l~~~~i~~~~~~~l~~~~p~~~~ 528 (570)
|++++|+++......+ ..++.++.
T Consensus 107 L~L~~N~l~~~~~~~~-~~l~~L~~ 130 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSF-EHLNSLTS 130 (192)
T ss_dssp EECCSSCCCEECTTSS-TTCTTCCE
T ss_pred EECCCCcCCeeCHHHh-hcCCCCCE
Confidence 9999998864322222 34455553
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.29 E-value=3.3e-05 Score=65.77 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred ccCcEEecCC-cccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccE
Q 008325 425 KRLRRLSLSG-LLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRS 503 (570)
Q Consensus 425 ~~L~~L~l~~-~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 503 (570)
++|+.|++++ .++... ......+++|+.|++++|.++..... ...++++|+.|+|++|.++.... ..+..+++|+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChh-HhCCcchhhEEECCCCccceeCH-HHhccccCCCE
Confidence 6788888877 433211 11123478899999999987542211 22567999999999998775322 24678999999
Q ss_pred EEeecccCC
Q 008325 504 LWMSSCEVT 512 (570)
Q Consensus 504 L~l~~~~i~ 512 (570)
|+|++|+++
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999999875
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=0.00025 Score=64.18 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=31.3
Q ss_pred cccccceeecccCCCChH-HHHHHHhcCccCceEEecCCCCCh------HHHHHHHhccccccEEE
Q 008325 447 YAEQLEMLSIAFAGNSDK-GMLYVLNGCKKLRKLEIRDSPFGN------TALLTDVGKYETMRSLW 505 (570)
Q Consensus 447 ~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~ 505 (570)
.+++|+.|+|++|.+++. .+..+ ..+ +|++|++++|++.. .....++..+|+|+.|+
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 345555555555555332 22222 223 67777777777653 22334567777777765
No 154
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.21 E-value=0.00014 Score=72.41 Aligned_cols=37 Identities=22% Similarity=0.514 Sum_probs=34.5
Q ss_pred CCCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh
Q 008325 1 MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 1 ~i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 38 (570)
+++.||+|++.+||+||+ .+++.++++|||+|+.++.
T Consensus 18 ~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 18 FISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp TTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred hhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 478899999999999999 9999999999999999875
No 155
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.16 E-value=0.00014 Score=76.99 Aligned_cols=58 Identities=24% Similarity=0.177 Sum_probs=29.9
Q ss_pred hhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEeccccchhhHHHHHhcCCCCceeecc
Q 008325 282 PVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVF 343 (570)
Q Consensus 282 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 343 (570)
..+++|++|+|+++. ++. +..-+..+++|+.|++.++.-. .+......+++|+.|+|+
T Consensus 267 ~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 267 KNLSNLRVLDLSHNR-LTS--LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp GGGTTCCEEECTTSC-CSS--CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred hCCCCCCEEeCcCCc-CCc--cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 345566666666665 441 1122345566666666665211 111113356677777777
No 156
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.15 E-value=8.7e-05 Score=73.79 Aligned_cols=36 Identities=28% Similarity=0.760 Sum_probs=33.2
Q ss_pred CCCCcHH----HHHHHHhhcCChhhhhHHHHHhHHHHHHhh
Q 008325 2 MNYFPDE----VIEHVFDFVTSQKDRNAVSLVCKSWYKIER 38 (570)
Q Consensus 2 i~~LP~e----il~~If~~L~~~~~~~~~s~Vcr~W~~~~~ 38 (570)
|+.||+| |+.+||+||+ .+++.++++|||+|+.++.
T Consensus 11 ~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 11 ITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp HHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHH
T ss_pred HHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 4569999 9999999999 9999999999999999864
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.12 E-value=2.5e-06 Score=83.71 Aligned_cols=32 Identities=3% Similarity=0.136 Sum_probs=15.0
Q ss_pred hCCCCCEEEeCCC--ccCHHHHHHHHhhCCCccEEEec
Q 008325 99 SRVGLEELRLKRM--VVSDDCLELLSRSFVNFKSLVLV 134 (570)
Q Consensus 99 ~~~~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~l~ 134 (570)
.|.+|+++.+... .+.+..+ ..|.+|+++++.
