BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008326
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2
Length = 578
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 304/606 (50%), Positives = 385/606 (63%), Gaps = 86/606 (14%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
MTED+ + +T+ +S+TRQR+KRKWD+PAE L+ + G++ P + P+
Sbjct: 1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55
Query: 60 VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
+ P+ + P+ +VP V PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56 MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103
Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVK---TAERILAV 176
+LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A ++ T ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163
Query: 177 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 233
D AAAM+EEM+KQ G LQTV + +ST V+LGF+AD S N+AARIRGPND
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPND 218
Query: 234 QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293
QYINHIMNETGATV+LRGRGSG+ E G+E PLHL LS +NPKS+++AKRLAENL+D
Sbjct: 219 QYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMD 278
Query: 294 TISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAP 353
TIS E GASRVSS KVY AVPPPQQL++G G E + N S L +++ +++ P A
Sbjct: 279 TISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYAV 337
Query: 354 S---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPL 410
S V T++Y Q ++QS GI N G QPV+ GGTSYSGY GIYPQATPL
Sbjct: 338 SSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSGYAGIYPQATPL 388
Query: 411 QQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGP 470
QQVA L+QS SP+ S V PT +++T+ + + A +E E+RPP+KRKFQELP K P
Sbjct: 389 QQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNASNEMERRPPRKRKFQELPADCKVP 447
Query: 471 AKHNQGSEIPNRSEL--SANLDVRNV--------------------SNMPPPSKLVQPVD 508
K Q SE+ ++ SAN VR+ M PPS
Sbjct: 448 EKDKQQSELAMTGDVTPSAN-RVRSPPSPRSVMPPPPPKTIAPPPSKTMSPPS------S 500
Query: 509 NGMPHPPPRN--MPP-------PPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLV 559
M PPPR+ M P PPPP+FTL ++L D + S+ K V DTL+
Sbjct: 501 KSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQDNHISVKKPNP-----VPDTLI 555
Query: 560 KLMEYG 565
KLMEYG
Sbjct: 556 KLMEYG 561
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1
Length = 616
Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust.
Identities = 262/533 (49%), Positives = 325/533 (60%), Gaps = 40/533 (7%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLI----------NFPLASFGIS 50
MTED H + + +A Q+ +RKKRKWDQPAE L+ P+ +FG +
Sbjct: 1 MTEDRAHKVADEPAA----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFG-A 55
Query: 51 LPGVPVAPVVPAPAAAAFFTNPPVASGA--TVPPVVLQ--GPLPPKFNQPKVQDELIIAR 106
LPGV V P V A AA + PV + P VLQ K +Q K+ DE +IAR
Sbjct: 56 LPGV-VLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAR 113
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAH 166
EIVIND++ SVRYKLTKR TQEEIQKCT V+ITRGKY PN PDGEKPLYLHISAG+
Sbjct: 114 EIVINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQ 173
Query: 167 VK-TAERILAVDHAAAMVEEMLKQGHAGFPT---LQTVMGNGVQAMSTSVFLGFDADASL 222
+K TAERI AVD AA+M+EE+LKQG + G V+ S SVFLGFDAD SL
Sbjct: 174 LKDTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSL 233
Query: 223 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE 282
NI ARIRGPNDQYINHIM ETG TV+LRG+ S N E QPLHL+L+S + K+LE
Sbjct: 234 NITARIRGPNDQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLE 293
Query: 283 EAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLN--AGSAVIL 340
AK LAENLLDT++AE GASR+SS KVY AVPPPQQLL G+ G + ++ G V+
Sbjct: 294 AAKVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSGTKSDVHYIVGPNVLS 353
Query: 341 TSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGY 400
+T + +S + + V + + +QSG S P + + YP P + GG YSGY
Sbjct: 354 GATHSFASTGV------IAPVVAPAVTVQSGAPTYSGVPLPSNMAYPIPPANGGAFYSGY 407
Query: 401 EGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKF 460
IYPQATPLQQ+A L+ +SS T V P S ++ T S +E +KR +RKF
Sbjct: 408 GDIYPQATPLQQLAFTLKHASSSATQAV-PVTSTPTSMATKGNSILDAEMDKR--SRRKF 464
Query: 461 QELPVGSKGPAKHNQGSEIPNRSELSANLD--VRNVSNMPPPSKLVQPVDNGM 511
QELPV SKGPA +Q S+ ++ + LD S+ P K V P NGM
Sbjct: 465 QELPV-SKGPATESQNSQQGSKF-VKTGLDSSGNIGSSSIAPPKKVHPGSNGM 515
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1
Length = 585
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 40/234 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQG--------------------HAG 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 161 DRPLYLHVQG----QTRE---LVDRAVNRIKEIITSGVVKAATGSSPTFNGATVTVYHQP 213
Query: 194 FPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETG 244
P V +G+ + +F+G + A A+ N+ ++ GP Y+ HI ETG
Sbjct: 214 APVTPVVSAAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQMETG 273
Query: 245 ATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
A V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 274 AKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 327
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1
Length = 570
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 117/237 (49%), Gaps = 48/237 (20%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYR--------LPN 148
K++D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ LP+
