Query 008329
Match_columns 570
No_of_seqs 337 out of 3398
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 22:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 4E-53 8.8E-58 443.3 28.5 356 207-566 78-473 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 8.4E-51 1.8E-55 413.5 19.5 282 262-566 46-332 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 3.6E-38 7.9E-43 338.6 22.6 279 265-565 59-342 (412)
4 TIGR00382 clpX endopeptidase C 100.0 5.7E-37 1.2E-41 328.7 22.5 281 264-566 64-349 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 2.1E-31 4.5E-36 284.1 17.8 224 266-566 1-364 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 4.9E-31 1.1E-35 281.4 17.4 225 265-566 3-366 (443)
7 COG1220 HslU ATP-dependent pro 100.0 1.1E-27 2.3E-32 246.4 16.5 224 265-565 3-366 (444)
8 COG1222 RPT1 ATP-dependent 26S 99.9 5.9E-26 1.3E-30 235.5 14.2 213 278-553 152-369 (406)
9 KOG0738 AAA+-type ATPase [Post 99.9 2.4E-23 5.2E-28 217.5 14.3 170 278-494 213-386 (491)
10 KOG0730 AAA+-type ATPase [Post 99.9 1.4E-23 3E-28 230.8 13.0 225 278-565 435-663 (693)
11 KOG0739 AAA+-type ATPase [Post 99.9 6E-23 1.3E-27 208.7 15.2 168 278-494 134-303 (439)
12 KOG0734 AAA+-type ATPase conta 99.9 7.1E-23 1.5E-27 220.1 15.1 226 264-553 291-518 (752)
13 COG0542 clpA ATP-binding subun 99.9 6.5E-23 1.4E-27 232.1 14.9 224 254-553 464-705 (786)
14 KOG0733 Nuclear AAA ATPase (VC 99.9 7.8E-23 1.7E-27 222.6 12.5 215 278-553 512-730 (802)
15 KOG0736 Peroxisome assembly fa 99.9 9.9E-23 2.1E-27 226.2 12.7 217 278-553 673-892 (953)
16 KOG0733 Nuclear AAA ATPase (VC 99.9 2.3E-21 4.9E-26 211.3 13.3 173 278-494 191-365 (802)
17 KOG0731 AAA+-type ATPase conta 99.8 4.1E-21 8.8E-26 216.4 13.4 172 277-494 311-486 (774)
18 COG1223 Predicted ATPase (AAA+ 99.8 3.8E-21 8.3E-26 192.8 11.5 168 277-494 121-288 (368)
19 PRK11034 clpA ATP-dependent Cl 99.8 1.3E-20 2.8E-25 216.0 17.0 232 255-565 432-679 (758)
20 COG0465 HflB ATP-dependent Zn 99.8 1.1E-20 2.4E-25 209.4 11.2 214 278-553 151-367 (596)
21 KOG0727 26S proteasome regulat 99.8 2.2E-20 4.7E-25 186.7 11.8 173 278-496 156-332 (408)
22 TIGR02639 ClpA ATP-dependent C 99.8 1.7E-19 3.7E-24 207.1 17.6 219 256-553 429-662 (731)
23 CHL00095 clpC Clp protease ATP 99.8 5E-19 1.1E-23 205.6 19.1 232 255-553 483-732 (821)
24 PF07724 AAA_2: AAA domain (Cd 99.8 9.4E-20 2E-24 174.8 10.3 164 331-534 4-171 (171)
25 PF05496 RuvB_N: Holliday junc 99.8 4E-19 8.7E-24 176.5 14.1 170 274-553 22-192 (233)
26 KOG0728 26S proteasome regulat 99.8 1.5E-19 3.2E-24 180.6 9.3 171 277-494 147-322 (404)
27 KOG0735 AAA+-type ATPase [Post 99.8 6.8E-19 1.5E-23 194.5 14.3 168 278-494 668-839 (952)
28 CHL00181 cbbX CbbX; Provisiona 99.8 1.8E-18 3.9E-23 178.6 15.5 192 264-553 10-209 (287)
29 TIGR01241 FtsH_fam ATP-depende 99.8 1.9E-18 4.1E-23 190.3 15.9 173 274-494 53-229 (495)
30 COG0464 SpoVK ATPases of the A 99.8 1.5E-18 3.2E-23 190.8 14.7 214 278-553 243-459 (494)
31 TIGR01243 CDC48 AAA family ATP 99.8 1.9E-18 4.2E-23 198.5 15.5 169 278-494 454-626 (733)
32 CHL00195 ycf46 Ycf46; Provisio 99.8 3.9E-18 8.5E-23 187.4 16.1 210 278-553 229-441 (489)
33 KOG0729 26S proteasome regulat 99.8 9.3E-19 2E-23 176.2 10.2 170 277-494 177-352 (435)
34 TIGR02880 cbbX_cfxQ probable R 99.8 4.4E-18 9.6E-23 175.3 15.5 192 264-553 9-208 (284)
35 PTZ00454 26S protease regulato 99.8 3.4E-18 7.4E-23 183.8 15.2 213 278-553 146-363 (398)
36 KOG0652 26S proteasome regulat 99.8 2E-18 4.2E-23 173.4 11.9 170 278-494 172-346 (424)
37 TIGR02881 spore_V_K stage V sp 99.8 1.2E-17 2.7E-22 169.3 17.1 182 273-553 3-191 (261)
38 TIGR03345 VI_ClpV1 type VI sec 99.8 7.2E-18 1.6E-22 196.2 16.8 223 255-553 540-780 (852)
39 PRK03992 proteasome-activating 99.7 1.2E-17 2.5E-22 179.2 15.1 168 278-494 132-306 (389)
40 KOG0726 26S proteasome regulat 99.7 1.6E-18 3.5E-23 176.2 7.9 211 277-553 185-403 (440)
41 PLN00020 ribulose bisphosphate 99.7 7.3E-18 1.6E-22 177.7 11.6 151 330-494 148-302 (413)
42 PTZ00361 26 proteosome regulat 99.7 2.2E-17 4.7E-22 179.3 14.2 171 278-494 184-358 (438)
43 CHL00176 ftsH cell division pr 99.7 2.9E-17 6.2E-22 185.7 13.9 172 278-494 184-357 (638)
44 TIGR03689 pup_AAA proteasome A 99.7 6.6E-17 1.4E-21 178.1 15.9 173 278-494 183-369 (512)
45 COG2255 RuvB Holliday junction 99.7 8.2E-17 1.8E-21 163.6 14.4 171 274-553 24-194 (332)
46 TIGR03346 chaperone_ClpB ATP-d 99.7 2.9E-16 6.2E-21 183.4 18.9 220 255-553 539-776 (852)
47 TIGR00763 lon ATP-dependent pr 99.7 3E-16 6.5E-21 181.5 17.4 167 255-471 300-474 (775)
48 COG0466 Lon ATP-dependent Lon 99.7 1.8E-16 3.8E-21 176.6 14.6 178 254-481 302-488 (782)
49 KOG0737 AAA+-type ATPase [Post 99.7 1.9E-16 4.1E-21 165.7 13.7 185 264-494 80-265 (386)
50 PRK10733 hflB ATP-dependent me 99.7 3.5E-16 7.7E-21 177.6 16.4 225 267-553 143-369 (644)
51 PRK10865 protein disaggregatio 99.7 7.1E-16 1.5E-20 179.9 18.4 220 255-553 542-779 (857)
52 KOG0740 AAA+-type ATPase [Post 99.7 1.5E-16 3.1E-21 170.8 11.6 171 277-494 153-324 (428)
53 KOG1051 Chaperone HSP104 and r 99.7 6.6E-16 1.4E-20 177.6 17.7 232 253-553 534-784 (898)
54 KOG2004 Mitochondrial ATP-depe 99.7 5.5E-16 1.2E-20 172.0 15.9 228 254-553 390-626 (906)
55 COG2256 MGS1 ATPase related to 99.7 3.7E-16 8.1E-21 165.0 13.0 127 331-552 49-175 (436)
56 TIGR01242 26Sp45 26S proteasom 99.7 4.9E-16 1.1E-20 164.9 14.1 168 278-494 123-297 (364)
57 KOG0651 26S proteasome regulat 99.6 3.9E-16 8.5E-21 160.1 10.0 172 278-493 133-306 (388)
58 PRK10787 DNA-binding ATP-depen 99.6 4.6E-15 9.9E-20 171.5 18.7 198 254-553 301-506 (784)
59 PF00004 AAA: ATPase family as 99.6 3.3E-15 7.2E-20 133.1 9.7 130 333-488 1-131 (132)
60 CHL00206 ycf2 Ycf2; Provisiona 99.6 3.4E-15 7.3E-20 179.4 12.4 136 329-494 1629-1808(2281)
61 KOG0732 AAA+-type ATPase conta 99.6 3.5E-15 7.5E-20 172.8 9.9 170 278-494 266-442 (1080)
62 TIGR02639 ClpA ATP-dependent C 99.6 2.1E-14 4.6E-19 165.3 13.4 118 274-434 180-308 (731)
63 TIGR01243 CDC48 AAA family ATP 99.6 4E-14 8.8E-19 163.0 15.4 167 279-494 180-350 (733)
64 KOG0730 AAA+-type ATPase [Post 99.5 1.2E-14 2.6E-19 160.9 9.4 168 278-494 185-355 (693)
65 KOG0741 AAA+-type ATPase [Post 99.5 8.9E-15 1.9E-19 158.2 7.1 142 331-494 257-405 (744)
66 COG0714 MoxR-like ATPases [Gen 99.5 1.8E-13 3.8E-18 143.5 14.9 169 267-492 14-193 (329)
67 TIGR00635 ruvB Holliday juncti 99.5 5.5E-13 1.2E-17 137.2 16.6 104 279-437 6-109 (305)
68 TIGR02640 gas_vesic_GvpN gas v 99.5 6.2E-13 1.3E-17 135.4 15.6 121 331-470 22-161 (262)
69 PRK00080 ruvB Holliday junctio 99.5 8.5E-13 1.8E-17 138.2 17.0 105 279-438 27-131 (328)
70 PF01078 Mg_chelatase: Magnesi 99.5 2E-13 4.2E-18 134.7 10.9 174 278-544 4-206 (206)
71 KOG0744 AAA+-type ATPase [Post 99.5 2.7E-13 5.8E-18 140.1 12.0 142 330-494 177-331 (423)
72 TIGR03345 VI_ClpV1 type VI sec 99.5 3.5E-13 7.5E-18 157.4 14.2 177 278-568 188-376 (852)
73 PRK14956 DNA polymerase III su 99.5 5.5E-13 1.2E-17 145.9 13.7 105 278-435 19-147 (484)
74 TIGR01650 PD_CobS cobaltochela 99.5 3.2E-13 7E-18 141.5 11.4 160 331-551 65-231 (327)
75 PRK13342 recombination factor 99.4 7.3E-13 1.6E-17 143.1 14.2 82 331-435 37-118 (413)
76 PF00158 Sigma54_activat: Sigm 99.4 7.9E-13 1.7E-17 126.7 12.9 146 279-487 1-160 (168)
77 PRK07003 DNA polymerase III su 99.4 5.3E-13 1.1E-17 151.6 13.4 105 278-435 17-145 (830)
78 PRK12323 DNA polymerase III su 99.4 4.1E-13 8.9E-18 150.7 11.7 128 278-479 17-174 (700)
79 KOG0989 Replication factor C, 99.4 1.8E-12 3.9E-17 133.4 14.7 174 274-531 34-216 (346)
80 PRK14962 DNA polymerase III su 99.4 1.4E-12 3.1E-17 143.3 13.9 105 278-435 15-143 (472)
81 KOG2028 ATPase related to the 99.4 1E-12 2.2E-17 137.5 11.4 127 331-552 163-293 (554)
82 PRK07994 DNA polymerase III su 99.4 1.7E-12 3.7E-17 146.8 14.1 105 278-435 17-145 (647)
83 PRK10865 protein disaggregatio 99.4 1.9E-12 4.1E-17 151.5 14.8 132 274-471 176-318 (857)
84 PRK14949 DNA polymerase III su 99.4 2.1E-12 4.5E-17 149.0 14.8 105 278-435 17-145 (944)
85 PLN03025 replication factor C 99.4 1.2E-12 2.6E-17 136.7 11.8 105 279-434 15-124 (319)
86 PRK11034 clpA ATP-dependent Cl 99.4 1.4E-12 3.1E-17 150.2 13.1 177 278-568 187-375 (758)
87 PF07726 AAA_3: ATPase family 99.4 1E-13 2.2E-18 127.2 3.0 112 332-470 1-113 (131)
88 KOG0991 Replication factor C, 99.4 1.1E-12 2.4E-17 130.7 10.2 156 278-517 28-189 (333)
89 PRK07940 DNA polymerase III su 99.4 3E-12 6.5E-17 137.9 13.9 150 279-493 7-179 (394)
90 PRK14958 DNA polymerase III su 99.4 2.1E-12 4.5E-17 143.2 12.6 105 278-435 17-145 (509)
91 PRK14960 DNA polymerase III su 99.4 3E-12 6.5E-17 144.1 13.3 105 278-435 16-144 (702)
92 PRK07764 DNA polymerase III su 99.4 5.6E-12 1.2E-16 146.4 14.4 105 278-435 16-146 (824)
93 PRK14961 DNA polymerase III su 99.4 7.3E-12 1.6E-16 133.3 14.0 105 278-435 17-145 (363)
94 CHL00095 clpC Clp protease ATP 99.3 5.3E-12 1.2E-16 147.3 13.6 128 278-471 180-318 (821)
95 PF07728 AAA_5: AAA domain (dy 99.3 8.3E-13 1.8E-17 120.6 5.4 124 332-471 1-125 (139)
96 PRK13407 bchI magnesium chelat 99.3 9.7E-12 2.1E-16 131.3 13.0 139 278-470 9-181 (334)
97 TIGR03346 chaperone_ClpB ATP-d 99.3 9.9E-12 2.1E-16 145.6 14.3 168 278-556 174-353 (852)
98 PRK13531 regulatory ATPase Rav 99.3 1.6E-11 3.6E-16 134.3 14.7 123 268-440 11-138 (498)
99 CHL00081 chlI Mg-protoporyphyr 99.3 1.3E-11 2.7E-16 131.0 13.1 134 278-470 18-197 (350)
100 PRK06645 DNA polymerase III su 99.3 1.4E-11 3E-16 136.5 13.7 105 278-435 22-154 (507)
101 PRK14964 DNA polymerase III su 99.3 1.2E-11 2.5E-16 136.4 12.9 105 278-435 14-142 (491)
102 PRK14957 DNA polymerase III su 99.3 1.5E-11 3.3E-16 137.1 14.0 105 278-435 17-145 (546)
103 PRK14952 DNA polymerase III su 99.3 1.5E-11 3.2E-16 138.3 13.8 105 278-435 14-144 (584)
104 KOG0743 AAA+-type ATPase [Post 99.3 2.3E-11 4.9E-16 130.8 13.7 174 331-551 236-415 (457)
105 PRK14959 DNA polymerase III su 99.3 1.7E-11 3.7E-16 137.9 13.4 105 278-435 17-145 (624)
106 PRK14951 DNA polymerase III su 99.3 1.7E-11 3.6E-16 138.5 13.1 105 278-435 17-150 (618)
107 TIGR02902 spore_lonB ATP-depen 99.3 1.8E-11 4E-16 136.5 13.3 116 278-440 66-206 (531)
108 PRK13341 recombination factor 99.3 2.3E-11 4.9E-16 139.8 14.2 82 331-435 53-135 (725)
109 COG3604 FhlA Transcriptional r 99.3 8.2E-12 1.8E-16 135.3 9.4 151 278-488 224-385 (550)
110 smart00350 MCM minichromosome 99.3 2.1E-11 4.6E-16 135.3 12.9 201 270-550 196-397 (509)
111 PRK14969 DNA polymerase III su 99.3 1.6E-11 3.5E-16 136.8 11.7 105 278-435 17-145 (527)
112 TIGR02030 BchI-ChlI magnesium 99.3 2.5E-11 5.4E-16 128.3 12.4 138 278-469 5-183 (337)
113 KOG0742 AAA+-type ATPase [Post 99.3 2.7E-11 5.9E-16 128.4 12.0 134 331-494 385-519 (630)
114 PRK08691 DNA polymerase III su 99.3 2.3E-11 5E-16 137.9 12.3 105 278-435 17-145 (709)
115 COG3829 RocR Transcriptional r 99.3 1.1E-11 2.5E-16 135.6 9.1 152 278-489 246-409 (560)
116 COG2204 AtoC Response regulato 99.3 8.1E-12 1.7E-16 136.1 7.9 154 276-489 140-304 (464)
117 PRK14963 DNA polymerase III su 99.3 5.5E-11 1.2E-15 131.9 14.3 105 278-435 15-142 (504)
118 COG0542 clpA ATP-binding subun 99.2 4.3E-11 9.2E-16 136.8 13.3 185 269-568 163-359 (786)
119 COG0606 Predicted ATPase with 99.2 2.1E-11 4.5E-16 132.1 9.6 182 278-546 180-385 (490)
120 PRK07133 DNA polymerase III su 99.2 7E-11 1.5E-15 134.8 14.3 110 278-435 19-144 (725)
121 PRK14965 DNA polymerase III su 99.2 4.1E-11 9E-16 134.9 12.2 105 278-435 17-145 (576)
122 PRK05563 DNA polymerase III su 99.2 7.5E-11 1.6E-15 132.3 13.8 105 278-435 17-145 (559)
123 TIGR02442 Cob-chelat-sub cobal 99.2 7E-11 1.5E-15 134.4 13.8 137 278-469 5-178 (633)
124 PRK05896 DNA polymerase III su 99.2 8.2E-11 1.8E-15 132.0 13.2 105 278-435 17-145 (605)
125 PRK14955 DNA polymerase III su 99.2 6.6E-11 1.4E-15 127.5 12.1 111 278-435 17-153 (397)
126 TIGR00368 Mg chelatase-related 99.2 9.3E-11 2E-15 129.8 13.2 184 278-546 193-397 (499)
127 PRK04195 replication factor C 99.2 1.3E-10 2.8E-15 128.2 14.1 110 279-434 16-127 (482)
128 PRK14948 DNA polymerase III su 99.2 1.4E-10 3E-15 131.6 14.5 105 278-435 17-147 (620)
129 TIGR02397 dnaX_nterm DNA polym 99.2 1.5E-10 3.1E-15 121.4 12.9 105 278-435 15-143 (355)
130 PRK06305 DNA polymerase III su 99.2 2.3E-10 5E-15 125.4 14.6 105 278-435 18-147 (451)
131 PRK09111 DNA polymerase III su 99.2 1.9E-10 4E-15 129.9 13.9 110 278-435 25-158 (598)
132 PHA02544 44 clamp loader, smal 99.2 2.2E-10 4.8E-15 118.6 13.2 141 278-493 22-163 (316)
133 TIGR02974 phageshock_pspF psp 99.2 1.4E-10 3.1E-15 122.1 11.7 150 279-484 1-157 (329)
134 PRK08451 DNA polymerase III su 99.2 2.8E-10 6.1E-15 126.6 14.0 105 278-435 15-143 (535)
135 PRK12402 replication factor C 99.1 4E-10 8.7E-15 116.9 13.5 111 278-434 16-150 (337)
136 PRK06647 DNA polymerase III su 99.1 3.2E-10 7E-15 127.3 13.6 105 278-435 17-145 (563)
137 PRK14953 DNA polymerase III su 99.1 3.2E-10 6.9E-15 125.3 13.1 105 278-435 17-145 (486)
138 PTZ00111 DNA replication licen 99.1 3.3E-10 7.1E-15 131.3 13.4 204 271-551 444-654 (915)
139 PRK14954 DNA polymerase III su 99.1 4.9E-10 1.1E-14 126.9 14.5 113 278-435 17-153 (620)
140 TIGR02903 spore_lon_C ATP-depe 99.1 5.7E-10 1.2E-14 126.6 14.7 117 278-440 155-296 (615)
141 COG2812 DnaX DNA polymerase II 99.1 1.6E-10 3.5E-15 127.6 9.9 137 277-479 16-169 (515)
142 PRK14950 DNA polymerase III su 99.1 5E-10 1.1E-14 126.4 13.7 105 278-435 17-146 (585)
143 PRK14970 DNA polymerase III su 99.1 8.6E-10 1.9E-14 117.1 14.5 110 278-435 18-134 (367)
144 TIGR01817 nifA Nif-specific re 99.1 8.7E-10 1.9E-14 122.9 14.7 145 278-485 197-355 (534)
145 COG1221 PspF Transcriptional r 99.1 3.6E-10 7.9E-15 121.4 10.3 142 276-478 77-231 (403)
146 PRK11608 pspF phage shock prot 99.1 1.8E-09 3.9E-14 113.6 15.1 146 278-483 7-163 (326)
147 PRK07471 DNA polymerase III su 99.1 1.8E-09 4E-14 115.4 14.9 110 278-435 20-167 (365)
148 PRK15424 propionate catabolism 99.1 6.5E-10 1.4E-14 124.1 11.7 149 278-486 220-388 (538)
149 PRK14971 DNA polymerase III su 99.1 1.6E-09 3.4E-14 122.9 14.2 105 278-435 18-147 (614)
150 TIGR02928 orc1/cdc6 family rep 99.0 1.7E-09 3.6E-14 114.0 13.3 62 278-367 16-86 (365)
151 PRK09112 DNA polymerase III su 99.0 2.8E-09 6.1E-14 113.5 14.9 48 278-356 24-71 (351)
152 cd00009 AAA The AAA+ (ATPases 99.0 1.6E-09 3.5E-14 95.8 11.0 88 331-435 20-110 (151)
153 PHA02244 ATPase-like protein 99.0 2.1E-09 4.5E-14 114.6 13.2 111 331-469 120-230 (383)
154 PRK05564 DNA polymerase III su 99.0 3.4E-09 7.4E-14 110.4 14.5 107 278-435 5-119 (313)
155 PRK00440 rfc replication facto 99.0 2.2E-09 4.8E-14 110.4 12.7 104 279-434 19-127 (319)
156 PRK08058 DNA polymerase III su 99.0 2.7E-09 5.9E-14 112.4 13.1 112 279-435 7-136 (329)
157 PRK07399 DNA polymerase III su 99.0 4.2E-09 9E-14 110.5 14.3 113 278-435 5-150 (314)
158 TIGR00678 holB DNA polymerase 99.0 3.2E-09 7E-14 102.3 12.0 84 331-435 15-122 (188)
159 PRK00411 cdc6 cell division co 99.0 7.8E-09 1.7E-13 110.2 16.1 61 278-366 31-96 (394)
160 PRK05022 anaerobic nitric oxid 99.0 1.3E-09 2.8E-14 121.1 10.3 150 278-487 188-348 (509)
161 COG0470 HolB ATPase involved i 99.0 2.8E-09 6.1E-14 109.6 12.0 118 332-490 26-168 (325)
162 TIGR02329 propionate_PrpR prop 99.0 2.2E-09 4.8E-14 119.7 11.9 148 278-485 213-372 (526)
163 PRK09862 putative ATP-dependen 99.0 1.8E-09 3.9E-14 119.7 10.8 164 331-546 211-394 (506)
164 PF13177 DNA_pol3_delta2: DNA 99.0 4.9E-09 1.1E-13 99.7 12.0 105 281-435 1-128 (162)
165 PF05673 DUF815: Protein of un 99.0 1.1E-08 2.4E-13 103.5 15.1 175 279-553 29-207 (249)
166 TIGR02031 BchD-ChlD magnesium 99.0 2.7E-09 5.8E-14 120.6 11.2 117 331-470 17-137 (589)
167 TIGR03420 DnaA_homol_Hda DnaA 99.0 7E-09 1.5E-13 101.8 12.6 76 331-434 39-117 (226)
168 COG1239 ChlI Mg-chelatase subu 98.9 6.4E-09 1.4E-13 111.5 12.1 143 274-470 14-197 (423)
169 PRK11388 DNA-binding transcrip 98.9 6.7E-09 1.4E-13 118.2 12.5 147 278-487 326-483 (638)
170 PRK08084 DNA replication initi 98.9 9.7E-09 2.1E-13 103.2 11.8 25 331-355 46-70 (235)
171 PRK10820 DNA-binding transcrip 98.9 1.1E-08 2.3E-13 114.2 13.0 147 278-487 205-365 (520)
172 KOG1969 DNA replication checkp 98.9 1.3E-08 2.8E-13 114.6 13.0 200 270-493 264-471 (877)
173 PRK05707 DNA polymerase III su 98.9 1.7E-08 3.6E-13 106.7 12.8 86 331-435 23-132 (328)
174 PTZ00112 origin recognition co 98.9 2.7E-08 5.8E-13 114.7 14.6 114 277-434 755-894 (1164)
175 PRK08903 DnaA regulatory inact 98.8 1.1E-08 2.4E-13 101.2 9.9 70 331-434 43-115 (227)
176 PRK15429 formate hydrogenlyase 98.8 9.9E-09 2.1E-13 117.9 10.8 149 278-486 377-536 (686)
177 PF06068 TIP49: TIP49 C-termin 98.8 3E-08 6.4E-13 105.4 13.0 63 278-367 25-89 (398)
178 smart00382 AAA ATPases associa 98.8 1.8E-08 3.9E-13 87.9 9.2 76 331-410 3-93 (148)
179 PRK08727 hypothetical protein; 98.8 3.9E-08 8.5E-13 98.7 12.5 76 331-434 42-120 (233)
180 PF14532 Sigma54_activ_2: Sigm 98.8 2.3E-09 5E-14 98.7 3.3 96 331-481 22-120 (138)
181 TIGR00764 lon_rel lon-related 98.8 2.7E-08 5.9E-13 112.9 12.2 50 274-357 15-64 (608)
182 PRK11331 5-methylcytosine-spec 98.8 5.1E-08 1.1E-12 106.4 13.7 135 331-483 195-352 (459)
183 smart00763 AAA_PrkA PrkA AAA d 98.8 6.1E-08 1.3E-12 103.2 13.9 62 276-363 50-118 (361)
184 PRK00149 dnaA chromosomal repl 98.8 2.6E-08 5.7E-13 109.0 11.1 85 331-434 149-238 (450)
185 PF00493 MCM: MCM2/3/5 family 98.8 5.7E-09 1.2E-13 110.2 4.8 200 271-551 18-218 (331)
186 COG1224 TIP49 DNA helicase TIP 98.8 1.1E-07 2.4E-12 100.1 13.8 61 279-366 41-103 (450)
187 PRK06893 DNA replication initi 98.8 5.4E-08 1.2E-12 97.4 11.2 76 331-434 40-118 (229)
188 TIGR00362 DnaA chromosomal rep 98.7 4E-08 8.7E-13 106.0 10.8 85 331-434 137-226 (405)
189 PRK06871 DNA polymerase III su 98.7 1.5E-07 3.2E-12 99.4 14.5 85 331-435 25-133 (325)
190 PRK14086 dnaA chromosomal repl 98.7 2.2E-07 4.8E-12 104.9 15.9 85 331-434 315-404 (617)
191 PRK08769 DNA polymerase III su 98.7 2.1E-07 4.5E-12 98.0 14.5 87 331-435 27-139 (319)
192 PRK10923 glnG nitrogen regulat 98.7 8.7E-08 1.9E-12 104.7 11.8 122 331-485 162-297 (469)
193 KOG0480 DNA replication licens 98.7 4.9E-08 1.1E-12 108.5 9.6 158 270-470 338-495 (764)
194 PRK05642 DNA replication initi 98.7 1.2E-07 2.5E-12 95.4 10.8 76 331-434 46-124 (234)
195 COG3283 TyrR Transcriptional r 98.7 1.3E-07 2.8E-12 99.7 10.9 126 330-488 227-361 (511)
196 KOG0478 DNA replication licens 98.7 7E-08 1.5E-12 108.0 9.3 197 274-553 426-625 (804)
197 COG1474 CDC6 Cdc6-related prot 98.6 3.4E-07 7.4E-12 98.1 14.2 62 279-368 19-85 (366)
198 KOG0735 AAA+-type ATPase [Post 98.6 8.1E-08 1.8E-12 107.9 9.7 146 325-494 426-577 (952)
199 COG1241 MCM2 Predicted ATPase 98.6 5.7E-08 1.2E-12 110.5 8.6 200 271-551 280-480 (682)
200 PRK13406 bchD magnesium chelat 98.6 8.5E-08 1.8E-12 108.3 9.9 97 331-442 26-126 (584)
201 PRK06964 DNA polymerase III su 98.6 2.1E-07 4.4E-12 99.0 12.0 26 331-356 22-47 (342)
202 KOG2170 ATPase of the AAA+ sup 98.6 4.4E-07 9.6E-12 93.9 14.0 148 266-471 71-226 (344)
203 COG2607 Predicted ATPase (AAA+ 98.6 5.2E-07 1.1E-11 91.0 13.8 173 278-551 61-237 (287)
204 PRK15115 response regulator Gl 98.6 1.9E-07 4.1E-12 101.2 11.8 124 331-487 158-295 (444)
205 PRK11361 acetoacetate metaboli 98.6 1E-07 2.3E-12 103.4 9.1 123 331-486 167-303 (457)
206 PF00308 Bac_DnaA: Bacterial d 98.6 2.1E-07 4.6E-12 92.8 10.4 82 331-434 35-124 (219)
207 PRK14088 dnaA chromosomal repl 98.6 2.2E-07 4.8E-12 101.8 11.3 86 331-434 131-221 (440)
208 TIGR02915 PEP_resp_reg putativ 98.6 3E-07 6.6E-12 99.7 12.2 121 331-484 163-297 (445)
209 PRK04132 replication factor C 98.6 1.8E-07 3.8E-12 109.1 10.9 100 329-471 563-671 (846)
210 PRK06090 DNA polymerase III su 98.6 8.8E-07 1.9E-11 93.3 14.9 120 331-492 26-169 (319)
211 TIGR01818 ntrC nitrogen regula 98.6 2.9E-07 6.3E-12 100.2 11.6 127 331-483 158-291 (463)
212 PRK07993 DNA polymerase III su 98.6 6.9E-07 1.5E-11 94.7 13.8 121 331-493 25-170 (334)
213 PRK12422 chromosomal replicati 98.6 2.1E-07 4.6E-12 102.1 9.6 85 331-434 142-229 (445)
214 PRK13765 ATP-dependent proteas 98.5 3.6E-07 7.7E-12 104.2 11.1 45 277-355 31-75 (637)
215 PRK14087 dnaA chromosomal repl 98.5 6.9E-07 1.5E-11 98.2 11.2 87 331-434 142-233 (450)
216 COG3284 AcoR Transcriptional a 98.5 2.6E-07 5.6E-12 103.3 7.7 133 329-488 335-474 (606)
217 PRK12377 putative replication 98.5 3.9E-07 8.5E-12 92.8 8.4 83 331-435 102-191 (248)
218 PRK08699 DNA polymerase III su 98.5 9.5E-07 2.1E-11 93.3 11.4 88 331-435 22-139 (325)
219 PRK06620 hypothetical protein; 98.4 2.1E-06 4.6E-11 85.4 12.4 26 331-356 45-70 (214)
220 KOG0736 Peroxisome assembly fa 98.4 1E-06 2.2E-11 100.0 11.0 136 331-494 432-567 (953)
221 KOG1942 DNA helicase, TBP-inte 98.4 3.6E-06 7.7E-11 87.1 13.6 33 520-553 348-380 (456)
222 TIGR00602 rad24 checkpoint pro 98.4 1.4E-06 3E-11 99.3 10.9 54 278-359 85-139 (637)
