Query 008328
Match_columns 570
No_of_seqs 611 out of 3698
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 23:36:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 9.7E-56 3.3E-60 462.5 28.5 371 7-396 3-389 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2.2E-55 7.4E-60 459.9 30.1 332 6-356 35-370 (437)
3 3utm_A Tankyrase-1; tankyrase, 100.0 6.7E-46 2.3E-50 375.8 23.6 289 7-341 13-322 (351)
4 1wdy_A 2-5A-dependent ribonucl 100.0 2.8E-45 9.5E-50 359.8 26.2 267 16-323 3-281 (285)
5 4g8k_A 2-5A-dependent ribonucl 100.0 5.7E-45 1.9E-49 367.4 28.2 292 16-357 23-328 (337)
6 3utm_A Tankyrase-1; tankyrase, 100.0 5.8E-45 2E-49 368.9 19.0 307 50-402 21-331 (351)
7 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-43 3.7E-48 358.0 21.0 279 50-374 22-323 (337)
8 3d9h_A CDNA FLJ77766, highly s 100.0 3.3E-43 1.1E-47 345.5 23.5 258 15-321 12-280 (285)
9 1wdy_A 2-5A-dependent ribonucl 100.0 5.1E-43 1.7E-47 343.7 22.1 250 51-347 3-268 (285)
10 2fo1_E LIN-12 protein; beta-ba 100.0 2.2E-43 7.5E-48 360.5 18.7 264 12-321 88-372 (373)
11 2xai_A ASB-9, ankyrin repeat a 100.0 2.7E-42 9.2E-47 334.7 23.1 246 17-345 2-251 (261)
12 3d9h_A CDNA FLJ77766, highly s 100.0 9.1E-43 3.1E-47 342.4 19.0 245 50-342 12-265 (285)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 8.3E-42 2.8E-46 329.7 20.9 232 10-318 2-246 (253)
14 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-41 4.4E-46 329.9 22.2 247 52-394 2-248 (261)
15 3ljn_A Hypothetical protein; a 100.0 2.9E-42 9.9E-47 351.4 16.7 271 6-322 8-316 (364)
16 2fo1_E LIN-12 protein; beta-ba 100.0 9.2E-43 3.1E-47 355.9 12.7 258 50-347 91-361 (373)
17 3ljn_A Hypothetical protein; a 100.0 1.1E-41 3.9E-46 347.0 19.2 255 50-345 17-302 (364)
18 3aji_A 26S proteasome non-ATPa 100.0 2.8E-40 9.7E-45 314.2 23.6 228 15-320 3-230 (231)
19 1k1a_A B-cell lymphoma 3-encod 100.0 7.5E-41 2.6E-45 320.2 19.7 230 12-319 3-240 (241)
20 1yyh_A HN1;, notch 1, ankyrin 100.0 2.9E-41 1E-45 325.8 16.6 206 99-348 34-239 (253)
21 1oy3_D Transcription factor in 100.0 1E-40 3.5E-45 327.1 19.9 253 11-344 2-270 (282)
22 3b7b_A Euchromatic histone-lys 100.0 2.2E-39 7.6E-44 309.3 24.4 229 9-316 2-231 (237)
23 1oy3_D Transcription factor in 100.0 1.3E-40 4.3E-45 326.4 14.7 261 50-397 6-271 (282)
24 1s70_B 130 kDa myosin-binding 100.0 9.7E-41 3.3E-45 330.4 13.4 264 24-341 4-274 (299)
25 3b7b_A Euchromatic histone-lys 100.0 3.3E-39 1.1E-43 308.1 22.3 215 50-345 8-223 (237)
26 1k1a_A B-cell lymphoma 3-encod 100.0 1.9E-39 6.4E-44 310.5 20.6 221 50-348 6-232 (241)
27 4b93_B Ankyrin repeat domain-c 100.0 4.6E-40 1.6E-44 319.6 14.3 231 12-320 5-244 (269)
28 3eu9_A Huntingtin-interacting 100.0 2.6E-38 8.9E-43 302.0 23.7 231 50-322 6-237 (240)
29 4b93_B Ankyrin repeat domain-c 100.0 1.3E-39 4.3E-44 316.5 14.1 214 50-344 8-230 (269)
30 2dzn_A Probable 26S proteasome 100.0 3.1E-38 1.1E-42 299.4 23.0 218 18-316 2-226 (228)
31 3kea_A K1L; tropism, ANK repea 100.0 1.3E-38 4.3E-43 312.8 19.8 240 26-322 7-248 (285)
32 3aji_A 26S proteasome non-ATPa 100.0 1.4E-38 4.9E-43 302.4 18.8 216 50-345 3-218 (231)
33 2dzn_A Probable 26S proteasome 100.0 5.4E-38 1.8E-42 297.7 21.9 211 53-342 2-218 (228)
34 2f8y_A Notch homolog 1, transl 100.0 1.9E-37 6.4E-42 293.0 19.2 217 29-322 2-218 (223)
35 1sw6_A Regulatory protein SWI6 100.0 7.1E-39 2.4E-43 320.9 8.1 281 18-343 23-327 (327)
36 1s70_B 130 kDa myosin-binding 100.0 1.5E-37 5E-42 307.6 16.6 269 59-401 4-282 (299)
37 3eu9_A Huntingtin-interacting 100.0 1.9E-36 6.6E-41 289.0 23.6 231 11-286 2-235 (240)
38 3kea_A K1L; tropism, ANK repea 100.0 7.9E-37 2.7E-41 300.0 18.6 224 9-287 22-247 (285)
39 1sw6_A Regulatory protein SWI6 100.0 4E-37 1.4E-41 308.2 11.1 246 3-306 37-327 (327)
40 2rfa_A Transient receptor pote 100.0 3.6E-35 1.2E-39 279.1 21.3 197 52-322 2-224 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-36 6.2E-41 289.0 9.3 136 14-152 4-147 (236)
42 2rfa_A Transient receptor pote 100.0 6E-35 2.1E-39 277.6 19.3 192 17-219 2-220 (232)
43 2f8y_A Notch homolog 1, transl 100.0 1.9E-34 6.6E-39 272.3 22.6 204 5-220 11-215 (223)
44 1ikn_D Protein (I-kappa-B-alph 100.0 6.1E-36 2.1E-40 285.3 10.7 217 50-343 5-230 (236)
45 3hra_A Ankyrin repeat family p 100.0 6E-34 2.1E-38 264.3 21.3 198 51-318 3-201 (201)
46 3hra_A Ankyrin repeat family p 100.0 1E-33 3.6E-38 262.7 20.4 191 15-217 2-199 (201)
47 2etb_A Transient receptor pote 100.0 1.2E-34 4.2E-39 279.8 14.0 197 53-322 2-248 (256)
48 2pnn_A Transient receptor pote 100.0 2.1E-34 7.2E-39 281.1 14.9 170 8-200 3-195 (273)
49 4gpm_A Engineered protein OR26 100.0 2.1E-33 7.1E-38 252.1 18.5 158 20-182 6-163 (169)
50 2pnn_A Transient receptor pote 100.0 1.2E-33 4.2E-38 275.6 13.9 228 50-337 10-272 (273)
51 2etb_A Transient receptor pote 100.0 9.8E-34 3.4E-38 273.5 12.1 192 17-219 1-244 (256)
52 4gpm_A Engineered protein OR26 100.0 7.3E-32 2.5E-36 242.0 17.8 157 55-222 6-162 (169)
53 3v30_A DNA-binding protein rfx 100.0 5.9E-32 2E-36 244.3 16.4 170 18-192 2-171 (172)
54 3jxi_A Vanilloid receptor-rela 100.0 1.9E-32 6.6E-37 265.0 14.0 140 119-322 90-252 (260)
55 3jxi_A Vanilloid receptor-rela 100.0 1.5E-32 5.2E-37 265.8 12.2 196 15-220 2-249 (260)
56 2rfm_A Putative ankyrin repeat 100.0 3.1E-31 1.1E-35 244.2 15.9 164 10-178 27-190 (192)
57 2aja_A Ankyrin repeat family p 100.0 8.3E-33 2.8E-37 279.7 3.7 275 18-347 65-364 (376)
58 3v31_A Ankyrin repeat family A 100.0 1E-30 3.4E-35 235.0 16.9 161 17-182 2-162 (167)
59 3twr_A Tankyrase-2; ankyrin re 100.0 9.1E-31 3.1E-35 234.8 13.0 161 14-179 4-164 (165)
60 3f6q_A Integrin-linked protein 100.0 1.8E-30 6E-35 236.3 14.8 168 16-188 3-170 (179)
61 2aja_A Ankyrin repeat family p 100.0 1.1E-32 3.6E-37 278.9 -0.9 270 13-317 87-371 (376)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.8E-30 1.3E-34 230.0 15.8 159 16-180 3-162 (162)
63 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.5E-30 2.2E-34 230.2 17.5 160 14-178 10-169 (169)
64 4hbd_A KN motif and ankyrin re 100.0 1.4E-30 4.7E-35 254.2 13.4 188 18-217 76-271 (276)
65 2vge_A RELA-associated inhibit 100.0 5.1E-32 1.7E-36 256.4 1.0 204 6-223 6-216 (229)
66 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.3E-29 4.4E-34 225.0 16.2 154 18-177 2-155 (156)
67 2rfm_A Putative ankyrin repeat 100.0 1.4E-29 4.7E-34 233.2 15.7 161 45-217 28-188 (192)
68 4hbd_A KN motif and ankyrin re 100.0 1E-29 3.6E-34 247.9 15.7 165 10-178 103-273 (276)
69 3v30_A DNA-binding protein rfx 100.0 1.6E-29 5.4E-34 228.4 15.8 95 53-150 2-97 (172)
70 2vge_A RELA-associated inhibit 100.0 1.8E-32 6E-37 259.6 -4.0 161 35-199 2-166 (229)
71 1awc_B Protein (GA binding pro 100.0 2.7E-29 9.1E-34 222.2 16.6 151 18-174 2-152 (153)
72 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.2E-29 1.1E-33 223.9 14.4 158 51-219 3-160 (162)
73 3v31_A Ankyrin repeat family A 100.0 3.8E-29 1.3E-33 224.7 14.8 156 52-218 2-157 (167)
74 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.5E-28 5.2E-33 221.3 16.7 157 50-217 11-167 (169)
75 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.5E-29 5E-34 241.5 8.3 117 261-393 103-227 (239)
76 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.3E-29 4.5E-34 241.9 7.5 181 15-201 2-193 (239)
77 1awc_B Protein (GA binding pro 100.0 2.9E-28 9.8E-33 215.6 15.4 144 53-201 2-145 (153)
78 3twr_A Tankyrase-2; ankyrin re 100.0 2.6E-28 8.7E-33 218.8 12.5 158 50-218 5-162 (165)
79 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.9E-28 2.4E-32 213.8 15.0 153 53-217 2-154 (156)
80 3f6q_A Integrin-linked protein 100.0 6E-28 2E-32 219.5 13.5 147 51-200 3-149 (179)
81 1d9s_A Cyclin-dependent kinase 99.9 1.8E-27 6.1E-32 205.9 11.9 134 8-147 2-136 (136)
82 3t8k_A Uncharacterized protein 99.9 7.2E-28 2.5E-32 219.7 7.2 159 17-181 5-180 (186)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 3.3E-27 1.1E-31 209.5 11.1 145 11-161 5-150 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 3.9E-27 1.3E-31 203.8 11.2 133 43-180 3-136 (136)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 6.5E-27 2.2E-31 207.5 9.9 142 50-196 9-151 (156)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 1.8E-25 6E-30 193.3 12.8 126 50-178 11-136 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.8E-25 1.3E-29 188.1 14.4 125 18-147 2-126 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.9E-25 2E-29 186.9 14.8 126 52-180 1-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 3.9E-25 1.3E-29 191.2 13.2 128 13-145 9-136 (136)
90 3t8k_A Uncharacterized protein 99.9 1.2E-25 4E-30 205.1 10.0 143 53-201 6-166 (186)
91 3c5r_A BARD-1, BRCA1-associate 99.9 3.5E-25 1.2E-29 191.7 7.8 127 13-144 5-131 (137)
92 3deo_A Signal recognition part 99.9 1.1E-24 3.9E-29 198.5 10.9 140 15-177 41-181 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.9 3.9E-25 1.3E-29 191.4 7.1 127 50-179 7-133 (137)
94 3ui2_A Signal recognition part 99.9 7.4E-26 2.5E-30 216.4 2.4 140 52-199 14-154 (244)
95 3deo_A Signal recognition part 99.9 1.5E-25 5.1E-30 204.4 3.8 113 85-200 41-154 (183)
96 3ui2_A Signal recognition part 99.9 1.6E-24 5.4E-29 207.2 10.0 143 15-180 42-185 (244)
97 3aaa_C Myotrophin, protein V-1 99.9 4.4E-24 1.5E-28 181.1 9.6 112 50-164 4-115 (123)
98 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-23 4.8E-28 206.6 13.0 139 53-201 151-298 (301)
99 3ehr_A Osteoclast-stimulating 99.9 3.5E-24 1.2E-28 201.8 6.8 129 50-181 70-199 (222)
100 3ehr_A Osteoclast-stimulating 99.9 5.5E-24 1.9E-28 200.4 8.0 140 12-155 67-206 (222)
101 2b0o_E UPLC1; arfgap, structur 99.9 1E-23 3.5E-28 207.6 10.1 143 16-168 149-299 (301)
102 3aaa_C Myotrophin, protein V-1 99.9 2.2E-23 7.4E-28 176.8 9.7 118 14-136 3-120 (123)
103 1dcq_A PYK2-associated protein 99.9 2.4E-21 8.3E-26 188.4 17.4 165 14-181 62-264 (278)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 7.6E-22 2.6E-26 158.2 11.4 93 52-147 1-93 (93)
105 3jue_A Arfgap with coiled-coil 99.9 1.9E-21 6.5E-26 195.7 13.0 145 51-198 197-346 (368)
106 3jue_A Arfgap with coiled-coil 99.9 1.8E-21 6.1E-26 196.0 12.6 148 12-164 193-346 (368)
107 3lvq_E ARF-GAP with SH3 domain 99.9 2.9E-21 9.9E-26 204.1 14.0 137 53-199 132-277 (497)
108 1dcq_A PYK2-associated protein 99.8 2.2E-21 7.5E-26 188.7 11.7 127 18-148 130-264 (278)
109 3lvq_E ARF-GAP with SH3 domain 99.8 3.9E-21 1.3E-25 203.1 13.0 137 18-164 132-276 (497)
110 2l6b_A NR1C; ankyrin, consensu 99.8 1.6E-21 5.3E-26 163.1 7.4 106 50-158 6-111 (115)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.3E-20 4.4E-25 150.9 11.1 93 87-180 1-93 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.5E-20 8.5E-25 155.7 8.5 109 83-193 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.3E-18 7.7E-23 142.5 9.8 89 50-141 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.3E-17 4.3E-22 138.0 9.9 95 79-174 15-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 70.6 17 0.00057 35.3 9.3 185 15-201 34-229 (351)
116 3gvo_A Pumilio 2, pumilio homo 50.2 45 0.0015 32.2 8.2 292 18-346 3-310 (351)
117 3k49_A MRNA-binding protein PU 43.5 45 0.0015 32.5 7.0 189 14-202 38-235 (369)
118 3k49_A MRNA-binding protein PU 38.5 1.6E+02 0.0053 28.5 10.1 149 50-200 39-197 (369)
119 4g26_A Pentatricopeptide repea 26.0 67 0.0023 32.8 5.1 146 21-177 32-200 (501)
120 3rko_J NADH-quinone oxidoreduc 26.0 1.6E+02 0.0054 25.4 6.6 23 495-517 52-74 (184)
121 1gp8_A Protein (scaffolding pr 21.8 62 0.0021 19.7 2.2 17 21-37 16-32 (40)
122 2iub_A CORA, divalent cation t 20.6 64 0.0022 31.3 3.5 21 497-517 305-325 (363)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.7e-56 Score=462.50 Aligned_cols=371 Identities=18% Similarity=0.177 Sum_probs=280.1
Q ss_pred ccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc
Q 008328 7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK 86 (570)
Q Consensus 7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~ 86 (570)
.|.+++..|.+|+||||+||..|+.++|++|++. +.+++.+ |..|+||||+|++.|+.+++++|++ .|++++.+|.
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~ 78 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAK 78 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCT
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCCC
Confidence 5778888999999999999999999999999876 5566666 7889999999999999999999999 7899999999
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328 87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG 166 (570)
Q Consensus 87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 166 (570)
+|+||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++.+..+..|.||||+|+..|
T Consensus 79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g 157 (437)
T 1n11_A 79 DDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 157 (437)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcC
Confidence 99999999999999999999999999887 68889999999999999999999999999998888889999999999999
Q ss_pred cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccc--hhccchhhhHHHHHHHHHHHHH
Q 008328 167 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGM--RAILDPKLMHLQALELVKRLWE 244 (570)
Q Consensus 167 ~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lh~~~~~~~~~l~~ 244 (570)
+.+++++|+++++++ +..+.+|.||||+|+..+ +.++++.|+..+.+. .+..+.+|+|.++......+++
T Consensus 158 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~-------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 158 KVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHN-------NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp CHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTT-------CHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcC-------CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999998887 578888999999999887 477888888665443 4456778888877433333222
Q ss_pred HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhh
Q 008328 245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLI 324 (570)
Q Consensus 245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~ 324 (570)
. +...+.+++..+..|.||||+|+..|+.+++++|++++++ .+..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus 230 ~-Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~- 306 (437)
T 1n11_A 230 S-LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA- 306 (437)
T ss_dssp H-HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-
T ss_pred H-HHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC-
Confidence 2 2234667777777778888888888888888888877777 456677778888888888888888888877777763
Q ss_pred hhhcccCCCcHHHHhhhhCCCCcc--ccCCchhhhhh-----------HhhhhHHHhhhhcCc-hhhhhhccCCCCcchh
Q 008328 325 ASYKDENNNNMLHLAGKLAPPDRL--KIDSGAALQLR-----------RELHWFKEIEKVVQP-SYREAKNSEGRTPHIL 390 (570)
Q Consensus 325 ~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~~~~-----------~~l~~~~~~~~~~~~-~~~~~~n~~G~Tpl~~ 390 (570)
+|..|+||||+|+..|+.+.+ ++..|++++.+ ......+.++.++.. .+.+.+|.+|+||+++
T Consensus 307 ---~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~ 383 (437)
T 1n11_A 307 ---TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383 (437)
T ss_dssp ---CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred ---CCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence 777788888888777776633 23334433221 122223445555543 5668888899999998
Q ss_pred hhhhhh
Q 008328 391 FSEEHR 396 (570)
Q Consensus 391 a~~~~~ 396 (570)
|.+...
T Consensus 384 A~~~g~ 389 (437)
T 1n11_A 384 AKRLGY 389 (437)
T ss_dssp HHHTTC
T ss_pred HHHcCc
Confidence 877653
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-55 Score=459.86 Aligned_cols=332 Identities=20% Similarity=0.193 Sum_probs=271.4
Q ss_pred cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328 6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN 85 (570)
Q Consensus 6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d 85 (570)
..|.++|..|..|.||||+||..|+.+++++|++. +.+++.+ |.+|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus 35 ~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~ 110 (437)
T 1n11_A 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLE--NNANPNLAT 110 (437)
T ss_dssp HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCC
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHh--CCCCCCCCC
Confidence 45778888888888999999999999988888876 4556666 7888899999999999999998888 788888888
Q ss_pred cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHh
Q 008328 86 KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDA 165 (570)
Q Consensus 86 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 165 (570)
..|.||||+|+..|+.+++++|++++++.. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus 111 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 189 (437)
T 1n11_A 111 TAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189 (437)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence 888899999998899899988888888876 5778888899999988888899999888888888888888899999988
Q ss_pred CcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCcc--chhccchhhhHHHHHHHHHHHH
Q 008328 166 GLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPG--MRAILDPKLMHLQALELVKRLW 243 (570)
Q Consensus 166 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lh~~~~~~~~~l~ 243 (570)
|+.+++++|++++++. +..+.+|.||||+|+..+ +.++++.|+..+.+ ..+..+.||+|.++......++
T Consensus 190 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~-------~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 261 (437)
T 1n11_A 190 NNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN-------QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261 (437)
T ss_dssp TCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTT-------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 8889998888888876 577888889999888887 47888888876554 3456788888888855444444
Q ss_pred HHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328 244 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 323 (570)
Q Consensus 244 ~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~ 323 (570)
+. +...+.+++..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++.
T Consensus 262 ~~-Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 262 AL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339 (437)
T ss_dssp HH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC
T ss_pred HH-HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCC
Confidence 32 3445788888888888999999988888999999888888 567788888999999988888899988888888874
Q ss_pred hhhhcccCCCcHHHHhhhhCCCCcc--ccCCchhh
Q 008328 324 IASYKDENNNNMLHLAGKLAPPDRL--KIDSGAAL 356 (570)
Q Consensus 324 ~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~ 356 (570)
+|..|+||||+|++.|+.+.+ ++..|+++
T Consensus 340 ----~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 340 ----KTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370 (437)
T ss_dssp ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred ----CCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence 888889999999888877633 33344443
No 3
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.7e-46 Score=375.78 Aligned_cols=289 Identities=17% Similarity=0.108 Sum_probs=251.8
Q ss_pred ccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc
Q 008328 7 LKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK 86 (570)
Q Consensus 7 ~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~ 86 (570)
.+.+.+..+..|.|+||.||+.|+.+.++.++...+.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|.
T Consensus 13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~ 89 (351)
T 3utm_A 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDK 89 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCT
T ss_pred CceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCC
Confidence 344555667789999999999999999999999877878777 8999999999999999999999999 8999999999
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH---
Q 008328 87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI--- 163 (570)
Q Consensus 87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--- 163 (570)
.|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.+|++.|+
T Consensus 90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 90 GGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh
Confidence 99999999999999999999999999988 68999999999999999999999999999999999999998877654
Q ss_pred ------------------HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhc
Q 008328 164 ------------------DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAI 225 (570)
Q Consensus 164 ------------------~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (570)
..++.+.++.++...... ...+..|.||||+|+..++.. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~----~----------------- 226 (351)
T 3utm_A 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPK----R----------------- 226 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTT----H-----------------
T ss_pred hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCcc----H-----------------
Confidence 455555666666555443 356778889999998875310 1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHh
Q 008328 226 LDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVH 305 (570)
Q Consensus 226 ~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 305 (570)
.+.++. +...+.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+
T Consensus 227 ----------~~~~~~-----Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 227 ----------KQVAEL-----LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALA 290 (351)
T ss_dssp ----------HHHHHH-----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred ----------HHHHHH-----HHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 123333 3345889999999999999999999999999999999999 677899999999999999
Q ss_pred CchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhh
Q 008328 306 RQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGK 341 (570)
Q Consensus 306 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~ 341 (570)
|+.+++++|+++|++++. +|..|+||+|+|..
T Consensus 291 ~~~~~v~~Ll~~gad~~~----~~~~g~tal~~a~~ 322 (351)
T 3utm_A 291 GHLQTCRLLLSYGSDPSI----ISLQGFTAAQMGNE 322 (351)
T ss_dssp TCHHHHHHHHHTTCCTTC----CCTTSCCHHHHSCH
T ss_pred CcHHHHHHHHHcCCCCCC----cCCCCCChhhhhhH
Confidence 999999999999999985 99999999999943
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-45 Score=359.83 Aligned_cols=267 Identities=21% Similarity=0.234 Sum_probs=240.7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328 16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 95 (570)
Q Consensus 16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 95 (570)
.+|.||||.|++.|+.+++++|++.+ .+++...+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHH
Confidence 46899999999999999999999864 45665557889999999999999999999999 8999999999999999999
Q ss_pred HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCcccc----------ccchhhHHHHHHHh
Q 008328 96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDA 165 (570)
Q Consensus 96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~ 165 (570)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+..
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 99999999999999999987 68999999999999999999999999999999887 77899999999999
Q ss_pred CcHHHHHHHHhh-CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328 166 GLYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 244 (570)
Q Consensus 166 ~~~~~~~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~ 244 (570)
|+.+++++|++. +.++ +.+|..|+||||+|+..++... ..+.++.
