Query 008327
Match_columns 570
No_of_seqs 388 out of 2443
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 22:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 1.6E-74 3.5E-79 605.9 36.3 369 166-565 42-452 (452)
2 PLN02533 probable purple acid 100.0 2E-67 4.3E-72 567.4 40.6 344 164-558 39-425 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 7.3E-45 1.6E-49 374.2 27.4 250 285-550 3-294 (294)
4 PTZ00422 glideosome-associated 100.0 1.1E-28 2.3E-33 259.9 26.9 232 285-554 25-333 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 8.6E-28 1.9E-32 245.4 23.1 218 287-540 1-277 (277)
6 cd07395 MPP_CSTP1 Homo sapiens 99.9 1.5E-22 3.3E-27 205.4 22.1 216 285-535 3-260 (262)
7 KOG2679 Purple (tartrate-resis 99.9 1.7E-22 3.6E-27 198.3 17.4 232 283-551 40-330 (336)
8 cd07402 MPP_GpdQ Enterobacter 99.8 2.5E-18 5.5E-23 171.6 20.1 204 288-526 1-237 (240)
9 PF09423 PhoD: PhoD-like phosp 99.8 1.1E-17 2.4E-22 183.0 26.1 268 237-534 60-453 (453)
10 cd07396 MPP_Nbla03831 Homo sap 99.8 2E-17 4.4E-22 168.7 19.2 182 287-498 1-247 (267)
11 COG3540 PhoD Phosphodiesterase 99.7 7.4E-17 1.6E-21 169.8 17.4 203 238-461 98-418 (522)
12 PRK11148 cyclic 3',5'-adenosin 99.7 1.3E-15 2.8E-20 156.1 24.5 217 285-536 13-260 (275)
13 cd07399 MPP_YvnB Bacillus subt 99.7 1.1E-15 2.4E-20 151.1 14.1 159 287-466 1-166 (214)
14 cd07401 MPP_TMEM62_N Homo sapi 99.6 4.3E-15 9.2E-20 150.8 17.1 161 289-467 2-216 (256)
15 PF14008 Metallophos_C: Iron/z 99.6 4.8E-15 1E-19 117.7 6.8 62 485-546 1-62 (62)
16 cd00842 MPP_ASMase acid sphing 99.4 1.6E-12 3.5E-17 134.4 14.1 140 316-464 58-264 (296)
17 PF00149 Metallophos: Calcineu 99.4 1.7E-12 3.8E-17 118.3 11.7 163 287-461 1-200 (200)
18 TIGR03767 P_acnes_RR metalloph 99.4 3E-11 6.5E-16 130.1 19.3 92 367-464 294-395 (496)
19 cd07383 MPP_Dcr2 Saccharomyces 99.4 1.1E-11 2.3E-16 121.0 14.5 164 286-465 2-180 (199)
20 cd08163 MPP_Cdc1 Saccharomyces 99.4 2E-11 4.3E-16 124.1 16.3 134 325-464 44-231 (257)
21 cd07393 MPP_DR1119 Deinococcus 99.3 4.6E-11 1E-15 119.5 16.6 175 289-495 1-226 (232)
22 cd07392 MPP_PAE1087 Pyrobaculu 99.1 3E-09 6.5E-14 101.6 17.4 147 289-462 1-174 (188)
23 TIGR03768 RPA4764 metallophosp 99.1 1.6E-09 3.5E-14 115.9 15.2 93 367-461 295-411 (492)
24 COG1409 Icc Predicted phosphoh 99.0 1.5E-08 3.3E-13 103.2 16.6 160 287-461 1-193 (301)
25 cd07400 MPP_YydB Bacillus subt 98.9 9.7E-09 2.1E-13 94.5 12.7 125 289-464 1-128 (144)
26 cd07388 MPP_Tt1561 Thermus the 98.9 7.4E-08 1.6E-12 95.9 17.1 147 286-459 4-189 (224)
27 TIGR03729 acc_ester putative p 98.9 3.8E-08 8.3E-13 98.8 14.9 158 288-462 1-222 (239)
28 cd07385 MPP_YkuE_C Bacillus su 98.8 7.5E-08 1.6E-12 95.0 14.6 169 287-497 2-206 (223)
29 KOG1432 Predicted DNA repair e 98.7 5.3E-07 1.1E-11 92.7 18.0 178 284-464 51-314 (379)
30 cd07404 MPP_MS158 Microscilla 98.7 9.7E-08 2.1E-12 90.2 10.5 120 325-462 25-150 (166)
31 cd00840 MPP_Mre11_N Mre11 nucl 98.6 3.2E-07 7E-12 90.1 12.0 164 288-463 1-203 (223)
32 PF12850 Metallophos_2: Calcin 98.4 3.1E-06 6.7E-11 78.2 12.7 147 287-524 1-153 (156)
33 cd00838 MPP_superfamily metall 98.4 4.8E-06 1E-10 73.2 12.0 96 324-465 24-119 (131)
34 PRK11340 phosphodiesterase Yae 98.3 2.5E-05 5.4E-10 80.1 16.4 70 285-366 48-119 (271)
35 cd00841 MPP_YfcE Escherichia c 98.2 5.1E-05 1.1E-09 70.6 14.8 153 288-534 1-154 (155)
36 COG2129 Predicted phosphoester 98.1 0.00033 7.2E-09 68.9 19.1 154 286-462 3-188 (226)
37 TIGR00040 yfcE phosphoesterase 98.1 0.00016 3.4E-09 67.8 15.8 155 287-530 1-155 (158)
38 cd07394 MPP_Vps29 Homo sapiens 98.0 0.00051 1.1E-08 66.1 18.2 170 288-541 1-170 (178)
39 cd07379 MPP_239FB Homo sapiens 98.0 7.2E-05 1.6E-09 68.3 11.6 117 288-462 1-117 (135)
40 PF14582 Metallophos_3: Metall 97.8 0.00045 9.7E-09 68.0 13.8 148 287-461 6-218 (255)
41 PRK05340 UDP-2,3-diacylglucosa 97.8 0.00013 2.9E-09 73.3 10.6 159 287-463 1-201 (241)
42 cd07403 MPP_TTHA0053 Thermus t 97.7 0.00028 6.2E-09 64.2 10.8 49 410-464 58-106 (129)
43 cd08166 MPP_Cdc1_like_1 unchar 97.6 0.0002 4.3E-09 69.8 7.5 108 325-464 41-150 (195)
44 cd07397 MPP_DevT Myxococcus xa 97.5 0.0058 1.3E-07 61.5 17.1 37 287-338 1-37 (238)
45 COG1408 Predicted phosphohydro 97.5 0.0016 3.5E-08 67.3 13.0 71 284-366 42-112 (284)
46 COG1768 Predicted phosphohydro 97.4 0.0028 6.2E-08 60.1 12.5 65 406-496 157-221 (230)
47 KOG3770 Acid sphingomyelinase 97.3 0.0018 4E-08 71.6 11.9 136 316-462 200-405 (577)
48 TIGR01854 lipid_A_lpxH UDP-2,3 97.2 0.0092 2E-07 59.7 14.6 44 438-495 174-217 (231)
49 PRK09453 phosphodiesterase; Pr 97.2 0.021 4.5E-07 54.8 16.5 66 447-548 116-181 (182)
50 COG0622 Predicted phosphoester 97.1 0.012 2.7E-07 56.3 14.2 41 409-462 82-122 (172)
51 cd07389 MPP_PhoD Bacillus subt 97.1 0.0033 7.1E-08 62.3 10.4 17 325-341 28-44 (228)
52 cd07384 MPP_Cdc1_like Saccharo 97.0 0.0027 5.9E-08 60.7 8.6 113 315-464 35-149 (171)
53 cd08165 MPP_MPPE1 human MPPE1 97.0 0.011 2.4E-07 55.6 12.0 100 316-464 29-137 (156)
54 TIGR00583 mre11 DNA repair pro 96.9 0.029 6.3E-07 60.9 16.0 52 286-340 3-56 (405)
55 cd07398 MPP_YbbF-LpxH Escheric 96.6 0.012 2.5E-07 57.7 9.5 27 438-464 178-204 (217)
56 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.5 0.054 1.2E-06 55.4 14.1 57 409-467 166-235 (262)
57 cd07410 MPP_CpdB_N Escherichia 96.5 0.26 5.6E-06 50.5 19.3 59 392-462 172-231 (277)
58 cd08164 MPP_Ted1 Saccharomyces 96.5 0.012 2.5E-07 57.4 8.4 110 324-464 42-159 (193)
59 PF00041 fn3: Fibronectin type 96.3 0.0097 2.1E-07 48.5 6.1 74 168-262 2-77 (85)
60 cd07406 MPP_CG11883_N Drosophi 96.3 0.17 3.7E-06 51.5 16.1 48 287-339 1-51 (257)
61 cd07380 MPP_CWF19_N Schizosacc 96.2 0.019 4.1E-07 53.8 7.7 113 315-469 15-130 (150)
62 cd00845 MPP_UshA_N_like Escher 96.1 0.065 1.4E-06 53.9 12.2 47 287-339 1-50 (252)
63 cd07412 MPP_YhcR_N Bacillus su 96.1 0.52 1.1E-05 48.8 18.7 63 393-462 178-242 (288)
64 KOG4221 Receptor mediating net 95.4 0.35 7.6E-06 57.8 15.3 151 109-278 552-711 (1381)
65 cd07425 MPP_Shelphs Shewanella 94.9 0.066 1.4E-06 52.8 6.9 24 440-463 158-181 (208)
66 PF09587 PGA_cap: Bacterial ca 94.8 0.3 6.6E-06 49.3 11.6 64 391-465 169-232 (250)
67 cd07390 MPP_AQ1575 Aquifex aeo 94.4 0.097 2.1E-06 49.6 6.5 23 318-340 34-56 (168)
68 PHA02546 47 endonuclease subun 94.2 0.54 1.2E-05 49.9 12.3 50 287-339 1-52 (340)
69 cd00063 FN3 Fibronectin type 3 94.2 0.45 9.8E-06 37.9 9.2 38 239-276 55-92 (93)
70 KOG0196 Tyrosine kinase, EPH ( 93.9 0.73 1.6E-05 53.2 13.0 95 165-280 439-537 (996)
71 cd07382 MPP_DR1281 Deinococcus 93.8 3.8 8.1E-05 41.8 17.0 76 368-461 101-178 (255)
72 cd07411 MPP_SoxB_N Thermus the 93.8 0.94 2E-05 46.1 12.7 51 391-461 167-219 (264)
73 cd07408 MPP_SA0022_N Staphyloc 93.3 3.6 7.7E-05 41.7 15.9 48 287-339 1-50 (257)
74 PRK04036 DNA polymerase II sma 93.2 1.7 3.8E-05 48.6 14.5 48 285-339 242-297 (504)
75 TIGR00282 metallophosphoestera 93.1 6.5 0.00014 40.4 17.3 99 367-498 101-204 (266)
76 cd07386 MPP_DNA_pol_II_small_a 92.8 1.8 3.9E-05 43.5 12.8 16 449-464 191-206 (243)
77 cd07409 MPP_CD73_N CD73 ecto-5 92.6 3.5 7.5E-05 42.5 14.9 52 391-462 167-219 (281)
78 cd07405 MPP_UshA_N Escherichia 92.1 6.2 0.00014 40.7 16.1 51 405-462 172-222 (285)
79 PRK09419 bifunctional 2',3'-cy 92.1 4.3 9.3E-05 50.3 17.1 46 405-462 837-883 (1163)
80 PRK09558 ushA bifunctional UDP 91.9 4.4 9.6E-05 45.9 15.8 47 405-461 208-257 (551)
81 COG4186 Predicted phosphoester 91.8 4.7 0.0001 38.0 12.9 141 288-460 5-147 (186)
82 KOG3325 Membrane coat complex 91.5 2 4.3E-05 40.0 10.1 86 438-550 96-182 (183)
83 KOG3513 Neural cell adhesion m 91.3 12 0.00026 45.1 18.7 192 49-280 718-916 (1051)
84 PF07888 CALCOCO1: Calcium bin 90.1 2.2 4.7E-05 47.8 10.7 93 64-178 22-124 (546)
85 TIGR00619 sbcd exonuclease Sbc 89.6 0.71 1.5E-05 46.9 6.1 77 287-366 1-82 (253)
86 KOG3662 Cell division control 88.9 1.3 2.8E-05 47.9 7.6 100 284-383 46-182 (410)
87 COG0420 SbcD DNA repair exonuc 87.8 1.2 2.6E-05 48.0 6.8 78 287-366 1-82 (390)
88 smart00060 FN3 Fibronectin typ 87.5 4.3 9.3E-05 30.9 8.2 22 240-261 56-77 (83)
89 cd07387 MPP_PolD2_C PolD2 (DNA 87.3 7.9 0.00017 39.5 11.9 35 367-401 137-176 (257)
90 TIGR01530 nadN NAD pyrophospha 86.7 24 0.00052 40.1 16.6 38 405-462 181-219 (550)
91 COG0737 UshA 5'-nucleotidase/2 86.5 13 0.00028 41.7 14.3 61 390-461 187-247 (517)
92 COG5555 Cytolysin, a secreted 85.4 1.5 3.2E-05 44.9 5.4 96 367-464 228-337 (392)
93 KOG4221 Receptor mediating net 85.1 18 0.00039 44.1 14.6 128 125-279 480-612 (1381)
94 PRK10966 exonuclease subunit S 84.6 2 4.3E-05 46.8 6.4 75 287-366 1-81 (407)
95 smart00854 PGA_cap Bacterial c 83.5 2.5 5.5E-05 42.3 6.3 59 395-464 162-220 (239)
96 cd07381 MPP_CapA CapA and rela 83.2 2.9 6.3E-05 41.8 6.5 61 393-464 162-222 (239)
97 PF10179 DUF2369: Uncharacteri 81.1 23 0.00051 37.0 12.2 92 165-262 171-281 (300)
98 PF13277 YmdB: YmdB-like prote 76.0 67 0.0014 32.8 13.4 98 367-497 98-198 (253)
99 cd07407 MPP_YHR202W_N Saccharo 73.0 16 0.00035 37.7 8.5 55 391-461 175-231 (282)
100 cd07424 MPP_PrpA_PrpB PrpA and 72.0 9 0.0002 37.4 6.2 38 288-340 2-42 (207)
101 COG2908 Uncharacterized protei 69.4 5.8 0.00013 39.8 4.1 41 438-496 176-216 (237)
102 PRK09968 serine/threonine-spec 68.1 13 0.00029 36.7 6.5 38 287-339 15-55 (218)
103 TIGR00024 SbcD_rel_arch putati 67.2 10 0.00022 37.9 5.4 68 287-354 15-86 (225)
104 PRK11439 pphA serine/threonine 66.7 9.4 0.0002 37.7 5.0 38 287-339 17-57 (218)
105 PRK00166 apaH diadenosine tetr 65.3 15 0.00032 37.9 6.3 37 288-339 2-41 (275)
106 COG1311 HYS2 Archaeal DNA poly 64.0 1.3E+02 0.0027 33.6 13.2 46 284-339 223-275 (481)
107 PHA02239 putative protein phos 61.0 26 0.00056 35.3 7.0 39 288-342 2-44 (235)
108 cd07391 MPP_PF1019 Pyrococcus 59.3 19 0.00041 34.0 5.4 16 325-340 40-55 (172)
109 cd07423 MPP_PrpE Bacillus subt 58.2 13 0.00028 37.1 4.3 37 288-339 2-50 (234)
110 PRK13625 bis(5'-nucleosyl)-tet 56.4 29 0.00063 34.9 6.5 39 288-342 2-51 (245)
111 cd07413 MPP_PA3087 Pseudomonas 47.1 28 0.00061 34.5 4.6 38 289-342 1-48 (222)
112 TIGR02855 spore_yabG sporulati 44.3 33 0.00071 35.3 4.6 50 393-460 115-165 (283)
113 KOG2310 DNA repair exonuclease 44.1 46 0.001 37.4 5.9 54 285-341 12-67 (646)
114 PRK09418 bifunctional 2',3'-cy 41.9 50 0.0011 39.2 6.3 47 405-462 243-290 (780)
115 PF09294 Interfer-bind: Interf 40.7 40 0.00087 28.7 4.1 37 241-277 67-105 (106)
116 TIGR00668 apaH bis(5'-nucleosy 39.1 72 0.0016 33.1 6.2 38 288-340 2-42 (279)
117 cd07422 MPP_ApaH Escherichia c 39.0 67 0.0015 32.8 6.0 37 290-342 2-41 (257)
118 PRK09419 bifunctional 2',3'-cy 37.9 50 0.0011 41.1 5.8 48 405-462 233-281 (1163)
119 KOG2863 RNA lariat debranching 36.7 1.7E+02 0.0037 31.5 8.4 24 437-460 206-229 (456)
120 PF05582 Peptidase_U57: YabG p 35.6 52 0.0011 34.0 4.4 50 393-460 116-166 (287)
121 KOG3947 Phosphoesterases [Gene 35.5 5.3E+02 0.012 26.8 12.9 47 285-351 60-106 (305)
122 cd08162 MPP_PhoA_N Synechococc 35.3 48 0.001 34.8 4.4 38 405-461 206-244 (313)
123 cd07421 MPP_Rhilphs Rhilph pho 34.5 94 0.002 32.6 6.2 38 288-341 3-48 (304)
124 cd07420 MPP_RdgC Drosophila me 33.1 61 0.0013 34.3 4.7 24 437-460 252-275 (321)
125 cd00144 MPP_PPP_family phospho 32.7 56 0.0012 31.8 4.2 35 290-339 1-37 (225)
126 cd02856 Glycogen_debranching_e 32.6 59 0.0013 27.9 3.8 23 238-260 44-66 (103)
127 KOG3513 Neural cell adhesion m 32.3 4.2E+02 0.009 32.6 11.7 112 127-261 577-694 (1051)
128 TIGR01390 CycNucDiestase 2',3' 31.8 61 0.0013 37.5 4.8 46 405-461 194-240 (626)
129 PRK11907 bifunctional 2',3'-cy 30.5 75 0.0016 38.0 5.3 62 277-339 106-172 (814)
130 KOG4419 5' nucleotidase [Nucle 28.2 1.1E+02 0.0024 34.9 5.7 55 389-460 211-268 (602)
131 cd02853 MTHase_N_term Maltooli 28.0 77 0.0017 26.1 3.6 20 239-259 40-59 (85)
132 cd02852 Isoamylase_N_term Isoa 27.8 72 0.0016 28.1 3.6 23 238-260 48-70 (119)
133 PTZ00235 DNA polymerase epsilo 27.6 1.2E+02 0.0027 31.6 5.7 91 272-383 16-119 (291)
134 cd02860 Pullulanase_N_term Pul 27.6 77 0.0017 27.0 3.7 23 238-260 46-68 (100)
135 PRK09420 cpdB bifunctional 2', 27.2 94 0.002 36.2 5.3 46 405-461 217-263 (649)
136 cd01987 USP_OKCHK USP domain i 23.3 4.2E+02 0.0092 22.6 7.8 23 438-460 74-96 (124)
137 TIGR02039 CysD sulfate adenyly 22.5 3.1E+02 0.0067 28.7 7.6 81 374-460 50-130 (294)
138 cd07416 MPP_PP2B PP2B, metallo 21.4 1.3E+02 0.0029 31.4 4.7 24 437-460 221-244 (305)
139 PF07353 Uroplakin_II: Uroplak 21.1 1.4E+02 0.003 28.4 4.1 18 244-261 105-122 (184)
140 KOG4258 Insulin/growth factor 20.6 3.6E+02 0.0078 32.3 8.1 116 168-295 488-623 (1025)
141 COG1692 Calcineurin-like phosp 20.6 9.3E+02 0.02 24.7 17.9 167 287-497 1-202 (266)
142 PF04042 DNA_pol_E_B: DNA poly 20.3 4.6E+02 0.01 25.1 8.1 42 289-340 1-45 (209)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-74 Score=605.91 Aligned_cols=369 Identities=41% Similarity=0.702 Sum_probs=308.0
Q ss_pred CCCCccceeecCCCCCeEEEEEEeCCCCCCCccEEEEeecCCCCceecccceEEecccccCCCCccccccCCceEEEEEe
Q 008327 166 PNAPVYPRLAQGKVWNEMTVTWTSGYGINEAEPFVEWGPKGGDRTYSPAGTLTFGRGSMCGAPARTVGWRDPGYIHTGFL 245 (570)
Q Consensus 166 ~~~P~~~~La~~~~~~~m~V~W~T~~~~~~~~~~V~yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~h~a~l 245 (570)
.+.|+|+||++++..++|+|+|.|.+. ....|+||...+......+ ......+|+.... +|+..|++|+|+|
T Consensus 42 ~~~peQvhlS~~~~~~~m~VswvT~~~---~~~~V~Yg~~~~~~~~~~~---~~~~~~~~~~y~~--~~~~sg~ih~~~~ 113 (452)
T KOG1378|consen 42 VNSPEQVHLSFTDNLNEMRVSWVTGDG---EENVVRYGEVKDKLDNSAA---RGMTEAWTDGYAN--GWRDSGYIHDAVM 113 (452)
T ss_pred CCCCCeEEEeccCCCCcEEEEEeCCCC---CCceEEEeecCCCcccccc---ccceEEEeccccc--ccceeeeEeeeee
Confidence 468999999999988899999999974 3489999976554221111 1111123333322 5678999999999
Q ss_pred CCCCCCCEEEEEEeeecCCCcccccceEEEEeCCCCCCCCCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcC
Q 008327 246 RELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLK 325 (570)
Q Consensus 246 ~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p~~g~~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~ 325 (570)
++|+|+|+|+||||++. .||++|+|+|+| +++.+.+|+++||||...... ++.....+..
T Consensus 114 ~~L~~~t~YyY~~Gs~~-----~wS~~f~F~t~p--~~~~~~~~~i~GDlG~~~~~~-------------s~~~~~~~~~ 173 (452)
T KOG1378|consen 114 KNLEPNTRYYYQVGSDL-----KWSEIFSFKTPP--GQDSPTRAAIFGDMGCTEPYT-------------STLRNQEENL 173 (452)
T ss_pred cCCCCCceEEEEeCCCC-----CcccceEeECCC--CccCceeEEEEcccccccccc-------------chHhHHhccc
Confidence 99999999999999862 499999999998 455789999999999876431 2233333334
Q ss_pred CccEEEEcCceeecCCch-hHHHHHHHhhcccccCCCeEEEE----------------------------------EEEE
Q 008327 326 NIDIVFHIGDICYANGYI-SQWDQFTAQIEPIASTVPYMIAR----------------------------------YSTD 370 (570)
Q Consensus 326 ~~Dfvl~~GDi~Y~~g~~-~~wd~f~~~i~~~~s~vP~m~~~----------------------------------YSfd 370 (570)
++|+|||+|||+|++++. .+||+|++++||+++.+|||++. ||||
T Consensus 174 k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~~F~~y~~Rf~mP~~~s~s~~~l~YSfd 253 (452)
T KOG1378|consen 174 KPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQPCFVPYSARFNMPGNSSESDSNLYYSFD 253 (452)
T ss_pred CCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccccccCCCcccccccceeeccCCCcCCCCCceeEEEe
Confidence 799999999999999998 69999999999999999999995 9999
Q ss_pred ECCEEEEEEeCCCCC--CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCc-cccCCCCCcchhHHHHHHHHHH
Q 008327 371 YGMFRFCIADTEQDW--REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLS-YAVEGSFAEPMGRESLQKLWQK 447 (570)
Q Consensus 371 ~G~vhFi~LDTe~~~--~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~-~~~~g~~~~~~~r~~l~~L~~k 447 (570)
+|+||||+|+|+.++ ..+.+|++||++||++++|+++||+||++|+|+ |+++.. +..+|.. +.+ |..||+||.|
T Consensus 254 ~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~-Y~S~~~~~~reG~~-~~~-~~~LE~l~~~ 330 (452)
T KOG1378|consen 254 VGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPM-YCSSNDAHYREGEF-ESM-REGLEPLFVK 330 (452)
T ss_pred eccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccc-eecCCchhhccCcc-hhh-HHHHHHHHHH
Confidence 999999999999986 357899999999999999988999999999999 665542 3445532 345 8899999999
Q ss_pred CCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCC--CCCCCCCCCCcceeeeCCccEEEEEEe
Q 008327 448 YKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGAS--LSPFTTLQTTWSLYRDYDHGFVKLTAF 525 (570)
Q Consensus 448 y~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~--~~~~~~~~~~ws~~~~~~~Gy~~v~~~ 525 (570)
|+||+||+||+|+|||+||++|.+|.+..+..+..++.|||||++|.||+. +..+..++|+||+||..+|||++|+++
T Consensus 331 ~~VDvvf~GHvH~YER~~piyn~~~~~~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~~~~~p~~Sa~R~~dfG~~~L~v~ 410 (452)
T KOG1378|consen 331 YKVDVVFWGHVHRYERFCPIYNNTCGTGWGPVHLVDGMAPIYITVGDGGNHEHLDPFSSPQPEWSAFREGDFGYTRLTAK 410 (452)
T ss_pred hceeEEEeccceehhccchhhcceeeccCCcccccCCCCCEEEEEccCCcccccCcccCCCCcccccccccCCeEEEEEe
Confidence 999999999999999999999999987665555568999999999999965 455656899999999999999999999
Q ss_pred cCCeEEEEEEEC--CCCcEEEEEEEEecCCCcccccCCCCCC
Q 008327 526 DHSNLLFEYKKS--RDGKVYDSFRISRDYRDILACSVDSCPS 565 (570)
Q Consensus 526 n~t~L~~~~~~~--~dG~v~D~f~I~k~~~d~l~~~~~~~~~ 565 (570)
|+||+.++++++ .+|+++|+|||.|++.+...|....|.+
T Consensus 411 N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~~~~~~~~~ 452 (452)
T KOG1378|consen 411 NGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVVGVLLGCIP 452 (452)
T ss_pred cCceEEEEEEeccCCCceEeeeEEEEcccCccccccccccCC
Confidence 999999999985 3378999999999999999999988863
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=2e-67 Score=567.45 Aligned_cols=344 Identities=26% Similarity=0.468 Sum_probs=289.7
Q ss_pred CCCCCCccceeecCCCCCeEEEEEEeCCCCCCCccEEEEeecCCCCceeccc-ceEEecccccCCCCccccccCCceEEE
Q 008327 164 TNPNAPVYPRLAQGKVWNEMTVTWTSGYGINEAEPFVEWGPKGGDRTYSPAG-TLTFGRGSMCGAPARTVGWRDPGYIHT 242 (570)
Q Consensus 164 ~~~~~P~~~~La~~~~~~~m~V~W~T~~~~~~~~~~V~yg~~~~~~~~~~a~-~~ty~~~~mc~~pa~~~g~~~~g~~h~ 242 (570)
+++..|+|+||++++ +++|+|+|.|... ..+.|+||++++....++.+ +.+|... ..| .+|++|+
T Consensus 39 ~~~~~P~qvhls~~~-~~~m~V~W~T~~~---~~~~V~yG~~~~~l~~~a~g~~~~~~~~---------~~~-~~g~iH~ 104 (427)
T PLN02533 39 DDPTHPDQVHISLVG-PDKMRISWITQDS---IPPSVVYGTVSGKYEGSANGTSSSYHYL---------LIY-RSGQIND 104 (427)
T ss_pred CCCCCCceEEEEEcC-CCeEEEEEECCCC---CCCEEEEecCCCCCcceEEEEEEEEecc---------ccc-cCCeEEE
Confidence 578899999999997 8999999999964 45899999987776555544 3456531 123 3799999
Q ss_pred EEeCCCCCCCEEEEEEeeecCCCcccccceEEEEeCCCCCCCCCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHH
Q 008327 243 GFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQ 322 (570)
Q Consensus 243 a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p~~g~~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~ 322 (570)
|+|+||+|||+|+||||.. .+|++++|+|+|.. .++||+++||+|.... ...+++++.+
T Consensus 105 v~l~~L~p~T~Y~Yrvg~~------~~s~~~~F~T~p~~---~~~~f~v~GDlG~~~~------------~~~tl~~i~~ 163 (427)
T PLN02533 105 VVIGPLKPNTVYYYKCGGP------SSTQEFSFRTPPSK---FPIKFAVSGDLGTSEW------------TKSTLEHVSK 163 (427)
T ss_pred EEeCCCCCCCEEEEEECCC------CCccceEEECCCCC---CCeEEEEEEeCCCCcc------------cHHHHHHHHh
Confidence 9999999999999999853 35889999998852 4699999999985421 1245666654
Q ss_pred hcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEE------------------------------------
Q 008327 323 DLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIAR------------------------------------ 366 (570)
Q Consensus 323 ~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~------------------------------------ 366 (570)
.++|||||+||++|++++..+||.|+++++++++.+|+|+++
T Consensus 164 --~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~mP~~~~g~~~~~ 241 (427)
T PLN02533 164 --WDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWRMPFEESGSTSNL 241 (427)
T ss_pred --cCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcccCCccccCCCCCc
Confidence 589999999999999988899999999999999999999876
Q ss_pred -EEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHH
Q 008327 367 -YSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLW 445 (570)
Q Consensus 367 -YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~ 445 (570)
|||++|++|||+||++.++..+++|++||+++|++++|+++||+||++|+|+ |+++..+..+. ....+ |+.|++||
T Consensus 242 yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~-y~s~~~~~~~~-~~~~~-r~~le~Ll 318 (427)
T PLN02533 242 YYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPW-YNSNEAHQGEK-ESVGM-KESMETLL 318 (427)
T ss_pred eEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCe-eecccccCCcc-hhHHH-HHHHHHHH
Confidence 8999999999999999988888999999999999998888999999999999 87764332111 11234 88999999
Q ss_pred HHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCC---CCCCCCCCCcceeeeCCccEEEE
Q 008327 446 QKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASL---SPFTTLQTTWSLYRDYDHGFVKL 522 (570)
Q Consensus 446 ~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~---~~~~~~~~~ws~~~~~~~Gy~~v 522 (570)
++|+|||+|+||+|.|||++|+|++++ .+.||+||++|+||+.. ..+..++|+|+++|..+|||++|
T Consensus 319 ~~~~VdlvlsGH~H~YeR~~p~~~~~~----------~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l 388 (427)
T PLN02533 319 YKARVDLVFAGHVHAYERFDRVYQGKT----------DKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQL 388 (427)
T ss_pred HHhCCcEEEecceecccccccccCCcc----------CCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEE
Confidence 999999999999999999999999876 35799999999999874 34556789999999999999999
Q ss_pred EEecCCeEEEEEEECCCCc--EEEEEEEEecCCCcccc
Q 008327 523 TAFDHSNLLFEYKKSRDGK--VYDSFRISRDYRDILAC 558 (570)
Q Consensus 523 ~~~n~t~L~~~~~~~~dG~--v~D~f~I~k~~~d~l~~ 558 (570)
++.|.|+|+|+|+++.||+ +.|+|||+|-... -+|
T Consensus 389 ~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~-~~~ 425 (427)
T PLN02533 389 NVVDANTMEWTWHRNDDDQSVASDSVWLKSLLTE-PGC 425 (427)
T ss_pred EEEcCCeEEEEEEecCCCCceeeeEEEEEeccCC-Ccc
Confidence 9999999999999977774 8999999987655 445
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=7.3e-45 Score=374.21 Aligned_cols=250 Identities=40% Similarity=0.726 Sum_probs=209.1
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCch--hHHHHHHHhhcccccCCCe
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYI--SQWDQFTAQIEPIASTVPY 362 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~--~~wd~f~~~i~~~~s~vP~ 362 (570)
.++||+++||+|.... .+.+++++++++..+|||||++||++|+++.. .+|+.|++.++++.+.+|+
T Consensus 3 ~~~~f~v~gD~~~~~~-----------~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 71 (294)
T cd00839 3 TPFKFAVFGDMGQNTN-----------NSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPY 71 (294)
T ss_pred CcEEEEEEEECCCCCC-----------CcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCc
Confidence 4699999999997521 23567888877556899999999999988765 7899999999999889999
Q ss_pred EEEE-----------------------------------EEEEECCEEEEEEeCCCCC---CCCHHHHHHHHHHHhcccC
Q 008327 363 MIAR-----------------------------------YSTDYGMFRFCIADTEQDW---REGTEQYRFIEHCLASVDR 404 (570)
Q Consensus 363 m~~~-----------------------------------YSfd~G~vhFi~LDTe~~~---~~g~~Q~~WLe~dL~~~~r 404 (570)
|+++ |+|++|++|||+|||+... ..+.+|++||+++|+++++
T Consensus 72 ~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~ 151 (294)
T cd00839 72 MVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDR 151 (294)
T ss_pred EEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcc
Confidence 8776 8999999999999999765 5678999999999999876
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCC
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSL 484 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~ 484 (570)
.++||+||++|+|+ |++....... ...... ++.|++||++|+|+++|+||+|.|||++|+++++|. .....| .++
T Consensus 152 ~~~~~~iv~~H~P~-~~~~~~~~~~-~~~~~~-~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~-~~~~~~-~~~ 226 (294)
T cd00839 152 SKTPWIIVMGHRPM-YCSNTDHDDC-IEGEKM-RAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV-GDCNPY-SNP 226 (294)
T ss_pred cCCCeEEEEeccCc-EecCcccccc-chhHHH-HHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec-cccccc-cCC
Confidence 67899999999999 7765432211 011233 889999999999999999999999999999999987 222233 468
Q ss_pred CCeEEEEeCCCCCCCCCCCC--CCCCcceeeeCCccEEEEEEecCCeEEEEEEECCCCcEEEEEEEEe
Q 008327 485 NGTIHIAAGGAGASLSPFTT--LQTTWSLYRDYDHGFVKLTAFDHSNLLFEYKKSRDGKVYDSFRISR 550 (570)
Q Consensus 485 ~g~vyIv~G~aG~~~~~~~~--~~~~ws~~~~~~~Gy~~v~~~n~t~L~~~~~~~~dG~v~D~f~I~k 550 (570)
+|++||++|+||+.++.... +.++|++++..++||++|++.++++|+++++.+.+|+|+|+|+|.|
T Consensus 227 ~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v~D~f~i~k 294 (294)
T cd00839 227 KGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVVIDSFWIIK 294 (294)
T ss_pred CccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeEEEEEEEeC
Confidence 99999999999998865432 2358999999999999999988789999999999999999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.97 E-value=1.1e-28 Score=259.90 Aligned_cols=232 Identities=17% Similarity=0.261 Sum_probs=172.0
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCc----hhHHHHHHHhh-cccc--
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGY----ISQWDQFTAQI-EPIA-- 357 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~----~~~wd~f~~~i-~~~~-- 357 (570)
..++|+++||+|.+.. .|....+.+.++.++ .++|||+.+||+. .+|- ..+|+.-|+.+ .+..