223 KOG0990 Replication factor C, 98.4 4E-07 8.8E-12 94.9 5.5 101 331-471 63-172 (360)
224 COG5271 MDN1 AAA ATPase contai 98.4 9.4E-07 2E-11 105.5 9.0 155 331-552 1544-1702(4600)
225 TIGR03015 pepcterm_ATPase puta 98.4 1E-05 2.2E-10 81.6 15.3 25 331-355 44-68 (269)
226 PRK10365 transcriptional regul 98.3 4.3E-06 9.3E-11 90.3 12.1 122 330-484 162-297 (441)
227 KOG0477 DNA replication licens 98.3 5.2E-07 1.1E-11 100.3 4.7 185 271-540 443-632 (854)
228 PRK08116 hypothetical protein; 98.3 1.7E-06 3.7E-11 89.0 8.2 86 331-435 115-206 (268)
229 COG4650 RtcR Sigma54-dependent 98.3 2.5E-06 5.4E-11 88.2 8.5 127 331-483 209-345 (531)
230 PF13401 AAA_22: AAA domain; P 98.2 1.8E-06 3.9E-11 77.2 6.2 36 331-366 5-48 (131)
231 PRK06526 transposase; Provisio 98.2 1.2E-06 2.7E-11 89.4 5.2 87 329-434 97-186 (254)
232 PRK07276 DNA polymerase III su 98.2 1.4E-05 3E-10 83.4 12.8 89 331-435 25-130 (290)
233 PRK07952 DNA replication prote 98.2 3.9E-06 8.4E-11 85.4 8.3 86 331-435 100-190 (244)
234 COG5271 MDN1 AAA ATPase contai 98.2 1.9E-06 4.2E-11 103.0 6.2 156 331-553 889-1047(4600)
235 PRK09087 hypothetical protein; 98.2 8.1E-06 1.8E-10 81.9 9.7 28 331-358 45-72 (226)
236 KOG0482 DNA replication licens 98.2 2E-06 4.3E-11 94.0 5.4 200 269-553 334-538 (721)
237 PRK09183 transposase/IS protei 98.2 2.7E-06 6E-11 87.0 6.1 95 323-435 95-192 (259)
238 PF06309 Torsin: Torsin; Inte 98.1 5.6E-06 1.2E-10 76.2 7.2 64 265-354 13-77 (127)
239 KOG0741 AAA+-type ATPase [Post 98.1 1.3E-05 2.7E-10 88.4 10.8 92 331-434 539-633 (744)
240 PRK05917 DNA polymerase III su 98.1 2.6E-05 5.7E-10 81.2 12.2 113 331-481 20-147 (290)
241 PRK08181 transposase; Validate 98.1 4.5E-06 9.7E-11 86.1 6.4 87 330-435 106-195 (269)
242 PF13173 AAA_14: AAA domain 98.1 1.4E-05 3E-10 72.6 8.4 70 331-408 3-74 (128)
243 KOG0481 DNA replication licens 98.1 3.7E-06 8E-11 92.0 5.3 202 271-552 325-526 (729)
244 KOG0058 Peptide exporter, ABC 98.0 1.8E-05 3.8E-10 90.1 10.3 118 317-443 480-661 (716)
245 PRK06835 DNA replication prote 98.0 1.3E-05 2.8E-10 85.0 8.5 86 331-435 184-274 (329)
246 PF01695 IstB_IS21: IstB-like 98.0 4.8E-06 1E-10 80.6 4.8 83 331-435 48-136 (178)
247 PRK07132 DNA polymerase III su 98.0 7E-05 1.5E-09 78.4 13.6 83 331-435 19-116 (299)
248 PF01637 Arch_ATPase: Archaeal 98.0 1.9E-05 4.2E-10 76.4 8.6 25 331-355 21-45 (234)
249 KOG2227 Pre-initiation complex 98.0 4.8E-05 1E-09 83.0 11.2 171 277-553 150-338 (529)
250 COG0464 SpoVK ATPases of the A 97.9 2.3E-05 5E-10 86.8 8.8 136 329-494 17-154 (494)
251 KOG2035 Replication factor C, 97.9 0.00013 2.8E-09 75.3 12.9 150 331-531 35-214 (351)
252 PF00910 RNA_helicase: RNA hel 97.9 4.4E-05 9.4E-10 67.6 8.4 23 333-355 1-23 (107)
253 COG1484 DnaC DNA replication p 97.9 5E-05 1.1E-09 77.7 9.1 84 330-434 105-194 (254)
254 PRK05818 DNA polymerase III su 97.9 0.00014 3.1E-09 74.7 12.3 113 330-480 7-139 (261)
255 PF12775 AAA_7: P-loop contain 97.9 1.8E-05 3.8E-10 81.7 5.7 115 331-470 34-158 (272)
256 COG1116 TauB ABC-type nitrate/ 97.8 4.4E-05 9.5E-10 77.6 8.0 37 318-354 16-53 (248)
257 PF05621 TniB: Bacterial TniB 97.8 0.00017 3.8E-09 75.3 12.3 72 268-365 25-105 (302)
258 PF05729 NACHT: NACHT domain 97.8 0.00023 4.9E-09 65.5 11.8 23 332-354 2-24 (166)
259 KOG1514 Origin recognition com 97.8 9.6E-05 2.1E-09 83.9 10.7 111 332-477 424-558 (767)
260 KOG0479 DNA replication licens 97.8 0.00013 2.9E-09 81.1 11.6 196 273-553 297-497 (818)
261 KOG0055 Multidrug/pheromone ex 97.8 7.8E-05 1.7E-09 89.3 10.4 120 316-444 1001-1184(1228)
262 PRK08939 primosomal protein Dn 97.8 4.1E-05 8.8E-10 80.4 7.2 36 331-366 157-195 (306)
263 PRK06921 hypothetical protein; 97.8 4.5E-05 9.8E-10 78.4 6.7 35 331-365 118-156 (266)
264 PF12774 AAA_6: Hydrolytic ATP 97.7 8E-05 1.7E-09 75.3 7.4 66 332-410 34-99 (231)
265 cd01120 RecA-like_NTPases RecA 97.7 0.00021 4.6E-09 65.0 9.6 32 333-364 2-36 (165)
266 KOG2680 DNA helicase TIP49, TB 97.7 0.00039 8.4E-09 72.6 12.3 37 330-366 66-104 (454)
267 PF13191 AAA_16: AAA ATPase do 97.6 0.00013 2.7E-09 68.8 6.4 59 279-366 2-63 (185)
268 COG4608 AppF ABC-type oligopep 97.6 0.0002 4.3E-09 73.7 8.0 37 319-355 27-64 (268)
269 KOG0055 Multidrug/pheromone ex 97.6 0.00024 5.1E-09 85.3 9.6 125 317-450 365-553 (1228)
270 COG2274 SunT ABC-type bacterio 97.6 0.00023 5E-09 82.5 9.1 41 314-354 482-523 (709)
271 KOG0056 Heavy metal exporter H 97.5 0.00032 7E-09 77.1 9.2 50 317-366 550-602 (790)
272 PF03215 Rad17: Rad17 cell cyc 97.5 0.00049 1.1E-08 77.3 10.6 31 331-361 46-76 (519)
273 COG0593 DnaA ATPase involved i 97.5 0.0004 8.7E-09 75.5 9.5 24 331-354 114-137 (408)
274 KOG1051 Chaperone HSP104 and r 97.5 0.00085 1.8E-08 78.9 12.4 77 331-411 209-296 (898)
275 cd03216 ABC_Carb_Monos_I This 97.5 0.00027 5.8E-09 67.0 6.8 36 319-354 14-50 (163)
276 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.5E-09 64.9 4.0 30 333-362 2-31 (121)
277 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00028 6E-09 65.7 6.5 36 319-354 14-50 (144)
278 TIGR02868 CydC thiol reductant 97.4 0.00028 6.2E-09 78.6 7.5 36 319-354 349-385 (529)
279 KOG1808 AAA ATPase containing 97.4 0.00012 2.5E-09 90.8 4.7 118 331-462 441-561 (1856)
280 cd03246 ABCC_Protease_Secretio 97.4 0.00056 1.2E-08 65.2 7.9 36 319-354 16-52 (173)
281 PRK11174 cysteine/glutathione 97.3 0.00034 7.3E-09 79.0 6.9 37 318-354 363-400 (588)
282 COG1132 MdlB ABC-type multidru 97.3 0.00072 1.6E-08 76.1 9.3 39 317-355 341-380 (567)
283 TIGR03375 type_I_sec_LssB type 97.3 0.0006 1.3E-08 78.7 8.6 37 318-354 478-515 (694)
284 cd03228 ABCC_MRP_Like The MRP 97.3 0.00074 1.6E-08 64.3 7.9 36 319-354 16-52 (171)
285 PF13604 AAA_30: AAA domain; P 97.3 0.003 6.4E-08 62.0 12.2 89 331-434 19-118 (196)
286 COG1125 OpuBA ABC-type proline 97.3 0.00086 1.9E-08 68.8 8.1 38 317-354 13-51 (309)
287 cd01128 rho_factor Transcripti 97.2 0.00083 1.8E-08 68.7 7.9 82 330-411 16-119 (249)
288 PRK00131 aroK shikimate kinase 97.2 0.00037 7.9E-09 65.1 4.4 30 331-360 5-34 (175)
289 cd03223 ABCD_peroxisomal_ALDP 97.2 0.00093 2E-08 63.5 7.1 36 319-354 15-51 (166)
290 PRK10536 hypothetical protein; 97.2 0.0032 7E-08 64.8 11.3 23 331-353 75-97 (262)
291 COG3854 SpoIIIAA ncharacterize 97.2 0.0017 3.6E-08 65.9 8.8 77 331-408 138-231 (308)
292 PRK08118 topology modulation p 97.1 0.00041 8.9E-09 66.4 4.0 32 332-363 3-34 (167)
293 PHA00729 NTP-binding motif con 97.1 0.00069 1.5E-08 68.4 5.7 25 331-355 18-42 (226)
294 PRK15455 PrkA family serine pr 97.1 0.00066 1.4E-08 76.6 5.9 60 278-363 77-137 (644)
295 PF03266 NTPase_1: NTPase; In 97.1 0.0017 3.8E-08 62.4 8.1 23 332-354 1-23 (168)
296 PRK13947 shikimate kinase; Pro 97.1 0.00051 1.1E-08 64.7 4.2 31 332-362 3-33 (171)
297 COG0410 LivF ABC-type branched 97.1 0.00092 2E-08 67.5 6.1 39 317-355 15-54 (237)
298 PRK09376 rho transcription ter 97.1 0.0013 2.8E-08 71.4 7.6 82 330-411 169-272 (416)
299 COG5265 ATM1 ABC-type transpor 97.1 0.0035 7.5E-08 68.2 10.7 52 316-367 274-328 (497)
300 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.00064 1.4E-08 73.1 5.2 28 329-356 61-88 (362)
301 PTZ00265 multidrug resistance 97.1 0.0015 3.2E-08 81.5 9.1 38 319-356 1182-1220(1466)
302 TIGR03796 NHPM_micro_ABC1 NHPM 97.1 0.0019 4.1E-08 74.7 9.3 37 318-354 492-529 (710)
303 PRK07261 topology modulation p 97.0 0.0013 2.8E-08 63.1 6.6 34 332-365 2-35 (171)
304 TIGR03797 NHPM_micro_ABC2 NHPM 97.0 0.0018 3.9E-08 74.7 8.9 37 318-354 466-503 (686)
305 COG4619 ABC-type uncharacteriz 97.0 0.0016 3.4E-08 63.4 6.8 37 318-354 16-53 (223)
306 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0017 3.6E-08 63.1 7.0 34 320-354 15-49 (177)
307 PRK03839 putative kinase; Prov 97.0 0.00063 1.4E-08 65.0 4.0 30 332-361 2-31 (180)
308 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0019 4.2E-08 60.3 7.2 37 319-355 13-50 (157)
309 cd00464 SK Shikimate kinase (S 97.0 0.00077 1.7E-08 62.0 4.3 31 332-362 1-31 (154)
310 PRK04296 thymidine kinase; Pro 97.0 0.0032 6.9E-08 61.4 8.8 31 332-362 4-37 (190)
311 PF05272 VirE: Virulence-assoc 97.0 0.00089 1.9E-08 66.2 4.8 98 332-471 54-151 (198)
312 PLN03130 ABC transporter C fam 96.9 0.0022 4.7E-08 80.9 8.9 37 318-354 1252-1289(1622)
313 COG1120 FepC ABC-type cobalami 96.9 0.00069 1.5E-08 69.6 3.7 38 317-354 14-52 (258)
314 COG4988 CydD ABC-type transpor 96.9 0.0029 6.4E-08 71.0 8.8 36 319-354 335-371 (559)
315 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0033 7.3E-08 62.6 8.4 34 319-352 19-52 (216)
316 PRK11176 lipid transporter ATP 96.9 0.0031 6.7E-08 71.1 9.2 37 318-354 356-393 (582)
317 COG4618 ArpD ABC-type protease 96.9 0.0018 4E-08 71.6 7.1 99 268-368 292-402 (580)
318 PF13671 AAA_33: AAA domain; P 96.9 0.00059 1.3E-08 61.9 2.8 26 333-358 2-27 (143)
319 PLN03232 ABC transporter C fam 96.9 0.0023 4.9E-08 80.2 8.7 37 318-354 1249-1286(1495)
320 TIGR01193 bacteriocin_ABC ABC- 96.9 0.0034 7.3E-08 72.7 9.5 37 318-354 487-524 (708)
321 COG1618 Predicted nucleotide k 96.9 0.0036 7.8E-08 60.3 8.0 24 331-354 6-29 (179)
322 PRK00625 shikimate kinase; Pro 96.9 0.00093 2E-08 64.6 4.1 31 332-362 2-32 (173)
323 PHA02774 E1; Provisional 96.9 0.0069 1.5E-07 68.5 11.5 76 331-440 435-511 (613)
324 KOG0057 Mitochondrial Fe/S clu 96.9 0.0039 8.5E-08 69.6 9.3 51 317-367 364-416 (591)
325 TIGR01846 type_I_sec_HlyB type 96.9 0.0037 8E-08 72.3 9.6 37 318-354 470-507 (694)
326 COG3842 PotA ABC-type spermidi 96.9 0.00064 1.4E-08 72.7 3.0 38 317-354 17-55 (352)
327 PHA02624 large T antigen; Prov 96.9 0.0086 1.9E-07 68.1 12.0 126 331-488 432-560 (647)
328 COG1134 TagH ABC-type polysacc 96.9 0.0034 7.3E-08 63.9 7.9 38 317-354 39-77 (249)
329 PRK06217 hypothetical protein; 96.8 0.0011 2.4E-08 63.8 4.1 31 332-362 3-33 (183)
330 TIGR00767 rho transcription te 96.8 0.0028 6.2E-08 68.9 7.6 86 325-410 162-270 (415)
331 PRK13948 shikimate kinase; Pro 96.8 0.0013 2.8E-08 64.2 4.6 35 328-362 8-42 (182)
332 PRK14532 adenylate kinase; Pro 96.8 0.0011 2.3E-08 63.8 4.0 29 332-360 2-30 (188)
333 COG1124 DppF ABC-type dipeptid 96.8 0.00079 1.7E-08 68.4 3.1 35 320-354 22-57 (252)
334 PRK14530 adenylate kinase; Pro 96.8 0.0012 2.7E-08 65.1 4.5 30 331-360 4-33 (215)
335 TIGR00957 MRP_assoc_pro multi 96.8 0.0035 7.5E-08 78.7 9.2 37 318-354 1299-1336(1522)
336 cd01124 KaiC KaiC is a circadi 96.8 0.0036 7.8E-08 59.4 7.2 31 333-363 2-35 (187)
337 PRK13949 shikimate kinase; Pro 96.8 0.0012 2.6E-08 63.3 3.9 31 332-362 3-33 (169)
338 PRK11160 cysteine/glutathione 96.8 0.0035 7.6E-08 71.0 8.2 36 319-354 354-390 (574)
339 PRK13657 cyclic beta-1,2-gluca 96.8 0.0031 6.7E-08 71.4 7.7 37 318-354 348-385 (588)
340 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0048 1.1E-07 61.1 8.0 35 319-353 17-52 (204)
341 KOG1968 Replication factor C, 96.7 0.00086 1.9E-08 79.1 2.9 77 332-409 359-442 (871)
342 TIGR02688 conserved hypothetic 96.7 0.008 1.7E-07 65.9 10.1 79 330-435 209-290 (449)
343 COG1123 ATPase components of v 96.7 0.0027 5.8E-08 71.2 6.6 37 318-354 304-341 (539)
344 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0015 3.3E-08 62.2 4.1 31 333-365 2-32 (183)
345 COG4178 ABC-type uncharacteriz 96.7 0.007 1.5E-07 68.8 9.9 36 319-354 407-443 (604)
346 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0052 1.1E-07 60.1 7.8 30 322-351 18-49 (200)
347 PF00931 NB-ARC: NB-ARC domain 96.7 0.01 2.2E-07 60.2 10.1 23 331-353 20-42 (287)
348 COG3839 MalK ABC-type sugar tr 96.7 0.0011 2.3E-08 70.7 3.1 35 320-354 18-53 (338)
349 PRK00771 signal recognition pa 96.7 0.021 4.6E-07 63.0 13.1 37 330-366 95-134 (437)
350 cd02021 GntK Gluconate kinase 96.7 0.0017 3.6E-08 60.0 3.9 27 333-359 2-28 (150)
351 TIGR00958 3a01208 Conjugate Tr 96.7 0.0042 9.2E-08 72.2 8.1 37 318-354 494-531 (711)
352 TIGR01618 phage_P_loop phage n 96.7 0.0026 5.7E-08 64.0 5.5 22 330-351 12-33 (220)
353 cd01428 ADK Adenylate kinase ( 96.7 0.0018 3.8E-08 62.0 4.1 28 333-360 2-29 (194)
354 cd02020 CMPK Cytidine monophos 96.7 0.0018 3.8E-08 58.9 4.0 30 333-362 2-31 (147)
355 TIGR01313 therm_gnt_kin carboh 96.7 0.0016 3.4E-08 61.1 3.6 27 333-359 1-27 (163)
356 cd02027 APSK Adenosine 5'-phos 96.7 0.0051 1.1E-07 57.6 7.1 34 333-366 2-38 (149)
357 KOG2543 Origin recognition com 96.6 0.025 5.3E-07 61.1 12.8 62 275-365 4-65 (438)
358 PRK05057 aroK shikimate kinase 96.6 0.0021 4.5E-08 61.7 4.5 33 331-363 5-37 (172)
359 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.00098 2.1E-08 65.4 2.3 36 319-354 18-54 (218)
360 PRK14531 adenylate kinase; Pro 96.6 0.002 4.4E-08 62.1 4.4 30 331-360 3-32 (183)
361 PRK10790 putative multidrug tr 96.6 0.0049 1.1E-07 69.8 8.1 37 318-354 354-391 (592)
362 COG1126 GlnQ ABC-type polar am 96.6 0.0013 2.9E-08 65.9 3.0 37 317-353 14-51 (240)
363 COG0444 DppD ABC-type dipeptid 96.6 0.0027 5.8E-08 66.9 5.4 37 319-355 19-56 (316)
364 COG0703 AroK Shikimate kinase 96.6 0.0017 3.7E-08 63.0 3.6 32 331-362 3-34 (172)
365 cd03283 ABC_MutS-like MutS-lik 96.6 0.0087 1.9E-07 59.0 8.7 35 319-354 15-49 (199)
366 COG4175 ProV ABC-type proline/ 96.6 0.0033 7.2E-08 66.3 6.0 37 318-354 41-78 (386)
367 cd01131 PilT Pilus retraction 96.6 0.017 3.6E-07 56.7 10.6 25 331-355 2-26 (198)
368 TIGR01166 cbiO cobalt transpor 96.6 0.0012 2.7E-08 63.5 2.6 36 319-354 6-42 (190)
369 TIGR02315 ABC_phnC phosphonate 96.6 0.0013 2.9E-08 65.6 2.8 36 319-354 16-52 (243)
370 PF00005 ABC_tran: ABC transpo 96.6 0.00073 1.6E-08 61.1 0.8 34 321-354 1-35 (137)
371 PRK14974 cell division protein 96.6 0.014 3E-07 62.3 10.6 33 331-363 141-176 (336)
372 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0013 2.8E-08 64.3 2.6 36 319-354 15-51 (211)
373 PRK14722 flhF flagellar biosyn 96.6 0.047 1E-06 59.2 14.6 24 331-354 138-161 (374)
374 KOG0054 Multidrug resistance-a 96.6 0.011 2.4E-07 72.7 10.9 139 314-468 1149-1350(1381)
375 PRK15177 Vi polysaccharide exp 96.6 0.0013 2.8E-08 65.1 2.5 35 320-354 2-37 (213)
376 PRK03731 aroL shikimate kinase 96.6 0.0026 5.7E-08 60.1 4.4 32 331-362 3-34 (171)
377 TIGR02673 FtsE cell division A 96.6 0.0014 3E-08 64.2 2.6 36 319-354 16-52 (214)
378 TIGR01425 SRP54_euk signal rec 96.5 0.037 7.9E-07 61.0 13.8 35 331-365 101-138 (429)
379 TIGR02857 CydD thiol reductant 96.5 0.0052 1.1E-07 68.6 7.4 36 319-354 336-372 (529)
380 PRK13946 shikimate kinase; Pro 96.5 0.0023 5.1E-08 61.8 4.1 33 330-362 10-42 (184)
381 cd03260 ABC_PstB_phosphate_tra 96.5 0.0017 3.6E-08 64.3 3.0 36 319-354 14-50 (227)
382 PTZ00243 ABC transporter; Prov 96.5 0.0061 1.3E-07 76.7 8.6 37 318-354 1323-1360(1560)
383 cd00227 CPT Chloramphenicol (C 96.5 0.0022 4.7E-08 61.3 3.7 33 331-363 3-35 (175)
384 cd03256 ABC_PhnC_transporter A 96.5 0.0014 3.1E-08 65.2 2.5 36 319-354 15-51 (241)
385 cd03258 ABC_MetN_methionine_tr 96.5 0.0015 3.3E-08 64.9 2.6 36 319-354 19-55 (233)
386 TIGR03608 L_ocin_972_ABC putat 96.5 0.0015 3.3E-08 63.4 2.5 36 319-354 12-48 (206)
387 TIGR00960 3a0501s02 Type II (G 96.5 0.0014 3.1E-08 64.3 2.2 36 319-354 17-53 (216)
388 cd03243 ABC_MutS_homologs The 96.5 0.0098 2.1E-07 58.2 8.0 27 326-352 24-51 (202)
389 cd03269 ABC_putative_ATPase Th 96.5 0.0014 3E-08 64.1 2.0 36 319-354 14-50 (210)
390 cd03263 ABC_subfamily_A The AB 96.5 0.0016 3.5E-08 64.0 2.5 36 319-354 16-52 (220)
391 cd03261 ABC_Org_Solvent_Resist 96.5 0.0014 3.1E-08 65.2 2.1 36 319-354 14-50 (235)
392 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0018 3.8E-08 63.3 2.7 36 319-354 14-50 (213)
393 cd01129 PulE-GspE PulE/GspE Th 96.5 0.018 4E-07 59.2 10.3 25 331-355 81-105 (264)
394 cd03292 ABC_FtsE_transporter F 96.5 0.0016 3.4E-08 63.7 2.4 36 319-354 15-51 (214)
395 cd03259 ABC_Carb_Solutes_like 96.5 0.0018 3.8E-08 63.5 2.7 36 319-354 14-50 (213)
396 cd03235 ABC_Metallic_Cations A 96.5 0.0015 3.3E-08 64.0 2.2 36 319-354 13-49 (213)
397 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0016 3.5E-08 63.5 2.4 36 319-354 14-50 (205)
398 KOG3347 Predicted nucleotide k 96.4 0.0028 6.1E-08 60.3 3.8 30 331-360 8-37 (176)
399 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0031 6.7E-08 59.9 4.2 29 331-359 4-32 (188)
400 PRK06762 hypothetical protein; 96.4 0.0029 6.2E-08 59.5 3.9 36 331-366 3-38 (166)
401 cd03229 ABC_Class3 This class 96.4 0.0016 3.5E-08 62.4 2.2 36 319-354 14-50 (178)
402 cd03301 ABC_MalK_N The N-termi 96.4 0.0018 3.9E-08 63.4 2.5 36 319-354 14-50 (213)
403 cd03264 ABC_drug_resistance_li 96.4 0.0017 3.8E-08 63.5 2.4 36 319-354 14-49 (211)
404 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.0017 3.6E-08 64.1 2.2 36 319-354 18-54 (220)
405 PF13521 AAA_28: AAA domain; P 96.4 0.0046 1E-07 58.1 5.0 32 333-365 2-33 (163)
406 COG1127 Ttg2A ABC-type transpo 96.4 0.0063 1.4E-07 62.0 6.1 51 317-367 20-73 (263)
407 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0018 4E-08 63.7 2.3 36 319-354 19-55 (221)
408 TIGR03410 urea_trans_UrtE urea 96.4 0.0019 4.1E-08 64.1 2.4 36 319-354 14-50 (230)
409 PRK10247 putative ABC transpor 96.4 0.0021 4.6E-08 63.8 2.8 36 319-354 21-57 (225)
410 cd03218 ABC_YhbG The ABC trans 96.4 0.0021 4.5E-08 63.8 2.7 36 319-354 14-50 (232)
411 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0019 4E-08 64.3 2.3 36 319-354 14-50 (236)
412 cd03257 ABC_NikE_OppD_transpor 96.4 0.0021 4.6E-08 63.4 2.7 36 319-354 19-55 (228)
413 PRK14247 phosphate ABC transpo 96.4 0.0022 4.8E-08 64.4 2.8 36 319-354 17-53 (250)
414 smart00534 MUTSac ATPase domai 96.4 0.011 2.4E-07 57.2 7.6 19 333-351 2-20 (185)
415 cd03224 ABC_TM1139_LivF_branch 96.4 0.0017 3.8E-08 63.8 2.0 36 319-354 14-50 (222)
416 cd03296 ABC_CysA_sulfate_impor 96.4 0.002 4.3E-08 64.5 2.4 36 319-354 16-52 (239)
417 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.4 0.0022 4.8E-08 63.9 2.7 36 319-354 17-53 (238)
418 TIGR01271 CFTR_protein cystic 96.3 0.011 2.4E-07 74.1 9.4 38 317-354 1231-1269(1490)
419 PRK02496 adk adenylate kinase; 96.3 0.0035 7.6E-08 60.1 3.9 29 332-360 3-31 (184)
420 PRK11022 dppD dipeptide transp 96.3 0.0019 4.2E-08 68.2 2.3 37 319-355 21-58 (326)
421 cd03245 ABCC_bacteriocin_expor 96.3 0.0025 5.3E-08 62.7 2.9 36 319-354 18-54 (220)
422 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.012 2.7E-07 59.1 7.9 34 319-352 19-53 (222)
423 PRK11629 lolD lipoprotein tran 96.3 0.002 4.4E-08 64.1 2.2 36 319-354 23-59 (233)
424 TIGR02770 nickel_nikD nickel i 96.3 0.0026 5.7E-08 63.3 3.0 36 320-355 1-37 (230)
425 COG4525 TauB ABC-type taurine 96.3 0.0052 1.1E-07 61.2 4.9 37 318-354 18-55 (259)
426 PTZ00088 adenylate kinase 1; P 96.3 0.0038 8.3E-08 63.0 4.2 29 332-360 8-36 (229)
427 PRK11264 putative amino-acid A 96.3 0.0025 5.4E-08 64.0 2.8 36 319-354 17-53 (250)
428 cd03251 ABCC_MsbA MsbA is an e 96.3 0.0024 5.3E-08 63.4 2.7 36 319-354 16-52 (234)
429 cd03247 ABCC_cytochrome_bd The 96.3 0.0023 4.9E-08 61.2 2.4 36 319-354 16-52 (178)
430 PF13238 AAA_18: AAA domain; P 96.3 0.0031 6.7E-08 55.6 3.1 22 333-354 1-22 (129)
431 COG1373 Predicted ATPase (AAA+ 96.3 0.028 6.1E-07 61.2 11.1 69 332-408 39-107 (398)
432 cd03238 ABC_UvrA The excision 96.3 0.0028 6.2E-08 61.4 3.1 34 319-352 9-43 (176)
433 PRK14528 adenylate kinase; Pro 96.3 0.0041 8.9E-08 60.4 4.2 29 332-360 3-31 (186)
434 PRK10584 putative ABC transpor 96.3 0.0023 5.1E-08 63.3 2.5 35 320-354 25-60 (228)
435 PF01583 APS_kinase: Adenylyls 96.3 0.008 1.7E-07 57.5 6.0 36 332-367 4-42 (156)
436 cd03244 ABCC_MRP_domain2 Domai 96.3 0.0028 6E-08 62.4 3.0 36 319-354 18-54 (221)
437 COG1102 Cmk Cytidylate kinase 96.3 0.0037 8.1E-08 60.2 3.7 33 521-553 138-170 (179)
438 cd03265 ABC_DrrA DrrA is the A 96.3 0.0025 5.4E-08 62.9 2.6 36 319-354 14-50 (220)
439 PRK08154 anaerobic benzoate ca 96.3 0.0075 1.6E-07 63.3 6.3 32 331-362 134-165 (309)
440 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0026 5.6E-08 57.2 2.5 33 319-351 3-36 (107)
441 PRK14256 phosphate ABC transpo 96.3 0.0027 5.9E-08 64.0 2.9 36 319-354 18-54 (252)
442 TIGR02237 recomb_radB DNA repa 96.3 0.0093 2E-07 58.2 6.6 34 332-365 14-50 (209)
443 COG0396 sufC Cysteine desulfur 96.3 0.004 8.7E-08 63.0 4.0 38 318-355 17-55 (251)
444 TIGR02203 MsbA_lipidA lipid A 96.3 0.02 4.3E-07 64.4 10.1 37 318-354 345-382 (571)
445 PF13245 AAA_19: Part of AAA d 96.3 0.0069 1.5E-07 50.9 4.8 24 331-354 11-35 (76)
446 PF07693 KAP_NTPase: KAP famil 96.3 0.04 8.7E-07 57.1 11.6 27 331-357 21-47 (325)
447 cd03254 ABCC_Glucan_exporter_l 96.3 0.0028 6E-08 62.7 2.8 36 319-354 17-53 (229)
448 PRK10908 cell division protein 96.3 0.0023 5.1E-08 63.1 2.3 36 319-354 16-52 (222)
449 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0024 5.1E-08 63.8 2.3 36 319-354 15-51 (236)
450 PRK14267 phosphate ABC transpo 96.2 0.0028 6E-08 63.9 2.7 36 319-354 18-54 (253)
451 cd03215 ABC_Carb_Monos_II This 96.2 0.0025 5.5E-08 61.2 2.3 35 320-354 15-50 (182)
452 TIGR01978 sufC FeS assembly AT 96.2 0.0031 6.8E-08 62.9 3.1 36 319-354 14-50 (243)