T Consensus 159 ~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~------------------------------~~~i~~~--- 204 (285)
T 1wdy_A 159 GHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD------------------------------VEAITHL--- 204 (285)
T ss_dssp TCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTT------------------------------HHHHHHH---
T ss_pred CCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccch------------------------------HHHHHHH---
Confidence 999999999998 7776 6899999999999999875210 0122333
Q ss_pred HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHH-hCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328 245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQ-MYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 323 (570)
Q Consensus 245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~ 323 (570)
+...+.+++.+|..|.||||+|+..|+.+++++|++ .|++ .+.+|..|+||||+|+..++.+++++|+++|++++.
T Consensus 205 --Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 205 --LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp --HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred --HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 334588999999999999999999999999999999 7888 678899999999999999999999999999999884
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.7e-45 Score=367.37 Aligned_cols=292 Identities=20% Similarity=0.220 Sum_probs=222.7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328 16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 95 (570)
Q Consensus 16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 95 (570)
.+|.||||.||+.|+.++|+.||+. +.+++.+.+..|+||||+||..|+.++|++|++ +|++++.+|..+.+|++.+
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILA 99 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCchhHHH
Confidence 3478999999999999999999986 577887744569999999999999999999999 8999999999999999999
Q ss_pred HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCcccc----------ccchhhHHHHHHHh
Q 008328 96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLK----------EEDRIELLVAVIDA 165 (570)
Q Consensus 96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~t~L~~A~~~ 165 (570)
+..+..++++.+++++++++ ..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 99999999999999999988 69999999999999999999999999999988754 44689999999999
Q ss_pred CcHHHHHHHHhh-CcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328 166 GLYDVALDLIQH-HPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 244 (570)
Q Consensus 166 ~~~~~~~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~ 244 (570)
|+.+++++|+++ |+++ +.+|..|.||+|.++..+.. +....+++.|+
T Consensus 179 g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~---~~~~~i~~lLl---------------------------- 226 (337)
T 4g8k_A 179 GHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDD---SDVEAITHLLL---------------------------- 226 (337)
T ss_dssp TCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCT---TTHHHHHHHHH----------------------------
T ss_pred CCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCc---ccHHHHHHHHH----------------------------
Confidence 999999999975 7776 68999999999988765431 01122333333
Q ss_pred HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHh-CCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh
Q 008328 245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM-YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL 323 (570)
Q Consensus 245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~ 323 (570)
..|++++.+|..|.||||+|+..|+.++++.|++. +++ ++.+|.+|+||||+|+++|+.++|++|+++|+++|.
T Consensus 227 ----~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~ 301 (337)
T 4g8k_A 227 ----DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 301 (337)
T ss_dssp ----HTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred ----HCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 33555555555666666666666666666666553 344 445556666666666666666666666666655442
Q ss_pred hhhhcccCCCcHHHHhhhhCCCC--ccccCCchhhh
Q 008328 324 IASYKDENNNNMLHLAGKLAPPD--RLKIDSGAALQ 357 (570)
Q Consensus 324 ~~n~~d~~G~TpLh~A~~~~~~~--~~~~~~ga~~~ 357 (570)
.||||+|++.++.+ ++++..||+++
T Consensus 302 ---------~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 302 ---------GDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp ---------CCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred ---------CCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 23666666655554 23344555444
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.8e-45 Score=368.88 Aligned_cols=307 Identities=15% Similarity=0.096 Sum_probs=255.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
+..|.|+||.|++.|+.+.++.|+.. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 98 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence 67789999999999999999999985 689999999999999999999999999999999999987 6899999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||+|+++..+. .
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~-------~ 170 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPEL-------R 170 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHH-------H
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhh-------H
Confidence 9999999999999999999999999999999999999999999999999998 5899999999999986542 2
Q ss_pred hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHc---CcHHHHHHHHHhCCc
Q 008328 210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVEL---GNVEFLMVLIQMYPN 286 (570)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~ 286 (570)
+.++... ...++..++.......+...+... ......+..|.||||+|+.. ++.+++++|++.|++
T Consensus 171 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~ 239 (351)
T 3utm_A 171 ERLTYEF----------KGHSLLQAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239 (351)
T ss_dssp HHHHHHH----------HHHHHHHHHHTTCHHHHHHHTTTC-CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC
T ss_pred HHHHhhh----------cccHHHHHHHhccHHHHHHHHHhh-cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC
Confidence 2222221 122333333332223333333322 23334567799999999999 678999999999999
Q ss_pred ccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchhhhhhHhhhhHH
Q 008328 287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFK 366 (570)
Q Consensus 287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~ 366 (570)
++.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+|++.++.+.+
T Consensus 240 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~----~d~~g~t~L~~A~~~~~~~~v------------------ 296 (351)
T 3utm_A 240 -VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA----LDSLGQTALHRAALAGHLQTC------------------ 296 (351)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHHHTCHHHH------------------
T ss_pred -cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHHcCcHHHH------------------
Confidence 677899999999999999999999999999999985 999999999999999986532
Q ss_pred HhhhhcCc-hhhhhhccCCCCcchhhhhhhhhhhhhh
Q 008328 367 EIEKVVQP-SYREAKNSEGRTPHILFSEEHRRLVREG 402 (570)
Q Consensus 367 ~~~~~~~~-~~~~~~n~~G~Tpl~~a~~~~~~~~~~~ 402 (570)
+.++.. .+.+.+|.+|+||+++|.+...+.+.+.
T Consensus 297 --~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~l~~~ 331 (351)
T 3utm_A 297 --RLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSES 331 (351)
T ss_dssp --HHHHHTTCCTTCCCTTSCCHHHHSCHHHHHHHHHC
T ss_pred --HHHHHcCCCCCCcCCCCCChhhhhhHHHHHHHHhc
Confidence 222221 3558899999999999987766665544
No 7
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-43 Score=357.99 Aligned_cols=279 Identities=16% Similarity=0.150 Sum_probs=239.7
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCccccccccc-CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNK-VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCM 128 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~ 128 (570)
+.+|+||||.|++.|+.++|++||+ .|+++|.+|. .|.||||+|+..|+.++|++|+++|++++ .++..+.+|++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~--~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhccCCCchhHH
Confidence 3458899999999999999999999 8999998876 49999999999999999999999999988 699999999999
Q ss_pred HHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccc---------cccCCCCCcHHHHHHcC
Q 008328 129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA---------MARDGNGETALHVLARK 199 (570)
Q Consensus 129 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~ 199 (570)
++..++.+++..+++.+++++..|..|.||+|+|+..|+.+++++|+++|+++. ...+..|.||||+|++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999998752 23456799999999998
Q ss_pred CCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCc----HH
Q 008328 200 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VE 275 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~----~~ 275 (570)
|+ .++ ++.+++ ..+++++..|..|.||+|.++..++ .+
T Consensus 179 g~-------~~~---------------------------v~~LL~----~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~ 220 (337)
T 4g8k_A 179 GH-------VEV---------------------------LKILLD----EMGADVNACDNMGRNALIHALLSSDDSDVEA 220 (337)
T ss_dssp TC-------HHH---------------------------HHHHHH----HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHH
T ss_pred CC-------HHH---------------------------HHHHHh----ccCCCcCccCCCCCcHHHHHHHHcCcccHHH
Confidence 85 333 333322 3488999999999999998886543 46
Q ss_pred HHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh-CchhhhhhhhcccCCCcHHHHhhhhCCCC--ccccCC
Q 008328 276 FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHKDLIASYKDENNNNMLHLAGKLAPPD--RLKIDS 352 (570)
Q Consensus 276 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~n~~d~~G~TpLh~A~~~~~~~--~~~~~~ 352 (570)
++++|+++|++ ++.+|..|+||||+|+..|+.++++.|++. |++++ .+|.+|+||||+|++.|+.+ ++++..
T Consensus 221 i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn----~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 221 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp HHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT----CBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc----CcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 88999999999 677899999999999999999999999985 78887 49999999999999999987 456677
Q ss_pred chhhhhhHhhhh------HHHhhhhcCc
Q 008328 353 GAALQLRRELHW------FKEIEKVVQP 374 (570)
Q Consensus 353 ga~~~~~~~l~~------~~~~~~~~~~ 374 (570)
|++++.+..+.+ .+.++.++..
T Consensus 296 GAd~n~~~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 296 GASTDCGDLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp SCSSTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 887766554433 3455655543
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=345.54 Aligned_cols=258 Identities=14% Similarity=0.111 Sum_probs=180.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCcc----------chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccccc
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNLNPE----------AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALR 84 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~----------~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 84 (570)
...|.|+||+|+..|+.+.+..++...+. ..+.+ |.+|+||||+|+..|+.+++++|++ .|++++.+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~ 88 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNII 88 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHH--TTCCSCEE
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCc
Confidence 45689999999999998887776554321 23333 8899999999999999999999999 89999999
Q ss_pred ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHH
Q 008328 85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID 164 (570)
Q Consensus 85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 164 (570)
|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+.
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~ 166 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAAR 166 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHH
Confidence 9999999999999999999999999999987 689999999999999999999999999999988654 49999999999
Q ss_pred hCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHH
Q 008328 165 AGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWE 244 (570)
Q Consensus 165 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~ 244 (570)
.|+.+++++|++.++++ +.+|.+|+||||+|+..++ .++ ++.+++
T Consensus 167 ~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~-------~~~---------------------------v~~Ll~ 211 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQ-------RAC---------------------------VKKLLE 211 (285)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTC-------HHH---------------------------HHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc-------HHH---------------------------HHHHHH
Confidence 99999999999998887 5777777777777777664 222 222222
Q ss_pred HHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh-Cchh
Q 008328 245 QVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL-GAHK 321 (570)
Q Consensus 245 ~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~ 321 (570)
.+.+++. +..|.||||+|+..|+.+++++|+++|++ .+.+|.+|+||||+|+ ++.+++++|+++ |+++
T Consensus 212 -----~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 212 -----SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp -----TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred -----CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 2445543 55666777777777777777777777666 4556667777777766 345666666666 5544
No 9
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.1e-43 Score=343.70 Aligned_cols=250 Identities=17% Similarity=0.154 Sum_probs=227.9
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHccCccccccc-ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALR-NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
.+|+||||.|++.|+.+++++|++ .|.+++.+ +..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence 358899999999999999999999 89999988 8889999999999999999999999999987 6899999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccccccc----------CCCCCcHHHHHHcC
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMAR----------DGNGETALHVLARK 199 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~ 199 (570)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++++++. .. +..|.||||+|+..
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN-LRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc-cccccHHHHHhhccCCCcHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999998873 44 78899999999998
Q ss_pred CCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCc----HH
Q 008328 200 PSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGN----VE 275 (570)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~----~~ 275 (570)
++ .++ ++.++ ...+.+++..|..|.||||.|+..++ .+
T Consensus 159 ~~-------~~~---------------------------v~~Ll----~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 200 (285)
T 1wdy_A 159 GH-------VEV---------------------------LKILL----DEMGADVNACDNMGRNALIHALLSSDDSDVEA 200 (285)
T ss_dssp TC-------HHH---------------------------HHHHH----HTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHH
T ss_pred CC-------HHH---------------------------HHHHH----HhcCCCCCccCCCCCCHHHHHHHccccchHHH
Confidence 75 333 33322 23378889999999999999999999 99
Q ss_pred HHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH-hCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328 276 FLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE-LGAHKDLIASYKDENNNNMLHLAGKLAPPDR 347 (570)
Q Consensus 276 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 347 (570)
++++|+++|++ .+.+|..|+||||+|+.+|+.+++++|++ .|++++. +|.+|+||||+|++.++.+.
T Consensus 201 i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~----~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 201 ITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----TDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp HHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC----CCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc----cCCCCCcHHHHHHHcCcHHH
Confidence 99999999999 67789999999999999999999999999 8999884 99999999999999988653
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-43 Score=360.50 Aligned_cols=264 Identities=19% Similarity=0.198 Sum_probs=212.9
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHH--------HccCcccccc
Q 008328 12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELV--------NLMTPEDLAL 83 (570)
Q Consensus 12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll--------~~~~~~~~~~ 83 (570)
+..|..|+||||.||..|+ ++++.|+. .+++.+.+..|+||||+|+..|+.+++++|+ + .|++++.
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~--~ga~vn~ 161 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVNA 161 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH--TCCCTTC
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCCCCcC
Confidence 3557889999999999554 67766653 3456662378999999999999988887776 5 7899999
Q ss_pred cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc---CCccccccchhhHHH
Q 008328 84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT---KEEDLKEEDRIELLV 160 (570)
Q Consensus 84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~ 160 (570)
+|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++++ ++++..+..|.||||
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~ 240 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence 99999999999999999999999999999987 68999999999999999999999999988 789999999999999
Q ss_pred HHHHhC---cHHHHHHHHhhCccccc-------ccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhh
Q 008328 161 AVIDAG---LYDVALDLIQHHPQLAM-------ARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKL 230 (570)
Q Consensus 161 ~A~~~~---~~~~~~~Ll~~~~~~~~-------~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 230 (570)
+|+..+ +.+++++|+++|+++.. ..|..|+||||+|+..|+ .+
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-------~~-------------------- 293 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN-------MP-------------------- 293 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-------HH--------------------
T ss_pred HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC-------HH--------------------
Confidence 999988 89999999999988731 256788888888888874 33
Q ss_pred hHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHH
Q 008328 231 MHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKI 310 (570)
Q Consensus 231 lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i 310 (570)
.++.+++. .+.+++..|..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+.+|+.++
T Consensus 294 -------~v~~Ll~~----~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 294 -------IVKYLVGE----KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp -------HHHHHHHH----SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHH
T ss_pred -------HHHHHHHh----cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHH
Confidence 33333322 2477888888888888888888888888888888888 56678888888888888888888
Q ss_pred HHHHHHhCchh
Q 008328 311 FNLIYELGAHK 321 (570)
Q Consensus 311 v~~Ll~~g~~~ 321 (570)
+++|++++++.
T Consensus 362 v~~Ll~~~a~~ 372 (373)
T 2fo1_E 362 VDIFDRCRPER 372 (373)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHhcCccc
Confidence 88888887653
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.7e-42 Score=334.69 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=198.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 96 (570)
Q Consensus 17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 96 (570)
+|+||||+||..|+.+++++|++. +.+++.+ |.+|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TADHVSPLHEACLGGHLSCVKILLK--HGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHH
Confidence 578888888888888888888875 4556666 7788888888888888888888888 78888888888888888888
Q ss_pred HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHh
Q 008328 97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 176 (570)
Q Consensus 97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 176 (570)
..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 8888888888888888875 35568888888888888888888888888888888888888888888888888888888
Q ss_pred hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhh
Q 008328 177 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE 256 (570)
Q Consensus 177 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~ 256 (570)
+|+++. .
T Consensus 156 ~g~~~~-------------------------------------------------------------------------~ 162 (261)
T 2xai_A 156 SGADVN-------------------------------------------------------------------------Q 162 (261)
T ss_dssp HTCCTT-------------------------------------------------------------------------C
T ss_pred cCCCCC-------------------------------------------------------------------------C
Confidence 776652 1
Q ss_pred hccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhh----hhhhcccCC
Q 008328 257 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDL----IASYKDENN 332 (570)
Q Consensus 257 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~----~~n~~d~~G 332 (570)
+..|.||||+|+..|+.+++++|+++|++ .+.+|.+|+||||+|+.++ +++++|++.+....+ ..+.+|..|
T Consensus 163 -~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g 238 (261)
T 2xai_A 163 -GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFG 238 (261)
T ss_dssp -CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSC
T ss_pred -CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhc
Confidence 23466777788888889999999999999 6788999999999999554 699999998764321 123589999
Q ss_pred CcHHHHhhhhCCC
Q 008328 333 NNMLHLAGKLAPP 345 (570)
Q Consensus 333 ~TpLh~A~~~~~~ 345 (570)
+||||.|.+...+
T Consensus 239 ~t~l~~~~~~~~p 251 (261)
T 2xai_A 239 IQQHHKITKLVLP 251 (261)
T ss_dssp TTCGGGGGGSSSC
T ss_pred hhccccCcccCCc
Confidence 9999999987654
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.1e-43 Score=342.41 Aligned_cols=245 Identities=17% Similarity=0.134 Sum_probs=196.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcc---------CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCC
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLM---------TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGN 120 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 120 (570)
...|.|+||+|+..|+.+.+..++... ....++.+|..|+||||+|+..|+.+++++|+++|++++ .+|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence 578999999999999987777765521 123467789999999999999999999999999999987 6999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328 121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200 (570)
Q Consensus 121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 200 (570)
.|.||||+|+..|+.+++++|+++|++++.++.+|.||||+|+..|+.+++++|+++++++. .+.+|.||||+|+..|
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRG 168 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999873 4566999999999988
Q ss_pred CccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHH
Q 008328 201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L 280 (570)
+ .+ .++.++ ..+.+++..|..|.||||+|+..|+.+++++|
T Consensus 169 ~-------~~---------------------------~v~~Ll-----~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L 209 (285)
T 3d9h_A 169 H-------VE---------------------------CVNSLI-----AYGGNIDHKISHLGTPLYLACENQQRACVKKL 209 (285)
T ss_dssp C-------HH---------------------------HHHHHH-----HTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred C-------HH---------------------------HHHHHH-----HCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 5 33 333333 34788899999999999999999999999999
Q ss_pred HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhh
Q 008328 281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKL 342 (570)
Q Consensus 281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 342 (570)
+++|+++. .|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+..
T Consensus 210 l~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 210 LESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADTQA----KNAEGKRPVELVPPE 265 (285)
T ss_dssp HHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTT
T ss_pred HHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHhcCc
Confidence 99999954 389999999999999999999999999999984 999999999999954
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=8.3e-42 Score=329.66 Aligned_cols=232 Identities=21% Similarity=0.233 Sum_probs=160.5
Q ss_pred CcccCCCCCChHHHHHHHcC-------------CHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHcc
Q 008328 10 GVERNCFTSYAPLHLAALKG-------------DWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLM 76 (570)
Q Consensus 10 ~~~~~d~~g~t~Lh~Aa~~g-------------~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~ 76 (570)
|+|.+|.+|+||||+|+..| +.++++.|++.+.. ++...|..|+||||+|+..|+.+++++|++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-- 78 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS-LHNQTDRTGETALHLAARYSRSDAAKRLLE-- 78 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH--
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHH--
Confidence 68899999999999999987 88888888876444 433337888999999999999999999998
Q ss_pred CcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchh
Q 008328 77 TPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI 156 (570)
Q Consensus 77 ~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 156 (570)
.|++++.+|..|.||||+|+..|+.+++++|+++++.....++..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 158 (253)
T 1yyh_A 79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158 (253)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence 78888888888999999999999999999999888733336888899999999999999999999998888888888888
Q ss_pred hHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHH
Q 008328 157 ELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQAL 236 (570)
Q Consensus 157 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~ 236 (570)
||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~-------------------------------------------------- 187 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANK-DMQN-------------------------------------------------- 187 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCT-TCCC--------------------------------------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCcC--------------------------------------------------
Confidence 8888888888888888888877665 2333
Q ss_pred HHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328 237 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 316 (570)
Q Consensus 237 ~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 316 (570)
..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+++|+.+++++|.+
T Consensus 188 ----------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~ 244 (253)
T 1yyh_A 188 ----------------------NREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDL 244 (253)
T ss_dssp ----------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred ----------------------CCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455666666677778888999999888 56778889999999999999999998886
Q ss_pred hC
Q 008328 317 LG 318 (570)
Q Consensus 317 ~g 318 (570)
..
T Consensus 245 ~~ 246 (253)
T 1yyh_A 245 EH 246 (253)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=329.88 Aligned_cols=247 Identities=15% Similarity=0.141 Sum_probs=198.9
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328 52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131 (570)
Q Consensus 52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~ 131 (570)
+|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH
Confidence 58899999999999999999999 788999999999999999999999999999999998887 688899999999999
Q ss_pred cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhh
Q 008328 132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF 211 (570)
Q Consensus 132 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 211 (570)
.|+.+++++|+++|++++. +.+|.||||.|+..|+.+++++|+++|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------ 127 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI------------------------------ 127 (261)
T ss_dssp HTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT------------------------------
T ss_pred cCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------------------------
Confidence 9999999999999888774 344777888888877777777777776654
Q ss_pred hhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccc
Q 008328 212 WRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKV 291 (570)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 291 (570)
+..|..|.||||+|+..|+.+++++|+++|+++. .
T Consensus 128 -------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~- 162 (261)
T 2xai_A 128 -------------------------------------------DHKISHLGTPLYLACENQQRACVKKLLESGADVN-Q- 162 (261)
T ss_dssp -------------------------------------------TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT-C-
T ss_pred -------------------------------------------CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-C-
Confidence 2334456667777777788999999999999954 3
Q ss_pred cCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhhhh
Q 008328 292 DDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKV 371 (570)
Q Consensus 292 d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~~~ 371 (570)
|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+..++...+++..+....+.
T Consensus 163 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~l~------------ 226 (261)
T 2xai_A 163 GKGQDSPLHAVARTASEELACLLMDFGADTQA----KNAEGKRPVELVPPESPLAQLFLEREGPPSLM------------ 226 (261)
T ss_dssp CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCGGGGSCTTCTHHHHHHHC-CCCCHH------------
T ss_pred CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCC----cCCCCCChhhhccccccHHHHHHhccCCccHH------------
Confidence 89999999999999999999999999999985 99999999999997665433333332221110
Q ss_pred cCchhhhhhccCCCCcchhhhhh
Q 008328 372 VQPSYREAKNSEGRTPHILFSEE 394 (570)
Q Consensus 372 ~~~~~~~~~n~~G~Tpl~~a~~~ 394 (570)
+....+.+|..|+||+|++.+.
T Consensus 227 -~~~~~~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 227 -QLCRLRIRKCFGIQQHHKITKL 248 (261)
T ss_dssp -HHHHHHHHTTSCTTCGGGGGGS
T ss_pred -HHHHHHHHHHhchhccccCccc
Confidence 1134478999999999998864
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.9e-42 Score=351.43 Aligned_cols=271 Identities=17% Similarity=0.095 Sum_probs=213.0
Q ss_pred cccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc
Q 008328 6 CLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN 85 (570)
Q Consensus 6 ~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d 85 (570)
..+.+.+..|.+|+||||+||..|+.++|++|++. +.+++.+ |..|+||||+|+..|+.++|++|++ .|++++ +
T Consensus 8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~--~ 81 (364)
T 3ljn_A 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLAS--VGEVHS--L 81 (364)
T ss_dssp --------CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHH--HCCCCC--C
T ss_pred ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHH--CCCCcc--c
Confidence 34567778888899999999999999999988876 5667766 8889999999999999999999999 677544 4
Q ss_pred cCCChHHHHHHHcCcHHHHHHHHhc----CCCCCC----------------cCCCCCCcHHHHHHHcC--CHHHHHHHhh
Q 008328 86 KVGNTALCFAAVSGVTKIAEVMVNK----NRELPS----------------IRGNKGATPLCMAALLG--HKEMIWYLYS 143 (570)
Q Consensus 86 ~~g~TpLh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~~~~g~TpLh~A~~~g--~~~~v~~Ll~ 143 (570)
.+|.||||+|+..|+.+++++|+++ |.+++. .+|..|.||||+|+..| +.+++++|++
T Consensus 82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~ 161 (364)
T 3ljn_A 82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161 (364)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence 5789999999999999999999988 666541 16778999999999999 8999999999
Q ss_pred ccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc-----cccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhc
Q 008328 144 VTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ-----LAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYS 218 (570)
Q Consensus 144 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~ 218 (570)
+|++++..|..|.||||+|+..|+.+++++|++++++ + +..|..|+||||+|+..|+ .++
T Consensus 162 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~-------~~~------- 226 (364)
T 3ljn_A 162 LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINW-------EDV------- 226 (364)
T ss_dssp HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTC-------HHH-------
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCC-------HHH-------
Confidence 9999999999999999999999999999999998887 5 5778888888888888874 232
Q ss_pred CccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccc----------
Q 008328 219 VPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI---------- 288 (570)
Q Consensus 219 ~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~---------- 288 (570)
++.+ +..|++++..|..|.||||+|+..|+.+++++|+++|++..
T Consensus 227 --------------------v~~L-----l~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 281 (364)
T 3ljn_A 227 --------------------AMRF-----VEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT 281 (364)
T ss_dssp --------------------HHHH-----HTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSS
T ss_pred --------------------HHHH-----HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcc
Confidence 3222 23477788888888888888888888888888888876631
Q ss_pred -ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 289 -WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 289 -~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
...+..++||++.|+..++.+.+..|++.+++..
