Query 008326
Match_columns 570
No_of_seqs 201 out of 493
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 23:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 1.4E-30 4.9E-35 232.3 9.5 104 202-305 6-110 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 2.1E-27 7.1E-32 217.5 0.2 97 208-304 2-111 (140)
3 1k1g_A SF1-BO isoform; splicin 99.9 3.1E-25 1.1E-29 200.3 6.4 98 206-303 5-111 (131)
4 3krm_A Insulin-like growth fac 99.3 5.1E-12 1.7E-16 113.9 12.0 148 116-299 13-161 (163)
5 2jvz_A KH type-splicing, FAR u 99.3 6.1E-11 2.1E-15 106.3 14.4 158 105-296 3-162 (164)
6 1j4w_A FUSE binding protein; s 99.1 5.3E-10 1.8E-14 102.1 11.8 147 117-292 14-174 (174)
7 2jzx_A Poly(RC)-binding protei 99.1 6.4E-10 2.2E-14 99.9 10.4 152 105-293 6-158 (160)
8 2anr_A Neuro-oncological ventr 99.1 5.9E-10 2E-14 102.0 10.2 158 105-293 7-174 (178)
9 2opv_A KHSRP protein; KH domai 98.9 4.4E-09 1.5E-13 87.2 8.1 72 207-293 13-84 (85)
10 1x4m_A FAR upstream element bi 98.7 1.6E-08 5.5E-13 85.5 5.9 75 204-293 11-85 (94)
11 1zzk_A Heterogeneous nuclear r 98.7 3.2E-08 1.1E-12 81.5 6.3 73 207-296 6-78 (82)
12 1x4n_A FAR upstream element bi 98.6 1.8E-08 6.1E-13 84.9 4.6 72 207-295 14-85 (92)
13 1dtj_A RNA-binding neurooncolo 98.6 5.1E-08 1.8E-12 78.5 6.3 71 209-293 4-74 (76)
14 2hh3_A KH-type splicing regula 98.6 7.9E-08 2.7E-12 83.7 6.6 70 209-295 12-81 (106)
15 2hh2_A KH-type splicing regula 98.6 7.1E-08 2.4E-12 83.6 6.1 72 209-294 8-79 (107)
16 2e3u_A PH-DIM2P, hypothetical 98.6 4.3E-08 1.5E-12 95.2 5.2 148 107-294 37-191 (219)
17 1j5k_A Heterogeneous nuclear r 98.5 4.5E-08 1.5E-12 81.9 4.4 76 206-298 12-87 (89)
18 2ctm_A Vigilin; K homology typ 98.5 8.9E-08 3.1E-12 81.7 6.1 77 207-301 16-92 (95)
19 2cte_A Vigilin; K homology typ 98.5 6.6E-08 2.3E-12 81.9 4.9 71 207-296 16-86 (94)
20 2ctl_A Vigilin; K homology typ 98.5 1.8E-07 6E-12 80.0 7.2 77 207-299 16-92 (97)
21 1we8_A Tudor and KH domain con 98.5 1.3E-07 4.4E-12 81.3 6.3 73 208-295 15-87 (104)
22 1wvn_A Poly(RC)-binding protei 98.5 9.4E-08 3.2E-12 78.6 4.4 72 207-295 5-76 (82)
23 2p2r_A Poly(RC)-binding protei 98.5 9E-08 3.1E-12 77.5 4.1 69 208-293 5-73 (76)
24 1ec6_A RNA-binding protein NOV 98.5 1.4E-07 4.7E-12 78.4 5.3 76 209-298 4-79 (87)
25 2dgr_A Ring finger and KH doma 98.4 1.4E-07 4.7E-12 79.1 4.6 66 207-292 9-74 (83)
26 2ctk_A Vigilin; K homology typ 98.4 1.6E-07 5.4E-12 81.4 4.9 75 208-301 17-91 (104)
27 1vig_A Vigilin; RNA-binding pr 98.4 2.9E-07 1E-11 74.2 5.0 66 208-292 5-70 (71)
28 2axy_A Poly(RC)-binding protei 98.3 3.1E-07 1.1E-11 74.4 4.0 67 208-293 5-71 (73)
29 1tua_A Hypothetical protein AP 98.3 8.2E-07 2.8E-11 84.9 5.8 138 117-294 15-160 (191)
30 2qnd_A FMR1 protein; KH domain 98.1 9.5E-06 3.3E-10 73.4 9.5 137 104-295 4-143 (144)
31 2jvz_A KH type-splicing, FAR u 98.0 7.1E-06 2.4E-10 73.4 7.0 70 210-294 4-73 (164)
32 1j4w_A FUSE binding protein; s 97.9 6.5E-06 2.2E-10 75.1 4.9 69 210-295 5-73 (174)
33 2ctj_A Vigilin; K homology typ 97.9 6.7E-06 2.3E-10 70.4 4.4 69 208-295 17-86 (95)
34 2cpq_A FragIle X mental retard 97.8 6.9E-06 2.4E-10 70.7 2.6 63 209-292 16-79 (91)
35 1k1g_A SF1-BO isoform; splicin 97.8 4.3E-05 1.5E-09 69.1 7.1 76 108-190 13-100 (131)
36 2yqr_A KIAA0907 protein; struc 97.7 5.4E-05 1.9E-09 67.7 6.8 65 118-189 32-99 (119)
37 2jzx_A Poly(RC)-binding protei 97.7 2.5E-05 8.6E-10 70.0 4.2 68 208-294 5-72 (160)
38 2anr_A Neuro-oncological ventr 97.7 2.7E-05 9.2E-10 71.1 4.3 72 208-293 6-77 (178)
39 3krm_A Insulin-like growth fac 97.7 3.7E-05 1.3E-09 69.1 5.1 69 210-294 5-73 (163)
40 3u1k_A Polyribonucleotide nucl 97.4 0.0001 3.4E-09 81.3 4.4 62 210-293 569-630 (630)
41 2ctf_A Vigilin; K homology typ 97.0 0.0013 4.4E-08 56.8 7.2 70 208-299 27-97 (102)
42 4aid_A Polyribonucleotide nucl 96.7 0.001 3.5E-08 74.5 4.8 56 224-295 580-635 (726)
43 2bl5_A MGC83862 protein, quaki 96.6 0.0016 5.6E-08 59.8 4.6 80 108-189 8-101 (140)
44 3n89_A Defective in GERM LINE 96.6 0.0036 1.2E-07 65.5 7.6 72 208-292 186-259 (376)
45 2e3u_A PH-DIM2P, hypothetical 96.4 0.0026 9E-08 61.8 4.8 63 209-292 35-101 (219)
46 2qnd_A FMR1 protein; KH domain 96.0 0.0039 1.3E-07 56.3 3.5 61 208-288 4-64 (144)
47 3n89_A Defective in GERM LINE 95.5 0.0057 1.9E-07 64.0 3.1 75 206-292 28-104 (376)
48 2opv_A KHSRP protein; KH domai 94.7 0.13 4.6E-06 42.2 8.3 70 105-189 15-85 (85)
49 1zzk_A Heterogeneous nuclear r 94.4 0.14 4.7E-06 41.8 7.7 70 104-190 7-77 (82)
50 2hh2_A KH-type splicing regula 93.7 0.086 2.9E-06 45.4 5.4 71 107-191 10-81 (107)
51 1x4m_A FAR upstream element bi 93.6 0.11 3.6E-06 43.7 5.7 72 104-190 15-87 (94)
52 1we8_A Tudor and KH domain con 93.4 0.24 8.2E-06 42.3 7.7 77 100-191 11-88 (104)
53 1wvn_A Poly(RC)-binding protei 93.4 0.11 3.7E-06 42.4 5.3 69 105-190 7-76 (82)
54 3cdi_A Polynucleotide phosphor 93.1 0.025 8.7E-07 63.4 1.5 54 224-293 570-623 (723)
55 3v69_A Protein filia; RNA-bind 93.1 0.15 5.3E-06 47.1 6.3 68 221-300 63-130 (140)
56 2hh3_A KH-type splicing regula 92.8 0.17 5.7E-06 43.9 5.8 67 107-190 14-81 (106)
57 2cte_A Vigilin; K homology typ 92.7 0.25 8.7E-06 41.4 6.7 68 104-190 17-85 (94)
58 2dgr_A Ring finger and KH doma 92.7 0.19 6.4E-06 41.9 5.8 67 104-190 10-77 (83)
59 2p2r_A Poly(RC)-binding protei 92.5 0.25 8.5E-06 39.6 6.2 69 105-190 6-75 (76)
60 1x4n_A FAR upstream element bi 92.5 0.26 9E-06 41.1 6.5 71 104-191 15-86 (92)
61 1dtj_A RNA-binding neurooncolo 92.4 0.19 6.5E-06 40.0 5.3 69 107-189 6-75 (76)
62 1ec6_A RNA-binding protein NOV 91.8 0.33 1.1E-05 39.9 6.2 63 116-190 13-76 (87)
63 1j5k_A Heterogeneous nuclear r 91.7 0.31 1.1E-05 40.4 5.9 70 104-190 14-84 (89)
64 1vig_A Vigilin; RNA-binding pr 91.1 0.31 1.1E-05 39.0 5.2 64 105-187 6-70 (71)
65 2axy_A Poly(RC)-binding protei 91.0 0.44 1.5E-05 38.2 6.0 66 106-190 7-73 (73)
66 1e3p_A Guanosine pentaphosphat 91.0 0.047 1.6E-06 61.6 0.4 53 224-292 608-660 (757)
67 1tua_A Hypothetical protein AP 90.1 0.36 1.2E-05 46.2 5.6 68 209-297 5-76 (191)
68 2ctl_A Vigilin; K homology typ 90.0 0.8 2.7E-05 38.8 7.1 70 104-189 17-87 (97)
69 2ctk_A Vigilin; K homology typ 89.5 0.56 1.9E-05 40.3 5.8 67 104-189 17-84 (104)
70 2ctm_A Vigilin; K homology typ 88.3 0.77 2.6E-05 38.8 5.7 68 104-189 17-85 (95)
71 4fxw_B Splicing factor 1; UHM, 86.1 0.51 1.7E-05 42.8 3.6 49 149-199 70-121 (124)
72 2ctj_A Vigilin; K homology typ 80.0 3.1 0.00011 35.3 5.9 66 105-189 18-85 (95)
73 2ctf_A Vigilin; K homology typ 66.5 10 0.00035 32.4 5.8 64 104-189 27-92 (102)
74 2cpq_A FragIle X mental retard 50.4 9.2 0.00031 32.7 2.7 62 104-186 15-78 (91)
75 2z0s_A Probable exosome comple 43.8 29 0.001 33.4 5.5 46 224-285 158-203 (235)
76 1wjw_A Phosphoacetylglucosamin 35.5 1.3E+02 0.0045 25.8 7.8 50 234-298 45-96 (112)
77 2cxc_A NUSA; transcription ter 33.5 10 0.00036 34.8 0.5 27 225-251 47-73 (144)
78 3u1k_A Polyribonucleotide nucl 33.3 28 0.00097 38.6 3.9 60 107-188 570-630 (630)
79 2ba0_A Archeal exosome RNA bin 27.1 43 0.0015 32.3 3.6 40 223-278 145-184 (229)
80 4hhu_A OR280; engineered prote 26.0 1.2E+02 0.0042 27.8 6.1 36 237-284 63-100 (170)
81 3iev_A GTP-binding protein ERA 24.5 19 0.00063 35.2 0.5 40 206-250 238-285 (308)
82 3ldc_A Calcium-gated potassium 23.7 42 0.0014 27.0 2.4 15 398-413 43-57 (82)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=1.4e-30 Score=232.34 Aligned_cols=104 Identities=37% Similarity=0.666 Sum_probs=99.5
Q ss_pred CCCcccceeEEEecCC-CCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 008326 202 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 280 (570)
Q Consensus 202 ~~G~k~~~eKI~Ipld-~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~ 280 (570)
..|++|+++|||||++ ++|+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|++.+.++
T Consensus 6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~ 85 (119)
T 2yqr_A 6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 85 (119)
T ss_dssp CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence 3577999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Q 008326 281 LEEAKRLAENLLDTISAECGASRVS 305 (570)
Q Consensus 281 l~kAk~LiEnLL~tV~eE~~a~r~~ 305 (570)
+++|++||++||.+++++|+.|+..
