BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008328
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 21 PLHLAALKGDWDFARNFFN--LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP 78
PLH+A+ G +N +P V++ +T LH+AA A T + L L
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKV----ETPLHMAARAGHTEVAKYL--LQNK 70
Query: 79 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
+ + K T L AA G T + ++++ N P++ G TPL +AA GH E +
Sbjct: 71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETV 129
Query: 139 WYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH--HPQLAMARDGNGETALHV 195
L + + L G VA L++ HP A NG T LHV
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHV 185
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 16/199 (8%)
Query: 3 LLKCLKGGVERNCFT--SYAPLHLAALKGDWDFARNFF--NLNPEAVCVRISRNQDTALH 58
+L L+ + C T + PLH+AA G A + +P A +N T LH
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA----GKNGLTPLH 184
Query: 59 IAAGARRTLFVQELVNLMTPEDLALRNKV--GNTALCFAAVSGVTKIAEVMVNKNRELPS 116
+A ++V L+ P + + G T L AA ++A ++ +
Sbjct: 185 VAVHHNNL----DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-N 239
Query: 117 IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 176
+G TPL +AA GH EM+ L S +L + + L V G VA D++
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA-DVLI 298
Query: 177 HHPQLAMARDGNGETALHV 195
H + A G T LHV
Sbjct: 299 KHGVMVDATTRMGYTPLHV 317
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 21 PLHLAALKGDWDFARNFFNLNPEAVCV-RISRNQDTALHIAAGARRTLFVQELVNLMTPE 79
PLHL A +G A V V +R T LH+A+ V+ L L
Sbjct: 281 PLHLVAQEGHVPVADVLIK---HGVMVDATTRMGYTPLHVASHYGNIKLVKFL--LQHQA 335
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + K+G + L AA G T I +++ KN P+ + G TPL +A LG+ +
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLGYISVTD 394
Query: 140 YLYSVTKE 147
L VT E
Sbjct: 395 VLKVVTDE 402
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 174
P++ K TPL MAA GH E+ YL + + K +D L G ++ L
Sbjct: 40 PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Query: 175 IQH--HPQLAMARDGNGETALHVLARK 199
+++ +P LA G T LH+ AR+
Sbjct: 100 LENNANPNLATTA---GHTPLHIAARE 123
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNR 112
T LH AA +E+V L+ + D+ ++ G T L +AA G +I +++++K
Sbjct: 39 TPLHYAAKEGH----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 113 ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED 154
++ + + + G TPL AA GHKE++ L ++K D+ D
Sbjct: 95 DV-NAKDSDGRTPLHYAAKEGHKEIVKLL--ISKGADVNTSD 133
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L +AA G +I +++++K ++ + + + G TPL AA GHKE++
Sbjct: 29 DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 140 YLYSVTKEEDLKEED 154
L S + + K+ D
Sbjct: 88 LLISKGADVNAKDSD 102
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNR 112
T LH AA +E+V L+ + D ++ G T L +AA +G +I +++++K
Sbjct: 39 TPLHYAAENGH----KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 113 ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED 154
+ P+ + + G TPL AA GHKE++ L S + + + D
Sbjct: 95 D-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
G T L +AA +G +I +++++K + P+ + + G TPL AA GHKE++ L S +
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 148 EDLKEED 154
+ K+ D
Sbjct: 96 PNAKDSD 102
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 174
P+ + G TPL AA GHKE++ L S + + K+ D L + G ++ + L
Sbjct: 30 PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI-VKL 88
Query: 175 IQHHPQLAMARDGNGETALHVLA 197
+ A+D +G T LH A
Sbjct: 89 LLSKGADPNAKDSDGRTPLHYAA 111
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
G T L AA G +I EV++ ++ ++ N G TPL +AA LGH E++ L +
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN-GTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 148 EDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
+ K+ I L G ++ L++H + A+D G+TA +
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDI 140
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNR 112
T LH+AA +E+V L+ + D ++ G T L AA +G ++ ++++++
Sbjct: 39 TPLHLAAENGH----KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 113 ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED 154
+ P+ + + G TPL +AA GHKE++ L S + + + D
Sbjct: 95 D-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA +G ++ ++++++ + P+ + + G TPL +AA GHKE++
Sbjct: 29 DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 140 YLYSVTKEEDLKEED 154
L S + + K+ D
Sbjct: 88 LLLSQGADPNAKDSD 102
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
G TPL +AA GHKE++ L S + + K+ D L + G +V + L+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV-VKLLLSQGAD 95
Query: 182 AMARDGNGETALHVLA 197
A+D +G+T LH+ A
Sbjct: 96 PNAKDSDGKTPLHLAA 111
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVN 109