T Consensus 25 ~~l~F~~vGDwG~g~~--------~Q~~VA~~M~~~~~~-~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~ 94 (394)
T PTZ00422 25 AQLRFASLGNWGTGSK--------QQKLVASYLKQYAKN-ERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGD 94 (394)
T ss_pred CeEEEEEEecCCCCch--------hHHHHHHHHHHHHHh-CCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchh
Confidence 4589999999996422 133333455555554 6899999999998 5553 45676644443 3333
Q ss_pred cCCCeEEEE-----------------------------------------------EE----EEE-------------CC
Q 008327 358 STVPYMIAR-----------------------------------------------YS----TDY-------------GM 373 (570)
Q Consensus 358 s~vP~m~~~-----------------------------------------------YS----fd~-------------G~ 373 (570)
.++||+++. |. |.. ..
T Consensus 95 L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~ 174 (394)
T PTZ00422 95 MQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMS 174 (394)
T ss_pred hCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCE
Confidence 467877665 22 111 12
Q ss_pred EEEEEEeCCCC-----CC-CCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH
Q 008327 374 FRFCIADTEQD-----WR-EGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK 447 (570)
Q Consensus 374 vhFi~LDTe~~-----~~-~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k 447 (570)
|.||++||... +. ....|++||+++|+.+ ++.++|+||++|||+ ||++.+ +.+ ..+ ++.|+|||++
T Consensus 175 v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPI-ySsG~h-g~~----~~L-~~~L~PLL~k 246 (394)
T PTZ00422 175 VAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPI-YSSGSS-KGD----SYL-SYYLLPLLKD 246 (394)
T ss_pred EEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCce-eecCCC-CCC----HHH-HHHHHHHHHH
Confidence 89999999631 11 2468999999999753 356789999999999 998752 211 234 7899999999
Q ss_pred CCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEecC
Q 008327 448 YKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFDH 527 (570)
Q Consensus 448 y~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n~ 527 (570)
|+||++|+||+|+|||.. .+++.||++|+||...... ....+|+.|....+||+.+++ ++
T Consensus 247 y~VdlYisGHDH~lq~i~------------------~~gt~yIvSGaGs~~~~~~-~~~~~~s~F~~~~~GF~~~~l-~~ 306 (394)
T PTZ00422 247 AQVDLYISGYDRNMEVLT------------------DEGTAHINCGSGGNSGRKS-IMKNSKSLFYSEDIGFCIHEL-NA 306 (394)
T ss_pred cCcCEEEEccccceEEec------------------CCCceEEEeCccccccCCC-CCCCCCcceecCCCCEEEEEE-ec
Confidence 999999999999999973 2578999999998765421 134577888888999999998 89
Q ss_pred CeEEEEEEECCCCcEEEEEEEEecCCC
Q 008327 528 SNLLFEYKKSRDGKVYDSFRISRDYRD 554 (570)
Q Consensus 528 t~L~~~~~~~~dG~v~D~f~I~k~~~d 554 (570)
++|+++|+.+.+|++++++++.|+.|-
T Consensus 307 ~~l~~~fid~~~GkvL~~~~~~~~~~~ 333 (394)
T PTZ00422 307 EGMVTKFVSGNTGEVLYTHKQPLKKRK 333 (394)
T ss_pred CEEEEEEEeCCCCcEEEEeeecccchh
Confidence 999999996689999999999877654
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.96 E-value=8.6e-28 Score=245.44 Aligned_cols=218 Identities=22% Similarity=0.383 Sum_probs=162.4
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCch----hHH-HHHHHhhcccccCCC
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYI----SQW-DQFTAQIEPIASTVP 361 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~----~~w-d~f~~~i~~~~s~vP 361 (570)
++|+++||+|..... .|....+.+.+++++ .+|||||++||++|++|.. ..| +.|.+.++.+...+|
T Consensus 1 ~~f~~~gD~g~~~~~-------~~~~~~~~~~~~~~~-~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P 72 (277)
T cd07378 1 LRFLALGDWGGGGTA-------GQKAVAKAMAKVAAE-LGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVP 72 (277)
T ss_pred CeEEEEeecCCCCCH-------HHHHHHHHHHHHHHh-cCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCC
Confidence 479999999975211 122233445555554 6899999999999988742 334 345565555556788
Q ss_pred eEEEE------------------------------EEEEEC------CEEEEEEeCCCCC---------------CCCHH
Q 008327 362 YMIAR------------------------------YSTDYG------MFRFCIADTEQDW---------------REGTE 390 (570)
Q Consensus 362 ~m~~~------------------------------YSfd~G------~vhFi~LDTe~~~---------------~~g~~ 390 (570)
+|+++ |+|+++ +++||+|||.... ..+.+
T Consensus 73 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
T cd07378 73 WYLVLGNHDYSGNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEE 152 (277)
T ss_pred eEEecCCcccCCCchheeehhccCCCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHH
Confidence 88766 688888 7999999997531 13589
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccc
Q 008327 391 QYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQN 470 (570)
Q Consensus 391 Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~ 470 (570)
|++||+++|+++. .+|+||++|+|+ |+.... . .. ... ++.|++++++++|+++|+||+|.+++..+
T Consensus 153 Q~~wL~~~L~~~~---~~~~iv~~H~P~-~~~~~~-~--~~--~~~-~~~l~~l~~~~~v~~vl~GH~H~~~~~~~---- 218 (277)
T cd07378 153 QLAWLEKTLAAST---ADWKIVVGHHPI-YSSGEH-G--PT--SCL-VDRLLPLLKKYKVDAYLSGHDHNLQHIKD---- 218 (277)
T ss_pred HHHHHHHHHHhcC---CCeEEEEeCccc-eeCCCC-C--Cc--HHH-HHHHHHHHHHcCCCEEEeCCcccceeeec----
Confidence 9999999999853 389999999999 765431 1 11 233 78999999999999999999999998852
Q ss_pred eecccCcccccCCCCCeEEEEeCCCCCCCCCCC---CCCCCcceeeeCCccEEEEEEecCCeEEEEEEECCCC
Q 008327 471 ICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFT---TLQTTWSLYRDYDHGFVKLTAFDHSNLLFEYKKSRDG 540 (570)
Q Consensus 471 ~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~---~~~~~ws~~~~~~~Gy~~v~~~n~t~L~~~~~~~~dG 540 (570)
...|+.||++|+||....... ...++|..++...+||.+++| ++++|+++|+ +.||
T Consensus 219 ------------~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v-~~~~l~~~~~-~~~g 277 (277)
T cd07378 219 ------------DGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLEL-TKEELTVRFY-DADG 277 (277)
T ss_pred ------------CCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEE-ecCEEEEEEE-CCCC
Confidence 125899999999887653322 123468888889999999999 7889999998 6665
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.90 E-value=1.5e-22 Score=205.44 Aligned_cols=216 Identities=16% Similarity=0.170 Sum_probs=153.3
Q ss_pred CCeEEEEEecCCCCCCCCCCccc-ccccchHHHHHHHHHhc----CCccEEEEcCceeecCCch----hHHHHHHHhhcc
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYN-NFQRGSLNTTRQLIQDL----KNIDIVFHIGDICYANGYI----SQWDQFTAQIEP 355 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~-~~q~~s~~t~~~i~~~~----~~~Dfvl~~GDi~Y~~g~~----~~wd~f~~~i~~ 355 (570)
.+++|++++|+|.+...+..... ......++.++++++.+ ++||||+++||+++..... .+|+.|.+.++.
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 46999999999998542211100 00112233445544432 4899999999999764432 457777777777
Q ss_pred cccCCCeEEEE-------------------------EEEEECCEEEEEEeCCCCC------CCCHHHHHHHHHHHhcccC
Q 008327 356 IASTVPYMIAR-------------------------YSTDYGMFRFCIADTEQDW------REGTEQYRFIEHCLASVDR 404 (570)
Q Consensus 356 ~~s~vP~m~~~-------------------------YSfd~G~vhFi~LDTe~~~------~~g~~Q~~WLe~dL~~~~r 404 (570)
+...+|+++++ |+|++|+++||+|||.... ....+|++||+++|+++.+
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql~WL~~~L~~~~~ 162 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTEESIKDYRDVFGDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQDVWLEEQLEIAKE 162 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCChhHHHHHHHHhCCcceEEEECCEEEEEeccccccCccccccchHHHHHHHHHHHHHHHh
Confidence 66678998876 7999999999999997532 1247999999999998754
Q ss_pred CCCCEEEEEeccccccCCCCccccCC--CCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccC
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEG--SFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKG 482 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g--~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~ 482 (570)
.+.+|+|+++|+|+ +..... ..+. ...... ++.|.++|++++|+++|+||.|.+++..
T Consensus 163 ~~~~~~iv~~H~P~-~~~~~~-~~~~~~~~~~~~-~~~l~~ll~~~~V~~v~~GH~H~~~~~~----------------- 222 (262)
T cd07395 163 SDCKHVIVFQHIPW-FLEDPD-EEDSYFNIPKSV-RKPLLDKFKKAGVKAVFSGHYHRNAGGR----------------- 222 (262)
T ss_pred ccCCcEEEEECcCC-ccCCCC-CCcccCCcCHHH-HHHHHHHHHhcCceEEEECccccCCceE-----------------
Confidence 46679999999999 654321 1111 111123 7899999999999999999999987642
Q ss_pred CCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEecCCeEEEEEE
Q 008327 483 SLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFDHSNLLFEYK 535 (570)
Q Consensus 483 ~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n~t~L~~~~~ 535 (570)
.+|+.|++++++|..+. ....||..+++ +++.+++||+
T Consensus 223 -~~g~~~~~~~~~~~~~~-------------~~~~g~~~~~v-~~~~~~~~~~ 260 (262)
T cd07395 223 -YGGLEMVVTSAIGAQLG-------------NDKSGLRIVKV-TEDKIVHEYY 260 (262)
T ss_pred -ECCEEEEEcCceecccC-------------CCCCCcEEEEE-CCCceeeeee
Confidence 24777888888876431 12479999999 7788999987
No 7
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.7e-22 Score=198.34 Aligned_cols=232 Identities=22% Similarity=0.343 Sum_probs=154.1
Q ss_pred CCCCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHH-HHHHhhccc----c
Q 008327 283 QDSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWD-QFTAQIEPI----A 357 (570)
Q Consensus 283 ~~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd-~f~~~i~~~----~ 357 (570)
++..++|+++||+|.... |+ |......+.+|.++ -++|||+.+||++|++|-..+.| +|.+.++.+ .
T Consensus 40 ~dgslsflvvGDwGr~g~-----~n--qs~va~qmg~ige~-l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pS 111 (336)
T KOG2679|consen 40 SDGSLSFLVVGDWGRRGS-----FN--QSQVALQMGEIGEK-LDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPS 111 (336)
T ss_pred CCCceEEEEEcccccCCc-----hh--HHHHHHHHHhHHHh-ccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcc
Confidence 356799999999995432 32 22223344555543 58999999999999998655443 343334333 2
Q ss_pred cCCCeEEEE-----------------------------EEEEEC-------CEEEEEEeCCC-------CCCC-------
Q 008327 358 STVPYMIAR-----------------------------YSTDYG-------MFRFCIADTEQ-------DWRE------- 387 (570)
Q Consensus 358 s~vP~m~~~-----------------------------YSfd~G-------~vhFi~LDTe~-------~~~~------- 387 (570)
-++||+.+. |..+.- ++.++++|+-. +|..
T Consensus 112 LQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~ 191 (336)
T KOG2679|consen 112 LQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKY 191 (336)
T ss_pred cccchhhhccCccccCchhhhhhHHHHhhccceecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHH
Confidence 256887666 111111 22333333221 1211
Q ss_pred CHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeec
Q 008327 388 GTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPI 467 (570)
Q Consensus 388 g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv 467 (570)
...|+.||+..|++ +.++|+||.+|||+ .+.+. | |.. ..+ +++|.|||++++||++++||+|+.|..-
T Consensus 192 ~~~~l~~le~~L~~---S~a~wkiVvGHh~i-~S~~~-H---G~T-~eL-~~~LlPiL~~n~VdlY~nGHDHcLQhis-- 259 (336)
T KOG2679|consen 192 LRALLSWLEVALKA---SRAKWKIVVGHHPI-KSAGH-H---GPT-KEL-EKQLLPILEANGVDLYINGHDHCLQHIS-- 259 (336)
T ss_pred HHHHHHHHHHHHHH---hhcceEEEecccce-ehhhc-c---CCh-HHH-HHHHHHHHHhcCCcEEEecchhhhhhcc--
Confidence 25788999999998 67899999999999 66643 3 322 234 8999999999999999999999999873
Q ss_pred ccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcc----eeeeCCccEEEEEEecCCeEEEEEEECCCCcEE
Q 008327 468 YQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWS----LYRDYDHGFVKLTAFDHSNLLFEYKKSRDGKVY 543 (570)
Q Consensus 468 ~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws----~~~~~~~Gy~~v~~~n~t~L~~~~~~~~dG~v~ 543 (570)
...+++-|+++|+|. +...-...+|.|. .|....-||+.+++ .+.++++.|+ +..|+++
T Consensus 260 --------------~~e~~iqf~tSGagS-kaw~g~~~~~~~~p~~lkF~YdgqGfmsv~i-s~~e~~vvfy-D~~G~~L 322 (336)
T KOG2679|consen 260 --------------SPESGIQFVTSGAGS-KAWRGTDHNPEVNPKELKFYYDGQGFMSVEI-SHSEARVVFY-DVSGKVL 322 (336)
T ss_pred --------------CCCCCeeEEeeCCcc-cccCCCccCCccChhheEEeeCCCceEEEEE-ecceeEEEEE-eccCceE
Confidence 113466666766654 4322222334443 45556679999999 7889999999 7899999
Q ss_pred EEEEEEec
Q 008327 544 DSFRISRD 551 (570)
Q Consensus 544 D~f~I~k~ 551 (570)
.+....|.
T Consensus 323 hk~~t~kr 330 (336)
T KOG2679|consen 323 HKWSTSKR 330 (336)
T ss_pred EEeecccc
Confidence 98775554
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.80 E-value=2.5e-18 Score=171.62 Aligned_cols=204 Identities=14% Similarity=0.240 Sum_probs=139.4
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh----cCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeE
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD----LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYM 363 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~----~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m 363 (570)
||++++|+|.+..... .+ ........++++++. ..++|+|+++||+++. +...+|+.+.+.++.+ .+|++
T Consensus 1 r~~~iSDlH~~~~~~~-~~--~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~-~~~~~~~~~~~~l~~~--~~p~~ 74 (240)
T cd07402 1 LLAQISDLHLRADGEG-AL--LGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD-GSPESYERLRELLAAL--PIPVY 74 (240)
T ss_pred CEEEEeCCccCCCCcc-ee--cCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC-CCHHHHHHHHHHHhhc--CCCEE
Confidence 6999999998753210 00 001123344444443 2489999999999964 4456677777777655 67877
Q ss_pred EEE------------------------EEEEECCEEEEEEeCCCCC----CCCHHHHHHHHHHHhcccCCCCCEEEEEec
Q 008327 364 IAR------------------------YSTDYGMFRFCIADTEQDW----REGTEQYRFIEHCLASVDRQKQPWLIFLAH 415 (570)
Q Consensus 364 ~~~------------------------YSfd~G~vhFi~LDTe~~~----~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H 415 (570)
.++ |+|+.|+++||+||+.... ....+|++||++.|++.. ..++|+++|
T Consensus 75 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~---~~~~il~~H 151 (240)
T cd07402 75 LLPGNHDDRAAMRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAP---DKPTLVFLH 151 (240)
T ss_pred EeCCCCCCHHHHHHhhccccccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCC---CCCEEEEEC
Confidence 666 7899999999999987532 135789999999999853 345788889
Q ss_pred cccccCCCCccccCCCCCcchhHHHHHHHHHHC-CCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCC
Q 008327 416 RVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKY-KVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGG 494 (570)
Q Consensus 416 ~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky-~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~ 494 (570)
+|+ +....... +. .... .++.+.+++.++ +|+++|+||.|.+.+.. .+|+.++++|+
T Consensus 152 ~pp-~~~~~~~~-~~-~~~~-~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~------------------~~g~~~~~~gs 209 (240)
T cd07402 152 HPP-FPVGIAWM-DA-IGLR-NAEALAAVLARHPNVRAILCGHVHRPIDGS------------------WGGIPLLTAPS 209 (240)
T ss_pred CCC-ccCCchhh-hh-hhCC-CHHHHHHHHhcCCCeeEEEECCcCchHHeE------------------ECCEEEEEcCc
Confidence 888 55432111 11 1111 278999999999 99999999999865442 36788999999
Q ss_pred CCCCCCCCCCCCCCcceeeeCCccEEEEEEec
Q 008327 495 AGASLSPFTTLQTTWSLYRDYDHGFVKLTAFD 526 (570)
Q Consensus 495 aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n 526 (570)
.|..... .++...+....+||....+++
T Consensus 210 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 210 TCHQFAP----DLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred ceeeecC----CCCcccccccCCCCcEEEEec
Confidence 8876422 223333445678999888754
No 9
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.80 E-value=1.1e-17 Score=183.02 Aligned_cols=268 Identities=16% Similarity=0.264 Sum_probs=134.4
Q ss_pred CceEEEEEeCCCCCCCEEEEEEeeecCCCcccccceEEEEeCCCCCCCCCeEEEEEecCCCCCCCCCCcccccccchHHH
Q 008327 237 PGYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNT 316 (570)
Q Consensus 237 ~g~~h~a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p~~g~~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t 316 (570)
..+.+++.++||+|+|+|+||+.... ....|..++|+|+|... ...+||+++++.+... +....
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~---~~~~s~~g~~rT~p~~~-~~~~r~a~~SC~~~~~------------~~~~~ 123 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDG---GGQTSPVGRFRTAPDGD-PDPFRFAFGSCQNYED------------GYFPA 123 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE-----TTEE---EEEE--TT------EEEEEE----CCC---------------HH
T ss_pred CCeEeecccCCCCCCceEEEEEEEec---CCCCCCceEEEcCCCCC-CCceEEEEECCCCccc------------ChHHH
Confidence 35889999999999999999999842 13347899999996533 3459999999986532 12356
Q ss_pred HHHHHHhcCCccEEEEcCceeecCCc-----------------------hh----HHHHHH--HhhcccccCCCeEEEE-
Q 008327 317 TRQLIQDLKNIDIVFHIGDICYANGY-----------------------IS----QWDQFT--AQIEPIASTVPYMIAR- 366 (570)
Q Consensus 317 ~~~i~~~~~~~Dfvl~~GDi~Y~~g~-----------------------~~----~wd~f~--~~i~~~~s~vP~m~~~- 366 (570)
++++++. .++||+||+||++|+++. .. .|..+. ..++.+.+++|++...
T Consensus 124 ~~~~a~~-~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwD 202 (453)
T PF09423_consen 124 YRRIAER-DDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWD 202 (453)
T ss_dssp HHHHTT--S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---
T ss_pred HHhhhcc-CCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEcc
Confidence 7777764 589999999999999842 00 121111 1223344456665554
Q ss_pred -----------------------------------------------------EEEEECC-EEEEEEeCCCCCC------
Q 008327 367 -----------------------------------------------------YSTDYGM-FRFCIADTEQDWR------ 386 (570)
Q Consensus 367 -----------------------------------------------------YSfd~G~-vhFi~LDTe~~~~------ 386 (570)
++|++|+ +.|++||+.....
T Consensus 203 DHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~ 282 (453)
T PF09423_consen 203 DHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDG 282 (453)
T ss_dssp STTTSTT-BTTB-STT---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCS
T ss_pred CceecccccCCccccccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccc
Confidence 6799999 9999999874211
Q ss_pred ---------------CCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCcc-------ccCC--CCCcchhHHHHH
Q 008327 387 ---------------EGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSY-------AVEG--SFAEPMGRESLQ 442 (570)
Q Consensus 387 ---------------~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~-------~~~g--~~~~~~~r~~l~ 442 (570)
.|.+|++||++.|++ +.++|+|+..-.|+ ....... ..+. .+ +..|++|.
T Consensus 283 ~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~---s~a~~kvi~s~v~~-~~~~~~~~~~~~~~~~d~W~g~--~~er~~Ll 356 (453)
T PF09423_consen 283 PGDTCPAADDPSRTMLGEEQWDWLEDWLAS---SQATWKVIGSSVPF-SPLNFPDAAEGLPFNMDSWDGY--PAERQRLL 356 (453)
T ss_dssp SEE--HHHH-TT--SS-HHHHHHHHHHHHH-----SSEEEEE-SS---S---SS-SS-S--EETTSGGGS--HHHHHHHH
T ss_pred cccccccccCCccCcCCHHHHHHHHHHHhc---CCCcEEEEEeCCce-ecccccccccccccCCCchhhC--HHHHHHHH
Confidence 268999999999998 56899999987776 3322100 0110 12 12289999
Q ss_pred HHHHHCCCe--EEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCC---CC------CCCCCcce
Q 008327 443 KLWQKYKVD--IAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSP---FT------TLQTTWSL 511 (570)
Q Consensus 443 ~L~~ky~Vd--lvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~---~~------~~~~~ws~ 511 (570)
.++.+.++. ++|+|.+|...-...-.+..-.. . ......+-+++++=.+.... .. ....++..
T Consensus 357 ~~l~~~~~~~vV~LSGDvH~~~~~~~~~~~~~~~----~--~~~~~~~Ef~~s~vts~~~~~~~~~~~~~~~~~~np~~~ 430 (453)
T PF09423_consen 357 DFLRESGIRNVVFLSGDVHASAASRIPPDDADPP----D--GPGSVGVEFTSSSVTSPGFGLGTSPALDRALDKANPHLK 430 (453)
T ss_dssp HHHHHTT---EEEEE-SSSSEEEEEEESSTT-------T--TS-EEEEEEE---SSTT-S-BSB-TTHHH-HHHH-TTEE
T ss_pred HHHHhhCCCCEEEEecCcchheeeeccccccccc----C--CCCCeEEEEECCCccCCCcccccchhhhhhhhhcCCceE
Confidence 999988875 88999999865443211110000 0 00012344444431111100 00 01123344
Q ss_pred eee-CCccEEEEEEecCCeEEEEE
Q 008327 512 YRD-YDHGFVKLTAFDHSNLLFEY 534 (570)
Q Consensus 512 ~~~-~~~Gy~~v~~~n~t~L~~~~ 534 (570)
|.+ ..+||+.|++ +..+++.+|
T Consensus 431 ~~~~~~~G~~~i~~-~~~~~~~~~ 453 (453)
T PF09423_consen 431 FADLRNFGYVEIDI-TPERVTAEW 453 (453)
T ss_dssp EEE-B-EEEEEEEE-ETTEEEEEE
T ss_pred EeECCCCcEEEEEE-ccceEEEEC
Confidence 444 5799999999 888998875
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.76 E-value=2e-17 Score=168.73 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=125.2
Q ss_pred eEEEEEecCCCCCCC-CCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecCCc--hhHHHHHHHhhcccccCCC
Q 008327 287 QQVIIFGDMGKDEAD-GSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYANGY--ISQWDQFTAQIEPIASTVP 361 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~-g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g~--~~~wd~f~~~i~~~~s~vP 361 (570)
|||++++|+|....+ +.+.+ ...+...++++++++ .+||+|+++||+++.... ...|+.+.+.++.+ .+|
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~---~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l--~~p 75 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRY---YRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRL--KGP 75 (267)
T ss_pred CeEEEEeccccccCCCcccch---HHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhc--CCC
Confidence 689999999965432 11111 112344555555543 469999999999964332 14566666666543 378
Q ss_pred eEEEE-------------------------EEEEECCEEEEEEeCCCC--------------------------------
Q 008327 362 YMIAR-------------------------YSTDYGMFRFCIADTEQD-------------------------------- 384 (570)
Q Consensus 362 ~m~~~-------------------------YSfd~G~vhFi~LDTe~~-------------------------------- 384 (570)
+++++ |+|++|+++||+||+...