T Consensus 282 ~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316 (364)
T ss_dssp SBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence 1145677888888888887777777777666543
No 16
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-43 Score=355.91 Aligned_cols=258 Identities=15% Similarity=0.175 Sum_probs=218.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcHHHHHHHH--------hcCCCCCCcCCC
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVTKIAEVMV--------NKNRELPSIRGN 120 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~ 120 (570)
|..|+||||+|+..|+ +++++|+. .+++.+| ..|+||||+|+..|+.+++++|+ ++|++++ .+|.
T Consensus 91 ~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~d~ 164 (373)
T 2fo1_E 91 EPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDC 164 (373)
T ss_dssp ---CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCT
T ss_pred CCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CCCC
Confidence 7889999999999665 77777644 5788888 79999999999999998877776 7899988 6899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC---cccccccCCCCCcHHHHHH
Q 008328 121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH---PQLAMARDGNGETALHVLA 197 (570)
Q Consensus 121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~---~~~~~~~d~~g~tpLh~A~ 197 (570)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++ .++ +..|.+|.||||+|+
T Consensus 165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVA 243 (373)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 455 688999999999999
Q ss_pred cCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHH
Q 008328 198 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFL 277 (570)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v 277 (570)
..+.. ...++++.|+..+.++.... ....+..|..|.||||+|+..|+.+++
T Consensus 244 ~~~~~----~~~~~v~~Ll~~g~~~~~~~------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v 295 (373)
T 2fo1_E 244 HNEGR----DQVASAKLLVEKGAKVDYDG------------------------AARKDSEKYKGRTALHYAAQVSNMPIV 295 (373)
T ss_dssp HSCST----THHHHHHHHHHHTCCSSCCS------------------------GGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred HhCCc----chHHHHHHHHHCCCCccccc------------------------ccccCcccccCCCHHHHHHHhCCHHHH
Confidence 87631 13455555554433322110 112334677899999999999999999
Q ss_pred HHHHHhC-CcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328 278 MVLIQMY-PNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR 347 (570)
Q Consensus 278 ~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 347 (570)
++|++++ ++ .+.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+|+..++.+.
T Consensus 296 ~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~----~d~~g~t~l~~A~~~g~~~i 361 (373)
T 2fo1_E 296 KYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNI 361 (373)
T ss_dssp HHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----CCSSSCCHHHHHHHTTCHHH
T ss_pred HHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccC----CCCCCCCHHHHHHHcCCHHH
Confidence 9999987 66 788899999999999999999999999999999985 99999999999999998654
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.1e-41 Score=347.02 Aligned_cols=255 Identities=15% Similarity=0.086 Sum_probs=225.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|.+|+||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++.. +..|.||||+|
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCHHHHH
Confidence 8889999999999999999999999 899999999999999999999999999999999999643 45899999999
Q ss_pred HHcCCHHHHHHHhhc----cCCccc-----------------cccchhhHHHHHHHhC--cHHHHHHHHhhCcccccccC
Q 008328 130 ALLGHKEMIWYLYSV----TKEEDL-----------------KEEDRIELLVAVIDAG--LYDVALDLIQHHPQLAMARD 186 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~----g~~~~~-----------------~~~~g~t~L~~A~~~~--~~~~~~~Ll~~~~~~~~~~d 186 (570)
+..|+.+++++|+++ |++++. .+..|.||||+|+..| +.+++++|+++|+++ +.+|
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d 170 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKD 170 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCC
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccC
Confidence 999999999999999 777777 8889999999999999 999999999999998 6899
Q ss_pred CCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHH
Q 008328 187 GNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLF 266 (570)
Q Consensus 187 ~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh 266 (570)
..|+||||+|+..|+ .++++.| ++......+.+++..|..|.||||
T Consensus 171 ~~g~t~L~~A~~~g~-------~~~v~~L---------------------------l~~g~~~~~~~~~~~~~~g~t~L~ 216 (364)
T 3ljn_A 171 KADETPLMRAMEFRN-------REALDLM---------------------------MDTVPSKSSLRLDYANKQGNSHLH 216 (364)
T ss_dssp TTSCCHHHHHHHTTC-------HHHHHHH---------------------------HHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred CCCCCHHHHHHHcCC-------HHHHHHH---------------------------HhcccccccccccccCCCCCcHHH
Confidence 999999999999985 4444444 333222234448899999999999
Q ss_pred HHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhh--------hhcccCCCcHHHH
Q 008328 267 TAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIA--------SYKDENNNNMLHL 338 (570)
Q Consensus 267 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~--------n~~d~~G~TpLh~ 338 (570)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++++... ...+..|+|||+.
T Consensus 217 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 295 (364)
T 3ljn_A 217 WAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295 (364)
T ss_dssp HHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSC
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchh
Confidence 99999999999999999999 67889999999999999999999999999999876411 0157788999999
Q ss_pred hhhhCCC
Q 008328 339 AGKLAPP 345 (570)
Q Consensus 339 A~~~~~~ 345 (570)
|+..++.
T Consensus 296 aa~~~~~ 302 (364)
T 3ljn_A 296 AAADPSK 302 (364)
T ss_dssp SSCCHHH
T ss_pred hhhccCH
Confidence 8877654
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.8e-40 Score=314.20 Aligned_cols=228 Identities=18% Similarity=0.143 Sum_probs=200.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF 94 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 94 (570)
+..+.||||.||+.|+.+.++++++..+..++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 79 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHI 79 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHH--hCCCCCCcCCCCCCHHHH
Confidence 4568899999999999999999999877766666 8899999999999999999999999 799999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328 95 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 174 (570)
Q Consensus 95 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 174 (570)
|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|
T Consensus 80 A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 999999999999999999987 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccch
Q 008328 175 IQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKI 254 (570)
Q Consensus 175 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~ 254 (570)
+++++++ +.+|.
T Consensus 159 l~~g~~~-~~~~~------------------------------------------------------------------- 170 (231)
T 3aji_A 159 LFYKAST-NIQDT------------------------------------------------------------------- 170 (231)
T ss_dssp HHTTCCS-CCCCT-------------------------------------------------------------------
T ss_pred HhcCCCc-cccCC-------------------------------------------------------------------
Confidence 9887765 33444
Q ss_pred hhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCch
Q 008328 255 GELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAH 320 (570)
Q Consensus 255 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~ 320 (570)
.|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+..++.+++++|.++|++
T Consensus 171 -----~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 171 -----EGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp -----TSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 455666666666778899999999998 567799999999999999999999999988765
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.5e-41 Score=320.19 Aligned_cols=230 Identities=18% Similarity=0.180 Sum_probs=161.3
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHh---cCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328 12 ERNCFTSYAPLHLAALKGDWDFARNFFN---LNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG 88 (570)
Q Consensus 12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g 88 (570)
+.+|.+|+||||+||+.|+.+++++|++ ..+.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCC
Confidence 4567777777777777777777777775 245555555 6777777777777777777777777 677777777777
Q ss_pred ChHHHHHHHcCcHHHHHHHHhcCC----CCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc-cchhhHHHHHH
Q 008328 89 NTALCFAAVSGVTKIAEVMVNKNR----ELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVI 163 (570)
Q Consensus 89 ~TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~ 163 (570)
.||||+|+..|+.+++++|+++++ +++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence 777777777777777777777776 444 466777777777777777777777777777776666 56666666666
Q ss_pred HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHH
Q 008328 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW 243 (570)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~ 243 (570)
..|+.+++++|+++|+++
T Consensus 159 ~~~~~~~v~~Ll~~g~~~-------------------------------------------------------------- 176 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHGANV-------------------------------------------------------------- 176 (241)
T ss_dssp HTTCHHHHHHHHHTTCCT--------------------------------------------------------------
T ss_pred HcCCHHHHHHHHHcCCCC--------------------------------------------------------------
Confidence 666666666666665544
Q ss_pred HHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCc
Q 008328 244 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGA 319 (570)
Q Consensus 244 ~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~ 319 (570)
+..|..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+..|+.++++.|.+.++
T Consensus 177 -----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 177 -----------NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp -----------TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred -----------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 33344566666667777778888888888888 56778888888888888888888888887654
No 20
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.9e-41 Score=325.83 Aligned_cols=206 Identities=17% Similarity=0.148 Sum_probs=151.5
Q ss_pred CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC
Q 008328 99 GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178 (570)
Q Consensus 99 g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 178 (570)
++.+++++|+++|++++...|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++
T Consensus 34 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 113 (253)
T 1yyh_A 34 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113 (253)
T ss_dssp ------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred CChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 36777777777777776556777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhc
Q 008328 179 PQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELL 258 (570)
Q Consensus 179 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d 258 (570)
+...+.+|.+|.||||+|+..++ .++++.| + ..+.+++..|
T Consensus 114 ~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~L---------------------------l-----~~g~~~~~~d 154 (253)
T 1yyh_A 114 ATDLDARMHDGTTPLILAARLAV-------EGMLEDL---------------------------I-----NSHADVNAVD 154 (253)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTC-------SSHHHHH---------------------------H-----HTTCCTTCBC
T ss_pred CCCccccCCCCCcHHHHHHHcCh-------HHHHHHH---------------------------H-----HcCCCCCCcC
Confidence 64446777778888888777664 2222222 2 2366777778
Q ss_pred cCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHH
Q 008328 259 RKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHL 338 (570)
Q Consensus 259 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~ 338 (570)
..|.||||+|+..|+.+++++|+++|++ .+.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+
T Consensus 155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----~d~~g~tpl~~ 229 (253)
T 1yyh_A 155 DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI----TDHMDRLPRDI 229 (253)
T ss_dssp TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----cccCCCCHHHH
Confidence 8899999999999999999999999999 677899999999999999999999999999999985 99999999999
Q ss_pred hhhhCCCCcc
Q 008328 339 AGKLAPPDRL 348 (570)
Q Consensus 339 A~~~~~~~~~ 348 (570)
|++.|+.+.+
T Consensus 230 A~~~g~~~i~ 239 (253)
T 1yyh_A 230 AQERMHHDIV 239 (253)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 9999987643
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1e-40 Score=327.10 Aligned_cols=253 Identities=15% Similarity=0.068 Sum_probs=154.8
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHhcCcc--chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328 11 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPE--AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG 88 (570)
Q Consensus 11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~--~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g 88 (570)
++..|.+|+||||+||+.|+.+++++|++.+.. .++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g 78 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYA--AGAGVLVAERGG 78 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSSCCCTTS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCC
Confidence 356677777777777777777777777765322 24444 6777777777777777777777777 677777777777
Q ss_pred ChHHHHHHHcCcHHHHHHHHhcCCCCCC------------cCCCCCCcHHHHHHHcCCH-HHHHHHhhccCCccccccch
Q 008328 89 NTALCFAAVSGVTKIAEVMVNKNRELPS------------IRGNKGATPLCMAALLGHK-EMIWYLYSVTKEEDLKEEDR 155 (570)
Q Consensus 89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g 155 (570)
.||||+|+..|+.+++++|++++++... .....+.+|++.++..+.. .....+...+.+++..+..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 7777777777777777777777765331 1122334444444433322 22233333444444444444
Q ss_pred hhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHH
Q 008328 156 IELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA 235 (570)
Q Consensus 156 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~ 235 (570)
.||||+|+..|+.+++++|+++|
T Consensus 159 ~t~L~~A~~~g~~~~v~~Ll~~g--------------------------------------------------------- 181 (282)
T 1oy3_D 159 HTPLHVAVIHKDAEMVRLLRDAG--------------------------------------------------------- 181 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHT---------------------------------------------------------
T ss_pred cCHHHHHHHcCCHHHHHHHHHcC---------------------------------------------------------
Confidence 44444444444444444444444
Q ss_pred HHHHHHHHHHHHhcCccchhhhcc-CCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHH
Q 008328 236 LELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLI 314 (570)
Q Consensus 236 ~~~~~~l~~~~l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L 314 (570)
++++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|
T Consensus 182 ----------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~L 244 (282)
T 1oy3_D 182 ----------------ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLL 244 (282)
T ss_dssp ----------------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHH
T ss_pred ----------------CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHH
Confidence 44444443 377888888888999999999999999 677899999999999999999999999
Q ss_pred HHhCchhhhhhhhcccCCCcHHHHhhhhCC
Q 008328 315 YELGAHKDLIASYKDENNNNMLHLAGKLAP 344 (570)
Q Consensus 315 l~~g~~~~~~~n~~d~~G~TpLh~A~~~~~ 344 (570)
+++|++++. +|.+|.|||++|....+
T Consensus 245 l~~ga~~~~----~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 245 RAHGAPEPE----DGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHTTCCCCC----CC---------------
T ss_pred HHcCCCcCc----CCCcccccccccCCccc
Confidence 999999984 99999999999987654
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.2e-39 Score=309.29 Aligned_cols=229 Identities=17% Similarity=0.170 Sum_probs=181.8
Q ss_pred CCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328 9 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG 88 (570)
Q Consensus 9 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g 88 (570)
.+++.+|.+|+||||+||..|+.+++++|++. +.+++.. +..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g 77 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTC-SEDQRTPLMEAAENNHLEAVKYLIK--AGALVDPKDAEG 77 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHT--TTCCCCCCCTTS
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHh--CCCCCCCCCCCC
Confidence 46778888889999999999999988888875 4556665 7888899999999999999999988 788888888888
Q ss_pred ChHHHHHHHcCcHHHHHHHHhcC-CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328 89 NTALCFAAVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL 167 (570)
Q Consensus 89 ~TpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 167 (570)
.||||+|+..|+.+++++|++++ .+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence 99999999999999999999888 4444 688888899999998888899998888888888888888888888888888
Q ss_pred HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHH
Q 008328 168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL 247 (570)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l 247 (570)
.+++++|++.++++ +.+|..
T Consensus 157 ~~~~~~Ll~~g~~~-~~~~~~----------------------------------------------------------- 176 (237)
T 3b7b_A 157 VDIAEILLAAKCDL-HAVNIH----------------------------------------------------------- 176 (237)
T ss_dssp HHHHHHHHTTTCCT-TCCCTT-----------------------------------------------------------
T ss_pred HHHHHHHHHcCCCC-CCcCCC-----------------------------------------------------------
Confidence 88888888777665 344444
Q ss_pred hcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328 248 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 316 (570)
Q Consensus 248 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 316 (570)
|.||||+|+..|+.+++++|+++|++ .+.+|.+|+||||+|+.+++.+.+..+++
T Consensus 177 -------------g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 177 -------------GDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp -------------CCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555555556667777778877777 55667788888888888777765555544
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.3e-40 Score=326.43 Aligned_cols=261 Identities=17% Similarity=0.136 Sum_probs=183.9
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPL 126 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpL 126 (570)
|.+|+||||+|++.|+.+++++|++ .+++ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL 82 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTAL 82 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHH
Confidence 8899999999999999999999999 6776 88999999999999999999999999999999987 6899999999
Q ss_pred HHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccC
Q 008328 127 CMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASG 206 (570)
Q Consensus 127 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 206 (570)
|+|+..|+.+++++|+++|++........ ++.... ......+.++++.++..+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 137 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDT------------------YLTQSQ---DCTPDTSHAPAAVDSQPNPE---- 137 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------------
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHH------------------Hhhccc---ccCcchhcchhhhccccccc----
Confidence 99999999999999999998755432211 111111 12345567777776654421
Q ss_pred CchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCc
Q 008328 207 SQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN 286 (570)
Q Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 286 (570)
......+...+.+++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 138 ----------------------------------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 183 (282)
T 1oy3_D 138 ----------------------------------NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183 (282)
T ss_dssp ----------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ----------------------------------hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1111223344778889999999999999999999999999999999
Q ss_pred ccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc--ccCCchhhhhhHhhhh
Q 008328 287 LIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL--KIDSGAALQLRRELHW 364 (570)
Q Consensus 287 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~--~~~~ga~~~~~~~l~~ 364 (570)
+....+..|+||||+|+.+|+.+++++|+++|++++. +|..|+||||+|++.++.+.+ ++..|
T Consensus 184 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~tpL~~A~~~~~~~~v~~Ll~~g----------- 248 (282)
T 1oy3_D 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA----RMYGGRTPLGSALLRPNPILARLLRAHG----------- 248 (282)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCHHHHHHTSSCHHHHHHHHHTT-----------
T ss_pred CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc----cccCCCCHHHHHHHcCCcHHHHHHHHcC-----------
Confidence 5444334599999999999999999999999999985 999999999999999876532 22233
Q ss_pred HHHhhhhcCchhhhhhccCCCCcchhhhhhhhh
Q 008328 365 FKEIEKVVQPSYREAKNSEGRTPHILFSEEHRR 397 (570)
Q Consensus 365 ~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~~~~~ 397 (570)
++++.+|.+|+||+++|......
T Consensus 249 ----------a~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 249 ----------APEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp ----------CCCCCCC----------------
T ss_pred ----------CCcCcCCCcccccccccCCcccc
Confidence 44588999999999999876543
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.7e-41 Score=330.43 Aligned_cols=264 Identities=16% Similarity=0.120 Sum_probs=217.1
Q ss_pred HHHHcCCHHHHHHHHhcCccch-------hhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328 24 LAALKGDWDFARNFFNLNPEAV-------CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 96 (570)
Q Consensus 24 ~Aa~~g~~~~v~~ll~~~~~~~-------~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 96 (570)
.+++.|+.+.++.++....... ....+..|.||||.||..|+.+++++|++ .|++++.+|.+|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHH
Confidence 5778888888888887543211 11123467899999999999999999999 79999999999999999999
Q ss_pred HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHh
Q 008328 97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 176 (570)
Q Consensus 97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 176 (570)
..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+.+|.||||+|+..++.++++.++.
T Consensus 82 ~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~ 160 (299)
T 1s70_B 82 IDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160 (299)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence 9999999999999999987 689999999999999999999999999999999999999999999999999999998886
Q ss_pred hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhh
Q 008328 177 HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGE 256 (570)
Q Consensus 177 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~ 256 (570)
......+..+..+.++++.. .. ..+.........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~------------------------------------------~~----~~l~~~~~~~~~ 194 (299)
T 1s70_B 161 RQGVDIEAARKEEERIMLRD------------------------------------------AR----QWLNSGHINDVR 194 (299)
T ss_dssp HHTCCHHHHHHHHHHHHHHH------------------------------------------HH----HHHHHTCCCCCC
T ss_pred hcCCCchhhhhhhhhHHHHH------------------------------------------HH----HHHhccCcchhh
Confidence 53322222222222221111 11 122223344445
Q ss_pred hccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHH
Q 008328 257 LLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNML 336 (570)
Q Consensus 257 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpL 336 (570)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++. +|..|+|||
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l 269 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA----VNKVGQTAF 269 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----CCTTSCCTT
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC----cCCCCCCHH
Confidence 667899999999999999999999999999 677899999999999999999999999999999985 999999999
Q ss_pred HHhhh
Q 008328 337 HLAGK 341 (570)
Q Consensus 337 h~A~~ 341 (570)
|+|++
T Consensus 270 ~~A~~ 274 (299)
T 1s70_B 270 DVADE 274 (299)
T ss_dssp TSCCS
T ss_pred HHHHH
Confidence 99965
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.3e-39 Score=308.10 Aligned_cols=215 Identities=19% Similarity=0.188 Sum_probs=172.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|.+|+||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+|
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 84 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLA 84 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHH--cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHH
Confidence 6777777777777777777777777 677777777777777777777777777777777777766 5677777777777
Q ss_pred HHcCCHHHHHHHhhcc-CCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCc
Q 008328 130 ALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQ 208 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 208 (570)
+..|+.+++++|+++| .+++..+..|.||||.|+..++.+++++|+++|+++
T Consensus 85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--------------------------- 137 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI--------------------------- 137 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---------------------------
T ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---------------------------
Confidence 7777777777777777 667777777777777777777777777777666544
Q ss_pred hhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCccc
Q 008328 209 LGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLI 288 (570)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 288 (570)
+..|..|.||||+|+..|+.+++++|+++|++ .
T Consensus 138 ----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~ 170 (237)
T 3b7b_A 138 ----------------------------------------------NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-L 170 (237)
T ss_dssp ----------------------------------------------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-T
T ss_pred ----------------------------------------------CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-C
Confidence 33344566777778888889999999999999 6
Q ss_pred ccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCC
Q 008328 289 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP 345 (570)
Q Consensus 289 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~ 345 (570)
+.+|..|+||||+|+..++.+++++|+++|++++. +|.+|+||||+|+..++.
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL----KNKEGETPLQCASLNSQV 223 (237)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----CCTTSCCHHHHSCTTCHH
T ss_pred CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----cCCCCCCHHHHHHHHHHH
Confidence 67799999999999999999999999999999985 999999999999998753
No 26
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.9e-39 Score=310.48 Aligned_cols=221 Identities=20% Similarity=0.226 Sum_probs=192.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHc--cCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNL--MTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC 127 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~--~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh 127 (570)
|.+|+||||+|++.|+.+++++|++. ..+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~ 84 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAH 84 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence 88999999999999999999999862 1578999999999999999999999999999999999987 68899999999
Q ss_pred HHHHcCCHHHHHHHhhccC----CccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCcc
Q 008328 128 MAALLGHKEMIWYLYSVTK----EEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAF 203 (570)
Q Consensus 128 ~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~ 203 (570)
+|+..|+.+++++|+++++ +++..+..|.||||.|+..|+.+++++|++.++++. ..+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~----------------- 146 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVD----------------- 146 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCC-----------------
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccc-----------------
Confidence 9999999999999999987 778888888888888888888888888888876652 222
Q ss_pred ccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHh
Q 008328 204 ASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQM 283 (570)
Q Consensus 204 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 283 (570)
+..|.||||+|+..|+.+++++|+++
T Consensus 147 ------------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 147 ------------------------------------------------------IKSGRSPLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp ------------------------------------------------------TTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ------------------------------------------------------ccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 02466777777778889999999999
Q ss_pred CCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCcc
Q 008328 284 YPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRL 348 (570)
Q Consensus 284 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~ 348 (570)
|++ .+.+|..|+||||+|+..|+.+++++|+++|++++. +|..|+||||+|+..++.+.+
T Consensus 173 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 173 GAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----CCTTSCCTTTTCSSHHHHHHH
T ss_pred CCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----cCCCCCCHHHHHHhcCcHHHH
Confidence 999 677799999999999999999999999999999985 999999999999998766543
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-40 Score=319.62 Aligned_cols=231 Identities=16% Similarity=0.192 Sum_probs=146.6
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccc-------hhhccCCCCCcHHHHHHhcCCH-HHHHHHHHccCcccccc
Q 008328 12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEA-------VCVRISRNQDTALHIAAGARRT-LFVQELVNLMTPEDLAL 83 (570)
Q Consensus 12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~-------~~~~~~~~g~TpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~ 83 (570)
..+|..+.+||+.||+.|+.++|++||+....+ ++.. +..|.||||.|+..++. +++++|++ .|+++|.
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~--~Gadvn~ 81 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPA--SGLGVNV 81 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------CCCCTTC
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHH--CCCCCCC
Confidence 456777888888888888888888888764332 2223 56777888888877665 36777777 7788888
Q ss_pred cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH
Q 008328 84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI 163 (570)
Q Consensus 84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 163 (570)
+|.+|+||||+|+..|+.+++++|+++|++++ .++..|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus 82 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC 160 (269)
T ss_dssp CCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 88888888888888888888888888888776 57777888888888888888888888888877777777777777777
Q ss_pred HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHH
Q 008328 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLW 243 (570)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~ 243 (570)
..|+.+++++|+++|+++
T Consensus 161 ~~g~~~~v~~Ll~~gadv-------------------------------------------------------------- 178 (269)
T 4b93_B 161 SGGHHELVALLLQHGASI-------------------------------------------------------------- 178 (269)
T ss_dssp HTTCGGGHHHHHHTTCCT--------------------------------------------------------------
T ss_pred HCCCHHHHHHHHHCCCCC--------------------------------------------------------------
Confidence 777777777777666554
Q ss_pred HHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCc-hHHHHHHHHhCch
Q 008328 244 EQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQ-EKIFNLIYELGAH 320 (570)
Q Consensus 244 ~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv~~Ll~~g~~ 320 (570)
+..|..|.||||+|+..|+.++|++|+++|++ ++.+|.+|+||||+|+++++ .++++.|.+.++.
T Consensus 179 -----------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 179 -----------NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp -----------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred -----------CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 33344566666677777788999999999999 67789999999999988775 3444444554443
No 28
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=302.01 Aligned_cols=231 Identities=19% Similarity=0.165 Sum_probs=188.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|..|.||||.|++.|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVE--AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 6778888888888888888888888 77888888888888888888888888888888888887766666788888888
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|+++++++ +.+|.+|.||||+|+..++ ..
