BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008327
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 103/269 (38%), Gaps = 67/269 (24%)
Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
G+IH +R+L N Y Y++G R N T + F P G D + GD+G
Sbjct: 77 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 129
Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYISQ-------WDQF 349
Q NTT + K V +GD+ YA+ Y + W +F
Sbjct: 130 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 177
Query: 350 TA------------------------QIEPIAS-----TVPYMIAR------YSTDYGMF 374
T + EP VPY ++ YS
Sbjct: 178 TERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASA 237
Query: 375 RFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAE 434
+ + + GT QY +++ L V R + PWLI L H L Y+S + +EG E
Sbjct: 238 HIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHFMEG---E 293
Query: 435 PMGRESLQKLWQKYKVDIAVFGHVHNYER 463
M R + + KYKVD+ GHVH YER
Sbjct: 294 AM-RTKFEAWFVKYKVDVVFAGHVHAYER 321
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 103/269 (38%), Gaps = 67/269 (24%)
Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
G+IH +R+L N Y Y++G R N T + F P G D + GD+G
Sbjct: 85 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 137
Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYISQ-------WDQF 349
Q NTT + K V +GD+ YA+ Y + W +F
Sbjct: 138 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 185
Query: 350 TA------------------------QIEPIAS-----TVPYMIAR------YSTDYGMF 374
T + EP VPY ++ YS
Sbjct: 186 TERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASA 245
Query: 375 RFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAE 434
+ + + GT QY +++ L V R + PWLI L H L Y+S + +EG E
Sbjct: 246 HIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHFMEG---E 301
Query: 435 PMGRESLQKLWQKYKVDIAVFGHVHNYER 463
M R + + KYKVD+ GHVH YER
Sbjct: 302 AM-RTKFEAWFVKYKVDVVFAGHVHAYER 329
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 103/269 (38%), Gaps = 67/269 (24%)
Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
G+IH +R+L N Y Y++G R N T + F P G D + GD+G
Sbjct: 79 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 131
Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYISQ-------WDQF 349
Q NTT + K V +GD+ YA+ Y + W +F
Sbjct: 132 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 179
Query: 350 TA------------------------QIEPIAS-----TVPYMIAR------YSTDYGMF 374
T + EP VPY ++ YS
Sbjct: 180 TERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASA 239
Query: 375 RFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAE 434
+ + + GT QY +++ L V R + PWLI L H L Y+S + +EG E
Sbjct: 240 HIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHFMEG---E 295
Query: 435 PMGRESLQKLWQKYKVDIAVFGHVHNYER 463
M R + + KYKVD+ GHVH YER
Sbjct: 296 AM-RTKFEAWFVKYKVDVVFAGHVHAYER 323
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 157/423 (37%), Gaps = 85/423 (20%)
Query: 167 NAPVYPRLAQGKVWNE-MTVTWTSGYGINEAEPFVEWGPKGGDRTYSPAGTLTFGRGSMC 225
NAP + QG + ++WT+ Y A W + + +T+ +
Sbjct: 23 NAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYT 82
Query: 226 GAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDS 285
A +IH +++L + Y Y+LG F ++ F P PG D
Sbjct: 83 SA-----------FIHHCTIKDLEYDTKYYYRLG---FGDA---KRQFWFVTPPKPGPDV 125
Query: 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYIS- 344
+ GD+G+ S T Q+ V +GD+ Y+N + +
Sbjct: 126 PYVFGLIGDIGQ------------THDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNH 173
Query: 345 ---QWDQFTAQIEPIASTVPYMIAR------YSTDYGMFR-------------------- 375
+WD + E + P++ Y+ D G ++
Sbjct: 174 DNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGD 233
Query: 376 ------------FCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSD 423
+ + + + + QY++ L V+R + PWLI L H L Y+S
Sbjct: 234 PLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPL-YNSY 292
Query: 424 LSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNY---ERICPIYQNICTNKEKHYY 480
++ +EG E M R + + YKVDI GHVH+Y ER+ + NI K
Sbjct: 293 EAHYMEG---EAM-RAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAKCTPVS 348
Query: 481 KGSLNGTIHIXXXXXXXSL-SPFTTLQTTWSLYRD--YDHGFVKLTAFDHSNLLFEYKKS 537
S I I L S T Q ++S +R+ + HG + H++ F + ++
Sbjct: 349 DESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFGHGIFDIKNRTHAH--FSWHRN 406
Query: 538 RDG 540
+DG
Sbjct: 407 QDG 409
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 308 NFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIARY 367
N S++ RQ I+ ++D+ H+ ++ + DQ T EP A RY
Sbjct: 213 NIHGPSMDEIRQAIERYASLDVQLHVTELDLS--VFRHEDQRTDLTEPTAEMAELQQKRY 270
Query: 368 STDYGMFR 375
+G+FR
Sbjct: 271 EDIFGLFR 278
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 25/103 (24%)
Query: 248 LWPNAMYTY--KLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNE 305
L PN +Y Y K GH L S + K P PG + Q F +
Sbjct: 82 LEPNKVYYYRFKTGHEL-------SPVGKTKTLPAPGANVPQMTFAFASCQQ-------- 126
Query: 306 YNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYA---NGYISQ 345
++ G + + ++ +D+VFH+GD Y N Y+S+
Sbjct: 127 ---YEHGYYTAYKHMAKE--KLDLVFHLGDYIYEYGPNEYVSK 164
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 397 HCLASVDRQKQPWLIF-LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVF 455
H L + +KQ ++F L YSS + E E + R + + Q YK D VF
Sbjct: 506 HVLKDMPLRKQAEILFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF 565
Query: 456 GHVHNYERI 464
G V+ Y I
Sbjct: 566 GSVYYYNDI 574
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 397 HCLASVDRQKQPWLIF-LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVF 455
H L + +KQ ++F L YSS + E E + R + + Q YK D VF
Sbjct: 503 HVLKDMPLRKQAEILFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF 562
Query: 456 GHVHNYERI 464
G V+ Y I
Sbjct: 563 GSVYYYNDI 571
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,081,643
Number of Sequences: 62578
Number of extensions: 874925
Number of successful extensions: 1670
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 16
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)