T Consensus 86 i~~A~~~Ie~Ll~~v~~~~~~~~~q 110 (119)
T 2yqr_A 86 LAAAKKLCENLLQTVHAEYSRFVNQ 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHh
Confidence 9999999999999999999999633
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.93 E-value=2.1e-27 Score=217.49 Aligned_cols=97 Identities=21% Similarity=0.413 Sum_probs=86.6
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCC----CCCC----CCCCCCcEEEEEeCCHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSE----GLQG----EEVHQPLHLFLSSNNPK 279 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E----~~~g----~EsdEPLHV~Isa~~~e 279 (570)
+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.. ...| ++.+|||||+|++.+++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 579999999999999999999999999999999999999999999999742 1122 36899999999999886
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhccccc
Q 008326 280 -----SLEEAKRLAENLLDTISAECGASRV 304 (570)
Q Consensus 280 -----~l~kAk~LiEnLL~tV~eE~~a~r~ 304 (570)
.|++|+++|++||.++.+.++.+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~ 111 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKK 111 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHH
Confidence 8999999999999999887777763
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.91 E-value=3.1e-25 Score=200.30 Aligned_cols=98 Identities=21% Similarity=0.362 Sum_probs=86.3
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCC------CCCCCCCCCcEEEEEeCCHH
Q 008326 206 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG------LQGEEVHQPLHLFLSSNNPK 279 (570)
Q Consensus 206 k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~------~~g~EsdEPLHV~Isa~~~e 279 (570)
..+++|||||++.||+|||+|+||||+|+|+|+||+||||||.||||||++.+. ...++++|||||+|++.+.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468899999999999999999999999999999999999999999999998632 22357899999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHhcccc
Q 008326 280 SLEEAKRLAENLLDT---ISAECGASR 303 (570)
Q Consensus 280 ~l~kAk~LiEnLL~t---V~eE~~a~r 303 (570)
.+++|+++|++||.. +-+.++.++
T Consensus 85 ~~~~A~~~I~~ll~~~~~~p~~~d~~k 111 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGIETPEDQNDLR 111 (131)
T ss_dssp HHHHHHHHHHHHHTTTTSCCTTSSGGG
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 999999999999976 444555554
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.35 E-value=5.1e-12 Score=113.94 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=107.9
Q ss_pred cccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHHHHHcCCCCC
Q 008326 116 SVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGF 194 (570)
Q Consensus 116 ~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkEiLke~P~~~ 194 (570)
.++.++-+ |+++++|++.|||.|.+--.-+| +..--.+.|.|.. ..+.+|..+|.++|.+...+.
T Consensus 13 ~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~------~~~~r~v~I~G~~--------e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 13 AVGAIIGKKGQHIKQLSRFASASIKIAPPETP------DSKVRMVIITGPP--------EAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST------TCSEEEEEEEECH--------HHHHHHHHHHHHHHHHTTSSC
T ss_pred hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC------CCCceEEEEEcCH--------HHHHHHHHHHHHHHhcccccc
Confidence 35666755 99999999999999976432111 2333456788854 478999999999988763332
Q ss_pred CccccccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEE
Q 008326 195 PTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS 274 (570)
Q Consensus 195 p~~~~p~~~G~k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Is 274 (570)
+. .......++.||- +++|+|||++|.++|+|+++|||+|.|-..|.. ...+.-.|.|+
T Consensus 79 ~~-------~~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--------~~~~~~~v~I~ 137 (163)
T 3krm_A 79 PK-------EEVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--------DENDQVIVKII 137 (163)
T ss_dssp SS-------CCCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--------CTTSEEEEEEE
T ss_pred cc-------cCCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--------CCCCceEEEEE
Confidence 11 1123445777873 579999999999999999999999999764321 12334478999
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHHHh
Q 008326 275 SNNPKSLEEAKRLAENLLDTISAEC 299 (570)
Q Consensus 275 a~~~e~l~kAk~LiEnLL~tV~eE~ 299 (570)
| +++++++|+++|++||..+++..
T Consensus 138 G-~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 138 G-HFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp E-CHHHHHHHHHHHHHHHHHHTC--
T ss_pred e-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 89999999999999999887664
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.27 E-value=6.1e-11 Score=106.31 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=108.4
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMV 183 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskI 183 (570)
..+|.|..- .+++++-+ |+++++|+++|||.|.+-- ....++..--.+.|.|.. ..|++|..+|
T Consensus 3 ~~~~~Vp~~--~~g~iIGk~G~~Ik~i~~~tg~~I~i~~-----~~~~~~~~~r~v~I~G~~--------~~v~~A~~~I 67 (164)
T 2jvz_A 3 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQ-----DGSQNTNVDKPLRIIGDP--------YKVQQACEMV 67 (164)
T ss_dssp EEEEEECTT--CHHHHTCTTTHHHHHHHHTSCSEEEECC-----CTTSSSSSCEEEEEEECH--------HHHHHHHHHH
T ss_pred EEEEEechh--heeEEECCChHHHHHHHHHhCCeEEEec-----CCCCCCCCceEEEEEcCH--------HHHHHHHHHH
Confidence 345666544 36777754 9999999999999986621 111112222356788853 4799999999
Q ss_pred HHHHHcCCCCCCccccccCCCcc-cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCC
Q 008326 184 EEMLKQGHAGFPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQG 262 (570)
Q Consensus 184 kEiLke~P~~~p~~~~p~~~G~k-~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g 262 (570)
.++|.+....... ..+.++.. ....++.||- +++|+|||++|.++|+|+++|||+|.|-....
T Consensus 68 ~~ii~e~~~~~~~--~~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-------- 131 (164)
T 2jvz_A 68 MDILRERDQGGFG--DRNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-------- 131 (164)
T ss_dssp HHHTTCSSSCCCS--SCSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT--------
T ss_pred HHHHHhccCCCCC--CccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC--------
Confidence 9998875321100 01223321 2345666662 36999999999999999999999999975321
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 008326 263 EEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 296 (570)
Q Consensus 263 ~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~tV~ 296 (570)
....-.|.|+|. ++++++|++++++||+.+.
T Consensus 132 --~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 132 --TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp --TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 122357888886 9999999999999998754
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.10 E-value=5.3e-10 Score=102.13 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=97.7
Q ss_pred cccee-cchhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHHHHHcCCC--C
Q 008326 117 VRYKL-TKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHA--G 193 (570)
Q Consensus 117 ~Ry~L-TKg~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkEiLke~P~--~ 193 (570)
++.++ .+|+++++|+++|||.|.+... .....+ -.+.|.|.. ..|++|+.+|.+++.+... +
T Consensus 14 vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~--r~v~I~G~~--------~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPE--RIAQITGPP--------DRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSE--EEEEEEECH--------HHHHHHHHHHHHHHHHHC----
T ss_pred eeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCc--cEEEEEeCH--------HHHHHHHHHHHHHHHhcccCCC
Confidence 45555 4599999999999999987531 111122 345788864 4799999999999876421 1
Q ss_pred CCc-cc---cc---cCC--Cc--ccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCC
Q 008326 194 FPT-LQ---TV---MGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQG 262 (570)
Q Consensus 194 ~p~-~~---~p---~~~--G~--k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g 262 (570)
..+ +. +. ..+ +. .....++.||- +++|+|||++|.++|+|+++|||+|.|-..... .
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~------~ 146 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPP------N 146 (174)
T ss_dssp -------------------------CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTT------T
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCC------C
Confidence 000 00 00 000 00 12356677763 469999999999999999999999999864211 1
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 008326 263 EEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292 (570)
Q Consensus 263 ~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL 292 (570)
.+ ...=.|.|+| +.+++++|++||+++|
T Consensus 147 ~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 AD-PNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp SC-TTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CC-CCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 11 1223578888 8999999999999986
No 7
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.4e-10 Score=99.93 Aligned_cols=152 Identities=15% Similarity=0.151 Sum_probs=105.4
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMV 183 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskI 183 (570)
.-++.|..- .++.++-+ |.++++|+++|||.|.+... +..--.+.|.|.. ..|++|..+|
T Consensus 6 ~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~--------~~v~~A~~~I 66 (160)
T 2jzx_A 6 TIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT--------NAIFKAFAMI 66 (160)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEH--------HHHHHHHHHH
T ss_pred EEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCH--------HHHHHHHHHH
Confidence 445555432 35666644 89999999999999987531 1223456788863 4789999999
Q ss_pred HHHHHcCCCCCCccccccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCC
Q 008326 184 EEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE 263 (570)
Q Consensus 184 kEiLke~P~~~p~~~~p~~~G~k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~ 263 (570)
.++|.+........+. .........++.||- +++|+|||++|.++|.|+++|||+|.|.+.. .
T Consensus 67 ~~~i~e~~~~~~~~~~--~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~------~--- 129 (160)
T 2jzx_A 67 IDKLEEDISSSMTNST--AASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM------L--- 129 (160)
T ss_dssp HHHHHHHHTSCCCSSS--CCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC------S---
T ss_pred HHHHHhhccccCCCCc--cCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC------C---
Confidence 9888775211100000 011123467777873 5799999999999999999999999997521 1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008326 264 EVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293 (570)
Q Consensus 264 EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~ 293 (570)
.....=.|.|+| +++++++|+++++++|.
T Consensus 130 ~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 130 PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 112345788999 89999999999999874
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.05 E-value=5.9e-10 Score=101.96 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=103.8
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeee--ccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAA 181 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTR--GrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avs 181 (570)
.-+|.|..- .++.++-| |+++++|+++|||.|.+. +.++|. ..++ .+.|.|.. ..+++|..
T Consensus 7 ~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~----~~er--~v~I~G~~--------~~v~~A~~ 70 (178)
T 2anr_A 7 FLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG----TTER--VCLIQGTI--------EALNAVHG 70 (178)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT----SSEE--EEEEEECH--------HHHHHHHH
T ss_pred EEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC----CCCc--eEEEEeCH--------HHHHHHHH
Confidence 345555432 35666655 899999999999999763 222221 1233 45688863 47999999
Q ss_pred HHHHHHHcCCCCCCccc-----cc--cCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCC
Q 008326 182 MVEEMLKQGHAGFPTLQ-----TV--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS 254 (570)
Q Consensus 182 kIkEiLke~P~~~p~~~-----~p--~~~G~k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGS 254 (570)
+|.+++.+.+....... .+ ..+.......++.||- +++|+|||++|.++|.|+++|||+|.|-....
T Consensus 71 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~ 144 (178)
T 2anr_A 71 FIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQKPD 144 (178)
T ss_dssp HHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-
T ss_pred HHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCCCC
Confidence 99999987643211000 00 0001123456777873 47899999999999999999999999975321
Q ss_pred CCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008326 255 GNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293 (570)
Q Consensus 255 g~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~ 293 (570)
. .. ...=.|.|+|. .+++++|+++++++|.
T Consensus 145 ~-------~~-~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 145 G-------IN-LQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp -----------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred C-------CC-CCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 1 01 12246777776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.88 E-value=4.4e-09 Score=87.20 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=59.1
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
....+|.||-+ ++|+|||++|.++|.|+++|||+|.|...|+. ....+-+|.|+| +++++++|++
T Consensus 13 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--------~~~~er~v~I~G-~~~~v~~A~~ 77 (85)
T 2opv_A 13 GTVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACE 77 (85)
T ss_dssp SEEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--------STTSCEEEEEEE-CHHHHHHHHH
T ss_pred CEEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--------CCCCceEEEEEe-CHHHHHHHHH
Confidence 34577888743 69999999999999999999999999875542 112345799999 9999999999
Q ss_pred HHHHHHH
Q 008326 287 LAENLLD 293 (570)
Q Consensus 287 LiEnLL~ 293 (570)
+|++|+.