453 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0025 5.4E-08 62.2 2.3 36 319-354 14-50 (208)
454 PRK10744 pstB phosphate transp 96.2 0.0028 6.1E-08 64.3 2.8 36 319-354 27-63 (260)
455 PRK14273 phosphate ABC transpo 96.2 0.0031 6.7E-08 63.6 3.1 37 319-355 21-58 (254)
456 PRK11248 tauB taurine transpor 96.2 0.0024 5.3E-08 64.9 2.3 36 319-354 15-51 (255)
457 cd03252 ABCC_Hemolysin The ABC 96.2 0.0028 6.1E-08 63.1 2.7 36 319-354 16-52 (237)
458 PRK11124 artP arginine transpo 96.2 0.0025 5.5E-08 63.7 2.4 36 319-354 16-52 (242)
459 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0025 5.4E-08 60.7 2.2 36 319-354 14-50 (173)
460 PRK13538 cytochrome c biogenes 96.2 0.0027 5.7E-08 62.1 2.5 36 319-354 15-51 (204)
461 TIGR03005 ectoine_ehuA ectoine 96.2 0.0024 5.2E-08 64.4 2.2 36 319-354 14-50 (252)
462 cd03266 ABC_NatA_sodium_export 96.2 0.0027 5.9E-08 62.3 2.5 36 319-354 19-55 (218)
463 PRK14242 phosphate transporter 96.2 0.0033 7.2E-08 63.3 3.2 36 319-354 20-56 (253)
464 COG1117 PstB ABC-type phosphat 96.2 0.0036 7.7E-08 63.0 3.2 38 317-354 19-57 (253)
465 cd03250 ABCC_MRP_domain1 Domai 96.2 0.0029 6.3E-08 61.7 2.6 36 319-354 19-55 (204)
466 cd03234 ABCG_White The White s 96.2 0.0031 6.8E-08 62.5 2.9 38 318-355 20-58 (226)
467 PRK14253 phosphate ABC transpo 96.2 0.0036 7.8E-08 62.9 3.4 37 319-355 17-54 (249)
468 PRK13539 cytochrome c biogenes 96.2 0.0027 5.8E-08 62.3 2.4 36 319-354 16-52 (207)
469 PRK12608 transcription termina 96.2 0.013 2.7E-07 63.5 7.6 24 331-354 134-157 (380)
470 TIGR02324 CP_lyasePhnL phospho 96.2 0.0027 6E-08 62.6 2.5 36 319-354 22-58 (224)
471 TIGR01526 nadR_NMN_Atrans nico 96.2 0.0081 1.8E-07 63.7 6.1 37 331-367 163-199 (325)
472 TIGR02858 spore_III_AA stage I 96.2 0.011 2.3E-07 61.3 6.9 25 331-355 112-136 (270)
473 PRK09493 glnQ glutamine ABC tr 96.2 0.0027 5.9E-08 63.4 2.4 36 319-354 15-51 (240)
474 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0034 7.5E-08 62.0 3.1 36 319-354 28-64 (226)
475 TIGR01448 recD_rel helicase, p 96.2 0.02 4.4E-07 66.9 9.8 89 331-434 339-441 (720)
476 PRK13540 cytochrome c biogenes 96.2 0.0028 6.1E-08 61.7 2.4 36 319-354 15-51 (200)
477 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.014 3E-07 58.2 7.2 22 331-352 30-51 (213)
478 cd03295 ABC_OpuCA_Osmoprotecti 96.2 0.0028 6.1E-08 63.5 2.3 36 319-354 15-51 (242)
479 PRK14274 phosphate ABC transpo 96.2 0.0034 7.4E-08 63.6 3.0 36 319-354 26-62 (259)
480 PRK06547 hypothetical protein; 96.2 0.0049 1.1E-07 59.5 3.9 31 331-361 16-46 (172)
481 TIGR01189 ccmA heme ABC export 96.2 0.0028 6E-08 61.6 2.2 36 319-354 14-50 (198)
482 cd03285 ABC_MSH2_euk MutS2 hom 96.2 0.016 3.4E-07 58.1 7.7 35 319-353 18-53 (222)
483 TIGR00972 3a0107s01c2 phosphat 96.2 0.0032 6.9E-08 63.3 2.7 36 319-354 15-51 (247)
484 TIGR01351 adk adenylate kinase 96.2 0.005 1.1E-07 60.6 4.0 28 333-360 2-29 (210)
485 PRK10895 lipopolysaccharide AB 96.1 0.0028 6E-08 63.4 2.2 36 319-354 17-53 (241)
486 TIGR01188 drrA daunorubicin re 96.1 0.0028 6E-08 66.0 2.3 36 319-354 7-43 (302)
487 PRK12723 flagellar biosynthesi 96.1 0.1 2.2E-06 56.8 14.3 25 330-354 174-198 (388)
488 cd03214 ABC_Iron-Siderophores_ 96.1 0.0031 6.7E-08 60.5 2.4 36 319-354 13-49 (180)
489 cd03253 ABCC_ATM1_transporter 96.1 0.0034 7.3E-08 62.4 2.7 36 319-354 15-51 (236)
490 PRK13648 cbiO cobalt transport 96.1 0.0032 6.9E-08 64.3 2.6 36 319-354 23-59 (269)
491 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.0041 8.9E-08 60.8 3.2 36 319-354 22-58 (207)
492 TIGR01184 ntrCD nitrate transp 96.1 0.0035 7.6E-08 62.5 2.8 34 321-354 1-35 (230)
493 COG0529 CysC Adenylylsulfate k 96.1 0.014 3E-07 57.2 6.7 36 332-367 25-63 (197)
494 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.0033 7.2E-08 64.5 2.7 36 319-354 18-54 (254)
495 cd03290 ABCC_SUR1_N The SUR do 96.1 0.0034 7.4E-08 61.8 2.7 36 319-354 15-51 (218)
496 PRK00279 adk adenylate kinase; 96.1 0.0056 1.2E-07 60.5 4.2 29 332-360 2-30 (215)
497 PRK14262 phosphate ABC transpo 96.1 0.0034 7.3E-08 63.1 2.6 36 319-354 17-53 (250)
498 COG1136 SalX ABC-type antimicr 96.1 0.0043 9.4E-08 62.7 3.4 37 318-354 18-55 (226)
499 PRK14248 phosphate ABC transpo 96.1 0.0039 8.4E-08 63.6 3.1 37 318-354 34-71 (268)
500 PRK14250 phosphate ABC transpo 96.1 0.0032 6.9E-08 63.2 2.4 36 319-354 17-53 (241)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-53 Score=443.26 Aligned_cols=356 Identities=59% Similarity=0.858 Sum_probs=296.2
Q ss_pred ccccCCCCCCCCCCCCCCCceeec-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhhcccCChHHH
Q 008329 207 SITSSYGDPPEVWQPPGDGIAVRV-NGQGPNLVRGGGSGSGFGSGSKDGCWGGSNLGNKFPTPKEICKGLDKFVIGQERA 285 (570)
Q Consensus 207 ~~~~s~~~~p~~~~~~g~g~~~r~-~~~~p~~~~gggg~~~~g~~~~~~~~~~~~~~~~~~~p~el~~~L~~~ViGqd~a 285 (570)
..++|..++++-|.+ ++||.... ..+--......+. ..+......|.+..-....|+|++|++.||++||||+.|
T Consensus 78 ~~~~s~~~~~~t~~~-s~~f~~~k~~~sfv~~~~~~~~---~~~~~~p~~~~gg~~~k~~P~PkeI~~~Ldk~VVGQe~A 153 (564)
T KOG0745|consen 78 PKCTSQCTPLETFVS-SQGFILCKCNKSFVVLYEADGA---KPGKLSPSNRDGGFQLKPPPTPKEICEYLDKFVVGQEKA 153 (564)
T ss_pred ccccccCCchhhccC-CCCeEEeeccchhhhhhhcccC---CCCCCCccccccccccCCCCChHHHHHHhhhheechhhh
Confidence 357778888888865 67776551 1110011011111 111111222333333448899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhh--hhhcccccCCCCCC------------------------CCCCCCCC--cccccCCcEEEEC
Q 008329 286 KKVLSVAVYNHYMRIYN--ESSQKRSAGESSSC------------------------TTDGVDDD--TVELEKSNILLMG 337 (570)
Q Consensus 286 k~~L~~aV~~~~~r~~~--~~~~~~~~~~~~~~------------------------~~~~ld~i--s~~i~~~~vLL~G 337 (570)
|+.|..+|++||+|+++ .+.++..+..+... -..+++.. ++++.+.+|||.|
T Consensus 154 KKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~dv~LeKSNvLllG 233 (564)
T KOG0745|consen 154 KKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDEDVELEKSNVLLLG 233 (564)
T ss_pred hheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccceeeecccEEEEC
Confidence 99999999999999999 33333222211110 12334444 7889999999999
Q ss_pred CCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 338 PTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 338 PPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
|+|+|||.||+.||+.++.||...||+.+++.||||++++..+.+++..|.+++.+++.+||||||+|++..+..+.+..
T Consensus 234 PtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~ 313 (564)
T KOG0745|consen 234 PTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS 313 (564)
T ss_pred CCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred CCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCch----hhh
Q 008329 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP----VRA 493 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p----~~e 493 (570)
+|+++|++|++||+++||+.|+||+++.++..++..++|||+|++|||.|+|.++++.+.+|+.++.+||+.| .+.
T Consensus 314 RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~ 393 (564)
T KOG0745|consen 314 RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRA 393 (564)
T ss_pred ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred hhhc-CCCC-hHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-----hccccccccCCcc
Q 008329 494 NMRA-GGVT-DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLTG 566 (570)
Q Consensus 494 ~~~~-~~~~-~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~~ 566 (570)
+|.. ...+ +......+++.++++||+.||++|||++||+++|+|..|++++|++||+|++ ||+++|++++|.-
T Consensus 394 ~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745|consen 394 NMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred hcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeE
Confidence 6665 3333 4444466999999999999999999999999999999999999999999998 9999999999964
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-51 Score=413.50 Aligned_cols=282 Identities=59% Similarity=0.941 Sum_probs=262.7
Q ss_pred CCCCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCC
Q 008329 262 GNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGS 341 (570)
Q Consensus 262 ~~~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGT 341 (570)
....|+|.+|++.|+++|+||+.||+.|..+|+|||+|+.... +..++++.+.++||+||+||
T Consensus 46 ~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~-----------------~~~dvEL~KSNILLiGPTGs 108 (408)
T COG1219 46 LSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE-----------------DNDDVELSKSNILLIGPTGS 108 (408)
T ss_pred hccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC-----------------CCCceeeeeccEEEECCCCC
Confidence 3468999999999999999999999999999999999986543 12247888899999999999
Q ss_pred chHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCc
Q 008329 342 GKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (570)
Q Consensus 342 GKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~ 421 (570)
|||.||+.+|+.++.||...+++.+++.||||++++..+.++++.+++++..+..|||+|||||+++.+.+..+..+|++
T Consensus 109 GKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVS 188 (408)
T COG1219 109 GKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVS 188 (408)
T ss_pred cHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred hHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCC
Q 008329 422 GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVT 501 (570)
Q Consensus 422 ~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~ 501 (570)
+|++|++||++|||+..+||.+|.++++....+++||+|++|||.|+|..+++++..|.-...|||+....+. .
T Consensus 189 GEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~------~ 262 (408)
T COG1219 189 GEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK------S 262 (408)
T ss_pred chHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999776532 2
Q ss_pred hHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-----hccccccccCCcc
Q 008329 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLTG 566 (570)
Q Consensus 502 ~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~~ 566 (570)
.+.....+++.+.++||+++|++|||++|++++..+++|++++|++||++++ ||+++|++.||.-
T Consensus 263 ~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L 332 (408)
T COG1219 263 KKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVEL 332 (408)
T ss_pred hhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceE
Confidence 2344578999999999999999999999999999999999999999999998 9999999999964
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=3.6e-38 Score=338.63 Aligned_cols=279 Identities=60% Similarity=0.954 Sum_probs=241.2
Q ss_pred CCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchH
Q 008329 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (570)
Q Consensus 265 ~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKT 344 (570)
.++|+++.+.|+++|+||++||+.|..++++||+|+....... ..++....++||+||||||||
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~----------------~~~~~~~~~iLl~Gp~GtGKT 122 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKD----------------DDVELQKSNILLIGPTGSGKT 122 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccc----------------cccccCCceEEEEcCCCCCHH
Confidence 7899999999999999999999999999999999875432110 123345689999999999999
Q ss_pred HHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHH
Q 008329 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (570)
Q Consensus 345 tLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~ 424 (570)
++|+++|+.++.+|+.++++.+.+.+|+|++.+..+..++..+.+.+..+.++||||||||++..++...+..+|+++++
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 99999999999999999999998889999988887777777666666667899999999999998765556678999999
Q ss_pred HHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHH
Q 008329 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (570)
Q Consensus 425 vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~ 504 (570)
+|++||++|||..+.+|+++.++.+....++++|+|++|||+|+|..+++++.+|+....++|+...... .+..
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~------~~~~ 276 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK------KEKR 276 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc------cccc
Confidence 9999999999999999999999999889999999999999999999999999998888899997543211 1111
Q ss_pred HHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-----hccccccccCCc
Q 008329 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLT 565 (570)
Q Consensus 505 ~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~ 565 (570)
....+++.+.++||.++||+|||++|++.++.|.+|++++|.+|+++++ +|++.|...+|.
T Consensus 277 ~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~ 342 (412)
T PRK05342 277 TEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVE 342 (412)
T ss_pred hhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 1267888999999999999999999999999999999999999999754 899999888875
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=5.7e-37 Score=328.69 Aligned_cols=281 Identities=61% Similarity=0.954 Sum_probs=239.7
Q ss_pred CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCch
Q 008329 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (570)
Q Consensus 264 ~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGK 343 (570)
..++|+++.+.|+++|+||++||+.|..++++||+++......+ .+..+++.++++||+|||||||
T Consensus 64 ~~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~--------------~~~~~~~~~~~iLL~GP~GsGK 129 (413)
T TIGR00382 64 YLPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK--------------SDNGVELSKSNILLIGPTGSGK 129 (413)
T ss_pred CCCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc--------------cccccccCCceEEEECCCCcCH
Confidence 47899999999999999999999999999999999874321000 0012344568999999999999
Q ss_pred HHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 344 TtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
|++|+++|+.++.+|..++++.+...+|+|++.+..+...+..+.+.+..+.++||||||||++.++++.....++++++
T Consensus 130 T~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 99999999999999999999998878999998777777777776666667788999999999999987777778899999
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChH
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~ 503 (570)
++|++||++|||..+++|+.+.++.+....+.++|+|+.|||+|++..+++++.+|.....++|+...... .
T Consensus 210 ~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~--------~ 281 (413)
T TIGR00382 210 GVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK--------S 281 (413)
T ss_pred hHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc--------c
Confidence 99999999999999999999989988889999999999999999999999999877777779997532211 1
Q ss_pred HHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-----hccccccccCCcc
Q 008329 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLTG 566 (570)
Q Consensus 504 ~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~~ 566 (570)
.....+++.+.++||.+++|+|||++|++.++.|.+|++++|.+|++.++ +|++.++..||.-
T Consensus 282 ~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L 349 (413)
T TIGR00382 282 KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVEL 349 (413)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence 12246677888899999999999999999999999999999999999864 9999998888753
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.97 E-value=2.1e-31 Score=284.09 Aligned_cols=224 Identities=44% Similarity=0.682 Sum_probs=186.8
Q ss_pred CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHH
Q 008329 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (570)
Q Consensus 266 ~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTt 345 (570)
.+|++|.+.|+++|+||++||+.|..++++||+|..... ...-++.++++||+||||||||+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~------------------~~~~e~~p~~ILLiGppG~GKT~ 62 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNE------------------ELKDEVTPKNILMIGPTGVGKTE 62 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhcccc------------------ccccccCCceEEEECCCCCCHHH
Confidence 379999999999999999999999999999999753211 11123456899999999999999
Q ss_pred HHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhc---------------------------------ch---
Q 008329 346 LAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS---------------------------------DY--- 389 (570)
Q Consensus 346 LAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a---------------------------------~~--- 389 (570)
+|+++|+.++.+|+.++++.+.+.+|+|.+.+..++.++..+ ..
T Consensus 63 lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~ 142 (441)
T TIGR00390 63 IARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQ 142 (441)
T ss_pred HHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 999999999999999999998877899977667777665544 00
Q ss_pred ------------------------------hH------------------------------------------------
Q 008329 390 ------------------------------NV------------------------------------------------ 391 (570)
Q Consensus 390 ------------------------------~v------------------------------------------------ 391 (570)
.+
T Consensus 143 ~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~ 222 (441)
T TIGR00390 143 TEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKA 222 (441)
T ss_pred cccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHH
Confidence 00
Q ss_pred ---------------------hhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCC
Q 008329 392 ---------------------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (570)
Q Consensus 392 ---------------------~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~ 450 (570)
.....|||||||||++..+. .+.++|+++++||+.||++|||..|++
T Consensus 223 l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~---------- 290 (441)
T TIGR00390 223 LIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT---------- 290 (441)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee----------
Confidence 12478999999999999764 345789999999999999999998876
Q ss_pred CCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcc
Q 008329 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (570)
Q Consensus 451 ~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~R 530 (570)
+..+++|+|++|||+|+|.. +.++| ++|||++|
T Consensus 291 -k~~~v~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 323 (441)
T TIGR00390 291 -KYGMVKTDHILFIAAGAFQL-----------------------------------------AKPSD-----LIPELQGR 323 (441)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12489999999999999863 12334 68999999
Q ss_pred cCeEEecCCCCHHHHHHHhcchh-----hccccccccCCcc
Q 008329 531 FPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLTG 566 (570)
Q Consensus 531 f~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~~ 566 (570)
|++++.|.+|++++|.+||++++ ||+++|+..||.-
T Consensus 324 ~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L 364 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNI 364 (441)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE
Confidence 99999999999999999999997 9999999999863
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.97 E-value=4.9e-31 Score=281.38 Aligned_cols=225 Identities=43% Similarity=0.679 Sum_probs=187.1
Q ss_pred CCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchH
Q 008329 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (570)
Q Consensus 265 ~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKT 344 (570)
..+|+++.+.|+++|+||++||+.|..++++||+|..... +...++.+.++||+||||||||
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~------------------~~~~e~~~~~ILliGp~G~GKT 64 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPE------------------ELRDEVTPKNILMIGPTGVGKT 64 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCc------------------ccccccCCceEEEECCCCCCHH
Confidence 3589999999999999999999999999999988642211 1122344589999999999999
Q ss_pred HHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhc-------------------------------------
Q 008329 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVS------------------------------------- 387 (570)
Q Consensus 345 tLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a------------------------------------- 387 (570)
++|+++|+.++.+|+.++++.+.+.+|+|.+.+..+++++..+
T Consensus 65 ~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~ 144 (443)
T PRK05201 65 EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWG 144 (443)
T ss_pred HHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcc
Confidence 9999999999999999999999988999987667777766555
Q ss_pred ----------------------------------c--h-----h------------------------------------
Q 008329 388 ----------------------------------D--Y-----N------------------------------------ 390 (570)
Q Consensus 388 ----------------------------------~--~-----~------------------------------------ 390 (570)
. . .