T Consensus 76 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (267)
T cd07396 76 VHHVLGNHDLYNPSREYLLLYTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNLGLYLSEPRFVD 155 (267)
T ss_pred EEEecCccccccccHhhhhcccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchhhhhccCcccee
Confidence 88777 889999999999998531
Q ss_pred C--CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHC-CCeEEEeCCcccc
Q 008327 385 W--REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKY-KVDIAVFGHVHNY 461 (570)
Q Consensus 385 ~--~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky-~VdlvlsGH~H~Y 461 (570)
+ ..+.+|++||+++|++... +..++||++|+|+ +.... ..... ... ++.+.+++.+| +|+++|+||.|.+
T Consensus 156 ~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~-~~~~~--~~~~~--~~~-~~~~~~ll~~~~~V~~v~~GH~H~~ 228 (267)
T cd07396 156 WNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPL-HPEST--SPHGL--LWN-HEEVLSILRAYGCVKACISGHDHEG 228 (267)
T ss_pred ccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccC-CCCCC--Ccccc--ccC-HHHHHHHHHhCCCEEEEEcCCcCCC
Confidence 0 2357999999999998642 3346899999998 65432 11111 112 68899999995 8999999999998
Q ss_pred ceeeecccceecccCcccccCCCCCeEEEEeCCCCCC
Q 008327 462 ERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGAS 498 (570)
Q Consensus 462 eRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~ 498 (570)
+... .+|+.|+++|+-...
T Consensus 229 ~~~~------------------~~gi~~~~~~a~~~~ 247 (267)
T cd07396 229 GYAQ------------------RHGIHFLTLEGMVET 247 (267)
T ss_pred Cccc------------------cCCeeEEEechhhcC
Confidence 6431 368889999886553
No 11
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.73 E-value=7.4e-17 Score=169.76 Aligned_cols=203 Identities=23% Similarity=0.398 Sum_probs=147.7
Q ss_pred ceEEEEEeCCCCCCCEEEEEEeeecCCCcccccceEEEEeCCCCCCCCCeEEEEEecCCCCCCCCCCcccccccchHHHH
Q 008327 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTT 317 (570)
Q Consensus 238 g~~h~a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p~~g~~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~ 317 (570)
.+.+++.++||+|++.|+||+.... .-|.+++|+|+|.++. .++|+.+||..+.. |+.+-+++.
T Consensus 98 dhtv~v~~~gL~P~~~yfYRf~~~~-----~~spvGrtrTapa~~~--~i~~~~fa~ascQ~---------~~~gy~~aY 161 (522)
T COG3540 98 DHTVHVDLRGLSPDQDYFYRFKAGD-----ERSPVGRTRTAPAPGR--AIRFVWFADASCQG---------WEIGYMTAY 161 (522)
T ss_pred CceEEEeccCCCCCceEEEEEeeCC-----ccccccccccCCCCCC--cchhhhhhhccccc---------cccchhHHH
Confidence 5889999999999999999998752 2378999999998765 48899999987654 344556677
Q ss_pred HHHHHhcCCccEEEEcCceeecCCchhH------H----------------HHHHH---------hhcccccCCCeEEEE
Q 008327 318 RQLIQDLKNIDIVFHIGDICYANGYISQ------W----------------DQFTA---------QIEPIASTVPYMIAR 366 (570)
Q Consensus 318 ~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~------w----------------d~f~~---------~i~~~~s~vP~m~~~ 366 (570)
+.|.+ .++||+||.||.+|+.|.... | |+|.. .++...+.+||++..
T Consensus 162 ~~ma~--~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~W 239 (522)
T COG3540 162 KTMAK--EEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQW 239 (522)
T ss_pred HHHHh--cCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEe
Confidence 77776 579999999999999763211 1 22222 233445688999888
Q ss_pred ------------------------------------------------------EEEEECC-EEEEEEeCCCCC------
Q 008327 367 ------------------------------------------------------YSTDYGM-FRFCIADTEQDW------ 385 (570)
Q Consensus 367 ------------------------------------------------------YSfd~G~-vhFi~LDTe~~~------ 385 (570)
-+|.||+ ..|.+||+....
T Consensus 240 DDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~ 319 (522)
T COG3540 240 DDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCG 319 (522)
T ss_pred ccccccccccccccccCCCCChHHHHHHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccC
Confidence 3799998 678999987532
Q ss_pred C----------------CCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCC---C----C-ccccCCCCCcchhHHHH
Q 008327 386 R----------------EGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSS---D----L-SYAVEGSFAEPMGRESL 441 (570)
Q Consensus 386 ~----------------~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss---~----~-~~~~~g~~~~~~~r~~l 441 (570)
. .|..|.+||++.|.+ +++.|.|+..--||.--. . . ....++.-.-+++|+.|
T Consensus 320 dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerL 396 (522)
T COG3540 320 DGNPPNCQAVAGSAATMLGEQQEQWLKRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERL 396 (522)
T ss_pred CCCcchhhhhhCccccchhhHHHHHHHhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHH
Confidence 0 278999999999998 789999988777762110 0 0 00011111124459999
Q ss_pred HHHHHHCCCe--EEEeCCcccc
Q 008327 442 QKLWQKYKVD--IAVFGHVHNY 461 (570)
Q Consensus 442 ~~L~~ky~Vd--lvlsGH~H~Y 461 (570)
...+...++. ++|+|.+|..
T Consensus 397 l~fi~~~~~~N~V~LtgDvH~~ 418 (522)
T COG3540 397 LRFIADRKIRNTVVLTGDVHYS 418 (522)
T ss_pred HHHHHhcCCCCcEEEechhHHH
Confidence 9999998886 8999999953
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.72 E-value=1.3e-15 Score=156.12 Aligned_cols=217 Identities=15% Similarity=0.220 Sum_probs=135.6
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh----cCCccEEEEcCceeecCCchhHHHHHHHhhcccccCC
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD----LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTV 360 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~----~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~v 360 (570)
.++||+.++|+|....... .... ....+.+++++++ ..++||||++||++. ++....++.+.+.++.+ .+
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~-~~~~--~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~-~~~~~~~~~~~~~l~~l--~~ 86 (275)
T PRK11148 13 ARVRILQITDTHLFADEHE-TLLG--VNTWESYQAVLEAIRAQQHEFDLIVATGDLAQ-DHSSEAYQHFAEGIAPL--RK 86 (275)
T ss_pred CCEEEEEEcCcccCCCCCC-ceec--cCHHHHHHHHHHHHHhhCCCCCEEEECCCCCC-CCCHHHHHHHHHHHhhc--CC
Confidence 4699999999997432111 1100 1122344444443 247999999999996 45566778888777665 46
Q ss_pred CeEEEE---------------------E-EEEECCEEEEEEeCCCCC----CCCHHHHHHHHHHHhcccCCCCCEEEEEe
Q 008327 361 PYMIAR---------------------Y-STDYGMFRFCIADTEQDW----REGTEQYRFIEHCLASVDRQKQPWLIFLA 414 (570)
Q Consensus 361 P~m~~~---------------------Y-Sfd~G~vhFi~LDTe~~~----~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~ 414 (570)
|+++++ + .+..++++||+|||.... ..+.+|++||++.|++.. +.+-+|+++
T Consensus 87 Pv~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~--~~~~vv~~h 164 (275)
T PRK11148 87 PCVWLPGNHDFQPAMYSALQDAGISPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAP--ERHTLVLLH 164 (275)
T ss_pred cEEEeCCCCCChHHHHHHHhhcCCCccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCC--CCCeEEEEc
Confidence 887777 1 233456999999997432 236899999999998852 233345555
Q ss_pred ccccccCCCCccccCCCCCcchhHHHHHHHHHHC-CCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeC
Q 008327 415 HRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKY-KVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAG 493 (570)
Q Consensus 415 H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky-~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G 493 (570)
|+|+ .....|.... .. . ..++|.+++++| +|+++|+||+|..... ..+|+.+++++
T Consensus 165 H~P~-~~~~~~~d~~-~l--~-n~~~l~~ll~~~~~v~~vl~GH~H~~~~~------------------~~~gi~~~~~p 221 (275)
T PRK11148 165 HHPL-PAGCAWLDQH-SL--R-NAHELAEVLAKFPNVKAILCGHIHQELDL------------------DWNGRRLLATP 221 (275)
T ss_pred CCCC-CCCcchhhcc-CC--C-CHHHHHHHHhcCCCceEEEecccChHHhc------------------eECCEEEEEcC
Confidence 5665 3322221111 11 1 267999999998 8999999999975432 13678888887
Q ss_pred CCCCCCCCCCCCCCCcceeeeCCccEEEEEEecCCeEEEEEEE
Q 008327 494 GAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFDHSNLLFEYKK 536 (570)
Q Consensus 494 ~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n~t~L~~~~~~ 536 (570)
+.+..... ..... .......||..+++..+..+..+.++
T Consensus 222 s~~~q~~~---~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~ 260 (275)
T PRK11148 222 STCVQFKP---HCTNF-TLDTVAPGWRELELHADGSLETEVHR 260 (275)
T ss_pred CCcCCcCC---CCCcc-ccccCCCcEEEEEEcCCCcEEEEEEE
Confidence 77654311 11111 12233468988888444556665554
No 13
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.66 E-value=1.1e-15 Score=151.07 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=110.1
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchH-HHHHHHHHhc--CCccEEEEcCceeecCCchhHHHHHHHhhcccc-cCCCe
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSL-NTTRQLIQDL--KNIDIVFHIGDICYANGYISQWDQFTAQIEPIA-STVPY 362 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~-~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~-s~vP~ 362 (570)
|||++++|+|..... .+..+ +.++++++.. .++|+|+++||++.......+|+.+.+.++.+. +.+|+
T Consensus 1 f~~~~~~D~q~~~~~--------~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~ 72 (214)
T cd07399 1 FTLAVLPDTQYYTES--------YPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPY 72 (214)
T ss_pred CEEEEecCCCcCCcC--------CHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcE
Confidence 689999999975431 11112 2445555543 579999999999975444678999998888876 67899
Q ss_pred EEEEEEEEECCE-EEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCC-CCCcchhHHH
Q 008327 363 MIARYSTDYGMF-RFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEG-SFAEPMGRES 440 (570)
Q Consensus 363 m~~~YSfd~G~v-hFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g-~~~~~~~r~~ 440 (570)
++++ ||= .++.+|+. ...+|++||++.|++. +..++|+++|+|+ +..+.+..... .......++.
T Consensus 73 ~~~~-----GNHD~~~~ld~~----~~~~ql~WL~~~L~~~---~~~~~iv~~H~p~-~~~~~~~~~~~~~~~~~~~~~~ 139 (214)
T cd07399 73 SVLA-----GNHDLVLALEFG----PRDEVLQWANEVLKKH---PDRPAILTTHAYL-NCDDSRPDSIDYDSDVNDGQQI 139 (214)
T ss_pred EEEC-----CCCcchhhCCCC----CCHHHHHHHHHHHHHC---CCCCEEEEecccc-cCCCCcCcccccccccccHHHH
Confidence 8765 432 23445543 4589999999999974 3346899999998 65543211110 0001122568
Q ss_pred HHHHHHHC-CCeEEEeCCccccceeee
Q 008327 441 LQKLWQKY-KVDIAVFGHVHNYERICP 466 (570)
Q Consensus 441 l~~L~~ky-~VdlvlsGH~H~YeRt~p 466 (570)
|++|+++| +|+++|+||+|.+.+...
T Consensus 140 ~~~ll~~~~~V~~v~~GH~H~~~~~~~ 166 (214)
T cd07399 140 WDKLVKKNDNVFMVLSGHVHGAGRTTL 166 (214)
T ss_pred HHHHHhCCCCEEEEEccccCCCceEEE
Confidence 99999998 799999999999988753
No 14
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.64 E-value=4.3e-15 Score=150.82 Aligned_cols=161 Identities=16% Similarity=0.255 Sum_probs=109.2
Q ss_pred EEEEecCCCCCCCCCCcccccccchH-HHHHHHHHhcCCccEEEEcCceeecCC--------chhHHHHHHHhhccccc-
Q 008327 289 VIIFGDMGKDEADGSNEYNNFQRGSL-NTTRQLIQDLKNIDIVFHIGDICYANG--------YISQWDQFTAQIEPIAS- 358 (570)
Q Consensus 289 f~v~GD~g~~~~~g~~~~~~~q~~s~-~t~~~i~~~~~~~Dfvl~~GDi~Y~~g--------~~~~wd~f~~~i~~~~s- 358 (570)
|+.++|.|.+..... . .... +.+.+.+++ .+||+|+++||++.... ...+|+.|++.+.....
T Consensus 2 ~~~iSDlH~g~~~~~-~-----~~~~~~~~~~~i~~-~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T cd07401 2 FVHISDIHVSSFHPP-N-----RAQDETFCSNFIDV-IKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVI 74 (256)
T ss_pred EEEecccccCCcCch-h-----hhhHHHHHHHHHHh-hCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCC
Confidence 788999998753210 0 0001 112223332 57999999999995421 24679889887754322
Q ss_pred -CCCeEEEE-------------------------------EEE--EECCEEEEEEeCCCC----------CCCCHHHHHH
Q 008327 359 -TVPYMIAR-------------------------------YST--DYGMFRFCIADTEQD----------WREGTEQYRF 394 (570)
Q Consensus 359 -~vP~m~~~-------------------------------YSf--d~G~vhFi~LDTe~~----------~~~g~~Q~~W 394 (570)
..|++.++ |.+ +.|+++||+|||... .....+|++|
T Consensus 75 ~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~w 154 (256)
T cd07401 75 NKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLDR 154 (256)
T ss_pred CcceEEEeCCCCCcCCCCCccchhhHHHHhheecCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHHH
Confidence 46777665 222 249999999999742 1235899999
Q ss_pred HHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeec
Q 008327 395 IEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPI 467 (570)
Q Consensus 395 Le~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv 467 (570)
|+++|++. .+.+++||++|+|+ +.... . . ... ...+.++|++++|+++|+||.|.+++..|+
T Consensus 155 L~~~L~~~--~~~~~~IV~~HhP~-~~~~~---~-~---~~~-~~~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 155 LEKELEKS--TNSNYTIWFGHYPT-STIIS---P-S---AKS-SSKFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhc--ccCCeEEEEEcccc-hhccC---C-C---cch-hHHHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 99999875 34568999999998 54321 1 1 112 224999999999999999999999996666
No 15
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.57 E-value=4.8e-15 Score=117.70 Aligned_cols=62 Identities=37% Similarity=0.737 Sum_probs=42.1
Q ss_pred CCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEecCCeEEEEEEECCCCcEEEEE
Q 008327 485 NGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFDHSNLLFEYKKSRDGKVYDSF 546 (570)
Q Consensus 485 ~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n~t~L~~~~~~~~dG~v~D~f 546 (570)
+||||||+|+||+.++++..++|+|+++|+.+|||+||++.|+++|++||+++.||+|+|+|
T Consensus 1 kapVhiv~G~aG~~l~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGLDPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSVLDEF 62 (62)
T ss_dssp TS-EEEEE--S-T----B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T-CEE-
T ss_pred CCCEEEEECcCCCCcccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcEecCC
Confidence 48999999999998888888899999999999999999988999999999999999999998
No 16
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.42 E-value=1.6e-12 Score=134.40 Aligned_cols=140 Identities=15% Similarity=0.191 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCccEEEEcCceeecCCchh--------HHHHHHHhhcccccCCCeEEEE---------------------
Q 008327 316 TTRQLIQDLKNIDIVFHIGDICYANGYIS--------QWDQFTAQIEPIASTVPYMIAR--------------------- 366 (570)
Q Consensus 316 t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~--------~wd~f~~~i~~~~s~vP~m~~~--------------------- 366 (570)
+++.+.+...++||||++||++..+.... .+..+++.++.....+|+++++
T Consensus 58 ~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~ 137 (296)
T cd00842 58 ALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLY 137 (296)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHH
Confidence 44555444468999999999997653221 2455666666555667766554
Q ss_pred ------------------------EEEE-ECCEEEEEEeCCCCC-----------CCCHHHHHHHHHHHhcccCCCCCEE
Q 008327 367 ------------------------YSTD-YGMFRFCIADTEQDW-----------REGTEQYRFIEHCLASVDRQKQPWL 410 (570)
Q Consensus 367 ------------------------YSfd-~G~vhFi~LDTe~~~-----------~~g~~Q~~WLe~dL~~~~r~~~pwv 410 (570)
|+++ .++++||+|||.... ....+|++||+++|+++.+. ...+
T Consensus 138 ~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~-~~~v 216 (296)
T cd00842 138 DALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQA-GEKV 216 (296)
T ss_pred HHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHC-CCeE
Confidence 6777 899999999997532 12478999999999987432 3457
Q ss_pred EEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCC--CeEEEeCCcccccee
Q 008327 411 IFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYK--VDIAVFGHVHNYERI 464 (570)
Q Consensus 411 Iv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~--VdlvlsGH~H~YeRt 464 (570)
++++|+|+ +.... .. . ...++.|.+|+++|+ |.++|+||.|..+-.
T Consensus 217 ~I~~HiPp-~~~~~----~~-~--~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 217 WIIGHIPP-GVNSY----DT-L--ENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred EEEeccCC-CCccc----cc-c--hHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 78899998 44321 00 0 122789999999997 778999999986544
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.41 E-value=1.7e-12 Score=118.30 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=90.7
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHH-HhhcccccCCCeEEE
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFT-AQIEPIASTVPYMIA 365 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~-~~i~~~~s~vP~m~~ 365 (570)
+||+++||+|..... ... ....+.+... ..++|+||++||+++.......+.... ..........|++++
T Consensus 1 ~ri~~isD~H~~~~~-------~~~-~~~~~~~~~~-~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (200)
T PF00149_consen 1 MRILVISDLHGGYDD-------DSD-AFRKLDEIAA-ENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFI 71 (200)
T ss_dssp EEEEEEEBBTTTHHH-------HCH-HHHHHHHHHH-HTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred CeEEEEcCCCCCCcc-------hhH-HHHHHHHHhc-cCCCCEEEeeccccccccccccchhhhccchhhhhcccccccc
Confidence 689999999976421 000 1122222222 378999999999998766544443322 223344567899988
Q ss_pred E---------------------------EEEEECCEEEEEEeCC---------CCCCCCHHHHHHHHHHHhcccCCCCCE
Q 008327 366 R---------------------------YSTDYGMFRFCIADTE---------QDWREGTEQYRFIEHCLASVDRQKQPW 409 (570)
Q Consensus 366 ~---------------------------YSfd~G~vhFi~LDTe---------~~~~~g~~Q~~WLe~dL~~~~r~~~pw 409 (570)
+ +.....+......... ........|..|+...+....+...++
T Consensus 72 ~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
T PF00149_consen 72 LGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDP 151 (200)
T ss_dssp E-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESE
T ss_pred ccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccc
Confidence 8 1111100001111111 111112233333322222222245679
Q ss_pred EEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccc
Q 008327 410 LIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNY 461 (570)
Q Consensus 410 vIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Y 461 (570)
+|+++|+|+ ++......... . ....++.++.++.+++|+++|+||+|.|
T Consensus 152 ~iv~~H~p~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 152 VIVFTHHPP-YSSSSDSSSYG-N-ESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEEESSSS-STTSSSTHHHS-S-EEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred eeEEEecCC-CCccccccccc-h-hhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 999999999 66543211100 0 1123789999999999999999999987
No 18
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.36 E-value=3e-11 Score=130.15 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=68.8
Q ss_pred EEEE-ECCEEEEEEeCCCCC-----CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCcccc-C--CCCCcchh
Q 008327 367 YSTD-YGMFRFCIADTEQDW-----REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAV-E--GSFAEPMG 437 (570)
Q Consensus 367 YSfd-~G~vhFi~LDTe~~~-----~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~-~--g~~~~~~~ 437 (570)
|||+ .+++|||+|||.... ...++|++||+++|++ .+.+++||++|||+ ++....... . +.. ...
T Consensus 294 YSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~---a~~k~VVVf~HHPp-~s~g~~~~Dp~~pg~~--~~n 367 (496)
T TIGR03767 294 YTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA---SSDTLFVLFSHHTS-WSMVNELTDPVDPGEK--RHL 367 (496)
T ss_pred EEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc---CCCCCEEEEECCCC-cccccccccccccccc--ccC
Confidence 9999 999999999997431 2358999999999997 34567999999998 765421110 0 100 112
Q ss_pred HHHHHHHHHHC-CCeEEEeCCcccccee
Q 008327 438 RESLQKLWQKY-KVDIAVFGHVHNYERI 464 (570)
Q Consensus 438 r~~l~~L~~ky-~VdlvlsGH~H~YeRt 464 (570)
.++|.++|++| +|.++|+||.|....+
T Consensus 368 ~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 368 GTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred HHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 57899999998 8999999999987644
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.36 E-value=1.1e-11 Score=120.99 Aligned_cols=164 Identities=14% Similarity=0.145 Sum_probs=96.0
Q ss_pred CeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchh-HHHHHHHhhcccc-cCCCeE
Q 008327 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYIS-QWDQFTAQIEPIA-STVPYM 363 (570)
Q Consensus 286 ~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~-~wd~f~~~i~~~~-s~vP~m 363 (570)
.+||++++|+|..................+.+.+++++ .+||+|+++||+++...... .+..+.+.++++. ..+|++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDA-EKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhh-cCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 48999999999876421100000111123344555543 68999999999998655422 2333444444433 367887
Q ss_pred EEEEEEEECCEEEEEEeCCCCC--CCCHHHHHHHHHHHhccc--CCCCCEEEEEeccccccCCCC-cc------c--cCC
Q 008327 364 IARYSTDYGMFRFCIADTEQDW--REGTEQYRFIEHCLASVD--RQKQPWLIFLAHRVLGYSSDL-SY------A--VEG 430 (570)
Q Consensus 364 ~~~YSfd~G~vhFi~LDTe~~~--~~g~~Q~~WLe~dL~~~~--r~~~pwvIv~~H~P~~yss~~-~~------~--~~g 430 (570)
+++ .++|. ....+|++||+++|++.. +....+.++++|+|+ ..... |. + .+.
T Consensus 81 ~~~--------------GNHD~~g~l~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~-~~~~~~~~~~~~~~g~~~d~ 145 (199)
T cd07383 81 ATF--------------GNHDGYDWIRPSQIEWFKETSAALKKKYGKPIPSLAFFHIPL-PEYREVWEGKGKVPGINNEK 145 (199)
T ss_pred EEC--------------ccCCCCCCCCHHHHHHHHHHHHHHhhccCCCCcceEEEecCh-HHHHhhhcccCCCCccCCcc
Confidence 543 22221 235799999999998863 234467899999987 54321 11 0 010
Q ss_pred CCCcchhHHHHHHHHHHCCCeEEEeCCccccceee
Q 008327 431 SFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERIC 465 (570)
Q Consensus 431 ~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~ 465 (570)
..........+..+.+..+|+++|+||+|.++..+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 146 VCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred cCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 10011112334444566899999999999987654
No 20
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.35 E-value=2e-11 Score=124.06 Aligned_cols=134 Identities=20% Similarity=0.206 Sum_probs=93.3
Q ss_pred CCccEEEEcCceeecCCc---hhHH----HHHHHhhcccccCCCeEEEE---------------------------EEEE
Q 008327 325 KNIDIVFHIGDICYANGY---ISQW----DQFTAQIEPIASTVPYMIAR---------------------------YSTD 370 (570)
Q Consensus 325 ~~~Dfvl~~GDi~Y~~g~---~~~w----d~f~~~i~~~~s~vP~m~~~---------------------------YSfd 370 (570)
.+||+|+++||++.. |. ..+| ++|.+.+.++....|++.++ |+|+
T Consensus 44 l~PD~vv~lGDL~d~-G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~~Fg~~~~~~~ 122 (257)
T cd08163 44 LKPDSTIFLGDLFDG-GRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEKYFGPTSRVID 122 (257)
T ss_pred cCCCEEEEecccccC-CeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHHHhCCCceEEE
Confidence 579999999999854 43 2344 45566665554457877776 7899
Q ss_pred ECCEEEEEEeCCCCC-----CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCC------------
Q 008327 371 YGMFRFCIADTEQDW-----REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFA------------ 433 (570)
Q Consensus 371 ~G~vhFi~LDTe~~~-----~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~------------ 433 (570)
+|+++||+|||.... ....+|.+||++.|+... ....+|++.|+|+ |.... ..+|..+
T Consensus 123 ~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~~p~ILl~H~Pl-yr~~~--~~cg~~re~~~~~~~~~g~ 197 (257)
T cd08163 123 VGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKV--KSKPRILLTHVPL-YRPPN--TSCGPLRESKTPLPYGYGY 197 (257)
T ss_pred ECCEEEEEEccccccCCcccccchhHHHHHHhhhhccC--CCCcEEEEecccc-ccCCC--CCCCCccccCCCCCCCCCc
Confidence 999999999996321 234689999999998642 2334899999999 75432 1222110
Q ss_pred --c-chhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 434 --E-PMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 434 --~-~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
+ .+..+.-..||++.+..+||+||+|.|=..
T Consensus 198 ~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 198 QYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred cceeecCHHHHHHHHHhhCCcEEEecCCCcccee
Confidence 0 112355567888899999999999987443
No 21
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.32 E-value=4.6e-11 Score=119.53 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=108.2
Q ss_pred EEEEecCCCCCC--CCCCcccccccchHHHHHHHHH---h-cCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCe
Q 008327 289 VIIFGDMGKDEA--DGSNEYNNFQRGSLNTTRQLIQ---D-LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPY 362 (570)
Q Consensus 289 f~v~GD~g~~~~--~g~~~~~~~q~~s~~t~~~i~~---~-~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~ 362 (570)
+++++|+|.... .+.+.+ .....+.++++.+ . ..++|+|+++||++.. +........++.++.+ ..|+
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~---g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~-~~~~~~~~~l~~l~~l--~~~v 74 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVF---GPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA-MKLEEAKLDLAWIDAL--PGTK 74 (232)
T ss_pred CeEEEeeccCCCCCCCCccc---CccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC-CChHHHHHHHHHHHhC--CCCe
Confidence 357889997632 111122 2222334444433 2 2489999999999843 3322333333333332 1244
Q ss_pred EEEE---------------------------EEEEECCEEEEEEeC--CC--CC-----------C--CCHHHHHHHHHH
Q 008327 363 MIAR---------------------------YSTDYGMFRFCIADT--EQ--DW-----------R--EGTEQYRFIEHC 398 (570)
Q Consensus 363 m~~~---------------------------YSfd~G~vhFi~LDT--e~--~~-----------~--~g~~Q~~WLe~d 398 (570)
+.++ .++..+.+.|+.++. .. .+ . ....|++||++.
T Consensus 75 ~~V~GNHD~~~~~~~~~~~~l~~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 154 (232)
T cd07393 75 VLLKGNHDYWWGSASKLRKALEESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELS 154 (232)
T ss_pred EEEeCCccccCCCHHHHHHHHHhcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHH
Confidence 4444 345567889998763 11 11 0 025689999999
Q ss_pred HhcccCC-CCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCc
Q 008327 399 LASVDRQ-KQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEK 477 (570)
Q Consensus 399 L~~~~r~-~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~ 477 (570)
|+++... ...++|++.|+|+ +.... ..+.+..++++++|+++|+||.|.+++..|+..
T Consensus 155 L~~~~~~~~~~~~i~~~H~p~-~~~~~------------~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~-------- 213 (232)
T cd07393 155 LKAAKKREKEKIKIVMLHYPP-ANENG------------DDSPISKLIEEYGVDICVYGHLHGVGRDRAING-------- 213 (232)
T ss_pred HHHHHhCCCCCCEEEEECCCC-cCCCC------------CHHHHHHHHHHcCCCEEEECCCCCCcccccccc--------
Confidence 9876432 2357899999998 54321 135788899999999999999999999877742
Q ss_pred ccccCCCCCeEEEEeCCC
Q 008327 478 HYYKGSLNGTIHIAAGGA 495 (570)
Q Consensus 478 ~~y~~~~~g~vyIv~G~a 495 (570)
..+|+.|.++.++
T Consensus 214 -----~~~gi~~~~~~~~ 226 (232)
T cd07393 214 -----ERGGIRYQLVSAD 226 (232)
T ss_pred -----eECCEEEEEEcch
Confidence 2367777777553
No 22
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.12 E-value=3e-09 Score=101.59 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=91.1
Q ss_pred EEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEE--
Q 008327 289 VIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIAR-- 366 (570)
Q Consensus 289 f~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~-- 366 (570)
+++++|+|.... .+.. ..++ ..++|+|+++||++.. +.......+ +.++. ..+|.++++
T Consensus 1 i~~~sD~H~~~~------------~~~~--~~~~-~~~~D~vv~~GDl~~~-~~~~~~~~~-~~l~~--~~~p~~~v~GN 61 (188)
T cd07392 1 ILAISDIHGDVE------------KLEA--IILK-AEEADAVIVAGDITNF-GGKEAAVEI-NLLLA--IGVPVLAVPGN 61 (188)
T ss_pred CEEEEecCCCHH------------HHHH--HHhh-ccCCCEEEECCCccCc-CCHHHHHHH-HHHHh--cCCCEEEEcCC
Confidence 478999986421 1111 2222 2689999999999964 333222222 33332 245665555
Q ss_pred -------------------EEEEECCEEEEEEeCCCC--C----CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccC
Q 008327 367 -------------------YSTDYGMFRFCIADTEQD--W----REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYS 421 (570)
Q Consensus 367 -------------------YSfd~G~vhFi~LDTe~~--~----~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~ys 421 (570)
..+.+++++|+.+++... + ....+|++|+ +.|+. .+...+|++.|+|+ +.
T Consensus 62 HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~---~~~~~~ilv~H~pp-~~ 136 (188)
T cd07392 62 CDTPEILGLLTSAGLNLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNN---LLAKNLILVTHAPP-YG 136 (188)
T ss_pred CCCHHHHHhhhcCcEecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhc---cCCCCeEEEECCCC-cC
Confidence 355678899999987422 1 2346899998 44443 23345899999998 65
Q ss_pred CCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccc
Q 008327 422 SDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYE 462 (570)
Q Consensus 422 s~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Ye 462 (570)
... ...... ...+.+.|..++++++++++|+||.|.-.