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~------~~ 156 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTH------SV 156 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCC------SS
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCC------hH
Confidence 8888888888888888888888888888888888888888888888888876 5778888888888886553 12
Q ss_pred hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhcc-CCChHHHHHHHcCcHHHHHHHHHhCCccc
Q 008328 210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVLIQMYPNLI 288 (570)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 288 (570)
++++. +...+.+++..+. .|.||||+|+..|+.+++++|+++|++ .
T Consensus 157 ~~~~~--------------------------------L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~ 203 (240)
T 3eu9_A 157 DPTRL--------------------------------LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-V 203 (240)
T ss_dssp TTHHH--------------------------------HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-T
T ss_pred HHHHH--------------------------------HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence 22222 2234677777776 799999999999999999999999999 6
Q ss_pred ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 289 WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 289 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
+.+|..|+||||+|++.|+.+++++|++.+++..
T Consensus 204 ~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred CCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 7889999999999999999999999999998764
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=316.50 Aligned_cols=214 Identities=17% Similarity=0.209 Sum_probs=160.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCccc--------ccccccCCChHHHHHHHcCcH-HHHHHHHhcCCCCCCcCCC
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPED--------LALRNKVGNTALCFAAVSGVT-KIAEVMVNKNRELPSIRGN 120 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~--------~~~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~ 120 (570)
|.++.+|||.||+.|+.++|++|++ .+++ ++..|..|.||||.|+..++. ++++.|+++|++++ .+|.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~ 84 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQ 84 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCTT-CCCT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCC
Confidence 7778899999999999999999998 5543 566788899999999988775 47899999999987 6899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328 121 KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200 (570)
Q Consensus 121 ~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 200 (570)
+|+||||+|+..|+.+++++|++.|++++..+.+|.||+|.|+..++.++++.|++.|+++ +.+|.+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~------------ 151 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLS------------ 151 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCC------------
Confidence 9999999999999999999999999999999999999999999999999888888887765 344444
Q ss_pred CccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHH
Q 008328 201 SAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVL 280 (570)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~L 280 (570)
|.||||+|+..|+.+++++|
T Consensus 152 ------------------------------------------------------------g~TpL~~A~~~g~~~~v~~L 171 (269)
T 4b93_B 152 ------------------------------------------------------------GNTPLIYACSGGHHELVALL 171 (269)
T ss_dssp ------------------------------------------------------------CCCHHHHHHHTTCGGGHHHH
T ss_pred ------------------------------------------------------------CCCHHHHHHHCCCHHHHHHH
Confidence 55555666666778899999
Q ss_pred HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCC
Q 008328 281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAP 344 (570)
Q Consensus 281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~ 344 (570)
+++|++ ++.+|..|+||||+|+.+|+.++|++|+++|+|++. +|.+|+||||+|+++++
T Consensus 172 l~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 172 LQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----LNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCSGGGSCTTCH
T ss_pred HHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----cCCCCCCHHHHHHhCCc
Confidence 999999 677899999999999999999999999999999985 99999999999998764
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.1e-38 Score=299.41 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=162.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCc--ccccc-cccCCChHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTP--EDLAL-RNKVGNTALCF 94 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~-~d~~g~TpLh~ 94 (570)
|+||||.||+.|+.++++.|++.++...+.+ |..|+||||+|+..|+.+++++|++ .+ .+++. .|..|.||||+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCCGGGCCCTTSCCHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHh--ccccccccccCCCCCCCHHHH
Confidence 6788888888888888888888766554444 7888888888888888888888888 56 55555 77888888888
Q ss_pred HHHcCcHHHHHHHHhcC--CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHH
Q 008328 95 AAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVAL 172 (570)
Q Consensus 95 A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 172 (570)
|+..|+.+++++|+++| ++++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 157 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 88888888888888887 6665 57788888888888888888888888888888877777777777777777777777
Q ss_pred HHHhhC-cccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCc
Q 008328 173 DLIQHH-PQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDD 251 (570)
Q Consensus 173 ~Ll~~~-~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~ 251 (570)
+|++.+ .++ +.+|
T Consensus 158 ~Ll~~g~~~~-~~~d----------------------------------------------------------------- 171 (228)
T 2dzn_A 158 LLCGLGKSAV-NWQD----------------------------------------------------------------- 171 (228)
T ss_dssp HHHTTTCCCS-CCCC-----------------------------------------------------------------
T ss_pred HHHhcCcccc-cCcC-----------------------------------------------------------------
Confidence 777766 332 2333
Q ss_pred cchhhhccCCChHHHHHHHcCcHHHHHHHH-HhCCcccccccCCCCchhHHHHHhCchHHHHHHHH
Q 008328 252 SKIGELLRKPSRLLFTAVELGNVEFLMVLI-QMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYE 316 (570)
Q Consensus 252 ~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 316 (570)
..|.||||+|+..|+.+++++|+ +.|++ .+.+|.+|+||||+|+.. +++++|++
T Consensus 172 -------~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~ 226 (228)
T 2dzn_A 172 -------KQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN 226 (228)
T ss_dssp -------TTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred -------CCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence 33445555555556677777777 67777 556677777888777543 45555554
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.3e-38 Score=312.76 Aligned_cols=240 Identities=13% Similarity=0.062 Sum_probs=208.9
Q ss_pred HHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHH
Q 008328 26 ALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAE 105 (570)
Q Consensus 26 a~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~ 105 (570)
+...+.+.+..+|... +++.+ |.+|+||||+|+..|+.+++++|++ .|++++.+| |.||||+|+..|+.++++
T Consensus 7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~--g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTGGGSCCT--TCCHHHHHTTSSSCHHHH
T ss_pred HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCC--CCCHHHHHHHcCCHHHHH
Confidence 3456666666777654 46666 8999999999999999999999999 899999884 999999999999999999
Q ss_pred HHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccch-hhHHHHHHHhCcHHHHHHHHhhCcccccc
Q 008328 106 VMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR-IELLVAVIDAGLYDVALDLIQHHPQLAMA 184 (570)
Q Consensus 106 ~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 184 (570)
+|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|++++++..
T Consensus 80 ~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-- 156 (285)
T 3kea_A 80 ILLFSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-- 156 (285)
T ss_dssp HHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--
T ss_pred HHHHCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--
Confidence 9999999988 689999999999999999999999999999999999999 899999999999999999999998762
Q ss_pred cCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChH
Q 008328 185 RDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRL 264 (570)
Q Consensus 185 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tp 264 (570)
....|+||||+|+..|+ . +.++.+++. |++++.+|..|.||
T Consensus 157 ~~~~g~t~L~~A~~~g~-------~---------------------------~~v~~Ll~~-----gad~n~~~~~g~t~ 197 (285)
T 3kea_A 157 DLAILLSCIHITIKNGH-------V---------------------------DMMILLLDY-----MTSTNTNNSLLFIP 197 (285)
T ss_dssp CCSTHHHHHHHHHHTTC-------H---------------------------HHHHHHHHH-----HHHTCTTCCCBCCT
T ss_pred cccCCccHHHHHHHcCh-------H---------------------------HHHHHHHHc-----CCCCCcccCCCCCh
Confidence 12389999999999885 2 344444433 78899999999998
Q ss_pred -HHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 265 -LFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 265 -Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
||+|+..|+.+++++|+++|++ ++..| +.|+..|+.+++++|+++|++++
T Consensus 198 ~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 198 DIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp THHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999 44545 36688999999999999999876
No 32
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.4e-38 Score=302.40 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=190.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
+..++||||.|++.|+.+.++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCCCCCCHHHHH
Confidence 45688999999999999999999985 556688889999999999999999999999999999887 6889999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++++.++ +.+
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~------------------------ 135 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAK------------------------ 135 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC------------------------
T ss_pred HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCc------------------------
Confidence 9999999999999999999988888899999999888888888888876654 222
Q ss_pred hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328 210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 289 (570)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 289 (570)
|..|.||||+|+..|+.+++++|+++|++ .+
T Consensus 136 ------------------------------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 166 (231)
T 3aji_A 136 ------------------------------------------------DHYDATAMHRAAAKGNLKMVHILLFYKAS-TN 166 (231)
T ss_dssp ------------------------------------------------CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SC
T ss_pred ------------------------------------------------CCCCCcHHHHHHHcCCHHHHHHHHhcCCC-cc
Confidence 33466777777788889999999999999 66
Q ss_pred cccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCC
Q 008328 290 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPP 345 (570)
Q Consensus 290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~ 345 (570)
.+|..|+||||+|+..++.+++++|+++|++++. +|..|+||||+|++.++.
T Consensus 167 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~~g~t~l~~A~~~~~~ 218 (231)
T 3aji_A 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI----ENKEEKTPLQVAKGGLGL 218 (231)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----CCTTSCCHHHHSCHHHHH
T ss_pred ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----CCCCCCCHHHHHHhhHHH
Confidence 7799999999999999999999999999999985 999999999999887654
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.4e-38 Score=297.74 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=176.8
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCcccc-cccccCCChHHHHHHHcCcHHHHHHHHhcC--CCCCCcCCCCCCcHHHHH
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPEDL-ALRNKVGNTALCFAAVSGVTKIAEVMVNKN--RELPSIRGNKGATPLCMA 129 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~TpLh~A 129 (570)
|+||||+|++.|+.++++.|++ .+.++ +.+|..|.||||+|+..|+.+++++|+++| .++....+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH--HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHh--cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 7899999999999999999998 45554 458889999999999999999999999998 555533788899999999
Q ss_pred HHcCCHHHHHHHhhcc--CCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCC
Q 008328 130 ALLGHKEMIWYLYSVT--KEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGS 207 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 207 (570)
+..|+.+++++|+++| ++++..+..|.||||.|+..|+.+++++|+++|+++ +.+|
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~--------------------- 137 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKD--------------------- 137 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCC---------------------
T ss_pred HHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccC---------------------
Confidence 9999999999999988 777888888888888888888888888888776665 2333
Q ss_pred chhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcc
Q 008328 208 QLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL 287 (570)
Q Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 287 (570)
..|.||||+|+..|+.+++++|++.|+..
T Consensus 138 ---------------------------------------------------~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 166 (228)
T 2dzn_A 138 ---------------------------------------------------KFNQIPLHRAASVGSLKLIELLCGLGKSA 166 (228)
T ss_dssp ---------------------------------------------------TTSCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred ---------------------------------------------------CCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 34566666677777889999999999333
Q ss_pred cccccCCCCchhHHHHHhCchHHHHHHH-HhCchhhhhhhhcccCCCcHHHHhhhh
Q 008328 288 IWKVDDHSRSMFHIAVVHRQEKIFNLIY-ELGAHKDLIASYKDENNNNMLHLAGKL 342 (570)
Q Consensus 288 ~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~n~~d~~G~TpLh~A~~~ 342 (570)
.+.+|..|+||||+|+..++.+++++|+ +.|++++. +|.+|+||||+|++.
T Consensus 167 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~----~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----VDNKGAKAEDVALNE 218 (228)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----BCTTSCBGGGGCSST
T ss_pred ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc----cCCCCCcHHHHHHHH
Confidence 7788999999999999999999999999 89999985 999999999999764
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.9e-37 Score=293.01 Aligned_cols=217 Identities=20% Similarity=0.229 Sum_probs=178.6
Q ss_pred CCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHH
Q 008328 29 GDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMV 108 (570)
Q Consensus 29 g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll 108 (570)
|+.+++++|++.+ .+++...|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcC-CCcccccCCCCCchHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6677788777764 44544447889999999999999999999998 78999999999999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCC
Q 008328 109 NKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGN 188 (570)
Q Consensus 109 ~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~ 188 (570)
++++.....++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++ +.+|
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~-- 155 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQN-- 155 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCC--
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcC--
Confidence 9988444468889999999999999999999999999998888888888888888888888888888877665 2333
Q ss_pred CCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHH
Q 008328 189 GETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTA 268 (570)
Q Consensus 189 g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A 268 (570)
..|.||||+|
T Consensus 156 ----------------------------------------------------------------------~~g~t~L~~A 165 (223)
T 2f8y_A 156 ----------------------------------------------------------------------NREETPLFLA 165 (223)
T ss_dssp ----------------------------------------------------------------------TTCCCHHHHH
T ss_pred ----------------------------------------------------------------------CCCcCHHHHH
Confidence 3455666667
Q ss_pred HHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 269 VELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 269 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
+..|+.+++++|+++|++ .+.+|..|+||||+|+.+++.+++++|+++|+...
T Consensus 166 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 166 AREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 777788999999999998 56778999999999999999999999999988653
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=7.1e-39 Score=320.92 Aligned_cols=281 Identities=11% Similarity=0.076 Sum_probs=193.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc--------------
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL-------------- 83 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-------------- 83 (570)
+.+|+| ....+++++|+++ +.+++.. |..|.|++| |+.++++.|++ .|++++.
T Consensus 23 ~~~~~~----~~~~dlv~~ll~~-ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~--~g~~~~~~~~~~a~~~~~~~~ 89 (327)
T 1sw6_A 23 TAGPII----TFTHDLTSDFLSS-PLKIMKA-LPSPVVNDN-----EQKMKLEAFLQ--RLLFPEIQEMPTSLNNDSSNR 89 (327)
T ss_dssp --CCEE----ECCTTCCCSTTTS-SCCCEEC-BCCCCCCCH-----HHHHHHHHHHH--HHHC-----------------
T ss_pred cccchh----hhcCchHHHHhhC-CcccccC-CCCCCcccC-----chhHHHHHHHH--hccCCccccchHhhhcccccc
Confidence 445555 4556677776654 6667666 788888877 88888888888 6776554
Q ss_pred ---cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHH
Q 008328 84 ---RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLV 160 (570)
Q Consensus 84 ---~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 160 (570)
+.....+.+|.|+..+..+++++|++.|++++..+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh 169 (327)
T 1sw6_A 90 NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLV 169 (327)
T ss_dssp --------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHH
T ss_pred cccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 11112233577888888888899999888887337888999999999999999999999999999999999999999
Q ss_pred HHHHhCc---HHHHHHHHhhCcccccccCCCCCcHHHHHHc----CCCccccCCchhhhhhhhhcCccchhccchhhhHH
Q 008328 161 AVIDAGL---YDVALDLIQHHPQLAMARDGNGETALHVLAR----KPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHL 233 (570)
Q Consensus 161 ~A~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~ 233 (570)
+|+..|+ .++++.|++.+....+.+|.+|+||||+|++ .+ ..++++.++..........+...
T Consensus 170 ~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~--- 239 (327)
T 1sw6_A 170 KAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG-------CSAAAKYYLDILMGWIVKKQNRP--- 239 (327)
T ss_dssp HHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT-------CHHHHHHHHHHHHHHHHHGGGCC---
T ss_pred HHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc-------cHHHHHHHHHHHHHHHhcccchH---
Confidence 9999888 6788888887744347888999999999987 54 35666666543211100000000
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHH
Q 008328 234 QALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNL 313 (570)
Q Consensus 234 ~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~ 313 (570)
+...+...+++++..+..|.||||.|+. +++|++++ ++.+|..|+||||+|+.+|+.+++++
T Consensus 240 ---------i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~ 301 (327)
T 1sw6_A 240 ---------IQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDA 301 (327)
T ss_dssp ---------EEEC----------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred ---------HHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 0011123388899999999999999996 89999984 55789999999999999999999999
Q ss_pred HHHhCchhhhhhhhcccCCCcHHHHhhhhC
Q 008328 314 IYELGAHKDLIASYKDENNNNMLHLAGKLA 343 (570)
Q Consensus 314 Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 343 (570)
|+++|++++. +|.+|+||||+|++.|
T Consensus 302 Ll~~Gad~~~----~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 302 LLDYGADPFI----ANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHTTCCTTC----CCTTSCCGGGGTCC--
T ss_pred HHHcCCCCcc----cCCCCCCHHHHHHhcC
Confidence 9999999985 9999999999999764
No 36
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-37 Score=307.56 Aligned_cols=269 Identities=16% Similarity=0.170 Sum_probs=216.3
Q ss_pred HHHhcCCHHHHHHHHHccCccccc---------ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 59 IAAGARRTLFVQELVNLMTPEDLA---------LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 59 ~A~~~g~~~~v~~Ll~~~~~~~~~---------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
.+++.++.+.++.++. ...++. ..+..|.||||.|+..|+.+++++|+++|++++ ..|..|.||||+|
T Consensus 4 ~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 80 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIG--SETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQA 80 (299)
T ss_dssp HHHHHHHHHHHHHHHH--TTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHH
T ss_pred hHHHHHHHHHHHHHHc--cccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence 5677888888888887 333322 234578899999999999999999999999988 6899999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..++ .
T Consensus 81 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~ 152 (299)
T 1s70_B 81 CIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAM-------E 152 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHH-------H
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcch-------H
Confidence 9999999999999999999999999999999999999999999999999998 5899999999999987652 2
Q ss_pred hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328 210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 289 (570)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 289 (570)
++++.++ ...+.+++..+..+.++++ +.++.++..+.....
T Consensus 153 ~~~~~ll-------------------------------~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~ 193 (299)
T 1s70_B 153 ELLQNEV-------------------------------NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDV 193 (299)
T ss_dssp HHHHHHH-------------------------------HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCC
T ss_pred HHHHHHH-------------------------------hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchh
Confidence 2222222 2224444444444444443 345567777777667
Q ss_pred cccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhh
Q 008328 290 KVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIE 369 (570)
Q Consensus 290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~ 369 (570)
..+..|.||||+|+.+|+.+++++|++.|++++. +|.+|+||||+|++.|+.+.+.
T Consensus 194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~----~d~~g~tpL~~A~~~~~~~~v~-------------------- 249 (299)
T 1s70_B 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----KDYDGWTPLHAAAHWGKEEACR-------------------- 249 (299)
T ss_dssp CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----CCTTCCCHHHHHHHTTCHHHHH--------------------
T ss_pred hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC----cCCCCCcHHHHHHhcCCHHHHH--------------------
Confidence 7789999999999999999999999999999985 9999999999999998865322
Q ss_pred hhcC-chhhhhhccCCCCcchhhhhhhhhhhhh
Q 008328 370 KVVQ-PSYREAKNSEGRTPHILFSEEHRRLVRE 401 (570)
Q Consensus 370 ~~~~-~~~~~~~n~~G~Tpl~~a~~~~~~~~~~ 401 (570)
.++. ..+.+.+|..|+||+++|.++..+.+++
T Consensus 250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~ 282 (299)
T 1s70_B 250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282 (299)
T ss_dssp HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 2222 1455889999999999998876554443
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=289.03 Aligned_cols=231 Identities=17% Similarity=0.143 Sum_probs=205.8
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCC
Q 008328 11 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGN 89 (570)
Q Consensus 11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~ 89 (570)
++..|..|.||||.|++.|+.+++++|++. +.+++.+ +..|.||||+|+..|+.+++++|++ .+.+++..+ ..|.
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~ 77 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQP-DKENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNS 77 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCBTTTTB
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHH--cCCcchhhcCCcCC
Confidence 566788999999999999999999999986 4667666 8999999999999999999999999 788887555 4599
Q ss_pred hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc-H
Q 008328 90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL-Y 168 (570)
Q Consensus 90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~ 168 (570)
||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++ .
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~ 156 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChH
Confidence 99999999999999999999999987 689999999999999999999999999999999999999999999997766 8
Q ss_pred HHHHHHHhhCcccccccCC-CCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHH
Q 008328 169 DVALDLIQHHPQLAMARDG-NGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVL 247 (570)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l 247 (570)
+++++|++.++++. ..+. .|.||||+|+..++ . +.++.+++.
T Consensus 157 ~~~~~L~~~~~~~~-~~~~~~g~t~L~~A~~~~~-------~---------------------------~~v~~Ll~~-- 199 (240)
T 3eu9_A 157 DPTRLLLTFNVSVN-LGDKYHKNTALHWAVLAGN-------T---------------------------TVISLLLEA-- 199 (240)
T ss_dssp TTHHHHHHTTCCTT-CCCTTTCCCHHHHHHHHTC-------H---------------------------HHHHHHHHH--
T ss_pred HHHHHHHhcCCCcc-hhhccCCCcHHHHHHHcCC-------H---------------------------HHHHHHHHc--
Confidence 99999999999984 6665 99999999999885 2 344444433
Q ss_pred hcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCc
Q 008328 248 LLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN 286 (570)
Q Consensus 248 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 286 (570)
|++++..|..|.||||+|++.|+.+++++|++++++
T Consensus 200 ---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 200 ---GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp ---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred ---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 788999999999999999999999999999999887
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.9e-37 Score=299.96 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=199.0
Q ss_pred CCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328 9 GGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG 88 (570)
Q Consensus 9 ~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g 88 (570)
.+++.+|.+|+||||+||..|+.++++.|++. +.+++.+ +|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~d~~g 95 (285)
T 3kea_A 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLF--SGLDDSQFDDKG 95 (285)
T ss_dssp TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHHH--TTCCTTCCCTTS
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCC
Confidence 47999999999999999999999999999986 5566654 59999999999999999999999 899999999999
Q ss_pred ChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCC-CcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328 89 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKG-ATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL 167 (570)
Q Consensus 89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 167 (570)
.||||+|+..|+.+++++|+++|++++ .++..| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGH 173 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcCh
Confidence 999999999999999999999999987 688888 89999999999999999999999876322 289999999999999
Q ss_pred HHHHHHHHhhCcccccccCCCCCcH-HHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHH
Q 008328 168 YDVALDLIQHHPQLAMARDGNGETA-LHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQV 246 (570)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~d~~g~tp-Lh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~ 246 (570)
.+++++|+++|+++ +.+|..|+|| ||+|+..++ .++++.|
T Consensus 174 ~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~-------~~~v~~L------------------------------- 214 (285)
T 3kea_A 174 VDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKD-------IEMLQAL------------------------------- 214 (285)
T ss_dssp HHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTC-------HHHHHHH-------------------------------
T ss_pred HHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCC-------HHHHHHH-------------------------------
Confidence 99999999999998 6899999998 999999884 3444333
Q ss_pred HhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcc
Q 008328 247 LLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL 287 (570)
Q Consensus 247 l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 287 (570)
...|++++..|. .|+..|+.+++++|+++|++.
T Consensus 215 -l~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 215 -FKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp -TTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred -HHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 344777777663 567799999999999999883
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4e-37 Score=308.23 Aligned_cols=246 Identities=11% Similarity=0.042 Sum_probs=195.6
Q ss_pred eeccccCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhc----------------cCCCCCcHHHHHHhcCCH
Q 008328 3 LLKCLKGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR----------------ISRNQDTALHIAAGARRT 66 (570)
Q Consensus 3 ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~----------------~~~~g~TpLh~A~~~g~~ 66 (570)
++...|++++..|..|.|+++ |+.++++.||+++ .+.+.. ......+.+|.|+..+..