T Consensus 78 ~I~~i~~ 84 (85)
T 2opv_A 78 MVMDILR 84 (85)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999974
No 10
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.70 E-value=1.6e-08 Score=85.52 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=60.5
Q ss_pred CcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHH
Q 008326 204 GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEE 283 (570)
Q Consensus 204 G~k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~k 283 (570)
++.....+|.||-+ ++|+|||++|.++|+|+++|||+|.|...|... ....-.|.|++ +++++++
T Consensus 11 ~p~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~r~v~I~G-~~~~v~~ 75 (94)
T 1x4m_A 11 GPGNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------TGADKPLRITG-DPYKVQQ 75 (94)
T ss_dssp CCCCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------SCSCEEEEEEE-CTTTHHH
T ss_pred CCCcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------CCCceEEEEEe-CHHHHHH
Confidence 33456678888743 799999999999999999999999998654321 12346789999 9999999
Q ss_pred HHHHHHHHHH
Q 008326 284 AKRLAENLLD 293 (570)
Q Consensus 284 Ak~LiEnLL~ 293 (570)
|+++|++||.
T Consensus 76 A~~~I~~~i~ 85 (94)
T 1x4m_A 76 AKEMVLELIR 85 (94)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999999985
No 11
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.65 E-value=3.2e-08 Score=81.48 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=58.7
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|... . .....-.|.|+| +++++++|++
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---~~~~~~~v~I~G-~~~~v~~A~~ 68 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------L---EGSEDRIITITG-TQDQIQNAQY 68 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------T---SCSSEEEEEEEE-CHHHHHHHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCC-------C---CCCCceEEEEEe-CHHHHHHHHH
Confidence 45677888854 68999999999999999999999999642 0 112235789999 6999999999
Q ss_pred HHHHHHHHHH
Q 008326 287 LAENLLDTIS 296 (570)
Q Consensus 287 LiEnLL~tV~ 296 (570)
+++++|....
T Consensus 69 ~I~~~i~~~~ 78 (82)
T 1zzk_A 69 LLQNSVKQYS 78 (82)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999987653
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.64 E-value=1.8e-08 Score=84.92 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=58.8
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|..... ....-.|.|++. ++++++|++
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------g~~~r~v~I~G~-~e~v~~A~~ 76 (92)
T 1x4n_A 14 VMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSG----------GLPERSCMLTGT-PESVQSAKR 76 (92)
T ss_dssp CEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCT----------TCSEEEEEEEEC-HHHHHHHHH
T ss_pred CEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCC----------CCCccEEEEEeC-HHHHHHHHH
Confidence 45677888753 7999999999999999999999999986421 122357888886 999999999
Q ss_pred HHHHHHHHH
Q 008326 287 LAENLLDTI 295 (570)
Q Consensus 287 LiEnLL~tV 295 (570)
||+++|...
T Consensus 77 ~I~~~i~~~ 85 (92)
T 1x4n_A 77 LLDQIVEKG 85 (92)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998754
No 13
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.61 E-value=5.1e-08 Score=78.50 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.6
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~Li 288 (570)
..++.||-+ ++|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|++++
T Consensus 4 ~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------~~~~~~~v~I~G~-~~~v~~A~~~I 69 (76)
T 1dtj_A 4 LVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (76)
T ss_dssp EEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------TTCCEEEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 456777743 689999999999999999999999998643211 1123357888886 99999999999
Q ss_pred HHHHH
Q 008326 289 ENLLD 293 (570)
Q Consensus 289 EnLL~ 293 (570)
+++|.
T Consensus 70 ~~~i~ 74 (76)
T 1dtj_A 70 SQRVT 74 (76)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99874
No 14
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=7.9e-08 Score=83.69 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=56.3
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~Li 288 (570)
..+|.||-+ ++|+|||++|.+||+|+++|||+|.|...+ .....-.|.|++. ++++++|++||
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----------~~~~er~V~I~G~-~e~v~~A~~~I 74 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----------GTGPEKIAHIMGP-PDRCEHAARII 74 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSC----------SSSSEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCC----------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 467778744 589999999999999999999999997421 1122357888876 99999999999
Q ss_pred HHHHHHH
Q 008326 289 ENLLDTI 295 (570)
Q Consensus 289 EnLL~tV 295 (570)
++||...
T Consensus 75 ~~ii~~~ 81 (106)
T 2hh3_A 75 NDLLQSL 81 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998754
No 15
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=7.1e-08 Score=83.56 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=56.4
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~Li 288 (570)
..+|.||-+ ++|+|||++|.+||+|+++|||+|.|.....- . .....-.|.|++ +.+++++|+++|
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------~-~~~~~r~V~I~G-~~e~v~~A~~~I 73 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPP------N-GDPNFKLFIIRG-SPQQIDHAKQLI 73 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT------T-CCTTEEEEEEES-CHHHHHHHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC------C-CCCCceEEEEEC-CHHHHHHHHHHH
Confidence 567788743 68999999999999999999999999763211 0 112235677888 999999999999
Q ss_pred HHHHHH
Q 008326 289 ENLLDT 294 (570)
Q Consensus 289 EnLL~t 294 (570)
+++|..
T Consensus 74 ~~~i~e 79 (107)
T 2hh2_A 74 EEKIEG 79 (107)
T ss_dssp HHHSCS
T ss_pred HHHHhc
Confidence 999753
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.55 E-value=4.3e-08 Score=95.20 Aligned_cols=148 Identities=21% Similarity=0.222 Sum_probs=96.0
Q ss_pred EEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHH
Q 008326 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkE 185 (570)
.|.|..- +.++++-+ |.+++.|+++||+.|..-- .+... .|.+.+...+. .++++|...|+.
T Consensus 37 ~i~IP~~--kig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d~---~~i~kA~~~I~~ 99 (219)
T 2e3u_A 37 YVKIPKD--RIAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETEDP---LAVWKARDIVLA 99 (219)
T ss_dssp EEECCHH--HHHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCSH---HHHHHHHHHHHH
T ss_pred EEEeCHH--HhhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCCH---HHHHHHHHHHHH
Confidence 6667655 47777766 8999999999999987631 13333 35554421122 489999999999
Q ss_pred HHHcCCCCCCccccc-cCCCcccceeEEEecC---CCCCCC--ceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCC
Q 008326 186 MLKQGHAGFPTLQTV-MGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG 259 (570)
Q Consensus 186 iLke~P~~~p~~~~p-~~~G~k~~~eKI~Ipl---d~~P~F--NfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~ 259 (570)
+...- .++.... .... ...+.+-|+. ..-+++ ..+|+|||++|.|+|.||+.|||+|+|-|+
T Consensus 100 i~rg~---~~e~g~~ll~dd--~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~------- 167 (219)
T 2e3u_A 100 IGRGF---SPERAFRLLNEG--EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGK------- 167 (219)
T ss_dssp HHTTC---CHHHHGGGGSTT--CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETT-------
T ss_pred HhccC---CccccceeccCC--ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCe-------
Confidence 87421 1110000 0000 1112233331 112222 258999999999999999999999999641
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 008326 260 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 294 (570)
Q Consensus 260 ~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~t 294 (570)
.|+|.| +.++++.|++++++||+.
T Consensus 168 ----------~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 168 ----------TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp ----------EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred ----------EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 377777 788899999999999964
No 17
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.55 E-value=4.5e-08 Score=81.87 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=59.1
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008326 206 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 285 (570)
Q Consensus 206 k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk 285 (570)
.....+|.||.+ ++|+|||++|.++|+|+++|||+|.|... .. + ...-.|.|++. ++++++|+
T Consensus 12 ~~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~--~-~~~~~v~I~G~-~e~v~~A~ 74 (89)
T 1j5k_A 12 PIITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LE--G-SEDRIITITGT-QDQIQNAQ 74 (89)
T ss_dssp CEEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CS--S-SSEEEEEEEEE-HHHHHHHH
T ss_pred CeEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCC-------CC--C-CCccEEEEEcC-HHHHHHHH
Confidence 356677888743 79999999999999999999999999642 00 1 12357888887 99999999
Q ss_pred HHHHHHHHHHHHH
Q 008326 286 RLAENLLDTISAE 298 (570)
Q Consensus 286 ~LiEnLL~tV~eE 298 (570)
++|+++|......
T Consensus 75 ~~I~~~i~e~~g~ 87 (89)
T 1j5k_A 75 YLLQNSVKQYSGK 87 (89)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHhhhcC
Confidence 9999998765433
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.54 E-value=8.9e-08 Score=81.69 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=62.6
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
.....+.||.+ ++|+|||++|.+++.|+++|||+|.|-..|+. ..-.|.|+|. ++++++|++
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-----------~~~~V~I~G~-~e~v~~A~~ 77 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----------DPNCVTVTGL-PENVEEAID 77 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-----------CTTEEEEESC-HHHHHHHHH
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCC-----------CCcEEEEEcC-HHHHHHHHH
Confidence 45677778744 58999999999999999999999999654431 2457999998 699999999
Q ss_pred HHHHHHHHHHHHhcc
Q 008326 287 LAENLLDTISAECGA 301 (570)
Q Consensus 287 LiEnLL~tV~eE~~a 301 (570)
++++|+....+++..
T Consensus 78 ~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 78 HILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999877776654
No 19
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.53 E-value=6.6e-08 Score=81.88 Aligned_cols=71 Identities=10% Similarity=0.119 Sum_probs=58.0
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
.....|.||-+ ++|.|||++|.++|+|+++|||+|.|-..+ ++.-.|.|+|. .+++++|++
T Consensus 16 ~~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------------~~~~~V~I~G~-~e~v~~A~~ 76 (94)
T 2cte_A 16 QASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPD------------DPSNQIKITGT-KEGIEKARH 76 (94)
T ss_dssp CEEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTT------------SSCCEEEEEEC-HHHHHHHHH
T ss_pred ceEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCC------------CCCCeEEEEEC-HHHHHHHHH
Confidence 34577778744 589999999999999999999999995421 11248999998 999999999
Q ss_pred HHHHHHHHHH
Q 008326 287 LAENLLDTIS 296 (570)
Q Consensus 287 LiEnLL~tV~ 296 (570)
+|++|+....
T Consensus 77 ~I~~i~~~~~ 86 (94)
T 2cte_A 77 EVLLISAEQD 86 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 9999987654
No 20
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.51 E-value=1.8e-07 Score=80.03 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=61.2
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
.+..++.||-+ ++|+|||++|.++|+|+++|||+|.|--.|.. ....-.|.|+|. .+++++|++
T Consensus 16 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~---------~~~~~~V~I~G~-~e~v~~A~~ 79 (97)
T 2ctl_A 16 SFKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG---------NQPQDQITITGY-EKNTEAARD 79 (97)
T ss_dssp TCEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTC---------SSCSSEEEEESC-HHHHHHHHH
T ss_pred ceeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCC---------CCCccEEEEEeC-HHHHHHHHH
Confidence 45677777733 58999999999999999999999999654321 123357999997 999999999
Q ss_pred HHHHHHHHHHHHh
Q 008326 287 LAENLLDTISAEC 299 (570)
Q Consensus 287 LiEnLL~tV~eE~ 299 (570)
+|++|+..+.+..
T Consensus 80 ~I~~iv~e~e~~~ 92 (97)
T 2ctl_A 80 AILRIVGELEQMS 92 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999998766543
No 21
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.51 E-value=1.3e-07 Score=81.32 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=57.8
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
...+|.||.+ ++|+|||++|.++|.|+++|||+|.|-....+. ..+.-.|.|+|.+. ++++|+++
T Consensus 15 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~~~V~I~G~~~-~v~~A~~~ 79 (104)
T 1we8_A 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT--------LLLSRLIKISGTQK-EVAAAKHL 79 (104)
T ss_dssp EEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------SSSEEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------CCCcceEEEEcCHH-HHHHHHHH
Confidence 4577888744 699999999999999999999999997643211 12346788988666 79999999
Q ss_pred HHHHHHHH
Q 008326 288 AENLLDTI 295 (570)
Q Consensus 288 iEnLL~tV 295 (570)
|+++|...