T Consensus 69 ~c~~L~~i~lp~~i~~I~~~aF----~~c~~L~~i~lp 102 (394)
T 4fs7_A 69 GCRKVTEIKIPSTVREIGEFAF----ENCSKLEIINIP 102 (394)
T ss_dssp TCTTEEEEECCTTCCEECTTTT----TTCTTCCEECCC
T ss_pred CCCCceEEEeCCCccCcchhHh----hCCCCCcEEEeC
Confidence 4555666666432 2332211 245556665553
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.70 E-value=6.5e-05 Score=73.34 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=42.7
Q ss_pred HhcCccCcEEecCC-c--------ccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCChHHH
Q 008325 421 VQSCKRLRRLSLSG-L--------LTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTAL 491 (570)
Q Consensus 421 ~~~~~~L~~L~l~~-~--------i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 491 (570)
+..|++|+.+.+.+ . +.+.+ ...|++|+.+.+.+. ++..+-.++ .+|++|+.|.|.++ ++..+-
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~a----F~~c~~L~~l~l~~~-i~~I~~~aF-~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYC----LEGCPKLARFEIPES-IRILGQGLL-GGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTT----TTTCTTCCEECCCTT-CCEECTTTT-TTCCSCCEEEECTT-CCEECT
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHH----hhCCccCCeEEeCCc-eEEEhhhhh-cCCCCccEEEECcc-ccEEcH
Confidence 45666666666654 1 11111 134666777776632 322211122 55777777777655 222111
Q ss_pred HHHHhccccccEEEeecccC
Q 008325 492 LTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 492 ~~~~~~~~~L~~L~l~~~~i 511 (570)
..+..| +|+.|.+.++.+
T Consensus 340 -~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 340 -SAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp -TSSSSS-CCCEEEECCSSC
T ss_pred -HhCCCC-CCCEEEEcCCCC
Confidence 133566 788888877743
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.55 E-value=0.00027 Score=68.95 Aligned_cols=98 Identities=12% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCCEEEeCCC--ccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEeccccccccccccccccccCCC
Q 008325 102 GLEELRLKRM--VVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSC 179 (570)
Q Consensus 102 ~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 179 (570)
+|+++.+... .+.+..+. . .+|+++.+... +...+-.. +.+|++|+.+++..+.+...+...+. +
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~----~-~~L~~i~lp~~--l~~I~~~a-F~~c~~L~~l~l~~n~l~~I~~~aF~-----~ 202 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFF----N-STVQEIVFPST--LEQLKEDI-FYYCYNLKKADLSKTKITKLPASTFV-----Y 202 (401)
T ss_dssp CCSEEECCTTCCEECTTTTT----T-CCCCEEECCTT--CCEECSST-TTTCTTCCEEECTTSCCSEECTTTTT-----T
T ss_pred CccEEEeCCCccEECHHhcC----C-CCceEEEeCCC--ccEehHHH-hhCcccCCeeecCCCcceEechhhEe-----e
Confidence 5777777654 34443331 2 25777777642 22111111 23678888888877654443332222 3
Q ss_pred CcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCC
Q 008325 180 TSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNR 216 (570)
Q Consensus 180 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 216 (570)
.+|+.+.+......+... ....|++|+.+.+..