T Consensus 37 ~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 110 (327)
T 1sw6_A 37 DFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRL-LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ 110 (327)
T ss_dssp STTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHH-HC-------------------------------CHHHHHH
T ss_pred HHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhc-cCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence 355678999999999999988 9999999999863 222210 011223346889988999
Q ss_pred HHHHHHHHccCcccccc-cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC---HHHHHHHh
Q 008328 67 LFVQELVNLMTPEDLAL-RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH---KEMIWYLY 142 (570)
Q Consensus 67 ~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll 142 (570)
++++.|++ .|+++|. +|.+|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+ .++++.|+
T Consensus 111 ~~~~~l~~--~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll 187 (327)
T 1sw6_A 111 EVNDAFPN--TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALL 187 (327)
T ss_dssp HHHHHCTT--SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred HHHHHHHh--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHH
Confidence 99999999 8999999 89999999999999999999999999999998 799999999999999998 78889999
Q ss_pred hcc-CCccccccchhhHHHHHHH----hCcHHHHHHHHhh--------------------CcccccccCCCCCcHHHHHH
Q 008328 143 SVT-KEEDLKEEDRIELLVAVID----AGLYDVALDLIQH--------------------HPQLAMARDGNGETALHVLA 197 (570)
Q Consensus 143 ~~g-~~~~~~~~~g~t~L~~A~~----~~~~~~~~~Ll~~--------------------~~~~~~~~d~~g~tpLh~A~ 197 (570)
+.+ ++++.++..|.||||+|+. .|+.++++.|++. ++++ +.+|.+|+||||.|+
T Consensus 188 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~ 266 (327)
T 1sw6_A 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENL 266 (327)
T ss_dssp HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHC
T ss_pred HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHH
Confidence 887 7899999999999999999 8999999999988 5555 577888888888876
Q ss_pred cCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHH
Q 008328 198 RKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFL 277 (570)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v 277 (570)
. ++.+++. +++.+|..|+||||+|++.|+.++|
T Consensus 267 ~----------------------------------------~~~Ll~~-------~~n~~d~~G~TpLh~A~~~g~~~~v 299 (327)
T 1sw6_A 267 D----------------------------------------LKWIIAN-------MLNAQDSNGDTCLNIAARLGNISIV 299 (327)
T ss_dssp S----------------------------------------HHHHHHH-------TTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred H----------------------------------------HHHHHHh-------CCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 3 2222222 5788899999999999999999999
Q ss_pred HHHHHhCCcccccccCCCCchhHHHHHhC
Q 008328 278 MVLIQMYPNLIWKVDDHSRSMFHIAVVHR 306 (570)
Q Consensus 278 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 306 (570)
++|+++|++ ++.+|.+|+||||+|+++|
T Consensus 300 ~~Ll~~Gad-~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 300 DALLDYGAD-PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred HHHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence 999999999 6788999999999998764
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.6e-35 Score=279.11 Aligned_cols=197 Identities=18% Similarity=0.154 Sum_probs=127.0
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCC----CcCCCCCCcHHH
Q 008328 52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELP----SIRGNKGATPLC 127 (570)
Q Consensus 52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~TpLh 127 (570)
.|+||||+|++.|+.++++.|++. .|++++.+|.+|+||||+|+..|+.+++++|+++|+++. ..+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 466777777777777777777762 367777777777777777777777777777777766542 235566777777
Q ss_pred HHHHcCCHHHHHHHhhccCCcccccc-------------chhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHH
Q 008328 128 MAALLGHKEMIWYLYSVTKEEDLKEE-------------DRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALH 194 (570)
Q Consensus 128 ~A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh 194 (570)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga--------------- 145 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA--------------- 145 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC---------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC---------------
Confidence 77777777777777777777666554 34444444444444444444444443
Q ss_pred HHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcH
Q 008328 195 VLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNV 274 (570)
Q Consensus 195 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~ 274 (570)
+++.+|..|.||||+|+..|+.
T Consensus 146 ----------------------------------------------------------~~~~~d~~g~t~L~~A~~~~~~ 167 (232)
T 2rfa_A 146 ----------------------------------------------------------DIRAQDSLGNTVLHILILQPNK 167 (232)
T ss_dssp ----------------------------------------------------------CTTCCCTTSCCHHHHHHTCSCH
T ss_pred ----------------------------------------------------------CCCCCCCCCCCHHHHHHHcCCh
Confidence 3444444444555555555555
Q ss_pred HHH----HHHHHhCCccc-----ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 275 EFL----MVLIQMYPNLI-----WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 275 ~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
+++ ++|+++|++.. +.+|..|+||||+|+.+|+.+++++|+++|.+..
T Consensus 168 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 168 TFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp HHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 554 77777777643 5678888888888888888888888888876654
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.8e-36 Score=289.01 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=67.7
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCcc---chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCCh
Q 008328 14 NCFTSYAPLHLAALKGDWDFARNFFNLNPE---AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT 90 (570)
Q Consensus 14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~---~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 90 (570)
.|.+|+||||+|+..|+.++++.|++.... +++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t 80 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFRGNT 80 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTTCCC
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCC
Confidence 455555555555555555555555543221 23333 4555555555555555555555555 45555555555555
Q ss_pred HHHHHHHcCcHHHHHHHHhcCCCC-----CCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc
Q 008328 91 ALCFAAVSGVTKIAEVMVNKNREL-----PSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE 152 (570)
Q Consensus 91 pLh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~ 152 (570)
|||+|+..|+.+++++|++++++. ....+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 147 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 555555555555555555555431 12344455555555555555555555555555444433
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=6e-35 Score=277.60 Aligned_cols=192 Identities=19% Similarity=0.202 Sum_probs=175.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccc-----cccccCCChH
Q 008328 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL-----ALRNKVGNTA 91 (570)
Q Consensus 17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~Tp 91 (570)
.|+||||.||+.|+.++++.|++..+.+++.+ |..|+||||+|+..|+.+++++|++ .++++ +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcCH
Confidence 58999999999999999999999878888887 9999999999999999999999999 67776 6778899999
Q ss_pred HHHHHHcCcHHHHHHHHhcCCCCCCcCCC-------------CCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhH
Q 008328 92 LCFAAVSGVTKIAEVMVNKNRELPSIRGN-------------KGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL 158 (570)
Q Consensus 92 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 158 (570)
||+|+..|+.+++++|+++|++++. ++. .|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 9999999999999999999999874 443 79999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHH----HHHHhhCcccc-----cccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcC
Q 008328 159 LVAVIDAGLYDVA----LDLIQHHPQLA-----MARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSV 219 (570)
Q Consensus 159 L~~A~~~~~~~~~----~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~ 219 (570)
||+|+..|+.+++ ++|++.+++.. +.+|..|+||||+|++.|+ .++++.|++.+
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~-------~~~v~~Ll~~g 220 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN-------IVMFQHLMQKR 220 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC-------HHHHHHHHhcC
Confidence 9999999999988 99999998764 5789999999999999984 66677666554
No 43
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.9e-34 Score=272.29 Aligned_cols=204 Identities=20% Similarity=0.168 Sum_probs=185.1
Q ss_pred ccccCCcccC-CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccc
Q 008328 5 KCLKGGVERN-CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLAL 83 (570)
Q Consensus 5 ~~~~~~~~~~-d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 83 (570)
...|.+++.. |.+|+||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++. .+.+++.
T Consensus 11 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~ 87 (223)
T 2f8y_A 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADAQGVFQILIRN-RATDLDA 87 (223)
T ss_dssp EETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHB-TTSCTTC
T ss_pred HHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence 3456777665 88999999999999999999999986 5667766 89999999999999999999999994 3348999
Q ss_pred cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHH
Q 008328 84 RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVI 163 (570)
Q Consensus 84 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 163 (570)
+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 88 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 166 (223)
T 2f8y_A 88 RMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA 166 (223)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH
Confidence 99999999999999999999999999999988 68999999999999999999999999999999999999999999999
Q ss_pred HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCc
Q 008328 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVP 220 (570)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~ 220 (570)
..|+.+++++|+++|++. +.+|..|.||||+|++.++ .++++.|+..+.
T Consensus 167 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~-------~~i~~~L~~~g~ 215 (223)
T 2f8y_A 167 REGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMH-------HDIVRLLDEYNL 215 (223)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcc-------hHHHHHHHHcCC
Confidence 999999999999999998 6899999999999999984 667777665543
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.1e-36 Score=285.31 Aligned_cols=217 Identities=16% Similarity=0.194 Sum_probs=166.2
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccC--cccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMT--PEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC 127 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh 127 (570)
|.+|+||||+|+..|+.+++++|++... +++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~ 83 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLH 83 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHH
Confidence 7888899999999999888888887311 23688888888899999888888888888888888877 58888888888
Q ss_pred HHHHcCCHHHHHHHhhccCCc------cccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328 128 MAALLGHKEMIWYLYSVTKEE------DLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 201 (570)
Q Consensus 128 ~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~ 201 (570)
+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------------- 140 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG----------------------- 140 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-----------------------
T ss_pred HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----------------------
Confidence 888888888888888888753 333444444444444444444444444444
Q ss_pred ccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhcc-CCChHHHHHHHcCcHHHHHHH
Q 008328 202 AFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLR-KPSRLLFTAVELGNVEFLMVL 280 (570)
Q Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~v~~L 280 (570)
++++..+. .|.||||+|+..|+.+++++|
T Consensus 141 --------------------------------------------------~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 170 (236)
T 1ikn_D 141 --------------------------------------------------ADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170 (236)
T ss_dssp --------------------------------------------------CCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 44444554 677888888888899999999
Q ss_pred HHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHhCchhhhhhhhcccCCCcHHHHhhhhC
Q 008328 281 IQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKDLIASYKDENNNNMLHLAGKLA 343 (570)
Q Consensus 281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 343 (570)
+++|++ .+.+|..|+||||+|+.+++.+++++|+++|++... ..++.+|.||.+.+....
T Consensus 171 l~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 171 LKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ--MLPESEDEESYDTESEFT 230 (236)
T ss_dssp HTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS--SCCCCCTTTCCCCC----
T ss_pred HHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh--cCCccchHHHHhhhcccc
Confidence 999999 677899999999999999999999999999998763 348999999998876543
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6e-34 Score=264.31 Aligned_cols=198 Identities=18% Similarity=0.180 Sum_probs=130.6
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328 51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130 (570)
Q Consensus 51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~ 130 (570)
..+.||||.|+..|+.+.++.|++. .+.+++.+|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence 3456666666666666666666663 333666666666666666666666666666666666655 45666666666666
Q ss_pred HcCCHHHHHHHh-hccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 131 LLGHKEMIWYLY-SVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 131 ~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
..|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++|+++++...+.+|..|+||||+|+..++.
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~------- 153 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG------- 153 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC-------
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc-------
Confidence 666666666666 334466666666666666666666666666666666322356677777777777765520
Q ss_pred hhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccc
Q 008328 210 GFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIW 289 (570)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 289 (570)
..++.+++++|+++|++ .+
T Consensus 154 ------------------------------------------------------------~~~~~~~v~~Ll~~ga~-~~ 172 (201)
T 3hra_A 154 ------------------------------------------------------------NQLYQDIVKLLMENGAD-QS 172 (201)
T ss_dssp ------------------------------------------------------------SHHHHHHHHHHHHTTCC-TT
T ss_pred ------------------------------------------------------------hhhHHHHHHHHHHCCCC-CC
Confidence 01236788888888888 56
Q ss_pred cccCCCCchhHHHHHhCchHHHHHHHHhC
Q 008328 290 KVDDHSRSMFHIAVVHRQEKIFNLIYELG 318 (570)
Q Consensus 290 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g 318 (570)
.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 173 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 173 IKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 67888888888888888888888888765
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1e-33 Score=262.69 Aligned_cols=191 Identities=18% Similarity=0.198 Sum_probs=176.1
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF 94 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 94 (570)
+..+.||||.||..|+.+.++.+++..+.+++.+ |.+|+||||+|++.|+.+++++|++ .|++++.+|..|.||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHH
Confidence 3568999999999999999999999887788877 8999999999999999999999999 899999999999999999
Q ss_pred HHHcCcHHHHHHHHhcC-CCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc-CCccccccchhhHHHHHHHhCc-----
Q 008328 95 AAVSGVTKIAEVMVNKN-RELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT-KEEDLKEEDRIELLVAVIDAGL----- 167 (570)
Q Consensus 95 A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~----- 167 (570)
|+..|+.+++++|++++ .+++ .+|..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLN-KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred HHHcCCHHHHHHHHhccCcccc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 99999999999999555 4555 79999999999999999999999999999 9999999999999999999988
Q ss_pred HHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh
Q 008328 168 YDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY 217 (570)
Q Consensus 168 ~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~ 217 (570)
.+++++|+++|+++ +.+|.+|+||||+|++.++ .++++.|+.
T Consensus 158 ~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~ 199 (201)
T 3hra_A 158 QDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGY-------TEISKILAQ 199 (201)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC-------HHHHHHHHT
T ss_pred HHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCC-------HhHHHHHHh
Confidence 99999999999998 6899999999999999984 666666654
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.2e-34 Score=279.85 Aligned_cols=197 Identities=17% Similarity=0.126 Sum_probs=131.5
Q ss_pred CCcHHHHHHhcCCHH----HHHHHHHccCcccccc----cccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCc----
Q 008328 53 QDTALHIAAGARRTL----FVQELVNLMTPEDLAL----RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSI---- 117 (570)
Q Consensus 53 g~TpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~---- 117 (570)
|+||||.|++.|+.+ ++++|++ .|++++. +|.+|+||||+|+.. |+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 556666666666664 3444444 4566665 566666666666666 6666666666665544311
Q ss_pred ------CCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccc-------------hhhHHHHHHHhCcHHHHHHHHh--
Q 008328 118 ------RGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEED-------------RIELLVAVIDAGLYDVALDLIQ-- 176 (570)
Q Consensus 118 ------~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~~~~~~~~~Ll~-- 176 (570)
+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 2356777777777777777777777777777776665 5666666666666666666666
Q ss_pred -hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchh
Q 008328 177 -HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIG 255 (570)
Q Consensus 177 -~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~ 255 (570)
.|+++ +.+|.+|+||||+|+..+
T Consensus 160 ~~ga~~-n~~d~~g~TpLh~A~~~~------------------------------------------------------- 183 (256)
T 2etb_A 160 HQPASL-EATDSLGNTVLHALVMIA------------------------------------------------------- 183 (256)
T ss_dssp SCCCCT-TCCCTTSCCHHHHHHHHC-------------------------------------------------------
T ss_pred ccCCCc-CccCCCCCCHHHHHHHcc-------------------------------------------------------
Confidence 55554 456666666666666521
Q ss_pred hhccCCChHHHHHHHcCcH-------HHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 256 ELLRKPSRLLFTAVELGNV-------EFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 256 ~~d~~g~tpLh~A~~~g~~-------~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
.++. +++++|+++|+++. +.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus 184 ---------------~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 184 ---------------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp ---------------CSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------cCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 2233 48888888888842 6788999999999999999999999999887765
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.1e-34 Score=281.07 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=88.3
Q ss_pred cCCcccCCCCCChHHHHHHHcCCHHHHHHHHhc---Cccchh---hccCCCCCcHHHHHHhc---CCHHHHHHHHHccCc
Q 008328 8 KGGVERNCFTSYAPLHLAALKGDWDFARNFFNL---NPEAVC---VRISRNQDTALHIAAGA---RRTLFVQELVNLMTP 78 (570)
Q Consensus 8 ~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~---~~~~~~---~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~ 78 (570)
+...+..|..|+||||.||+.|+.++|+.|++. .+.+++ ...|..|+||||+|+.. |+.+++++|++ .|
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~--~g 80 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD--VA 80 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH--HH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH--hh
Confidence 345566677777777777777777777777653 222222 12266777777777765 77777777777 55
Q ss_pred ccc-------cc----cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328 79 EDL-------AL----RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147 (570)
Q Consensus 79 ~~~-------~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~ 147 (570)
+++ +. +|..|.||||+|+..|+.+++++|+++|++++ .++..+. ....+
T Consensus 81 a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~-------------------~~~~~ 140 (273)
T 2pnn_A 81 RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDF-------------------FKKTK 140 (273)
T ss_dssp HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGG-------------------GSSCS
T ss_pred ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccc-------------------ccccc
Confidence 542 21 34455555555555555555555555555554 2333000 00000
Q ss_pred ccccccchhhHHHHHHHhCcHHHHHHHHh---hCcccccccCCCCCcHHHHHHcCC
Q 008328 148 EDLKEEDRIELLVAVIDAGLYDVALDLIQ---HHPQLAMARDGNGETALHVLARKP 200 (570)
Q Consensus 148 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~~ 200 (570)
.+..+..|.||||+|+..|+.+++++|++ .|+++ +.+|.+|+||||+|+..+
T Consensus 141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~ 195 (273)
T 2pnn_A 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVA 195 (273)
T ss_dssp SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHcc
Confidence 00001145555555555555555555555 45554 456666666666666554
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.1e-33 Score=252.14 Aligned_cols=158 Identities=25% Similarity=0.280 Sum_probs=148.1
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcC
Q 008328 20 APLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSG 99 (570)
Q Consensus 20 t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g 99 (570)
++|+.||+.|+.++|+.||+. +.+++.+ |.+|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~--~gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHh--cccchhhhccCCCCHHHHHHHcC
Confidence 479999999999999999986 6778887 9999999999999999999999999 89999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCc
Q 008328 100 VTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 179 (570)
Q Consensus 100 ~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 179 (570)
+.+++++|+++|++++ .+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|++.|+.+++++|+++|+
T Consensus 82 ~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 82 HKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred CHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 9999999999999998 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 008328 180 QLA 182 (570)
Q Consensus 180 ~~~ 182 (570)
++.
T Consensus 161 ~ie 163 (169)
T 4gpm_A 161 WLE 163 (169)
T ss_dssp ---
T ss_pred CcC
Confidence 874
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.2e-33 Score=275.64 Aligned_cols=228 Identities=13% Similarity=0.115 Sum_probs=172.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcc--Cccccc----ccccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCC----
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLM--TPEDLA----LRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPS---- 116 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~---- 116 (570)
|..|+||||+|++.|+.++|+.|++.. .+.+++ .+|..|.||||+|+.. |+.+++++|+++|++...
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 889999999999999999988888721 344554 4588999999999986 999999999998865321
Q ss_pred ------cCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCC
Q 008328 117 ------IRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGE 190 (570)
Q Consensus 117 ------~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~ 190 (570)
..|..|.||||+|+..|+.+++++|+++|++++..+..+.. ...+ ....+..|+
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~-~~~~~~~g~ 149 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-------------------KKTK-GRPGFYFGE 149 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------SSCS-SSCCCCSCB
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------cccc-ccccccCCC
Confidence 15678999999999999999999999999999888776521 0011 235667899
Q ss_pred cHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCCChHHHHHHH
Q 008328 191 TALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVE 270 (570)
Q Consensus 191 tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~ 270 (570)
||||+|+..|+ .++++.|+... ..+++++.+|..|+||||+|+.
T Consensus 150 tpL~~A~~~g~-------~~~v~~Ll~~~-----------------------------~~gad~~~~d~~g~tpLh~A~~ 193 (273)
T 2pnn_A 150 LPLSLAACTNQ-------LAIVKFLLQNS-----------------------------WQPADISARDSVGNTVLHALVE 193 (273)
T ss_dssp SHHHHHHHTTC-------HHHHHHHHHCS-----------------------------SCCCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCC-------HHHHHHHHhcc-----------------------------cCCCCceeeCCCCCcHHHHHHH
Confidence 99999999985 33333332210 0488999999999999999999
Q ss_pred cCc---------HHHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCc-hhhhhhhhcccCCCc
Q 008328 271 LGN---------VEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGA-HKDLIASYKDENNNN 334 (570)
Q Consensus 271 ~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~n~~d~~G~T 334 (570)
.|+ .+++++|+++|+++. +.+|..|+||||+|+.+|+.+++++|+++|+ |+.. .+..+.+
T Consensus 194 ~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~----~~~~~~~ 269 (273)
T 2pnn_A 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC----RHAAAHH 269 (273)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---------------
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh----hhhhhhh
Confidence 998 899999999999954 3589999999999999999999999999999 6663 6666666
Q ss_pred HHH
Q 008328 335 MLH 337 (570)
Q Consensus 335 pLh 337 (570)
|-|
T Consensus 270 ~~~ 272 (273)
T 2pnn_A 270 HHH 272 (273)
T ss_dssp ---
T ss_pred ccC
Confidence 543
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=9.8e-34 Score=273.54 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=168.2
Q ss_pred CCChHHHHHHHcCCHHHH----HHHHhcCccchhh---ccCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccc---
Q 008328 17 TSYAPLHLAALKGDWDFA----RNFFNLNPEAVCV---RISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLAL--- 83 (570)
Q Consensus 17 ~g~t~Lh~Aa~~g~~~~v----~~ll~~~~~~~~~---~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~--- 83 (570)
.|+||||.||+.|+.+.+ +++++. +.+++. ..|..|+||||+|+.. |+.+++++|++ .|++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ--IDKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH--HHHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh--cCCcccchhh
Confidence 489999999999999855 444444 566666 2389999999999999 99999999999 7887763
Q ss_pred --------cccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCC-------------CCcHHHHHHHcCCHHHHHHHh
Q 008328 84 --------RNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK-------------GATPLCMAALLGHKEMIWYLY 142 (570)
Q Consensus 84 --------~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~TpLh~A~~~g~~~~v~~Ll 142 (570)
+|..|.||||+|+..|+.+++++|+++|++++ .++.. |.||||+|+..|+.+++++|+
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 34789999999999999999999999999988 46665 999999999999999999999
Q ss_pred h---ccCCccccccchhhHHHHHHH--hCcHH-------HHHHHHhhCcccc------cccCCCCCcHHHHHHcCCCccc
Q 008328 143 S---VTKEEDLKEEDRIELLVAVID--AGLYD-------VALDLIQHHPQLA------MARDGNGETALHVLARKPSAFA 204 (570)
Q Consensus 143 ~---~g~~~~~~~~~g~t~L~~A~~--~~~~~-------~~~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~~~~~~ 204 (570)
+ +|++++.+|.+|.||||+|+. .++.+ ++++|+++|+++. +.+|.+|+||||+|+..|+
T Consensus 157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--- 233 (256)
T 2etb_A 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK--- 233 (256)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC---
T ss_pred hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC---
Confidence 9 999999999999999999999 78888 9999999999873 5899999999999999984
Q ss_pred cCCchhhhhhhhhcC
Q 008328 205 SGSQLGFWRRCIYSV 219 (570)
Q Consensus 205 ~~~~~~~~~~l~~~~ 219 (570)
.++++.|++.+
T Consensus 234 ----~~~v~~Ll~~g 244 (256)
T 2etb_A 234 ----IEIFRHILQRE 244 (256)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHhCC
Confidence 66777766554
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=7.3e-32 Score=242.04 Aligned_cols=157 Identities=23% Similarity=0.262 Sum_probs=146.0
Q ss_pred cHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCC
Q 008328 55 TALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGH 134 (570)
Q Consensus 55 TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~ 134 (570)
++|+.||+.|+.++|+.|++ .|+|+|.+|.+|+||||+|+..++.+++++|+++|++++ .+|..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCC
Confidence 57999999999999999999 899999999999999999999999999999999999988 699999999999999999
Q ss_pred HHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhh
Q 008328 135 KEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRR 214 (570)
Q Consensus 135 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ 214 (570)
.+++++|+++|++++.+|.+|+||||+|++.|+.+++++|+++|+++ +.+|.+|+||||+|++.|+ .++++.
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~-------~~iv~~ 154 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGN-------EEVVKL 154 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC-------HHHHHH
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC-------HHHHHH
Confidence 99999999999999999999999999999999999999999999998 6899999999999999984 677777
Q ss_pred hhhcCccc
Q 008328 215 CIYSVPGM 222 (570)
Q Consensus 215 l~~~~~~~ 222 (570)
|++.+.++
T Consensus 155 Ll~~GA~i 162 (169)
T 4gpm_A 155 LEKQGGWL 162 (169)
T ss_dssp HHTC----
T ss_pred HHHCCCCc
Confidence 77665554
No 53
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.98 E-value=5.9e-32 Score=244.34 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=154.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 97 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 97 (570)
+.||||.||..|+.+.++.+++..+..++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCchhhcccCCCHHHHHHH
Confidence 5689999999999999999999877767776 8999999999999999999999999 799999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328 98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH 177 (570)
Q Consensus 98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 177 (570)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999988 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCcH
Q 008328 178 HPQLAMARDGNGETA 192 (570)
Q Consensus 178 ~~~~~~~~d~~g~tp 192 (570)
+++. ..++..|.||
T Consensus 158 ~~~~-~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKL-FQSNLVPADP 171 (172)
T ss_dssp HHHH-SCC-------
T ss_pred HHHH-hcccCCCCCC
Confidence 9988 4778888876
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=1.9e-32 Score=265.04 Aligned_cols=140 Identities=16% Similarity=0.077 Sum_probs=87.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc--------------cchhhHHHHHHHhCcHHHHHHHHh---hCccc
Q 008328 119 GNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE--------------EDRIELLVAVIDAGLYDVALDLIQ---HHPQL 181 (570)
Q Consensus 119 ~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~Ll~---~~~~~ 181 (570)
|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++ .|+++
T Consensus 90 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~ 169 (260)
T 3jxi_A 90 YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL 169 (260)
T ss_dssp SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC
Confidence 3355555555555555555555555555555555 345555555555555566666666 55555
Q ss_pred ccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhcCccchhhhccCC
Q 008328 182 AMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLLDDSKIGELLRKP 261 (570)
Q Consensus 182 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~~~~~~~~~d~~g 261 (570)
+.+|.+|+||||+|+..++.. . +.