T Consensus 137 ~~~--d~~~~~-~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 137 TAV--DRVSGG-FHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred Ccc--cccCCC-CccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 311 110000 01235799999999999999999999753
No 23
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.09 E-value=1.6e-09 Score=115.87 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=64.6
Q ss_pred EEEE-ECCE--EEEEEeCCCCC-----------CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCC-ccc----
Q 008327 367 YSTD-YGMF--RFCIADTEQDW-----------REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDL-SYA---- 427 (570)
Q Consensus 367 YSfd-~G~v--hFi~LDTe~~~-----------~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~-~~~---- 427 (570)
|+|+ .|++ |||+||+.... ..+.+|++||+++|+.+. .+.|++|+++|+|+ .+... ...
T Consensus 295 YsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi-~t~gi~~md~w~~ 372 (492)
T TIGR03768 295 YSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPI-AVSPIGSEMEWWL 372 (492)
T ss_pred eEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCc-ccCCccchhhhcc
Confidence 9999 5845 99999986411 135899999999999864 25689999999998 65221 100
Q ss_pred --cCC--CCCcchhHHHHHHHHHHC-CCeEEEeCCcccc
Q 008327 428 --VEG--SFAEPMGRESLQKLWQKY-KVDIAVFGHVHNY 461 (570)
Q Consensus 428 --~~g--~~~~~~~r~~l~~L~~ky-~VdlvlsGH~H~Y 461 (570)
... ...+...-.+|..+|++| +|-++|+||.|..
T Consensus 373 ~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 373 GAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred ccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 000 011111124899999998 7999999999953
No 24
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=98.97 E-value=1.5e-08 Score=103.25 Aligned_cols=160 Identities=17% Similarity=0.223 Sum_probs=103.5
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEE
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMI 364 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~ 364 (570)
++|+.++|.|..... ..+...+.+++++. .+||++++.||++.. |....++...+.++......|.++
T Consensus 1 ~~i~~isD~H~~~~~---------~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 70 (301)
T COG1409 1 MRIAHISDLHLGALG---------VDSEELLEALLAAIEQLKPDLLVVTGDLTND-GEPEEYRRLKELLARLELPAPVIV 70 (301)
T ss_pred CeEEEEecCcccccc---------cchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CCHHHHHHHHHHHhhccCCCceEe
Confidence 479999999987310 01223444444433 578999999999975 666666666666663333445555
Q ss_pred EE----------------------EEE--EE-CCEEEEEEeCCCCC----CCCHHHHHHHHHHHhcccCCCCCEEEEEec
Q 008327 365 AR----------------------YST--DY-GMFRFCIADTEQDW----REGTEQYRFIEHCLASVDRQKQPWLIFLAH 415 (570)
Q Consensus 365 ~~----------------------YSf--d~-G~vhFi~LDTe~~~----~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H 415 (570)
++ +.. .. +.++++.+|+.... ..+..|++||++.|++........+|+++|
T Consensus 71 vpGNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~~~~~~v~~~h 150 (301)
T COG1409 71 VPGNHDARVVNGEAFSDQFFNRYAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHH 150 (301)
T ss_pred eCCCCcCCchHHHHhhhhhcccCcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccccCceEEEecC
Confidence 55 111 12 56899999997542 346899999999999753221235677777
Q ss_pred cccccCCCCccccCCCCCcchhHHHHHHHHHHCC--CeEEEeCCcccc
Q 008327 416 RVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYK--VDIAVFGHVHNY 461 (570)
Q Consensus 416 ~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~--VdlvlsGH~H~Y 461 (570)
+|+ .....+. +.. .......+..++..++ |+++|+||.|.-
T Consensus 151 h~~-~~~~~~~--~~~--~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 151 HPL-PSPGTGV--DRV--ALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred CCC-CCCCCcc--cee--eeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 776 4433221 111 1111467788888888 999999999976
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.95 E-value=9.7e-09 Score=94.47 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=76.4
Q ss_pred EEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeecCCchhHHHHHHHhhcccccC-CCeEEE
Q 008327 289 VIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIAST-VPYMIA 365 (570)
Q Consensus 289 f~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~-vP~m~~ 365 (570)
|+.++|.+.+....... ......++++++. ..++|+|+++||+++. +...+|+.+.+.++.+... +|++.+
T Consensus 1 il~isD~Hl~~~~~~~~-----~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~v 74 (144)
T cd07400 1 ILHLSDLHFGPERKPEL-----LALLSLLDRLLAEIKALDPDLVVITGDLTQR-GLPEEFEEAREFLDALPAPLEPVLVV 74 (144)
T ss_pred CeEeCccCCCCCcchhH-----HHHHHHHHHHHHHHhccCCCEEEECCCCCCC-CCHHHHHHHHHHHHHccccCCcEEEe
Confidence 57899999875421100 0011112233322 2679999999999974 4456666666666555433 466543
Q ss_pred EEEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHH
Q 008327 366 RYSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLW 445 (570)
Q Consensus 366 ~YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~ 445 (570)
+ .++|. |+++|+|+ +..... .... . . .++.+.+++
T Consensus 75 ~--------------GNHD~-------------------------iv~~Hhp~-~~~~~~-~~~~-~--~-~~~~~~~~l 109 (144)
T cd07400 75 P--------------GNHDV-------------------------IVVLHHPL-VPPPGS-GRER-L--L-DAGDALKLL 109 (144)
T ss_pred C--------------CCCeE-------------------------EEEecCCC-CCCCcc-cccc-C--C-CHHHHHHHH
Confidence 2 23332 88888888 544321 1111 1 1 368899999
Q ss_pred HHCCCeEEEeCCcccccee
Q 008327 446 QKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 446 ~ky~VdlvlsGH~H~YeRt 464 (570)
.+++++++++||.|.....
T Consensus 110 ~~~~~~~~l~GH~H~~~~~ 128 (144)
T cd07400 110 AEAGVDLVLHGHKHVPYVG 128 (144)
T ss_pred HHcCCCEEEECCCCCcCee
Confidence 9999999999999986533
No 26
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.88 E-value=7.4e-08 Score=95.90 Aligned_cols=147 Identities=15% Similarity=0.188 Sum_probs=93.0
Q ss_pred CeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeE
Q 008327 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYM 363 (570)
Q Consensus 286 ~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m 363 (570)
.-|+++++|.|.+ ...++++++.. .++|+|+++||+++..........+++.+..+ .+|.+
T Consensus 4 ~~kIl~iSDiHgn---------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~ 66 (224)
T cd07388 4 VRYVLATSNPKGD---------------LEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA--HLPTF 66 (224)
T ss_pred eeEEEEEEecCCC---------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCceE
Confidence 4689999999853 23445554432 57999999999997432344444555554322 23454
Q ss_pred EEE--------------E---------------EEEE-CCEEEEEEeCCCCC--CCCHHHH----HHHHH-HHhcccCCC
Q 008327 364 IAR--------------Y---------------STDY-GMFRFCIADTEQDW--REGTEQY----RFIEH-CLASVDRQK 406 (570)
Q Consensus 364 ~~~--------------Y---------------Sfd~-G~vhFi~LDTe~~~--~~g~~Q~----~WLe~-dL~~~~r~~ 406 (570)
.++ | ...+ |++.|+.|+..... ...++|. .||.+ .|+...+..
T Consensus 67 ~V~GNhD~~v~~~l~~~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~~ 146 (224)
T cd07388 67 YVPGPQDAPLWEYLREAYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELK 146 (224)
T ss_pred EEcCCCChHHHHHHHHHhcccccCccceecCCCeEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhCC
Confidence 444 2 2345 55899999865432 2344552 56533 222222123
Q ss_pred CCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcc
Q 008327 407 QPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVH 459 (570)
Q Consensus 407 ~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H 459 (570)
.+..|++.|+|+ |..+. . ..+.+.+..++++++..++++||+|
T Consensus 147 ~~~~VLv~H~PP-~g~g~--~-------h~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 147 DYRKVFLFHTPP-YHKGL--N-------EQGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred CCCeEEEECCCC-CCCCC--C-------ccCHHHHHHHHHHhCCCEEEEcCCc
Confidence 456899999999 77632 1 1236799999999999999999999
No 27
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.87 E-value=3.8e-08 Score=98.81 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=91.6
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEE
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIA 365 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~ 365 (570)
||+.++|+|.... .+ . ..+.++++++.. .++|+|+++||++... .+..++++.+..+ ..+|.+.+
T Consensus 1 ki~~iSDlH~~~~----~~---~--~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~---~~~~~~~~~l~~~-~~~pv~~v 67 (239)
T TIGR03729 1 KIAFSSDLHIDLN----HF---D--TEEMLETLAQYLKKQKIDHLHIAGDISNDF---QRSLPFIEKLQEL-KGIKVTFN 67 (239)
T ss_pred CEEEEEeecCCCC----CC---C--HHHHHHHHHHHHHhcCCCEEEECCccccch---hhHHHHHHHHHHh-cCCcEEEE
Confidence 5899999997421 11 1 112233443322 5799999999999532 2223444444332 23566555
Q ss_pred E-----E----------------------EEEECCEEEEEEeCCCC--------------------------CC-----C
Q 008327 366 R-----Y----------------------STDYGMFRFCIADTEQD--------------------------WR-----E 387 (570)
Q Consensus 366 ~-----Y----------------------Sfd~G~vhFi~LDTe~~--------------------------~~-----~ 387 (570)
+ | .+..++++|+.++.-.+ +. .
T Consensus 68 ~GNHD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 147 (239)
T TIGR03729 68 AGNHDMLKDLTYEEIESNDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPER 147 (239)
T ss_pred CCCCCCCCCCCHHHHHhccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHH
Confidence 4 1 11227899999983111 11 1
Q ss_pred CHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCC-CC---CcchhHHHHHHHHHHCCCeEEEeCCccccc
Q 008327 388 GTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEG-SF---AEPMGRESLQKLWQKYKVDIAVFGHVHNYE 462 (570)
Q Consensus 388 g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g-~~---~~~~~r~~l~~L~~ky~VdlvlsGH~H~Ye 462 (570)
..+|++||++.|++.. .. .+|++.|+|+ .......+.+. .+ ....+...|+.++++++|+++++||.|.-.
T Consensus 148 ~~~~l~~l~~~l~~~~--~~-~~ivvtH~pP-~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 148 TAIVLKQLKKQLNQLD--NK-QVIFVTHFVP-HRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHHHHHHHHHhcC--CC-CEEEEEcccc-hHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECCccCCC
Confidence 2678999999998752 22 3788888876 32100000000 00 001225789999999999999999999754
No 28
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.82 E-value=7.5e-08 Score=94.99 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=95.8
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEE
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMI 364 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~ 364 (570)
+||++++|+|..... ..+.++++++. ..++|+|+++||+++...... +.+.+.++.+....|.+.
T Consensus 2 ~~i~~~sDlH~~~~~-----------~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l~~~~~v~~ 68 (223)
T cd07385 2 LRIAHLSDLHLGPFV-----------SRERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKLKAPLGVYA 68 (223)
T ss_pred CEEEEEeecCCCccC-----------CHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhccCCCCCEEE
Confidence 799999999986431 11223333332 257999999999997543322 345555555555677777
Q ss_pred EE-----------------------------EEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEec
Q 008327 365 AR-----------------------------YSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAH 415 (570)
Q Consensus 365 ~~-----------------------------YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H 415 (570)
+. ..++.++..+.+.-- .....+.+++.+.+++. .+....|++.|
T Consensus 69 v~GNHD~~~~~~~~~~~~l~~~~v~~L~~~~~~~~~~~~~i~i~G~----~~~~~~~~~~~~~~~~~--~~~~~~I~l~H 142 (223)
T cd07385 69 VLGNHDYYSGDEENWIEALESAGITVLRNESVEISVGGATIGIAGV----DDGLGRRPDLEKALKGL--DEDDPNILLAH 142 (223)
T ss_pred ECCCcccccCchHHHHHHHHHcCCEEeecCcEEeccCCeEEEEEec----cCccccCCCHHHHHhCC--CCCCCEEEEec
Confidence 66 111222211111110 01123345677777664 33457899999
Q ss_pred cccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccce--eccc---CcccccCCCCCeEEE
Q 008327 416 RVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQNI--CTNK---EKHYYKGSLNGTIHI 490 (570)
Q Consensus 416 ~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~--~~~~---~~~~y~~~~~g~vyI 490 (570)
.|. + .+.+ .+.++|++++||.|..|...|..... |... ....|. ..+..+||
T Consensus 143 ~P~-~-----------------~~~~----~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~V 199 (223)
T cd07385 143 QPD-T-----------------AEEA----AAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYDYGLYR-KGGSQLYV 199 (223)
T ss_pred CCC-h-----------------hHHh----cccCccEEEeccCCCCEEeccccccccchhhcCcccceEEE-ECCEEEEE
Confidence 985 1 1111 46799999999999998776654331 1111 112222 34557777
Q ss_pred EeCCCCC
Q 008327 491 AAGGAGA 497 (570)
Q Consensus 491 v~G~aG~ 497 (570)
..|.|..
T Consensus 200 s~G~G~~ 206 (223)
T cd07385 200 SRGLGTW 206 (223)
T ss_pred cCCccCC
Confidence 7766553
No 29
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.74 E-value=5.3e-07 Score=92.67 Aligned_cols=178 Identities=14% Similarity=0.179 Sum_probs=102.6
Q ss_pred CCCeEEEEEecCCCCCCCCCCccccccc---------chHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhc
Q 008327 284 DSLQQVIIFGDMGKDEADGSNEYNNFQR---------GSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIE 354 (570)
Q Consensus 284 ~~~~rf~v~GD~g~~~~~g~~~~~~~q~---------~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~ 354 (570)
+..||++-+.|||.+...++ ...+..| ...+.++++++ .++||||+++||+++.......-.-+++.++
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~-~c~d~~p~~~~~csD~nTt~F~~rvL~-sE~PDlVVfTGD~i~g~~t~Da~~sl~kAva 128 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRET-RCRDVLPSEEACCSDLNTTNFVSRVLA-SEKPDLVVFTGDNIFGHSTQDAATSLMKAVA 128 (379)
T ss_pred CCceEEEEeeccccccCCCc-cccccCcchhhhhcCccHHHHHHHHHh-ccCCCEEEEeCCcccccccHhHHHHHHHHhh
Confidence 45699999999999865222 1112112 12234566665 4899999999999987433222234566677
Q ss_pred c-cccCCCeEEEE-----------------------------------EEE-EECC------------------EEEEEE
Q 008327 355 P-IASTVPYMIAR-----------------------------------YST-DYGM------------------FRFCIA 379 (570)
Q Consensus 355 ~-~~s~vP~m~~~-----------------------------------YSf-d~G~------------------vhFi~L 379 (570)
| +...+||.+.. |-+ .+|+ ..+++|
T Consensus 129 P~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfl 208 (379)
T KOG1432|consen 129 PAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFL 208 (379)
T ss_pred hHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEE
Confidence 6 45689998777 311 1232 223455
Q ss_pred eCCCC-----C-----CCCHHHHHHHHHHHhc---ccCCCCC-EEEEEeccccc-cCCCC----ccc--cCCCCCcchhH
Q 008327 380 DTEQD-----W-----REGTEQYRFIEHCLAS---VDRQKQP-WLIFLAHRVLG-YSSDL----SYA--VEGSFAEPMGR 438 (570)
Q Consensus 380 DTe~~-----~-----~~g~~Q~~WLe~dL~~---~~r~~~p-wvIv~~H~P~~-yss~~----~~~--~~g~~~~~~~r 438 (570)
|+..+ + .....|.+||+..-.. .+..-.| -=.++.|.|+. |..-. .-+ .++...... .
T Consensus 209 d~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~-~ 287 (379)
T KOG1432|consen 209 DSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKH-N 287 (379)
T ss_pred ecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeecccccccc-c
Confidence 55422 1 1257899999887622 1222233 45788999872 11100 000 111111122 3
Q ss_pred HHHHHHHH-HCCCeEEEeCCcccccee
Q 008327 439 ESLQKLWQ-KYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 439 ~~l~~L~~-ky~VdlvlsGH~H~YeRt 464 (570)
..+...|. .-+|+.||+||+|...--
T Consensus 288 sg~~~~L~~r~~Vk~vf~GHdHvNDfC 314 (379)
T KOG1432|consen 288 SGFLTTLVNRGNVKGVFCGHDHVNDFC 314 (379)
T ss_pred cHHHHHHHhccCcceEEecccccccee
Confidence 56666666 789999999999986543
No 30
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.69 E-value=9.7e-08 Score=90.17 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=70.8
Q ss_pred CCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEE----EEEEECCEEEEEEeCCCCCCC-CHHHHHHHHHHH
Q 008327 325 KNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIAR----YSTDYGMFRFCIADTEQDWRE-GTEQYRFIEHCL 399 (570)
Q Consensus 325 ~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~----YSfd~G~vhFi~LDTe~~~~~-g~~Q~~WLe~dL 399 (570)
.++|+++++||+++.. ....|.. .........|.+.++ |. +.|+..---.++.. ++++.+|+.+|+
T Consensus 25 ~~~d~li~~GDi~~~~-~~~~~~~---~~~~~~~~~~v~~v~GNHD~~-----~~~~G~~~w~~~~~~~~~~~~~~~~d~ 95 (166)
T cd07404 25 PDADILVLAGDIGYLT-DAPRFAP---LLLALKGFEPVIYVPGNHEFY-----VRIIGTTLWSDISLFGEAAARMRMNDF 95 (166)
T ss_pred CCCCEEEECCCCCCCc-chHHHHH---HHHhhcCCccEEEeCCCcceE-----EEEEeeecccccCccchHHHHhCCCCC
Confidence 6899999999999643 2233322 222223456766655 33 56666532223322 345666666665
Q ss_pred hcccCCCCCEEEEEeccccccCCCC-ccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccc
Q 008327 400 ASVDRQKQPWLIFLAHRVLGYSSDL-SYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYE 462 (570)
Q Consensus 400 ~~~~r~~~pwvIv~~H~P~~yss~~-~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Ye 462 (570)
+ +.+|+++|+|+ +.... +....+.. ....++.+..++++++|+++++||.|...
T Consensus 96 ~-------~~~vv~~HhpP-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 96 R-------GKTVVVTHHAP-SPLSLAPQYGDSLV-NAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred C-------CCEEEEeCCCC-CccccCccccCCCc-chhhhhccHhHHhhcCCCEEEECCccccc
Confidence 5 24788888888 65432 11111111 11225668888899999999999999764
No 31
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.62 E-value=3.2e-07 Score=90.09 Aligned_cols=164 Identities=11% Similarity=0.093 Sum_probs=89.4
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecCC-chhHHHHHHHhhcccc-cCCCeE
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYANG-YISQWDQFTAQIEPIA-STVPYM 363 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g-~~~~wd~f~~~i~~~~-s~vP~m 363 (570)
||+.++|+|.+.......-........++++++++.. .++|+|+++||++.... ....+..+.+.++.+. ..+|.+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 6899999998754211100000111234556655432 58999999999986543 2334555555555443 366776
Q ss_pred EEE-----E------------------------------EEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCC
Q 008327 364 IAR-----Y------------------------------STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQP 408 (570)
Q Consensus 364 ~~~-----Y------------------------------Sfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~p 408 (570)
++. + .++.+.+.|+.++..... ....+.++++..+... .+..
T Consensus 81 ~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 157 (223)
T cd00840 81 IIAGNHDSPSRLGALSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRPL--DPDD 157 (223)
T ss_pred EecCCCCCccccccccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhcc--CCCC
Confidence 665 0 001122344444432111 1123444555555543 3456
Q ss_pred EEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccce
Q 008327 409 WLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 463 (570)
Q Consensus 409 wvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeR 463 (570)
..|++.|.|+ ...... .. .. .......+.+.++|++++||.|..+.
T Consensus 158 ~~Il~~H~~~-~~~~~~---~~---~~--~~~~~~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 158 FNILLLHGGV-AGAGPS---DS---ER--APFVPEALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred cEEEEEeeee-ecCCCC---cc---cc--cccCcHhhcCcCCCEEECCCcccCee
Confidence 7899999997 433210 00 00 12344445678899999999998653
No 32
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.43 E-value=3.1e-06 Score=78.19 Aligned_cols=147 Identities=18% Similarity=0.322 Sum_probs=85.1
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEE
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIAR 366 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~ 366 (570)
+||+++||.|... ..++++++..+++|+|+++||++.. .++++.++.+ |
T Consensus 1 Mki~~~sD~H~~~---------------~~~~~~~~~~~~~d~vi~~GDi~~~-------~~~~~~~~~~----~----- 49 (156)
T PF12850_consen 1 MKIAVISDLHGNL---------------DALEAVLEYINEPDFVIILGDIFDP-------EEVLELLRDI----P----- 49 (156)
T ss_dssp EEEEEEE--TTTH---------------HHHHHHHHHHTTESEEEEES-SCSH-------HHHHHHHHHH----E-----
T ss_pred CEEEEEeCCCCCh---------------hHHHHHHHHhcCCCEEEECCCchhH-------HHHHHHHhcC----C-----
Confidence 5899999998742 2345555555679999999999752 3444444332 2
Q ss_pred EEEEECCEEEEEEeCCCCCCCCHHHHHHHHHH-----Hhcc-cCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHH
Q 008327 367 YSTDYGMFRFCIADTEQDWREGTEQYRFIEHC-----LASV-DRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRES 440 (570)
Q Consensus 367 YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~d-----L~~~-~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~ 440 (570)
++++..+++.. ++.+. +... ...-..+.|++.|.+. +... .. .+.
T Consensus 50 ---------~~~v~GNHD~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~H~~~-~~~~-----------~~-~~~ 100 (156)
T PF12850_consen 50 ---------VYVVRGNHDNW-------AFPNENDEEYLLDALRLTIDGFKILLSHGHP-YDVQ-----------WD-PAE 100 (156)
T ss_dssp ---------EEEE--CCHST-------HHHSEECTCSSHSEEEEEETTEEEEEESSTS-SSST-----------TT-HHH
T ss_pred ---------EEEEeCCcccc-------cchhhhhccccccceeeeecCCeEEEECCCC-cccc-----------cC-hhh
Confidence 23444555421 11111 1111 1122357899999876 4321 11 456
Q ss_pred HHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEE
Q 008327 441 LQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFV 520 (570)
Q Consensus 441 l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~ 520 (570)
+..++.+.+++++++||.|...... .+++.++..|+-+.... .+ .-+|.
T Consensus 101 ~~~~~~~~~~~~~~~GH~H~~~~~~------------------~~~~~~~~~Gs~~~~~~------------~~-~~~~~ 149 (156)
T PF12850_consen 101 LREILSRENVDLVLHGHTHRPQVFK------------------IGGIHVINPGSIGGPRH------------GD-QSGYA 149 (156)
T ss_dssp HHHHHHHTTSSEEEESSSSSEEEEE------------------ETTEEEEEE-GSSS-SS------------SS-SEEEE
T ss_pred hhhhhcccCCCEEEcCCcccceEEE------------------ECCEEEEECCcCCCCCC------------CC-CCEEE
Confidence 7788889999999999999876542 25677888887665321 01 34788
Q ss_pred EEEE
Q 008327 521 KLTA 524 (570)
Q Consensus 521 ~v~~ 524 (570)
.+++
T Consensus 150 i~~~ 153 (156)
T PF12850_consen 150 ILDI 153 (156)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
No 33
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.38 E-value=4.8e-06 Score=73.24 Aligned_cols=96 Identities=27% Similarity=0.367 Sum_probs=62.5
Q ss_pred cCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEEEEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhccc
Q 008327 324 LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIARYSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVD 403 (570)
Q Consensus 324 ~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~ 403 (570)
..++|+|+++||+++.... ..+..+...........|++ .+-.+++
T Consensus 24 ~~~~~~vi~~GD~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------~~~GNHD------------------- 69 (131)
T cd00838 24 AEKPDFVLVLGDLVGDGPD-PEEVLAAALALLLLLGIPVY--------------VVPGNHD------------------- 69 (131)
T ss_pred ccCCCEEEECCcccCCCCC-chHHHHHHHHHhhcCCCCEE--------------EeCCCce-------------------
Confidence 4789999999999985443 33333332222233445554 3333443
Q ss_pred CCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceee
Q 008327 404 RQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERIC 465 (570)
Q Consensus 404 r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~ 465 (570)
|++.|.|+ +..... .... ... .++.+..++.+++++++|+||.|.+.+..
T Consensus 70 -------i~~~H~~~-~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 -------ILLTHGPP-YDPLDE-LSPD--EDP-GSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred -------EEEeccCC-CCCchh-hccc--chh-hHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 99999998 554321 1111 011 26889999999999999999999998874
No 34
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.28 E-value=2.5e-05 Score=80.15 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=43.6
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCe
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPY 362 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~ 362 (570)
.++|+++++|.|.+... + ...++++++. ..+||+|+++||++..+ ....++.+.+.++.+.+..|.
T Consensus 48 ~~~rI~~lSDlH~~~~~---------~--~~~l~~~v~~i~~~~pDlVli~GD~~d~~-~~~~~~~~~~~L~~L~~~~pv 115 (271)
T PRK11340 48 APFKILFLADLHYSRFV---------P--LSLISDAIALGIEQKPDLILLGGDYVLFD-MPLNFSAFSDVLSPLAECAPT 115 (271)
T ss_pred CCcEEEEEcccCCCCcC---------C--HHHHHHHHHHHHhcCCCEEEEccCcCCCC-ccccHHHHHHHHHHHhhcCCE
Confidence 35999999999975321 1 1223333332 25899999999998522 222345566666666555677
Q ss_pred EEEE
Q 008327 363 MIAR 366 (570)
Q Consensus 363 m~~~ 366 (570)
+.+.
T Consensus 116 ~~V~ 119 (271)
T PRK11340 116 FACF 119 (271)
T ss_pred EEec
Confidence 6665
No 35
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.18 E-value=5.1e-05 Score=70.61 Aligned_cols=153 Identities=17% Similarity=0.240 Sum_probs=85.8
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEEE
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIARY 367 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~Y 367 (570)
|+++++|.|... ..++++++..+++|.|+++||++.... ... +....|++.
T Consensus 1 ~i~~isD~H~~~---------------~~~~~~~~~~~~~d~ii~~GD~~~~~~-~~~----------~~~~~~~~~--- 51 (155)
T cd00841 1 KIGVISDTHGSL---------------ELLEKALELFGDVDLIIHAGDVLYPGP-LNE----------LELKAPVIA--- 51 (155)
T ss_pred CEEEEecCCCCH---------------HHHHHHHHHhcCCCEEEECCccccccc-cch----------hhcCCcEEE---
Confidence 588999998531 345566666556999999999986432 111 112223332
Q ss_pred EEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcc-cCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHH
Q 008327 368 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASV-DRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQ 446 (570)
Q Consensus 368 Sfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~-~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ 446 (570)
+-.|+|.... + ..|... .-.-..++|++.|.+. +.... . .+. ..++.
T Consensus 52 -----------V~GNhD~~~~------~-~~~p~~~~~~~~g~~i~v~Hg~~-~~~~~-----~-------~~~-~~~~~ 99 (155)
T cd00841 52 -----------VRGNCDGEVD------F-PILPEEAVLEIGGKRIFLTHGHL-YGVKN-----G-------LDR-LYLAK 99 (155)
T ss_pred -----------EeCCCCCcCC------c-ccCCceEEEEECCEEEEEECCcc-ccccc-----c-------hhh-hhhhh
Confidence 2223332110 0 011100 0011235789999887 43311 0 112 55667
Q ss_pred HCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEec
Q 008327 447 KYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFD 526 (570)
Q Consensus 447 ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n 526 (570)
+.++|++++||.|...... .+++.+|-.|+.|.... ....+|..+++ +
T Consensus 100 ~~~~d~vi~GHtH~~~~~~------------------~~~~~~inpGs~~~~~~-------------~~~~~~~i~~~-~ 147 (155)
T cd00841 100 EGGADVVLYGHTHIPVIEK------------------IGGVLLLNPGSLSLPRG-------------GGPPTYAILEI-D 147 (155)
T ss_pred hcCCCEEEECcccCCccEE------------------ECCEEEEeCCCccCcCC-------------CCCCeEEEEEe-c
Confidence 7899999999999754321 24677888888776421 12347888887 4
Q ss_pred CCeEEEEE
Q 008327 527 HSNLLFEY 534 (570)
Q Consensus 527 ~t~L~~~~ 534 (570)
+ ++++++
T Consensus 148 ~-~~~~~~ 154 (155)
T cd00841 148 D-KGEVEI 154 (155)
T ss_pred C-CCcEEE
Confidence 4 566654
No 36
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.11 E-value=0.00033 Score=68.92 Aligned_cols=154 Identities=18% Similarity=0.358 Sum_probs=93.0
Q ss_pred CeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecC-CchhHHHHHHHhhcccc-cCCC
Q 008327 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYAN-GYISQWDQFTAQIEPIA-STVP 361 (570)
Q Consensus 286 ~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~-g~~~~wd~f~~~i~~~~-s~vP 361 (570)
.+|++++.|.|... ..+++++... .++|+++.+||++|.. +...+-.+-.. ++.+. ..+|
T Consensus 3 ~mkil~vtDlHg~~---------------~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~-~e~l~~~~~~ 66 (226)
T COG2129 3 KMKILAVTDLHGSE---------------DSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNK-LEALKELGIP 66 (226)
T ss_pred cceEEEEeccccch---------------HHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhH-HHHHHhcCCe
Confidence 47999999998643 2233433322 4899999999999432 21111111000 23332 4567
Q ss_pred eEEEE---------------------EEEEECCEEEEEEeCC--CCC----CCCHHH-HHHHHHHHhcccCCCCCEEEEE
Q 008327 362 YMIAR---------------------YSTDYGMFRFCIADTE--QDW----REGTEQ-YRFIEHCLASVDRQKQPWLIFL 413 (570)
Q Consensus 362 ~m~~~---------------------YSfd~G~vhFi~LDTe--~~~----~~g~~Q-~~WLe~dL~~~~r~~~pwvIv~ 413 (570)
.+..+ -+.+.|++.|+.+--. +.| ...+++ +.-|++-+++.+ .+-.|+.