T Consensus 80 I~~~i~e~ 87 (104)
T 1we8_A 80 ILEKVSED 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998753
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=9.4e-08 Score=78.57 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
....++.||-+ ++|.|||++|.++|+|+++|||+|.|.... +....-.|.|+|. ++++++|++
T Consensus 5 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------~~~~~r~v~I~G~-~~~v~~A~~ 67 (82)
T 1wvn_A 5 QTTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV----------EGSSGRQVTITGS-AASISLAQY 67 (82)
T ss_dssp CEEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------TTCSEEEEEEEEC-HHHHHHHHH
T ss_pred cEEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC----------CCCCceEEEEEcC-HHHHHHHHH
Confidence 34567888743 689999999999999999999999997521 1123457888885 599999999
Q ss_pred HHHHHHHHH
Q 008326 287 LAENLLDTI 295 (570)
Q Consensus 287 LiEnLL~tV 295 (570)
||+++|..-
T Consensus 68 ~I~~~i~~~ 76 (82)
T 1wvn_A 68 LINARLSSE 76 (82)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhh
Confidence 999998643
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.47 E-value=9e-08 Score=77.51 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=55.9
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|... . +....-.|.|+|. ++++++|++|
T Consensus 5 ~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~------~~~~~~~v~I~G~-~~~v~~A~~~ 67 (76)
T 2p2r_A 5 TSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANP----V------EGSTDRQVTITGS-AASISLAQYL 67 (76)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCC----C------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCC----C------CCCCeEEEEEEeC-HHHHHHHHHH
Confidence 4567777743 69999999999999999999999999752 1 1123457889986 9999999999
Q ss_pred HHHHHH
Q 008326 288 AENLLD 293 (570)
Q Consensus 288 iEnLL~ 293 (570)
++++|.
T Consensus 68 I~~~i~ 73 (76)
T 2p2r_A 68 INVRLS 73 (76)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999874
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=1.4e-07 Score=78.36 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=58.4
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 288 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~Li 288 (570)
..++.||-+ .+|+|||++|.+++.|+++|||+|.|...+... .....-.|.|+|. ++++++|+++|
T Consensus 4 t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~g~~~r~v~I~G~-~~~v~~A~~~I 69 (87)
T 1ec6_A 4 LVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (87)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------TTSCEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------CCCCceEEEEEcC-HHHHHHHHHHH
Confidence 456677643 689999999999999999999999998642110 0123357888886 99999999999
Q ss_pred HHHHHHHHHH
Q 008326 289 ENLLDTISAE 298 (570)
Q Consensus 289 EnLL~tV~eE 298 (570)
+++|......
T Consensus 70 ~~~i~~~~~~ 79 (87)
T 1ec6_A 70 SQRVTYEQGV 79 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccccc
Confidence 9999875444
No 25
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=1.4e-07 Score=79.08 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=52.1
Q ss_pred cceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 207 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 207 ~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
....+|.||- +++|.|||++|+++|+||++|||+|+|-.++ +|+ .+.|++. ++++++|++
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------------~~~-~v~ItG~-~e~v~~A~~ 68 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------------KEP-VFAVTGM-PENVDRARE 68 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------------SCC-EEEEEEC-TTTHHHHHH
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC------------CCC-eEEEEcC-HHHHHHHHH
Confidence 4556777762 6899999999999999999999999996421 132 3666665 599999999
Q ss_pred HHHHHH
Q 008326 287 LAENLL 292 (570)
Q Consensus 287 LiEnLL 292 (570)
+|++++
T Consensus 69 ~I~~~i 74 (83)
T 2dgr_A 69 EIEAHI 74 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 26
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.43 E-value=1.6e-07 Score=81.35 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=61.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
..+.+.||-+ ++|+|||++|.++|.|+++|||+|.|--.|+ ++-.|.|+|.. +++++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~------------~~~~V~I~G~~-e~v~~A~~~ 77 (104)
T 2ctk_A 17 VTIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL------------QSDIIAITGLA-ANLDRAKAG 77 (104)
T ss_dssp EEEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTT------------TCCEEEEEECH-HHHHHHHHH
T ss_pred EEEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCC------------CcceEEEEcCH-HHHHHHHHH
Confidence 3566777633 6899999999999999999999999965433 12389999985 999999999
Q ss_pred HHHHHHHHHHHhcc
Q 008326 288 AENLLDTISAECGA 301 (570)
Q Consensus 288 iEnLL~tV~eE~~a 301 (570)
|++|+.....+...
T Consensus 78 I~~i~~e~e~~~~d 91 (104)
T 2ctk_A 78 LLERVKELQAEQED 91 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhHHH
Confidence 99999988877643
No 27
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.38 E-value=2.9e-07 Score=74.25 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=53.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
..+.+.||-+ ++|+|||++|.++++|+++|||+|.|--.|. .+-.|.|+|. .+.+++|+++
T Consensus 5 ~~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~------------~~~~V~I~G~-~~~v~~A~~~ 65 (71)
T 1vig_A 5 DYVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE------------KSNLIRIEGD-PQGVQQAKRE 65 (71)
T ss_dssp EEEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS------------SSEEEEEEES-SHHHHHHHHH
T ss_pred EEEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC------------cccEEEEEcC-HHHHHHHHHH
Confidence 3456667633 6899999999999999999999999864321 2247999998 6899999999
Q ss_pred HHHHH
Q 008326 288 AENLL 292 (570)
Q Consensus 288 iEnLL 292 (570)
+++|+
T Consensus 66 I~~i~ 70 (71)
T 1vig_A 66 LLELA 70 (71)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99985
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.33 E-value=3.1e-07 Score=74.36 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=54.5
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|+|. ++++++|+++
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~------------~er~v~I~G~-~~~v~~A~~~ 65 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC------------PERIITLAGP-TNAIFKAFAM 65 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC------------SEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC------------CcEEEEEEeC-HHHHHHHHHH
Confidence 345677763 46999999999999999999999999975321 1235888888 9999999999
Q ss_pred HHHHHH
Q 008326 288 AENLLD 293 (570)
Q Consensus 288 iEnLL~ 293 (570)
++++|.
T Consensus 66 I~~~l~ 71 (73)
T 2axy_A 66 IIDKLE 71 (73)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999885
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.26 E-value=8.2e-07 Score=84.94 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=88.8
Q ss_pred ccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 008326 117 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQGHAGFP 195 (570)
Q Consensus 117 ~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkEiLke~P~~~p 195 (570)
+-+++.+ |++.+.|++.+|+.|..-. .++..- |....+..+. .++.+|...|+.+...-+ +
T Consensus 15 vg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~--i~t~~~t~dp---~~i~KA~dlI~ai~rgf~---~ 76 (191)
T 1tua_A 15 LGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVI--VEPEAEGIPP---VNLMKAAEVVKAISLGFP---P 76 (191)
T ss_dssp HHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEE--EEESSTTSCH---HHHHHHHHHHHHHHHTCC---H
T ss_pred hhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEE--EEeCCCCCCH---HHHHHHHHHHHHHHcCCC---H
Confidence 3445544 8999999999999987753 234343 3311111122 378889999988776521 1
Q ss_pred ccccc-cCCCcccceeEEEecCCCC-CC-----CceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCC
Q 008326 196 TLQTV-MGNGVQAMSTSVFLGFDAD-AS-----LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQP 268 (570)
Q Consensus 196 ~~~~p-~~~G~k~~~eKI~Ipld~~-P~-----FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEP 268 (570)
+-... .+. -..-+.+.|+ .+ .. -..+|||||++|.|++.||+.|||+|.|-|+
T Consensus 77 e~A~~Ll~D--d~~~e~i~i~--~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~---------------- 136 (191)
T 1tua_A 77 EKAFRLLEE--DQILVVVDLK--QVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY---------------- 136 (191)
T ss_dssp HHHGGGGST--TEEEEEEETH--HHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS----------------
T ss_pred HHhhhcccC--cceeEEEEcc--cccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC----------------
Confidence 10000 000 0112223232 11 00 1258999999999999999999999999752
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHHHHH
Q 008326 269 LHLFLSSNNPKSLEEAKRLAENLLDT 294 (570)
Q Consensus 269 LHV~Isa~~~e~l~kAk~LiEnLL~t 294 (570)
.++|.| +++.++.|+..+++||..
T Consensus 137 -~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 -EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp -EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred -EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 577776 789999999999999964
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.12 E-value=9.5e-06 Score=73.45 Aligned_cols=137 Identities=15% Similarity=0.280 Sum_probs=89.3
Q ss_pred EEeEEEcCCCCcccccee-cchhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKL-TKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~L-TKg~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
|+.++.|..=+ +..++ .+|++++.|++++|..|. .| . .++-.| .+.+.+. ..|.++
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~~-~------~~~~~~-i~~~~~p-------~~v~~~--- 60 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---DL-D------EDTCTF-HIYGEDQ-------DAVKKA--- 60 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---EE-E------TTTTEE-EEEESSH-------HHHHHH---
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---cc-C------CCchhe-eeccCCH-------HHHHHH---
Confidence 45566665554 56666 559999999999993332 12 1 123334 4556543 244443
Q ss_pred HHHHHHcCCCCCCccccccCCCcccceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCc-EEEEeecCCCCCCCCC
Q 008326 183 VEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA-TVLLRGRGSGNSEGLQ 261 (570)
Q Consensus 183 IkEiLke~P~~~p~~~~p~~~G~k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGa-KI~IRGRGSg~~E~~~ 261 (570)
+++|.- .+..|.||-+ .+|++||.+|.++|.|++.||| +|.|.+.....
T Consensus 61 -~~~l~~------------------~e~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~----- 110 (144)
T 2qnd_A 61 -RSFLEF------------------AEDVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN----- 110 (144)
T ss_dssp -HHHHCE------------------EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC-----
T ss_pred -HHhhhc------------------ceEEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC-----
Confidence 333321 1256667632 6899999999999999999997 99999853221
Q ss_pred CCCCCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008326 262 GEEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 295 (570)
Q Consensus 262 g~EsdEPL-HV~Isa~~~e~l~kAk~LiEnLL~tV 295 (570)
....+.+ -|.|+| +.+++++|++|++++|+.+
T Consensus 111 -~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 111 -VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp -CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred -ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 1112333 255665 8889999999999999753
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.04 E-value=7.1e-06 Score=73.40 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=54.0
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008326 210 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiE 289 (570)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. .....-.|.|+| +++++++|+.+|.
T Consensus 4 ~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~~r~v~I~G-~~~~v~~A~~~I~ 68 (164)
T 2jvz_A 4 QEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEMVM 68 (164)
T ss_dssp EEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--------SSSSCEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC--------CCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 56677643 59999999999999999999999999532210 112234688888 8899999999999
Q ss_pred HHHHH
Q 008326 290 NLLDT 294 (570)
Q Consensus 290 nLL~t 294 (570)
+++..
T Consensus 69 ~ii~e 73 (164)
T 2jvz_A 69 DILRE 73 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98753
No 32
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.94 E-value=6.5e-06 Score=75.11 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=54.4
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008326 210 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiE 289 (570)
.++.||- +.+|+|||++|.++|+|+++|||+|.|... + .....-.|.|++. .+++++|+++|+
T Consensus 5 ~~~~vp~------~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~-----~~~~~r~v~I~G~-~~~v~~A~~~I~ 67 (174)
T 1j4w_A 5 IDVPIPR------FAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----D-----GTTPERIAQITGP-PDRAQHAAEIIT 67 (174)
T ss_dssp EEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEEECC-----T-----TSCSEEEEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEECh------hheeeeecCCchHHHHHHHHhCCEEEEecC-----C-----CCCCccEEEEEeC-HHHHHHHHHHHH
Confidence 4566663 369999999999999999999999999642 0 0122246778877 899999999999
Q ss_pred HHHHHH
Q 008326 290 NLLDTI 295 (570)
Q Consensus 290 nLL~tV 295 (570)
++|...