T Consensus 203 ~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 203 AGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT
T ss_pred cccCEEEeCCchheehhh----HhhCCCCCCEEecCC
Confidence 577777776332222222 224566777777754
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.51 E-value=2.9e-05 Score=76.05 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=21.2
Q ss_pred hCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccc
Q 008325 124 SFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEI 162 (570)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 162 (570)
.|.+|+++.+... ++..+-.++ .+|++|+++++..+
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF-~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAF-ENCSKLEIINIPDS 104 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTT-TTCTTCCEECCCTT
T ss_pred CCCCceEEEeCCC--ccCcchhHh-hCCCCCcEEEeCCC
Confidence 5678888888532 222111122 36888888888654
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.40 E-value=0.00083 Score=56.70 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=7.6
Q ss_pred CCCCEEEeCCCccC
Q 008325 101 VGLEELRLKRMVVS 114 (570)
Q Consensus 101 ~~L~~L~L~~~~~~ 114 (570)
++|++|+|+++.++
T Consensus 30 ~~l~~L~L~~N~i~ 43 (170)
T 3g39_A 30 TTTQVLYLYDNQIT 43 (170)
T ss_dssp TTCSEEECCSSCCC
T ss_pred CCCcEEEcCCCcCC
Confidence 45556666655443
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.36 E-value=0.00091 Score=56.68 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=15.6
Q ss_pred CCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCC
Q 008325 101 VGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSC 136 (570)
Q Consensus 101 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 136 (570)
++|++|+|+++.++......+. .+++|+.|+|+++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSN 67 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCC
Confidence 4566666666544332111111 3344555555544
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.97 E-value=0.00074 Score=64.70 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=16.5
Q ss_pred ccccceeecccCCCChHHHHHHHhcCccCceEEecCCCCC
Q 008325 448 AEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFG 487 (570)
Q Consensus 448 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 487 (570)
+++|+.|+|++|.++...-.. +.++++|+.|+|++|.++
T Consensus 55 l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCSSCCS
T ss_pred ccCCCEEECCCCccceeCHHH-hcCCcCCCEEeCCCCccc
Confidence 444555555555442211111 133455555555555443
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.99 E-value=0.0047 Score=59.04 Aligned_cols=63 Identities=22% Similarity=0.117 Sum_probs=45.2
Q ss_pred ccccceeeccc-CCCChHHHHHHHhcCccCceEEecCCCCChHHHHHHHhccccccEEEeecccCC
Q 008325 448 AEQLEMLSIAF-AGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVT 512 (570)
Q Consensus 448 ~~~L~~L~l~~-~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 512 (570)
+++|+.|+|++ |.++......+ .++++|+.|+|++|.++.... ..+..+++|+.|+|++|+++
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCS
T ss_pred CCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccc
Confidence 45677788875 66643222222 568999999999998876432 34578999999999999765
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.16 E-value=0.16 Score=49.21 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=41.9
Q ss_pred HhcCccCcEEecCCc---ccHHHHHHHHhcccccceeecccCC--CChHHHHHHHhcCccCceEEecCC--CCChHHHHH
Q 008325 421 VQSCKRLRRLSLSGL---LTDQVFLYIGMYAEQLEMLSIAFAG--NSDKGMLYVLNGCKKLRKLEIRDS--PFGNTALLT 493 (570)
Q Consensus 421 ~~~~~~L~~L~l~~~---i~~~~~~~l~~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~ 493 (570)
+..|++|+.+.+... |.+.+ ...|.+|+.+.+...- |.+. + ..+|.+|+.+.|..+ .+.+.