T Consensus 67 v~avpGNcD~~~v~~~l~~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~---~~~~Il~ 143 (226)
T COG2129 67 VLAVPGNCDPPEVIDVLKNAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD---NPVNILL 143 (226)
T ss_pred EEEEcCCCChHHHHHHHHhcccccccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc---CcceEEE
Confidence 77776 4677888888885321 222 222333 344555555432 1223999
Q ss_pred eccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccc
Q 008327 414 AHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYE 462 (570)
Q Consensus 414 ~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Ye 462 (570)
.|.|+ |..... ...+ ....+...+..++++.++-+.++||.|.+.
T Consensus 144 ~HaPP-~gt~~d-~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~ 188 (226)
T COG2129 144 THAPP-YGTLLD-TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESR 188 (226)
T ss_pred ecCCC-CCcccc-CCCC--ccccchHHHHHHHHHhCCceEEEeeecccc
Confidence 99999 877542 1111 124567899999999999999999999854
No 37
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.08 E-value=0.00016 Score=67.84 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=81.9
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEE
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIAR 366 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~ 366 (570)
+|+++++|+|.... .++.+.++++...++|.|+|+||++- .. ..+.++.+ ..|++.
T Consensus 1 m~i~viSD~H~~~~------------~~~~~~~~~~~~~~~d~ii~~GD~~~----~~----~~~~l~~~--~~~~~~-- 56 (158)
T TIGR00040 1 MKILVISDTHGPLR------------ATELPVELFNLESNVDLVIHAGDLTS----PF----VLKEFEDL--AAKVIA-- 56 (158)
T ss_pred CEEEEEecccCCcc------------hhHhHHHHHhhccCCCEEEEcCCCCC----HH----HHHHHHHh--CCceEE--
Confidence 47999999985421 12344455554348999999999971 12 22222211 123332
Q ss_pred EEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHH
Q 008327 367 YSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQ 446 (570)
Q Consensus 367 YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ 446 (570)
+-.|+|.. ...|.+.. ...-..+.|++.|-.+ +... . . .+.++.+..
T Consensus 57 ------------V~GN~D~~----~~~~~~~~----~~~~~g~~i~l~Hg~~-~~~~------~----~--~~~l~~~~~ 103 (158)
T TIGR00040 57 ------------VRGNNDGE----RDELPEEE----IFEAEGIDFGLVHGDL-VYPR------G----D--LLVLEYLAK 103 (158)
T ss_pred ------------EccCCCch----hhhCCcce----EEEECCEEEEEEeCcc-cccC------C----C--HHHHHHHHh
Confidence 22233321 01111111 1112346788888764 2211 0 1 245666667
Q ss_pred HCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEec
Q 008327 447 KYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFD 526 (570)
Q Consensus 447 ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n 526 (570)
+.++|++++||.|.-.... .+++.++-.|+.|.... . ...+|..+++ +
T Consensus 104 ~~~~d~vi~GHtH~~~~~~------------------~~~~~~iNpGs~~~~~~----~---------~~~~~~il~~-~ 151 (158)
T TIGR00040 104 ELGVDVLIFGHTHIPVAEE------------------LRGILLINPGSLTGPRN----G---------NTPSYAILDV-D 151 (158)
T ss_pred ccCCCEEEECCCCCCccEE------------------ECCEEEEECCccccccC----C---------CCCeEEEEEe-c
Confidence 7899999999999643210 14667776676554210 0 1347888887 4
Q ss_pred CCeE
Q 008327 527 HSNL 530 (570)
Q Consensus 527 ~t~L 530 (570)
++.+
T Consensus 152 ~~~~ 155 (158)
T TIGR00040 152 KDKV 155 (158)
T ss_pred CCeE
Confidence 4444
No 38
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.00 E-value=0.00051 Score=66.07 Aligned_cols=170 Identities=23% Similarity=0.339 Sum_probs=91.1
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEEE
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIARY 367 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~Y 367 (570)
++++++|+|...... .....+.+++++ .++|.|+|+||++. ...++.+ +.+. .|+..+
T Consensus 1 ~i~viSDtHl~~~~~---------~~~~~~~~~~~~-~~~d~iih~GDi~~----~~~~~~l-~~~~-----~~~~~V-- 58 (178)
T cd07394 1 LVLVIGDLHIPHRAS---------DLPAKFKKLLVP-GKIQHVLCTGNLCS----KETYDYL-KTIA-----PDVHIV-- 58 (178)
T ss_pred CEEEEEecCCCCCch---------hhHHHHHHHhcc-CCCCEEEECCCCCC----HHHHHHH-HhhC-----CceEEE--
Confidence 478999999654311 012234555554 57999999999975 2333322 2221 122211
Q ss_pred EEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH
Q 008327 368 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK 447 (570)
Q Consensus 368 Sfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k 447 (570)
.||..+.. .+ + ++ ... .-..++|++.|--. +... . . .+.+..++++
T Consensus 59 ---~GN~D~~~-----~l-p--~~--------~~~--~~~g~~i~l~HG~~-~~~~------~----~--~~~~~~~~~~ 104 (178)
T cd07394 59 ---RGDFDENL-----NY-P--ET--------KVI--TVGQFKIGLIHGHQ-VVPW------G----D--PDSLAALQRQ 104 (178)
T ss_pred ---ECCCCccc-----cC-C--Cc--------EEE--EECCEEEEEEECCc-CCCC------C----C--HHHHHHHHHh
Confidence 23322110 00 0 00 011 11346788888543 2211 0 0 3456667778
Q ss_pred CCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEecC
Q 008327 448 YKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFDH 527 (570)
Q Consensus 448 y~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n~ 527 (570)
.++|++++||.|...... .+|..++--|+.|....+. . ......|+++++ +.
T Consensus 105 ~~~dvii~GHTH~p~~~~------------------~~g~~viNPGSv~~~~~~~-----~----~~~~~syail~~-~~ 156 (178)
T cd07394 105 LDVDILISGHTHKFEAFE------------------HEGKFFINPGSATGAFSPL-----D----PNVIPSFVLMDI-QG 156 (178)
T ss_pred cCCCEEEECCCCcceEEE------------------ECCEEEEECCCCCCCCCCC-----C----CCCCCeEEEEEe-cC
Confidence 899999999999754321 2467777778777532211 0 011236888887 66
Q ss_pred CeEEEEEEECCCCc
Q 008327 528 SNLLFEYKKSRDGK 541 (570)
Q Consensus 528 t~L~~~~~~~~dG~ 541 (570)
..+.++++.-.+++
T Consensus 157 ~~~~~~~~~l~~~~ 170 (178)
T cd07394 157 SKVVTYVYQLIDGE 170 (178)
T ss_pred CeEEEEEEEEECCc
Confidence 67788877544444
No 39
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.00 E-value=7.2e-05 Score=68.25 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=70.5
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEEE
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIARY 367 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~Y 367 (570)
||++++|.|.... .+ ...++|+++++||++.. +...+++.+.+.++.+. .|.
T Consensus 1 ~i~~isD~H~~~~-------------------~~-~~~~~D~vi~~GD~~~~-~~~~~~~~~~~~l~~~~--~~~----- 52 (135)
T cd07379 1 RFVCISDTHSRHR-------------------TI-SIPDGDVLIHAGDLTER-GTLEELQKFLDWLKSLP--HPH----- 52 (135)
T ss_pred CEEEEeCCCCCCC-------------------cC-cCCCCCEEEECCCCCCC-CCHHHHHHHHHHHHhCC--CCe-----
Confidence 5899999985420 11 22579999999999853 44444445555444331 121
Q ss_pred EEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH
Q 008327 368 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK 447 (570)
Q Consensus 368 Sfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k 447 (570)
++.+-.++++... ...+.|++.|.|+ +..... .... ...+.+.+..++++
T Consensus 53 --------~~~v~GNHD~~~~-----------------~~~~~ilv~H~~p-~~~~~~-~~~~---~~~g~~~~~~~~~~ 102 (135)
T cd07379 53 --------KIVIAGNHDLTLD-----------------PEDTDILVTHGPP-YGHLDL-VSSG---QRVGCEELLNRVQR 102 (135)
T ss_pred --------EEEEECCCCCcCC-----------------CCCCEEEEECCCC-CcCccc-cccC---cccCCHHHHHHHHH
Confidence 1224445553211 1234688899998 765421 1100 11224678888899
Q ss_pred CCCeEEEeCCccccc
Q 008327 448 YKVDIAVFGHVHNYE 462 (570)
Q Consensus 448 y~VdlvlsGH~H~Ye 462 (570)
++++++++||.|...
T Consensus 103 ~~~~~~i~GH~H~~~ 117 (135)
T cd07379 103 VRPKLHVFGHIHEGY 117 (135)
T ss_pred HCCcEEEEcCcCCcC
Confidence 999999999999763
No 40
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.80 E-value=0.00045 Score=68.05 Aligned_cols=148 Identities=19% Similarity=0.272 Sum_probs=83.2
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHH-------------------
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWD------------------- 347 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd------------------- 347 (570)
-++++++|..... ..++.+..++.+ ..+|+|+.+||+.-+.....+|.
T Consensus 6 ~kilA~s~~~g~~------------e~l~~l~~~~~e-~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~ 72 (255)
T PF14582_consen 6 RKILAISNFRGDF------------ELLERLVEVIPE-KGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEEC 72 (255)
T ss_dssp -EEEEEE--TT-H------------HHHHHHHHHHHH-HT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHH
T ss_pred hhheeecCcchHH------------HHHHHHHhhccc-cCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhh
Confidence 4788998885321 234455555555 48999999999987655555565
Q ss_pred -------HHHHhhcccccCCCeEEEE------------------------------EEEEECCEEEEEEeCCC---CCCC
Q 008327 348 -------QFTAQIEPIASTVPYMIAR------------------------------YSTDYGMFRFCIADTEQ---DWRE 387 (570)
Q Consensus 348 -------~f~~~i~~~~s~vP~m~~~------------------------------YSfd~G~vhFi~LDTe~---~~~~ 387 (570)
.|++.+.. ..+|.++.+ +.+--|.+-|+.+-.+- ....
T Consensus 73 ~~~e~~~~ff~~L~~--~~~p~~~vPG~~Dap~~~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~ 150 (255)
T PF14582_consen 73 YDSEALDKFFRILGE--LGVPVFVVPGNMDAPERFFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREE 150 (255)
T ss_dssp HHHHHHHHHHHHHHC--C-SEEEEE--TTS-SHHHHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BC
T ss_pred hhHHHHHHHHHHHHh--cCCcEEEecCCCCchHHHHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCccc
Confidence 67777653 357888777 33444568888876541 1111
Q ss_pred ------CHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccc
Q 008327 388 ------GTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNY 461 (570)
Q Consensus 388 ------g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Y 461 (570)
-....+|..+-|..+ +..-+|+..|.|+-+..+ . ...+.+.+..|+++|+.++||+||+|.-
T Consensus 151 ~~~LrYP~weaey~lk~l~el---k~~r~IlLfhtpPd~~kg------~---~h~GS~~V~dlIk~~~P~ivl~Ghihe~ 218 (255)
T PF14582_consen 151 EFKLRYPAWEAEYSLKFLREL---KDYRKILLFHTPPDLHKG------L---IHVGSAAVRDLIKTYNPDIVLCGHIHES 218 (255)
T ss_dssp SSS-EEEHHHHHHHHGGGGGC---TSSEEEEEESS-BTBCTC------T---BTTSBHHHHHHHHHH--SEEEE-SSS-E
T ss_pred cccccchHHHHHHHHHHHHhc---ccccEEEEEecCCccCCC------c---ccccHHHHHHHHHhcCCcEEEecccccc
Confidence 022344555555553 344688889999711111 0 1223578999999999999999999964
No 41
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.80 E-value=0.00013 Score=73.33 Aligned_cols=159 Identities=16% Similarity=0.244 Sum_probs=83.7
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHH-hcCCccEEEEcCceeecC-Cc---hhHHHHHHHhhcccccC-C
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYAN-GY---ISQWDQFTAQIEPIAST-V 360 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~-~~~~~Dfvl~~GDi~Y~~-g~---~~~wd~f~~~i~~~~s~-v 360 (570)
+|+++++|+|.+... +...+.+.+.++ ...++|+|+++||+...- |. ........+.++.+... +
T Consensus 1 M~i~~iSDlHl~~~~---------~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~ 71 (241)
T PRK05340 1 MPTLFISDLHLSPER---------PAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGV 71 (241)
T ss_pred CcEEEEeecCCCCCC---------hhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCC
Confidence 378999999986431 111122222222 225799999999999531 11 11123334444444333 5
Q ss_pred CeEEEE-----------------------EEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccc
Q 008327 361 PYMIAR-----------------------YSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRV 417 (570)
Q Consensus 361 P~m~~~-----------------------YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P 417 (570)
|.+.+. ..++.++.++++.-... +...+..|+++++.+.+ ||.....|.+
T Consensus 72 ~v~~v~GNHD~~~~~~~~~~~g~~~l~~~~~~~~~g~~i~l~HGd~-~~~~d~~y~~~r~~~r~------~~~~~~~~~~ 144 (241)
T PRK05340 72 PCYFMHGNRDFLLGKRFAKAAGMTLLPDPSVIDLYGQRVLLLHGDT-LCTDDKAYQRFRRKVRN------PWLQWLFLAL 144 (241)
T ss_pred eEEEEeCCCchhhhHHHHHhCCCEEeCCcEEEEECCEEEEEECCcc-cccCCHHHHHHHHHHhC------HHHHHHHHhC
Confidence 655544 33555666555553221 12234666666666554 2334444444
Q ss_pred cccCCCCc------------cc-cCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccce
Q 008327 418 LGYSSDLS------------YA-VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 463 (570)
Q Consensus 418 ~~yss~~~------------~~-~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeR 463 (570)
+ +....+ .. ....+... ..+.+.+++.+++++++++||.|....
T Consensus 145 p-~~~~~~ia~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~GH~H~~~~ 201 (241)
T PRK05340 145 P-LSIRLRIAAKMRAKSKAANQSKSLEIMDV-NPEAVAALMEKHGVDTLIHGHTHRPAI 201 (241)
T ss_pred C-HHHHHHHHHHHHHHHHHhcCCCcccccCC-CHHHHHHHHHHhCCCEEEECcccCcce
Confidence 3 321100 00 00011111 146788999999999999999997654
No 42
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.73 E-value=0.00028 Score=64.16 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=34.1
Q ss_pred EEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 410 LIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 410 vIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
.|++.|+|+ +.... ..+ . ...+.+.+..++.+++++++|+||.|.....
T Consensus 58 ~Ilv~H~pp-~~~~~--~~~--~-~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPP-AGIGD--GED--F-AHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCC-CcCcC--ccc--c-cccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 588888887 54321 111 1 1123678889999999999999999976544
No 43
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.57 E-value=0.0002 Score=69.76 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=65.4
Q ss_pred CCccEEEEcCceeecCCc--hhHHHHHHHhhcccccCCCeEEEEEEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcc
Q 008327 325 KNIDIVFHIGDICYANGY--ISQWDQFTAQIEPIASTVPYMIARYSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASV 402 (570)
Q Consensus 325 ~~~Dfvl~~GDi~Y~~g~--~~~wd~f~~~i~~~~s~vP~m~~~YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~ 402 (570)
.+||+|+++||++..+.. ..+|.++++.+..+.+..+ .+.++.+-.++|... +.....++.+++-
T Consensus 41 l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~-----------~~~~~~VpGNHDIG~--~~~~~~~~~v~RF 107 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPN-----------GTKIIYLPGDNDIGG--EEEDPIESKIRRF 107 (195)
T ss_pred cCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCC-----------CCcEEEECCCCCcCC--CCCCcCHHHHHHH
Confidence 579999999999976442 2345444444444332211 223345666776532 1112224444432
Q ss_pred cCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 403 DRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 403 ~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
+.-| |++.|.|+ .... ...+..++.+++++++|+||.|.+...
T Consensus 108 ---~~~F-i~lsH~P~-~~~~--------------~~~~~~~~~~~~p~~Ifs~H~H~s~~~ 150 (195)
T cd08166 108 ---EKYF-IMLSHVPL-LAEG--------------GQALKHVVTDLDPDLIFSAHRHKSSIF 150 (195)
T ss_pred ---HHhh-eeeecccc-cccc--------------cHHHHHHHHhcCceEEEEcCccceeeE
Confidence 1223 99999997 3211 237788889999999999999987654
No 44
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.50 E-value=0.0058 Score=61.46 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=25.0
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceee
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICY 338 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y 338 (570)
+|++++||.|.... . ... +.+++ .+||+|+++||++.
T Consensus 1 ~rIa~isDiHg~~~----------~---~~~-~~l~~-~~pD~Vl~~GDi~~ 37 (238)
T cd07397 1 LRIAIVGDVHGQWD----------L---EDI-KALHL-LQPDLVLFVGDFGN 37 (238)
T ss_pred CEEEEEecCCCCch----------H---HHH-HHHhc-cCCCEEEECCCCCc
Confidence 58999999995421 0 111 23332 57999999999984
No 45
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.46 E-value=0.0016 Score=67.32 Aligned_cols=71 Identities=7% Similarity=0.044 Sum_probs=44.7
Q ss_pred CCCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeE
Q 008327 284 DSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYM 363 (570)
Q Consensus 284 ~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m 363 (570)
...++++.++|+|.... +....+.+.++.+ ..+|+|+.+||++... ....+....+.++++.+..+.+
T Consensus 42 ~~~~~iv~lSDlH~~~~---------~~~~~~~~~~i~~--~~~DlivltGD~~~~~-~~~~~~~~~~~L~~L~~~~gv~ 109 (284)
T COG1408 42 LQGLKIVQLSDLHSLPF---------REEKLALLIAIAN--ELPDLIVLTGDYVDGD-RPPGVAALALFLAKLKAPLGVF 109 (284)
T ss_pred cCCeEEEEeehhhhchh---------hHHHHHHHHHHHh--cCCCEEEEEeeeecCC-CCCCHHHHHHHHHhhhccCCEE
Confidence 34689999999998642 1112334444444 4679999999999741 2233455555666666666666
Q ss_pred EEE
Q 008327 364 IAR 366 (570)
Q Consensus 364 ~~~ 366 (570)
.+.
T Consensus 110 av~ 112 (284)
T COG1408 110 AVL 112 (284)
T ss_pred EEe
Confidence 665
No 46
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.39 E-value=0.0028 Score=60.14 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=44.3
Q ss_pred CCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCC
Q 008327 406 KQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLN 485 (570)
Q Consensus 406 ~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~ 485 (570)
...-.||+.|.|+ ++.. ++ ...+..++++++|+.++.||.|--.|-.+-. ++-+
T Consensus 157 ~~~~fivM~HYPP-~s~~------~t------~~~~sevlee~rv~~~lyGHlHgv~~p~~~~-------------s~v~ 210 (230)
T COG1768 157 GVSKFIVMTHYPP-FSDD------GT------PGPFSEVLEEGRVSKCLYGHLHGVPRPNIGF-------------SNVR 210 (230)
T ss_pred CcCeEEEEEecCC-CCCC------CC------CcchHHHHhhcceeeEEeeeccCCCCCCCCc-------------cccc
Confidence 3456899999998 6653 21 2356777889999999999999876643211 1335
Q ss_pred CeEEEEeCCCC
Q 008327 486 GTIHIAAGGAG 496 (570)
Q Consensus 486 g~vyIv~G~aG 496 (570)
|+-|+.+-+-+
T Consensus 211 Gi~y~LvaaDy 221 (230)
T COG1768 211 GIEYMLVAADY 221 (230)
T ss_pred CceEEEEeccc
Confidence 77777775533
No 47
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=97.31 E-value=0.0018 Score=71.58 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=85.7
Q ss_pred HHHHHHHhcCCccEEEEcCceeecCCc-------hhHHHHHHHhhcccccCCCeEEEE----------------------
Q 008327 316 TTRQLIQDLKNIDIVFHIGDICYANGY-------ISQWDQFTAQIEPIASTVPYMIAR---------------------- 366 (570)
Q Consensus 316 t~~~i~~~~~~~Dfvl~~GDi~Y~~g~-------~~~wd~f~~~i~~~~s~vP~m~~~---------------------- 366 (570)
+++.|.+...++|||++.||++--+.. ........+.|......+|.+++.
T Consensus 200 ~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~~ 279 (577)
T KOG3770|consen 200 ALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHSQ 279 (577)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhhh
Confidence 445555444569999999999854321 111233445555556688888887
Q ss_pred ----------------------------EEE-EECCEEEEEEeCCCCC----------CCCHHHHHHHHHHHhcccCCCC
Q 008327 367 ----------------------------YST-DYGMFRFCIADTEQDW----------REGTEQYRFIEHCLASVDRQKQ 407 (570)
Q Consensus 367 ----------------------------YSf-d~G~vhFi~LDTe~~~----------~~g~~Q~~WLe~dL~~~~r~~~ 407 (570)
|.- -+++.++|+||+..-. ..-..|++|+..+|..+. ++.
T Consensus 280 ~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae-~~G 358 (577)
T KOG3770|consen 280 LWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAE-SAG 358 (577)
T ss_pred hHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHH-hcC
Confidence 433 3488999999986421 124678999999998864 344
Q ss_pred CEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCC--CeEEEeCCccccc
Q 008327 408 PWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYK--VDIAVFGHVHNYE 462 (570)
Q Consensus 408 pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~--VdlvlsGH~H~Ye 462 (570)
.-|=+++|.|++- +...+ +....+-.++.++. +--.|.||.|.=+
T Consensus 359 ekVhil~HIPpG~---------~~c~~-~ws~~f~~iv~r~~~tI~gqf~GH~h~d~ 405 (577)
T KOG3770|consen 359 EKVHILGHIPPGD---------GVCLE-GWSINFYRIVNRFRSTIAGQFYGHTHIDE 405 (577)
T ss_pred CEEEEEEeeCCCC---------cchhh-hhhHHHHHHHHHHHHhhhhhccccCccee
Confidence 4466889999721 11111 11345556666653 3357999999644
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.19 E-value=0.0092 Score=59.66 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCC
Q 008327 438 RESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGA 495 (570)
Q Consensus 438 r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~a 495 (570)
.+.++.++.++++|++++||.|.-... +... +..+..|++.|..
T Consensus 174 ~~~~~~~~~~~~~~~~i~GHtH~~~~~-~~~~-------------~~~~~~~~~lgdW 217 (231)
T TIGR01854 174 PAEVAAVMRRYGVDRLIHGHTHRPAIH-PLQA-------------DGQPATRIVLGDW 217 (231)
T ss_pred HHHHHHHHHHcCCCEEEECCccCccee-eccc-------------CCCccEEEEECCC
Confidence 457888889999999999999976533 3321 1234578888775
No 49
>PRK09453 phosphodiesterase; Provisional
Probab=97.18 E-value=0.021 Score=54.84 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=39.6
Q ss_pred HCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCccEEEEEEec
Q 008327 447 KYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDHGFVKLTAFD 526 (570)
Q Consensus 447 ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~Gy~~v~~~n 526 (570)
..++|++++||.|.-... ..+++.++--|+.|.... .....|..+++ +
T Consensus 116 ~~~~d~vi~GHtH~p~~~------------------~~~~~~~iNpGs~~~p~~-------------~~~~s~~il~~-~ 163 (182)
T PRK09453 116 LHDGDVLVYGHTHIPVAE------------------KQGGIILFNPGSVSLPKG-------------GYPASYGILDD-N 163 (182)
T ss_pred ccCCCEEEECCCCCCcce------------------EECCEEEEECCCccccCC-------------CCCCeEEEEEC-C
Confidence 356899999999963221 124778888888775320 11234666665 2
Q ss_pred CCeEEEEEEECCCCcEEEEEEE
Q 008327 527 HSNLLFEYKKSRDGKVYDSFRI 548 (570)
Q Consensus 527 ~t~L~~~~~~~~dG~v~D~f~I 548 (570)
.++.+.-..|+++-++.|
T Consensus 164 ----~~~~~~~~~~~~~~~~~~ 181 (182)
T PRK09453 164 ----VLSVIDLEGGEVIAQVAI 181 (182)
T ss_pred ----cEEEEECCCCeEEEeecc
Confidence 234444566677776654
No 50
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.15 E-value=0.012 Score=56.31 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=29.6
Q ss_pred EEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccc
Q 008327 409 WLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYE 462 (570)
Q Consensus 409 wvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Ye 462 (570)
-+|++.|--. |.... . ...++.+-++.++|++++||.|...
T Consensus 82 ~ki~l~HGh~-~~~~~----------~--~~~l~~la~~~~~Dvli~GHTH~p~ 122 (172)
T COG0622 82 VKIFLTHGHL-YFVKT----------D--LSLLEYLAKELGADVLIFGHTHKPV 122 (172)
T ss_pred EEEEEECCCc-ccccc----------C--HHHHHHHHHhcCCCEEEECCCCccc
Confidence 4688888755 32210 1 4678888888999999999999754
No 51
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=97.11 E-value=0.0033 Score=62.35 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=15.7
Q ss_pred CCccEEEEcCceeecCC
Q 008327 325 KNIDIVFHIGDICYANG 341 (570)
Q Consensus 325 ~~~Dfvl~~GDi~Y~~g 341 (570)
.++|++||+||.+|++.
T Consensus 28 ~~~d~~l~~GD~IY~d~ 44 (228)
T cd07389 28 EDPDLFLHLGDQIYADD 44 (228)
T ss_pred cCCCEEEEcCCeecccC
Confidence 68999999999999985
No 52
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.02 E-value=0.0027 Score=60.65 Aligned_cols=113 Identities=18% Similarity=0.291 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCccEEEEcCceeecCCc--hhHHHHHHHhhcccccCCCeEEEEEEEEECCEEEEEEeCCCCCCCCHHHH
Q 008327 315 NTTRQLIQDLKNIDIVFHIGDICYANGY--ISQWDQFTAQIEPIASTVPYMIARYSTDYGMFRFCIADTEQDWREGTEQY 392 (570)
Q Consensus 315 ~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~--~~~wd~f~~~i~~~~s~vP~m~~~YSfd~G~vhFi~LDTe~~~~~g~~Q~ 392 (570)
++++++++. .+||+|+++||++..... ...|.+..+.++.+....... -+.+.++.+-.|+|......
T Consensus 35 ~~~~~~i~~-~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~GNHD~g~~~~-- 104 (171)
T cd07384 35 RAFKTALQR-LKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNG-------LEDIPVYYVPGNHDIGYGEV-- 104 (171)
T ss_pred HHHHHHHHh-cCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccc-------cCCceEEEECCccccCCCCc--
Confidence 344555543 689999999999964322 234655544443332100000 02344556777777543211
Q ss_pred HHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 393 RFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 393 ~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
.++...++... ...|++.|.|. + + ++.+.+++++|+||.|-+-+.
T Consensus 105 ~~~~~~~~~f~----~~fi~l~H~p~-~-----------------~-----~~~~~~~~~~lsGH~H~~~~~ 149 (171)
T cd07384 105 ISFPEVVDRFE----RYFILLTHIPL-Y-----------------R-----LLDTIKPVLILSGHDHDQCEV 149 (171)
T ss_pred cccHHHHHHHH----hhheeEECCcc-H-----------------H-----HHhccCceEEEeCcccCCeEE
Confidence 11112222211 12389999986 1 1 556789999999999988554
No 53
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.96 E-value=0.011 Score=55.59 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCccEEEEcCceeecCC--chhHHHHHHHhhccccc---CCCeEEEEEEEEECCEEEEEEeCCCCCCC---
Q 008327 316 TTRQLIQDLKNIDIVFHIGDICYANG--YISQWDQFTAQIEPIAS---TVPYMIARYSTDYGMFRFCIADTEQDWRE--- 387 (570)
Q Consensus 316 t~~~i~~~~~~~Dfvl~~GDi~Y~~g--~~~~wd~f~~~i~~~~s---~vP~m~~~YSfd~G~vhFi~LDTe~~~~~--- 387 (570)
.++++++. .+||+|+++||++.... ....|..++..+..+.. .+|++ .+-.++|...
T Consensus 29 ~~~~~i~~-~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------------~v~GNHD~~~~~~ 93 (156)
T cd08165 29 SFQTSLWL-LQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLH--------------VVVGNHDIGFHYE 93 (156)
T ss_pred HHHHHHHh-cCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEE--------------EEcCCCCcCCCCc
Confidence 34445544 58999999999996532 23456555444433221 24444 3444554321
Q ss_pred -CHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 388 -GTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 388 -g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
...-.+.+++. .|++.|.|. +. ++.+++++++|+||.|..-+.
T Consensus 94 ~~~~~~~~~~~~-----------~~~l~H~p~-~~----------------------~~~~~~~~~~l~GH~H~~~~~ 137 (156)
T cd08165 94 MTTYKLERFEKV-----------FILLQHFPL-YR----------------------LLQWLKPRLVLSGHTHSFCEV 137 (156)
T ss_pred cCHHHHHHHHHH-----------eeeeeCChH-HH----------------------HHHhhCCCEEEEcccCCCcee
Confidence 11111112211 288889986 21 334568889999999985444
No 54
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=96.89 E-value=0.029 Score=60.87 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=33.8
Q ss_pred CeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecC
Q 008327 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYAN 340 (570)
Q Consensus 286 ~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~ 340 (570)
.+||++++|+|.+.... ... ......++++++++.. +++|+||++||+....