S++ +T LH AA V++L L D+ R+K GNT L AA +G +I ++++
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKL--LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 110 KNRELPSIRGNKGATPLCMAALLGHKEMI 138
K ++ + R G TP +A GH E++
Sbjct: 64 KGADV-NARSKDGNTPEHLAKKNGHHEIV 91
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
+K GNT L AA +G + + +++K ++ + R G TPL +AA GH E++ L +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 145 TKEEDLKEED 154
+ + + +D
Sbjct: 65 GADVNARSKD 74
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELVNLM 76
Y PLHLAA +G + + ++++D T LH+AA V+ L L
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVN----AKDKDGYTPLHLAAREGHLEIVEVL--LK 89
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
D+ ++K G T L AA G +I EV++ ++ + + G TP +A GH++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIREGHED 148
Query: 137 M 137
+
Sbjct: 149 I 149
Score = 36.2 bits (82), Expect = 0.051, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ ++K G T L AA G +I EV++ ++
Sbjct: 37 TPLHLAAREGHLEIVEVL--LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 115 PSIRGNKGATPLCMAALLGHKEMI 138
+ + G TPL +AA GH E++
Sbjct: 95 -NAKDKDGYTPLHLAAREGHLEIV 117
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
G TPL +AA GH E++ L + + K++D L G ++ L++ +
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 182 AMARDGNGETALHVLARK 199
A+D +G T LH+ AR+
Sbjct: 95 N-AKDKDGYTPLHLAARE 111
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76
PLHLAA G + + L A +N T LH+AA V+ L L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL--LE 56
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
D+ ++K G T L AA +G ++ ++++ ++ + + G TPL +AA GH E
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE 115
Query: 137 MIWYL 141
++ L
Sbjct: 116 VVKLL 120
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147
G T L AA +G ++ ++++ ++ + + G TPL +AA GH E++ L +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 148 EDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLAR 198
+ K+++ R L +A + L V L L++ + A+D NG T LH+ AR
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKL-LLEAGADV-NAKDKNGRTPLHLAAR 110
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ ++K G T L AA G +I EV++ ++
Sbjct: 37 TPLHLAAREGHLEIVEVL--LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVA 171
+ + G TPL +AA GH E++ L + + +++ ID G D+A
Sbjct: 95 -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIA 150
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELVNLM 76
Y PLHLAA +G + + ++++D T LH+AA V+ L L
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVN----AKDKDGYTPLHLAAREGHLEIVEVL--LK 89
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
D+ ++K G T L AA G +I EV++ ++ + + G TP +A G+++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNED 148
Query: 137 M 137
+
Sbjct: 149 I 149
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
G TPL +AA GH E++ L + + K++D L G ++ L++ +
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 94
Query: 182 AMARDGNGETALHVLARK 199
A+D +G T LH+ AR+
Sbjct: 95 N-AKDKDGYTPLHLAARE 111
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA+ G +I EV++ ++ + G TPL +AAL GH E++
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVE 97
Query: 140 YLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + + + L DAG ++ L+++ + A+D G+TA +
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDI 152
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 38/118 (32%)
Query: 21 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
PLHLAA+KG + V L D
Sbjct: 50 PLHLAAIKGHLEIVE-------------------------------------VLLKHGAD 72
Query: 81 LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
+ +K+G+T L AA+ G +I EV++ KN + G TPL +AA GH E++
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIV 129
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ + G T L AA +G +I EV++ ++
Sbjct: 49 TPLHLAASNGHLEIVEVL--LKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 115 PSIRGNKGATPLCMAALLGHKEMI 138
+ N G TPL +AA GH E++
Sbjct: 107 NAY-DNDGHTPLHLAAKYGHLEIV 129
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA +G +I EV++ KN + G TPL +AA GH E++
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHLAAATGHLEIVE 97
Query: 140 YLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + + + D L G ++ L++H + A+D G+TA +
Sbjct: 98 VLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGKTAFDI 152
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 120 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 179
N G TPL +AA GH E++ L + + + I L G ++ L++H
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 180 QLAMARDGNGETALHVLAR 198
+ A D +G T LH+ A+
Sbjct: 105 DVN-AYDNDGHTPLHLAAK 122
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 7 LKGGVERNC--FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGAR 64