Sbjct: 74 KLKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRVSGAAVSTRGRFMTVEEKSKALPS 132
Query: 149 APPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMG------ 202
++PLYLH V+ R L VD A ++E++ G T T G
Sbjct: 133 -----DRPLYLH------VQGQTRDL-VDKAVNRIKEIITNGVVKAATNSTYSGATVTVY 180
Query: 203 --------------------NGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMN 241
G+ + VF+G D A N+ R+ GP+ ++ HI
Sbjct: 181 QQSGPSVPTIPSAPHKPHYPGGMHYVQDKVFVGLDQALQGFNVKERVEGPSCSFLQHIQA 240
Query: 242 ETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
ETGA V LRG+GSG E G E +P+++++S P+ L AK L ENLL T+ AE
Sbjct: 241 ETGAKVFLRGKGSGCLEPASGREAFEPMYIYISHPKPEGLASAKTLCENLLQTVHAE 297
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 612
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 37/231 (16%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y G
Sbjct: 102 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAKIGPG 160
Query: 154 EKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQG-----HAGFPTLQTV-------- 200
++PLYLH+ +T E VD A ++E++ G PT
Sbjct: 161 DRPLYLHVQG----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQP 213
Query: 201 ------------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATV 247
+G+ + +F+G + A A+ N+ ++ GP Y+ HI ETGA V
Sbjct: 214 APVAPVAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQLETGAKV 273
Query: 248 LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ +E
Sbjct: 274 FLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHSE 324
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9
PE=2 SV=1
Length = 619
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 40/234 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 107 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTAEEKAKVGPG 165
Query: 154 EKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQG--------------------HAG 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 166 DRPLYLHVQG----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVTVYHQP 218
Query: 194 FPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETG 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ETG
Sbjct: 219 APITQMSPAVGQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETG 278
Query: 245 ATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
A V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 279 AKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 332
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1
Length = 612
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 148/319 (46%), Gaps = 56/319 (17%)
Query: 28 KKRKWDQPAES-LINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVL- 85
++ KWDQPA + L+ P + G + G +P AAA A+ A +L
Sbjct: 14 RRSKWDQPAPAPLLFLPPTAPGGEVAGSGASPGGATTAAAPSGALDAAAAVAAKINAMLM 73
Query: 86 -QGPLPP------KFNQP-------KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQ 131
+G L P K P K +D+L++A E+ IND + R LT+ TQ+EI
Sbjct: 74 AKGKLKPSQNAAEKLQAPGKSLTSNKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEIS 132
Query: 132 KCTGAVVITRGKYRLPNAPPD---GEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLK 188
+ +GA V TRG++ G++PLYLH+ +T E VD A ++E++
Sbjct: 133 RLSGAAVSTRGRFMTTEEKAKVGPGDRPLYLHVQG----QTRE---LVDRAVNRIKEIIT 185
Query: 189 QG--------------------HAGFPTLQTV--------MGNGVQAMSTSVFLGFD-AD 219
G H P Q +G+ + +F+G + A
Sbjct: 186 NGVVKAATGTSPTFNGATVTVYHQPAPIAQLSPAINQKPSFQSGMHYVQDKLFVGLEHAV 245
Query: 220 ASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPK 279
+ N+ ++ GP Y+ HI ETGA V LRG+GSG E G E +P+++++S P+
Sbjct: 246 PTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPE 305
Query: 280 SLEEAKRLAENLLDTISAE 298
L AK+L ENLL T+ AE
Sbjct: 306 GLAAAKKLCENLLQTVHAE 324
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1
Length = 614
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 40/234 (17%)
Query: 97 KVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD---G 153
K +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ G
Sbjct: 97 KSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPG 155
Query: 154 EKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQG--------------------HAG 193
++PLYLH+ +T E VD A ++E++ G H
Sbjct: 156 DRPLYLHVQG----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQP 208
Query: 194 FPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETG 244
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI ETG
Sbjct: 209 APIAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETG 268
Query: 245 ATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 298
A V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 269 AKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 322
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1
Length = 534
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 57/308 (18%)
Query: 98 VQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEK 155
++ + + +++ IN+ + RY L + T EI+ +G + ++G+Y PN D +
Sbjct: 160 IEGDGVFMQDVEINNVRN--RYILVRASTLSEIENKSGVQLFSKGRY-YPNKALATDKDP 216
Query: 156 PLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQ-------------------GHAGFPT 196
PLYLHI V + L V A +E + + ++ P
Sbjct: 217 PLYLHI-----VSHNRKDLTV--ALQEIESWINKDMGPLIDERRFRRREDNERNNSNSPR 269
Query: 197 LQTVMGNG--------VQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVL 248