T Consensus 68 ~~~~~~ 73 (174)
T 1j4w_A 68 DLLRSV 73 (174)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998765
No 33
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.92 E-value=6.7e-06 Score=70.40 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=55.9
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhh-CcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ET-GaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
.++.|.||-+ +.+.||||+|.+++.|+++| ||+|.|--.|+ ..-.|.|.|.+. .+++|++
T Consensus 17 vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~------------~~~~V~I~G~~~-~v~~A~~ 77 (95)
T 2ctj_A 17 AEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGS------------GSDTVVIRGPSS-DVEKAKK 77 (95)
T ss_dssp CCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTT------------TCCEEEEESCHH-HHHHHHH
T ss_pred EEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCC------------CcceEEEEcCHH-HHHHHHH
Confidence 4566777644 57899999999999999999 99998854332 124799999887 9999999
Q ss_pred HHHHHHHHH
Q 008326 287 LAENLLDTI 295 (570)
Q Consensus 287 LiEnLL~tV 295 (570)
++++|+..+
T Consensus 78 ~I~~iv~e~ 86 (95)
T 2ctj_A 78 QLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999998653
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.81 E-value=6.9e-06 Score=70.67 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcE-EEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaK-I~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
.+.+.|+.+ .+|.+|||+|.++|.|+++|||+ |-|- ++.=.|.|.+.+.+.+++|+++
T Consensus 16 i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------------eddG~V~I~g~~~ea~~~A~~~ 74 (91)
T 2cpq_A 16 HEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELD---------------EDTGTFRIYGESADAVKKARGF 74 (91)
T ss_dssp EEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEE---------------TTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEE---------------cCCCEEEEEECCHHHHHHHHHH
Confidence 455556533 58999999999999999999998 9993 1235799999999999999999
Q ss_pred HHHHH
Q 008326 288 AENLL 292 (570)
Q Consensus 288 iEnLL 292 (570)
++++-
T Consensus 75 I~~ie 79 (91)
T 2cpq_A 75 LEFVE 79 (91)
T ss_dssp HSCCC
T ss_pred HHhhh
Confidence 98764
No 35
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.76 E-value=4.3e-05 Score=69.07 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=57.9
Q ss_pred EEcCCCCc---cccceecchhHHHHHHHHhCCeEeeeccccCCC-C--C------CCCCCCeEEEEecccccchHHHHHH
Q 008326 108 IVINDSES---SVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPN-A--P------PDGEKPLYLHISAGAHVKTAERILA 175 (570)
Q Consensus 108 IEINDlPq---~~Ry~LTKg~Tq~eIqe~TGA~VtTRGrYyPPg-~--~------~~gepPLYL~Ieg~telnT~ERika 175 (570)
|.+.++|. --|.+-.+|.|+++|+++|||.|.+||+..-.. + . ...+.+||++|++.+. ..
T Consensus 13 IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~-------e~ 85 (131)
T 1k1g_A 13 IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM-------EN 85 (131)
T ss_dssp CCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH-------HH
T ss_pred ECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH-------HH
Confidence 44455653 236777999999999999999999998653221 1 1 1235699999999876 68
Q ss_pred HHHHHHHHHHHHHcC
Q 008326 176 VDHAAAMVEEMLKQG 190 (570)
Q Consensus 176 VD~AvskIkEiLke~ 190 (570)
+++|+++|+++|+..
T Consensus 86 ~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 86 VKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999873
No 36
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=5.4e-05 Score=67.67 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=51.5
Q ss_pred cceecchhHHHHHHHHhCCeEeeecccc---CCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHHHHHc
Q 008326 118 RYKLTKRHTQEEIQKCTGAVVITRGKYR---LPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQ 189 (570)
Q Consensus 118 Ry~LTKg~Tq~eIqe~TGA~VtTRGrYy---PPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkEiLke 189 (570)
|.+-.+|.|++.|+++|||.|.+||+-- -+......+.+||++|++.+. ..+++|+.+|++++..
T Consensus 32 ~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~-------e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 32 KVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP-------EGLAAAKKLCENLLQT 99 (119)
T ss_dssp HHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH-------HHHHHHHHHHHHHHHH
T ss_pred eEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH-------HHHHHHHHHHHHHhhc
Confidence 3344779999999999999999998732 222223456799999999887 6899999999999864
No 37
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=2.5e-05 Score=70.03 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=53.9
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..| ...-.|.|+|. .+.+++|+.+
T Consensus 5 ~~~~~~vp~------~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~------------~~~r~v~I~G~-~~~v~~A~~~ 65 (160)
T 2jzx_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGN------------CPERIITLAGP-TNAIFKAFAM 65 (160)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCSEEEEECCT------------TTEEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEcCCC------------CCceEEEEEeC-HHHHHHHHHH
Confidence 345666663 3699999999999999999999999997532 11246778886 8999999999
Q ss_pred HHHHHHH
Q 008326 288 AENLLDT 294 (570)
Q Consensus 288 iEnLL~t 294 (570)
|.+++..
T Consensus 66 I~~~i~e 72 (160)
T 2jzx_A 66 IIDKLEE 72 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888764
No 38
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.67 E-value=2.7e-05 Score=71.12 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=53.1
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
...++.||- +++|.|||++|.++|+|+++|||+|.|...+-.. . ...| =.|.|+|. .+++++|+++
T Consensus 6 ~~~~i~vp~------~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~----~--~~~e-r~v~I~G~-~~~v~~A~~~ 71 (178)
T 2anr_A 6 YFLKVLIPS------YAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY----P--GTTE-RVCLIQGT-IEALNAVHGF 71 (178)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC----T--TSSE-EEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC----C--CCCC-ceEEEEeC-HHHHHHHHHH
Confidence 456677763 3799999999999999999999999996432111 0 1111 24667775 8899999999
Q ss_pred HHHHHH
Q 008326 288 AENLLD 293 (570)
Q Consensus 288 iEnLL~ 293 (570)
+++++.
T Consensus 72 I~~~~~ 77 (178)
T 2anr_A 72 IAEKIR 77 (178)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998874
No 39
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.66 E-value=3.7e-05 Score=69.14 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=53.0
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008326 210 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiE 289 (570)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. ....-.|.|+| +++++.+|+.+|.
T Consensus 5 ~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------~~~~r~v~I~G-~~e~v~~A~~~I~ 68 (163)
T 3krm_A 5 VQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP---------DSKVRMVIITG-PPEAQFKAQGRIY 68 (163)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---------TCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---------CCCceEEEEEc-CHHHHHHHHHHHH
Confidence 45566633 68999999999999999999999999753211 12224577777 8999999999998
Q ss_pred HHHHH
Q 008326 290 NLLDT 294 (570)
Q Consensus 290 nLL~t 294 (570)
+++..
T Consensus 69 ~~~~e 73 (163)
T 3krm_A 69 GKLKE 73 (163)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.36 E-value=0.0001 Score=81.31 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=50.1
Q ss_pred eEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008326 210 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 289 (570)
Q Consensus 210 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiE 289 (570)
+.+-|+.+ .+|.||||+|.++|.|+++|||+|.|- +.=.|.|.+.|.+.+++|+++|+
T Consensus 569 ~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------------d~G~V~I~~~~~~~~~~A~~~I~ 626 (630)
T 3u1k_A 569 ETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQV----------------DEETFSVFAPTPSAMHEARDFIT 626 (630)
T ss_dssp EEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEEC----------------SSSEEEEEESSHHHHHHHHHHTT
T ss_pred EEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEc----------------CCcEEEEEeCCHHHHHHHHHHHH
Confidence 44555533 488999999999999999999999874 12479999999999999999999
Q ss_pred HHHH
Q 008326 290 NLLD 293 (570)
Q Consensus 290 nLL~ 293 (570)
+|+.
T Consensus 627 ~i~~ 630 (630)
T 3u1k_A 627 EICK 630 (630)
T ss_dssp C---
T ss_pred HHhC
Confidence 8863
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.05 E-value=0.0013 Score=56.84 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=56.2
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHh-hCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 286 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~E-TGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~ 286 (570)
.+.+|.||-+ |.+.|||++|+++|+|+.+ ++++|.|=. . .--|.|.|+ .+.|++|+.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~---~~~ItI~G~-~~~V~~a~~ 84 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE------------G---EDKITLEGP-TEDVSVAQE 84 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS------------S---SCEEEEEEC-HHHHHHHHH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC------------C---CCEEEEECC-HHHHHHHHH
Confidence 4566767633 5789999999999999996 688886642 0 126999999 899999999
Q ss_pred HHHHHHHHHHHHh
Q 008326 287 LAENLLDTISAEC 299 (570)
Q Consensus 287 LiEnLL~tV~eE~ 299 (570)
.+++|++...++.
T Consensus 85 ~I~~~v~el~~~~ 97 (102)
T 2ctf_A 85 QIEGMVKDLINRS 97 (102)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 9999999888764
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.70 E-value=0.001 Score=74.50 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=13.8
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008326 224 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTI 295 (570)
Q Consensus 224 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~tV 295 (570)
.++.||||+|.+||.|++||||+|-|. |.-.|.|.+.+.+.+++|+++++.|+...
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~----------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN----------------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp --------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE----------------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 488999999999999999999999754 23568899999999999999999998643
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.60 E-value=0.0016 Score=59.79 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=55.0
Q ss_pred EEcCCCCc---cccceecchhHHHHHHHHhCCeEeeeccccCCCC----C-------CCCCCCeEEEEecccccchHHHH
Q 008326 108 IVINDSES---SVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNA----P-------PDGEKPLYLHISAGAHVKTAERI 173 (570)
Q Consensus 108 IEINDlPq---~~Ry~LTKg~Tq~eIqe~TGA~VtTRGrYyPPg~----~-------~~gepPLYL~Ieg~telnT~ERi 173 (570)
|.++++|. --|.+=.+|.|++.|+++|||.|.+||+---... . ...+.|||++|++.+..+-+.
T Consensus 8 IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~-- 85 (140)
T 2bl5_A 8 VPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAE-- 85 (140)
T ss_dssp CCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHH--
T ss_pred cCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHH--
Confidence 34455552 2244447899999999999999999996422110 0 135789999999976522121
Q ss_pred HHHHHHHHHHHHHHHc
Q 008326 174 LAVDHAAAMVEEMLKQ 189 (570)
Q Consensus 174 kaVD~AvskIkEiLke 189 (570)
..+++|+++|+.+|..
T Consensus 86 ~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 86 LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4689999999998864
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.59 E-value=0.0036 Score=65.47 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=49.4
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCc--hhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 285 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrG--stlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk 285 (570)
+...|-|+-+ +...|||-+| ..|++|+++|||+|.+-..++... .....-.|.|+| ..++|.+|+
T Consensus 186 ~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d------~~~~~~~ItItG-s~e~V~~Ar 252 (376)
T 3n89_A 186 FTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE------TRGNIYEIKVVG-NIDNVLKAR 252 (376)
T ss_dssp EEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC---------------CCEEEEEEES-CHHHHHHHH
T ss_pred eEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc------ccCCceEEEEEe-CHHHHHHHH
Confidence 4445555432 3667999999 556999999999999876544311 112235688888 899999999
Q ss_pred HHHHHHH
Q 008326 286 RLAENLL 292 (570)
Q Consensus 286 ~LiEnLL 292 (570)
+.+++||
T Consensus 253 k~I~~lL 259 (376)
T 3n89_A 253 RYIMDLL 259 (376)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 9999987
No 45
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.39 E-value=0.0026 Score=61.79 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=51.9
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCC----HHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN----PKSLEEA 284 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~----~e~l~kA 284 (570)
..+|.||-+ -+|.|||++|.+++.|+++|||+|.|--. .=.|.|.+.+ ++.+++|
T Consensus 35 i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~---------------~g~V~I~~~~~t~d~~~i~kA 93 (219)
T 2e3u_A 35 EEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSE---------------TGEVWITSTKETEDPLAVWKA 93 (219)
T ss_dssp EEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTT---------------TCEEEEEECTTCCSHHHHHHH
T ss_pred EEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcC---------------CCEEEEecCCCCCCHHHHHHH
Confidence 356777743 58999999999999999999999999521 1247788776 9999999
Q ss_pred HHHHHHHH
Q 008326 285 KRLAENLL 292 (570)
Q Consensus 285 k~LiEnLL 292 (570)
+++|+.|.