T Consensus 170 -~~~d~~g~TpLh~A~~~~~~~-----~---------------------------~~----------------------- 193 (260)
T 3jxi_A 170 -RRQDSRGNTVLHALVAIADNT-----R---------------------------EN----------------------- 193 (260)
T ss_dssp -TCCCTTSCCHHHHHHHHCCSS-----H---------------------------HH-----------------------
T ss_pred -cccCCCCCcHHHHHHHhccCc-----h---------------------------hH-----------------------
Confidence 466777777777777644210 0 00
Q ss_pred ChHHHHHHHcCcHHHHHHHHHhCCccc------ccccCCCCchhHHHHHhCchHHHHHHHHhCchhh
Q 008328 262 SRLLFTAVELGNVEFLMVLIQMYPNLI------WKVDDHSRSMFHIAVVHRQEKIFNLIYELGAHKD 322 (570)
Q Consensus 262 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 322 (570)
.....+++++|+++|+++. +.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 194 --------~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 194 --------TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp --------HHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 0012467778888877742 5678888888888888888888888888887654
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.5e-32 Score=265.80 Aligned_cols=196 Identities=17% Similarity=0.164 Sum_probs=168.8
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHh---cCccchhhc---cCCCCCcHHHHHH---hcCCHHHHHHHHHccCccc-----
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFN---LNPEAVCVR---ISRNQDTALHIAA---GARRTLFVQELVNLMTPED----- 80 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~---~~~~~~~~~---~~~~g~TpLh~A~---~~g~~~~v~~Ll~~~~~~~----- 80 (570)
+..|+||||.||+.|+.+.++.+++ ..+.+++.. .|..|+||||+|+ +.|+.+++++|++ .+++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD--IAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH--HHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH--hcccccchH
Confidence 5678999999999999997666665 234444433 1477999999999 7799999999999 5644
Q ss_pred ------ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCC--------------CCCCcHHHHHHHcCCHHHHHH
Q 008328 81 ------LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRG--------------NKGATPLCMAALLGHKEMIWY 140 (570)
Q Consensus 81 ------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~TpLh~A~~~g~~~~v~~ 140 (570)
++.+|..|.||||+|+..|+.+++++|+++|++++ .++ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 45566699999999999999999999999999988 466 689999999999999999999
Q ss_pred Hhh---ccCCccccccchhhHHHHHHHhCc---------HHHHHHHHhhCcccc------cccCCCCCcHHHHHHcCCCc
Q 008328 141 LYS---VTKEEDLKEEDRIELLVAVIDAGL---------YDVALDLIQHHPQLA------MARDGNGETALHVLARKPSA 202 (570)
Q Consensus 141 Ll~---~g~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~tpLh~A~~~~~~ 202 (570)
|++ +|++++.+|..|.||||+|+..++ .+++++|+++|+++. +.+|.+|+||||+|++.|+
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~- 237 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK- 237 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC-
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC-
Confidence 999 999999999999999999999888 799999999998873 4789999999999999984
Q ss_pred cccCCchhhhhhhhhcCc
Q 008328 203 FASGSQLGFWRRCIYSVP 220 (570)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~ 220 (570)
.++++.|+++++
T Consensus 238 ------~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 238 ------IGIFQHIIRREI 249 (260)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhCC
Confidence 677777765543
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.1e-31 Score=244.21 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=153.3
Q ss_pred CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCC
Q 008328 10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGN 89 (570)
Q Consensus 10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 89 (570)
.+|.+|.+|+||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 102 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKDFSGK 102 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTSC
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCC
Confidence 4677899999999999999999999999986 5566666 8899999999999999999999999 7999999999999
Q ss_pred hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHH
Q 008328 90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYD 169 (570)
Q Consensus 90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 169 (570)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 99999999999999999999999987 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 008328 170 VALDLIQHH 178 (570)
Q Consensus 170 ~~~~Ll~~~ 178 (570)
++++|++.+
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999875
No 57
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=8.3e-33 Score=279.71 Aligned_cols=275 Identities=10% Similarity=-0.014 Sum_probs=160.0
Q ss_pred CChHHHHHHH-cCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCCChHHH
Q 008328 18 SYAPLHLAAL-KGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVGNTALC 93 (570)
Q Consensus 18 g~t~Lh~Aa~-~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh 93 (570)
+.++++.|+. .++.+.+++++++ +.+++||||+|++.|+.++|++|++ .|+. .+..|..|.||||
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~--~ga~~~~~~~~~~~~~tpL~ 133 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCL--LLTSDEIVKVIQAENYQAFR 133 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTT--C--CCSSCC--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHH--cCCcHHHHHHhccCCCCHHH
Confidence 4556666665 4566666665543 3345588888888888888888877 5552 1234456677888
Q ss_pred HHHHcCcHHHHHHHHhcCCCCC--CcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccc--cccchhhHHHHHH-HhCcH
Q 008328 94 FAAVSGVTKIAEVMVNKNRELP--SIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDL--KEEDRIELLVAVI-DAGLY 168 (570)
Q Consensus 94 ~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~ 168 (570)
+|++.|+.++|++|+++|++.. ...+.+ .||||+|+..|+.++|++|+++|++++. .+.+|.||||+|+ .+|+.
T Consensus 134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ 212 (376)
T 2aja_A 134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 212 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence 8888888888888888876521 112222 7788888888888888888888877776 7777788888888 88888
Q ss_pred HHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHH------------H
Q 008328 169 DVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQA------------L 236 (570)
Q Consensus 169 ~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~------------~ 236 (570)
+++++|++.|+ .|.||||+|+..|+ .++++.|+..+.++... .++++.++ .
T Consensus 213 eiv~~Ll~~ga--------~~~taL~~Aa~~g~-------~evv~lL~~~ga~~~~~--~~~l~~A~~~g~~~vv~~~~~ 275 (376)
T 2aja_A 213 NVINFLLDCPV--------MLAYAEIHEFEYGE-------KYVNPFIARHVNRLKEM--HDAFKLSNPDGVFDLVTKSEC 275 (376)
T ss_dssp HHHHHHTTSHH--------HHHHHHHCTTTTTT-------TTHHHHHHHHHHHHHHH--HTTTTTTSSSSCCCCSSHHHH
T ss_pred HHHHHHHhCCC--------ccchHHHHHHHCCC-------HHHHHHHHhcCcccccc--cHHHHHHHHCCChhhhcHHhh
Confidence 88888877543 26778888877773 55666666544332111 01111111 0
Q ss_pred HHHHHHHHHHHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcc----cccccCCCCchhHHHHHhCchHHHH
Q 008328 237 ELVKRLWEQVLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNL----IWKVDDHSRSMFHIAVVHRQEKIFN 312 (570)
Q Consensus 237 ~~~~~l~~~~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~iv~ 312 (570)
....+++..++ .+...+..+.+++|++.+..- .....+.+.||||+|+..|+.++++
T Consensus 276 ~~~~~~~~~li-------------------~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~ 336 (376)
T 2aja_A 276 LQGFYMLRNLI-------------------RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336 (376)
T ss_dssp HHHHHHHHHHH-------------------HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHH
T ss_pred hhhHHHHHHHH-------------------HcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHH
Confidence 00001111111 011123466777777633210 0122346789999999999999999
Q ss_pred HHHHhCchhhhhhhhcccCCCcHHHHhhhhCCCCc
Q 008328 313 LIYELGAHKDLIASYKDENNNNMLHLAGKLAPPDR 347 (570)
Q Consensus 313 ~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 347 (570)
+|++.| . .+|..|+||+.+|-+.|..+.
T Consensus 337 lLl~~~---~----v~~~~~~~~~~~~~~~~~~~~ 364 (376)
T 2aja_A 337 LLLSIP---S----VLALTKANNYYINETGGRLDL 364 (376)
T ss_dssp HHTTSH---H----HHHSCC---------------
T ss_pred HHHcCh---H----HHHHHHHhccccccccccccH
Confidence 999865 3 288999999999999887763
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1e-30 Score=235.03 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=153.3
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHH
Q 008328 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAA 96 (570)
Q Consensus 17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 96 (570)
+|.||||.||..|+.+++++|++.+ .+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCcCCCCCcHHHHHH
Confidence 5899999999999999999999874 567766 8999999999999999999999999 89999999999999999999
Q ss_pred HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHh
Q 008328 97 VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQ 176 (570)
Q Consensus 97 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 176 (570)
..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988 689999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcccc
Q 008328 177 HHPQLA 182 (570)
Q Consensus 177 ~~~~~~ 182 (570)
++.+..
T Consensus 157 ~~~~~~ 162 (167)
T 3v31_A 157 HLLKLL 162 (167)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 987764
No 59
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=9.1e-31 Score=234.79 Aligned_cols=161 Identities=25% Similarity=0.197 Sum_probs=149.5
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH
Q 008328 14 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC 93 (570)
Q Consensus 14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 93 (570)
.|.+|.||||.|++.|+.++++.|++..+...+.. +..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHh--cCCCCCccCCCCCCHHH
Confidence 47789999999999999999999998777666665 8889999999999999999999999 89999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328 94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 173 (570)
Q Consensus 94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 173 (570)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+|+|++ ++.+++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence 9999999999999999999988 699999999999999999999999999999999999999999999877 89999999
Q ss_pred HHhhCc
Q 008328 174 LIQHHP 179 (570)
Q Consensus 174 Ll~~~~ 179 (570)
|+++|+
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 998875
No 60
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.8e-30 Score=236.30 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=155.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328 16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 95 (570)
Q Consensus 16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 95 (570)
.++.+|||.||..|+.++++.|++..+.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCCHHHHH
Confidence 468899999999999999999999888888777 8999999999999999999999999 8999999999999999999
Q ss_pred HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHH
Q 008328 96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLI 175 (570)
Q Consensus 96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 175 (570)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 69999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCcccccccCCC
Q 008328 176 QHHPQLAMARDGN 188 (570)
Q Consensus 176 ~~~~~~~~~~d~~ 188 (570)
+.|+++. ..+..
T Consensus 159 ~~g~~~~-~~~~~ 170 (179)
T 3f6q_A 159 KMGQNLN-RIPYK 170 (179)
T ss_dssp HTTCCCS-CBCCC
T ss_pred HhhcCcc-cCCcc
Confidence 9999884 44433
No 61
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=1.1e-32 Score=278.92 Aligned_cols=270 Identities=14% Similarity=0.064 Sum_probs=182.1
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchh-hccCCCCCcHHHHHHhcCCHHHHHHHHHccCccc---ccccccCC
Q 008328 13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVC-VRISRNQDTALHIAAGARRTLFVQELVNLMTPED---LALRNKVG 88 (570)
Q Consensus 13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~-~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g 88 (570)
..+.+++||||.||+.|+.++|++|++.+..... ...+..|.||||+||+.|+.++|++|++ .|++ .+..+.+
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~- 163 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN- 163 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH-
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC-
Confidence 3466778999999999999999999986542111 1125578899999999999999999999 7864 2333333
Q ss_pred ChHHHHHHHcCcHHHHHHHHhcCCCCCC-cCCCCCCcHHHHHH-HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328 89 NTALCFAAVSGVTKIAEVMVNKNRELPS-IRGNKGATPLCMAA-LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG 166 (570)
Q Consensus 89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~TpLh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 166 (570)
.||||+|+..|+.+++++|+++|++++. ..|..|.||||+|+ .+|+.++|++|+++|+ .|.||||.|+.+|
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g 236 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCC
Confidence 9999999999999999999999998762 27788999999999 9999999999999874 3899999999999
Q ss_pred cHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCc-----hhhhhhhhhcCccchhccchhhhHHHHHHHHHH
Q 008328 167 LYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQ-----LGFWRRCIYSVPGMRAILDPKLMHLQALELVKR 241 (570)
Q Consensus 167 ~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~ 241 (570)
+.+++++|++++++.. ..| ++++.|+..|+.+..... ..+++.++..... . ..+.++.
T Consensus 237 ~~evv~lL~~~ga~~~-~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-------~-----~~~~~~~ 299 (376)
T 2aja_A 237 EKYVNPFIARHVNRLK-EMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-------V-----LLDDIRF 299 (376)
T ss_dssp TTTHHHHHHHHHHHHH-HHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-------G-----GHHHHHH
T ss_pred CHHHHHHHHhcCcccc-ccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-------h-----HHHHHHH
Confidence 9999999999998873 333 478888888864322110 0122333332210 0 1223333
Q ss_pred HHHH----HHhcCccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCCchhHHHHHhCchHHHHHHHHh
Q 008328 242 LWEQ----VLLLDDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSRSMFHIAVVHRQEKIFNLIYEL 317 (570)
Q Consensus 242 l~~~----~l~~~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 317 (570)
+++. .+...+.++ ..+.||||+|+..|+.+++++|++.+ ..+|..|+|++.+|-.+|+.++.+.-++.
T Consensus 300 Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 300 LLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp HHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----------------------
T ss_pred HHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHHHHHH
Confidence 3321 111123333 35679999999999999999999754 45688999999999999999998876543
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=3.8e-30 Score=229.95 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=147.6
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHH
Q 008328 16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFA 95 (570)
Q Consensus 16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 95 (570)
....||||.|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|++ .|++++.+|..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLL--RGANPDLKDRTGFAVIHDA 77 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHH--TTCCTTCCCTTSCCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC-CCCcccc-CccCccHHHHHHc-CcHHHHHHHHH--cCCCCCCCCCCCCCHHHHH
Confidence 3467999999999999999999975 5667766 8999999999999 99999999999 8999999999999999999
Q ss_pred HHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC-ccccccchhhHHHHHHHhCcHHHHHHH
Q 008328 96 AVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE-EDLKEEDRIELLVAVIDAGLYDVALDL 174 (570)
Q Consensus 96 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~L 174 (570)
+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 156 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 99999999999999999988 6899999999999999999999999999998 599999999999999999999999999
Q ss_pred HhhCcc
Q 008328 175 IQHHPQ 180 (570)
Q Consensus 175 l~~~~~ 180 (570)
+++|++
T Consensus 157 l~~GAd 162 (162)
T 1ihb_A 157 QANGAG 162 (162)
T ss_dssp HHTC--
T ss_pred HHhCCC
Confidence 999874
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=6.5e-30 Score=230.22 Aligned_cols=160 Identities=25% Similarity=0.231 Sum_probs=148.9
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH
Q 008328 14 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC 93 (570)
Q Consensus 14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 93 (570)
....+.||||.||+.|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLR 85 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHH
Confidence 345678999999999999999999986 5667776 8999999999999999999999999 89999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328 94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 173 (570)
Q Consensus 94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 173 (570)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence 9999999999999999999987 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhC
Q 008328 174 LIQHH 178 (570)
Q Consensus 174 Ll~~~ 178 (570)
|++.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 99865
No 64
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=254.17 Aligned_cols=188 Identities=16% Similarity=0.170 Sum_probs=169.5
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCcc-chhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcc-cccccccCCChHHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPE-AVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPE-DLALRNKVGNTALCFA 95 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~-~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~TpLh~A 95 (570)
+++++|.|+..|+.+.++.+++.... .++.+ |.+|+||||+|+..|+.+++++|++ .|+ +++.+|..|.||||+|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TSCCCTTCCCTTSCCHHHHG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCCCCCCCCCCHHHHH
Confidence 56789999999999999988875433 25555 8999999999999999999999999 787 9999999999999999
Q ss_pred H-----HcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHH
Q 008328 96 A-----VSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDV 170 (570)
Q Consensus 96 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 170 (570)
+ ..++.+++++|++.|.+.. ..+..|+||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 9 6789999999999998776 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hCcccccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhh
Q 008328 171 ALDLIQ-HHPQLAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIY 217 (570)
Q Consensus 171 ~~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~ 217 (570)
+++|++ .|+++ +.+|.+|+||||+|+..|+ .++++.|+.
T Consensus 232 v~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~-------~~iv~~Ll~ 271 (276)
T 4hbd_A 232 AGLLLAVPSCDI-SLTDRDGSTALMVALDAGQ-------SEIASMLYS 271 (276)
T ss_dssp HHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTC-------HHHHHHHHH
T ss_pred HHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCC-------HHHHHHHHh
Confidence 999999 78887 6899999999999999984 566666654
No 65
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.1e-32 Score=256.41 Aligned_cols=204 Identities=19% Similarity=0.123 Sum_probs=172.4
Q ss_pred cccCCccc---CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc
Q 008328 6 CLKGGVER---NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA 82 (570)
Q Consensus 6 ~~~~~~~~---~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 82 (570)
..+.+++. .+.+|.||||.||..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga~~n 81 (229)
T 2vge_A 6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLIT--AGANVN 81 (229)
T ss_dssp ----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTT
T ss_pred ccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCC
Confidence 34555544 456678999999999999999999986 4567776 8999999999999999999999999 899999
Q ss_pred ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH--HHcCCHHHHHHHhhccCCccccccchhhHHH
Q 008328 83 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA--ALLGHKEMIWYLYSVTKEEDLKEEDRIELLV 160 (570)
Q Consensus 83 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 160 (570)
.+|..|+||||+|+..|+.+++++|+++|++++...+..|+||||+| +..|+.+++++|+++|++++..+..|.++++
T Consensus 82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~ 161 (229)
T 2vge_A 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161 (229)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence 99999999999999999999999999999999854457999999999 9999999999999999999999999999998
Q ss_pred HHHHhCcHHHHHHHHhhCccc-ccccCCCCCcHHHHHHcCCCccccCCchhhhhh-hhhcCccch
Q 008328 161 AVIDAGLYDVALDLIQHHPQL-AMARDGNGETALHVLARKPSAFASGSQLGFWRR-CIYSVPGMR 223 (570)
Q Consensus 161 ~A~~~~~~~~~~~Ll~~~~~~-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 223 (570)
.++..+.. +.|++.|++. .+.+|.+|+||||+|++.|+ .++++. ++...|.++
T Consensus 162 ~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~-------~~~v~~~~l~~~p~~~ 216 (229)
T 2vge_A 162 DYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQ-------EGYVPRNYFGLFPRVK 216 (229)
T ss_dssp CBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTE-------EEEEEGGGEESSCCCC
T ss_pred HHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCC-------cceeehhhhhhCCCCC
Confidence 65554433 5778888874 36889999999999999985 566655 344445544
No 66
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.3e-29 Score=225.01 Aligned_cols=154 Identities=20% Similarity=0.239 Sum_probs=146.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 97 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 97 (570)
|.||||.||..|+.+.++.|++..+.+++.. |..|+||||+ +..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLK--QGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHH
Confidence 5799999999999999999998855567766 8999999999 99999999999999 899999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhh
Q 008328 98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQH 177 (570)
Q Consensus 98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 177 (570)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++ ++++.+|.+|.||||+|+..|+.+++++|+++
T Consensus 78 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999987 6899999999999999999999999999 99999999999999999999999999999875
No 67
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.4e-29 Score=233.20 Aligned_cols=161 Identities=20% Similarity=0.206 Sum_probs=150.6
Q ss_pred hhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCc
Q 008328 45 VCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT 124 (570)
Q Consensus 45 ~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~T 124 (570)
++.+ |..|+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|
T Consensus 28 ~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t 103 (192)
T 2rfm_A 28 RNYR-DSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKT 103 (192)
T ss_dssp HTCC-CTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCC
T ss_pred HhCc-CCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCc
Confidence 4445 8999999999999999999999999 799999999999999999999999999999999999987 68999999
Q ss_pred HHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccc
Q 008328 125 PLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFA 204 (570)
Q Consensus 125 pLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 204 (570)
|||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~--- 179 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGR--- 179 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTC---
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCc---
Confidence 999999999999999999999999999999999999999999999999999999998 6899999999999999984
Q ss_pred cCCchhhhhhhhh
Q 008328 205 SGSQLGFWRRCIY 217 (570)
Q Consensus 205 ~~~~~~~~~~l~~ 217 (570)
.++++.|+.
T Consensus 180 ----~~~v~~Ll~ 188 (192)
T 2rfm_A 180 ----QEVIKIFTE 188 (192)
T ss_dssp ----HHHHHHHHH
T ss_pred ----HHHHHHHHh
Confidence 566666553
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=247.94 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=156.7
Q ss_pred CcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHH-----hcCCHHHHHHHHHccCccccccc
Q 008328 10 GVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAA-----GARRTLFVQELVNLMTPEDLALR 84 (570)
Q Consensus 10 ~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~ 84 (570)
.+|..|.+|+||||+||..|+.++++.|++.+..+++.. |..|.||||+|+ ..++.++++.|++ .|.+.+..
T Consensus 103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~--~g~~~~~~ 179 (276)
T 4hbd_A 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALATLKTQDDIETVLQLFR--LGNINAKA 179 (276)
T ss_dssp HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGCCCCSHHHHHHHHHHHH--HSCTTCCC
T ss_pred cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHHHhhhhhhHHHHHHHHH--cCCCcccc
Confidence 488999999999999999999999999999866577777 999999999999 6789999999999 78999999
Q ss_pred ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhh-ccCCccccccchhhHHHHHH
Q 008328 85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYS-VTKEEDLKEEDRIELLVAVI 163 (570)
Q Consensus 85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~ 163 (570)
|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|.||||+|+
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~ 258 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHH
Confidence 9999999999999999999999999999988 699999999999999999999999999 89999999999999999999
Q ss_pred HhCcHHHHHHHHhhC
Q 008328 164 DAGLYDVALDLIQHH 178 (570)
Q Consensus 164 ~~~~~~~~~~Ll~~~ 178 (570)
..|+.+++++|+++.
T Consensus 259 ~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 259 DAGQSEIASMLYSRM 273 (276)
T ss_dssp HHTCHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHhcc
Confidence 999999999999875
No 69
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.6e-29 Score=228.37 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCccc-ccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPED-LALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~ 131 (570)
+.||||.|+..|+.++++.|++ .+.+ ++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLR--KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHT--TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHH--cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHH
Confidence 4567777777777777777776 3333 66666777777777777777777777777776665 466667777777777
Q ss_pred cCCHHHHHHHhhccCCccc
Q 008328 132 LGHKEMIWYLYSVTKEEDL 150 (570)
Q Consensus 132 ~g~~~~v~~Ll~~g~~~~~ 150 (570)
.|+.+++++|+++|++++.
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~ 97 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINI 97 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTC
T ss_pred CCCHHHHHHHHHcCCCCCC
Confidence 7776666666666555443
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.8e-32 Score=259.59 Aligned_cols=161 Identities=19% Similarity=0.094 Sum_probs=137.5
Q ss_pred HHHHhcCccch-hhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 008328 35 RNFFNLNPEAV-CVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRE 113 (570)
Q Consensus 35 ~~ll~~~~~~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 113 (570)
+.||++..... ....+.+|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 45666543221 11225678899999999999999999999 7999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc-cchhhHHHHH--HHhCcHHHHHHHHhhCcccccccCCCCC
Q 008328 114 LPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAV--IDAGLYDVALDLIQHHPQLAMARDGNGE 190 (570)
Q Consensus 114 ~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~d~~g~ 190 (570)
++ .+|..|.||||+|+..|+.+++++|+++|++++..+ .+|.||||+| +..|+.+++++|++.|+++ +.+|..|.
T Consensus 80 ~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~ 157 (229)
T 2vge_A 80 VN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAV 157 (229)
T ss_dssp TT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEE
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCch
Confidence 88 689999999999999999999999999999999987 6999999999 9999999999999999987 57888899
Q ss_pred cHHHHHHcC
Q 008328 191 TALHVLARK 199 (570)
Q Consensus 191 tpLh~A~~~ 199 (570)
||++.++..