LK G + N T PLHLAA G + L A + T LH+AA
Sbjct: 67 LKNGADVNASDLTGITPLHLAAATGHLEIVEVL--LKHGADVNAYDNDGHTPLHLAAKYG 124
Query: 65 RTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
V+ L L D+ ++K G TA + +G +AE++
Sbjct: 125 HLEIVEVL--LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ ++K G T L AA G +I EV++ ++
Sbjct: 49 TPLHLAAREGHLEIVEVL--LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVA 171
+ + G TPL +AA GH E++ L + + +++ ID G D+A
Sbjct: 107 -NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 32.3 bits (72), Expect = 0.69, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 19 YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD--TALHIAAGARRTLFVQELVNLM 76
Y PLHLAA +G + + ++++D T LH+AA V+ L L
Sbjct: 48 YTPLHLAAREGHLEIVEVLLKAGADVN----AKDKDGYTPLHLAAREGHLEIVEVL--LK 101
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
D+ ++K G T L AA G +I EV++
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181
G TPL +AA GH E++ L + + K++D L G ++ L++ +
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 106
Query: 182 AMARDGNGETALHVLARK 199
A+D +G T LH+ AR+
Sbjct: 107 N-AKDKDGYTPLHLAARE 123
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
D+ ++ GNT L AA +I EV++ ++ + N G+TPL +AAL GH E++
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIV 96
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76
+ + P H+A G+ + ++ ++ + +I+ T LH+A G + Q L+
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-- 128
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
+ +++K L AA G K+ E++ + + + +G TPL A GH +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76
+ + P H+A G+ + ++ ++ + +I+ T LH+A G + Q L+
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-- 128
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
+ +++K L AA G K+ E++ + + + +G TPL A GH +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76
+ + P H+A G+ + ++ ++ + +I+ T LH+A G + Q L+
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-- 128
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
+ +++K L AA G K+ E++ + + + +G TPL A GH +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA +G ++ +++++K ++ + + + G TPL AA GHKE++
Sbjct: 29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVK 87
Query: 140 YLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199
L S + + K+ D L + G +V LI + + D +G T L LAR+
Sbjct: 88 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLD-LARE 145
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 49 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
++R DT LH+AA VQ+L L D+ N+ GN L +A G ++AE +V
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKL--LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 109 NKNRELPSIRGNKGATPL 126
N L SI G P+
Sbjct: 121 -ANGALVSICNKYGEMPV 137
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G+T L AA G +I EV++ ++ + R G TPL +AA GH E++
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVE 97
Query: 140 YLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + + ++ + L D G ++ L++H + A+D G+TA +
Sbjct: 98 VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDI 152
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 120 NKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 179
++G+TPL +AA +GH E++ L + + ++ D L D G ++ L+++
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 180 QLAMARDGNGETALHVLARK 199
+ A+D G T LH+ A +
Sbjct: 105 DVN-AQDAYGLTPLHLAADR 123
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 49 ISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
++R DT LH+AA VQ+L L D+ N+ GN L +A G ++AE +V
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKL--LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 109 NKNRELPSIRGNKGATPL 126
N L SI G P+
Sbjct: 126 -ANGALVSICNKYGEMPV 142
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ + +G+T L AA+ G +I EV++ ++
Sbjct: 49 TPLHLAATYGHLEIVEVL--LKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYL 141
++ G TPL +AA++GH E++ L
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVL 132
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA G +I EV++ ++ +I G+TPL +AAL+GH E++
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ + G+T L AA+ G +I EV++ ++
Sbjct: 49 TPLHLAATYGHLEIVEVL--LKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYL 141
++ G TPL +AA++GH E++ L
Sbjct: 107 NAVD-TWGDTPLHLAAIMGHLEIVEVL 132
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA G +I EV++ ++ +I G+TPL +AAL+GH E++
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IXGSTPLHLAALIGHLEIVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
D+ +KVG T L AA++ +I EV++ ++ +I G TPL + A+ GH E++
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDA-IGETPLHLVAMYGHLEIV 96