T Consensus 94 ~~~I~~i~ 101 (219)
T 2e3u_A 94 RDIVLAIG 101 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999997
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.97 E-value=0.0039 Score=56.31 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=47.0
Q ss_pred ceeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008326 208 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 287 (570)
Q Consensus 208 ~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~L 287 (570)
+++++.||-+ ++|.+||++|++++.|++|+| |.|-- .+++|--+.+.+.+++.+.+|+.+
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~------------~~~~~~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAID------------LDEDTCTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEE------------EETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEec------------cCCCchheeeccCCHHHHHHHHHh
Confidence 4567777644 699999999999999999999 44321 123455688889999999999875
Q ss_pred H
Q 008326 288 A 288 (570)
Q Consensus 288 i 288 (570)
+
T Consensus 64 l 64 (144)
T 2qnd_A 64 L 64 (144)
T ss_dssp H
T ss_pred h
Confidence 4
No 47
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.54 E-value=0.0057 Score=64.02 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=52.9
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCc--hhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHH
Q 008326 206 QAMSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEE 283 (570)
Q Consensus 206 k~~~eKI~Ipld~~P~FNfvgrIIGPrG--stlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~k 283 (570)
...+.++.|+- .|...|||.+| ++|++|++||||+|.+=-++..... . ...---|.|+| ..++|++
T Consensus 28 ~~VTl~v~Ip~------~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~---~--~~ks~~VtItG-~~enVE~ 95 (376)
T 3n89_A 28 TRVTLNMEFES------QYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTT---P--DPFAQQVTITG-YFGDVDR 95 (376)
T ss_dssp TEEEEEEECCG------GGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSS---C--CTTTTEEEEEE-EHHHHHH
T ss_pred CEEEEEEEEch------hhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccC---C--cCCCCeEEEEc-CHHHHHH
Confidence 45667777763 36788999999 9999999999999999543311100 0 01112466666 5779999
Q ss_pred HHHHHHHHH
Q 008326 284 AKRLAENLL 292 (570)
Q Consensus 284 Ak~LiEnLL 292 (570)
||+.+.+|+
T Consensus 96 AR~~I~~l~ 104 (376)
T 3n89_A 96 ARMLMRRNC 104 (376)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcC
Confidence 999999863
No 48
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=94.68 E-value=0.13 Score=42.16 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=49.5
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMV 183 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskI 183 (570)
..+|.|..- .++.++-+ |+|+++|+++|||.|.+...-.+ ....++. +.|.| +. ..+++|+.+|
T Consensus 15 ~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~--v~I~G-~~-------~~v~~A~~~I 79 (85)
T 2opv_A 15 VQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKP--LRIIG-DP-------YKVQQACEMV 79 (85)
T ss_dssp EEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEE--EEEEE-CH-------HHHHHHHHHH
T ss_pred EEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceE--EEEEe-CH-------HHHHHHHHHH
Confidence 457777653 57777755 99999999999999987541111 1223444 46788 44 5899999999
Q ss_pred HHHHHc
Q 008326 184 EEMLKQ 189 (570)
Q Consensus 184 kEiLke 189 (570)
++++++
T Consensus 80 ~~i~~e 85 (85)
T 2opv_A 80 MDILRE 85 (85)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 998763
No 49
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=94.39 E-value=0.14 Score=41.83 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=50.7
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+... .++...-.+.|.|.. +.+++|..+
T Consensus 7 ~~~~i~Vp~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~--------~~v~~A~~~ 69 (82)
T 1zzk_A 7 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ--------DQIQNAQYL 69 (82)
T ss_dssp EEEEEEEETT--TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECH--------HHHHHHHHH
T ss_pred EEEEEEEChH--hcCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCH--------HHHHHHHHH
Confidence 4556777554 47787765 89999999999999987531 112222456788853 589999999
Q ss_pred HHHHHHcC
Q 008326 183 VEEMLKQG 190 (570)
Q Consensus 183 IkEiLke~ 190 (570)
|++++++.
T Consensus 70 I~~~i~~~ 77 (82)
T 1zzk_A 70 LQNSVKQY 77 (82)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998763
No 50
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=93.70 E-value=0.086 Score=45.41 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=49.8
Q ss_pred EEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHH
Q 008326 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkE 185 (570)
+|.|..- .++.++-| |+++++|+++|||.|.+...-.+ ..+..--.+.|.|. . +.+++|+.+|++
T Consensus 10 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~-~-------e~v~~A~~~I~~ 75 (107)
T 2hh2_A 10 TFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGS-P-------QQIDHAKQLIEE 75 (107)
T ss_dssp EEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESC-H-------HHHHHHHHHHHH
T ss_pred EEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECC-H-------HHHHHHHHHHHH
Confidence 5555443 46777765 89999999999999988542211 11222345678884 3 589999999999
Q ss_pred HHHcCC
Q 008326 186 MLKQGH 191 (570)
Q Consensus 186 iLke~P 191 (570)
++.+..
T Consensus 76 ~i~e~~ 81 (107)
T 2hh2_A 76 KIEGPL 81 (107)
T ss_dssp HSCSCC
T ss_pred HHhccc
Confidence 988764
No 51
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.59 E-value=0.11 Score=43.69 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=50.6
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|..- .++.++-| |+++++|+++|||.|.+...-.+ ....++ .+.|.|.. ..+++|+.+
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r--~v~I~G~~--------~~v~~A~~~ 79 (94)
T 1x4m_A 15 AVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADK--PLRITGDP--------YKVQQAKEM 79 (94)
T ss_dssp EEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCE--EEEEEECT--------TTHHHHHHH
T ss_pred EEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCce--EEEEEeCH--------HHHHHHHHH
Confidence 4567877654 46777755 99999999999999977431110 112344 45678844 479999999
Q ss_pred HHHHHHcC
Q 008326 183 VEEMLKQG 190 (570)
Q Consensus 183 IkEiLke~ 190 (570)
|++++++.
T Consensus 80 I~~~i~~~ 87 (94)
T 1x4m_A 80 VLELIRDQ 87 (94)
T ss_dssp HHHHHCCC
T ss_pred HHHHHhcc
Confidence 99999764
No 52
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=93.43 E-value=0.24 Score=42.26 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=52.6
Q ss_pred CceeEEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHH
Q 008326 100 DELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDH 178 (570)
Q Consensus 100 de~~f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~ 178 (570)
+......+|.|..- .++.++-+ |.++++|+++|||.|.+...-- + ....+ -.+.|.|..+ .+++
T Consensus 11 ~~ap~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~-~~~~~--~~V~I~G~~~--------~v~~ 75 (104)
T 1we8_A 11 ENTPVFEQLSVPQR--SVGRIIGRGGETIRSICKASGAKITCDKESE--G-TLLLS--RLIKISGTQK--------EVAA 75 (104)
T ss_dssp SSCEEEEEEEEETT--THHHHHTTTSHHHHHHHHHHCCEEEECCSSC--C-SSSSE--EEEEEEEEHH--------HHHH
T ss_pred CCCCEEEEEEEChh--heeeeECCCCHHHHHHHHHHCCEEEEecCCC--C-CCCCc--ceEEEEcCHH--------HHHH
Confidence 34445667777544 46777765 9999999999999998743210 0 01123 3457788653 6899
Q ss_pred HHHHHHHHHHcCC
Q 008326 179 AAAMVEEMLKQGH 191 (570)
Q Consensus 179 AvskIkEiLke~P 191 (570)
|+.+|.+++.+.+
T Consensus 76 A~~~I~~~i~e~~ 88 (104)
T 1we8_A 76 AKHLILEKVSEDE 88 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCh
Confidence 9999999997653
No 53
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=93.39 E-value=0.11 Score=42.36 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=48.5
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMV 183 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskI 183 (570)
..+|.|..- .++.++-+ |+++++|+++|||.|.+... .++..--.+.|.|.. ..+++|+.+|
T Consensus 7 ~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~--------~~v~~A~~~I 69 (82)
T 1wvn_A 7 THELTIPNN--LIGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSA--------ASISLAQYLI 69 (82)
T ss_dssp EEEEEEEGG--GHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH--------HHHHHHHHHH
T ss_pred EEEEEEchH--hccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCH--------HHHHHHHHHH
Confidence 456666544 46777755 89999999999999987542 112223345778865 4899999999
Q ss_pred HHHHHcC
Q 008326 184 EEMLKQG 190 (570)
Q Consensus 184 kEiLke~ 190 (570)
.+++.++
T Consensus 70 ~~~i~~~ 76 (82)
T 1wvn_A 70 NARLSSE 76 (82)
T ss_dssp HHHTC--
T ss_pred HHHHHhh
Confidence 9998765
No 54
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.11 E-value=0.025 Score=63.36 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008326 224 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 293 (570)
Q Consensus 224 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~ 293 (570)
.++.+|||+|.+++.|..+||++|-|... -.++|++.+.+.+++|+++++.|+.
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~d----------------g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDD----------------GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCC----------------ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999977753 2477888888899999999888864
No 55
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.07 E-value=0.15 Score=47.10 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhc
Q 008326 221 SLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECG 300 (570)
Q Consensus 221 ~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL~tV~eE~~ 300 (570)
+-.+++.|+||+|+.|++||..|++.|+|.=-. +..---|.|-|.... =.+|+.++++|.+--++..-
T Consensus 63 E~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~-----------s~g~tEVtIfG~~~~-Q~rak~MI~sLA~~hr~~~~ 130 (140)
T 3v69_A 63 EPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG-----------PERRAEIWIFGPPPF-RRDVDRMLTDLAHYCRMKLM 130 (140)
T ss_dssp CGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC-----------TTSCEEEEEESCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhcccCCCcCccchHHhhcceeEEEeccC-----------CCCcEEEEEECCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999998321 112255777775444 45688999999887777653
No 56
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=92.80 E-value=0.17 Score=43.90 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=48.2
Q ss_pred EEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHH
Q 008326 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkE 185 (570)
+|.|..- .++.++-| |+++++|+++|||.|.+... . +...-..+.|+|.. +.+++|+.+|++
T Consensus 14 ~i~Ip~~--~iG~IIGkgG~~Ik~I~~~TGakI~I~~~-----~--~~~~er~V~I~G~~--------e~v~~A~~~I~~ 76 (106)
T 2hh3_A 14 DVPVPRH--SVGVVIGRSGEMIKKIQNDAGVRIQFKQD-----D--GTGPEKIAHIMGPP--------DRCEHAARIIND 76 (106)
T ss_dssp EEEEETT--THHHHHTTTTHHHHHHHHHHTCEEEECSS-----C--SSSSEEEEEEESSH--------HHHHHHHHHHHH
T ss_pred EEEECHH--HcCccCCCCcHHHHHHHHHHCcEEEEecC-----C--CCCceeEEEEEeCH--------HHHHHHHHHHHH
Confidence 5666543 36777755 99999999999999987431 1 11222346788863 489999999999
Q ss_pred HHHcC
Q 008326 186 MLKQG 190 (570)
Q Consensus 186 iLke~ 190 (570)
++.+.
T Consensus 77 ii~~~ 81 (106)
T 2hh3_A 77 LLQSL 81 (106)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 99875
No 57
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=92.71 E-value=0.25 Score=41.45 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=51.1
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|..- ..|+++-+ |.++++|+++|||.|.+ ++.. +.+ -.+.|.|. . ..+++|+.+
T Consensus 17 ~t~~i~Ip~~--~ig~IIG~gG~~Ik~I~~etg~~I~i-----~~~~--~~~--~~V~I~G~-~-------e~v~~A~~~ 77 (94)
T 2cte_A 17 ASATVAIPKE--HHRFVIGKNGEKLQDLELKTATKIQI-----PRPD--DPS--NQIKITGT-K-------EGIEKARHE 77 (94)
T ss_dssp EEEEEECCTT--THHHHHCSSSCHHHHHHHHTTCCCBC-----CCTT--SSC--CEEEEEEC-H-------HHHHHHHHH
T ss_pred eEEEEEEChH--HeeeeECCCChhHHHHHHHHCCEEEe-----CCCC--CCC--CeEEEEEC-H-------HHHHHHHHH
Confidence 4678888765 57888877 79999999999999865 2211 012 25678887 3 589999999
Q ss_pred HHHHHHcC
Q 008326 183 VEEMLKQG 190 (570)
Q Consensus 183 IkEiLke~ 190 (570)
|.+++.+.