T Consensus 158 ~~l~~~~~~ 166 (229)
T 2vge_A 158 YALWDYSAE 166 (229)
T ss_dssp EESSCBCCS
T ss_pred HHHHHHhhc
Confidence 999865554
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.7e-29 Score=222.24 Aligned_cols=151 Identities=23% Similarity=0.159 Sum_probs=142.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 97 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 97 (570)
..||||.|++.|+.+++++|++.+. +++ . |..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA-PFT-T-DWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC-CCC-C-CTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC-CCC-c-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHH
Confidence 4689999999999999999998754 333 3 7899999999999999999999999 899999999999999999999
Q ss_pred cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHH
Q 008328 98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDL 174 (570)
Q Consensus 98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 174 (570)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999988 6899999999999999999999999999999999999999999999999999999886
No 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.2e-29 Score=223.85 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=147.2
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328 51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130 (570)
Q Consensus 51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~ 130 (570)
....||||.|++.|+.+++++|++ .+.+++.+|..|+||||+|+. |+.+++++|+++|++++ .+|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH
Confidence 456799999999999999999999 899999999999999999999 99999999999999987 68999999999999
Q ss_pred HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchh
Q 008328 131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLG 210 (570)
Q Consensus 131 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 210 (570)
..|+.+++++|+++|++++.++.+|.||||+|+..|+.+++++|++++++..+.+|..|+||||+|+..++ .+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~-------~~ 151 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR-------NE 151 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC-------HH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC-------HH
Confidence 99999999999999999999999999999999999999999999999998667999999999999999984 67
Q ss_pred hhhhhhhcC
Q 008328 211 FWRRCIYSV 219 (570)
Q Consensus 211 ~~~~l~~~~ 219 (570)
+++.|+..+
T Consensus 152 ~~~~Ll~~G 160 (162)
T 1ihb_A 152 VVSLMQANG 160 (162)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 777776554
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3.8e-29 Score=224.70 Aligned_cols=156 Identities=12% Similarity=0.146 Sum_probs=146.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328 52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131 (570)
Q Consensus 52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~ 131 (570)
.|.||||.|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHH
Confidence 58999999999999999999999 789999999999999999999999999999999999987 689999999999999
Q ss_pred cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhh
Q 008328 132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGF 211 (570)
Q Consensus 132 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 211 (570)
.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..++ .++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~~~ 150 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGY-------RSV 150 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC-------HHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCc-------HHH
Confidence 99999999999999999999999999999999999999999999999998 6899999999999999884 555
Q ss_pred hhhhhhc
Q 008328 212 WRRCIYS 218 (570)
Q Consensus 212 ~~~l~~~ 218 (570)
++.|+..
T Consensus 151 ~~~L~~~ 157 (167)
T 3v31_A 151 QQVIESH 157 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.5e-28 Score=221.27 Aligned_cols=157 Identities=23% Similarity=0.250 Sum_probs=146.7
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
...+.||||.|++.|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHH
Confidence 5678899999999999999999999 899999999999999999999999999999999999987 6899999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
+..|+.+++++|+++|++++..+.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++ .
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~-------~ 159 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGN-------E 159 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC-------H
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCC-------H
Confidence 9999999999999999999999999999999999999999999999999998 6899999999999999984 5
Q ss_pred hhhhhhhh
Q 008328 210 GFWRRCIY 217 (570)
Q Consensus 210 ~~~~~l~~ 217 (570)
++++.|++
T Consensus 160 ~~~~~L~~ 167 (169)
T 2y1l_E 160 DLAEILQK 167 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66666654
No 75
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.5e-29 Score=241.52 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=74.6
Q ss_pred CChHHHHHHHcCcHHHHHHHHHhCCcccccccCCCC-chhHHH--HHhCchHHHHHHHHhCchhhhhhh-----hcccCC
Q 008328 261 PSRLLFTAVELGNVEFLMVLIQMYPNLIWKVDDHSR-SMFHIA--VVHRQEKIFNLIYELGAHKDLIAS-----YKDENN 332 (570)
Q Consensus 261 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~iv~~Ll~~g~~~~~~~n-----~~d~~G 332 (570)
|.||||+|+..|+.+++++|+++|+++ +.+|..|. ||||+| +..|+.+++++|++.|++++...+ ..|..|
T Consensus 103 g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~ 181 (239)
T 1ycs_B 103 GWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181 (239)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCC
Confidence 444444555556677777888888773 44455554 888888 677888888888888888764211 137889
Q ss_pred CcHHHHhhhhCCCCccccCCchhhhhhHhhhhHHHhhhhcCchhhhhhccCCCCcchhhhh
Q 008328 333 NNMLHLAGKLAPPDRLKIDSGAALQLRRELHWFKEIEKVVQPSYREAKNSEGRTPHILFSE 393 (570)
Q Consensus 333 ~TpLh~A~~~~~~~~~~~~~ga~~~~~~~l~~~~~~~~~~~~~~~~~~n~~G~Tpl~~a~~ 393 (570)
++|++++.+.|..-.+....+.+ +..|.+ ....++.|.+|..+...
T Consensus 182 ~~~~eLa~~~G~~i~vl~~~~~~-----~~~Ww~----------~~~~~~~G~~P~~yv~~ 227 (239)
T 1ycs_B 182 QNDDELPMKEGDCMTIIHREDED-----EIEWWW----------ARLNDKEGYVPRNLLGL 227 (239)
T ss_dssp SSTTBCCBCSSCEEEECCCCTTS-----CSSEEE----------EEETTEEEEEEGGGEEC
T ss_pred CCCCcccccCCCEEEEEEecCCC-----CCCEEE----------EEECCcEEEeehHHeeE
Confidence 99999999888754333322221 001211 13467789999988653
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.3e-29 Score=241.88 Aligned_cols=181 Identities=15% Similarity=0.067 Sum_probs=135.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHH
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCF 94 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 94 (570)
+..|.||||.|++.|+.+.++.++++ +.+++. +..|.||||.|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHH
Confidence 35799999999999999999999875 555654 5789999999999999999999999 899999999999999999
Q ss_pred HHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchh-hHHHHH--HHhCcHHHH
Q 008328 95 AAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRI-ELLVAV--IDAGLYDVA 171 (570)
Q Consensus 95 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A--~~~~~~~~~ 171 (570)
|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+| +..|+.+++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 999999999999999999988 6999999999999999999999999999999999998877 999999 788999999
Q ss_pred HHHHhhCccccc--------ccCCCCCcHHHHHHcCCC
Q 008328 172 LDLIQHHPQLAM--------ARDGNGETALHVLARKPS 201 (570)
Q Consensus 172 ~~Ll~~~~~~~~--------~~d~~g~tpLh~A~~~~~ 201 (570)
++|++++++... ..+..+.+|++++.+.|.
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999999887631 226778899998888774
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.9e-28 Score=215.58 Aligned_cols=144 Identities=21% Similarity=0.178 Sum_probs=137.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~ 132 (570)
..||||.|++.|+.+++++|++ .|.+++ .|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence 4689999999999999999999 678776 58899999999999999999999999999987 6899999999999999
Q ss_pred CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328 133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 201 (570)
Q Consensus 133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~ 201 (570)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999998 6899999999999999985
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.6e-28 Score=218.78 Aligned_cols=158 Identities=19% Similarity=0.191 Sum_probs=145.8
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|.+|.||||.|++.|+.++++.|++. .+.+++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHH
Confidence 67899999999999999999999986 577888899999999999999999999999999999987 6899999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCch
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQL 209 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 209 (570)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|++ + +.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~-------~~ 153 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-G-------DT 153 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-T-------CH
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-C-------Ch
Confidence 9999999999999999999999999999999999999999999999999998 6899999999999876 4 35
Q ss_pred hhhhhhhhc
Q 008328 210 GFWRRCIYS 218 (570)
Q Consensus 210 ~~~~~l~~~ 218 (570)
++++.|+..
T Consensus 154 ~i~~~L~~~ 162 (165)
T 3twr_A 154 DIQDLLRGD 162 (165)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 666666544
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=6.9e-28 Score=213.79 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=142.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHc
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALL 132 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~ 132 (570)
+.||||.|+..|+.++++.|++. .+.+++.+|..|.||||+ +..|+.+++++|+++|++++ .+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHc
Confidence 57999999999999999999995 466999999999999999 99999999999999999987 6999999999999999
Q ss_pred CCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCCccccCCchhhh
Q 008328 133 GHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPSAFASGSQLGFW 212 (570)
Q Consensus 133 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~ 212 (570)
|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++. +++ +.+|.+|.||||+|+..++ .+++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~-------~~~v 149 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGA-------QDLV 149 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCC-------HHHH
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCc-------HHHH
Confidence 999999999999999999999999999999999999999999999 776 6899999999999999984 5666
Q ss_pred hhhhh
Q 008328 213 RRCIY 217 (570)
Q Consensus 213 ~~l~~ 217 (570)
+.|++
T Consensus 150 ~~Ll~ 154 (156)
T 1bd8_A 150 DILQG 154 (156)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66553
No 80
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=6e-28 Score=219.53 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=137.5
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHH
Q 008328 51 RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAA 130 (570)
Q Consensus 51 ~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~ 130 (570)
.++.+|||.|++.|+.+++++|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHH
Confidence 5688999999999999999999995 578899999999999999999999999999999999988 68999999999999
Q ss_pred HcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328 131 LLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200 (570)
Q Consensus 131 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 200 (570)
..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~ 149 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPL 149 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 689999999999998765
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=1.8e-27 Score=205.94 Aligned_cols=134 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred cCCcccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccC
Q 008328 8 KGGVERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKV 87 (570)
Q Consensus 8 ~~~~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~ 87 (570)
+.+++..|.+|+||||+|+..|+.+++++|++. +.+++.+ |..|+||||+|+. |+.+++++|++ .|++++.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~ 76 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLL--HGAEPNCADPA 76 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHH--HTCCSSCCBTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHH--CCCCCCCcCCC
Confidence 457777788888888888888888888877765 4556665 7778888888888 88888888888 67888888887
Q ss_pred -CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328 88 -GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147 (570)
Q Consensus 88 -g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~ 147 (570)
|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7888888888888888888888888776 5777888888888888888888888887764
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=7.2e-28 Score=219.73 Aligned_cols=159 Identities=14% Similarity=0.044 Sum_probs=141.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCH----HHHHHHHHccCcccccccccCCChHH
Q 008328 17 TSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRT----LFVQELVNLMTPEDLALRNKVGNTAL 92 (570)
Q Consensus 17 ~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~TpL 92 (570)
+++++||.||+.|+.+.++.+++.+.. .+.+..|+||||+|+.+|+. +++++|++ .|+++|.+|.+|+|||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~---~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGYE---DKESVLKSNILYDVLRNNNDEARYKISMFLIN--KGADIKSRTKEGTTLF 79 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSSS---CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCCSSCCCTTCCCTH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCcc---cccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCCCCCCCCCCCcHH
Confidence 367899999999999999999876432 33136799999999999985 59999999 8999999999999999
Q ss_pred HHHHHcCc------HHHHHHHHhcCCCCCCcCCCCCC-cHHHHHHHcC-----CHHHHHHHhh-ccCCccccccchhhHH
Q 008328 93 CFAAVSGV------TKIAEVMVNKNRELPSIRGNKGA-TPLCMAALLG-----HKEMIWYLYS-VTKEEDLKEEDRIELL 159 (570)
Q Consensus 93 h~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~g~t~L 159 (570)
|+|+..|+ .+++++|+++|++++ .+|..|. ||||+|+..+ +.+++++|++ +|++++.+|..|.|||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 99999987 688999999999998 6999999 9999999954 4569999999 9999999999999999
Q ss_pred HHHHHhCcHHHHHHHHhhCccc
Q 008328 160 VAVIDAGLYDVALDLIQHHPQL 181 (570)
Q Consensus 160 ~~A~~~~~~~~~~~Ll~~~~~~ 181 (570)
|+|++.|+.+++++|.+.....
T Consensus 159 ~~A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999876544
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=3.3e-27 Score=209.49 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=98.4
Q ss_pred cccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCCh
Q 008328 11 VERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNT 90 (570)
Q Consensus 11 ~~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 90 (570)
.+..+..|.||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+ .|+.+++++|++ .|++++.+|..|.|
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~~~~~d~~g~t 79 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLT 79 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCC
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHH--cCCCCCCcCCCCCc
Confidence 445667778888888888888888877765 4556665 777888888874 788888888887 67888888888887
Q ss_pred -HHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHH
Q 008328 91 -ALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVA 161 (570)
Q Consensus 91 -pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 161 (570)
|||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+.
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 80 RPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEG 150 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccccc
Confidence 8888888888888888888888776 577788888888888888888888888888888777777777653
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3.9e-27 Score=203.78 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=126.3
Q ss_pred cchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCC-
Q 008328 43 EAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNK- 121 (570)
Q Consensus 43 ~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~- 121 (570)
.+++.+ |..|+||||+|++.|+.+++++|++ .|++++.+|..|+||||+|+. |+.+++++|+++|++++ .+|..
T Consensus 3 ~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~ 77 (136)
T 1d9s_A 3 PGIHML-GGSSDAGLATAAARGQVETVRQLLE--AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPAT 77 (136)
T ss_dssp CCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTT
T ss_pred CCccCC-CCCCccHHHHHHHcCCHHHHHHHHH--cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCC
Confidence 345555 8899999999999999999999999 899999999999999999999 99999999999999988 68888
Q ss_pred CCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328 122 GATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ 180 (570)
Q Consensus 122 g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 180 (570)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=6.5e-27 Score=207.54 Aligned_cols=142 Identities=18% Similarity=0.079 Sum_probs=120.8
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCc-HHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGAT-PLCM 128 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~T-pLh~ 128 (570)
+..|.||||+|++.|+.+++++|++ .|++++.+|..|+||||+|+ .|+.+++++|+++|++++ .+|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHH
Confidence 6789999999999999999999999 89999999999999999985 899999999999999988 69999999 9999
Q ss_pred HHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHH
Q 008328 129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVL 196 (570)
Q Consensus 129 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A 196 (570)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||.+-+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccccC
Confidence 99999999999999999999999999999999999999999999999999998 68999999998744
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.8e-25 Score=193.35 Aligned_cols=126 Identities=24% Similarity=0.256 Sum_probs=79.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
...+.||||+|++.|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence 3445666666666666666666666 566666666666666666666666666666666666655 4566666666666
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhC
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHH 178 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 178 (570)
+..|+.+++++|+++|++++..|.+|.||||+|+..|+.+++++|++.|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 6666666666666666666666666666666666666666666666543
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=3.8e-25 Score=188.15 Aligned_cols=125 Identities=27% Similarity=0.417 Sum_probs=72.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAV 97 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 97 (570)
|+||||.|++.|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCcHHHHHHH
Confidence 55666666666666666555554 2334333 5555666666666666666666665 555555555566666666666
Q ss_pred cCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC
Q 008328 98 SGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE 147 (570)
Q Consensus 98 ~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~ 147 (570)
.|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 78 ~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 666666666666655554 4555566666666666666666666555543
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=5.9e-25 Score=186.93 Aligned_cols=126 Identities=25% Similarity=0.347 Sum_probs=122.1
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328 52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131 (570)
Q Consensus 52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~ 131 (570)
+|+||||+|++.|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHH
Confidence 58999999999999999999999 799999999999999999999999999999999999987 689999999999999
Q ss_pred cCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcc
Q 008328 132 LGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQ 180 (570)
Q Consensus 132 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 180 (570)
.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999874
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=3.9e-25 Score=191.17 Aligned_cols=128 Identities=21% Similarity=0.193 Sum_probs=117.7
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHH
Q 008328 13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTAL 92 (570)
Q Consensus 13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 92 (570)
.....|.||||+||..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~t~L 84 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDAIGFTPL 84 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHH
Confidence 3456789999999999999999999986 5667776 8999999999999999999999999 8999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhcc
Q 008328 93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVT 145 (570)
Q Consensus 93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g 145 (570)
|+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999987 69999999999999999999999999876
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.2e-25 Score=205.06 Aligned_cols=143 Identities=15% Similarity=0.090 Sum_probs=129.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHHHHHHcCcH----HHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALCFAAVSGVT----KIAEVMVNKNRELPSIRGNKGATPLC 127 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~TpLh 127 (570)
+.++||.|++.|+.+.++.+++ . +++.++ ..|+||||+|+..|+. +++++|+++|++++ .+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~--~--~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE--K--GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH--H--SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHh--c--CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHH
Confidence 5689999999999999999988 3 355666 7899999999999975 59999999999998 69999999999
Q ss_pred HHHHcCC------HHHHHHHhhccCCccccccchh-hHHHHHHHh-----CcHHHHHHHHh-hCcccccccCCCCCcHHH
Q 008328 128 MAALLGH------KEMIWYLYSVTKEEDLKEEDRI-ELLVAVIDA-----GLYDVALDLIQ-HHPQLAMARDGNGETALH 194 (570)
Q Consensus 128 ~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~-----~~~~~~~~Ll~-~~~~~~~~~d~~g~tpLh 194 (570)
+|+..|+ .+++++|+++|++++.+|..|. ||||+|+.. ++.+++++|++ +|+++ +.+|..|+||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHH
Confidence 9999987 5889999999999999999999 999999994 44579999999 99998 699999999999
Q ss_pred HHHcCCC
Q 008328 195 VLARKPS 201 (570)
Q Consensus 195 ~A~~~~~ 201 (570)
+|++.++
T Consensus 160 ~A~~~~~ 166 (186)
T 3t8k_A 160 FVKRCQK 166 (186)
T ss_dssp HHHTTTC
T ss_pred HHHHcCC
Confidence 9999885
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=3.5e-25 Score=191.69 Aligned_cols=127 Identities=17% Similarity=0.110 Sum_probs=68.8
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHH
Q 008328 13 RNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTAL 92 (570)
Q Consensus 13 ~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 92 (570)
.+|.+|+||||+||..|+.+++++|++. +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQ--HKALVNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCcccCcCCCCCCHH
Confidence 4455555555555555555555555543 3334443 5555555555555555555555555 4555555555555555
Q ss_pred HHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhc
Q 008328 93 CFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSV 144 (570)
Q Consensus 93 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ 144 (570)
|+|+..|+.+++++|+++|++++ .+|..|.||||+|+..+..+++++|.+.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 55555555555555555555554 4555555555555555555555544443
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=1.1e-24 Score=198.53 Aligned_cols=140 Identities=24% Similarity=0.184 Sum_probs=127.4
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHH
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC 93 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh 93 (570)
|.+|+||||.||..|+.++++.|++ +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+| ..|+||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence 5678999999999999999999998 6677777 8999999999999999999999999 899999998 89999999
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328 94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 173 (570)
Q Consensus 94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 173 (570)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++. ..+.+++++|+..|+.++++.
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHH
Confidence 9999999999999999999988 6999999999999976543 345789999999999999999
Q ss_pred HHhh
Q 008328 174 LIQH 177 (570)
Q Consensus 174 Ll~~ 177 (570)
|.++
T Consensus 178 L~~~ 181 (183)
T 3deo_A 178 LEGQ 181 (183)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 9764
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=3.9e-25 Score=191.41 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=117.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A 83 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDA 83 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHHH
Confidence 8899999999999999999999999 899999999999999999999999999999999999987 6899999999999
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCc
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHP 179 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 179 (570)
+..|+.+++++|+++|++++.+|..|.||+|+|+..+..+++++|.+.+.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999988887776554
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=7.4e-26 Score=216.38 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=86.5
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328 52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131 (570)
Q Consensus 52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~ 131 (570)
.+.+++.+++..|+.+.+..+.. .+.++ +.+|.||||+|++.|+.++++.|++ |++++ .+|..|.||||+|+.
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~--~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~ 86 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSY--IAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAG 86 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGG--SCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHH
T ss_pred CCccHHHHHHHcCCCcccccccc--ccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHH
Confidence 34455555555555444433332 22222 3456666666666666666666666 66555 466666666666666
Q ss_pred cCCHHHHHHHhhccCCccccc-cchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcC
Q 008328 132 LGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199 (570)
Q Consensus 132 ~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 199 (570)
.|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus 87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~ 154 (244)
T 3ui2_A 87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREI 154 (244)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHH
Confidence 666666666666666666665 55666666666666666666666666665 46777888888887753
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=1.5e-25 Score=204.43 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=82.3
Q ss_pred ccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccc-cchhhHHHHHH
Q 008328 85 NKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKE-EDRIELLVAVI 163 (570)
Q Consensus 85 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~ 163 (570)
|.+|.||||+|+..|+.++++.|++ |++++ .+|..|.||||+|+..|+.+++++|+++|++++.++ .+|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4566777777777777777777777 66665 467777777777777777777777777777777666 66777777777
Q ss_pred HhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCC
Q 008328 164 DAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKP 200 (570)
Q Consensus 164 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~ 200 (570)
..|+.+++++|+++|+++ +.+|.+|+||||+|++.+
T Consensus 119 ~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREIL 154 (183)
T ss_dssp HTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhc
Confidence 777777777777777776 577888888888887643
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=1.6e-24 Score=207.16 Aligned_cols=143 Identities=23% Similarity=0.170 Sum_probs=130.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccc-cCCChHHH
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRN-KVGNTALC 93 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh 93 (570)
+.+|+||||.||+.|+.++++.|++ +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+| ..|.||||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSCCCHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCcCCCCCCCCHHH
Confidence 4578999999999999999999998 5678777 8999999999999999999999999 899999998 88999999
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHH
Q 008328 94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALD 173 (570)
Q Consensus 94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 173 (570)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++ ...+.||||+|+..|+.+++++
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHH
Confidence 9999999999999999999988 699999999999986432 2467899999999999999999
Q ss_pred HHhhCcc
Q 008328 174 LIQHHPQ 180 (570)
Q Consensus 174 Ll~~~~~ 180 (570)
|++.+.+
T Consensus 179 L~~~~~~ 185 (244)
T 3ui2_A 179 LEGQVFE 185 (244)
T ss_dssp HHHHHEE
T ss_pred HHHhccc
Confidence 9997554
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=4.4e-24 Score=181.06 Aligned_cols=112 Identities=22% Similarity=0.219 Sum_probs=75.2
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
+..|+||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH--cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHH
Confidence 4456677777777777777777776 566666666677777777777777777777777766665 4666677777777
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhHHHHHHH
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID 164 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 164 (570)
+..|+.+++++|+++|++++.+|.+|.||+|+|..
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 77777777777777777666666666666666643
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=206.62 Aligned_cols=139 Identities=17% Similarity=0.084 Sum_probs=125.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCcccccc------cccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCC
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPEDLAL------RNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGA 123 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~------~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~ 123 (570)
+.++||.|+..|+.+.++.|++ .+++++. +|..|.||||+|+.. |+.+++++|+++|++++ .+|..|.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHh--cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCC
Confidence 3467999999999999999999 8999988 699999999999997 89999999999999988 6899999
Q ss_pred cHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328 124 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARKPS 201 (570)
Q Consensus 124 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~ 201 (570)
||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++++++ .|.||||+|+..|+
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999998875 58999999999875
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=3.5e-24 Score=201.80 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=88.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhc-CCCCCCcCCCCCCcHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNK-NRELPSIRGNKGATPLCM 128 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~TpLh~ 128 (570)
+.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++ |++++ .+|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLD--NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHh--CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHH
Confidence 5567777777777777777777777 6777777777777777777777777777777776 66665 567777777777
Q ss_pred HHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccc
Q 008328 129 AALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181 (570)
Q Consensus 129 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 181 (570)
|+..|+.+++++|+++|++++.++.+|.||||+|+..++.++++.|++.++..
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 77777777777777777777777777777777777777777777777776654
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=5.5e-24 Score=200.38 Aligned_cols=140 Identities=21% Similarity=0.221 Sum_probs=114.0
Q ss_pred ccCCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChH
Q 008328 12 ERNCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTA 91 (570)
Q Consensus 12 ~~~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 91 (570)
+..|.+|.||||+||..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++. .|++++.+|..|+||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tp 143 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTA 143 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCH
T ss_pred cccccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCH
Confidence 34566789999999999999999999985 5667776 89999999999999999999999993 399999999999999
Q ss_pred HHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccch
Q 008328 92 LCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDR 155 (570)
Q Consensus 92 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 155 (570)
||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.|++.+..+.++
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 999999999999999999999987 799999999999999999999999999999877665543
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=1e-23 Score=207.58 Aligned_cols=143 Identities=17% Similarity=0.080 Sum_probs=122.9
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCccchhhc-----cCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccccccC
Q 008328 16 FTSYAPLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKV 87 (570)
Q Consensus 16 ~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~ 87 (570)
..+.++||.|+..|+.+.++.+++. +.+++.. .+..|+||||+|+.. |+.+++++|++ .|++++.+|.+
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadvn~~d~~ 225 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAAD 225 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSCTTCCCTT
T ss_pred CchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCCCCCCCCC
Confidence 3456789999999999999999965 4555552 378999999999997 89999999999 79999999999
Q ss_pred CChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCc
Q 008328 88 GNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGL 167 (570)
Q Consensus 88 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 167 (570)
|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|+..|+
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 9999999999999999999999999988 7999999999999999999999999999986 57899999999886
Q ss_pred H
Q 008328 168 Y 168 (570)
Q Consensus 168 ~ 168 (570)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 4
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=2.2e-23 Score=176.76 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=104.6
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHH
Q 008328 14 NCFTSYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALC 93 (570)
Q Consensus 14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 93 (570)
.+..|.||||.|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLL 78 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHT--TTCCTTCCCTTSCCHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHH
Confidence 356789999999999999999999986 4567776 8999999999999999999999999 89999999999999999
Q ss_pred HHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHH
Q 008328 94 FAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKE 136 (570)
Q Consensus 94 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~ 136 (570)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..+..+
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCCHHHHH
Confidence 9999999999999999999987 69999999999995444333
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=2.4e-21 Score=188.39 Aligned_cols=165 Identities=19% Similarity=0.091 Sum_probs=138.8
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCc-------c---ch-------h--hc---cC-------CCCCcHHHHHHhcC
Q 008328 14 NCFTSYAPLHLAALKGDWDFARNFFNLNP-------E---AV-------C--VR---IS-------RNQDTALHIAAGAR 64 (570)
Q Consensus 14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~~~-------~---~~-------~--~~---~~-------~~g~TpLh~A~~~g 64 (570)
.|..+.++|+.+...|+....+.+...-+ . .. . .. .. ....++||.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 57889999999999999876654421110 0 00 0 00 00 11236899999999
Q ss_pred CHHHHHHHHHccCccc------ccccccCCChHHHHHHHc---CcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCH
Q 008328 65 RTLFVQELVNLMTPED------LALRNKVGNTALCFAAVS---GVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHK 135 (570)
Q Consensus 65 ~~~~v~~Ll~~~~~~~------~~~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~ 135 (570)
+.+.++.+++ .|.+ ++..|..|.||||+|+.. |+.+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus 142 d~~~~~~ll~--~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 142 DIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp CHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTTCH
T ss_pred ccHHHHHHHH--hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence 9999999999 7887 445589999999999999 89999999999999988 6999999999999999999
Q ss_pred HHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCccc
Q 008328 136 EMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQL 181 (570)
Q Consensus 136 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 181 (570)
+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++++++.