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 11/183 (6%)
Query: 20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVN---LM 76
+PLH AA G D + A S +Q T L AA V+ L+ L+
Sbjct: 13 SPLHAAAEAGHVDICHML--VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136
P+D G+T L AA G ++ + +++ + + + + G TP+ A H +
Sbjct: 71 DPKDAE-----GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 137 MIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 196
++ L S + ++++ + L +G D+A L+ L A + +G++ LH+
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIA 184
Query: 197 ARK 199
AR+
Sbjct: 185 ARE 187
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA +G +I EV++ ++ ++ + G TPL +AAL GH E++
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ + G T L AA+ G +I EV++ KN
Sbjct: 49 TPLHLAAFNGHLEIVEVL--LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGAD 105
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYL 141
+ +G TPL +AA+ GH E++ L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVL 132
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 48 RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
+ R +TALH+AA R+ + L L D +++ +G T L A + + +++
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77
Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
+ R + G TPL +AA L + M+ L
Sbjct: 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+AA V+ L L D+ + +G+T L AA G +I EV++ KN
Sbjct: 49 TPLHLAAYWGHLEIVEVL--LKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL-KNGAD 105
Query: 115 PSIRGNKGATPLCMAALLGHKEMIWYL 141
+ + + G TPL +AA GH E++ L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + VG T L AA G +I EV++ KN + G+TPL +AA GH E++
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 140 YLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + + K+++ I L + G ++ L+++ + A+D G+TA +
Sbjct: 98 VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDI 152
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 48 RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
+ R +TALH+AA R+ + L L D +++ +G T L A + + +++
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
+ R + G TPL +AA L + M+ L
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 48 RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
+ R +TALH+AA R+ + L L D +++ +G T L A + + +++
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRL--LEASADAXIQDNMGRTPLHAAVSADAQGVFQIL 74
Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
+ R + G TPL +AA L + M+ L
Sbjct: 75 LRNRATDLDARMHDGTTPLILAARLALEGMLEDL 108
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
G+T L AA+ G +I EV++ KN + GN G TPL +AA H E++
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIV 96
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 11 VERNCFTSYAPLHLAALKGDWDFA----RNFFNLNPEAVCVRISRNQDTALHIAAGARRT 66
V N + + PLHLAA+ G + +N ++N R T LH+AA A
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR------TPLHLAAWADHL 93
Query: 67 LFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
V+ L L D+ ++K G TA + +G +AE++
Sbjct: 94 EIVEVL--LKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 48 RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
+ R +TALH+AA R+ + L L D +++ +G T L A + + +++
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQIL 110
Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
+ R + G TPL +AA L + M+ L
Sbjct: 111 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 144
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + +G+T L AA +G +I EV++ ++ + N GATPL +AA GH E++
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVE 97
Query: 140 YLYSVTKEEDLKE-EDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + + K+ E L +A D L V + L+++ + A+D G+TA +
Sbjct: 98 VLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV-LLKYGADVN-AQDKFGKTAFDI 152
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
D+ + G T L AAVSG +I EV++ ++ + G TPL +AA+ GH E++
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA-DVYGFTPLHLAAMTGHLEIV 96
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 48 RISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
+ R TALH+AA R+ + L L D +++ +G T L A + + +++
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109
Query: 108 VNKNRELPSIRGNKGATPLCMAALLGHKEMIWYL 141
+ R + G TPL +AA L + M+ L
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G+T L AA G +I EV++ ++ ++ + G+TPL +AA GH E++
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS-GSTPLHLAAKRGHLEIVE 97
Query: 140 YLYSVTKEEDLKEEDRI--ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + D+ +D I L D G ++ L+++ + A+D G+TA +
Sbjct: 98 VL--LKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDI 152
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 7 LKGGVERNC--FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD-----TALHI 59