T Consensus 145 ~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~ 224 (443)
T PRK05201 145 EEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKI 224 (443)
T ss_pred ccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHH
Confidence 0 0 0
Q ss_pred -------------------Hh-hhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCC
Q 008329 391 -------------------VA-AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (570)
Q Consensus 391 -------------------v~-~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~ 450 (570)
+. +...|||||||||++..+.++ .+.|+++++||+.||++|||..|++
T Consensus 225 l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~---------- 292 (443)
T PRK05201 225 LIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST---------- 292 (443)
T ss_pred HHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee----------
Confidence 11 237899999999999976432 4789999999999999999998876
Q ss_pred CCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcc
Q 008329 451 GDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGR 530 (570)
Q Consensus 451 ~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~R 530 (570)
...+++|+|++|||+|+|.. ..++| ++|||++|
T Consensus 293 -k~~~i~T~~ILFI~~GAF~~-----------------------------------------~kp~D-----lIPEl~GR 325 (443)
T PRK05201 293 -KYGMVKTDHILFIASGAFHV-----------------------------------------SKPSD-----LIPELQGR 325 (443)
T ss_pred -cceeEECCceeEEecCCcCC-----------------------------------------CChhh-----ccHHHhCc
Confidence 12489999999999999862 02234 67999999
Q ss_pred cCeEEecCCCCHHHHHHHhcchh-----hccccccccCCcc
Q 008329 531 FPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLTG 566 (570)
Q Consensus 531 f~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~~ 566 (570)
|++++.|.+|++++|.+||++++ ||+++|+..||.-
T Consensus 326 ~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L 366 (443)
T PRK05201 326 FPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTL 366 (443)
T ss_pred cceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE
Confidence 99999999999999999999988 9999999999853
No 7
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-27 Score=246.36 Aligned_cols=224 Identities=44% Similarity=0.685 Sum_probs=188.1
Q ss_pred CCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchH
Q 008329 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (570)
Q Consensus 265 ~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKT 344 (570)
..+|++|..+|+++|+||++||+.+.-+++|+|.|..-... ..-++.|.++|++||+|+|||
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~------------------lr~EV~PKNILMIGpTGVGKT 64 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEE------------------LRDEVTPKNILMIGPTGVGKT 64 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHH------------------HhhccCccceEEECCCCCcHH
Confidence 46899999999999999999999999999999987543322 234567899999999999999
Q ss_pred HHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhH---------------------------------
Q 008329 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV--------------------------------- 391 (570)
Q Consensus 345 tLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v--------------------------------- 391 (570)
.+||.+|+..+.||+.+.++-+++.||||.++++.+|++...+-..+
T Consensus 65 EIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g 144 (444)
T COG1220 65 EIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWG 144 (444)
T ss_pred HHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 99999999999999999999999999999999888886644210000
Q ss_pred --------------------------------------------------------------------------------
Q 008329 392 -------------------------------------------------------------------------------- 391 (570)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (570)
T Consensus 145 ~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~ 224 (444)
T COG1220 145 QSENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKK 224 (444)
T ss_pred cCcccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHH
Confidence
Q ss_pred ----------------------hhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccC
Q 008329 392 ----------------------AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (570)
Q Consensus 392 ----------------------~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~ 449 (570)
.+...|||||||||+++...+ ..+.+++++++|.-||.++||.+|+. .
T Consensus 225 ~L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T--------K 294 (444)
T COG1220 225 LLIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST--------K 294 (444)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec--------c
Confidence 123689999999999987643 23449999999999999999988765 2
Q ss_pred CCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhc
Q 008329 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (570)
Q Consensus 450 ~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~ 529 (570)
+| .+.|++++||++|+|.- -.|+| |+||+-+
T Consensus 295 yG---~VkTdHILFIasGAFh~-----------------------------------------sKPSD-----LiPELQG 325 (444)
T COG1220 295 YG---PVKTDHILFIASGAFHV-----------------------------------------AKPSD-----LIPELQG 325 (444)
T ss_pred cc---ccccceEEEEecCceec-----------------------------------------CChhh-----cChhhcC
Confidence 22 67899999999999851 13344 7899999
Q ss_pred ccCeEEecCCCCHHHHHHHhcchh-----hccccccccCCc
Q 008329 530 RFPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLT 565 (570)
Q Consensus 530 Rf~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~ 565 (570)
|||+.|.|..|+.+|+.+||+++. ||+.+++-.||.
T Consensus 326 RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~ 366 (444)
T COG1220 326 RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVE 366 (444)
T ss_pred CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCee
Confidence 999999999999999999999998 999999999885
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.9e-26 Score=235.52 Aligned_cols=213 Identities=22% Similarity=0.325 Sum_probs=159.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|+++.+++|+++|....++.. -+..+.++ ++.+||||||||||||+||+|+|+..+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PE------------------lF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~At 212 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPE------------------LFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDAT 212 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHH------------------HHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCce
Confidence 589999999999999986655311 11112222 45799999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHH---Hc
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM---LE 434 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~---LE 434 (570)
|+++.++++. .+|+|+. .+.++++|..|+. ..|+||||||||++..+|.+.+.+.|.. +|.+|+++ ||
T Consensus 213 FIrvvgSElV-qKYiGEG-aRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrE---VQRTmleLL~qlD 283 (406)
T COG1222 213 FIRVVGSELV-QKYIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELLNQLD 283 (406)
T ss_pred EEEeccHHHH-HHHhccc-hHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHH---HHHHHHHHHHhcc
Confidence 9999999999 5799999 8899999998875 6899999999999999998877676644 56555555 45
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHH-HHhcccccccccCchhhhhhhcCCCChHHHHHHHHhh
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT-ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~-l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~ 512 (570)
|+. ...|+-+|+|||..| |+.+ ++.+|||+.|+||+|+.+. ...++..
T Consensus 284 GFD-------------------~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g-----------R~~Il~I 333 (406)
T COG1222 284 GFD-------------------PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG-----------RAEILKI 333 (406)
T ss_pred CCC-------------------CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHH-----------HHHHHHH
Confidence 542 256799999999999 4333 4567999999999999876 2222222
Q ss_pred cChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 513 l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
-...--+...++-+.+.+. -+++|-.|+..|+++.-
T Consensus 334 HtrkM~l~~dvd~e~la~~-----~~g~sGAdlkaictEAG 369 (406)
T COG1222 334 HTRKMNLADDVDLELLARL-----TEGFSGADLKAICTEAG 369 (406)
T ss_pred HhhhccCccCcCHHHHHHh-----cCCCchHHHHHHHHHHh
Confidence 1111111223444555444 37899999999998874
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-23 Score=217.51 Aligned_cols=170 Identities=25% Similarity=0.423 Sum_probs=143.3
Q ss_pred ccCChHHHHHHHHHHHHh--hhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYN--HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~--~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|+|.++||+.|.++|.. .++.+++..+++| ++||++||||||||+||+|+|.+++
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW----------------------kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW----------------------KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhccccc----------------------ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 589999999999999974 4566777777776 7999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..|+.|+.+.++ ++|.|++ ++.++-+|+.|+. ..|++|||||||+|...|+. .+.|+.++++.+.||..|||
T Consensus 271 tTFFNVSsstlt-SKwRGeS-EKlvRlLFemARf----yAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 271 TTFFNVSSSTLT-SKWRGES-EKLVRLLFEMARF----YAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDG 342 (491)
T ss_pred CeEEEechhhhh-hhhccch-HHHHHHHHHHHHH----hCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhc
Confidence 999999999998 7899998 9999999998875 58999999999999988764 46778889999999999997
Q ss_pred CeeeecCCCccccCCCCceEee-cCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQID-TKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~id-tsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
..-+ .+ .+-|.++++||++. +++++ +|||.+.|..++|+.+.
T Consensus 343 ~~~t----------------~e~~k~VmVLAATN~PWdiDEAl-rRRlEKRIyIPLP~~~~ 386 (491)
T KOG0738|consen 343 VQGT----------------LENSKVVMVLAATNFPWDIDEAL-RRRLEKRIYIPLPDAEA 386 (491)
T ss_pred cccc----------------cccceeEEEEeccCCCcchHHHH-HHHHhhheeeeCCCHHH
Confidence 4211 11 22366778899998 55555 57888999999998765
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-23 Score=230.81 Aligned_cols=225 Identities=22% Similarity=0.275 Sum_probs=164.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|++++|++|+++|....+....-.+ .+. -++++||||||||||||++|+++|++.+.+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r-------~Gi------------~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFAR-------FGI------------SPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHH-------hcC------------CCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 5889999999999999754443211111 111 134799999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.+.+.++. +.|+|++ ++.++++|..|+. ..|+|||+||||++..+|++.. + .-.+++.++||..|||.
T Consensus 496 FlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~----~aP~IiFfDEiDsi~~~R~g~~-~--~v~~RVlsqLLtEmDG~- 565 (693)
T KOG0730|consen 496 FLSVKGPELF-SKYVGES-ERAIREVFRKARQ----VAPCIIFFDEIDALAGSRGGSS-S--GVTDRVLSQLLTEMDGL- 565 (693)
T ss_pred eeeccCHHHH-HHhcCch-HHHHHHHHHHHhh----cCCeEEehhhHHhHhhccCCCc-c--chHHHHHHHHHHHcccc-
Confidence 9999999998 6799998 9999999999874 6789999999999999987332 2 33567999999999973
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHH-HhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcCh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l-~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~ 515 (570)
...+++.+|++||.+| ++.++ +.+|+|+.|.+++|+.+. .-++.+.-.+.+.-
T Consensus 566 ------------------e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a-------R~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 566 ------------------EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA-------RLEILKQCAKKMPF 620 (693)
T ss_pred ------------------cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH-------HHHHHHHHHhcCCC
Confidence 2357899999999999 44443 456999999999999875 12222222222222
Q ss_pred hhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh--hccccccccCCc
Q 008329 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR--FYKLPMSLSNLT 565 (570)
Q Consensus 516 ~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~--~y~~~~~~~~v~ 565 (570)
++.. ...++.. .-+.+|-.||..++.+.. +.++.++..-|+
T Consensus 621 ~~~v---dl~~La~------~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~ 663 (693)
T KOG0730|consen 621 SEDV---DLEELAQ------ATEGYSGAEIVAVCQEAALLALRESIEATEIT 663 (693)
T ss_pred Cccc---cHHHHHH------HhccCChHHHHHHHHHHHHHHHHHhccccccc
Confidence 1100 0012222 236788899999998876 666666554444
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6e-23 Score=208.66 Aligned_cols=168 Identities=24% Similarity=0.394 Sum_probs=141.9
Q ss_pred ccCChHHHHHHHHHHHHhh--hhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNH--YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~--~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++.||++|.++|... ++.++...+++| +++||+|||||||+.||+++|.+.+
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw----------------------rgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW----------------------RGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcc----------------------eeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 4899999999999999754 445555555555 7999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..|+.++.++++ ++|+|++ ++.+..+|+.++. .+|+||||||||.++..|+. +....++++...||-.|.|
T Consensus 192 STFFSvSSSDLv-SKWmGES-EkLVknLFemARe----~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 192 STFFSVSSSDLV-SKWMGES-EKLVKNLFEMARE----NKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQG 262 (439)
T ss_pred CceEEeehHHHH-HHHhccH-HHHHHHHHHHHHh----cCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhc
Confidence 999999999999 7899998 9999999998875 68999999999999988664 3344567799999999996
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
. -.+.+.++++.+||.+...+...+|||.+.|..++|..+.
T Consensus 263 V------------------G~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 263 V------------------GNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 303 (439)
T ss_pred c------------------ccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHH
Confidence 2 1256678899999999866666679999999999998765
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.1e-23 Score=220.12 Aligned_cols=226 Identities=20% Similarity=0.292 Sum_probs=170.0
Q ss_pred CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCch
Q 008329 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (570)
Q Consensus 264 ~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGK 343 (570)
....|++....-.++|.|.|+||.+|.+.|. ..+...+-++- +. .-+++|||+|||||||
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrL-------GG------------KLPKGVLLvGPPGTGK 350 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRL-------GG------------KLPKGVLLVGPPGTGK 350 (752)
T ss_pred cccChhhhcccccccccChHHHHHHHHHHHH-HhcCcHHhhhc-------cC------------cCCCceEEeCCCCCch
Confidence 4456666666656679999999999999985 11111111100 00 1247999999999999
Q ss_pred HHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 344 TtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
|+||||+|.+.++||+...++++.++ |||.. .+.+|++|..|+ +..||||||||||++..+|...... ...
T Consensus 351 TlLARAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk----~~APcIIFIDEiDavG~kR~~~~~~---y~k 421 (752)
T KOG0734|consen 351 TLLARAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAK----ARAPCIIFIDEIDAVGGKRNPSDQH---YAK 421 (752)
T ss_pred hHHHHHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHH----hcCCeEEEEechhhhcccCCccHHH---HHH
Confidence 99999999999999999999999864 99998 889999999886 3689999999999999887654322 334
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHH-HhcccccccccCchhhhhhhcCCCC
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRANMRAGGVT 501 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l-~~Rrfd~~I~f~~p~~e~~~~~~~~ 501 (570)
.+.++||..|||+. ....+++|++||+++ +++++ +.+|||..|..+.|+-.-
T Consensus 422 qTlNQLLvEmDGF~-------------------qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~G------- 475 (752)
T KOG0734|consen 422 QTLNQLLVEMDGFK-------------------QNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRG------- 475 (752)
T ss_pred HHHHHHHHHhcCcC-------------------cCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCccc-------
Confidence 58899999999864 244589999999998 55554 467999999999998764
Q ss_pred hHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 502 DAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 502 ~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
+.++....+..+.- +...+|..+.|=. ..++-.||...++...
T Consensus 476 R~eIL~~yl~ki~~----~~~VD~~iiARGT-----~GFsGAdLaNlVNqAA 518 (752)
T KOG0734|consen 476 RTEILKLYLSKIPL----DEDVDPKIIARGT-----PGFSGADLANLVNQAA 518 (752)
T ss_pred HHHHHHHHHhcCCc----ccCCCHhHhccCC-----CCCchHHHHHHHHHHH
Confidence 34444444443332 2247788888753 7889999988887654
No 13
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.5e-23 Score=232.06 Aligned_cols=224 Identities=23% Similarity=0.368 Sum_probs=166.8
Q ss_pred CCCCCCCCCCCCC----ChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCccccc
Q 008329 254 GCWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE 329 (570)
Q Consensus 254 ~~~~~~~~~~~~~----~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~ 329 (570)
.+|++.++..... ....+.+.|.+.|+||++|++.|..+|... .+|...++. +
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra------------RaGL~dp~r-----------P 520 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA------------RAGLGDPNR-----------P 520 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH------------hcCCCCCCC-----------C
Confidence 3688888875433 334578888899999999999999999622 233334432 2
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhC---CcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQ 395 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg---~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~ 395 (570)
-+..||.||+|+|||.||+++|..+. ..++++|++++++ +||||.+....+.+..... .
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~-------P 593 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK-------P 593 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcC-------C
Confidence 36889999999999999999999996 7899999999876 7899998666666665543 4
Q ss_pred CeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHH
Q 008329 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (570)
Q Consensus 396 ~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~ 475 (570)
.+||++|||++++|+ +.+.||++|| +|..++..|+ +++++|.+||+|+|... +.+
T Consensus 594 ySViLlDEIEKAHpd--------------V~nilLQVlD--------dGrLTD~~Gr--~VdFrNtiIImTSN~Gs-~~i 648 (786)
T COG0542 594 YSVILLDEIEKAHPD--------------VFNLLLQVLD--------DGRLTDGQGR--TVDFRNTIIIMTSNAGS-EEI 648 (786)
T ss_pred CeEEEechhhhcCHH--------------HHHHHHHHhc--------CCeeecCCCC--EEecceeEEEEecccch-HHH
Confidence 589999999999998 9999999999 4555566655 89999999999999753 111
Q ss_pred HHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 476 ISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 476 l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
... ..+. .....+...+.+++.+. ..|.|||++|++.++.|.+|+.+++.+|+....
T Consensus 649 ~~~------~~~~---------~~~~~~~~~~~v~~~l~------~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 649 LRD------ADGD---------DFADKEALKEAVMEELK------KHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred Hhh------cccc---------ccchhhhHHHHHHHHHH------hhCCHHHHhhcccEEeccCCCHHHHHHHHHHHH
Confidence 111 0000 00112223334443333 358999999999999999999999999999876
No 14
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.8e-23 Score=222.60 Aligned_cols=215 Identities=20% Similarity=0.295 Sum_probs=160.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|+++++.+|..+|....++... ++.+.+.. +.+|||+||||||||.||+|+|++.+..
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~------------------~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~N 572 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDL------------------FKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGAN 572 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHH------------------HHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCc
Confidence 5899999999999999765554211 11112222 4799999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.+.+.++. ..||||+ ++.+|.+|++|+. ..|||||+||+|+|.+.|+..+ ...+.++.|+||..|||..
T Consensus 573 FisVKGPELl-NkYVGES-ErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~ 643 (802)
T KOG0733|consen 573 FISVKGPELL-NKYVGES-ERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE 643 (802)
T ss_pred eEeecCHHHH-HHHhhhH-HHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc
Confidence 9999999998 5699998 9999999999975 6899999999999999987644 4556789999999999732
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCCh-H-HHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcCh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-E-KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e-~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~ 515 (570)
+..++.+|++||.+|+ + .+++.+|+|..+..+.|..+. ...++....+
T Consensus 644 -------------------~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e-----------R~~ILK~~tk 693 (802)
T KOG0733|consen 644 -------------------ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE-----------RVAILKTITK 693 (802)
T ss_pred -------------------cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH-----------HHHHHHHHhc
Confidence 4566889999999993 3 345677999999999887765 2233332222
Q ss_pred --hhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 516 --SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 516 --~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.--+.....-+-+.|. -....|+-.||..++.+..
T Consensus 694 n~k~pl~~dVdl~eia~~---~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 694 NTKPPLSSDVDLDEIARN---TKCEGFTGADLAALVREAS 730 (802)
T ss_pred cCCCCCCcccCHHHHhhc---ccccCCchhhHHHHHHHHH
Confidence 0000011222223332 2346889999998888765
No 15
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.9e-23 Score=226.19 Aligned_cols=217 Identities=24% Similarity=0.264 Sum_probs=163.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|.+++|.+|.+.|....++..-... +. .+..++|||||||||||.+|+|+|.++...
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfss--------gl------------rkRSGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSS--------GL------------RKRSGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhc--------cc------------cccceeEEECCCCCchHHHHHHHHhhceee
Confidence 4899999999999999865544222111 11 123689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.+.+.++.. .||||+ +..+|+.|++|+. +.|||||+||+|+++|.|...++++.+.++ +..+||..|||-.
T Consensus 733 FlSVKGPELLN-MYVGqS-E~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDgls 805 (953)
T KOG0736|consen 733 FLSVKGPELLN-MYVGQS-EENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDGLS 805 (953)
T ss_pred EEeecCHHHHH-HHhcch-HHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhccc
Confidence 99999999985 499999 8999999999985 799999999999999999999999888866 8889999999742
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCChH--HHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcCh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIE--KTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe--~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~ 515 (570)
. -+.+.+-+|.|||.+|+. ..++.+|||+-++.+.+..+ +...++++.+..
T Consensus 806 ~-----------------~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~----------esk~~vL~AlTr 858 (953)
T KOG0736|consen 806 D-----------------SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDA----------ESKLRVLEALTR 858 (953)
T ss_pred C-----------------CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccH----------HHHHHHHHHHHH
Confidence 1 035668889999999953 34457799999888765433 233444444433
Q ss_pred hhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 516 SDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 516 ~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.--++.+.+ -|+..+.+ ..++-.|+..|+.+..
T Consensus 859 kFkLdedVdL~eiAk~cp-----~~~TGADlYsLCSdA~ 892 (953)
T KOG0736|consen 859 KFKLDEDVDLVEIAKKCP-----PNMTGADLYSLCSDAM 892 (953)
T ss_pred HccCCCCcCHHHHHhhCC-----cCCchhHHHHHHHHHH
Confidence 111111221 45556554 6788888888887653
No 16
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.3e-21 Score=211.26 Aligned_cols=173 Identities=25% Similarity=0.378 Sum_probs=136.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|.+....+|.+++.. .++ + +.+....+ .+++++||+||||||||.||++||++++.|
T Consensus 191 diGG~d~~~~el~~li~~-i~~-------P-----------e~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vP 250 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIH-IKH-------P-----------EVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVP 250 (802)
T ss_pred hccChHHHHHHHHHHHHH-hcC-------c-----------hhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCc
Confidence 489999999999998852 221 1 11111111 245899999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.++++++. +|+.|++ ++.++++|..|.. ..|||+||||||++.++|+.. +++. .+++..+||..||+-.
T Consensus 251 f~~isApeiv-SGvSGES-EkkiRelF~~A~~----~aPcivFiDeIDAI~pkRe~a--qreM-ErRiVaQLlt~mD~l~ 321 (802)
T KOG0733|consen 251 FLSISAPEIV-SGVSGES-EKKIRELFDQAKS----NAPCIVFIDEIDAITPKREEA--QREM-ERRIVAQLLTSMDELS 321 (802)
T ss_pred eEeecchhhh-cccCccc-HHHHHHHHHHHhc----cCCeEEEeecccccccchhhH--HHHH-HHHHHHHHHHhhhccc
Confidence 9999999999 7999998 8999999999875 689999999999999998863 3444 4568999999999632
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
. . ..+...+++|+|||.+| ++.+++ .+|||+.|..+.|++..
T Consensus 322 ~-------~--------~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 322 N-------E--------KTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred c-------c--------ccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 1 0 01245699999999999 666554 34999999999998765
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.1e-21 Score=216.37 Aligned_cols=172 Identities=27% Similarity=0.381 Sum_probs=137.7
Q ss_pred cccCChHHHHHHHHHHHH-hhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 277 KFVIGQERAKKVLSVAVY-NHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~-~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
++|+|+++||++|.+.|. ..-+..|.....+ .++++||+||||||||.||+|+|.+.+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAK---------------------iPkGvLL~GPPGTGKTLLAKAiAGEAg 369 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAK---------------------IPKGVLLVGPPGTGKTLLAKAIAGEAG 369 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCc---------------------CcCceEEECCCCCcHHHHHHHHhcccC
Confidence 359999999999999995 1111122222222 237999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh-cccCCCCchHHHHHHHHHHHc
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES-LNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~-~~~~~~~~~e~vq~~LL~~LE 434 (570)
.||+.++++++.+. ++|.. ...++++|..++. ..|+|+||||||++...|.. ...+.+.++|...|+||..||
T Consensus 370 VPF~svSGSEFvE~-~~g~~-asrvr~lf~~ar~----~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 370 VPFFSVSGSEFVEM-FVGVG-ASRVRDLFPLARK----NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred CceeeechHHHHHH-hcccc-hHHHHHHHHHhhc----cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 99999999999964 77776 7789999998874 68999999999999998852 234566677889999999999
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCCh-HHH-HHhcccccccccCchhhhh
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKT-ISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e~~-l~~Rrfd~~I~f~~p~~e~ 494 (570)
|+. .+++++++++||.+|+ +.+ ++.+|||+.|..+.|+...
T Consensus 444 gf~-------------------~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~ 486 (774)
T KOG0731|consen 444 GFE-------------------TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKG 486 (774)
T ss_pred CCc-------------------CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhh
Confidence 853 2467999999999994 333 3466999999999998754
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.85 E-value=3.8e-21 Score=192.76 Aligned_cols=168 Identities=29% Similarity=0.408 Sum_probs=136.0
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
++|+||++||+.-+..+. ...+ ...=..| .+++|||+||||||||++|+++|++...
T Consensus 121 ddViGqEeAK~kcrli~~-yLen--Pe~Fg~W--------------------APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME-YLEN--PERFGDW--------------------APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred hhhhchHHHHHHHHHHHH-HhhC--hHHhccc--------------------CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 459999999997665542 1110 0001122 2479999999999999999999999999
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~ 436 (570)
|++.+.++++. ..+||.. .+.++++++.+.. ..|||+||||+|++.-+|......+|++ .+.|+||..|||.
T Consensus 178 p~l~vkat~li-GehVGdg-ar~Ihely~rA~~----~aPcivFiDE~DAiaLdRryQelRGDVs--EiVNALLTelDgi 249 (368)
T COG1223 178 PLLLVKATELI-GEHVGDG-ARRIHELYERARK----AAPCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGI 249 (368)
T ss_pred ceEEechHHHH-HHHhhhH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhhhhhHHHhcccHH--HHHHHHHHhccCc
Confidence 99999999987 4689987 7888999888763 7899999999999999998888777764 3799999999973
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhh
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
. ....++.||+||.+++.+..-+.||...|+|.+|..+.
T Consensus 250 ~-------------------eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eE 288 (368)
T COG1223 250 K-------------------ENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEE 288 (368)
T ss_pred c-------------------cCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHH
Confidence 1 34458899999999987888888999999999998764
No 19
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-20 Score=215.98 Aligned_cols=232 Identities=20% Similarity=0.276 Sum_probs=159.6
Q ss_pred CCCCCCCCCCC----CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008329 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (570)
Q Consensus 255 ~~~~~~~~~~~----~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~ 330 (570)
+|.+.+..... .....+.+.|.+.|+||++|++.|..++..++..+.. + ..+.