T Consensus 3 ~mKIlh~SD~HlG~~~~--~~~-r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~ 56 (405)
T TIGR00583 3 TIRILVSTDNHVGYGEN--DPV-RGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHEN 56 (405)
T ss_pred ceEEEEEcCCCCCCccC--Cch-hhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCC
Confidence 48999999999864310 000 0112345666665542 6899999999999654
No 55
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.59 E-value=0.012 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 438 RESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 438 r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
.+.+..++.+++++++++||.|.....
T Consensus 178 ~~~~~~~~~~~~~~~~i~GH~H~~~~~ 204 (217)
T cd07398 178 EEAVARLARRKGVDGVICGHTHRPALH 204 (217)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCeE
Confidence 466777788899999999999986544
No 56
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.52 E-value=0.054 Score=55.40 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=38.7
Q ss_pred EEEEEeccccccCCCCccccCC-------CC-----CcchhHHHHHHHHHHCCCeEEEeCCccc-cceeeec
Q 008327 409 WLIFLAHRVLGYSSDLSYAVEG-------SF-----AEPMGRESLQKLWQKYKVDIAVFGHVHN-YERICPI 467 (570)
Q Consensus 409 wvIv~~H~P~~yss~~~~~~~g-------~~-----~~~~~r~~l~~L~~ky~VdlvlsGH~H~-YeRt~pv 467 (570)
-=|++.|.|+ +..... +... .+ ....+...+..|+++.+....|+||.|. |++..|-
T Consensus 166 vDIlLSHdWP-~gI~~~-~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~~~~~~ 235 (262)
T cd00844 166 IDIFLSHDWP-RGIYKH-GDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAALVPH 235 (262)
T ss_pred CcEEEeCCCC-cchhhc-cchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCcccceecCC
Confidence 3599999988 655321 1100 00 0123457889999999999999999997 8877543
No 57
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=96.51 E-value=0.26 Score=50.51 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=34.9
Q ss_pred HHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCccccc
Q 008327 392 YRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNYE 462 (570)
Q Consensus 392 ~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Ye 462 (570)
.++..+.|++ .+...+|++.|-+..+... .. ...+.....|.++ .+||++|.||.|...
T Consensus 172 ~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~-----~~----~~~~~~~~~la~~~~~vD~IlgGHsH~~~ 231 (277)
T cd07410 172 AKKYVPKLRA---EGADVVVVLAHGGFERDLE-----ES----LTGENAAYELAEEVPGIDAILTGHQHRRF 231 (277)
T ss_pred HHHHHHHHHH---cCCCEEEEEecCCcCCCcc-----cc----cCCccHHHHHHhcCCCCcEEEeCCCcccc
Confidence 4444455543 3567899999988622110 00 0002333455555 689999999999753
No 58
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=96.47 E-value=0.012 Score=57.44 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=60.8
Q ss_pred cCCccEEEEcCceeecCCc--hhHHHHHHHhhcccc-cCCCeEE-----EEEEEEECCEEEEEEeCCCCCCCCHHHHHHH
Q 008327 324 LKNIDIVFHIGDICYANGY--ISQWDQFTAQIEPIA-STVPYMI-----ARYSTDYGMFRFCIADTEQDWREGTEQYRFI 395 (570)
Q Consensus 324 ~~~~Dfvl~~GDi~Y~~g~--~~~wd~f~~~i~~~~-s~vP~m~-----~~YSfd~G~vhFi~LDTe~~~~~g~~Q~~WL 395 (570)
.-+||.|+++||+.. .+. .++|.+..+....+. ..-+.+. .......+.+.++.+-.++|..-+.. . -
T Consensus 42 ~l~Pd~V~fLGDLfd-~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~~~-~--~ 117 (193)
T cd08164 42 WLKPDAVVVLGDLFS-SQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGYGGE-V--T 117 (193)
T ss_pred hcCCCEEEEeccccC-CCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCCCCc-c--c
Confidence 368999999999993 343 234432222221111 1111111 00223456788889999998643221 1 1
Q ss_pred HHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 396 EHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 396 e~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
+..++. -...| |++.|.|. +- ...+.+++++|+||.|-=++.
T Consensus 118 ~~~i~R---F~~~F-ilL~H~P~-~~----------------------~~~~~~~dl~lSGHtHgGqi~ 159 (193)
T cd08164 118 EARIER---FESLF-ILLTHVPL-YK----------------------IFLEGKPGLILTGHDHEGCDY 159 (193)
T ss_pred hHHhhh---eheeE-EEEEcccc-ee----------------------ccccCCCCEEEeCccCCCeEE
Confidence 223333 22334 99999997 32 112347899999999975554
No 59
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.33 E-value=0.0097 Score=48.52 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=43.8
Q ss_pred CCccceeecCCCCCeEEEEEEeCCC--CCCCccEEEEeecCCCCceecccceEEecccccCCCCccccccCCceEEEEEe
Q 008327 168 APVYPRLAQGKVWNEMTVTWTSGYG--INEAEPFVEWGPKGGDRTYSPAGTLTFGRGSMCGAPARTVGWRDPGYIHTGFL 245 (570)
Q Consensus 168 ~P~~~~La~~~~~~~m~V~W~T~~~--~~~~~~~V~yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~h~a~l 245 (570)
+|..+++... ..+++.|+|..... .....-.|+|......... ...+. ++-.+.+++
T Consensus 2 ~P~~l~v~~~-~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~---~~~~~-----------------~~~~~~~~i 60 (85)
T PF00041_consen 2 APENLSVSNI-SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDW---QEVTV-----------------PGNETSYTI 60 (85)
T ss_dssp SSEEEEEEEE-CSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEE---EEEEE-----------------ETTSSEEEE
T ss_pred cCcCeEEEEC-CCCEEEEEEECCCCCCCCeeEEEEEEEecccceee---eeeee-----------------eeeeeeeee
Confidence 3555555544 47999999998841 1112235566544333200 00111 112347888
Q ss_pred CCCCCCCEEEEEEeeec
Q 008327 246 RELWPNAMYTYKLGHRL 262 (570)
Q Consensus 246 ~gL~Pgt~Y~Yrvg~~~ 262 (570)
+||+|+++|.++|....
T Consensus 61 ~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 61 TGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp ESCCTTSEEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEEEe
Confidence 99999999999999764
No 60
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=96.28 E-value=0.17 Score=51.46 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=27.3
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCcc-EEEEcCceeec
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNID-IVFHIGDICYA 339 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~D-fvl~~GDi~Y~ 339 (570)
++++.+.|.+.-... ... +.+.+..+..++++. ++++ +++..||+...
T Consensus 1 ~~il~~nd~~~~~~~---~~~--~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g 51 (257)
T cd07406 1 FTILHFNDVYEIAPL---DGG--PVGGAARFATLRKQLRKENPNTLVLFSGDVLSP 51 (257)
T ss_pred CeEEEEccceeeccc---CCC--CcCCHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 478888888732210 000 112344455555542 4567 99999999854
No 61
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=96.16 E-value=0.019 Score=53.83 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEEEEEEEECCEEEEEEeCCCCCCCCHHHHHH
Q 008327 315 NTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIARYSTDYGMFRFCIADTEQDWREGTEQYRF 394 (570)
Q Consensus 315 ~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~~YSfd~G~vhFi~LDTe~~~~~g~~Q~~W 394 (570)
+.++.+.++..++|++|.+||+.-.+.....|..|++-. ....+|.+. +..++.
T Consensus 15 ~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~--~~~pipTyf--------------~ggn~~---------- 68 (150)
T cd07380 15 EKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGS--KKVPIPTYF--------------LGGNNP---------- 68 (150)
T ss_pred HHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCC--ccCCCCEEE--------------ECCCCC----------
Confidence 445555445578999999999986554433444444322 223344442 221111
Q ss_pred HHHHHhcccCCCCCEEEEEeccccccCCCCccccCC--CCCcchhHHHHHHHHHHCCCeEEEeCCcc-ccceeeeccc
Q 008327 395 IEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEG--SFAEPMGRESLQKLWQKYKVDIAVFGHVH-NYERICPIYQ 469 (570)
Q Consensus 395 Le~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g--~~~~~~~r~~l~~L~~ky~VdlvlsGH~H-~YeRt~pv~~ 469 (570)
+.-|++.|.|+ +..... ..-. .-....+...+..|+++.+....|+||.| .|||- |-.+
T Consensus 69 -------------~~DILlTh~wP-~gi~~~-~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~-Pf~~ 130 (150)
T cd07380 69 -------------GVDILLTSEWP-KGISKL-SKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE-PYRN 130 (150)
T ss_pred -------------CCCEEECCCCc-hhhhhh-CCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec-CccC
Confidence 33599999998 664321 1000 00012345788899999999999999999 67775 4433
No 62
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=96.15 E-value=0.065 Score=53.90 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=27.8
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCcc-EEEEcCceeec
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNID-IVFHIGDICYA 339 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~D-fvl~~GDi~Y~ 339 (570)
++|+.++|+|..-.+ . -+.+.+..+..++++. .++| +++..||+...
T Consensus 1 l~i~~~sD~hg~~~~-~-----~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~ 50 (252)
T cd00845 1 LTILHTNDLHGHFEP-A-----GGVGGAARLATLIKEERAENENTLLLDAGDNFDG 50 (252)
T ss_pred CEEEEecccccCccc-c-----CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCC
Confidence 479999999943210 0 0112334445555442 3577 88999999854
No 63
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=96.06 E-value=0.52 Score=48.80 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=34.5
Q ss_pred HHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH--CCCeEEEeCCccccc
Q 008327 393 RFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK--YKVDIAVFGHVHNYE 462 (570)
Q Consensus 393 ~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k--y~VdlvlsGH~H~Ye 462 (570)
+-+++.++++...+..-+|++.|-.. ..... .... +.. ......++.+ .++|++|.||.|...
T Consensus 178 e~~~~~v~~lr~~~~D~IIvL~H~G~-~~~~~----~~~~-~~~-~~~~~~l~~~~~~~iD~IlgGHsH~~~ 242 (288)
T cd07412 178 EAINAVAPELKAGGVDAIVVLAHEGG-STKGG----DDTC-SAA-SGPIADIVNRLDPDVDVVFAGHTHQAY 242 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCC-CCCCC----Cccc-ccc-ChhHHHHHhhcCCCCCEEEeCccCccc
Confidence 34444444433245778999999875 21110 0000 000 1233444444 489999999999764
No 64
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=95.36 E-value=0.35 Score=57.77 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=85.0
Q ss_pred ceeE-EcccCCCC-cceeeceEEEEEEeeccc--ceEEEEEecCCCCcEEEEeecceecC----CCCCCcc-ceeecCCC
Q 008327 109 IKFQ-YANYSSPQ-YKSTGKGSLKLQLINQRS--DFSFVLFTNGLLNPKVVAVSNKVTFT----NPNAPVY-PRLAQGKV 179 (570)
Q Consensus 109 ~~~~-~~~~~~~~-~~~~g~gs~~~~l~n~R~--~~~f~~f~~~~~~~~l~a~s~~v~f~----~~~~P~~-~~La~~~~ 179 (570)
.+|+ |.+..|++ ++.-=......+|-+++. +|.|++-.-+..-+- ..|..|++. -|.+|-| +.|....
T Consensus 552 ~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g--~sS~~i~V~Tlsd~PsaPP~Nl~lev~s- 628 (1381)
T KOG4221|consen 552 TGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSG--VSSADITVRTLSDVPSAPPQNLSLEVVS- 628 (1381)
T ss_pred eEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCC--CCCCceEEEeccCCCCCCCcceEEEecC-
Confidence 5666 22222233 333345667777888885 677777653322110 123333321 4666766 8887765
Q ss_pred CCeEEEEEEeCCCCCCCccEEEEeecCCCCceecccceEEecccccCCCCccccccCCceEEEEEeCCCCCCCEEEEEEe
Q 008327 180 WNEMTVTWTSGYGINEAEPFVEWGPKGGDRTYSPAGTLTFGRGSMCGAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLG 259 (570)
Q Consensus 180 ~~~m~V~W~T~~~~~~~~~~V~yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~h~a~l~gL~Pgt~Y~Yrvg 259 (570)
.++++|.|.............-|...............++. .|....-.+++|+|+|.|.+||.
T Consensus 629 StsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v----------------~~n~~~~l~~~Lep~T~Y~vrIs 692 (1381)
T KOG4221|consen 629 STSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV----------------KGNTTQYLFNGLEPNTQYRVRIS 692 (1381)
T ss_pred CCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec----------------ccchhhhHhhcCCCCceEEEEEE
Confidence 79999999988643322333334332211100001111111 11222334678999999999998
Q ss_pred eecCCCcccccceEEEEeC
Q 008327 260 HRLFNGTYIWSSEYQFKAS 278 (570)
Q Consensus 260 ~~~~dg~~~wS~~~~F~T~ 278 (570)
....+|.+..|++.+|.|+
T Consensus 693 a~t~nGtGpaS~w~~aeT~ 711 (1381)
T KOG4221|consen 693 AMTVNGTGPASEWVSAETP 711 (1381)
T ss_pred EeccCCCCCcccceeccCc
Confidence 8777777777899999986
No 65
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=94.92 E-value=0.066 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHHHCCCeEEEeCCccccce
Q 008327 440 SLQKLWQKYKVDIAVFGHVHNYER 463 (570)
Q Consensus 440 ~l~~L~~ky~VdlvlsGH~H~YeR 463 (570)
.++.+|++++.++++.||+|....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 578889999999999999997543
No 66
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.84 E-value=0.3 Score=49.34 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceee
Q 008327 391 QYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERIC 465 (570)
Q Consensus 391 Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~ 465 (570)
+.+.+++++++++ .+..++||+.|--..|... ..+. .+++-..+.+.++|+|+.+|-|..+-..
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~---------p~~~-q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYENY---------PTPE-QRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC---------CCHH-HHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 4578888888875 5688999999975422221 1222 4566666666899999999999876553
No 67
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=94.40 E-value=0.097 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=16.3
Q ss_pred HHHHHhcCCccEEEEcCceeecC
Q 008327 318 RQLIQDLKNIDIVFHIGDICYAN 340 (570)
Q Consensus 318 ~~i~~~~~~~Dfvl~~GDi~Y~~ 340 (570)
+.+.+...++|.|+++||++...
T Consensus 34 ~~~~~~~~~~d~vi~~GDl~~~~ 56 (168)
T cd07390 34 RNWNETVGPDDTVYHLGDFSFGG 56 (168)
T ss_pred HHHhhhcCCCCEEEEeCCCCCCC
Confidence 33333346789999999999643
No 68
>PHA02546 47 endonuclease subunit; Provisional
Probab=94.23 E-value=0.54 Score=49.90 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=30.8
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeec
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYA 339 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~ 339 (570)
+||+.++|+|.+.... ..+ ........++++++. ..++|+|+++||+...
T Consensus 1 MKilhiSD~HLG~~~~-~~~--~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~ 52 (340)
T PHA02546 1 MKILLIGDQHLGVRKD-DPW--FQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDV 52 (340)
T ss_pred CeEEEEeeecCCCcCC-Chh--hHHHHHHHHHHHHHHHHHcCCCEEEECCcccCC
Confidence 4899999999875321 110 011112345555432 2689999999999854
No 69
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=94.16 E-value=0.45 Score=37.85 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCCCCEEEEEEeeecCCCcccccceEEEE
Q 008327 239 YIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFK 276 (570)
Q Consensus 239 ~~h~a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~ 276 (570)
-...+.+.+|+|+++|.++|.....++...|+....|+
T Consensus 55 ~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~~~~~~ 92 (93)
T cd00063 55 SETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVT 92 (93)
T ss_pred cccEEEEccccCCCEEEEEEEEECCCccCCCccccccc
Confidence 34677889999999999999875433333444444443
No 70
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=93.95 E-value=0.73 Score=53.21 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=58.8
Q ss_pred CCCCCcc-ceeecCC-CCCeEEEEEEeCCCCCC--CccEEEEeecCCCCceecccceEEecccccCCCCccccccCCceE
Q 008327 165 NPNAPVY-PRLAQGK-VWNEMTVTWTSGYGINE--AEPFVEWGPKGGDRTYSPAGTLTFGRGSMCGAPARTVGWRDPGYI 240 (570)
Q Consensus 165 ~~~~P~~-~~La~~~-~~~~m~V~W~T~~~~~~--~~~~V~yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~ 240 (570)
|-.+|.. .+|-+.. ..+++++.|.-.+..+. ..-.|+|-++..+.. +|+.- + .-.
T Consensus 439 ~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~-------~~~~~-------~-------t~~ 497 (996)
T KOG0196|consen 439 NQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDER-------SYSTL-------K-------TKT 497 (996)
T ss_pred cccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccccc-------ceeEE-------e-------ccc
Confidence 3344544 2233333 37899999987653211 123455555443211 11100 0 124
Q ss_pred EEEEeCCCCCCCEEEEEEeeecCCCcccccceEEEEeCCC
Q 008327 241 HTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPY 280 (570)
Q Consensus 241 h~a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p~ 280 (570)
.+++++||+|||.|.+||......|-+..|....|.|.+.
T Consensus 498 ~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 498 TTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 6789999999999999999876566666899999999885
No 71
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=93.83 E-value=3.8 Score=41.84 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=41.2
Q ss_pred EEEECCEEEEEEeCC-CCC-CCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHH
Q 008327 368 STDYGMFRFCIADTE-QDW-REGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLW 445 (570)
Q Consensus 368 Sfd~G~vhFi~LDTe-~~~-~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~ 445 (570)
-++.+++++-+++-. ..+ ..-..-++-+++.+++... +...+||.+|--. ++ + ...+.. +
T Consensus 101 i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk~-~~D~IIV~~H~g~--ts-----------E---k~ala~-~ 162 (255)
T cd07382 101 VVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELKE-EADIIFVDFHAEA--TS-----------E---KIALGW-Y 162 (255)
T ss_pred EEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHhc-CCCEEEEEECCCC--CH-----------H---HHHHHH-h
Confidence 456777666555422 111 1111123345555655432 5678999999642 11 1 223332 2
Q ss_pred HHCCCeEEEeCCcccc
Q 008327 446 QKYKVDIAVFGHVHNY 461 (570)
Q Consensus 446 ~ky~VdlvlsGH~H~Y 461 (570)
..-+||+++.||.|..
T Consensus 163 ldg~VdvIvGtHTHv~ 178 (255)
T cd07382 163 LDGRVSAVVGTHTHVQ 178 (255)
T ss_pred CCCCceEEEeCCCCcc
Confidence 2346999999999974
No 72
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=93.81 E-value=0.94 Score=46.14 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHhccc-CCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCcccc
Q 008327 391 QYRFIEHCLASVD-RQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNY 461 (570)
Q Consensus 391 Q~~WLe~dL~~~~-r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Y 461 (570)
..+.+++.+++.. ..+...+|++.|-+. .. . + . +.++ .+||++|.||.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~D~iI~l~H~g~-~~-------------~--~-~---la~~~~~iDlilgGH~H~~ 219 (264)
T cd07411 167 REEELQEVVVKLRREEGVDVVVLLSHNGL-PV-------------D--V-E---LAERVPGIDVILSGHTHER 219 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCCc-hh-------------h--H-H---HHhcCCCCcEEEeCccccc
Confidence 3444554433321 245678999999875 10 0 1 1 1222 68999999999964
No 73
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=93.27 E-value=3.6 Score=41.71 Aligned_cols=48 Identities=8% Similarity=0.123 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcC--CccEEEEcCceeec
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLK--NIDIVFHIGDICYA 339 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~--~~Dfvl~~GDi~Y~ 339 (570)
++++.++|+|..-.... -+.+.+..+..++++.. +.++++..||+...
T Consensus 1 i~il~~~D~H~~~~~~~-----~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~g 50 (257)
T cd07408 1 ITILHTNDIHGRIDEDD-----NNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQG 50 (257)
T ss_pred CEEEEeccCcccccCCC-----CccccHHHHHHHHHHHHhcCCEEEEeCCCcCCC
Confidence 47899999986432100 01123344455554432 57899999999853
No 74
>PRK04036 DNA polymerase II small subunit; Validated
Probab=93.19 E-value=1.7 Score=48.64 Aligned_cols=48 Identities=6% Similarity=0.210 Sum_probs=28.8
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHH-h-------cCCccEEEEcCceeec
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQ-D-------LKNIDIVFHIGDICYA 339 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~-~-------~~~~Dfvl~~GDi~Y~ 339 (570)
...++++++|.|.+... + ....++.+.+.+. . ..+++.++++||++..
T Consensus 242 ~~~~i~~ISDlHlgs~~----~---~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~ 297 (504)
T PRK04036 242 EKVYAVFISDVHVGSKE----F---LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDG 297 (504)
T ss_pred CccEEEEEcccCCCCcc----h---hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCccccc
Confidence 45799999999976431 1 0111222222222 1 2468999999999953
No 75
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=93.09 E-value=6.5 Score=40.39 Aligned_cols=99 Identities=11% Similarity=0.068 Sum_probs=56.8
Q ss_pred EEEEECCEEEEEEeCC-CCCC-C--CHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHH
Q 008327 367 YSTDYGMFRFCIADTE-QDWR-E--GTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQ 442 (570)
Q Consensus 367 YSfd~G~vhFi~LDTe-~~~~-~--g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~ 442 (570)
..++.++..+-+++-. ..+. + ...-.+-+++.+++.+ .+++.+||.+|--. .. .+...
T Consensus 101 ~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk-~~~d~IIVd~Haea----------------ts-EK~a~ 162 (266)
T TIGR00282 101 LVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLK-KDCDLIFVDFHAET----------------TS-EKNAF 162 (266)
T ss_pred EEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhh-cCCCEEEEEeCCCC----------------HH-HHHHH
Confidence 3456777776666532 1121 1 1112223444444432 24678999999542 01 24556
Q ss_pred HHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEE-eCCCCCC
Q 008327 443 KLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIA-AGGAGAS 498 (570)
Q Consensus 443 ~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv-~G~aG~~ 498 (570)
..+.+-+||+|+.-|.|..--- .+. -++||-||+ +|+-|..
T Consensus 163 ~~~ldg~vsaVvGtHtHV~TaD-----~~i----------l~~gtayitD~Gm~G~~ 204 (266)
T TIGR00282 163 GMAFDGYVTAVVGTHTHVPTAD-----LRI----------LPKGTAYITDVGMTGPF 204 (266)
T ss_pred HHHhCCCccEEEeCCCCCCCCc-----cee----------CCCCCEEEecCCcccCc
Confidence 7777889999999999963211 111 147899986 5666653
No 76
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=92.84 E-value=1.8 Score=43.47 Aligned_cols=16 Identities=44% Similarity=0.420 Sum_probs=13.2
Q ss_pred CCeEEEeCCcccccee
Q 008327 449 KVDIAVFGHVHNYERI 464 (570)
Q Consensus 449 ~VdlvlsGH~H~YeRt 464 (570)
..+++|+||.|.+...
T Consensus 191 ~p~vii~Gh~h~~~~~ 206 (243)
T cd07386 191 VPDILHTGHVHVYGVG 206 (243)
T ss_pred CCCEEEECCCCchHhE
Confidence 5689999999987654
No 77
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=92.63 E-value=3.5 Score=42.49 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCccccc
Q 008327 391 QYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNYE 462 (570)
Q Consensus 391 Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Ye 462 (570)
..+.+++.++++...+..-+|++.|-.. .. . + . |.++ .++|+++.||.|..-
T Consensus 167 ~~~~~~~~v~~lr~~~~D~II~l~H~G~--------~~------d--~-~---la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 167 EIEAAQKEADKLKAQGVNKIIALSHSGY--------EV------D--K-E---IARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCc--------hh------H--H-H---HHHcCCCCcEEEeCCcCccc
Confidence 3455666665553345678889999764 00 0 1 2 2222 589999999999853
No 78
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=92.12 E-value=6.2 Score=40.73 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYE 462 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Ye 462 (570)
.+..-+|++.|-.. +.... + +.. .+. ...+...+...++|++|.||.|...
T Consensus 172 ~~~D~VI~lsH~G~-~~~~~-~---~~~-~~~-~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 172 EKPDIVIAATHMGH-YDNGE-H---GSN-APG-DVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred cCCCEEEEEecccc-cCCcc-c---ccc-Cch-HHHHHHhcCCCCCCEEEeCCCCccc
Confidence 35678999999876 32210 0 100 011 1223333323589999999999854
No 79
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=92.08 E-value=4.3 Score=50.27 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCccccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNYE 462 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Ye 462 (570)
.+..-+|++.|-.. .... ..+ ......|.++ -+||++|.||.|..-
T Consensus 837 ~~~D~VV~LsH~G~-~~d~----~~~-------~~~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 837 EKVDAIIALTHLGS-NQDR----TTG-------EITGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred cCCCEEEEEecCCc-cccc----ccc-------ccHHHHHHHhCCCCCEEEeCCCCccc
Confidence 45678999999876 2110 001 1233445554 479999999999753
No 80
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=91.88 E-value=4.4 Score=45.90 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHC---CCeEEEeCCcccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKY---KVDIAVFGHVHNY 461 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky---~VdlvlsGH~H~Y 461 (570)
.+..-+|++.|-.+ ..... .+ +.. ..-..|.++. +||++|.||.|.+
T Consensus 208 ~~~D~IV~LsH~G~-~~~~~----~~---~~~--~~d~~la~~~~~~~IDvIlgGHsH~~ 257 (551)
T PRK09558 208 EKPDVIIALTHMGH-YDDGE----HG---SNA--PGDVEMARSLPAGGLDMIVGGHSQDP 257 (551)
T ss_pred cCCCEEEEEecccc-ccCCc----cC---CCC--ccHHHHHHhCCccCceEEEeCCCCcc
Confidence 35678999999876 22110 11 010 1113344443 7999999999975
No 81
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=91.79 E-value=4.7 Score=37.97 Aligned_cols=141 Identities=10% Similarity=0.108 Sum_probs=66.8
Q ss_pred EEEEEecCCCCCCCC--CCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhcccccCCCeEEE
Q 008327 288 QVIIFGDMGKDEADG--SNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIEPIASTVPYMIA 365 (570)
Q Consensus 288 rf~v~GD~g~~~~~g--~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~~~~s~vP~m~~ 365 (570)
.+.++||++.+...- .+.+.+........+....+....-|.+.|+||++.............+.+
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerL------------ 72 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERL------------ 72 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHc------------
Confidence 456778888765421 111222111111123333333456689999999997544333222222322
Q ss_pred EEEEEECCEEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHH
Q 008327 366 RYSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLW 445 (570)
Q Consensus 366 ~YSfd~G~vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~ 445 (570)
-|-.|+|.=|-...-.....-+-=..+..+... -.--.|++.|.|. .+-. .+ +.......
T Consensus 73 -----nGrkhlv~GNhDk~~~~~~~~~~~svq~f~~ie--~dg~~~~LsHyP~--~~~~---~~--------~~~~r~~y 132 (186)
T COG4186 73 -----NGRKHLVPGNHDKCHPMYRHAYFDSVQAFQRIE--WDGEDVYLSHYPR--PGQD---HP--------GMESRFDY 132 (186)
T ss_pred -----CCcEEEeeCCCCCCcccccchhhHHHHHHHhee--ECCeEEEEEeCCC--CCCC---Cc--------chhhhHHH
Confidence 144555554422111111111111112222221 1123699999985 2211 11 22333445
Q ss_pred HHCCCeEEEeCCccc
Q 008327 446 QKYKVDIAVFGHVHN 460 (570)
Q Consensus 446 ~ky~VdlvlsGH~H~ 460 (570)
.+.++++.+-||.|.
T Consensus 133 ~~~~~~llIHGH~H~ 147 (186)
T COG4186 133 LRLRVPLLIHGHLHS 147 (186)
T ss_pred HhccCCeEEeccccc
Confidence 567899999999998
No 82
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=2 Score=39.97 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCCCCCCCCCCCCCCcceeeeCCc
Q 008327 438 RESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAGASLSPFTTLQTTWSLYRDYDH 517 (570)
Q Consensus 438 r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG~~~~~~~~~~~~ws~~~~~~~ 517 (570)
.+.|.-|-++.+||+.++||.|.+|-.. .+|-.||--|+|-...... .......