LK G + N F+ PLHLAA +G + + N D T LH+
Sbjct: 67 LKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-------NADDTIGSTPLHL 119
Query: 60 AAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
AA V+ L L D+ ++K G TA + +G +AE++
Sbjct: 120 AADTGHLEIVEVL--LKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 21 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED 80
PLH AA +G+ + R L+ + + TAL+ A V+ L E
Sbjct: 76 PLHEAAKRGNLSWLREC--LDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE- 132
Query: 81 LALRNKVGNTALCFAAVSGVTKIAEVMVNKN-----RELPSIRGNKGATPLCMAALLGHK 135
L +NK+G+TAL AA G I ++++ K R + AT A+LL K
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKK 192
Query: 136 EMIWYLYSVTKEED-LKEED 154
+ + +++ ED L +ED
Sbjct: 193 QGTDAVRTLSNAEDYLDDED 212
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144
++ G TAL A G + + ++ ++ +++ + G+T L A GHKE+ L +V
Sbjct: 180 SQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAV 238
Query: 145 -TKEEDLKEEDRIELLVAVIDAGLYDVA 171
+ + L + D L+ +DAG ++A
Sbjct: 239 PSCDISLTDRDGSTALMVALDAGQSEIA 266
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA SG +I EV++ ++ + G TPL +AA GH E++
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVFGYTPLHLAAYWGHLEIVE 97
Query: 140 YLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + + + D + L G ++ L++H + A+D G+TA +
Sbjct: 98 VLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDI 152
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 8 KGGVERNCFTS--YAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARR 65
+GG E + + + PLHLA + R A + + R+ TA H+A R
Sbjct: 34 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTAAHLACEHRS 91
Query: 66 TLFVQELVNLMTPE--DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGA 123
++ L++ P DL RN G TAL A + + ++++ + ++ ++ G
Sbjct: 92 PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR 151
Query: 124 TPLCMAALLGHKEMIWYL 141
+PL A M+ L
Sbjct: 152 SPLIHAVENNSLSMVQLL 169
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEM 137
D+ +++ G T L A G +I EV++ ++ ++ G TPL +AA +GH E+
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHLEI 95
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 46 CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
C I Q T LH AAG R V+ L L D+ ++K G L A G ++AE
Sbjct: 37 CRDIEGRQSTPLHFAAGYNRVSVVEYL--LQHGADVHAKDKGGLVPLHNACSYGHYEVAE 94
Query: 106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEM 137
++V K+ + ++ TPL AA G E+
Sbjct: 95 LLV-KHGAVVNVADLWKFTPLHEAAAKGKYEI 125
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 46 CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
C I Q T LH AAG R V+ L L D+ ++K G L A G ++AE
Sbjct: 35 CRDIEGRQSTPLHFAAGYNRVSVVEYL--LQHGADVHAKDKGGLVPLHNACSYGHYEVAE 92
Query: 106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEM 137
++V K+ + ++ TPL AA G E+
Sbjct: 93 LLV-KHGAVVNVADLWKFTPLHEAAAKGKYEI 123
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 46 CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105
C I Q T LH AAG R V+ L L D+ ++K G L A G ++AE
Sbjct: 39 CRDIEGRQSTPLHFAAGYNRVSVVEYL--LQHGADVHAKDKGGLVPLHNACSYGHYEVAE 96
Query: 106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEM 137
++V K+ + ++ TPL AA G E+
Sbjct: 97 LLV-KHGAVVNVADLWKFTPLHEAAAKGKYEI 127
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-RIELLVAVIDAGLYDVALDLIQHHPQ 180
G TPL +AA GH E++ L + + K+++ R L +A + L V L L++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL-LLEAGAD 60
Query: 181 LAMARDGNGETALHVLAR 198
+ A+D NG T LH+ AR
Sbjct: 61 V-NAKDKNGRTPLHLAAR 77
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA +G +I EV++ KN + + G TPL +AA GH E++
Sbjct: 31 DVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLAAYDGHLEIVE 89
Query: 140 YLYSVTKEEDLKEEDR---IELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHV 195
L + D+ DR L +A + +G ++ L++H + A+D G TA +
Sbjct: 90 VL--LKHGADVNAYDRAGWTPLHLAAL-SGQLEIVEVLLKHGADVN-AQDALGLTAFDI 144
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 22 LHLAALKGDWDFARNFFNLNP---EAVCVRISRNQDTALHIAAG-------ARRTLFVQE 71
LH AA + DF + LN + + RN TAL I A A L V++
Sbjct: 203 LHQAA--ANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEK 260
Query: 72 LVNLMTPEDLALRNKV----GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC 127
+ D A R G TAL +AA I + +V + + G TP+
Sbjct: 261 GAKVDY--DGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIX 318
Query: 128 MAALLGHKEMIWYL 141
+AA G E++ YL
Sbjct: 319 LAAQEGRIEVVXYL 332
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNREL 114
T LH+ ++ L L D+ +K G T L AA G +I EV++ ++
Sbjct: 49 TPLHLVVNNGHLEIIEVL--LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 115 PSIRGNKGATPLCMAALLGHKEMI 138
++ +G TPL +AA GH E++
Sbjct: 107 NAM-DYQGYTPLHLAAEDGHLEIV 129