T Consensus 432 ~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~------------~-----------~kp~ 488 (758)
T PRK11034 432 RIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGH------------E-----------HKPV 488 (758)
T ss_pred HHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccC------------C-----------CCCc
Confidence 56666655432 2344578888999999999999999999643332111 0 0123
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcCeEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gIL 399 (570)
+.+||+||||||||++|+++|+.++.+++.++++++.+ .+|+|.+....+.+.+. ....+||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~-------~~p~sVl 561 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAVL 561 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH-------hCCCcEE
Confidence 57899999999999999999999999999999988653 34555442333333322 2356899
Q ss_pred EEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhc
Q 008329 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (570)
Q Consensus 400 fIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~R 479 (570)
||||||++.+. +++.|+++||+..++ ...+ ..++.+|++||+|+|.. .+...
T Consensus 562 llDEieka~~~--------------v~~~LLq~ld~G~lt--------d~~g--~~vd~rn~iiI~TsN~g-~~~~~--- 613 (758)
T PRK11034 562 LLDEIEKAHPD--------------VFNLLLQVMDNGTLT--------DNNG--RKADFRNVVLVMTTNAG-VRETE--- 613 (758)
T ss_pred EeccHhhhhHH--------------HHHHHHHHHhcCeee--------cCCC--ceecCCCcEEEEeCCcC-HHHHh---
Confidence 99999999877 999999999954432 1122 26789999999999964 22222
Q ss_pred ccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-hcccc
Q 008329 480 RQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-FYKLP 558 (570)
Q Consensus 480 rfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-~y~~~ 558 (570)
...++|..... .....+ .++..|.|||++|++.++.|.+|+++++.+|+.... ++.+.
T Consensus 614 --~~~~g~~~~~~-------------~~~~~~------~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~ 672 (758)
T PRK11034 614 --RKSIGLIHQDN-------------STDAME------EIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ 672 (758)
T ss_pred --hcccCcccchh-------------hHHHHH------HHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 22355542111 011111 123458999999999999999999999999998665 55555
Q ss_pred ccccCCc
Q 008329 559 MSLSNLT 565 (570)
Q Consensus 559 ~~~~~v~ 565 (570)
++..|++
T Consensus 673 l~~~~i~ 679 (758)
T PRK11034 673 LDQKGVS 679 (758)
T ss_pred HHHCCCC
Confidence 5545543
No 20
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.1e-20 Score=209.42 Aligned_cols=214 Identities=22% Similarity=0.266 Sum_probs=157.9
Q ss_pred ccCChHHHHHHHHHHHHhh-hhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 278 FVIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~-~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
+|.|.+++|++|.+.|.-- -+..+.....+ -+.++||+||||||||+||+++|.+.+.
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGak---------------------iPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAK---------------------IPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccc---------------------cccceeEecCCCCCcHHHHHHHhcccCC
Confidence 4899999999999999511 11112222211 2379999999999999999999999999
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~ 436 (570)
||+.++++++.++ |||.. .+.+|++|..+.- ..|||+||||||++...|..+-++++..+|.+.++||..|||+
T Consensus 210 PFf~iSGS~FVem-fVGvG-AsRVRdLF~qAkk----~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 210 PFFSISGSDFVEM-FVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred Cceeccchhhhhh-hcCCC-cHHHHHHHHHhhc----cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 9999999999964 89988 7889999998863 5789999999999999987666667777888999999999975
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-h-HHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcC
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-I-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-L-e~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~ 514 (570)
. ..+.+++|++||.+| + ..+++.+|||+.|-.+.|+-.. .++++..--
T Consensus 284 ~-------------------~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g-----------Re~IlkvH~ 333 (596)
T COG0465 284 G-------------------GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG-----------REQILKVHA 333 (596)
T ss_pred C-------------------CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh-----------HHHHHHHHh
Confidence 2 234588999999999 4 3444577999999999998544 122222110
Q ss_pred hhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 515 ~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..--++...+...+.|. .+.++-.+|..++++..
T Consensus 334 ~~~~l~~~Vdl~~iAr~-----tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 334 KNKPLAEDVDLKKIARG-----TPGFSGADLANLLNEAA 367 (596)
T ss_pred hcCCCCCcCCHHHHhhh-----CCCcccchHhhhHHHHH
Confidence 00001112333334443 47788888888887765
No 21
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.2e-20 Score=186.70 Aligned_cols=173 Identities=24% Similarity=0.390 Sum_probs=136.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|.+-.|++++++|...... ++.... + -+++++|++||||||||+||+++|+..-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qig--------------------i-dpprgvllygppg~gktml~kava~~t~ 214 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIG--------------------I-DPPRGVLLYGPPGTGKTMLAKAVANHTT 214 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhC--------------------C-CCCcceEEeCCCCCcHHHHHHHHhhccc
Confidence 4899999999999999744332 222221 1 1458999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..|+++.++++. .+|.|+. -+-+++.|.-++. ..|+||||||||++..+|-+...+.|..-.++.-.||..|||
T Consensus 215 a~firvvgsefv-qkylgeg-prmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 215 AAFIRVVGSEFV-QKYLGEG-PRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred hheeeeccHHHH-HHHhccC-cHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 999999999998 5799998 5678899887764 589999999999999999887777665434444555556666
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHH-HHhcccccccccCchhhhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKT-ISERRQDSSIGFGAPVRANMR 496 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~-l~~Rrfd~~I~f~~p~~e~~~ 496 (570)
+. .+.|+-+|++||..| ++.+ ++.+|.|+.|+|+.|++..-+
T Consensus 289 fd-------------------q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkr 332 (408)
T KOG0727|consen 289 FD-------------------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332 (408)
T ss_pred cC-------------------cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhh
Confidence 42 367889999999988 5444 456799999999999987644
No 22
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.82 E-value=1.7e-19 Score=207.12 Aligned_cols=219 Identities=22% Similarity=0.313 Sum_probs=153.0
Q ss_pred CCCCCCCC----CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCC
Q 008329 256 WGGSNLGN----KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS 331 (570)
Q Consensus 256 ~~~~~~~~----~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~ 331 (570)
|.+.+... +......+.+.|.+.|+||+++++.|..++......+ ..+. .+.+
T Consensus 429 ~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~------------~~~~-----------~p~~ 485 (731)
T TIGR02639 429 MAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGL------------GNPN-----------KPVG 485 (731)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCC------------CCCC-----------CCce
Confidence 55555432 2335567888999999999999999999885222111 0000 1225
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcCeEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILf 400 (570)
.+||+||+|||||++|+++|+.++.+++.++++++.+ .+|+|.+....+.+.+.. ...+||+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-------~p~~Vvl 558 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-------HPHCVLL 558 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-------CCCeEEE
Confidence 6889999999999999999999999999999988643 456776544444444332 3568999
Q ss_pred EcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcc
Q 008329 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (570)
Q Consensus 401 IDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rr 480 (570)
|||||++.++ +++.|+++||+..++ +.. ...++.+|++||+|+|... . .+
T Consensus 559 lDEieka~~~--------------~~~~Ll~~ld~g~~~--------d~~--g~~vd~~~~iii~Tsn~g~-~-~~---- 608 (731)
T TIGR02639 559 LDEIEKAHPD--------------IYNILLQVMDYATLT--------DNN--GRKADFRNVILIMTSNAGA-S-EM---- 608 (731)
T ss_pred EechhhcCHH--------------HHHHHHHhhccCeee--------cCC--CcccCCCCCEEEECCCcch-h-hh----
Confidence 9999999887 999999999954432 222 2367899999999999752 1 11
Q ss_pred cccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 481 QDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 481 fd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
....++|.... ..+.+.. .++..|.|||++||+.++.|.+|+++++.+|+....
T Consensus 609 ~~~~~~f~~~~-------------~~~~~~~------~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 609 SKPPIGFGSEN-------------VESKSDK------AIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred hhccCCcchhh-------------hHHHHHH------HHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 11234553211 1111222 223458899999999999999999999999998765
No 23
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.81 E-value=5e-19 Score=205.59 Aligned_cols=232 Identities=25% Similarity=0.357 Sum_probs=156.0
Q ss_pred CCCCCCCCCCCC----ChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008329 255 CWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (570)
Q Consensus 255 ~~~~~~~~~~~~----~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~ 330 (570)
.|++.+...... ....+.+.|.+.|+||++|++.|..++.....++.. +. .+.
T Consensus 483 ~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~------------~~-----------~p~ 539 (821)
T CHL00095 483 AWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKN------------PN-----------RPI 539 (821)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccC------------CC-----------CCc
Confidence 567776655332 244688899999999999999999999644332211 10 112
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~ 396 (570)
+.+||+||+|||||++|+++|+.+ ..+++.++++++.+ .+|+|.+....+.+.+.. ...
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-------~p~ 612 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK-------KPY 612 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh-------CCC
Confidence 467899999999999999999987 35788899887632 456766533334333322 344
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
+||+|||+|++.+. +++.|+++||+..+ ....+ ..++.+|++||+|+|... +.+
T Consensus 613 ~VvllDeieka~~~--------------v~~~Llq~le~g~~--------~d~~g--~~v~~~~~i~I~Tsn~g~--~~i 666 (821)
T CHL00095 613 TVVLFDEIEKAHPD--------------IFNLLLQILDDGRL--------TDSKG--RTIDFKNTLIIMTSNLGS--KVI 666 (821)
T ss_pred eEEEECChhhCCHH--------------HHHHHHHHhccCce--------ecCCC--cEEecCceEEEEeCCcch--HHH
Confidence 89999999999887 99999999994332 22222 378889999999999853 222
Q ss_pred HhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 477 ~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
. .....++|....... .+.....+.+.+. .++.+ .|.|||++|++.++.|.+|+.+++.+|+....
T Consensus 667 ~--~~~~~~gf~~~~~~~-------~~~~~~~~~~~~~-~~~~~-~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 667 E--TNSGGLGFELSENQL-------SEKQYKRLSNLVN-EELKQ-FFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred H--hhccccCCccccccc-------ccccHHHHHHHHH-HHHHH-hcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 2 112345665321110 0000112222222 22333 48999999999999999999999999998765
No 24
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.81 E-value=9.4e-20 Score=174.80 Aligned_cols=164 Identities=40% Similarity=0.600 Sum_probs=118.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC----cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~----~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~ 406 (570)
.++||.||+|||||.+|+++|+.+.. +++.++++++.+ +++....+.++...+...+.....+||||||||+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 68899999999999999999999985 999999999875 2333344455555554445556667999999999
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccc
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~ 486 (570)
+.+. .+.+.+++++.+|+.||++||+..++ ..++ ..++++|++||+|+|+.........+.. .
T Consensus 80 a~~~---~~~~~~v~~~~V~~~LL~~le~g~~~--------d~~g--~~vd~~n~ifI~Tsn~~~~~~~~~~~~~----~ 142 (171)
T PF07724_consen 80 AHPS---NSGGADVSGEGVQNSLLQLLEGGTLT--------DSYG--RTVDTSNIIFIMTSNFGAEEIIDASRSG----E 142 (171)
T ss_dssp CSHT---TTTCSHHHHHHHHHHHHHHHHHSEEE--------ETTC--CEEEGTTEEEEEEESSSTHHHHHCHHHC----T
T ss_pred cccc---ccccchhhHHHHHHHHHHHhccccee--------cccc--eEEEeCCceEEEecccccchhhhhhccc----c
Confidence 9986 45678889999999999999976554 2222 5899999999999999875433321111 0
Q ss_pred cCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeE
Q 008329 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVL 534 (570)
Q Consensus 487 f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~i 534 (570)
. ..........+++++++.|||++||+.+
T Consensus 143 -------------~------~~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 143 -------------A------IEQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp -------------C------CHHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred -------------c------cHHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 0 0011112235677889999999999875
No 25
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=4e-19 Score=176.51 Aligned_cols=170 Identities=29% Similarity=0.439 Sum_probs=109.9
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.|++ ++||++.+..+..++.....+ . ..-.|+||+||||+||||||+.||++
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa~~r-------~--------------------~~l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAAKKR-------G--------------------EALDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHHHCT-------T--------------------S---EEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHH-ccCcHHHHhhhHHHHHHHHhc-------C--------------------CCcceEEEECCCccchhHHHHHHHhc
Confidence 3444 799999999988777522221 0 01268999999999999999999999
Q ss_pred hCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHH
Q 008329 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (570)
Q Consensus 354 lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~L 433 (570)
++.++...++..+... + + +..++... ..+.|||||||+++.+. +|+.|+..|
T Consensus 74 ~~~~~~~~sg~~i~k~---~-d----l~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~Llpam 125 (233)
T PF05496_consen 74 LGVNFKITSGPAIEKA---G-D----LAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAM 125 (233)
T ss_dssp CT--EEEEECCC--SC---H-H----HHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHH
T ss_pred cCCCeEeccchhhhhH---H-H----HHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHh
Confidence 9999998887654321 1 1 22222221 35679999999999987 999999999
Q ss_pred cCCeeeec-CCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhh
Q 008329 434 EGTVVNVP-EKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET 512 (570)
Q Consensus 434 Eg~~v~ip-e~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~ 512 (570)
|++.+.+. ..| ...+.+.++...+.+|.||+...
T Consensus 126 Ed~~idiiiG~g----~~ar~~~~~l~~FTligATTr~g----------------------------------------- 160 (233)
T PF05496_consen 126 EDGKIDIIIGKG----PNARSIRINLPPFTLIGATTRAG----------------------------------------- 160 (233)
T ss_dssp HCSEEEEEBSSS----SS-BEEEEE----EEEEEESSGC-----------------------------------------
T ss_pred ccCeEEEEeccc----cccceeeccCCCceEeeeecccc-----------------------------------------
Confidence 98876431 222 23345677888888898887532
Q ss_pred cChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 513 l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
-+.+.+.+||.++..++.|+++||.+|+.+..
T Consensus 161 ---------~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 161 ---------LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp ---------CTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred ---------ccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 16689999999999999999999999998643
No 26
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=180.61 Aligned_cols=171 Identities=25% Similarity=0.400 Sum_probs=136.0
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
+.|.|.+..++++.+.+....++.. -++...+. .+.++||+||||||||.||+++|....+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPE------------------LF~aLGIa-QPKGvlLygppgtGktLlaraVahht~c 207 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPE------------------LFEALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDC 207 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHH------------------HHHhcCCC-CCcceEEecCCCCchhHHHHHHHhhcce
Confidence 4688999999999999975544311 11111122 3478999999999999999999999999
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc--
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-- 434 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE-- 434 (570)
.|++++++++. .+|+|+. .+.++++|..++. ..|+|||+||||++...|.+.+.+.|.. +|.++|+++.
T Consensus 208 ~firvsgselv-qk~igeg-srmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdse---vqrtmlellnql 278 (404)
T KOG0728|consen 208 TFIRVSGSELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSE---VQRTMLELLNQL 278 (404)
T ss_pred EEEEechHHHH-HHHhhhh-HHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHH---HHHHHHHHHHhc
Confidence 99999999999 5799998 7889999988765 5889999999999999988777776643 6766666664
Q ss_pred -CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHH--HHhcccccccccCchhhhh
Q 008329 435 -GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT--ISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 435 -g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~--l~~Rrfd~~I~f~~p~~e~ 494 (570)
|+. .++|+-+|++||..|+.+. ++.+|.|+.|+||.|+.+.
T Consensus 279 dgfe-------------------atknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 279 DGFE-------------------ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred cccc-------------------cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 431 4889999999999994333 3466999999999998765
No 27
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.8e-19 Score=194.52 Aligned_cols=168 Identities=26% Similarity=0.397 Sum_probs=136.2
Q ss_pred ccCChHHHHHHHHHHHHh--hhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYN--HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~--~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|..++|+.|.+.+.. .|..++.....|. ..++||+||||||||.||.++|...+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~---------------------~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---------------------RTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCccc---------------------ccceEEECCCCCcHHHHHHHHHhhCC
Confidence 489999999999999973 4555555544332 36899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..|+.+.+.++. .+|+|.+ +..+|++|.+|.. ++|||||+||+|+++|+|+..+.+. + +++.|+||..|||
T Consensus 727 ~~fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGV--T-DRVVNQlLTelDG 797 (952)
T KOG0735|consen 727 LRFISVKGPELL-SKYIGAS-EQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGV--T-DRVVNQLLTELDG 797 (952)
T ss_pred eeEEEecCHHHH-HHHhccc-HHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCCCCc--h-HHHHHHHHHhhcc
Confidence 999999999988 6899998 8999999999864 7999999999999999986544333 2 4599999999997
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCCh-HHH-HHhcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKT-ISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e~~-l~~Rrfd~~I~f~~p~~e~ 494 (570)
.. -.+.+.++++|..+|+ +++ ++.+|+|+.+.-+.|+...
T Consensus 798 ~E-------------------gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 798 AE-------------------GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred cc-------------------ccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 42 1345778888888884 333 4567999999888887654
No 28
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=1.8e-18 Score=178.58 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=134.3
Q ss_pred CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhh-hhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCc
Q 008329 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (570)
Q Consensus 264 ~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~-~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTG 342 (570)
.....+++.+.|++.++|++.+|++|.+.+.... .++.. ..|...+ .+..++||+||||||
T Consensus 10 ~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~------~~g~~~~------------~~~~~ill~G~pGtG 71 (287)
T CHL00181 10 EKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK------NLGLTSS------------NPGLHMSFTGSPGTG 71 (287)
T ss_pred cccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH------HcCCCCC------------CCCceEEEECCCCCC
Confidence 3456688999999889999999999998875311 11111 1111111 123579999999999
Q ss_pred hHHHHHHHHHHh-------CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcc
Q 008329 343 KTLLAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (570)
Q Consensus 343 KTtLAraLA~~l-------g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~ 415 (570)
||++|+++|+.+ ..+++.++++++. ..|+|+. .....+.+..+ .++||||||+|.+...+.
T Consensus 72 KT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-~~~~g~~-~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~--- 139 (287)
T CHL00181 72 KTTVALKMADILYKLGYIKKGHLLTVTRDDLV-GQYIGHT-APKTKEVLKKA-------MGGVLFIDEAYYLYKPDN--- 139 (287)
T ss_pred HHHHHHHHHHHHHHcCCCCCCceEEecHHHHH-HHHhccc-hHHHHHHHHHc-------cCCEEEEEccchhccCCC---
Confidence 999999999876 2368888888876 4578876 33445555443 568999999999864321
Q ss_pred cCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhh
Q 008329 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (570)
Q Consensus 416 ~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~ 495 (570)
..+ .+..+++.|++.||+. ..++++|++|+...++...
T Consensus 140 -~~~-~~~e~~~~L~~~me~~---------------------~~~~~vI~ag~~~~~~~~~------------------- 177 (287)
T CHL00181 140 -ERD-YGSEAIEILLQVMENQ---------------------RDDLVVIFAGYKDRMDKFY------------------- 177 (287)
T ss_pred -ccc-hHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH-------------------
Confidence 122 2345899999999841 3457888887653322211
Q ss_pred hcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 496 ~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..+|+|.+||+.++.|++++.+|+.+|+....
T Consensus 178 --------------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 178 --------------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIML 209 (287)
T ss_pred --------------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHH
Confidence 14599999999999999999999999988764
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=1.9e-18 Score=190.34 Aligned_cols=173 Identities=23% Similarity=0.320 Sum_probs=128.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA 351 (570)
.+++ |+|++++|+++.+.+.. .++ .+.... . ..+.++||+||||||||++|+++|
T Consensus 53 ~~~d-i~g~~~~k~~l~~~~~~-l~~~~~~~~~g--------------------~-~~~~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 53 TFKD-VAGIDEAKEELMEIVDF-LKNPSKFTKLG--------------------A-KIPKGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CHHH-hCCHHHHHHHHHHHHHH-HHCHHHHHhcC--------------------C-CCCCcEEEECCCCCCHHHHHHHHH
Confidence 3444 89999999999988752 221 111110 0 123689999999999999999999
Q ss_pred HHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHH
Q 008329 352 RYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (570)
Q Consensus 352 ~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~ 431 (570)
+.++.+++.++++++. ..++|+. .+.++++|..+.. ..|+||||||||.+..++.....+.+...+.+.+.||.
T Consensus 110 ~~~~~~~~~i~~~~~~-~~~~g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 110 GEAGVPFFSISGSDFV-EMFVGVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred HHcCCCeeeccHHHHH-HHHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHh
Confidence 9999999999998876 4577776 6678888877643 57899999999999987765333334445568888999
Q ss_pred HHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 432 ~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
.||+.. ...++++|++||.++ +++++.+ +||+..|.++.|+.+.
T Consensus 184 ~~d~~~-------------------~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 184 EMDGFG-------------------TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred hhcccc-------------------CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 998531 234588899999887 6666554 5999999999998754
No 30
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.5e-18 Score=190.79 Aligned_cols=214 Identities=23% Similarity=0.255 Sum_probs=152.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
++.|.+.+|+.+.+.+....++...... .+. .++.++||+||||||||++|+++|..++.+
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~-------~~~------------~~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRK-------LGL------------RPPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHh-------cCC------------CCCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 3789999999999999765554322111 000 123589999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.++++++. ++|+|+. ++.++++|..+. ...++||||||+|++.+.|+... +.+.+++.+.||..|+|..
T Consensus 304 fi~v~~~~l~-sk~vGes-ek~ir~~F~~A~----~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e 374 (494)
T COG0464 304 FISVKGSELL-SKWVGES-EKNIRELFEKAR----KLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIE 374 (494)
T ss_pred EEEeeCHHHh-ccccchH-HHHHHHHHHHHH----cCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCC
Confidence 9999999888 7899998 999999999886 36899999999999999876432 2223579999999998631
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhhhhcCCCChHHHHHHHHhhcCh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~ 515 (570)
..+++++|++||.++ +++++.+ +||+..|.++.|+.+.. .+-+...+..
T Consensus 375 -------------------~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r----------~~i~~~~~~~ 425 (494)
T COG0464 375 -------------------KAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER----------LEIFKIHLRD 425 (494)
T ss_pred -------------------ccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH----------HHHHHHHhcc
Confidence 356688899999999 4444432 49999999999998651 1222222221
Q ss_pred hhH-HhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 516 SDL-IAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 516 ~dl-~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.+. +...+.-+.+.+ ..+.++..|+..++.+..
T Consensus 426 ~~~~~~~~~~~~~l~~-----~t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 426 KKPPLAEDVDLEELAE-----ITEGYSGADIAALVREAA 459 (494)
T ss_pred cCCcchhhhhHHHHHH-----HhcCCCHHHHHHHHHHHH
Confidence 000 000111222222 234589999999988865
No 31
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=1.9e-18 Score=198.54 Aligned_cols=169 Identities=24% Similarity=0.356 Sum_probs=132.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++.+|+.|.+.+....++ ++..... ..+.++||+||||||||++|+++|.+++
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~---------------------~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGI---------------------RPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCC---------------------CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999998743332 2211111 1236899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. ..|+|++ ++.++++|..+.. ..++||||||||++.+.|+... .....+++.++||..|+|
T Consensus 513 ~~fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg 584 (733)
T TIGR01243 513 ANFIAVRGPEIL-SKWVGES-EKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDG 584 (733)
T ss_pred CCEEEEehHHHh-hcccCcH-HHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhc
Confidence 999999999987 5799998 7889999988753 5789999999999998765322 122345688999999996
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
. ...+++++|+|||.++ +++++.+ +||+..|.++.|+.+.
T Consensus 585 ~-------------------~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~ 626 (733)
T TIGR01243 585 I-------------------QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA 626 (733)
T ss_pred c-------------------cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHH
Confidence 2 1345789999999988 5555554 6999999999998765
No 32
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=3.9e-18 Score=187.41 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=141.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|++.+|+.|.+.....-.. .+ . .+. ..++++||+||||||||++|+++|+.++.+
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~----~~-~-----~gl------------~~pkGILL~GPpGTGKTllAkaiA~e~~~~ 286 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQ----AS-N-----YGL------------PTPRGLLLVGIQGTGKSLTAKAIANDWQLP 286 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHH----HH-h-----cCC------------CCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999887654311110 00 0 011 123789999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++.+. .+|+|++ +..++++|..+.. ..|+||||||||++...+...+. .....++...|+..|++
T Consensus 287 ~~~l~~~~l~-~~~vGes-e~~l~~~f~~A~~----~~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~-- 356 (489)
T CHL00195 287 LLRLDVGKLF-GGIVGES-ESRMRQMIRIAEA----LSPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE-- 356 (489)
T ss_pred EEEEEhHHhc-ccccChH-HHHHHHHHHHHHh----cCCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc--
Confidence 9999999887 5799997 7788999876643 58999999999999765432221 12234577888888873
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhcCh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~ 515 (570)
..+++.+|+|+|..+ +++++. .+|||..+.++.|+.+. ...+....+....+
T Consensus 357 -------------------~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e-------R~~Il~~~l~~~~~ 410 (489)
T CHL00195 357 -------------------KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE-------REKIFKIHLQKFRP 410 (489)
T ss_pred -------------------CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH-------HHHHHHHHHhhcCC
Confidence 134578889998877 565554 47999999999998765 22333333333222
Q ss_pred hhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 516 SDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 516 ~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.... .+. ..+..+ -..++..||.+++.+..
T Consensus 411 ~~~~--~~dl~~La~~------T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 411 KSWK--KYDIKKLSKL------SNKFSGAEIEQSIIEAM 441 (489)
T ss_pred Cccc--ccCHHHHHhh------cCCCCHHHHHHHHHHHH
Confidence 1100 011 122221 25788888887776654
No 33
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=9.3e-19 Score=176.16 Aligned_cols=170 Identities=24% Similarity=0.338 Sum_probs=134.5
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCccc-ccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~-i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.+|.|+.+.++.|++.|.....+.... +++. -++.++|++||||||||.+||++|+..+
T Consensus 177 ~dvggckeqieklrevve~pll~perf--------------------v~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERF--------------------VNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHH--------------------hhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 358999999999999997444321111 1111 1457999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc-
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE- 434 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE- 434 (570)
.-|+++-++++. .+|+|+. .+-++++|+.++. .+-||||+||||++...|-+.+.+.|.. +|.++|+++.
T Consensus 237 acfirvigselv-qkyvgeg-armvrelf~mart----kkaciiffdeidaiggarfddg~ggdne---vqrtmleli~q 307 (435)
T KOG0729|consen 237 ACFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDNE---VQRTMLELINQ 307 (435)
T ss_pred ceEEeehhHHHH-HHHhhhh-HHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcHH---HHHHHHHHHHh
Confidence 999999999999 5799998 7889999998874 5679999999999999988776666643 7877877775
Q ss_pred --CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHH-HHHhcccccccccCchhhhh
Q 008329 435 --GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 435 --g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~-~l~~Rrfd~~I~f~~p~~e~ 494 (570)
|+ ++ ..|+-+++++|.++ ++. +++.+|.|+.++|++|+.+.