T Consensus 96 ~~sL~~LaRqldvDILl~G~Th~f~Aye------------------~eg~ffvnPGSaTGAfn~~--------~t~~~~P 149 (183)
T KOG3325|consen 96 PESLALLARQLDVDILLTGHTHKFEAYE------------------HEGKFFVNPGSATGAFNVS--------DTDIIVP 149 (183)
T ss_pred HHHHHHHHHhcCCcEEEeCCceeEEEEE------------------eCCcEEeCCCcccCCCccc--------ccCCCCC
Confidence 3578888888999999999999987652 3566677666654332111 1111456
Q ss_pred cEEEEEEecCCeEEEEEEECCCCcE-EEEEEEEe
Q 008327 518 GFVKLTAFDHSNLLFEYKKSRDGKV-YDSFRISR 550 (570)
Q Consensus 518 Gy~~v~~~n~t~L~~~~~~~~dG~v-~D~f~I~k 550 (570)
.|+.+++ .++.+..-.++--||+| +|+..-.|
T Consensus 150 SFvLmDi-qg~~~v~YvY~lidgeVkVdki~ykK 182 (183)
T KOG3325|consen 150 SFVLMDI-QGSTVVTYVYRLIDGEVKVDKIEYKK 182 (183)
T ss_pred ceEEEEe-cCCEEEEEEeeeeCCcEEEEEEEecC
Confidence 7888888 55555444444557764 56655444
No 83
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=91.31 E-value=12 Score=45.09 Aligned_cols=192 Identities=16% Similarity=0.089 Sum_probs=102.1
Q ss_pred EcccccccCCCcccEEEEEEecC-----CCCCCCEEEEEcCCCCCCCCCCCCCCCCCCCCccCCCceeEEcccCCCCcce
Q 008327 49 ASPSILGMKGQNSDWLTVEYNSP-----NPSVGDWIGVFSPSNFSSSTCPAENPRVYPPLLCSAPIKFQYANYSSPQYKS 123 (570)
Q Consensus 49 ~~p~~l~~~~~~~~~v~v~~~~~-----~p~~~d~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 123 (570)
.+|.=|.-.|.....++|+|... +-..-.++=.|.|..... .+...-+....==+|.|.+.+-..|
T Consensus 718 ~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~-------~W~~~~v~~~d~~~~V~~~~st~~~-- 788 (1051)
T KOG3513|consen 718 VNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADK-------EWKEVIVSNQDQPRYVVSNESTEPF-- 788 (1051)
T ss_pred cCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCc-------ccceeEecccCCceEEEcCCCCCCc--
Confidence 34554544455668899999984 344556777788875541 1111111111124677777553233
Q ss_pred eeceEEEEEEeecccceEEEEEecCCCCcEEEEeecceecCCCCCCccceeecCCCCCeEEEEEEeCCCC--CCCccEEE
Q 008327 124 TGKGSLKLQLINQRSDFSFVLFTNGLLNPKVVAVSNKVTFTNPNAPVYPRLAQGKVWNEMTVTWTSGYGI--NEAEPFVE 201 (570)
Q Consensus 124 ~g~gs~~~~l~n~R~~~~f~~f~~~~~~~~l~a~s~~v~f~~~~~P~~~~La~~~~~~~m~V~W~T~~~~--~~~~~~V~ 201 (570)
-.-.++++.+|.+-+=. ..++.+.-|..= .-+.+|..+++ ..-+.++|.|.|....-. ....-.|+
T Consensus 789 -tpyevKVqa~N~~GeGp--------~s~~~v~~S~Ed--~P~~ap~~~~~-~~~s~s~~~v~W~~~~~~nG~l~gY~v~ 856 (1051)
T KOG3513|consen 789 -TPYEVKVQAINDQGEGP--------ESQVTVGYSGED--EPPVAPTKLSA-KPLSSSEVNLSWKPPLWDNGKLTGYEVK 856 (1051)
T ss_pred -ceeEEEEEEecCCCCCC--------CCceEEEEcCCC--CCCCCCcccee-ecccCceEEEEecCcCccCCccceeEEE
Confidence 35578889999774321 112223322211 01345555543 333579999999543211 23446788
Q ss_pred EeecCCCCceecccceEEecccccCCCCccccccCCceEEEEEeCCCCCCCEEEEEEeeecCCCcccccceEEEEeCCC
Q 008327 202 WGPKGGDRTYSPAGTLTFGRGSMCGAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPY 280 (570)
Q Consensus 202 yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~h~a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p~ 280 (570)
|....+... ...... -.+-.-.+.|+||+|+|.|++.|..-..-|.+.-|...+-+|.+.
T Consensus 857 Y~~~~~~~~--~~~~~~-----------------i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~ 916 (1051)
T KOG3513|consen 857 YWKINEKEG--SLSRVQ-----------------IAGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKA 916 (1051)
T ss_pred EEEcCCCcc--ccccee-----------------ecCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCC
Confidence 876544321 000000 113456788999999999999998653333222233333344443
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.06 E-value=2.2 Score=47.81 Aligned_cols=93 Identities=24% Similarity=0.438 Sum_probs=63.0
Q ss_pred EEEEEec-C--CCCCCCEEEEEcCCCCCCCCCCCCCCCCCCCCccCCCceeEEcccCCCCcceeec---eEEEEE---Ee
Q 008327 64 LTVEYNS-P--NPSVGDWIGVFSPSNFSSSTCPAENPRVYPPLLCSAPIKFQYANYSSPQYKSTGK---GSLKLQ---LI 134 (570)
Q Consensus 64 v~v~~~~-~--~p~~~d~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~---gs~~~~---l~ 134 (570)
|+..|+- + .|+..||||||=-.-+.. ..+..|.|+... .+| ..|+ ..+.|+ |.
T Consensus 22 v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~----------------rdY~Tf~Wa~~p-~~~-~~~s~~~~~V~F~ayyLP 83 (546)
T PF07888_consen 22 VECHYTLTPGFHPSSKDWIGIFKVGWSST----------------RDYYTFVWAPVP-ENY-VEGSAVNCQVQFQAYYLP 83 (546)
T ss_pred eEEEEecCCCCCCCCCCeeEEeecCCCch----------------hheeeEEeeccC-ccc-cCCCccceEEEECcccCC
Confidence 7888875 2 899999999996442221 345788888642 344 4443 478886 55
Q ss_pred ec-ccceEEEEEecCCCCcEEEEeecceecCCCCCCccceeecCC
Q 008327 135 NQ-RSDFSFVLFTNGLLNPKVVAVSNKVTFTNPNAPVYPRLAQGK 178 (570)
Q Consensus 135 n~-R~~~~f~~f~~~~~~~~l~a~s~~v~f~~~~~P~~~~La~~~ 178 (570)
+. =..|.|+|... ...+++.|.+..|..|+ |...-+++..
T Consensus 84 k~~~e~YqfcYv~~---~g~V~G~S~pFqf~~~~-p~eeLvtle~ 124 (546)
T PF07888_consen 84 KDDDEFYQFCYVDQ---KGEVRGASTPFQFRAPK-PLEELVTLED 124 (546)
T ss_pred CCCCCeEEEEEECC---CccEEEecCCcccCCCC-ccccceeecc
Confidence 43 23488888754 34688999999998765 6665566655
No 85
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.63 E-value=0.71 Score=46.92 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=40.6
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeecCCc-hhHHHHHHHhhccccc--CCC
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYANGY-ISQWDQFTAQIEPIAS--TVP 361 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g~-~~~wd~f~~~i~~~~s--~vP 361 (570)
+||+.++|+|.+..-.... + .......++++++. ..++|+|+++||+...... ......|.+.++.+.. .+|
T Consensus 1 mkilh~SD~Hlg~~~~~~~--~-~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~ 77 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVS--R-LAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIP 77 (253)
T ss_pred CEEEEEhhhcCCCccCCCC--h-HHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCce
Confidence 4899999999875321100 0 00112234444432 2579999999999965432 1122223333333322 267
Q ss_pred eEEEE
Q 008327 362 YMIAR 366 (570)
Q Consensus 362 ~m~~~ 366 (570)
.+++.
T Consensus 78 v~~i~ 82 (253)
T TIGR00619 78 IVVIS 82 (253)
T ss_pred EEEEc
Confidence 76655
No 86
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=88.89 E-value=1.3 Score=47.90 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=59.1
Q ss_pred CCCeEEEEEecCCCCCCCCCCccccccc--chHHHHHHHHH---hcCCccEEEEcCceeecCC--chhHHHHHHHhhccc
Q 008327 284 DSLQQVIIFGDMGKDEADGSNEYNNFQR--GSLNTTRQLIQ---DLKNIDIVFHIGDICYANG--YISQWDQFTAQIEPI 356 (570)
Q Consensus 284 ~~~~rf~v~GD~g~~~~~g~~~~~~~q~--~s~~t~~~i~~---~~~~~Dfvl~~GDi~Y~~g--~~~~wd~f~~~i~~~ 356 (570)
+..+|+++++|.|.-+..+...+..+-. ++---+++..+ ...+||.++++||+...+- ..++|.+..+.++.+
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkI 125 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKI 125 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHh
Confidence 4569999999999976321111110000 00001122211 2368999999999995321 245675544444333
Q ss_pred ---ccCCCeEEEE---------------------------EEEEECCEEEEEEeCCC
Q 008327 357 ---ASTVPYMIAR---------------------------YSTDYGMFRFCIADTEQ 383 (570)
Q Consensus 357 ---~s~vP~m~~~---------------------------YSfd~G~vhFi~LDTe~ 383 (570)
..++|.+..+ -+|+.|+.-|+++|++.
T Consensus 126 f~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~fg~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 126 FGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVFGPTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred hCCCCCCeeEEeCCccccccccccchhHHHHHHHhhcchhhhhccCCceeEEeeehh
Confidence 2466776665 46899999999999874
No 87
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=87.81 E-value=1.2 Score=47.95 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=43.5
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeecCCc-hhHHHHHHHhhcccc-cCCCe
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYANGY-ISQWDQFTAQIEPIA-STVPY 362 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~~g~-~~~wd~f~~~i~~~~-s~vP~ 362 (570)
+||++++|+|.+... .+...+. ....+.+.++++.. .++||||++||+...... ...-..|.+.++.+. ..+|.
T Consensus 1 mkilHtSD~HLG~~~-~~~~~r~-~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv 78 (390)
T COG0420 1 MKILHTSDWHLGSKQ-LNLPSRL-EDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPV 78 (390)
T ss_pred CeeEEecccccchhh-ccCccch-HHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcE
Confidence 489999999998211 0010010 11233444444432 689999999999864321 112234445444433 47888
Q ss_pred EEEE
Q 008327 363 MIAR 366 (570)
Q Consensus 363 m~~~ 366 (570)
++..
T Consensus 79 ~~I~ 82 (390)
T COG0420 79 VVIA 82 (390)
T ss_pred EEec
Confidence 8776
No 88
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=87.48 E-value=4.3 Score=30.90 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCCCEEEEEEeee
Q 008327 240 IHTGFLRELWPNAMYTYKLGHR 261 (570)
Q Consensus 240 ~h~a~l~gL~Pgt~Y~Yrvg~~ 261 (570)
.+...+.+|+|++.|.++|...
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEE
Confidence 4788899999999999999764
No 89
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=87.27 E-value=7.9 Score=39.55 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.4
Q ss_pred EEEEECCEEEEEEeCCC-----CCCCCHHHHHHHHHHHhc
Q 008327 367 YSTDYGMFRFCIADTEQ-----DWREGTEQYRFIEHCLAS 401 (570)
Q Consensus 367 YSfd~G~vhFi~LDTe~-----~~~~g~~Q~~WLe~dL~~ 401 (570)
|.|+.++++|++.+... .+...+.-++.||..|+-
T Consensus 137 ~~~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L~w 176 (257)
T cd07387 137 YEFSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTLKW 176 (257)
T ss_pred eEEEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHHHh
Confidence 89999999999998763 133445557888888875
No 90
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=86.71 E-value=24 Score=40.08 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCccccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNYE 462 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Ye 462 (570)
....-+|++.|-.. . .+ . .|.++ .+||++|.||.|.+-
T Consensus 181 ~g~D~II~lsH~g~--~------~d--------~----~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 181 QGINKIILLSHAGF--E------KN--------C----EIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred CCCCEEEEEecCCc--H------HH--------H----HHHhcCCCCCEEEeCCCCccc
Confidence 34677899999653 1 00 1 12233 479999999999853
No 91
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=86.49 E-value=13 Score=41.72 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccc
Q 008327 390 EQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNY 461 (570)
Q Consensus 390 ~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~Y 461 (570)
...+++++.+.+..+....-+|++.|-++ ...... .... ... ..... .++|+++.||.|.+
T Consensus 187 d~~e~~~~~i~elk~~~vD~iI~LsH~G~-~~d~~~-~~~~--~~~--~~~~~-----~~iD~i~~GH~H~~ 247 (517)
T COG0737 187 DPIEAAKKYIPELKGEGVDVIIALSHLGI-EDDLEL-ASEV--PGD--VDVAV-----PGIDLIIGGHSHTV 247 (517)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeccCc-Cccccc-cccc--ccc--ccccc-----cCcceEeccCCccc
Confidence 44556666665553333667899999886 322111 1100 000 11111 44999999999964
No 92
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=85.39 E-value=1.5 Score=44.94 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=60.8
Q ss_pred EEEEECCEEEEEEeCCCCC-CC-CHHHHHHHHHHHhcccCCCCCEEEEEeccc-cccCCCCccc------cCCC-----C
Q 008327 367 YSTDYGMFRFCIADTEQDW-RE-GTEQYRFIEHCLASVDRQKQPWLIFLAHRV-LGYSSDLSYA------VEGS-----F 432 (570)
Q Consensus 367 YSfd~G~vhFi~LDTe~~~-~~-g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P-~~yss~~~~~------~~g~-----~ 432 (570)
||+|.|.+|.+-+-+...- .+ ...-+-||+.+|.......+| ++++.|.- +.+++..|.. +.|. .
T Consensus 228 ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww 306 (392)
T COG5555 228 YSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWW 306 (392)
T ss_pred eeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCC
Confidence 9999999999887643210 11 123467999999865433445 67777752 2244443321 1111 1
Q ss_pred CcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 433 AEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 433 ~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
.++. |..|...++-|+|.-.|.||.|...-.
T Consensus 307 ~a~e-r~all~~lqGYNvvg~fhGhkhd~~ma 337 (392)
T COG5555 307 PAPE-RGALLFFLQGYNVVGTFHGHKHDFNMA 337 (392)
T ss_pred CCCC-cchHHHhhcCceeEEecccccccccee
Confidence 1223 789999999999999999999986433
No 93
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=85.08 E-value=18 Score=44.05 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=73.9
Q ss_pred eceEEEEEEeecc--cceEEEEEecCCCCcEEEEeecceec-CCCCCCccceeecCCCCCeEEEEEEeCCCCCCCccEEE
Q 008327 125 GKGSLKLQLINQR--SDFSFVLFTNGLLNPKVVAVSNKVTF-TNPNAPVYPRLAQGKVWNEMTVTWTSGYGINEAEPFVE 201 (570)
Q Consensus 125 g~gs~~~~l~n~R--~~~~f~~f~~~~~~~~l~a~s~~v~f-~~~~~P~~~~La~~~~~~~m~V~W~T~~~~~~~~~~V~ 201 (570)
+.| +.+.+.|.- ..|.|+.-+-+..-. =..|.++.. ++|..|.+ .-+....+.++.|+|....- ...+...
T Consensus 480 s~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~--g~sS~pLkV~t~pEgp~~-~~a~ats~~ti~v~WepP~~--~n~~I~~ 553 (1381)
T KOG4221|consen 480 SPG-IQVTVQNLSPLTMYFFRVRAKNEAGS--GESSAPLKVTTQPEGPVQ-LQAYATSPTTILVTWEPPPF--GNGPITG 553 (1381)
T ss_pred CCc-eEEEeeecccceeEEEEEeccCcccC--CccCCceEEecCCCCCcc-ccccccCcceEEEEecCCCC--CCCCceE
Confidence 556 777777755 356666654322100 011222222 24446666 44455568999999998752 2234444
Q ss_pred Eee--cCCCCceecccceEEecccccCCCCccccccCCceEEEEEeCCCCCCCEEEEEEeeecCCCcccccceEEEEeCC
Q 008327 202 WGP--KGGDRTYSPAGTLTFGRGSMCGAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASP 279 (570)
Q Consensus 202 yg~--~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~h~a~l~gL~Pgt~Y~Yrvg~~~~dg~~~wS~~~~F~T~p 279 (570)
|.. ..++ ..+-..++ ---++.+|+||+|.|+|.|||......|.+.-|..-+|+|..
T Consensus 554 yk~~ys~~~----~~~~~~~~-----------------~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 554 YKLFYSEDD----TGKELRVE-----------------NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred EEEEEEcCC----CCceEEEe-----------------cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 432 1110 00001111 134778899999999999999987666766667788888864
No 94
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=84.59 E-value=2 Score=46.83 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=39.1
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeecCCch-h---HHHHHHHhhcccccCC
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYANGYI-S---QWDQFTAQIEPIASTV 360 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g~~-~---~wd~f~~~i~~~~s~v 360 (570)
+||++++|+|.+..-. ..... ......++++++. ..++|+|+++||+....... . .++.|+..+.. ..+
T Consensus 1 mkilh~SDlHlG~~~~--~~~~~-~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~--~~~ 75 (407)
T PRK10966 1 MRILHTSDWHLGQNFY--SKSRA-AEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ--TGC 75 (407)
T ss_pred CEEEEEcccCCCCccc--CcccH-HHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh--cCC
Confidence 4899999999864210 00000 0001123333332 26899999999998532211 1 12344444432 246
Q ss_pred CeEEEE
Q 008327 361 PYMIAR 366 (570)
Q Consensus 361 P~m~~~ 366 (570)
|.+++.
T Consensus 76 ~v~~I~ 81 (407)
T PRK10966 76 QLVVLA 81 (407)
T ss_pred cEEEEc
Confidence 776665
No 95
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=83.54 E-value=2.5 Score=42.29 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 395 IEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 395 Le~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
++++++++. .+...+|++.|-...|... ..+. ...+..-+.+.++|+++.||.|..+..
T Consensus 162 i~~~i~~lr-~~~D~vIv~~H~G~e~~~~---------p~~~-~~~~A~~l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 162 ILADIARAR-KKADVVIVSLHWGVEYQYE---------PTDE-QRELAHALIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred HHHHHHHHh-ccCCEEEEEecCccccCCC---------CCHH-HHHHHHHHHHcCCCEEEcCCCCcCCce
Confidence 344444442 3578999999976522211 0111 234555555579999999999987644
No 96
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=83.17 E-value=2.9 Score=41.78 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCcccccee
Q 008327 393 RFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERI 464 (570)
Q Consensus 393 ~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt 464 (570)
+-+++.++++. .+...+|+..|-...|... .... ...+-..+.+.++|+++.||.|..+-.
T Consensus 162 ~~~~~~i~~lr-~~~D~vIv~~H~G~e~~~~---------p~~~-~~~la~~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 162 ERIAADIAEAK-KKADIVIVSLHWGVEYSYY---------PTPE-QRELARALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred HHHHHHHHHHh-hcCCEEEEEecCcccCCCC---------CCHH-HHHHHHHHHHCCCCEEEcCCCCcCCCe
Confidence 34555555543 2378999999976422211 0111 345555666679999999999987543
No 97
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=81.10 E-value=23 Score=36.96 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCCCccceeecCC---CCCeEEEEEEeCCCCCCCc-cEEEEeecCCCCceecccceEEecccccCCCCcc-----cc--
Q 008327 165 NPNAPVYPRLAQGK---VWNEMTVTWTSGYGINEAE-PFVEWGPKGGDRTYSPAGTLTFGRGSMCGAPART-----VG-- 233 (570)
Q Consensus 165 ~~~~P~~~~La~~~---~~~~m~V~W~T~~~~~~~~-~~V~yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~-----~g-- 233 (570)
=|.-|+-..+-..+ .-++++|.|....+ .. .+.-|........ . ........++|..|-+. +.
T Consensus 171 ~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d---~~~kYCvy~~~~~~~~-~--~~~~~~~~n~C~~~~sr~k~e~v~Ck 244 (300)
T PF10179_consen 171 YPQLPDDTSIKEFNKLRTCNSVTIAWLGSPD---RSIKYCVYRREEHSNY-Q--ERSVSRMPNQCLGPESRKKSEKVLCK 244 (300)
T ss_pred CCCCCCCCceeEEcCCcccceEEEEEecCCC---CCceEEEEEEEecCch-h--hhhhcccCccCCCCCccccceEEEEE
Confidence 56677777765433 35899999986532 22 3444433221110 0 00112234567755321 11
Q ss_pred -ccC-------CceEEEEEeCCCCCCCEEEEEEeeec
Q 008327 234 -WRD-------PGYIHTGFLRELWPNAMYTYKLGHRL 262 (570)
Q Consensus 234 -~~~-------~g~~h~a~l~gL~Pgt~Y~Yrvg~~~ 262 (570)
++. +.-+-..+|.||+||+.|-..|....
T Consensus 245 ~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~ 281 (300)
T PF10179_consen 245 YFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNG 281 (300)
T ss_pred EEcCCccccccccccceeecccCCCCcEEEEEEEEec
Confidence 111 11223447999999999999998753
No 98
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=76.03 E-value=67 Score=32.77 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=51.2
Q ss_pred EEEEECCEEEEEEeCC--CCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHH
Q 008327 367 YSTDYGMFRFCIADTE--QDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKL 444 (570)
Q Consensus 367 YSfd~G~vhFi~LDTe--~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L 444 (570)
..|+.++..+.++|-. ....+..-=..-+++.|++. +.+++.+||=+|.=. + . -+.-.-.
T Consensus 98 ~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVDFHAEa---T----------S----EK~A~g~ 159 (253)
T PF13277_consen 98 RIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVDFHAEA---T----------S----EKQAMGW 159 (253)
T ss_dssp EEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEEE-S----H----------H----HHHHHHH
T ss_pred EEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEEeecCc---H----------H----HHHHHHH
Confidence 5677898888888742 22222222334455555544 356788899898532 0 0 2344555
Q ss_pred HHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEE-eCCCCC
Q 008327 445 WQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIA-AGGAGA 497 (570)
Q Consensus 445 ~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv-~G~aG~ 497 (570)
+.+-+|.+|+.=|.|.--- +.++ -++||-||+ +|+-|.
T Consensus 160 ~lDGrvsaV~GTHTHVqTa-----DerI----------Lp~GTaYiTDvGMtG~ 198 (253)
T PF13277_consen 160 YLDGRVSAVVGTHTHVQTA-----DERI----------LPGGTAYITDVGMTGP 198 (253)
T ss_dssp HHBTTBSEEEEESSSS-BS-------EE-----------TTS-EEES---EBEE
T ss_pred HhCCcEEEEEeCCCCccCc-----hhhc----------cCCCCEEEecCccccC
Confidence 6677999999999996311 1111 257888885 455555
No 99
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=72.98 E-value=16 Score=37.75 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHC-CCe-EEEeCCcccc
Q 008327 391 QYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKY-KVD-IAVFGHVHNY 461 (570)
Q Consensus 391 Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky-~Vd-lvlsGH~H~Y 461 (570)
|.+|+.+.|++ .+..-+|++.|-.. .. +. .. .+..+.+.++. ++| ++|.||.|..
T Consensus 175 ~~~~v~~~l~~---~~~DvIIvlsH~G~--~~------d~----~~-~~~~~~la~~~~~id~~Ii~GHsH~~ 231 (282)
T cd07407 175 QEPWFQDAINN---EDVDLILVLGHMPV--RD------DA----EF-KVLHDAIRKIFPDTPIQFLGGHSHVR 231 (282)
T ss_pred HHHHHHHHHHh---cCCCEEEEEeCCCC--CC------Cc----cH-HHHHHHHHHhCCCCCEEEEeCCcccc
Confidence 33588888874 35678999999875 21 11 11 22223344444 567 7999999974
No 100
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=72.04 E-value=9 Score=37.37 Aligned_cols=38 Identities=13% Similarity=0.304 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc---CCccEEEEcCceeecC
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL---KNIDIVFHIGDICYAN 340 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~---~~~Dfvl~~GDi~Y~~ 340 (570)
|++++||.|.. ...++++++.. .++|.++++||++..+
T Consensus 2 ri~~isDiHg~---------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g 42 (207)
T cd07424 2 RDFVVGDIHGH---------------YSLLQKALDAVGFDPARDRLISVGDLIDRG 42 (207)
T ss_pred CEEEEECCCCC---------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCC
Confidence 68999999842 23556666653 3689999999999643
No 101
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.35 E-value=5.8 Score=39.84 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEEeCCCC
Q 008327 438 RESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIAAGGAG 496 (570)
Q Consensus 438 r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv~G~aG 496 (570)
.+.....+++++||.+++||.|.-+-. +-.+..||+.|...
T Consensus 176 ~~~v~~~~~~~~vd~vI~GH~Hr~ai~------------------~i~~~~yi~lGdW~ 216 (237)
T COG2908 176 PAAVADEARRHGVDGVIHGHTHRPAIH------------------NIPGITYINLGDWV 216 (237)
T ss_pred HHHHHHHHHHcCCCEEEecCcccHhhc------------------cCCCceEEecCcch
Confidence 456677888999999999999964322 23468899998765
No 102
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=68.08 E-value=13 Score=36.68 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=28.5
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc---CCccEEEEcCceeec
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL---KNIDIVFHIGDICYA 339 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~---~~~Dfvl~~GDi~Y~ 339 (570)
-|++++||.|.. ...+++++++. .+.|.++++||++..
T Consensus 15 ~ri~visDiHg~---------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdr 55 (218)
T PRK09968 15 RHIWVVGDIHGE---------------YQLLQSRLHQLSFCPETDLLISVGDNIDR 55 (218)
T ss_pred CeEEEEEeccCC---------------HHHHHHHHHhcCCCCCCCEEEECCCCcCC
Confidence 389999999743 34566666654 368999999999954
No 103
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=67.17 E-value=10 Score=37.91 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=36.8
Q ss_pred eEEEEEecCCCCCCCCCCcccccccc--hHHHHHHHHHh--cCCccEEEEcCceeecCCchhHHHHHHHhhc
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRG--SLNTTRQLIQD--LKNIDIVFHIGDICYANGYISQWDQFTAQIE 354 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~--s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~ 354 (570)
-+.++++|.|.+............|. ..++++++.+. ..++|.++++||+.+.......|..+.+.++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~ 86 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIE 86 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHH
Confidence 35789999998742100000000111 12345555442 2579999999999976544244544444443
No 104
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=66.72 E-value=9.4 Score=37.73 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=28.8
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc---CCccEEEEcCceeec
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL---KNIDIVFHIGDICYA 339 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~---~~~Dfvl~~GDi~Y~ 339 (570)
-|++++||.|.. ...+++++++. .+.|-++++||++..
T Consensus 17 ~ri~vigDIHG~---------------~~~L~~lL~~i~~~~~~D~li~lGDlvDr 57 (218)
T PRK11439 17 RHIWLVGDIHGC---------------FEQLMRKLRHCRFDPWRDLLISVGDLIDR 57 (218)
T ss_pred CeEEEEEcccCC---------------HHHHHHHHHhcCCCcccCEEEEcCcccCC
Confidence 389999999753 35667777764 257899999999953
No 105
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=65.34 E-value=15 Score=37.93 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=28.1
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc---CCccEEEEcCceeec
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL---KNIDIVFHIGDICYA 339 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~---~~~Dfvl~~GDi~Y~ 339 (570)
+++++||.|.. ...+++++++. .+.|.++++||++..
T Consensus 2 ~~~vIGDIHG~---------------~~~l~~ll~~~~~~~~~D~li~lGDlVdr 41 (275)
T PRK00166 2 ATYAIGDIQGC---------------YDELQRLLEKIDFDPAKDTLWLVGDLVNR 41 (275)
T ss_pred cEEEEEccCCC---------------HHHHHHHHHhcCCCCCCCEEEEeCCccCC
Confidence 57899999843 34567777754 368999999999953
No 106
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=64.01 E-value=1.3e+02 Score=33.56 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc-------CCccEEEEcCceeec
Q 008327 284 DSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL-------KNIDIVFHIGDICYA 339 (570)
Q Consensus 284 ~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~-------~~~Dfvl~~GDi~Y~ 339 (570)
+..++++.++|.+.+. .++. .+.+...++-+ .+...++.+||.+..
T Consensus 223 ~e~v~v~~isDih~GS----k~F~------~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDG 275 (481)
T COG1311 223 DERVYVALISDIHRGS----KEFL------EDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDG 275 (481)
T ss_pred CcceEEEEEeeeeccc----HHHH------HHHHHHHHHHhcCCcccccceEEEEEecccccc
Confidence 3457899999999853 3331 11222333322 234799999999953
No 107
>PHA02239 putative protein phosphatase
Probab=61.01 E-value=26 Score=35.26 Aligned_cols=39 Identities=13% Similarity=0.328 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc----CCccEEEEcCceeecCCc
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL----KNIDIVFHIGDICYANGY 342 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~----~~~Dfvl~~GDi~Y~~g~ 342 (570)
|++++||.|.. ...++++++.. ...|.++++||++. .|.
T Consensus 2 ~~~~IsDIHG~---------------~~~l~~ll~~i~~~~~~~d~li~lGD~iD-rG~ 44 (235)
T PHA02239 2 AIYVVPDIHGE---------------YQKLLTIMDKINNERKPEETIVFLGDYVD-RGK 44 (235)
T ss_pred eEEEEECCCCC---------------HHHHHHHHHHHhhcCCCCCEEEEecCcCC-CCC
Confidence 68999999842 12344444432 23599999999995 443
No 108
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=59.29 E-value=19 Score=33.99 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=14.0
Q ss_pred CCccEEEEcCceeecC
Q 008327 325 KNIDIVFHIGDICYAN 340 (570)
Q Consensus 325 ~~~Dfvl~~GDi~Y~~ 340 (570)
.++|.++++||+.+..
T Consensus 40 ~~~d~lii~GDl~~~~ 55 (172)
T cd07391 40 YGPERLIILGDLKHSF 55 (172)
T ss_pred cCCCEEEEeCcccccc
Confidence 6899999999999754
No 109
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=58.22 E-value=13 Score=37.05 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=27.3
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc----C--------CccEEEEcCceeec
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL----K--------NIDIVFHIGDICYA 339 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~----~--------~~Dfvl~~GDi~Y~ 339 (570)
|++++||.|.. +..+++++++. + +.|.++++||++..
T Consensus 2 ~i~vigDIHG~---------------~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr 50 (234)
T cd07423 2 PFDIIGDVHGC---------------YDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR 50 (234)
T ss_pred CeEEEEECCCC---------------HHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC
Confidence 68999999853 34566777654 1 36899999999953
No 110
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=56.36 E-value=29 Score=34.92 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcC-----------CccEEEEcCceeecCCc
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLK-----------NIDIVFHIGDICYANGY 342 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~-----------~~Dfvl~~GDi~Y~~g~ 342 (570)
|+.++||.|.. ...+++++++.. .-|-++++||++. .|.