T Consensus 78 I~~i~~~~ 85 (94)
T 2cte_A 78 VLLISAEQ 85 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
Confidence 99998764
No 58
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.66 E-value=0.19 Score=41.87 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=50.7
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|.+ ..+++++-| |+|+++|+++|||.|.+-. . +.+ +. +.|+|..+ .+++|..+
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~---~~~-~~-v~ItG~~e--------~v~~A~~~ 69 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R---DKE-PV-FAVTGMPE--------NVDRAREE 69 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S---SSC-CE-EEEEECTT--------THHHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C---CCC-Ce-EEEEcCHH--------HHHHHHHH
Confidence 356788876 468898866 9999999999999997632 1 123 33 67888765 79999999
Q ss_pred HHHHHHcC
Q 008326 183 VEEMLKQG 190 (570)
Q Consensus 183 IkEiLke~ 190 (570)
|.+++...
T Consensus 70 I~~~i~~r 77 (83)
T 2dgr_A 70 IEAHITLR 77 (83)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcc
Confidence 99987653
No 59
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=92.54 E-value=0.25 Score=39.58 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=49.0
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMV 183 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskI 183 (570)
..+|.|..- .++.++-+ |.++++|+++|||.|.+... .++..--.+.|.|.. ..+++|..+|
T Consensus 6 ~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~--------~~v~~A~~~I 68 (76)
T 2p2r_A 6 SHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP-------VEGSTDRQVTITGSA--------ASISLAQYLI 68 (76)
T ss_dssp EEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH--------HHHHHHHHHH
T ss_pred EEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC-------CCCCCeEEEEEEeCH--------HHHHHHHHHH
Confidence 445555443 46677755 89999999999999988641 112223355788863 5899999999
Q ss_pred HHHHHcC
Q 008326 184 EEMLKQG 190 (570)
Q Consensus 184 kEiLke~ 190 (570)
.+++.++
T Consensus 69 ~~~i~~E 75 (76)
T 2p2r_A 69 NVRLSSE 75 (76)
T ss_dssp HHHHTTC
T ss_pred HHHHHcc
Confidence 9998764
No 60
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=92.51 E-value=0.26 Score=41.13 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=51.4
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+...- ++..--.+.|.|.. +.+++|+.+
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~--------e~v~~A~~~ 77 (92)
T 1x4n_A 15 MTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP--------ESVQSAKRL 77 (92)
T ss_dssp EEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH--------HHHHHHHHH
T ss_pred EEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH--------HHHHHHHHH
Confidence 4556766543 46777755 999999999999999875421 12233456788863 589999999
Q ss_pred HHHHHHcCC
Q 008326 183 VEEMLKQGH 191 (570)
Q Consensus 183 IkEiLke~P 191 (570)
|++++.+..
T Consensus 78 I~~~i~~~~ 86 (92)
T 1x4n_A 78 LDQIVEKGR 86 (92)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 999998753
No 61
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=92.41 E-value=0.19 Score=39.98 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=46.9
Q ss_pred EEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHH
Q 008326 107 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkE 185 (570)
+|.|..- .++.++-+ |.++++|++.|||.|.+... +...++..--.+.|.|.. ..+++|..+|.+
T Consensus 6 ~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~--------~~v~~A~~~I~~ 71 (76)
T 1dtj_A 6 EMAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP--------AATQAAQYLISQ 71 (76)
T ss_dssp EEEEETT--THHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH--------HHHHHHHHHHHH
T ss_pred EEEEChH--HcceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH--------HHHHHHHHHHHH
Confidence 4555443 35666655 89999999999999987431 111123334456788864 489999999999
Q ss_pred HHHc
Q 008326 186 MLKQ 189 (570)
Q Consensus 186 iLke 189 (570)
++.+
T Consensus 72 ~i~e 75 (76)
T 1dtj_A 72 RVTY 75 (76)
T ss_dssp HCC-
T ss_pred HHhc
Confidence 8764
No 62
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=91.77 E-value=0.33 Score=39.85 Aligned_cols=63 Identities=22% Similarity=0.165 Sum_probs=44.5
Q ss_pred cccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHHHHHcC
Q 008326 116 SVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEEMLKQG 190 (570)
Q Consensus 116 ~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkEiLke~ 190 (570)
.++.++-+ |.++++|+++|||.|.+... +...++..--.+.|.|.. ..++.|..+|.+++.+.
T Consensus 13 ~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~g~~~r~v~I~G~~--------~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 13 LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP--------AATQAAQYLISQRVTYE 76 (87)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEECCT----TCBSTTSCEEEEEEESSH--------HHHHHHHHHHHHHHHHH
T ss_pred HcCeeECCCcHhHHHHHHHhCCEEEEccC----CCCCCCCCceEEEEEcCH--------HHHHHHHHHHHHHHhcc
Confidence 35666655 89999999999999977431 111123333456788863 48999999999998763
No 63
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=91.67 E-value=0.31 Score=40.38 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=49.7
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|..- .++.++-+ |.++++|+++|||.|.+... . ++..--.+.|.|.. +.+++|+.+
T Consensus 14 ~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-~------~~~~~~~v~I~G~~--------e~v~~A~~~ 76 (89)
T 1j5k_A 14 ITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-L------EGSEDRIITITGTQ--------DQIQNAQYL 76 (89)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-C------SSSSEEEEEEEEEH--------HHHHHHHHH
T ss_pred EEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-C------CCCCccEEEEEcCH--------HHHHHHHHH
Confidence 4566766543 46777755 99999999999999987531 1 12222345788863 489999999
Q ss_pred HHHHHHcC
Q 008326 183 VEEMLKQG 190 (570)
Q Consensus 183 IkEiLke~ 190 (570)
|++++++.
T Consensus 77 I~~~i~e~ 84 (89)
T 1j5k_A 77 LQNSVKQY 84 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998864
No 64
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=91.12 E-value=0.31 Score=38.95 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=47.8
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMV 183 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskI 183 (570)
..+|.|+.- ..|.++-+ |.++++|+++|||.|.. ++. ++..-.+.|.|.. +.+++|+.+|
T Consensus 6 ~~~i~I~~~--~ig~iIG~gG~~I~~I~e~tg~~I~i-----~~~----g~~~~~V~I~G~~--------~~v~~A~~~I 66 (71)
T 1vig_A 6 YVEINIDHK--FHRHLIGKSGANINRIKDQYKVSVRI-----PPD----SEKSNLIRIEGDP--------QGVQQAKREL 66 (71)
T ss_dssp EEEEEECSS--HHHHHTCSSCCHHHHHHHHTCCEEEC-----CCC----CSSSEEEEEEESS--------HHHHHHHHHH
T ss_pred EEEEEECHH--HhhhhcCCCCccHHHHHHHHCCEEEE-----CCC----CCcccEEEEEcCH--------HHHHHHHHHH
Confidence 557778765 57888855 99999999999999954 321 2233466888974 4899999999
Q ss_pred HHHH
Q 008326 184 EEML 187 (570)
Q Consensus 184 kEiL 187 (570)
.+++
T Consensus 67 ~~i~ 70 (71)
T 1vig_A 67 LELA 70 (71)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8863
No 65
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=91.01 E-value=0.44 Score=38.16 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=46.4
Q ss_pred eEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHH
Q 008326 106 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVE 184 (570)
Q Consensus 106 aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIk 184 (570)
-++.|..- .++.++-+ |.++++|+++|||.|.+-.. +..--.+.|.|.. ..+++|+.+|.
T Consensus 7 ~~i~ip~~--~ig~iIGkgG~~Ik~I~~~tga~I~i~~~---------~~~er~v~I~G~~--------~~v~~A~~~I~ 67 (73)
T 2axy_A 7 IRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT--------NAIFKAFAMII 67 (73)
T ss_dssp EEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECSS---------CCSEEEEEEEECH--------HHHHHHHHHHH
T ss_pred EEEEEChh--HeeeEECCCCHHHHHHHHHHCCEEEEecC---------CCCcEEEEEEeCH--------HHHHHHHHHHH
Confidence 34555432 46667755 89999999999999977431 1122345778873 58999999999
Q ss_pred HHHHcC
Q 008326 185 EMLKQG 190 (570)
Q Consensus 185 EiLke~ 190 (570)
++|.++
T Consensus 68 ~~l~ed 73 (73)
T 2axy_A 68 DKLEED 73 (73)
T ss_dssp HHHHC-
T ss_pred HHHhcC
Confidence 999864
No 66
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.98 E-value=0.047 Score=61.56 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=20.6
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 008326 224 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 292 (570)
Q Consensus 224 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk~LiEnLL 292 (570)
.+|.+|||+|.++|.|+.+||++|-|-..| .|+|++.+.+.+++|+++++.|.
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG----------------~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDDG----------------TIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -------------CTTCCCCCSCC------------------------CCCBSSHHHHCC---------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCCc----------------eEEEecCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999776432 46677788888888988888876
No 67
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.12 E-value=0.36 Score=46.18 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=51.7
Q ss_pred eeEEEecCCCCCCCceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEE----eCCHHHHHHH
Q 008326 209 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS----SNNPKSLEEA 284 (570)
Q Consensus 209 ~eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Is----a~~~e~l~kA 284 (570)
+.+|.||-+ -+|.|||.+|.+++.|++++||+|.|-.+ + =-+.|. ..|+..+.+|
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~----------~~V~i~t~~~t~dp~~i~KA 63 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTE-----N----------SMVIVEPEAEGIPPVNLMKA 63 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETT-----T----------TEEEEEESSTTSCHHHHHHH
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----C----------CeEEEEeCCCCCCHHHHHHH
Confidence 456777733 48999999999999999999999999642 1 123344 3688999999
Q ss_pred HHHHHHHHHHHHH
Q 008326 285 KRLAENLLDTISA 297 (570)
Q Consensus 285 k~LiEnLL~tV~e 297 (570)
+++|..+...+..