T Consensus 308 ldgf-----------dp--------rgnikvlmatnrpdtldpallrpgrldrkvef~lpdleg 352 (435)
T KOG0729|consen 308 LDGF-----------DP--------RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEG 352 (435)
T ss_pred ccCC-----------CC--------CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccc
Confidence 32 22 45688888999988 443 44577999999999999875
No 34
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=4.4e-18 Score=175.27 Aligned_cols=192 Identities=20% Similarity=0.293 Sum_probs=135.5
Q ss_pred CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhh-hhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCc
Q 008329 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHY-MRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSG 342 (570)
Q Consensus 264 ~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~-~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTG 342 (570)
+....+++.+.|++.++|++.+|+.|.+.+.... .+.... .|.. ...+..+++|+||||||
T Consensus 9 ~~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~------~g~~------------~~~~~~~vll~G~pGTG 70 (284)
T TIGR02880 9 EASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQR------LGLA------------SAAPTLHMSFTGNPGTG 70 (284)
T ss_pred hhccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH------hCCC------------cCCCCceEEEEcCCCCC
Confidence 4566788999999879999999999998775321 111111 1111 11123589999999999
Q ss_pred hHHHHHHHHHHhC-------CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcc
Q 008329 343 KTLLAKTLARYVN-------VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (570)
Q Consensus 343 KTtLAraLA~~lg-------~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~ 415 (570)
||++|+++|+.+. .+++.++++++. ..|+|+. ...+.+.+..+ .++||||||++.+.+.+.
T Consensus 71 KT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~--- 138 (284)
T TIGR02880 71 KTTVALRMAQILHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEILKRA-------MGGVLFIDEAYYLYRPDN--- 138 (284)
T ss_pred HHHHHHHHHHHHHHcCCcccceEEEecHHHHh-Hhhcccc-hHHHHHHHHHc-------cCcEEEEechhhhccCCC---
Confidence 9999999998772 368889988876 3688876 34455555543 568999999999864321
Q ss_pred cCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhh
Q 008329 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANM 495 (570)
Q Consensus 416 ~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~ 495 (570)
..+ .+..+++.|++.|+.. ..++++|++++...++...
T Consensus 139 -~~~-~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~------------------- 176 (284)
T TIGR02880 139 -ERD-YGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF------------------- 176 (284)
T ss_pred -ccc-hHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH-------------------
Confidence 111 2344889999999831 2457888887753221111
Q ss_pred hcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 496 RAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 496 ~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.+.|+|.+||+..+.|++|+.+|+.+|+....
T Consensus 177 --------------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 177 --------------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred --------------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 15699999999999999999999999988765
No 35
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.77 E-value=3.4e-18 Score=183.79 Aligned_cols=213 Identities=22% Similarity=0.334 Sum_probs=145.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++.+|+.|.+.+.....+ ++...+. .++.++||+||||||||++|+++|+.++
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---------------------~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGI---------------------DPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---------------------CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999754442 2221111 1247899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++.+.++++. ..|+|+. ...++++|..+.. ..|+||||||+|.+...|.+...+.+....++...|+..|++
T Consensus 205 ~~fi~i~~s~l~-~k~~ge~-~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 205 ATFIRVVGSEFV-QKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred CCEEEEehHHHH-HHhcchh-HHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 999999988876 4688886 6678888876642 578999999999998876543333332223455556666664
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
.. ...++.+|++||.++ +++++. .+||+..|.|+.|+.+.. ..+.+.+...+
T Consensus 279 ~~-------------------~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R-------~~Il~~~~~~~ 332 (398)
T PTZ00454 279 FD-------------------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK-------RLIFQTITSKM 332 (398)
T ss_pred cC-------------------CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHH-------HHHHHHHHhcC
Confidence 21 134678888888877 655554 469999999999987651 12222222221
Q ss_pred ChhhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 514 ~~~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.- . .... .++..+ .+.++..|+..++.+..
T Consensus 333 ~l---~-~dvd~~~la~~------t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 333 NL---S-EEVDLEDFVSR------PEKISAADIAAICQEAG 363 (398)
T ss_pred CC---C-cccCHHHHHHH------cCCCCHHHHHHHHHHHH
Confidence 11 0 0011 233332 36789999999888765
No 36
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2e-18 Score=173.44 Aligned_cols=170 Identities=24% Similarity=0.363 Sum_probs=130.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|.|.+..+++|.+++.....+..... +..+ .++.++|+|||||||||.+||+.|...+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~------------------~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFE------------------NLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHH------------------hcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 489999999999999964433211110 0011 134799999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc---
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE--- 434 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE--- 434 (570)
|..+.+..+.++ |+|.. .+.+++.|.-+.. ..|+||||||+|++..+|.+....+| +.+|.++|+++.
T Consensus 233 FLKLAgPQLVQM-fIGdG-AkLVRDAFaLAKE----kaP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLNQLD 303 (424)
T KOG0652|consen 233 FLKLAGPQLVQM-FIGDG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLNQLD 303 (424)
T ss_pred HHHhcchHHHhh-hhcch-HHHHHHHHHHhhc----cCCeEEEEechhhhcccccccccccc---HHHHHHHHHHHHhhc
Confidence 999999888854 99998 8899999988764 68999999999999998876544444 347777777765
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCCh-HH-HHHhcccccccccCchhhhh
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e~-~l~~Rrfd~~I~f~~p~~e~ 494 (570)
|+. ....+-+|+++|..|+ +. +++.+|.|+.|+||.|..+.
T Consensus 304 GFs-------------------s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~a 346 (424)
T KOG0652|consen 304 GFS-------------------SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA 346 (424)
T ss_pred CCC-------------------CccceEEEeecccccccCHHHhhcccccccccCCCCChHH
Confidence 432 2455888999999994 33 34566999999999998765
No 37
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=1.2e-17 Score=169.30 Aligned_cols=182 Identities=18% Similarity=0.348 Sum_probs=125.7
Q ss_pred HhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 273 KGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 273 ~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
++|++ ++|++.+|+.|.+.+....... .+...|...+ -...+++|+||||||||++|+++|+
T Consensus 3 ~~l~~-~~Gl~~vk~~i~~~~~~~~~~~-----~~~~~g~~~~------------~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 3 RELSR-MVGLDEVKALIKEIYAWIQINE-----KRKEEGLKTS------------KQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHHHH-hcChHHHHHHHHHHHHHHHHHH-----HHHHcCCCCC------------CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 45666 7999999999998775321110 0011111111 1236899999999999999999998
Q ss_pred Hh-------CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 353 YV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 353 ~l-------g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
.+ ..+++.++++++. ..|+|+. ...+.+.+..+ .++||||||+|.+... +....+..+
T Consensus 65 ~l~~~~~~~~~~~v~~~~~~l~-~~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~~ 129 (261)
T TIGR02881 65 LFKEMNVLSKGHLIEVERADLV-GEYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKEA 129 (261)
T ss_pred HHHhcCcccCCceEEecHHHhh-hhhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHHH
Confidence 75 2467888888876 5688886 55566666554 4589999999999632 111122347
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHH
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~ 505 (570)
++.|++.||+. ..++++|++++..+++...
T Consensus 130 i~~Ll~~~e~~---------------------~~~~~vila~~~~~~~~~~----------------------------- 159 (261)
T TIGR02881 130 IDTLVKGMEDN---------------------RNEFVLILAGYSDEMDYFL----------------------------- 159 (261)
T ss_pred HHHHHHHHhcc---------------------CCCEEEEecCCcchhHHHH-----------------------------
Confidence 88999999841 3446777777654332211
Q ss_pred HHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 506 ~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.+.|.+.+||+..+.|++++.+++.+|+....
T Consensus 160 ----------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 160 ----------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred ----------------hcChHHHhccceEEEECCCCHHHHHHHHHHHH
Confidence 15689999999999999999999999998654
No 38
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=7.2e-18 Score=196.23 Aligned_cols=223 Identities=21% Similarity=0.342 Sum_probs=150.9
Q ss_pred CCCCCCCCCCC----CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008329 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (570)
Q Consensus 255 ~~~~~~~~~~~----~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~ 330 (570)
+|++.++.... .....+.+.|.+.|+||++|++.|..++.....++ ..+. .+.
T Consensus 540 ~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl------------~~~~-----------~p~ 596 (852)
T TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGL------------EDPR-----------KPL 596 (852)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCC------------CCCC-----------CCc
Confidence 57777775433 24456889999999999999999999996322211 1110 112
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~ 396 (570)
+.+||+||||||||.+|+++|+.+ ...++.++++++.+ .||+|.+....+.+.+.. .+.
T Consensus 597 ~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-------~p~ 669 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR-------KPY 669 (852)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-------CCC
Confidence 457899999999999999999998 45788999887643 467776533344443332 456
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
+||+||||+++.+. +++.|+++|+...+ .+..+ ..++++|.+||+|+|... +...
T Consensus 670 svvllDEieka~~~--------------v~~~Llq~ld~g~l--------~d~~G--r~vd~~n~iiI~TSNlg~-~~~~ 724 (852)
T TIGR03345 670 SVVLLDEVEKAHPD--------------VLELFYQVFDKGVM--------EDGEG--REIDFKNTVILLTSNAGS-DLIM 724 (852)
T ss_pred cEEEEechhhcCHH--------------HHHHHHHHhhccee--------ecCCC--cEEeccccEEEEeCCCch-HHHH
Confidence 89999999999876 99999999994432 23333 378899999999999753 2111
Q ss_pred HhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 477 ~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
. ...+.. ..+. .+...+.+...+ ...|.|||++|++ ++.|.+|+.+++.+|+....
T Consensus 725 ~-~~~~~~---~~~~----------~~~~~~~~~~~~------~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 725 A-LCADPE---TAPD----------PEALLEALRPEL------LKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred H-hccCcc---cCcc----------hHHHHHHHHHHH------HHhccHHHhccee-EEEeCCCCHHHHHHHHHHHH
Confidence 1 100000 0011 011112222222 2248899999996 88999999999999998765
No 39
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.75 E-value=1.2e-17 Score=179.19 Aligned_cols=168 Identities=27% Similarity=0.414 Sum_probs=122.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|.+++++.|.+.+.....+ .+..... -++.++||+||||||||++|+++|+.++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~---------------------~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGI---------------------EPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC---------------------CCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 4899999999999998644332 1111110 1236899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHH--
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-- 433 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~L-- 433 (570)
.+|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||+|.+...+...+.+.+ ..++..|++++
T Consensus 191 ~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~ 261 (389)
T PRK03992 191 ATFIRVVGSELV-QKFIGEG-ARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAE 261 (389)
T ss_pred CCEEEeehHHHh-Hhhccch-HHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHh
Confidence 999999999987 5688886 6778888876643 57899999999999877654332222 22455555554
Q ss_pred -cCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 434 -EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 434 -Eg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
++. -...++.+|+++|..+ +++++.+ +||+..|.|+.|+.+.
T Consensus 262 ld~~-------------------~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 262 MDGF-------------------DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred cccc-------------------CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHH
Confidence 421 0234688899998877 5555543 5999999999998765
No 40
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-18 Score=176.19 Aligned_cols=211 Identities=23% Similarity=0.352 Sum_probs=152.6
Q ss_pred cccCChHHHHHHHHHHHHhhhh--hhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 277 KFVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~--r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+|.|++..++++.++|..... .+|.....+ ++.+|+|||+||||||.||+|+|+..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGik---------------------pPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIK---------------------PPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC---------------------CCCeeEEeCCCCCchhHHHHHHhccc
Confidence 3589999999999999974433 234333322 35799999999999999999999999
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
...|.++-++++. ..|.|+. -+.++++|..|.. ..|+|+||||||++..+|-+.+++.+ +.+|..+|+++.
T Consensus 244 SATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e----~apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELLN 314 (440)
T KOG0726|consen 244 SATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----HAPSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELLN 314 (440)
T ss_pred chhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHh----cCCceEEeehhhhhccccccCCCccH---HHHHHHHHHHHH
Confidence 9999999999988 5799998 7889999998875 58999999999999998866555544 347777777775
Q ss_pred ---CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHH-HHHhcccccccccCchhhhhhhcCC-CChHHHHHH
Q 008329 435 ---GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEK-TISERRQDSSIGFGAPVRANMRAGG-VTDAVVTSS 508 (570)
Q Consensus 435 ---g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~-~l~~Rrfd~~I~f~~p~~e~~~~~~-~~~~~~~~~ 508 (570)
|+ + ...++-+|++||..+ ++. +++.+|.|+.|+|+.|+...-+... +.+.. -.
T Consensus 315 QldGF-----------d--------srgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mt 373 (440)
T KOG0726|consen 315 QLDGF-----------D--------SRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MT 373 (440)
T ss_pred hccCc-----------c--------ccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cc
Confidence 32 1 134477888888877 444 4567899999999999976533211 11111 11
Q ss_pred HHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 509 LMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 509 Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
|-+.|+-++ | +..-+++|-.|+..|+++.-
T Consensus 374 l~~dVnle~---------l------i~~kddlSGAdIkAictEaG 403 (440)
T KOG0726|consen 374 LAEDVNLEE---------L------IMTKDDLSGADIKAICTEAG 403 (440)
T ss_pred hhccccHHH---------H------hhcccccccccHHHHHHHHh
Confidence 222333322 2 22346788888888888764
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.74 E-value=7.3e-18 Score=177.71 Aligned_cols=151 Identities=14% Similarity=0.234 Sum_probs=111.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhH-hhhcCeEEEEcchhhhh
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v-~~~~~gILfIDEID~L~ 408 (570)
+..++|+||||||||.+|+++|+.++.+++.+++.++. .+|+||. ++.++++|..|.... ...++|||||||||++.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 36788999999999999999999999999999999998 7899998 999999999886432 24579999999999999
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHcCCe-eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hccccccc
Q 008329 409 KKAESLNISRDVSGEGVQQALLKMLEGTV-VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSI 485 (570)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~~LL~~LEg~~-v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I 485 (570)
+.+++ .+.....+.+..+|+.+||+-. +.+ .| .+.. .-...++.+|+|||.++ +++++. .+|||+.+
T Consensus 226 g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l--~G-~w~~-----~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i 295 (413)
T PLN00020 226 GRFGT--TQYTVNNQMVNGTLMNIADNPTNVSL--GG-DWRE-----KEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 295 (413)
T ss_pred CCCCC--CCcchHHHHHHHHHHHHhcCCccccc--cc-cccc-----cccCCCceEEEeCCCcccCCHhHcCCCCCCcee
Confidence 98752 2333334445588999998521 111 11 0000 11355688999999988 554443 35999965
Q ss_pred ccCchhhhh
Q 008329 486 GFGAPVRAN 494 (570)
Q Consensus 486 ~f~~p~~e~ 494 (570)
..|+++.
T Consensus 296 --~lPd~e~ 302 (413)
T PLN00020 296 --WAPTRED 302 (413)
T ss_pred --CCCCHHH
Confidence 4677654
No 42
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.73 E-value=2.2e-17 Score=179.29 Aligned_cols=171 Identities=25% Similarity=0.391 Sum_probs=123.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++.+++.|.+++.....+ ++.... +. ++.++||+||||||||++|+++|+.++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g--------------------i~-~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIG--------------------IK-PPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcC--------------------CC-CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4899999999999999643322 111111 11 236899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.+.++++. ..|+|+. ...++++|..+.. ..++||||||||.+..++.....+.+....++...|+..|++
T Consensus 243 ~~fi~V~~seL~-~k~~Ge~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 243 ATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred CCEEEEecchhh-hhhcchH-HHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 999999999887 4688887 6678888876643 478999999999998776543333322222334445555554
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
.. ...++.+|+++|..+ ++.++. .+||+..|.|+.|+.+.
T Consensus 317 ~~-------------------~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 317 FD-------------------SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred hc-------------------ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 21 234678888888877 666554 46999999999998765
No 43
>CHL00176 ftsH cell division protein; Validated
Probab=99.72 E-value=2.9e-17 Score=185.67 Aligned_cols=172 Identities=25% Similarity=0.342 Sum_probs=125.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|+|.+++|+.+.+.+.. .++... . ...... .+.++||+||||||||++|+++|+.++.+
T Consensus 184 dv~G~~~~k~~l~eiv~~-lk~~~~-~-----------------~~~g~~-~p~gVLL~GPpGTGKT~LAralA~e~~~p 243 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSF-LKKPER-F-----------------TAVGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAEVP 243 (638)
T ss_pred hccChHHHHHHHHHHHHH-HhCHHH-H-----------------hhccCC-CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988752 121110 0 000111 23689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++++.. .++|.. ...++.+|..+.. ..|+||||||+|.+...|+....+.+...+.+.+.||..|||..
T Consensus 244 ~i~is~s~f~~-~~~g~~-~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 244 FFSISGSEFVE-MFVGVG-AARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred eeeccHHHHHH-Hhhhhh-HHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 99999998763 466765 5667888877643 57899999999999877654433344444567788888888531
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
...++++|+++|.++ +++++. ++||+..|.++.|+.+.
T Consensus 318 -------------------~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 318 -------------------GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred -------------------CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 244688899999877 555554 45999999999998765
No 44
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.72 E-value=6.6e-17 Score=178.13 Aligned_cols=173 Identities=28% Similarity=0.374 Sum_probs=126.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++.+++.+.+.|...+.+ ++.....+ ++.++||+||||||||++|+++|+.++
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---------------------~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLK---------------------PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---------------------CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 3899999999999999754332 22222111 236899999999999999999999986
Q ss_pred Cc----------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 356 VP----------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 356 ~~----------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
.+ |+.+..+++. ..|+|+. ++.++.+|..+........++||||||+|.+...|.... +.+. ...+
T Consensus 242 ~~i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~-e~~i 317 (512)
T TIGR03689 242 QRIGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDV-ETTV 317 (512)
T ss_pred cccccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchH-HHHH
Confidence 54 4455566665 4688987 777888888765433334689999999999987764321 2222 2457
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
.++||..|+|. -...++++|++||.++ +++++. .+|||..|.|+.|+.+.
T Consensus 318 l~~LL~~LDgl-------------------~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~ 369 (512)
T TIGR03689 318 VPQLLSELDGV-------------------ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEA 369 (512)
T ss_pred HHHHHHHhccc-------------------ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHH
Confidence 78899999862 1245789999999988 565654 36999999999999765
No 45
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=8.2e-17 Score=163.64 Aligned_cols=171 Identities=26% Similarity=0.428 Sum_probs=127.7
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.|++ .+||+++|+.|...+.....| .+++ .|+||+||||.||||||..+|++
T Consensus 24 ~l~e-fiGQ~~vk~~L~ifI~AAk~r------------------~e~l---------DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDE-FIGQEKVKEQLQIFIKAAKKR------------------GEAL---------DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHH-hcChHHHHHHHHHHHHHHHhc------------------CCCc---------CeEEeeCCCCCcHHHHHHHHHHH
Confidence 3445 499999999999988633332 1222 69999999999999999999999
Q ss_pred hCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHH
Q 008329 354 VNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (570)
Q Consensus 354 lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~L 433 (570)
++..+...++..+...+ ++...+..+ ..+-|||||||+++.+. +-..|..+|
T Consensus 76 mgvn~k~tsGp~leK~g----DlaaiLt~L----------e~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKPG----DLAAILTNL----------EEGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccChh----hHHHHHhcC----------CcCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 99998877776655332 222222221 35669999999999987 788899999
Q ss_pred cCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 434 EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 434 Eg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
|++.+.|. ....+..+.+.++...+.+|.||+...
T Consensus 128 EDf~lDI~---IG~gp~Arsv~ldLppFTLIGATTr~G------------------------------------------ 162 (332)
T COG2255 128 EDFRLDII---IGKGPAARSIRLDLPPFTLIGATTRAG------------------------------------------ 162 (332)
T ss_pred hheeEEEE---EccCCccceEeccCCCeeEeeeccccc------------------------------------------
Confidence 99877552 111233455677888888888877543
Q ss_pred ChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 514 ~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.+...+..||..+..++.|+.+||.+|+.+..
T Consensus 163 --------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 163 --------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA 194 (332)
T ss_pred --------cccchhHHhcCCeeeeecCCHHHHHHHHHHHH
Confidence 14577889999999999999999999998754
No 46
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=2.9e-16 Score=183.35 Aligned_cols=220 Identities=23% Similarity=0.331 Sum_probs=146.8
Q ss_pred CCCCCCCCCCC----CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008329 255 CWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (570)
Q Consensus 255 ~~~~~~~~~~~----~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~ 330 (570)
.|++.+..... .....+.+.|.+.|+||+.|++.|..++...... ...+. .+.
T Consensus 539 ~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g------------l~~~~-----------~p~ 595 (852)
T TIGR03346 539 RWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG------------LSDPN-----------RPI 595 (852)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc------------CCCCC-----------CCC
Confidence 46666555422 2344577888899999999999999999632221 11110 122
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~ 396 (570)
+.+||.||+|||||++|++||+.+ +.+++.++++++.+ .+|+|.+....+.+.+.. ...
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~-------~p~ 668 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR-------KPY 668 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc-------CCC
Confidence 568899999999999999999987 46899999987543 245554322233333222 345
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
+||+||||+++.+. +++.|+++|+...+ ... ....++.+|.+||+|+|... +...
T Consensus 669 ~vlllDeieka~~~--------------v~~~Ll~~l~~g~l--------~d~--~g~~vd~rn~iiI~TSn~g~-~~~~ 723 (852)
T TIGR03346 669 SVVLFDEVEKAHPD--------------VFNVLLQVLDDGRL--------TDG--QGRTVDFRNTVIIMTSNLGS-QFIQ 723 (852)
T ss_pred cEEEEeccccCCHH--------------HHHHHHHHHhcCce--------ecC--CCeEEecCCcEEEEeCCcch-HhHh
Confidence 79999999999887 99999999984332 222 23478899999999999753 1111
Q ss_pred HhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 477 ~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.. + +..+ .+.....+++. .+..|.|||++|++.++.|.+++.+++.+|+....
T Consensus 724 ~~--~------~~~~----------~~~~~~~~~~~------~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 724 EL--A------GGDD----------YEEMREAVMEV------LRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred hh--c------cccc----------HHHHHHHHHHH------HHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHH
Confidence 10 0 0000 01111222222 23358999999999999999999999999998765
No 47
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=3e-16 Score=181.54 Aligned_cols=167 Identities=24% Similarity=0.330 Sum_probs=115.1
Q ss_pred CCCCCCCCCCCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEE
Q 008329 255 CWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL 334 (570)
Q Consensus 255 ~~~~~~~~~~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vL 334 (570)
+|... .......+.+.+.|++.+.||+.+|+.+.+.+..+..+ . ......++
T Consensus 300 p~~~~--~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~---~-----------------------~~~~~~ll 351 (775)
T TIGR00763 300 PWGKY--SKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR---G-----------------------KMKGPILC 351 (775)
T ss_pred CCccc--ccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh---c-----------------------CCCCceEE
Confidence 56442 22355678889999999999999999999877532211 0 01124688
Q ss_pred EECCCCCchHHHHHHHHHHhCCcEEEeecccccc--------cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhh
Q 008329 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (570)
Q Consensus 335 L~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~--------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~ 406 (570)
|+||||||||++|+++|+.++.+++.+++..+.. ..|+|.... .+.+.+..+. ..+.||||||||+
T Consensus 352 l~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g-~i~~~l~~~~-----~~~~villDEidk 425 (775)
T TIGR00763 352 LVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPG-RIIQGLKKAK-----TKNPLFLLDEIDK 425 (775)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCc-hHHHHHHHhC-----cCCCEEEEechhh
Confidence 9999999999999999999999999988765321 346666533 3444444432 2445999999999
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
+.+.. ..+ ..++|+++||. +....+.+......++.++++||+|+|..+
T Consensus 426 ~~~~~-----~~~-----~~~aLl~~ld~------~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 426 IGSSF-----RGD-----PASALLEVLDP------EQNNAFSDHYLDVPFDLSKVIFIATANSID 474 (775)
T ss_pred cCCcc-----CCC-----HHHHHHHhcCH------HhcCccccccCCceeccCCEEEEEecCCch
Confidence 98531 111 46789999982 223333444444567889999999999753
No 48
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.8e-16 Score=176.62 Aligned_cols=178 Identities=24% Similarity=0.350 Sum_probs=137.8
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcE
Q 008329 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (570)
Q Consensus 254 ~~~~~~~~~~~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~v 333 (570)
-+|+.. ..+....++..+.|+++-.|.+++|+++.+.+.-.... . .+...-+
T Consensus 302 lPW~~~--sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-----~---------------------~~kGpIL 353 (782)
T COG0466 302 LPWGKR--SKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-----K---------------------KLKGPIL 353 (782)
T ss_pred CCCccc--cchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-----c---------------------cCCCcEE
Confidence 467543 33667788899999998899999999999988522211 0 1112344
Q ss_pred EEECCCCCchHHHHHHHHHHhCCcEEEeecccccc--------cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 334 LL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~--------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
+|+||||+|||+|++.||+.+++.|++++-..+.+ --|+|..+.+.+..+-... ..+.+++|||||
T Consensus 354 cLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~------~~NPv~LLDEID 427 (782)
T COG0466 354 CLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG------VKNPVFLLDEID 427 (782)
T ss_pred EEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhC------CcCCeEEeechh
Confidence 59999999999999999999999999998765543 2388888777776654433 345689999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhccc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQ 481 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrf 481 (570)
+|..+ ..+| =.++||++|| ||++..+.++.-.+.+|.+++.||||+|+.+ +..++..|+.
T Consensus 428 Km~ss-----~rGD-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME 488 (782)
T COG0466 428 KMGSS-----FRGD-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME 488 (782)
T ss_pred hccCC-----CCCC-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccccCChHHhccee
Confidence 99764 1222 4678999999 9999999999999999999999999999987 7777776654
No 49
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.9e-16 Score=165.65 Aligned_cols=185 Identities=23% Similarity=0.357 Sum_probs=139.3
Q ss_pred CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCch
Q 008329 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (570)
Q Consensus 264 ~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGK 343 (570)
....|.+|...+++ |.|++.+|++|.+.|..+.++...- ....+-.++.++||+|||||||
T Consensus 80 ~~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~pelF------------------~~g~Ll~p~kGiLL~GPpG~GK 140 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRRPELF------------------AKGKLLRPPKGILLYGPPGTGK 140 (386)
T ss_pred cccchhhceeehhh-ccchHHHHHHHHHHHhhcccchhhh------------------cccccccCCccceecCCCCchH
Confidence 45667777777777 7999999999999997544432111 1122334568999999999999
Q ss_pred HHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 344 TtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
|.+|+++|++.+..|+.+..+.++ .+|.|+. ++.++.+|..+. +-.|+||||||+|.+...|. .+.++.-.