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ R+ G T L AA G +I EV++ KN + + + G TPL +AA GH E++
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLL-KNGADVNAKDSLGVTPLHLAARRGHLEIVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 7 LKGGVERNCFTSYA--PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQD-TALHIAAGA 63
LK G + N S PLHLAA +G + V S + T LH+AA
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL---KNGADVNASDSHGFTPLHLAA-K 122
Query: 64 RRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVM 107
R L + E++ L D+ ++K G TA + +G +AE++
Sbjct: 123 RGHLEIVEVL-LKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 38/126 (30%)
Query: 16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNL 75
FT + PLHLAA G + V L
Sbjct: 45 FTGWTPLHLAAHFGHLEIVE-------------------------------------VLL 67
Query: 76 MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 135
D+ ++ +G T L AA G +I EV++ KN + + G TPL +AA GH
Sbjct: 68 KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHL 126
Query: 136 EMIWYL 141
E++ L
Sbjct: 127 EIVEVL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMI 138
D+ ++ G T L AA G +I EV++ ++ + N G TPL +AA+ GH E++
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV-NAEDNFGITPLHLAAIRGHLEIV 96
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 69 VQELVNLMTPEDLALRNKVGNTALCFAAVSGVTK-IAEVMVNKNRELPSIRGNK 121
+QEL ++ D L K+ T+L AV+G + IA+++V ++ +RG+K
Sbjct: 146 IQELAQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIVVKAVTQVAELRGDK 199
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 63 ARRTLFVQELVNLMTPE-DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK 121
A R F+ L L+ + D+ + + GN L AA G ++ E +V R +K
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 122 GATPLCMAALLGHKEMIWYLYS 143
G T +A L G E++ + +
Sbjct: 137 GDTACDLARLYGRNEVVSLMQA 158
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 49 ISRNQDTALHIAAGARRTLFVQELVNLMTP-EDLALRNKVGNTALCFAAVSGVTKIAEVM 107
++ + DTALH+A + F+ L+ E L L+N +G TAL AA+ G E +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 49 ISRNQDTALHIAAGARRTLFVQELVNLMTP-EDLALRNKVGNTALCFAAVSGVTKIAEVM 107
++ + DTALH+A + F+ L+ E L L+N +G TAL AA+ G E +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 50 SRNQDTALHIAAGARRTLFVQELVNLMT-PEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108
R + +H AA R F+ L L+ D+ + + GN L AA G ++ E +V
Sbjct: 67 DRTGNAVIHDAA---RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
R +KG T +A L G E++ + +
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA G +I EV++ ++ + R G TPL +AA +GH E++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-RDIWGRTPLHLAATVGHLEIVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + VG T L AA G +I EV++ KN + + G TPL +AA GH E++
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNADDSLGVTPLHLAADRGHLEVVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 55 TALHIAAGARRTLFVQELVNLMT-PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 113
T + A R F+ L L+ D+ + + GN L AA G ++ E +V
Sbjct: 69 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 114 LPSIRGNKGATPLCMAALLGHKEMIWYLYS 143
R +KG T +A L G E++ + +
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 63 ARRTLFVQELVNLMT-PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK 121
A R F+ L L+ D+ + + GN L AA G ++ E +V R +K
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 122 GATPLCMAALLGHKEMIWYLYS 143
G T +A L G E++ + +
Sbjct: 137 GDTACDLARLYGRNEVVSLMQA 158
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 57 LHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPS 116
+H AA A + +Q L+ D+ + + GN L AA G ++ E +V
Sbjct: 74 IHDAARAGQLDTLQTLLEFQA--DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 117 IRGNKGATPLCMAALLGHKEMIWYLYS 143
R +KG T +A L G E++ + +
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQA 158
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 80 DLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIW 139
D+ + G T L AA G +I EV++ ++ + + G TPL +AA +GH E++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDSWGRTPLHLAATVGHLEIVE 97
Query: 140 YL 141
L
Sbjct: 98 VL 99
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 72 LVNLMTPEDLALRNKVGNT---ALCFAAVSGVTKIAEVMVNKNR------------ELPS 116
L N P D++ R+ VGNT AL A + V V N +L
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEE 227
Query: 117 IRGNKGATPLCMAALLGHKEMIWYL 141
I KG TPL +AA G ++ Y+
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYI 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,941,226
Number of Sequences: 62578
Number of extensions: 630543
Number of successful extensions: 1968
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1769
Number of HSP's gapped (non-prelim): 169
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)