T Consensus 219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999998743
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=7.6e-22 Score=158.17 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=77.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHH
Q 008328 52 NQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAAL 131 (570)
Q Consensus 52 ~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~ 131 (570)
+|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence 47888888888888888888888 788888888888888888888888888888888888877 578888888888888
Q ss_pred cCCHHHHHHHhhccCC
Q 008328 132 LGHKEMIWYLYSVTKE 147 (570)
Q Consensus 132 ~g~~~~v~~Ll~~g~~ 147 (570)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 8888888888888764
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=1.9e-21 Score=195.72 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHhc-CCHHHHHHHHHccCcccccccc--cCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHH
Q 008328 51 RNQDTALHIAAGA-RRTLFVQELVNLMTPEDLALRN--KVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLC 127 (570)
Q Consensus 51 ~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh 127 (570)
..+.||||.|+.. |+.++++.|++ .|++++..| ..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~--~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh 273 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLH 273 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHH--TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHH--cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHH
Confidence 3455666666666 66666666666 566666666 566666666666666666666666666665 46666666666
Q ss_pred HHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccc--cccCCCCCcHHHHHHc
Q 008328 128 MAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLA--MARDGNGETALHVLAR 198 (570)
Q Consensus 128 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~--~~~d~~g~tpLh~A~~ 198 (570)
+|+..|+.+++++|+++|++++..|.+|.||||+|+..++.+++++|++.+.... ...+..+.|+++.+..
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 6666666666666666666666666666666666666666666666665543221 1334556666665544
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=1.8e-21 Score=195.96 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=116.0
Q ss_pred ccCCCCCChHHHHHHHc-CCHHHHHHHHhcCccchhhccC--CCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCC
Q 008328 12 ERNCFTSYAPLHLAALK-GDWDFARNFFNLNPEAVCVRIS--RNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVG 88 (570)
Q Consensus 12 ~~~d~~g~t~Lh~Aa~~-g~~~~v~~ll~~~~~~~~~~~~--~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g 88 (570)
+..+..+.|+||.|+.. |+.++++.|++. +.+++.. + ..|.||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gadvn~~d~~G 268 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANSLLACEFLLQ--NGANVNQADSAG 268 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTS
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCC
Confidence 33455567899999999 999999999875 5667766 5 789999999999999999999999 899999999999
Q ss_pred ChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC---CccccccchhhHHHHHHH
Q 008328 89 NTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK---EEDLKEEDRIELLVAVID 164 (570)
Q Consensus 89 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~ 164 (570)
+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.+. +....+..+.|+++.+..
T Consensus 269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 269 RGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred CCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 999999999999999999999999987 799999999999999999999999998774 334455667777776544
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=2.9e-21 Score=204.09 Aligned_cols=137 Identities=18% Similarity=0.105 Sum_probs=118.1
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCccccccc------ccCCChHHHHHHH---cCcHHHHHHHHhcCCCCCCcCCCCCC
Q 008328 53 QDTALHIAAGARRTLFVQELVNLMTPEDLALR------NKVGNTALCFAAV---SGVTKIAEVMVNKNRELPSIRGNKGA 123 (570)
Q Consensus 53 g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~ 123 (570)
..+.||.|+..|+.+.++.|++ .|++++.+ |..|.||||+|++ .|+.+++++|+++|++++ .+|..|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~--~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn-~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHH--TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT-CCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHh--hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC-ccCCCCC
Confidence 4478999999999999999999 89999987 8899999999976 899999999999999998 6999999
Q ss_pred cHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhCcHHHHHHHHhhCcccccccCCCCCcHHHHHHcC
Q 008328 124 TPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAGLYDVALDLIQHHPQLAMARDGNGETALHVLARK 199 (570)
Q Consensus 124 TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 199 (570)
||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++.. . +|+|.+...
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-~------~~~h~~~~~ 277 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF-A------FPLHVDYSW 277 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-C------Ccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999873 2 688877653
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=2.2e-21 Score=188.70 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=115.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccc-----hhhccCCCCCcHHHHHHhc---CCHHHHHHHHHccCcccccccccCCC
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEA-----VCVRISRNQDTALHIAAGA---RRTLFVQELVNLMTPEDLALRNKVGN 89 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~-----~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~ 89 (570)
..++|+.|+..|+.+.++.+++.+... ++.. |..|+||||+|+.. |+.+++++|++ .|++++.+|..|+
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~-~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~in~~d~~g~ 206 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANG-HEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSC-SSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTCC
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhcccccc-ccCCCCcchHHHHhcccchHHHHHHHHH--CCCCccccCCCCC
Confidence 468999999999999999988764432 2222 78899999999999 89999999999 7999999999999
Q ss_pred hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCc
Q 008328 90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEE 148 (570)
Q Consensus 90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~ 148 (570)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999988 79999999999999999999999999999863
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=3.9e-21 Score=203.11 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=115.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhc-----cCCCCCcHHHHHHh---cCCHHHHHHHHHccCcccccccccCCC
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVR-----ISRNQDTALHIAAG---ARRTLFVQELVNLMTPEDLALRNKVGN 89 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~-----~~~~g~TpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 89 (570)
..+.||.|+..|+.+.++.||+.+ .+++.+ .|..|+||||+||+ .|+.+++++|++ .|+++|.+|.+|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~--~ga~vn~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHH--HSCCTTCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHH--cCCCCCccCCCCC
Confidence 447899999999999999999864 555433 26789999999976 999999999999 8999999999999
Q ss_pred hHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHH
Q 008328 90 TALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVID 164 (570)
Q Consensus 90 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 164 (570)
||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 99999999999999999999999988 6999999999999999999999999999999876 56776543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=1.6e-21 Score=163.08 Aligned_cols=106 Identities=27% Similarity=0.367 Sum_probs=88.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|.+|+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~A 82 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLA 82 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHH
Confidence 7788888888888888888888888 788888888888888888888888888888888888876 5788888888888
Q ss_pred HHcCCHHHHHHHhhccCCccccccchhhH
Q 008328 130 ALLGHKEMIWYLYSVTKEEDLKEEDRIEL 158 (570)
Q Consensus 130 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 158 (570)
+..|+.+++++|+++|++++.++..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 88888888888888888888777777665
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.3e-20 Score=150.92 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=88.4
Q ss_pred CCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHHHHhC
Q 008328 87 VGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAVIDAG 166 (570)
Q Consensus 87 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 166 (570)
+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 58999999999999999999999999988 69999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCcc
Q 008328 167 LYDVALDLIQHHPQ 180 (570)
Q Consensus 167 ~~~~~~~Ll~~~~~ 180 (570)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 99999999999864
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=2.5e-20 Score=155.70 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=102.0
Q ss_pred ccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhHHHHH
Q 008328 83 LRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIELLVAV 162 (570)
Q Consensus 83 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 162 (570)
.+|.+|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 478999999999999999999999999999987 6899999999999999999999999999999999999999999999
Q ss_pred HHhCcHHHHHHHHhhCcccccccCCCCCcHH
Q 008328 163 IDAGLYDVALDLIQHHPQLAMARDGNGETAL 193 (570)
Q Consensus 163 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL 193 (570)
+..++.+++++|+++|+++ +.++..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 9999999999999999998 68899998873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=2.3e-18 Score=142.47 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=74.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMA 129 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A 129 (570)
|.+|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A 97 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDIS 97 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHHHHH
Confidence 7788888888888888888888888 788888888888888888888888888888888888876 5788888888888
Q ss_pred HHcCCHHHHHHH
Q 008328 130 ALLGHKEMIWYL 141 (570)
Q Consensus 130 ~~~g~~~~v~~L 141 (570)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 888888888776
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=1.3e-17 Score=137.96 Aligned_cols=95 Identities=21% Similarity=0.206 Sum_probs=85.4
Q ss_pred ccccccccCCChHHHHHHHcCcHHHHHHHHhcCCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCCccccccchhhH
Q 008328 79 EDLALRNKVGNTALCFAAVSGVTKIAEVMVNKNRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKEEDLKEEDRIEL 158 (570)
Q Consensus 79 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 158 (570)
..+...|.+|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 3455678899999999999999999999999999988 689999999999999999999999999999999999999999
Q ss_pred HHHHHHhCcHHHHHHH
Q 008328 159 LVAVIDAGLYDVALDL 174 (570)
Q Consensus 159 L~~A~~~~~~~~~~~L 174 (570)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999876
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=70.61 E-value=17 Score=35.35 Aligned_cols=185 Identities=11% Similarity=0.000 Sum_probs=96.2
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhc-CccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc-ccccCCChHH
Q 008328 15 CFTSYAPLHLAALKGDWDFARNFFNL-NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA-LRNKVGNTAL 92 (570)
Q Consensus 15 d~~g~t~Lh~Aa~~g~~~~v~~ll~~-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpL 92 (570)
|.+|.-.|......++.+..+.+++. .+.....-.|..|+..+--....|+.+....+++...|.-+. ..|..|.-.+
T Consensus 34 dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvv 113 (351)
T 3gvo_A 34 DQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVI 113 (351)
T ss_dssp SHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHH
T ss_pred CCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHH
Confidence 44555566666666766665555442 122222223777777777777777777766666644443222 3566677777
Q ss_pred HHHHHcCcHHHHHHHHhcC-CC-CCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccCC---ccccccchhhHHHHHHHhCc
Q 008328 93 CFAAVSGVTKIAEVMVNKN-RE-LPSIRGNKGATPLCMAALLGHKEMIWYLYSVTKE---EDLKEEDRIELLVAVIDAGL 167 (570)
Q Consensus 93 h~A~~~g~~~iv~~Ll~~~-~~-~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~ 167 (570)
..+......+-...+++.= +. .....|..|...+......+..+..+.+++.-.. .-..+..|...+..+.....
T Consensus 114 Qk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~ 193 (351)
T 3gvo_A 114 QKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCT 193 (351)
T ss_dssp HHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC
Confidence 7666666555444444321 11 1113566666666666655554443444332111 11234455555555555444
Q ss_pred HH----HHHHHHhhCcccccccCCCCCcHHHHHHcCCC
Q 008328 168 YD----VALDLIQHHPQLAMARDGNGETALHVLARKPS 201 (570)
Q Consensus 168 ~~----~~~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~ 201 (570)
.+ +++.|..+-..+ ..|.+|+-.+......+.
T Consensus 194 ~~~~~~ii~~l~~~~~~L--~~d~~Gn~ViQ~~l~~~~ 229 (351)
T 3gvo_A 194 AEQTLPILEELHQHTEQL--VQDQYGNYVIQHVLEHGR 229 (351)
T ss_dssp HHHHHHHHHHHHTTHHHH--HTSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhHHhc--CCCchHHHHHHHHHHhCc
Confidence 32 333333322222 467777777777666553
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=50.18 E-value=45 Score=32.17 Aligned_cols=292 Identities=11% Similarity=0.038 Sum_probs=155.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCcccc-cccccCCChHHHHHH
Q 008328 18 SYAPLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDL-ALRNKVGNTALCFAA 96 (570)
Q Consensus 18 g~t~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~TpLh~A~ 96 (570)
|++||..-.+.+...-. .|-+-.+.......|..|.-.|......++.+-.+.+.+...+.-+ -..|..|+..+.-..
T Consensus 3 ~~~~l~e~~r~~~~~~~-~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQkll 81 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNL-QLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFF 81 (351)
T ss_dssp CCCHHHHHHHTTCCTTC-CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHH
T ss_pred CccHHHHHHhCCCCCCc-CHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHH
Confidence 55666666555532111 0111122222222366676677777777777766666654333222 257889999999999
Q ss_pred HcCcHHHHHHHHhc--CCCCCCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC---CccccccchhhHHHHHHHhCcHHHH
Q 008328 97 VSGVTKIAEVMVNK--NRELPSIRGNKGATPLCMAALLGHKEMIWYLYSVTK---EEDLKEEDRIELLVAVIDAGLYDVA 171 (570)
Q Consensus 97 ~~g~~~iv~~Ll~~--~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~ 171 (570)
..++.+....+++. |.-..-..+..|.-.+..+......+-...+++.-. ..-..|..|+..+..+...+..+..
T Consensus 82 e~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~ 161 (351)
T 3gvo_A 82 EFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSL 161 (351)
T ss_dssp HHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGT
T ss_pred hhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHH
Confidence 99988877766653 221122478889888888888877765555554311 1123577888888888887766555
Q ss_pred HHHHhhCcc--cccccCCCCCcHHHHHHcCCCccccCCchhhhhhhhhcCccchhccchhhhHHHHHHHHHHHHHHHHhc
Q 008328 172 LDLIQHHPQ--LAMARDGNGETALHVLARKPSAFASGSQLGFWRRCIYSVPGMRAILDPKLMHLQALELVKRLWEQVLLL 249 (570)
Q Consensus 172 ~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lh~~~~~~~~~l~~~~l~~ 249 (570)
+.+++.-.. ..-..+..|...+.........+. ...+++.+..
T Consensus 162 ~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~---~~~ii~~l~~-------------------------------- 206 (351)
T 3gvo_A 162 QFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQ---TLPILEELHQ-------------------------------- 206 (351)
T ss_dssp HHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHH---HHHHHHHHHT--------------------------------
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHH---HHHHHHHHhh--------------------------------
Confidence 555544221 112456778777766665432100 0111111110
Q ss_pred CccchhhhccCCChHHHHHHHcCcHHHHHHHHHhCCc--ccccccCCCCchhHHHHHhCchH----HHHHHHHh--Cchh
Q 008328 250 DDSKIGELLRKPSRLLFTAVELGNVEFLMVLIQMYPN--LIWKVDDHSRSMFHIAVVHRQEK----IFNLIYEL--GAHK 321 (570)
Q Consensus 250 ~~~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~A~~~~~~~----iv~~Ll~~--g~~~ 321 (570)
....=..|..|+..+....+.+..+.-+.+++.-.. ..-..++.|...+.-+...+..+ +++.++.. |...
T Consensus 207 -~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~ 285 (351)
T 3gvo_A 207 -HTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHS 285 (351)
T ss_dssp -THHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEE
T ss_pred -hHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCCh
Confidence 111112345566666666666665555555543211 11224556666666666555443 33333321 1100
Q ss_pred hhhhhhcccCCCcHHHHhhhhCCCC
Q 008328 322 DLIASYKDENNNNMLHLAGKLAPPD 346 (570)
Q Consensus 322 ~~~~n~~d~~G~TpLh~A~~~~~~~ 346 (570)
.+..=.+|..|+-.+..+...+.++
T Consensus 286 ~l~~l~~d~ygnyViq~~L~~~~~~ 310 (351)
T 3gvo_A 286 ALYTMMKDQYANYVVQKMIDMAEPA 310 (351)
T ss_dssp HHHHHHHSTTHHHHHHHHHHHCCHH
T ss_pred HHHHccCCcchHHHHHHHHHhCCHH
Confidence 1101146777777777776655443
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=43.47 E-value=45 Score=32.48 Aligned_cols=189 Identities=8% Similarity=-0.028 Sum_probs=113.5
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhc-CccchhhccCCCCCcHHHHHHhcCCHHHHHHHHHccCccccc-ccccCCChH
Q 008328 14 NCFTSYAPLHLAALKGDWDFARNFFNL-NPEAVCVRISRNQDTALHIAAGARRTLFVQELVNLMTPEDLA-LRNKVGNTA 91 (570)
Q Consensus 14 ~d~~g~t~Lh~Aa~~g~~~~v~~ll~~-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~Tp 91 (570)
.|.+|.-.+..+...++.+..+.+++. .+.......|..|+..+--....+..+..+.+++...|.-.. ..+..|.-.
T Consensus 38 ~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rV 117 (369)
T 3k49_A 38 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRV 117 (369)
T ss_dssp TSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHH
T ss_pred cCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHH
Confidence 456677778888888887776666553 222233333888998888888888888777777754443322 356677777
Q ss_pred HHHHHHcCcHHHHHHHHhc-CCCC-CCcCCCCCCcHHHHHHHcCCHHHHHHHhhccC---CccccccchhhHHHHHHHhC
Q 008328 92 LCFAAVSGVTKIAEVMVNK-NREL-PSIRGNKGATPLCMAALLGHKEMIWYLYSVTK---EEDLKEEDRIELLVAVIDAG 166 (570)
Q Consensus 92 Lh~A~~~g~~~iv~~Ll~~-~~~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~ 166 (570)
+..+......+-...+++. .+.. ....|.+|...+......+..+..+.+++.-. -.-..+..|...+..+...+
T Consensus 118 lQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~ 197 (369)
T 3k49_A 118 IQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFG 197 (369)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhC
Confidence 7777766665544444432 1111 11367777777777766665443333332111 01124567777777777777
Q ss_pred cHHHHHHHHhhCcc--cccccCCCCCcHHHHHHcCCCc
Q 008328 167 LYDVALDLIQHHPQ--LAMARDGNGETALHVLARKPSA 202 (570)
Q Consensus 167 ~~~~~~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~ 202 (570)
..+--+.+++.-.+ ..-..|..|+-.+..+...+..
T Consensus 198 ~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~ 235 (369)
T 3k49_A 198 SSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQF 235 (369)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCc
Confidence 76555555543211 1125688888888888877653
No 118
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=38.47 E-value=1.6e+02 Score=28.50 Aligned_cols=149 Identities=9% Similarity=0.006 Sum_probs=85.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCcccc-cccccCCChHHHHHHHcCcHHHHHHHHhcCC-CC-CCcCCCCCCcHH
Q 008328 50 SRNQDTALHIAAGARRTLFVQELVNLMTPEDL-ALRNKVGNTALCFAAVSGVTKIAEVMVNKNR-EL-PSIRGNKGATPL 126 (570)
Q Consensus 50 ~~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~-~~-~~~~~~~g~TpL 126 (570)
|..|.-.+.-+...+..+-.+.+.+...+.-+ -.+|..|+..+......+..+..+.+++.-. .+ .-..+..|.-.+
T Consensus 39 d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVl 118 (369)
T 3k49_A 39 DQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVI 118 (369)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHH
T ss_pred CCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHH
Confidence 55555666666666666655555554333222 2468889888888888888776666665421 11 113577788777
Q ss_pred HHHHHcCCHHHHHHHhhccC---CccccccchhhHHHHHHHhCcHHHHHHHHh----hCcccccccCCCCCcHHHHHHcC
Q 008328 127 CMAALLGHKEMIWYLYSVTK---EEDLKEEDRIELLVAVIDAGLYDVALDLIQ----HHPQLAMARDGNGETALHVLARK 199 (570)
Q Consensus 127 h~A~~~g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~ 199 (570)
.-+......+-...+++.-. ..-..|..|+..+..+...+..+..+.+++ +-..+ ..+..|...+......
T Consensus 119 Qk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~l--s~~~~Gs~Vvq~~l~~ 196 (369)
T 3k49_A 119 QKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHL--STHSYGCRVIQRLLEF 196 (369)
T ss_dssp HHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHH--HTSTTHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHH--hCCCccCcHHHHHHHh
Confidence 77777766554444443211 112357778777777777665433333332 22222 4566676666666555
Q ss_pred C
Q 008328 200 P 200 (570)
Q Consensus 200 ~ 200 (570)
+
T Consensus 197 ~ 197 (369)
T 3k49_A 197 G 197 (369)
T ss_dssp S
T ss_pred C
Confidence 4
No 119
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.01 E-value=67 Score=32.75 Aligned_cols=146 Identities=13% Similarity=0.048 Sum_probs=78.1
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccchhhccCCCCCcHHHHHHhc-CC-------------HHHHHHHHHccCccccccccc
Q 008328 21 PLHLAALKGDWDFARNFFNLNPEAVCVRISRNQDTALHIAAGA-RR-------------TLFVQELVNLMTPEDLALRNK 86 (570)
Q Consensus 21 ~Lh~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~g~TpLh~A~~~-g~-------------~~~v~~Ll~~~~~~~~~~~d~ 86 (570)
.|...|+.|+.+.+..+++.-... ..+.|..-.+.|-.|+.. +. .++.+.+.+ .|..+|...
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~--~G~~Pd~~t- 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV--DKVVPNEAT- 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--TTCCCCHHH-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--hCCCCCHHH-
Confidence 366677889988877776541110 001022223444445432 21 234444444 455444322
Q ss_pred CCChHHHHHHHcCcHHHHHHHH----hcCCCCCCcCCCCCCc-HHHHHHHcCCHHHHHH----HhhccCCccccccchhh
Q 008328 87 VGNTALCFAAVSGVTKIAEVMV----NKNRELPSIRGNKGAT-PLCMAALLGHKEMIWY----LYSVTKEEDLKEEDRIE 157 (570)
Q Consensus 87 ~g~TpLh~A~~~g~~~iv~~Ll----~~~~~~~~~~~~~g~T-pLh~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t 157 (570)
-++.+...++.|+.+-+..++ +.|..+ |..-.+ .+...++.|+.+-+.. +.+.|..++.. .-.+
T Consensus 108 -yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~--ty~~ 180 (501)
T 4g26_A 108 -FTNGARLAVAKDDPEMAFDMVKQMKAFGIQP----RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP--ELAA 180 (501)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH--HHHH
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH--HHHH
Confidence 234566677888876655544 444332 222233 4445567788665544 44566655432 2346
Q ss_pred HHHHHHHhCcHHHHHHHHhh
Q 008328 158 LLVAVIDAGLYDVALDLIQH 177 (570)
Q Consensus 158 ~L~~A~~~~~~~~~~~Ll~~ 177 (570)
.+...++.|+.+-+..+++.
T Consensus 181 Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHH
Confidence 67788888998877777765
No 120
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=25.96 E-value=1.6e+02 Score=25.37 Aligned_cols=23 Identities=13% Similarity=0.401 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 008328 495 GLATLFISIATMMAAFAATLFIV 517 (570)
Q Consensus 495 ~~~~~~~s~~~m~~af~~~~~~v 517 (570)
+...+.+.+.++++=|...+-++
T Consensus 52 a~~qilVYvGAi~VLflFvvMl~ 74 (184)
T 3rko_J 52 GALEIIVYAGAIMVLFVFVVMML 74 (184)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444555555565555444
No 121
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=21.84 E-value=62 Score=19.67 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=11.9
Q ss_pred HHHHHHHcCCHHHHHHH
Q 008328 21 PLHLAALKGDWDFARNF 37 (570)
Q Consensus 21 ~Lh~Aa~~g~~~~v~~l 37 (570)
-+..||..|+.+.++.|
T Consensus 16 qiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 35677888888877643
No 122
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.61 E-value=64 Score=31.29 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008328 497 ATLFISIATMMAAFAATLFIV 517 (570)
Q Consensus 497 ~~~~~s~~~m~~af~~~~~~v 517 (570)
.+..+|+++|...|++|+|=+
T Consensus 305 ~LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcc
Confidence 356788888999999999854
Done!