T Consensus 64 ~dlI~ai~rgf~~ 76 (191)
T 1tua_A 64 AEVVKAISLGFPP 76 (191)
T ss_dssp HHHHHHHHHTCCH
T ss_pred HHHHHHHHcCCCH
Confidence 9999887765443
No 68
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=90.04 E-value=0.8 Score=38.83 Aligned_cols=70 Identities=4% Similarity=0.003 Sum_probs=49.6
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
|...|.|..- ..|.++-+ |.++++|+++|||.|.+ ++... ++...-.+.|.|. + +.+++|..+
T Consensus 17 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~etg~~I~i-----~~~g~-~~~~~~~V~I~G~-~-------e~v~~A~~~ 80 (97)
T 2ctl_A 17 FKLSVTVDPK--YHPKIIGRKGAVITQIRLEHDVNIQF-----PDKDD-GNQPQDQITITGY-E-------KNTEAARDA 80 (97)
T ss_dssp CEEEEECCTT--THHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTT-CSSCSSEEEEESC-H-------HHHHHHHHH
T ss_pred eeEEEEECHH--HhhhcCCCCchhHHHHHHHHCCEEEe-----cCCCC-CCCCccEEEEEeC-H-------HHHHHHHHH
Confidence 4567777764 47888866 99999999999999965 22211 1112334578886 3 589999999
Q ss_pred HHHHHHc
Q 008326 183 VEEMLKQ 189 (570)
Q Consensus 183 IkEiLke 189 (570)
|..++++
T Consensus 81 I~~iv~e 87 (97)
T 2ctl_A 81 ILRIVGE 87 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 69
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=89.47 E-value=0.56 Score=40.31 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=49.3
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|+.- ..|.++-+ |.++++|+++|||.|.+ ++. ++..-.+.|.|.. ..+++|+.+
T Consensus 17 ~~~~i~Ip~~--~ig~IIG~gG~~Ir~I~eetg~~I~I-----~~~----g~~~~~V~I~G~~--------e~v~~A~~~ 77 (104)
T 2ctk_A 17 VTIEVEVPFD--LHRYVIGQKGSGIRKMMDEFEVNIHV-----PAP----ELQSDIIAITGLA--------ANLDRAKAG 77 (104)
T ss_dssp EEEEEECCHH--HHHHHHCSSSHHHHHHHHHTCCEEEC-----CCT----TTTCCEEEEEECH--------HHHHHHHHH
T ss_pred EEEEEEEChH--HccceeCCCchHHHHHHHHHCCEEEe-----cCC----CCCcceEEEEcCH--------HHHHHHHHH
Confidence 4667877754 57888866 99999999999999865 221 1122367788864 479999999
Q ss_pred HHHHHHc
Q 008326 183 VEEMLKQ 189 (570)
Q Consensus 183 IkEiLke 189 (570)
|.+++++
T Consensus 78 I~~i~~e 84 (104)
T 2ctk_A 78 LLERVKE 84 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
No 70
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.25 E-value=0.77 Score=38.84 Aligned_cols=68 Identities=6% Similarity=0.070 Sum_probs=49.3
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
+..+|.|+.- ..|.++-+ |.++++|+++|||.|.+ |+.. ....-...|.|.. +.+++|+.+
T Consensus 17 vt~~i~Ip~~--~ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~g---~~~~~~V~I~G~~--------e~v~~A~~~ 78 (95)
T 2ctm_A 17 VSEDVPLDHR--VHARIIGARGKAIRKIMDEFKVDIRF-----PQSG---APDPNCVTVTGLP--------ENVEEAIDH 78 (95)
T ss_dssp CCEEEECCTT--THHHHHCSSSCHHHHHHHHHTCEEEC-----CCTT---CSCTTEEEEESCH--------HHHHHHHHH
T ss_pred EEEEEEECHH--HccccCCCCcchHHHHHHHHCCeEEe-----cCCC---CCCCcEEEEEcCH--------HHHHHHHHH
Confidence 3567888765 47887755 99999999999999976 2210 1123345778864 479999999
Q ss_pred HHHHHHc
Q 008326 183 VEEMLKQ 189 (570)
Q Consensus 183 IkEiLke 189 (570)
|..++++
T Consensus 79 I~~i~~e 85 (95)
T 2ctm_A 79 ILNLEEE 85 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 71
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=86.11 E-value=0.51 Score=42.84 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=40.7
Q ss_pred CCCCCCCCeEEEEecccccchHH---HHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 008326 149 APPDGEKPLYLHISAGAHVKTAE---RILAVDHAAAMVEEMLKQGHAGFPTLQT 199 (570)
Q Consensus 149 ~~~~gepPLYL~Ieg~telnT~E---RikaVD~AvskIkEiLke~P~~~p~~~~ 199 (570)
..+++.+|.|... +.++||+| |.++.++...+|.++|+..++|.++.++
T Consensus 70 ~RSPSPpP~Yd~~--G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 70 DRSPSPEPIYNSE--GKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp SSCCCCCCCBCTT--SCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred cCCCCCCCccCcc--ccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 4788999999953 44678998 6788999999999999999999987654
No 72
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=80.03 E-value=3.1 Score=35.27 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=48.4
Q ss_pred EeEEEcCCCCccccceecc-hhHHHHHHHHh-CCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHH
Q 008326 105 AREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAM 182 (570)
Q Consensus 105 ~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~T-GA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avsk 182 (570)
...|.|+-- ..|+++-+ |.++++|+++| |+.|.. |.. +...-...|.|.. +.|++|+.+
T Consensus 18 t~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~~----g~~~~~V~I~G~~--------~~v~~A~~~ 78 (95)
T 2ctj_A 18 EVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PVE----GSGSDTVVIRGPS--------SDVEKAKKQ 78 (95)
T ss_dssp CEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CCT----TTTCCEEEEESCH--------HHHHHHHHH
T ss_pred EEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CCC----CCCcceEEEEcCH--------HHHHHHHHH
Confidence 456777644 46888865 79999999999 999844 332 2233356788875 389999999
Q ss_pred HHHHHHc
Q 008326 183 VEEMLKQ 189 (570)
Q Consensus 183 IkEiLke 189 (570)
|++++.+
T Consensus 79 I~~iv~e 85 (95)
T 2ctj_A 79 LLHLAEE 85 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999875
No 73
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=66.53 E-value=10 Score=32.42 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=48.0
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHH-hCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAA 181 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~-TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avs 181 (570)
++.+|+|.-- -.|+++-+ |+++++|.++ +++.| .+|. ++. ...|+|.. ..|++|..
T Consensus 27 ~t~~i~vp~~--~h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~-----~~~--~ItI~G~~--------~~V~~a~~ 84 (102)
T 2ctf_A 27 TVSSVAAPSW--LHRFIIGKKGQNLAKITQQMPKVHI-----EFTE-----GED--KITLEGPT--------EDVSVAQE 84 (102)
T ss_dssp EEEEEECCST--THHHHHTTTTCHHHHHHHHCSSSEE-----EECS-----SSC--EEEEEECH--------HHHHHHHH
T ss_pred EEEEEEeCHH--HHhhhcCCCCccHHHHHHHcCCcEE-----EeCC-----CCC--EEEEECCH--------HHHHHHHH
Confidence 4677888744 47888855 9999999996 57766 3554 222 57889985 48999999
Q ss_pred HHHHHHHc
Q 008326 182 MVEEMLKQ 189 (570)
Q Consensus 182 kIkEiLke 189 (570)
+|+.++++
T Consensus 85 ~I~~~v~e 92 (102)
T 2ctf_A 85 QIEGMVKD 92 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 74
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=50.36 E-value=9.2 Score=32.74 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=44.8
Q ss_pred EEeEEEcCCCCccccceecc-hhHHHHHHHHhCCe-EeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHH
Q 008326 104 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAA 181 (570)
Q Consensus 104 f~aEIEINDlPq~~Ry~LTK-g~Tq~eIqe~TGA~-VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~Avs 181 (570)
|..+|.|+-= ..|..+-+ |.++++|+++||+. |.+-- ++. .+.|.|.++ .++++|+.
T Consensus 15 ~i~~i~I~~d--kIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~-------ea~~~A~~ 73 (91)
T 2cpq_A 15 FHEEFVVRED--LMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA-------DAVKKARG 73 (91)
T ss_dssp EEEEEECCHH--HHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH-------HHHHHHHH
T ss_pred eEEEEEEChH--HhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH-------HHHHHHHH
Confidence 5667777733 46887855 99999999999997 87731 112 346788766 68899988
Q ss_pred HHHHH
Q 008326 182 MVEEM 186 (570)
Q Consensus 182 kIkEi 186 (570)
+|+.+
T Consensus 74 ~I~~i 78 (91)
T 2cpq_A 74 FLEFV 78 (91)
T ss_dssp HHSCC
T ss_pred HHHhh
Confidence 87664
No 75
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=43.81 E-value=29 Score=33.44 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=37.3
Q ss_pred eeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008326 224 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 285 (570)
Q Consensus 224 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kAk 285 (570)
.+.+++|++|..++.|.+.++|+|.| |+ .-.++|.+.+.+....+.
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~v-G~---------------NG~IWi~~~~~~~~~~~~ 203 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFV-AR---------------NGRIHLECPNEDLEAIAV 203 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEE-ET---------------TTEEEEECSCHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEE-eC---------------CCEEEEecCCHHHHHHHH
Confidence 57899999999999999999999988 43 147999999987655443
No 76
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=35.45 E-value=1.3e+02 Score=25.78 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=32.3
Q ss_pred hhHHHHHHhh-CcEEEEeecCCCCCCCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Q 008326 234 QYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 298 (570)
Q Consensus 234 stlK~Iq~ET-GaKI~IRGRGSg~~E~~~g~EsdEP-LHV~Isa~~~e~l~kAk~LiEnLL~tV~eE 298 (570)
.++.-|+.+. +.+|.||-- | .|| ++|++++.+.+ .|.++++.+.+.|.+.
T Consensus 45 ~~idgl~~~~~~gwvlvRpS--G----------TEP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPS--G----------TEDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECS--S----------SSSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeC--C----------CccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 3455555553 458899963 3 344 89999999875 4555666666655544
No 77
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=33.54 E-value=10 Score=34.76 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=25.3
Q ss_pred eeeEeCCCchhHHHHHHhhCcEEEEee
Q 008326 225 AARIRGPNDQYINHIMNETGATVLLRG 251 (570)
Q Consensus 225 vgrIIGPrGstlK~Iq~ETGaKI~IRG 251 (570)
+|..||++|+.++.|++|.|-||-|--
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEE
Confidence 899999999999999999999997765
No 78
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=33.29 E-value=28 Score=38.60 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=40.1
Q ss_pred EEEcCCCCcccccee-cchhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEecccccchHHHHHHHHHHHHHHHH
Q 008326 107 EIVINDSESSVRYKL-TKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHVKTAERILAVDHAAAMVEE 185 (570)
Q Consensus 107 EIEINDlPq~~Ry~L-TKg~Tq~eIqe~TGA~VtTRGrYyPPg~~~~gepPLYL~Ieg~telnT~ERikaVD~AvskIkE 185 (570)
.|.|+-- +.|-++ ..|.++++|+++||+.|.+-- +- ...|.+.++ .++++|+..|++
T Consensus 570 ~~~I~~~--kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G--~V~I~~~~~-------~~~~~A~~~I~~ 627 (630)
T 3u1k_A 570 TVQVPLS--KRAKFVGPGGYNLKKLQAETGVTISQVD-----------EE--TFSVFAPTP-------SAMHEARDFITE 627 (630)
T ss_dssp EEECCHH--HHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SS--EEEEEESSH-------HHHHHHHHHTTC
T ss_pred EEEeChh--HhheeECCCChhHHHHHHHHCCEEEEcC-----------Cc--EEEEEeCCH-------HHHHHHHHHHHH
Confidence 4455422 345555 559999999999999997631 11 346778765 578999999988
Q ss_pred HHH
Q 008326 186 MLK 188 (570)
Q Consensus 186 iLk 188 (570)
+++
T Consensus 628 i~~ 630 (630)
T 3u1k_A 628 ICK 630 (630)
T ss_dssp ---
T ss_pred HhC
Confidence 753
No 79
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=27.06 E-value=43 Score=32.29 Aligned_cols=40 Identities=13% Similarity=0.318 Sum_probs=32.4
Q ss_pred ceeeeEeCCCchhHHHHHHhhCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCH
Q 008326 223 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNP 278 (570)
Q Consensus 223 NfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~ 278 (570)
+.+.+++|+++..++.|.+.++|.|.| |. + -.++|.+.+.
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~--------N-------G~IWi~~~~~ 184 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ--------N-------GLIWVNGDRR 184 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT--------T-------SEEEEESCHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC--------C-------cEEEEeCCch
Confidence 357789999999999999999999988 31 2 4789997655
No 80
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=25.97 E-value=1.2e+02 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=26.4
Q ss_pred HHHHHhhCcEE--EEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 008326 237 NHIMNETGATV--LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEA 284 (570)
Q Consensus 237 K~Iq~ETGaKI--~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~l~kA 284 (570)
.++.+|....| +|-|.|||. |-+...|+|-+.+++|
T Consensus 63 erl~~efni~v~y~imgsgsgv------------m~i~f~gddlea~eka 100 (170)
T 4hhu_A 63 ERLKAEFNINVQYQIMGSGSGV------------MVIVFEGDDLEALEKA 100 (170)
T ss_dssp HHHHHHHTCEEEEEEECTTCCE------------EEEEEECSCHHHHHHH
T ss_pred HHHHHhcceEEEEEEEeCCceE------------EEEEEecCcHHHHHHH
Confidence 34555666555 788888874 5677888898888887
No 81
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=24.47 E-value=19 Score=35.24 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred ccceeEEEecCCCCCCCceeeeEeCCCchhHHHH--------HHhhCcEEEEe
Q 008326 206 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHI--------MNETGATVLLR 250 (570)
Q Consensus 206 k~~~eKI~Ipld~~P~FNfvgrIIGPrGstlK~I--------q~ETGaKI~IR 250 (570)
......|||.-+. -.+.|||.+|..||+| |+..||||.|.
T Consensus 238 ~~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 238 LVIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 3445556665332 3578999999999987 55678888775
No 82
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=23.70 E-value=42 Score=27.04 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.3
Q ss_pred ccCCCCCcCCChHHHH
Q 008326 398 SGYEGIYPQATPLQQV 413 (570)
Q Consensus 398 ~gy~~iypqatplqqv 413 (570)
-|||+|+|+ |+.-++
T Consensus 43 vGyGdi~P~-t~~~r~ 57 (82)
T 3ldc_A 43 VGYGDYSPH-TPLGMY 57 (82)
T ss_dssp CCCCSSCCC-SHHHHH
T ss_pred cCCCCCCCC-CccHHH
Confidence 599999998 555544
Done!