T Consensus 141 TmlAKA~Akeaga~fInv~~s~lt-~KWfgE~-eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~---s~dHEa~a 211 (386)
T KOG0737|consen 141 TMLAKAIAKEAGANFINVSVSNLT-SKWFGEA-QKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRR---STDHEATA 211 (386)
T ss_pred HHHHHHHHHHcCCCcceeeccccc-hhhHHHH-HHHHHHHHhhhh----hcCcceeehhhHHHHHhhcc---cchHHHHH
Confidence 999999999999999999999999 4899997 888888888765 35899999999999998873 23333334
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhh
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
.+.+.|...-||... -+...+++++|||.+. +++++. ||+.+.+..+.|+.++
T Consensus 212 ~mK~eFM~~WDGl~s-----------------~~~~rVlVlgATNRP~DlDeAii-RR~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 212 MMKNEFMALWDGLSS-----------------KDSERVLVLGATNRPFDLDEAII-RRLPRRFHVGLPDAEQ 265 (386)
T ss_pred HHHHHHHHHhccccC-----------------CCCceEEEEeCCCCCccHHHHHH-HhCcceeeeCCCchhh
Confidence 467778877776431 1233478888888876 777776 5666777778887655
No 50
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.68 E-value=3.5e-16 Score=177.55 Aligned_cols=225 Identities=20% Similarity=0.273 Sum_probs=152.8
Q ss_pred ChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHH
Q 008329 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (570)
Q Consensus 267 ~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtL 346 (570)
.+..+...+++ |.|.+.+++.|.+.+... +.... . +.....+ +.+++|+||||||||++
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~~-~~~~~-~-----------------~~~~~~~-~~gill~G~~G~GKt~~ 201 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEYL-REPSR-F-----------------QKLGGKI-PKGVLMVGPPGTGKTLL 201 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHHh-hCHHH-H-----------------HhcCCCC-CCcEEEECCCCCCHHHH
Confidence 44455556665 799999999999887521 11000 0 0001112 25799999999999999
Q ss_pred HHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 347 AKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 347 AraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
|+++++.++.+|+.++++++. ..++|.. ...+++.|..+. ...|+||||||+|.+...|.....+.+...+.+.
T Consensus 202 ~~~~a~~~~~~f~~is~~~~~-~~~~g~~-~~~~~~~f~~a~----~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~l 275 (644)
T PRK10733 202 AKAIAGEAKVPFFTISGSDFV-EMFVGVG-ASRVRDMFEQAK----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTL 275 (644)
T ss_pred HHHHHHHcCCCEEEEehHHhH-Hhhhccc-HHHHHHHHHHHH----hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHH
Confidence 999999999999999999877 3577776 566788887654 2578999999999999877654334444556688
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhhhhcCCCChHH
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRANMRAGGVTDAV 504 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~~~~~~~~~~~ 504 (570)
+.||..|||.. ....+++|++||.++ ++.++.+ +|||+.|.++.|+.+. ..+
T Consensus 276 n~lL~~mdg~~-------------------~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~-------R~~ 329 (644)
T PRK10733 276 NQMLVEMDGFE-------------------GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG-------REQ 329 (644)
T ss_pred HHHHHhhhccc-------------------CCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH-------HHH
Confidence 99999998632 244688999999988 5555554 6999999999999764 122
Q ss_pred HHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 505 VTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 505 ~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
+.......+.- ........+.+ ....++..||..++++..
T Consensus 330 Il~~~~~~~~l----~~~~d~~~la~-----~t~G~sgadl~~l~~eAa 369 (644)
T PRK10733 330 ILKVHMRRVPL----APDIDAAIIAR-----GTPGFSGADLANLVNEAA 369 (644)
T ss_pred HHHHHhhcCCC----CCcCCHHHHHh-----hCCCCCHHHHHHHHHHHH
Confidence 22222222210 00111122221 246788888888888765
No 51
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.68 E-value=7.1e-16 Score=179.93 Aligned_cols=220 Identities=24% Similarity=0.357 Sum_probs=147.4
Q ss_pred CCCCCCCCCCCC----ChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccC
Q 008329 255 CWGGSNLGNKFP----TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEK 330 (570)
Q Consensus 255 ~~~~~~~~~~~~----~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~ 330 (570)
.|++.++..... ....+.+.|.+.|+||+.+++.|...+...... ...+. .+.
T Consensus 542 ~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g------------l~~~~-----------~p~ 598 (857)
T PRK10865 542 RWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG------------LSDPN-----------RPI 598 (857)
T ss_pred HHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc------------ccCCC-----------CCC
Confidence 677877765333 345578889999999999999999999622211 11110 112
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~ 396 (570)
+.+||+||+|||||++|++||+.+ +.+++.++++++.+ .+|+|.+....+.+... ....
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~-------~~p~ 671 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR-------RRPY 671 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH-------hCCC
Confidence 468899999999999999999987 45788899887643 23444432222222221 1345
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
+||+|||++++.+. +++.|+++|+...+ ... ....++.+|.+||+|+|... +.+
T Consensus 672 ~vLllDEieka~~~--------------v~~~Ll~ile~g~l--------~d~--~gr~vd~rn~iiI~TSN~g~--~~~ 725 (857)
T PRK10865 672 SVILLDEVEKAHPD--------------VFNILLQVLDDGRL--------TDG--QGRTVDFRNTVVIMTSNLGS--DLI 725 (857)
T ss_pred CeEEEeehhhCCHH--------------HHHHHHHHHhhCce--------ecC--CceEEeecccEEEEeCCcch--HHH
Confidence 89999999999877 99999999984322 111 23467889999999999752 111
Q ss_pred HhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 477 SERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 477 ~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.. ++ +... .++..+.+... ....|.|+|++|++.++.|.+++.+++.+|+....
T Consensus 726 ~~-~~------~~~~----------~~~~~~~~~~~------~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 726 QE-RF------GELD----------YAHMKELVLGV------VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred HH-hc------cccc----------hHHHHHHHHHH------HcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHH
Confidence 11 11 1110 11112222222 23468999999999999999999999999988765
No 52
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.5e-16 Score=170.81 Aligned_cols=171 Identities=26% Similarity=0.339 Sum_probs=136.8
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
+++.|++.+|+.+.+++.....|...-...+ -+.+++||.||||+|||+|+++||.+.+.
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~glr--------------------~p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGLR--------------------EPVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccchHhhhccc--------------------cccchhheecCCCCchHHHHHHHHhhhcc
Confidence 3689999999999999975554322222211 12368999999999999999999999999
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~ 436 (570)
.|+.++++++. ..|+|+. ++.++.+|..|+. .+|+|+||||||++..+|. ...+...++.+..+|-.+++.
T Consensus 213 tff~iSassLt-sK~~Ge~-eK~vralf~vAr~----~qPsvifidEidslls~Rs---~~e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 213 TFFNISASSLT-SKYVGES-EKLVRALFKVARS----LQPSVIFIDEIDSLLSKRS---DNEHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred eEeeccHHHhh-hhccChH-HHHHHHHHHHHHh----cCCeEEEechhHHHHhhcC---CcccccchhhhhHHHhhhccc
Confidence 99999999999 7899998 8999999988864 6899999999999999883 345555666787777777753
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhh
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
.. ...+++++|+|||.+. +++++++ ||.+.+.++.|+.+.
T Consensus 284 ~s-----------------~~~drvlvigaTN~P~e~Dea~~R-rf~kr~yiplPd~et 324 (428)
T KOG0740|consen 284 NS-----------------APDDRVLVIGATNRPWELDEAARR-RFVKRLYIPLPDYET 324 (428)
T ss_pred cC-----------------CCCCeEEEEecCCCchHHHHHHHH-HhhceeeecCCCHHH
Confidence 21 1233789999999998 7777765 999999999998875
No 53
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.6e-16 Score=177.56 Aligned_cols=232 Identities=25% Similarity=0.344 Sum_probs=161.9
Q ss_pred CCCCCCCCCCCCC----CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccc
Q 008329 253 DGCWGGSNLGNKF----PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVEL 328 (570)
Q Consensus 253 ~~~~~~~~~~~~~----~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i 328 (570)
..+|.+.+..... .....+.+.|.+.|+||++|+.+|.++|.....+.... .
T Consensus 534 ~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~------------------------~ 589 (898)
T KOG1051|consen 534 VSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP------------------------N 589 (898)
T ss_pred hhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC------------------------C
Confidence 4678887776544 35566888999999999999999999996322211110 1
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccc--------ccccccchhhHHHHHHhhhcchhHhhhcCe
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT--------QAGYVGEDVESILYKLLTVSDYNVAAAQQG 397 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~--------~~g~vGe~~~~~lr~lf~~a~~~v~~~~~g 397 (570)
+...++|.||.|+|||.||+++|..+ ...|+.++++++. ..+|+|......+.+.+... ..+
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrrr-------P~s 662 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRR-------PYS 662 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcC-------Cce
Confidence 23578899999999999999999998 3468999999732 36799988666666665554 457
Q ss_pred EEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHH
Q 008329 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (570)
Q Consensus 398 ILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~ 477 (570)
||+|||||++.+. +++.|+++||. |...+.+|+ .++.+|++||+|.|... +.+.
T Consensus 663 VVLfdeIEkAh~~--------------v~n~llq~lD~--------GrltDs~Gr--~Vd~kN~I~IMTsn~~~--~~i~ 716 (898)
T KOG1051|consen 663 VVLFEEIEKAHPD--------------VLNILLQLLDR--------GRLTDSHGR--EVDFKNAIFIMTSNVGS--SAIA 716 (898)
T ss_pred EEEEechhhcCHH--------------HHHHHHHHHhc--------CccccCCCc--EeeccceEEEEecccch--Hhhh
Confidence 9999999999988 99999999993 444555554 88999999999988642 1122
Q ss_pred hcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHh----cCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 478 ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIA----YGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 478 ~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~----~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.... ..++-.-. ++.....-....+..+... ..+.|||++|++.++.+.+++.+++.+|+..+.
T Consensus 717 ~~~~--~~~~l~~~----------~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 717 NDAS--LEEKLLDM----------DEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQL 784 (898)
T ss_pred cccc--cccccccc----------hhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHH
Confidence 1111 11110000 0000000111122233344 668999999999999999999999999988765
No 54
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.5e-16 Score=172.04 Aligned_cols=228 Identities=25% Similarity=0.323 Sum_probs=163.8
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcE
Q 008329 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (570)
Q Consensus 254 ~~~~~~~~~~~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~v 333 (570)
-+|+.... +.......++.|+++-.|.+.+|+++.+.+.-...+ -.....-+
T Consensus 390 LPWgk~S~--En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr--------------------------gs~qGkIl 441 (906)
T KOG2004|consen 390 LPWGKSST--ENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLR--------------------------GSVQGKIL 441 (906)
T ss_pred CCCCCCCh--hhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhc--------------------------ccCCCcEE
Confidence 47865433 456677788899998899999999999998622221 01122344
Q ss_pred EEECCCCCchHHHHHHHHHHhCCcEEEeecccccc--------cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 334 LL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~--------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
+|+||||+|||++|+.||+.+|+.|++++-..+.+ --|+|..+.+.+.-+-.... .+-+++|||||
T Consensus 442 Cf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvD 515 (906)
T KOG2004|consen 442 CFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVD 515 (906)
T ss_pred EEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhh
Confidence 59999999999999999999999999988655443 23888887777665544332 34588999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSS 484 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~ 484 (570)
++... ..+| -..+||++|| ||++..+.++.-.+.+|.+.++||||.|..+ ++.+++.|+.-..
T Consensus 516 KlG~g-----~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIe 579 (906)
T KOG2004|consen 516 KLGSG-----HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIE 579 (906)
T ss_pred hhCCC-----CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheee
Confidence 99721 2233 4678999999 8999999999999999999999999999988 6777766544211
Q ss_pred cccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 485 I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..+...++...--...+-+..+.++|+.|+.+ +++++.+..++.+.+
T Consensus 580 ------------lsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v----------~is~~al~~lI~~Yc 626 (906)
T KOG2004|consen 580 ------------LSGYVAEEKVKIAERYLIPQALKDCGLKPEQV----------KISDDALLALIERYC 626 (906)
T ss_pred ------------ccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc----------CccHHHHHHHHHHHH
Confidence 12222222233334555666677778887754 577888888887654
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.67 E-value=3.7e-16 Score=165.05 Aligned_cols=127 Identities=25% Similarity=0.377 Sum_probs=100.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
.+++|||||||||||+|++||+..+.+|..+++..-. .+.+++.++.++......++.|||||||+++...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 6899999999999999999999999999998875422 3557788887765554567899999999999887
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCch
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p 490 (570)
.|+.||..||... +++|.+|+-..
T Consensus 120 --------------QQD~lLp~vE~G~-----------------------iilIGATTENP------------------- 143 (436)
T COG2256 120 --------------QQDALLPHVENGT-----------------------IILIGATTENP------------------- 143 (436)
T ss_pred --------------hhhhhhhhhcCCe-----------------------EEEEeccCCCC-------------------
Confidence 8999999999432 45666655321
Q ss_pred hhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 491 VRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 491 ~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
.+.+.+.+++|. .+..|.+++.+|+.++|++.
T Consensus 144 -----------------------------sF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 144 -----------------------------SFELNPALLSRA-RVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred -----------------------------CeeecHHHhhhh-heeeeecCCHHHHHHHHHHH
Confidence 123668888887 56789999999999999873
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.67 E-value=4.9e-16 Score=164.87 Aligned_cols=168 Identities=27% Similarity=0.408 Sum_probs=117.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|.+.+++.|.+.+.....+ .+... .+. ++.++||+||||||||++|+++|+.++
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~--------------------g~~-~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEV--------------------GIE-PPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhc--------------------CCC-CCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4899999999999998643322 11111 111 236799999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHH--
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-- 433 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~L-- 433 (570)
.+++.+.+.++. ..|+|+. ...++..|..+.. ..++||||||+|.+...+.....+.+. .++..+.+++
T Consensus 182 ~~~~~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~---~~~~~l~~ll~~ 252 (364)
T TIGR01242 182 ATFIRVVGSELV-RKYIGEG-ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDR---EVQRTLMQLLAE 252 (364)
T ss_pred CCEEecchHHHH-HHhhhHH-HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccH---HHHHHHHHHHHH
Confidence 999999887766 4577775 5566777765532 467899999999998765443322222 2444444444
Q ss_pred -cCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 434 -EGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 434 -Eg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
++. -...++.+|+++|..+ +++.+. .+||+..|.|+.|+.+.
T Consensus 253 ld~~-------------------~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 253 LDGF-------------------DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred hhCC-------------------CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 431 0234688899998877 445544 45999999999998655
No 57
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.9e-16 Score=160.14 Aligned_cols=172 Identities=22% Similarity=0.297 Sum_probs=130.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|-|.-..++++.+.|..|...-+ ....+++. ++..++||||||+|||.+|+++|...++.
T Consensus 133 ~~ggl~~qirelre~ielpl~np~------------------lf~rvgIk-~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 133 NVGGLFYQIRELREVIELPLTNPE------------------LFLRVGIK-PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred HhCChHHHHHHHHhheEeeccCch------------------hccccCCC-CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 588999999999999876665311 11112222 23678899999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.+.++++. .+|+||. .+.+++.|..|.. ..+||||+||||++...+.+.+...+ +.+|.+|.+++++-.
T Consensus 194 fl~v~ss~lv-~kyiGEs-aRlIRemf~yA~~----~~pciifmdeiDAigGRr~se~Ts~d---reiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 194 FLKVVSSALV-DKYIGES-ARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFSEGTSSD---REIQRTLMELLNQMD 264 (388)
T ss_pred eEEeeHhhhh-hhhcccH-HHHHHHHHHHHhh----hCceEEeehhhhhhccEEeccccchh---HHHHHHHHHHHHhhc
Confidence 9999999998 6899998 8999999988764 46799999999999998866554444 447777777766210
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hH-HHHHhcccccccccCchhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IE-KTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le-~~l~~Rrfd~~I~f~~p~~e 493 (570)
| ++ ....+.+|+|||.++ |+ .+++.+|.++.+..|.|..-
T Consensus 265 ------g--fd--------~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~ 306 (388)
T KOG0651|consen 265 ------G--FD--------TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQ 306 (388)
T ss_pred ------c--ch--------hcccccEEEecCCccccchhhcCCccccceeccCCcchh
Confidence 0 00 134578899999988 44 44567899999999988643
No 58
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.64 E-value=4.6e-15 Score=171.48 Aligned_cols=198 Identities=19% Similarity=0.297 Sum_probs=140.7
Q ss_pred CCCCCCCCCCCCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcE
Q 008329 254 GCWGGSNLGNKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI 333 (570)
Q Consensus 254 ~~~~~~~~~~~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~v 333 (570)
-+|+.. ..+.....+..+.|+++..|++++|+.+.+.+...... .. .....+
T Consensus 301 ~pw~~~--~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~------~~--------------------~~g~~i 352 (784)
T PRK10787 301 VPWNAR--SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRV------NK--------------------IKGPIL 352 (784)
T ss_pred CCCCCC--CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhc------cc--------------------CCCceE
Confidence 478553 34567888999999999999999999999887522210 00 012467
Q ss_pred EEECCCCCchHHHHHHHHHHhCCcEEEeecccccc--------cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 334 LLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 334 LL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~--------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
+|+||||+|||++++.+|+.++.++++++.+...+ ..|+|...... .+.+..+. ....|++|||+|
T Consensus 353 ~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~-~~~l~~~~-----~~~~villDEid 426 (784)
T PRK10787 353 CLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKL-IQKMAKVG-----VKNPLFLLDEID 426 (784)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHH-HHHHHhcC-----CCCCEEEEEChh
Confidence 89999999999999999999999999988776442 12455443332 22222221 245699999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I 485 (570)
++.+... .+ .+++|+++|| |++...+.++...+.++.++++||+|+|+..
T Consensus 427 k~~~~~~-----g~-----~~~aLlevld------~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-------------- 476 (784)
T PRK10787 427 KMSSDMR-----GD-----PASALLEVLD------PEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-------------- 476 (784)
T ss_pred hcccccC-----CC-----HHHHHHHHhc------cccEEEEecccccccccCCceEEEEcCCCCC--------------
Confidence 9986411 11 5789999999 3445556666667788999999999988642
Q ss_pred ccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 486 GFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 486 ~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
+.|.|++|+ .++.+.+|+++++.+|++...
T Consensus 477 -------------------------------------i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 477 -------------------------------------IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred -------------------------------------CCHHHhcce-eeeecCCCCHHHHHHHHHHhh
Confidence 557777787 466788888888877777654
No 59
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.60 E-value=3.3e-15 Score=133.08 Aligned_cols=130 Identities=30% Similarity=0.526 Sum_probs=96.9
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhh
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~ 412 (570)
+||+||||||||++|+.+|+.++.+++.+++.++. ..+.++. .+.+.+.+..+... ..++||+|||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 68999999999999999999999999999999987 4456665 66777777775421 137999999999999875
Q ss_pred hcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccC
Q 008329 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFG 488 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~ 488 (570)
+.........+++.|+..|+... -...++++|+++|..+ +++.+.++||+..|+++
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~~~------------------~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDNPS------------------SKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHTTT------------------TTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred --ccccccccccccceeeecccccc------------------cccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 11233334568899999998421 0134588999999876 44444438898888775
No 60
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.60 E-value=3.4e-15 Score=179.44 Aligned_cols=136 Identities=16% Similarity=0.280 Sum_probs=100.8
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHhCCcEEEeeccccccccc----------cc-------------------------
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGY----------VG------------------------- 373 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~----------vG------------------------- 373 (570)
+++++||+||||||||.||+++|+.++.||+.++++++... + +|
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhcch
Confidence 45799999999999999999999999999999999987632 1 12
Q ss_pred ------chh-hHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCcc
Q 008329 374 ------EDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGAR 446 (570)
Q Consensus 374 ------e~~-~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~ 446 (570)
++. ...++.+|+.|+ +.+||||+|||||++....+ .+...+.|+..|+|...
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~ds---------~~ltL~qLLneLDg~~~-------- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNES---------NYLSLGLLVNSLSRDCE-------- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCcc---------ceehHHHHHHHhccccc--------
Confidence 111 113666777665 36899999999999986511 12247889999986310
Q ss_pred ccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 447 KHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 447 ~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
.-.+.++++|+|||.++ +|+++. .+|||+.|.++.|+...
T Consensus 1767 --------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~ 1808 (2281)
T CHL00206 1767 --------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQ 1808 (2281)
T ss_pred --------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchh
Confidence 01356799999999999 555554 46999999998877543
No 61
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.5e-15 Score=172.79 Aligned_cols=170 Identities=24% Similarity=0.330 Sum_probs=131.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|.|.+.++..|++.|...+... +..+..++ .+++++||+||||||||++|+++|..+
T Consensus 266 ~vggl~~~i~~LKEmVl~PLlyP------------------E~f~~~~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~ 326 (1080)
T KOG0732|consen 266 SVGGLENYINQLKEMVLLPLLYP------------------EFFDNFNI-TPPRGVLFHGPPGTGKTLMARALAAACSRG 326 (1080)
T ss_pred ccccHHHHHHHHHHHHHhHhhhh------------------hHhhhccc-CCCcceeecCCCCCchhHHHHhhhhhhccc
Confidence 38999999999999997655421 11111111 234789999999999999999999887
Q ss_pred --CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHH
Q 008329 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (570)
Q Consensus 355 --g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~ 432 (570)
...|+.-++++.. ++|+|+. ++.++-+|++|+- ..+.|+|+||||.+++.|++....-+ ..+..+||.+
T Consensus 327 ~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k----~qPSIIffdeIdGlapvrSskqEqih---~SIvSTLLaL 397 (1080)
T KOG0732|consen 327 NRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQK----TQPSIIFFDEIDGLAPVRSSKQEQIH---ASIVSTLLAL 397 (1080)
T ss_pred ccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhc----cCceEEeccccccccccccchHHHhh---hhHHHHHHHh
Confidence 3456667777766 6899997 8999999998864 68999999999999999876443333 3489999999
Q ss_pred HcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 433 LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
|+|-. .+..+++|.|||.++ ++.+++ .+|||+.+.|++|+.+.
T Consensus 398 mdGld-------------------sRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~a 442 (1080)
T KOG0732|consen 398 MDGLD-------------------SRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDA 442 (1080)
T ss_pred ccCCC-------------------CCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHH
Confidence 99731 355689999999998 555554 44999999999998765
No 62
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.55 E-value=2.1e-14 Score=165.31 Aligned_cols=118 Identities=25% Similarity=0.342 Sum_probs=87.4
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.++ .|+|+++.++.+.+.+... .+.+++|+||||||||++|+++|+.
T Consensus 180 ~l~-~~igr~~ei~~~~~~L~~~--------------------------------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 180 KID-PLIGREDELERTIQVLCRR--------------------------------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CCC-cccCcHHHHHHHHHHHhcC--------------------------------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 344 4899999999888777411 1268999999999999999999988
Q ss_pred h----------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCch
Q 008329 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (570)
Q Consensus 354 l----------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~ 422 (570)
+ +..++.++++.+.. ..|.|+. +..+++++..+.. ..+.||||||+|.+.......+ ..
T Consensus 227 ~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~-----~~ 296 (731)
T TIGR02639 227 IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSG-----GS 296 (731)
T ss_pred HHhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCC-----cc
Confidence 7 67788888877653 4577875 7788888877542 3578999999999986532111 11
Q ss_pred HHHHHHHHHHHc
Q 008329 423 EGVQQALLKMLE 434 (570)
Q Consensus 423 e~vq~~LL~~LE 434 (570)
..+++.|+..|+
T Consensus 297 ~~~~~~L~~~l~ 308 (731)
T TIGR02639 297 MDASNLLKPALS 308 (731)
T ss_pred HHHHHHHHHHHh
Confidence 226777888776
No 63
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.55 E-value=4e-14 Score=163.04 Aligned_cols=167 Identities=25% Similarity=0.398 Sum_probs=123.4
Q ss_pred cCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 279 VIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
|+|++++++.|.+.+.....+ ++... .+ .++.++||+||||||||++|+++|+.++.
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~--------------------gi-~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHL--------------------GI-EPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhc--------------------CC-CCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 899999999999998643221 11111 11 12368999999999999999999999999
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~ 436 (570)
+++.++++++. ..+.|+. ...++.+|..+.. ..++||||||+|.+.+.++... .....++++.|+.+|++.
T Consensus 239 ~~i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 239 YFISINGPEIM-SKYYGES-EERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred eEEEEecHHHh-cccccHH-HHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhcc
Confidence 99999998877 5688876 6678888877642 4678999999999998754321 122345889999999852
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
. ....+++|+++|.++ ++..+.+ +||+..+.++.|+.+.
T Consensus 310 ~-------------------~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~ 350 (733)
T TIGR01243 310 K-------------------GRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRA 350 (733)
T ss_pred c-------------------cCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHH
Confidence 1 233577888888776 5555543 5899999999987654
No 64
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-14 Score=160.91 Aligned_cols=168 Identities=23% Similarity=0.347 Sum_probs=130.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.+.|.......+.+++...... .+..... -++.++|++||||||||.+++++|++.+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~---------------------~~prg~Ll~gppg~Gkt~l~~aVa~e~~ 243 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGI---------------------KPPRGLLLYGPPGTGKTFLVRAVANEYG 243 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCC---------------------CCCCCccccCCCCCChHHHHHHHHHHhC
Confidence 4789999999999988633321 1111111 1247899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..++.+++.++. .++.|++ ++.+++.|+.+... ..|.|+||||+|.+.++|..... + ..++..+|+.+|+|
T Consensus 244 a~~~~i~~peli-~k~~gEt-e~~LR~~f~~a~k~---~~psii~IdEld~l~p~r~~~~~---~-e~Rv~sqlltL~dg 314 (693)
T KOG0730|consen 244 AFLFLINGPELI-SKFPGET-ESNLRKAFAEALKF---QVPSIIFIDELDALCPKREGADD---V-ESRVVSQLLTLLDG 314 (693)
T ss_pred ceeEecccHHHH-Hhcccch-HHHHHHHHHHHhcc---CCCeeEeHHhHhhhCCcccccch---H-HHHHHHHHHHHHhh
Confidence 999999999988 5688987 88999999987642 22899999999999998764332 2 34589999999996
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
-. ...++++|+++|.++ ++..++|+|||+.+..+.|+...