+ GNG + + V++ ++ I GP Y+ HI ET V
Sbjct: 270 NFSTHGNGNGENGQPRRKWLEEKVYINLTPSRGFHLRQAIVGPQGAYVKHIQQETRTRVQ 329
Query: 249 LRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRV---- 304
++G+GS E E +P+HL + S++P +++ AK L E+L+ ++ + A +
Sbjct: 330 IKGQGSAFIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKD 389
Query: 305 ----SSCKVYNAVPPPQQLLTGIQGFGNE--QKLNAGSAVILTSTVNLSSVPLAPSV--- 355
+ YN PP + + E Q NA A ++T ++ + S+P P +
Sbjct: 390 RDQNQGNRAYN--PPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAM 447
Query: 356 ---PGVTT 360
PGVT+
Sbjct: 448 AMPPGVTS 455
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 217 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGLQG----EEVHQP 268
D+ + N RI GP + + TG V +RG+GS G + L+G E + P
Sbjct: 143 DSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDP 202
Query: 269 LHLFLSSNNPKSLEEAK-RLAENLLDTI 295
LH+ + + P S+ +A+ R A+ +++ +
Sbjct: 203 LHILIEAEFPASIIDARLRHAQEVIEEL 230
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 53 GVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELI---IAREIV 109
G V P++P A+ N A LQ + N ++Q + E+
Sbjct: 903 GTSVGPLLPLAIASNTQNNEATAR-------ALQAAFNIQQNLARIQAHAVPEHYEAELE 955
Query: 110 INDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDG--EKPLYLHISA 163
IND + R+K+T + T IQ+ TGA + TRG + P G E+ LYL I
Sbjct: 956 INDFPQNARWKITHKETLGPIQEWTGAAITTRGTF-FPQGKIVGANERKLYLFIEG 1010
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKY----RLPNAPPDGEKPLYLHIS 162
E+ IND + R+K+T + T I + TGA + TRG++ R+P GE+ LYL I
Sbjct: 1070 ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGP---GERKLYLFIE 1126
Query: 163 AGAHVKTAERILAVDHAAAMVEEMLK 188
+ +V HA A ++ +L+
Sbjct: 1127 GPSEK-------SVKHAKAELKRVLE 1145
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HVKTAERILAVDHAAAMVEEMLKQ 189
LAV A A + ++K+
Sbjct: 996 E-------LAVQKAKAEITRLIKE 1012
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 935 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 994
Query: 166 HVKTAERILAVDHAAAMVEEMLKQ 189
LAV A A + ++K+
Sbjct: 995 E-------LAVQKAKAEITRLIKE 1011
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HVKTAERILAVDHAAAMVEEMLKQ 189
LAV A A + ++K+
Sbjct: 996 E-------LAVQKAKAEITRLIKE 1012
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 166 HVKTAERILAVDHAAAMVEEMLKQ 189
LAV A A + ++K+
Sbjct: 996 E-------LAVQKAKAEITRLIKE 1012
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 165
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 922 ELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 981
Query: 166 HVKTAERILAVDHAAAMVEEMLKQ 189
LAV A A + ++K+
Sbjct: 982 E-------LAVQKAKAEITRLIKE 998
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 259
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 260 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292
L GE+ +PLH +++N +++++A N+L
Sbjct: 196 LPGED--EPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 222 LNIAARIRGPNDQYINHIMNETGATVLLRGRGS-----GNSEGLQGEEVHQPLHLFLSSN 276
+N + GP + + E+GA + +RG+GS G S+ + LH + ++
Sbjct: 195 INFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEGKGRSDAAHASNQEEDLHCLIMAD 254
Query: 277 NPKSLEEAKRLAENLLDTISA 297
+ + +AK+L N+++T ++
Sbjct: 255 TEEKVNKAKKLVHNVIETAAS 275
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 222 LNIAARIRGPNDQYINHIMNETGATVLLRGRGS-----GNSEGLQGEEVHQPLHLFLSSN 276
+N + GP + + E+GA + +RG+GS G S+ + LH + ++
Sbjct: 210 INFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGKGRSDAAHSSNQEEDLHCLIMAD 269
Query: 277 NPKSLEEAKRLAENLLDTISA 297
+ + +AK+L N+++T ++
Sbjct: 270 TEEKVNKAKKLIHNIIETAAS 290
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 259
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 260 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292
L GE+ +PLH +++N +++++A N+L
Sbjct: 196 LPGED--EPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 107 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGK-YRLPNAPPDGEKPLYLHISA-- 163
E+ IND + R+K+T + T I + +GA + TRGK Y P E+ LYL +
Sbjct: 893 ELEINDFPQNARWKVTHKETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPT 952
Query: 164 GAHVKTAE 171
VKTA+
Sbjct: 953 EISVKTAK 960
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 222 LNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGL----QGEEVHQPLHLFL 273
+N + GP + + ++GA + +RG+GS +S+G G ++ LH+ +
Sbjct: 162 INFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLI 221
Query: 274 SSNNPKSLEEAKRLAENLLDTI 295
++++P + +A +L ++D +
Sbjct: 222 TADSPLKISKAVKLVNEIIDKL 243
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 222 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 271
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 272 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 318
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 222 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 271
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 272 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 318
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,668,230
Number of Sequences: 539616
Number of extensions: 10163858
Number of successful extensions: 58076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 663
Number of HSP's that attempted gapping in prelim test: 48563
Number of HSP's gapped (non-prelim): 7154
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)