T Consensus 2 ~~~vIGDIHG~---------------~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliD-RGp 51 (245)
T PRK13625 2 KYDIIGDIHGC---------------YQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTD-RGP 51 (245)
T ss_pred ceEEEEECccC---------------HHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccC-CCc
Confidence 68999999742 456677776531 2478999999995 453
No 111
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=47.06 E-value=28 Score=34.49 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=26.5
Q ss_pred EEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcC----------CccEEEEcCceeecCCc
Q 008327 289 VIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLK----------NIDIVFHIGDICYANGY 342 (570)
Q Consensus 289 f~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~----------~~Dfvl~~GDi~Y~~g~ 342 (570)
+.++||.|.. +..+++++++.. ..|.++++||++. .|.
T Consensus 1 ~~vIGDIHG~---------------~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~ID-RGp 48 (222)
T cd07413 1 YDFIGDIHGH---------------AEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLID-RGP 48 (222)
T ss_pred CEEEEeccCC---------------HHHHHHHHHHcCCCccccccCCCCCEEEEeCcccC-CCC
Confidence 3689999743 456777776541 3579999999994 443
No 112
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=44.29 E-value=33 Score=35.27 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=33.7
Q ss_pred HHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCe-EEEeCCccc
Q 008327 393 RFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVD-IAVFGHVHN 460 (570)
Q Consensus 393 ~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~Vd-lvlsGH~H~ 460 (570)
++|+.+|+...+-.-| ++..|-| + ..+ .+.+.+|+++|+.| ||+.||+=.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E----~eq-p~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK-----------E----KEM-PEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec-----------c----hhc-hHHHHHHHHHhCCCEEEEeCchhh
Confidence 5699999876443323 2223322 1 123 57999999999999 789999954
No 113
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=44.05 E-value=46 Score=37.35 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHh--cCCccEEEEcCceeecCC
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQD--LKNIDIVFHIGDICYANG 341 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~--~~~~Dfvl~~GDi~Y~~g 341 (570)
..+||++..|.|.+... +.- .....+..++.+|+.- .+++|||+..||+...+-
T Consensus 12 ntirILVaTD~HlGY~E--kD~-vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNk 67 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGE--KDA-VRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENK 67 (646)
T ss_pred cceEEEEeecCcccccc--CCc-ccccchHHHHHHHHHHHHhcCCcEEEecCcccccCC
Confidence 45999999999986431 110 0123466777777653 378999999999998764
No 114
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=41.93 E-value=50 Score=39.18 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=27.5
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCccccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNYE 462 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Ye 462 (570)
....-+|++.|-.+ ..... . ..+ ...-.. +.+ -+||++|.||.|..-
T Consensus 243 ~GaDvIIaLsH~G~--~~d~~--~-----~~~-ena~~~-l~~v~gID~IlgGHsH~~~ 290 (780)
T PRK09418 243 EGADVIVALAHSGV--DKSGY--N-----VGM-ENASYY-LTEVPGVDAVLMGHSHTEV 290 (780)
T ss_pred cCCCEEEEEeccCc--ccccc--c-----ccc-hhhhHH-HhcCCCCCEEEECCCCCcc
Confidence 35678999999875 22110 0 011 111111 344 489999999999754
No 115
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=40.67 E-value=40 Score=28.69 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=22.0
Q ss_pred EEEEeCCCCCCCEEEEEEeeec--CCCcccccceEEEEe
Q 008327 241 HTGFLRELWPNAMYTYKLGHRL--FNGTYIWSSEYQFKA 277 (570)
Q Consensus 241 h~a~l~gL~Pgt~Y~Yrvg~~~--~dg~~~wS~~~~F~T 277 (570)
-.++|.+|+|++.|.-+|.... .+..+.||+..-.+|
T Consensus 67 ~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 67 SSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred CEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 3567999999999999998721 112234566554443
No 116
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=39.14 E-value=72 Score=33.05 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=27.7
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcC---CccEEEEcCceeecC
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLK---NIDIVFHIGDICYAN 340 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~---~~Dfvl~~GDi~Y~~ 340 (570)
+..++||.|.. ...+++++++.. ..|-++++||++..+
T Consensus 2 ~~YvIGDIHGc---------------~daL~~LL~~i~f~~~~D~l~~lGDlVdRG 42 (279)
T TIGR00668 2 ATYLIGDLHGC---------------YDELQALLERVEFDPGQDTLWLTGDLVARG 42 (279)
T ss_pred cEEEEEcccCC---------------HHHHHHHHHHhCcCCCCCEEEEeCCccCCC
Confidence 46799999753 345677777642 578999999999543
No 117
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=38.97 E-value=67 Score=32.80 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=26.7
Q ss_pred EEEecCCCCCCCCCCcccccccchHHHHHHHHHhc---CCccEEEEcCceeecCCc
Q 008327 290 IIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL---KNIDIVFHIGDICYANGY 342 (570)
Q Consensus 290 ~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~---~~~Dfvl~~GDi~Y~~g~ 342 (570)
.++||.|.. ...+++++++. .+.|.++++||++. .|.
T Consensus 2 yvIGDIHG~---------------~~~L~~LL~~i~~~~~~D~Li~lGDlVd-RGp 41 (257)
T cd07422 2 YAIGDIQGC---------------YDELQRLLEKINFDPAKDRLWLVGDLVN-RGP 41 (257)
T ss_pred EEEECCCCC---------------HHHHHHHHHhcCCCCCCCEEEEecCcCC-CCc
Confidence 589999743 34567777654 25799999999995 443
No 118
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=37.93 E-value=50 Score=41.05 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCccccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNYE 462 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Ye 462 (570)
....-+|++.|-.+ .... ...+ . .+....|.++ -+||+++.||.|..-
T Consensus 233 ~gaDvII~l~H~G~--~~~~--~~~~-----~-en~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 233 GGADVIVALAHSGI--ESEY--QSSG-----A-EDSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred cCCCEEEEEeccCc--CCCC--CCCC-----c-chHHHHHHHhCCCCcEEEeCCCcccc
Confidence 45678999999876 2111 0111 1 2344556655 589999999999863
No 119
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=36.67 E-value=1.7e+02 Score=31.45 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHCCCeEEEeCCccc
Q 008327 437 GRESLQKLWQKYKVDIAVFGHVHN 460 (570)
Q Consensus 437 ~r~~l~~L~~ky~VdlvlsGH~H~ 460 (570)
+...++.||++-+..-.|+.|.|.
T Consensus 206 GSp~~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 206 GSPALEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred CChHHHHHHHHhCcchhhhhhHhh
Confidence 457889999999999999999996
No 120
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=35.60 E-value=52 Score=34.05 Aligned_cols=50 Identities=22% Similarity=0.430 Sum_probs=33.5
Q ss_pred HHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCe-EEEeCCccc
Q 008327 393 RFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVD-IAVFGHVHN 460 (570)
Q Consensus 393 ~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~Vd-lvlsGH~H~ 460 (570)
++|+.+|+...+-.-| ....|-| + ..+ -+.+..|+++|+.| |||+||+=.
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E----~eq-p~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP-----------E----KEQ-PEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec-----------h----HHh-hHHHHHHHHHcCCCEEEEeCchhh
Confidence 5699999876433322 2222221 1 123 57899999999999 789999974
No 121
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=35.48 E-value=5.3e+02 Score=26.84 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHH
Q 008327 285 SLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTA 351 (570)
Q Consensus 285 ~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~ 351 (570)
.-.||+.++|.|.-..+ + ++...-|+.+|+||... .|...+-..|.+
T Consensus 60 ~~~r~VcisdtH~~~~~------------------i-~~~p~gDvlihagdfT~-~g~~~ev~~fn~ 106 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFD------------------I-NDIPDGDVLIHAGDFTN-LGLPEEVIKFNE 106 (305)
T ss_pred CceEEEEecCcccccCc------------------c-ccCCCCceEEeccCCcc-ccCHHHHHhhhH
Confidence 34799999999865321 1 13467789999999984 343332234444
No 122
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=35.26 E-value=48 Score=34.78 Aligned_cols=38 Identities=26% Similarity=0.201 Sum_probs=24.5
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCcccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNY 461 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Y 461 (570)
....-+|++.|-.- +. +. ..|.++ -++|++|.||.|.+
T Consensus 206 ~gvD~II~LsH~g~-~~------------~d------~~lA~~v~gIDvIigGHsH~~ 244 (313)
T cd08162 206 QGINKIILLSHLQQ-IS------------IE------QALAALLSGVDVIIAGGSNTL 244 (313)
T ss_pred CCCCEEEEEecccc-cc------------hH------HHHHhcCCCCCEEEeCCCCcc
Confidence 34667889999631 11 00 123444 48999999999975
No 123
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=34.45 E-value=94 Score=32.60 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=24.9
Q ss_pred EEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--------CCccEEEEcCceeecCC
Q 008327 288 QVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--------KNIDIVFHIGDICYANG 341 (570)
Q Consensus 288 rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--------~~~Dfvl~~GDi~Y~~g 341 (570)
+++++||.|.. +..++++++.+ ...+.++++||++. .|
T Consensus 3 ~iyaIGDIHG~---------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVD-RG 48 (304)
T cd07421 3 VVICVGDIHGY---------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCD-RG 48 (304)
T ss_pred eEEEEEeccCC---------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCC-CC
Confidence 68999999853 23444444321 13568999999995 44
No 124
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=33.09 E-value=61 Score=34.28 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHCCCeEEEeCCccc
Q 008327 437 GRESLQKLWQKYKVDIAVFGHVHN 460 (570)
Q Consensus 437 ~r~~l~~L~~ky~VdlvlsGH~H~ 460 (570)
+.+.++..+++++.++++=||.-.
T Consensus 252 G~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 252 GPDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred CHHHHHHHHHHCCCcEEEEcChhh
Confidence 467888889999999999998854
No 125
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=32.72 E-value=56 Score=31.75 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=24.7
Q ss_pred EEEecCCCCCCCCCCcccccccchHHHHHHHHHhc--CCccEEEEcCceeec
Q 008327 290 IIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL--KNIDIVFHIGDICYA 339 (570)
Q Consensus 290 ~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~--~~~Dfvl~~GDi~Y~ 339 (570)
+++||.|.. ...+.++++.. ...|.++++||++..
T Consensus 1 ~~igDiHg~---------------~~~l~~~l~~~~~~~~d~li~lGD~vdr 37 (225)
T cd00144 1 YVIGDIHGC---------------LDDLLRLLEKIGFPPNDKLIFLGDYVDR 37 (225)
T ss_pred CEEeCCCCC---------------HHHHHHHHHHhCCCCCCEEEEECCEeCC
Confidence 378999742 34556666653 368999999999954
No 126
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=32.65 E-value=59 Score=27.93 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.0
Q ss_pred ceEEEEEeCCCCCCCEEEEEEee
Q 008327 238 GYIHTGFLRELWPNAMYTYKLGH 260 (570)
Q Consensus 238 g~~h~a~l~gL~Pgt~Y~Yrvg~ 260 (570)
+-+.++.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999954
No 127
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=32.26 E-value=4.2e+02 Score=32.60 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=65.2
Q ss_pred eEEEEEEeeccc--ceEEEEEecCCCCcEEEEeecceecCCCCCCccceeecCCCCCeEEEEEEeCCCCCCCccEEEEee
Q 008327 127 GSLKLQLINQRS--DFSFVLFTNGLLNPKVVAVSNKVTFTNPNAPVYPRLAQGKVWNEMTVTWTSGYGINEAEPFVEWGP 204 (570)
Q Consensus 127 gs~~~~l~n~R~--~~~f~~f~~~~~~~~l~a~s~~v~f~~~~~P~~~~La~~~~~~~m~V~W~T~~~~~~~~~~V~yg~ 204 (570)
|-|+++=+.++. .|.++.=+. ++. +-+..+.+--.-|.+|..+++.-.. .+.++|+|.-+.+ ...|...|-.
T Consensus 577 g~L~i~nv~l~~~G~Y~C~aqT~-~Ds--~s~~A~l~V~gpPgpP~~v~~~~i~-~t~~~lsW~~g~d--n~SpI~~Y~i 650 (1051)
T KOG3513|consen 577 GRLTIANVSLEDSGKYTCVAQTA-LDS--ASARADLLVRGPPGPPPDVHVDDIS-DTTARLSWSPGSD--NNSPIEKYTI 650 (1051)
T ss_pred cceEEEeeccccCceEEEEEEEe-ecc--hhcccceEEecCCCCCCceeEeeec-cceEEEEeecCCC--CCCCceEEeE
Confidence 446666556664 355544331 111 1112222223356788878775333 6899999998875 3367878865
Q ss_pred cCCC----CceecccceEEecccccCCCCccccccCCceEEEEEeCCCCCCCEEEEEEeee
Q 008327 205 KGGD----RTYSPAGTLTFGRGSMCGAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLGHR 261 (570)
Q Consensus 205 ~~~~----~~~~~a~~~ty~~~~mc~~pa~~~g~~~~g~~h~a~l~gL~Pgt~Y~Yrvg~~ 261 (570)
.... .|..++ ++ |. .+.|- ++++..+|.|-..|.+||..-
T Consensus 651 q~rt~~~~~W~~v~-~v----------p~-----~~~~~-~sa~vv~L~Pwv~YeFRV~Av 694 (1051)
T KOG3513|consen 651 QFRTPFPGKWKAVT-TV----------PG-----NITGD-ESATVVNLSPWVEYEFRVVAV 694 (1051)
T ss_pred EecCCCCCcceEee-EC----------CC-----cccCc-cceeEEccCCCcceEEEEEEE
Confidence 4332 222222 11 11 12345 679999999999999999865
No 128
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=31.83 E-value=61 Score=37.48 Aligned_cols=46 Identities=30% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCcccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNY 461 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Y 461 (570)
....-+|++.|-.+ ..... ....+ +.... +.+ -+||+++.||.|..
T Consensus 194 ~gaDvII~LsH~G~--~~d~~----~~~~e----n~~~~-l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGI--SADPY----QPGAE----NSAYY-LTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCc--CCCcc----ccccc----hHHHH-HhcCCCCCEEEcCCCCcc
Confidence 34678999999875 22110 00111 11122 344 58999999999974
No 129
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=30.52 E-value=75 Score=37.95 Aligned_cols=62 Identities=21% Similarity=0.271 Sum_probs=32.7
Q ss_pred eCCCCCCCCCeEEEEEecCCCCCCCCCCcccc--cccchHHHHHHHHHhc--CCc-cEEEEcCceeec
Q 008327 277 ASPYPGQDSLQQVIIFGDMGKDEADGSNEYNN--FQRGSLNTTRQLIQDL--KNI-DIVFHIGDICYA 339 (570)
Q Consensus 277 T~p~~g~~~~~rf~v~GD~g~~~~~g~~~~~~--~q~~s~~t~~~i~~~~--~~~-Dfvl~~GDi~Y~ 339 (570)
+.|..+....+||+...|+|..-.. ..-|.+ ...+.+..+..++++. +++ -+++..||++..
T Consensus 106 ~~~~~~~~~~LtIL~TnDiHg~l~~-~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQG 172 (814)
T PRK11907 106 SKPVEGQTVDVRILSTTDLHTNLVN-YDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQG 172 (814)
T ss_pred CCCccCCceEEEEEEEEeecCCccc-ccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 4454444556899999999976321 100110 0112233333444432 222 488999999864
No 130
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=28.17 E-value=1.1e+02 Score=34.88 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHC--CCeE-EEeCCccc
Q 008327 389 TEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKY--KVDI-AVFGHVHN 460 (570)
Q Consensus 389 ~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky--~Vdl-vlsGH~H~ 460 (570)
-.|.+|-.+.++. ..-.-+|+++|.|. ... . + ++.+...+.++ ++++ ||-||.|.
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~--~~~-------~--e---~~~~~~~ir~~~p~t~IqviGGHshi 268 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPV--RDD-------D--E---WKSLHAEIRKVHPNTPIQVIGGHSHI 268 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEeccccc--ccc-------h--h---hhhHHHHHhhhCCCCceEEECchhhh
Confidence 3577888777776 45667899999996 211 0 1 23344444443 6788 99999997
No 131
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.02 E-value=77 Score=26.14 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=17.8
Q ss_pred eEEEEEeCCCCCCCEEEEEEe
Q 008327 239 YIHTGFLRELWPNAMYTYKLG 259 (570)
Q Consensus 239 ~~h~a~l~gL~Pgt~Y~Yrvg 259 (570)
-++++.+.++ +|..|.|++.
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~ 59 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLD 59 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEEC
Confidence 4678899999 9999999996
No 132
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.81 E-value=72 Score=28.11 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.2
Q ss_pred ceEEEEEeCCCCCCCEEEEEEee
Q 008327 238 GYIHTGFLRELWPNAMYTYKLGH 260 (570)
Q Consensus 238 g~~h~a~l~gL~Pgt~Y~Yrvg~ 260 (570)
+-++++.+.++.+|+.|-|+|..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999973
No 133
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=27.64 E-value=1.2e+02 Score=31.56 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred eEEEEeCCCCCCCCCeEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcC-------CccEEEEcCceeecC----
Q 008327 272 EYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLK-------NIDIVFHIGDICYAN---- 340 (570)
Q Consensus 272 ~~~F~T~p~~g~~~~~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~-------~~Dfvl~~GDi~Y~~---- 340 (570)
.|....... +...+|+++||.+.+. +..++.++++.+.++ .|-.++..|+++...
T Consensus 16 ~~~~~~~~~---~~~~~~VilSDV~LD~-----------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~ 81 (291)
T PTZ00235 16 EYEIIVRKN---DKRHNWIIMHDVYLDS-----------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYN 81 (291)
T ss_pred eEEEEEecC---CCceEEEEEEeeccCC-----------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCC
Confidence 444444332 3347899999998864 234555666665442 278999999998652
Q ss_pred -CchhHHHHHHHhhcc-cccCCCeEEEEEEEEECCEEEEEEeCCC
Q 008327 341 -GYISQWDQFTAQIEP-IASTVPYMIARYSTDYGMFRFCIADTEQ 383 (570)
Q Consensus 341 -g~~~~wd~f~~~i~~-~~s~vP~m~~~YSfd~G~vhFi~LDTe~ 383 (570)
.....+.+.|+.+.. +.++.|-+ ....+||.+-.-.
T Consensus 82 ~~~~~~yk~~Fd~La~llls~fp~L-------~~~s~fVFVPGpn 119 (291)
T PTZ00235 82 RNFHKVYIKGFEKLSVMLISKFKLI-------LEHCYLIFIPGIN 119 (291)
T ss_pred CCchHHHHHHHHHHHHHHHHhChHH-------HhcCeEEEECCCC
Confidence 122334555555543 34455544 2357777776543
No 134
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.60 E-value=77 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=20.1
Q ss_pred ceEEEEEeCCCCCCCEEEEEEee
Q 008327 238 GYIHTGFLRELWPNAMYTYKLGH 260 (570)
Q Consensus 238 g~~h~a~l~gL~Pgt~Y~Yrvg~ 260 (570)
+-++++.+.++.+|..|.|++..
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~ 68 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKV 68 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEE
Confidence 45788999999999999999965
No 135
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=27.19 E-value=94 Score=36.15 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=27.0
Q ss_pred CCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHH-CCCeEEEeCCcccc
Q 008327 405 QKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQK-YKVDIAVFGHVHNY 461 (570)
Q Consensus 405 ~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~k-y~VdlvlsGH~H~Y 461 (570)
....-+|++.|-.+ .... .....+. .... +.+ -+||+++.||.|..
T Consensus 217 ~gaDvII~LsH~G~--~~d~----~~~~aen----~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 217 KGADIVVAIPHSGI--SADP----YKAMAEN----SVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred cCCCEEEEEecCCc--CCCC----ccccccc----hhHH-HhcCCCCCEEEeCCCCcc
Confidence 34678999999875 2211 0001111 1122 334 58999999999974
No 136
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=23.31 E-value=4.2e+02 Score=22.58 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCeEEEeCCccc
Q 008327 438 RESLQKLWQKYKVDIAVFGHVHN 460 (570)
Q Consensus 438 r~~l~~L~~ky~VdlvlsGH~H~ 460 (570)
.+.+....+++++|+++-|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 56888888999999888887754
No 137
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=22.54 E-value=3.1e+02 Score=28.67 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=42.3
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHhcccCCCCCEEEEEeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEE
Q 008327 374 FRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIA 453 (570)
Q Consensus 374 vhFi~LDTe~~~~~g~~Q~~WLe~dL~~~~r~~~pwvIv~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~Vdlv 453 (570)
+.++.+||...| .+-+++.++.-+.. .-+.+|+.......++...+..........+-++.|...+.++++|++
T Consensus 50 ~~vl~IDTG~~F---~Et~efrd~~a~~~---gl~l~v~~~~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~ 123 (294)
T TIGR02039 50 FPLLHVDTGWKF---REMIAFRDHMVAKY---GLRLIVHSNEEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAA 123 (294)
T ss_pred eEEEEEecCCCC---HHHHHHHHHHHHHh---CCCEEEEechhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEE
Confidence 456789998766 45777776654442 233333222111111111110000001111224678888999999999
Q ss_pred EeCCccc
Q 008327 454 VFGHVHN 460 (570)
Q Consensus 454 lsGH~H~ 460 (570)
|.||.=.
T Consensus 124 itG~RRD 130 (294)
T TIGR02039 124 FGGARRD 130 (294)
T ss_pred EecCChh
Confidence 9999654
No 138
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=21.42 E-value=1.3e+02 Score=31.40 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHCCCeEEEeCCccc
Q 008327 437 GRESLQKLWQKYKVDIAVFGHVHN 460 (570)
Q Consensus 437 ~r~~l~~L~~ky~VdlvlsGH~H~ 460 (570)
+.+.++..+++++.++++=||.=.
T Consensus 221 G~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 221 SYRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred CHHHHHHHHHHcCCeEEEEecccc
Confidence 367889999999999999999853
No 139
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=21.14 E-value=1.4e+02 Score=28.36 Aligned_cols=18 Identities=17% Similarity=0.133 Sum_probs=14.8
Q ss_pred EeCCCCCCCEEEEEEeee
Q 008327 244 FLRELWPNAMYTYKLGHR 261 (570)
Q Consensus 244 ~l~gL~Pgt~Y~Yrvg~~ 261 (570)
.+++|.|||+|+.+....
T Consensus 105 qVtNL~pGTkY~isY~Vt 122 (184)
T PF07353_consen 105 QVTNLQPGTKYYISYLVT 122 (184)
T ss_pred EeeccCCCcEEEEEEEEe
Confidence 479999999999777654
No 140
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=20.63 E-value=3.6e+02 Score=32.32 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=65.9
Q ss_pred CCccceeecCC-CCCeEEEEEEeCCCCCCC----ccEEEEeecCCCCceecccceEEecccccCCCCcccccc----C--
Q 008327 168 APVYPRLAQGK-VWNEMTVTWTSGYGINEA----EPFVEWGPKGGDRTYSPAGTLTFGRGSMCGAPARTVGWR----D-- 236 (570)
Q Consensus 168 ~P~~~~La~~~-~~~~m~V~W~T~~~~~~~----~~~V~yg~~~~~~~~~~a~~~ty~~~~mc~~pa~~~g~~----~-- 236 (570)
++.-++++.+. +.+++.+.|..-... +. .-.+.|.+.+... ...|...+-||.- .|. +
T Consensus 488 e~~~l~~~~~~~~~dsi~lrW~~~~~~-d~r~llg~~~~yKEaP~qN------vT~~dg~~aCg~~----~W~~~~v~~~ 556 (1025)
T KOG4258|consen 488 EDLVLQFSSTVTSADSILLRWERYQPP-DMRDLLGFLLHYKEAPFQN------VTEEDGRDACGSN----SWNVVDVDPP 556 (1025)
T ss_pred ccceeeeeeEEeecceeEEEecccCCc-chhhhheeeEeeccCCccc------cceecCccccccC----cceEEeccCC
Confidence 45556666655 478899999765431 11 1234444433211 1235566667632 121 0
Q ss_pred ---C--ceEEEEEeCCCCCCCEEEEEEeeecC----CCcccccceEEEEeCCCCCCCCCeEEEEEecC
Q 008327 237 ---P--GYIHTGFLRELWPNAMYTYKLGHRLF----NGTYIWSSEYQFKASPYPGQDSLQQVIIFGDM 295 (570)
Q Consensus 237 ---~--g~~h~a~l~gL~Pgt~Y~Yrvg~~~~----dg~~~wS~~~~F~T~p~~g~~~~~rf~v~GD~ 295 (570)
| +..-...|.||+|.|.|.|-|..-.. +.-.+-|++..|+|.|... ..++.++.-.+.
T Consensus 557 ~~~p~~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P-spPl~~ls~sns 623 (1025)
T KOG4258|consen 557 DLIPNDGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP-SPPLDVLSKSNS 623 (1025)
T ss_pred cCCCccccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC-CCcchhhhccCc
Confidence 1 23337889999999999998875421 1112458999999987532 334555554444
No 141
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=20.60 E-value=9.3e+02 Score=24.70 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=84.5
Q ss_pred eEEEEEecCCCCCCCCCCcccccccchHHHHHHHHHhcCCccEEEEcCceeecCCchhHHHHHHHhhc------------
Q 008327 287 QQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYISQWDQFTAQIE------------ 354 (570)
Q Consensus 287 ~rf~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~~~~Dfvl~~GDi~Y~~g~~~~wd~f~~~i~------------ 354 (570)
+|++++||+=... |.. ...+.+.++.++ -++||+|..|-++ +.|.---|+.|.+.++
T Consensus 1 mriLfiGDvvGk~--Gr~-------~v~~~Lp~lk~k-yk~dfvI~N~ENa-a~G~Git~k~y~~l~~~G~dviT~GNH~ 69 (266)
T COG1692 1 MRILFIGDVVGKP--GRK-------AVKEHLPQLKSK-YKIDFVIVNGENA-AGGFGITEKIYKELLEAGADVITLGNHT 69 (266)
T ss_pred CeEEEEecccCcc--hHH-------HHHHHhHHHHHh-hcCcEEEEcCccc-cCCcCCCHHHHHHHHHhCCCEEeccccc
Confidence 4899999984321 100 011223334333 4799999999998 4443222333333322
Q ss_pred -------ccccCCCeEEEE------------EEEEECCEEEEEEeCC--CCCCC-CHHHHHHHHHHHhcccCCCCCEEEE
Q 008327 355 -------PIASTVPYMIAR------------YSTDYGMFRFCIADTE--QDWRE-GTEQYRFIEHCLASVDRQKQPWLIF 412 (570)
Q Consensus 355 -------~~~s~vP~m~~~------------YSfd~G~vhFi~LDTe--~~~~~-g~~Q~~WLe~dL~~~~r~~~pwvIv 412 (570)
.+..+.++++-+ +-|+..+..+.+.+-. ..... -..=.+=+++-|...+ .+++-+||
T Consensus 70 wd~~ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~-~~~~~iiV 148 (266)
T COG1692 70 WDQKEILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIK-LGTDLIIV 148 (266)
T ss_pred ccchHHHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCc-cCCceEEE
Confidence 111233333333 3456666666555532 11110 1112233455555432 45678899
Q ss_pred EeccccccCCCCccccCCCCCcchhHHHHHHHHHHCCCeEEEeCCccccceeeecccceecccCcccccCCCCCeEEEE-
Q 008327 413 LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYERICPIYQNICTNKEKHYYKGSLNGTIHIA- 491 (570)
Q Consensus 413 ~~H~P~~yss~~~~~~~g~~~~~~~r~~l~~L~~ky~VdlvlsGH~H~YeRt~pv~~~~~~~~~~~~y~~~~~g~vyIv- 491 (570)
-+|.-- +|. +.-.-++-+-+|.+|+.=|.|..---+.+ -++||.|+.
T Consensus 149 DFHAEt--TSE---------------K~a~g~yldGrvsavvGTHTHV~TaD~rI---------------L~~GTayiTD 196 (266)
T COG1692 149 DFHAET--TSE---------------KNAFGWYLDGRVSAVVGTHTHVPTADERI---------------LPKGTAYITD 196 (266)
T ss_pred Eccccc--hhh---------------hhhhheEEcCeEEEEEeccCcccccccee---------------cCCCcEEEec
Confidence 899642 111 11112233457899999999974322211 247899986
Q ss_pred eCCCCC
Q 008327 492 AGGAGA 497 (570)
Q Consensus 492 ~G~aG~ 497 (570)
+|+-|.
T Consensus 197 vGMtG~ 202 (266)
T COG1692 197 VGMTGP 202 (266)
T ss_pred Cccccc
Confidence 455554
No 142
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=20.33 E-value=4.6e+02 Score=25.10 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=25.5
Q ss_pred EEEEecCCCCCCCCCCcccccccchHHHHHHHHHhc---CCccEEEEcCceeecC
Q 008327 289 VIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDL---KNIDIVFHIGDICYAN 340 (570)
Q Consensus 289 f~v~GD~g~~~~~g~~~~~~~q~~s~~t~~~i~~~~---~~~Dfvl~~GDi~Y~~ 340 (570)
|++++|...... ....+.++++++.. .+|+.+|.+|+++...
T Consensus 1 Iv~~Sg~~~~~~----------~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~ 45 (209)
T PF04042_consen 1 IVFASGPFLDSD----------NLSLEPLRDLLSGVEDASKPDVLILMGPFIDSP 45 (209)
T ss_dssp EEEEES--CTTT-----------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTT
T ss_pred CEEEecCccCCC----------HhHHHHHHHHHHhccccCCCcEEEEeCCCcCcc
Confidence 567888876532 11245566666532 4699999999999753
Done!