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~---a-F~~C~~L~~i~ip~sv~~I~~~---- 351 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDD---A-FAGCEQLERIAIPSSVTKIPES---- 351 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTT---T-TTTCTTCCEEEECTTCCBCCGG----
T ss_pred cccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHh---H-hhCCCCCCEEEECcccCEEhHh----
Confidence 445666777766542 22221 1346667777765431 2221 1 255777777777554 23332
Q ss_pred HHhccccccEEEeecc
Q 008325 494 DVGKYETMRSLWMSSC 509 (570)
Q Consensus 494 ~~~~~~~L~~L~l~~~ 509 (570)
.+.+|++|+.+.+.++
T Consensus 352 aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGS 367 (394)
T ss_dssp GGTTCTTCCEEEESSC
T ss_pred HhhCCCCCCEEEECCc
Confidence 3456777777777665
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=73.85 E-value=1.1 Score=35.21 Aligned_cols=36 Identities=6% Similarity=0.051 Sum_probs=20.2
Q ss_pred cCceEEecCCCCChHHHHHHHhccccccEEEeecccC
Q 008325 475 KLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEV 511 (570)
Q Consensus 475 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 511 (570)
+|+.|+|++|.++...- ..+..+++|+.|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCe
Confidence 46666666665443221 2345566666666666654
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=73.77 E-value=2 Score=41.41 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=6.0
Q ss_pred HhhCCCceeecC
Q 008325 227 LMRAPQLVDLGI 238 (570)
Q Consensus 227 ~~~~~~L~~L~l 238 (570)
+..|.+|+.+.+
T Consensus 353 F~~C~~L~~i~~ 364 (394)
T 4gt6_A 353 FSNCTALNNIEY 364 (394)
T ss_dssp GTTCTTCCEEEE
T ss_pred hhCCCCCCEEEE
Confidence 444555555544
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=73.52 E-value=0.31 Score=46.83 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=49.4
Q ss_pred HhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccCceEEecCC--CCChHHHHHHHhcc
Q 008325 421 VQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDS--PFGNTALLTDVGKY 498 (570)
Q Consensus 421 ~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~ 498 (570)
+..|.+|+.+.+...+..-+-. ....|++|+.+.+.++.++..+-.++ .+|.+|+.+.|..+ .+.+. .+..|
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~-aF~~c~~L~~i~l~~~~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~----aF~~C 332 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYL-LCSGCSNLTKVVMDNSAIETLEPRVF-MDCVKLSSVTLPTALKTIQVY----AFKNC 332 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTT-TTTTCTTCCEEEECCTTCCEECTTTT-TTCTTCCEEECCTTCCEECTT----TTTTC
T ss_pred cceeehhccccccccceecccc-ccccccccccccccccccceehhhhh-cCCCCCCEEEcCccccEEHHH----HhhCC
Confidence 4567778888876522211111 12457788888887766532222222 56888888888654 23332 34678
Q ss_pred ccccEEEeecc
Q 008325 499 ETMRSLWMSSC 509 (570)
Q Consensus 499 ~~L~~L~l~~~ 509 (570)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 88888887554
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=61.71 E-value=2.5 Score=33.08 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=20.1
Q ss_pred ccceeecccCCCChHHHHHHHhcCccCceEEecCCCC
Q 008325 450 QLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPF 486 (570)
Q Consensus 450 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 486 (570)
+|+.|+|++|.|+...-.. ...+++|+.|+|++|+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~-f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGL-LDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTT-GGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhh-hhhccccCEEEecCCCe
Confidence 5666666666653221111 24456777777777743
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=50.06 E-value=5.7 Score=37.77 Aligned_cols=122 Identities=14% Similarity=0.195 Sum_probs=56.4
Q ss_pred hCCCCCEEEeCCC--ccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecccccccccccccccccc
Q 008325 99 SRVGLEELRLKRM--VVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFP 176 (570)
Q Consensus 99 ~~~~L~~L~L~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 176 (570)
.+.+++.+.+... .+.+.. ...+.+|+++.+... ++..+-. ....|.+|+.+.+... +...+. ...
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~~-i~~i~~----~aF 282 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYAK-VKTVPY----LLC 282 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECCC-CSEECT----TTT
T ss_pred cccccceeeeccceeEEcccc----ccCCccceEEEcCCC--ccEeCcc-ccceeehhcccccccc-ceeccc----ccc
Confidence 4466777766543 232221 124566777776432 2111111 1135667777766543 111110 123
Q ss_pred CCCCcccEEEeccc-cCCCCHHHHHHHHHhCCCCceeecCCCCCchhH-HHHHhhCCCceeecC
Q 008325 177 DSCTSLVSLNFSCL-KGEINLTALERLVARSPNLKSLRLNRAVPLDTL-QKLLMRAPQLVDLGI 238 (570)
Q Consensus 177 ~~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l-~~~~~~~~~L~~L~l 238 (570)
..|.+|+.+.+... ...+... ....|.+|+.+.+.... ..+ ...+..|.+|+.+.+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTAL--KTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccceehhh----hhcCCCCCCEEEcCccc--cEEHHHHhhCCCCCCEEEE
Confidence 45567777776532 1112221 22446677777765331 111 123455666766665
Done!