T Consensus 315 ~~-------------------~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 315 LK-------------------PDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDG 355 (693)
T ss_pred Cc-------------------CcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchh
Confidence 21 245678888888877 77777777999999999998544
No 65
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.9e-15 Score=158.16 Aligned_cols=142 Identities=27% Similarity=0.415 Sum_probs=114.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC-cEEEeecccccccccccchhhHHHHHHhhhcchhHhh----hcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV-PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA----AQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~-~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~----~~~gILfIDEID 405 (570)
+++||+||||||||.+||.|.+.++. +=-.+++.++. .+|||++ +..+|++|..|+.+... ..-.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 58999999999999999999999964 33447888877 6799998 88999999988765432 233699999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCCh-HH-HHHhccccc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EK-TISERRQDS 483 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e~-~l~~Rrfd~ 483 (570)
+++..|.+..++..++. .+.|+||.-|||- -...|+++|..||..|| ++ +++.+|+.-
T Consensus 335 AICKqRGS~~g~TGVhD-~VVNQLLsKmDGV-------------------eqLNNILVIGMTNR~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVHD-TVVNQLLSKMDGV-------------------EQLNNILVIGMTNRKDLIDEALLRPGRLEV 394 (744)
T ss_pred HHHHhcCCCCCCCCccH-HHHHHHHHhcccH-------------------HhhhcEEEEeccCchhhHHHHhcCCCceEE
Confidence 99999988776666654 4899999999972 23678999999999994 33 445679988
Q ss_pred ccccCchhhhh
Q 008329 484 SIGFGAPVRAN 494 (570)
Q Consensus 484 ~I~f~~p~~e~ 494 (570)
.++..+|+++.
T Consensus 395 qmEIsLPDE~g 405 (744)
T KOG0741|consen 395 QMEISLPDEKG 405 (744)
T ss_pred EEEEeCCCccC
Confidence 88999998764
No 66
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=143.50 Aligned_cols=169 Identities=27% Similarity=0.353 Sum_probs=115.0
Q ss_pred ChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHH
Q 008329 267 TPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLL 346 (570)
Q Consensus 267 ~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtL 346 (570)
....+...+.+.++|+++++..+..++. ..+++||.||||||||++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------------------------~~~~vll~G~PG~gKT~l 59 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------------------------AGGHVLLEGPPGVGKTLL 59 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH----------------------------------cCCCEEEECCCCccHHHH
Confidence 4455677777889999999998877773 237999999999999999
Q ss_pred HHHHHHHhCCcEEEeeccc-ccccccccchhhHHH---HHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCch
Q 008329 347 AKTLARYVNVPFVIADATT-LTQAGYVGEDVESIL---YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (570)
Q Consensus 347 AraLA~~lg~~fv~i~~s~-l~~~g~vGe~~~~~l---r~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~ 422 (570)
|+.+|+.++.+|+++++++ +...+.+|....... ...+...+..+..+..+|+++|||++..++
T Consensus 60 a~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------ 127 (329)
T COG0714 60 ARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------ 127 (329)
T ss_pred HHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH------------
Confidence 9999999999999999995 555667776532221 111111111111122259999999999987
Q ss_pred HHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC------ChHHHHHhc-ccccccccCchhh
Q 008329 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV------DIEKTISER-RQDSSIGFGAPVR 492 (570)
Q Consensus 423 e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~------dLe~~l~~R-rfd~~I~f~~p~~ 492 (570)
+|++||++|+++++++++.+. .... ..+.+|+|+|.. .+.+++.+| .+...++|+....
T Consensus 128 --~q~aLl~~l~e~~vtv~~~~~-~~~~--------~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 128 --VQNALLEALEERQVTVPGLTT-IRLP--------PPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred --HHHHHHHHHhCcEEEECCcCC-cCCC--------CCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchH
Confidence 999999999999999976653 2222 224555555521 133444444 3666777764443
No 67
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.49 E-value=5.5e-13 Score=137.24 Aligned_cols=104 Identities=30% Similarity=0.464 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
++||+++++.|..++.....+ . ....+++|+||||||||++|+++|+.++.++
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~-------~--------------------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMR-------Q--------------------EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhc-------C--------------------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 799999999998887421110 0 0125799999999999999999999999887
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
..+.++..... ..+...+.. ...+.+|||||++.+.+. +++.|+.+|++..
T Consensus 59 ~~~~~~~~~~~--------~~l~~~l~~------~~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~ 109 (305)
T TIGR00635 59 KITSGPALEKP--------GDLAAILTN------LEEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFR 109 (305)
T ss_pred EEeccchhcCc--------hhHHHHHHh------cccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhh
Confidence 76665443211 111222211 135679999999999865 6778898998543
No 68
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=6.2e-13 Score=135.44 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=82.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeeccccc-ccccccchh----hHHHHHH--------------hhhcchhH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QAGYVGEDV----ESILYKL--------------LTVSDYNV 391 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~-~~g~vGe~~----~~~lr~l--------------f~~a~~~v 391 (570)
.++||+||||||||++|+++|+.++.+++.+++++-. ...++|... ...+.+. +.......
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 6899999999999999999999999999999987622 233443311 0011110 01111122
Q ss_pred hhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 392 ~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
+...+++|+|||++++.++ +++.|+.+||+..+.+++.+.. +. +.....++++|+|+|..
T Consensus 102 A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~----~~-~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT----SR-YVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC----Cc-eEecCCCCEEEEeeCCc
Confidence 3456789999999999877 9999999999888888654311 11 12234567888888865
No 69
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.48 E-value=8.5e-13 Score=138.22 Aligned_cols=105 Identities=29% Similarity=0.432 Sum_probs=74.6
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
++||+++++.|..++.....+ . .+..+++|+||||||||++|+++|+.++..+
T Consensus 27 ~vG~~~~~~~l~~~l~~~~~~-------~--------------------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 27 FIGQEKVKENLKIFIEAAKKR-------G--------------------EALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred hcCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 799999999998888522110 0 1236899999999999999999999999888
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCee
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v 438 (570)
..+++..+... ..+...+... ..+.||||||||.+... +++.|+..|++..+
T Consensus 80 ~~~~~~~~~~~--------~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~ 131 (328)
T PRK00080 80 RITSGPALEKP--------GDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRL 131 (328)
T ss_pred EEEecccccCh--------HHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcce
Confidence 77665543311 1122222221 35689999999999765 66778888886543
No 70
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.47 E-value=2e-13 Score=134.67 Aligned_cols=174 Identities=22% Similarity=0.379 Sum_probs=79.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|+||+.+|++|..+.. ..+++||+||||||||++|+.+...+.--
T Consensus 4 dI~GQe~aKrAL~iAAa----------------------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l 49 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA----------------------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPL 49 (206)
T ss_dssp CSSSTHHHHHHHHHHHH----------------------------------CC--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred hhcCcHHHHHHHHHHHc----------------------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence 48999999999998874 23799999999999999999999877210
Q ss_pred ----------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhh
Q 008329 358 ----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (570)
Q Consensus 358 ----------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~ 409 (570)
|.....+. +..+++|.. ....+..+..+.+||||+||+..+.+
T Consensus 50 ~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~-s~~~liGgg--------~~~~PGeislAh~GVLflDE~~ef~~ 120 (206)
T PF01078_consen 50 TEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSA-SEAALIGGG--------RPPRPGEISLAHRGVLFLDELNEFDR 120 (206)
T ss_dssp CEECCESS--S-TT---S---EEEE---EEEE-TT---HHHHHEEG--------GGEEE-CGGGGTTSEEEECETTTS-H
T ss_pred chHHHhhhccccccccCCCCCceecCCCcccCCCCc-CHHHHhCCC--------cCCCcCHHHHhcCCEEEechhhhcCH
Confidence 11000000 001111111 01123356678999999999999876
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc-C
Q 008329 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF-G 488 (570)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f-~ 488 (570)
. +.+.|++.||...+.|... +. ......++.+|+|.|.-. .++ +
T Consensus 121 ~--------------vld~Lr~ple~g~v~i~R~-------~~-~~~~Pa~f~lv~a~NPcp-------------CG~~~ 165 (206)
T PF01078_consen 121 S--------------VLDALRQPLEDGEVTISRA-------GG-SVTYPARFLLVAAMNPCP-------------CGYYG 165 (206)
T ss_dssp H--------------HHHHHHHHHHHSBEEEEET-------TE-EEEEB--EEEEEEE-S--------------------
T ss_pred H--------------HHHHHHHHHHCCeEEEEEC-------Cc-eEEEecccEEEEEecccc-------------ccccc
Confidence 6 9999999999777766222 22 223356788999888632 221 2
Q ss_pred chhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHH
Q 008329 489 APVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQ 544 (570)
Q Consensus 489 ~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseed 544 (570)
.+...+ .+.+.....++. + +.-.+++||++.+.++.++.+|
T Consensus 166 ~~~~~C-----~Cs~~~~~~Y~~---r-------lsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 166 DPDNRC-----RCSPRQIRRYQS---R-------LSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp --------------------------------------------------------
T ss_pred cccccc-----cccccccccccc---c-------ccccccccccccccccccccCC
Confidence 122222 112222222222 2 6689999999999999887664
No 71
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.7e-13 Score=140.09 Aligned_cols=142 Identities=25% Similarity=0.364 Sum_probs=105.4
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---------CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCe--E
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQG--I 398 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---------g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~g--I 398 (570)
.+-+||+||||||||+|++++|+.+ ...++++++.++. ++|.+|+ .+.+.++|++-...+. .+++ .
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~-d~~~lVf 253 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVE-DRGNLVF 253 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHh-CCCcEEE
Confidence 3567799999999999999999888 2457899999988 7899998 8999999988765443 2343 4
Q ss_pred EEEcchhhhhhhhhhcccCCCCc-hHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHH
Q 008329 399 VYIDEVDKITKKAESLNISRDVS-GEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI 476 (570)
Q Consensus 399 LfIDEID~L~~~r~~~~~~~~~~-~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l 476 (570)
|+|||++++...|.+...+.+.+ ..++.|+||..||.- -...|+++++|+|..+ ++.+.
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-------------------K~~~NvliL~TSNl~~siD~Af 314 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-------------------KRYPNVLILATSNLTDSIDVAF 314 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-------------------ccCCCEEEEeccchHHHHHHHh
Confidence 56899999999997766555543 358999999999931 1367899999999776 44443
Q ss_pred HhcccccccccCchhhhh
Q 008329 477 SERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 477 ~~Rrfd~~I~f~~p~~e~ 494 (570)
- .|-|.....+.|..+.
T Consensus 315 V-DRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 315 V-DRADIVFYVGPPTAEA 331 (423)
T ss_pred h-hHhhheeecCCccHHH
Confidence 3 3444555556665544
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.47 E-value=3.5e-13 Score=157.39 Aligned_cols=177 Identities=20% Similarity=0.234 Sum_probs=123.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|+++.++.+.+.+.+.. ..+++|+||||||||++|+.+|+.+
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~--------------------------------~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR--------------------------------QNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC--------------------------------cCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 48999999888887764221 2689999999999999999999876
Q ss_pred -------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+..++.++...+.. ..+.|+- +..+++++..... ...+.|||||||+.+...++..+ + ..+.
T Consensus 236 ~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~~~-~-----~d~~ 305 (852)
T TIGR03345 236 DVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQAG-Q-----GDAA 305 (852)
T ss_pred CCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCccc-c-----ccHH
Confidence 24567777766542 4577774 7778888876532 13578999999999987643211 1 1145
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHH
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~ 506 (570)
+.|+..|+ ...+.+|++|+..+..+.+
T Consensus 306 n~Lkp~l~-----------------------~G~l~~IgaTT~~e~~~~~------------------------------ 332 (852)
T TIGR03345 306 NLLKPALA-----------------------RGELRTIAATTWAEYKKYF------------------------------ 332 (852)
T ss_pred HHhhHHhh-----------------------CCCeEEEEecCHHHHhhhh------------------------------
Confidence 66777776 2347788888754321111
Q ss_pred HHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-hccccccccCCcccc
Q 008329 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-FYKLPMSLSNLTGTD 568 (570)
Q Consensus 507 ~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-~y~~~~~~~~v~~~~ 568 (570)
.++|.|.+||. ++.+.+++.++..+||...+ .|++. ++|..+|
T Consensus 333 ---------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~---~~v~i~d 376 (852)
T TIGR03345 333 ---------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKH---HGVLILD 376 (852)
T ss_pred ---------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhc---CCCeeCH
Confidence 15689999995 78999999999999986555 66643 4555443
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.5e-13 Score=145.94 Aligned_cols=105 Identities=30% Similarity=0.355 Sum_probs=72.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|||||++|+.+|+.+++.
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri-------------------------------~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKI-------------------------------GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 489999999999888851111 1347999999999999999999998763
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
+++++++. -.| ...++++..............|+||||+|.+...
T Consensus 68 ~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-----~~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--- 136 (484)
T PRK14956 68 NPIGNEPCNECTSCLEITKGISSDVLEIDAAS-----NRG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--- 136 (484)
T ss_pred cccCccccCCCcHHHHHHccCCccceeechhh-----ccc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH---
Confidence 23333211 111 1234444333322222345679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
++++||+.||+
T Consensus 137 -----------A~NALLKtLEE 147 (484)
T PRK14956 137 -----------SFNALLKTLEE 147 (484)
T ss_pred -----------HHHHHHHHhhc
Confidence 89999999994
No 74
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.45 E-value=3.2e-13 Score=141.49 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=107.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeeccccc-ccccccchhhHHHHH-----HhhhcchhHhhhcCeEEEEcch
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT-QAGYVGEDVESILYK-----LLTVSDYNVAAAQQGIVYIDEV 404 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~-~~g~vGe~~~~~lr~-----lf~~a~~~v~~~~~gILfIDEI 404 (570)
+++||.||||||||++|+.+|+.++.+++.+++++.. ..+++|..... ++. .|.......+...+++|++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~-l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIV-LKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceee-ccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 6899999999999999999999999999999988743 35577764210 110 1112222223457788999999
Q ss_pred hhhhhhhhhcccCCCCchHHHHHHHHHHHc-CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccc
Q 008329 405 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (570)
Q Consensus 405 D~L~~~r~~~~~~~~~~~e~vq~~LL~~LE-g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~ 483 (570)
|++.++ +++.|+.+|| +..+.+++.+.... ...++++|+|.|..+.-+.
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~--------~hp~FrviAT~Np~g~Gd~-------- 193 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIR--------AHPAFRLFATANTIGLGDT-------- 193 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEec--------CCCCeEEEEeeCCCCcCCC--------
Confidence 999887 8999999999 66787866443332 2446888888886431000
Q ss_pred ccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 484 SIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 484 ~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
. .+.+-. +.+++.+++||-.++.+..+++++..+||..
T Consensus 194 ---------~--------------G~y~Gt-------~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 194 ---------T--------------GLYHGT-------QQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred ---------C--------------cceeee-------ecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 0 000000 1255777777766667777777777777754
No 75
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.45 E-value=7.3e-13 Score=143.14 Aligned_cols=82 Identities=33% Similarity=0.505 Sum_probs=61.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
.+++|+||||||||++|+++|+.++.+++.+++.... ...+++.+..+........+.||||||+|.+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999988875421 1223444443322222236789999999999865
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcC
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|+..|++
T Consensus 108 --------------~q~~LL~~le~ 118 (413)
T PRK13342 108 --------------QQDALLPHVED 118 (413)
T ss_pred --------------HHHHHHHHhhc
Confidence 78999999983
No 76
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.45 E-value=7.9e-13 Score=126.66 Aligned_cols=146 Identities=23% Similarity=0.365 Sum_probs=97.4
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---C
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g 355 (570)
++|.+.+.+.+.+.+...- ..+.+|||+|++||||+.+|++|.+.. +
T Consensus 1 liG~s~~m~~~~~~~~~~a------------------------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~ 50 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA------------------------------SSDLPVLITGETGTGKELLARAIHNNSPRKN 50 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT------------------------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTT
T ss_pred CEeCCHHHHHHHHHHHHHh------------------------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhccc
Confidence 5788888888888774111 123689999999999999999999876 5
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhc-----------chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHH
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVS-----------DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-----------~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~ 424 (570)
.||+.++|+.+.+ +..-.++|... ...+..+.+|+||||||+.|.+.
T Consensus 51 ~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------- 108 (168)
T PF00158_consen 51 GPFISVNCAALPE--------ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------- 108 (168)
T ss_dssp S-EEEEETTTS-H--------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------
T ss_pred CCeEEEehhhhhc--------chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH--------------
Confidence 7999999988753 12223344321 12455678999999999999987
Q ss_pred HHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc
Q 008329 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (570)
Q Consensus 425 vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f 487 (570)
+|..|+++|+...+.- .+... . ...++++|++++. ++++.+..++|...+.|
T Consensus 109 ~Q~~Ll~~l~~~~~~~-------~g~~~--~-~~~~~RiI~st~~-~l~~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 109 LQAKLLRVLEEGKFTR-------LGSDK--P-VPVDVRIIASTSK-DLEELVEQGRFREDLYY 160 (168)
T ss_dssp HHHHHHHHHHHSEEEC-------CTSSS--E-EE--EEEEEEESS--HHHHHHTTSS-HHHHH
T ss_pred HHHHHHHHHhhchhcc-------ccccc--c-ccccceEEeecCc-CHHHHHHcCCChHHHHH
Confidence 9999999999433211 11111 1 2346999998886 58999998888665544
No 77
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=5.3e-13 Score=151.56 Aligned_cols=105 Identities=30% Similarity=0.392 Sum_probs=72.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... ..+.+||+||+|||||++|+.+|+.+++.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-------------------------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-------------------------------LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 48999999999998874111 01456899999999999999999998753
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
+++++..+- .| .+.+++++....+........|+||||+|.|...
T Consensus 66 ~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~-----rg---VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--- 134 (830)
T PRK07003 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASN-----RG---VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--- 134 (830)
T ss_pred cCCCCCCCcccHHHHHHhcCCCceEEEeccccc-----cc---HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH---
Confidence 333332210 11 1234444443332222345679999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|.||+.||+
T Consensus 135 -----------A~NALLKtLEE 145 (830)
T PRK07003 135 -----------AFNAMLKTLEE 145 (830)
T ss_pred -----------HHHHHHHHHHh
Confidence 78999999994
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.1e-13 Score=150.67 Aligned_cols=128 Identities=29% Similarity=0.406 Sum_probs=85.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
+|+||+++++.|..++..... .+.+||+||+|+|||++|+.+|+.+++
T Consensus 17 dVIGQe~vv~~L~~al~~gRL-------------------------------pHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRL-------------------------------HHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCC-------------------------------ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999998852111 145689999999999999999999976
Q ss_pred ----------------------------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 357 ----------------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 357 ----------------------------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
.++++++.+ -.| .+.++++.+...+........|+||||+|.|.
T Consensus 66 ~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-----~~g---VDdIReLie~~~~~P~~gr~KViIIDEah~Ls 137 (700)
T PRK12323 66 GADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-----NRG---VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT 137 (700)
T ss_pred CccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-----cCC---HHHHHHHHHHHHhchhcCCceEEEEEChHhcC
Confidence 122333221 111 23345555443332233456799999999998
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhc
Q 008329 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISER 479 (570)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~R 479 (570)
.. .+|+||+.||+ ...+++||++|+..+ +...++.|
T Consensus 138 ~~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 138 NH--------------AFNAMLKTLEE---------------------PPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred HH--------------HHHHHHHhhcc---------------------CCCCceEEEEeCChHhhhhHHHHH
Confidence 76 89999999994 134466666666544 55555544
No 79
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.43 E-value=1.8e-12 Score=133.41 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=106.4
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+++ ++||+.++..|..++.. . ...++|||||||||||+.|+++|++
T Consensus 34 t~de-~~gQe~vV~~L~~a~~~--~------------------------------~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 34 TFDE-LAGQEHVVQVLKNALLR--R------------------------------ILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cHHh-hcchHHHHHHHHHHHhh--c------------------------------CCceEEeeCCCCCcHhHHHHHHHHH
Confidence 3444 79999999999999852 0 1168999999999999999999999
Q ss_pred hCCc------EEEeecccccccccccchhhHHHHHHhhhc--chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 354 VNVP------FVIADATTLTQAGYVGEDVESILYKLLTVS--DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 354 lg~~------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a--~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
++++ +.+.++++-.....+.+. .+.+.++.... ..........|++|||.|.|..+ +
T Consensus 81 L~~~~~~~~rvl~lnaSderGisvvr~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------a 145 (346)
T KOG0989|consen 81 LNCEQLFPCRVLELNASDERGISVVREK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------A 145 (346)
T ss_pred hcCccccccchhhhcccccccccchhhh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------H
Confidence 9763 344455554433333332 11122221111 01111223479999999999977 9
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHH
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAV 504 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~ 504 (570)
|++|++.||.. ..+++||.-+|+.+ +...+..| +..++..++.++.
T Consensus 146 q~aLrr~mE~~---------------------s~~trFiLIcnylsrii~pi~SR------------C~KfrFk~L~d~~ 192 (346)
T KOG0989|consen 146 QAALRRTMEDF---------------------SRTTRFILICNYLSRIIRPLVSR------------CQKFRFKKLKDED 192 (346)
T ss_pred HHHHHHHHhcc---------------------ccceEEEEEcCChhhCChHHHhh------------HHHhcCCCcchHH
Confidence 99999999942 33466777777765 44444333 2233444566666
Q ss_pred HHHHHHhhcChhhHHhcCCChhHhccc
Q 008329 505 VTSSLMETVESSDLIAYGLIPEFVGRF 531 (570)
Q Consensus 505 ~~~~Ll~~l~~~dl~~~gl~Pefl~Rf 531 (570)
+..+|......+.+ .+.++.+.++
T Consensus 193 iv~rL~~Ia~~E~v---~~d~~al~~I 216 (346)
T KOG0989|consen 193 IVDRLEKIASKEGV---DIDDDALKLI 216 (346)
T ss_pred HHHHHHHHHHHhCC---CCCHHHHHHH
Confidence 66666654443331 2344444443
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.4e-12 Score=143.34 Aligned_cols=105 Identities=31% Similarity=0.426 Sum_probs=72.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.|+||+++++.|..++.... .++.+||+|||||||||+|+++|+.+++
T Consensus 15 divGq~~i~~~L~~~i~~~~-------------------------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS-------------------------------ISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 38999999999888774111 1245899999999999999999999865
Q ss_pred -----------------------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 357 -----------------------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
.++.+++++- .| ...++++...+..........||+|||+|.+...
T Consensus 64 ~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~-----~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--- 132 (472)
T PRK14962 64 NRKGVEPCNECRACRSIDEGTFMDVIELDAASN-----RG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--- 132 (472)
T ss_pred cCCCCCCCcccHHHHHHhcCCCCccEEEeCccc-----CC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH---
Confidence 3444544321 11 1234444433332222345679999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.|+.
T Consensus 133 -----------a~~~LLk~LE~ 143 (472)
T PRK14962 133 -----------AFNALLKTLEE 143 (472)
T ss_pred -----------HHHHHHHHHHh
Confidence 78999999983
No 81
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.41 E-value=1e-12 Score=137.52 Aligned_cols=127 Identities=24% Similarity=0.347 Sum_probs=95.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc---EEEeecccccccccccchhhHHHHHHhhhcchhH-hhhcCeEEEEcchhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYVGEDVESILYKLLTVSDYNV-AAAQQGIVYIDEVDK 406 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~---fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v-~~~~~gILfIDEID~ 406 (570)
..++||||||||||+||+.|+.-...+ |++++++.-. .+-+++.|+.+.... ...++.|||||||++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 578999999999999999999887655 7777765533 344677777765432 345778999999999
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccc
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~ 486 (570)
+... +|+.||..+|.. .+.+|.+|+-..
T Consensus 234 FNks--------------QQD~fLP~VE~G-----------------------~I~lIGATTENP--------------- 261 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVENG-----------------------DITLIGATTENP--------------- 261 (554)
T ss_pred hhhh--------------hhhcccceeccC-----------------------ceEEEecccCCC---------------
Confidence 9877 899999998832 256666654211
Q ss_pred cCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 487 f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
.+.++..+++|+ .++.+++|+.+++..||.+.
T Consensus 262 ---------------------------------SFqln~aLlSRC-~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 262 ---------------------------------SFQLNAALLSRC-RVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred ---------------------------------ccchhHHHHhcc-ceeEeccCCHHHHHHHHHHH
Confidence 123668899998 45678999999999999873
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.7e-12 Score=146.79 Aligned_cols=105 Identities=30% Similarity=0.358 Sum_probs=73.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... .+.+||+||+|+|||++|+++|+.+++.
T Consensus 17 divGQe~vv~~L~~~l~~~rl-------------------------------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRL-------------------------------HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 489999999999988852111 1346899999999999999999998763
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++++ ..+ ...++++.....+........|++|||+|.|...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~---VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--- 134 (647)
T PRK07994 66 TGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (647)
T ss_pred cCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCC---HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH---
Confidence 23333321 111 1234555444333222346679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 135 -----------a~NALLKtLEE 145 (647)
T PRK07994 135 -----------SFNALLKTLEE 145 (647)
T ss_pred -----------HHHHHHHHHHc
Confidence 89999999994
No 83
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.41 E-value=1.9e-12 Score=151.47 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=94.5
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.++. |+|+++.++.+.+.+.... ..+++|+||||||||++|+.+|..
T Consensus 176 ~l~~-vigr~~ei~~~i~iL~r~~--------------------------------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 176 KLDP-VIGRDEEIRRTIQVLQRRT--------------------------------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CCCc-CCCCHHHHHHHHHHHhcCC--------------------------------cCceEEECCCCCCHHHHHHHHHHH
Confidence 3444 8999999888888775211 268999999999999999999988
Q ss_pred h----------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCch
Q 008329 354 V----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (570)
Q Consensus 354 l----------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~ 422 (570)
+ +.+++.++...+.. ..|.|+. +..+++.+..... ...+.||||||+|.+.....+. .+
T Consensus 223 i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~~------~~ 292 (857)
T PRK10865 223 IINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKAD------GA 292 (857)
T ss_pred hhcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCCc------cc
Confidence 7 67788888777542 4577774 6777777765321 1357899999999998653211 11
Q ss_pred HHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 423 EGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 423 e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
..+++.|...++ ...+.+|++|+..+
T Consensus 293 ~d~~~~lkp~l~-----------------------~g~l~~IgaTt~~e 318 (857)
T PRK10865 293 MDAGNMLKPALA-----------------------RGELHCVGATTLDE 318 (857)
T ss_pred hhHHHHhcchhh-----------------------cCCCeEEEcCCCHH
Confidence 236777777665 33478889888754
No 84
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=2.1e-12 Score=149.01 Aligned_cols=105 Identities=28% Similarity=0.354 Sum_probs=72.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 17 dIIGQe~Iv~~LknaI~~~rl-------------------------------~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQRL-------------------------------HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 489999999999888751111 1345899999999999999999999764
Q ss_pred E------------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 F------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 f------------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
- +.+++++ ..+ ...++++.....+........|+||||+|.|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~~~DviEidAas-----~~k---VDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--- 134 (944)
T PRK14949 66 QGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS-----RTK---VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--- 134 (944)
T ss_pred cCCCCCCCCCchHHHHHhcCCCceEEEecccc-----ccC---HHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH---
Confidence 1 1111111 111 1234444443332222346679999999999866
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 135 -----------AqNALLKtLEE 145 (944)
T PRK14949 135 -----------SFNALLKTLEE 145 (944)
T ss_pred -----------HHHHHHHHHhc
Confidence 89999999994
No 85
>PLN03025 replication factor C subunit; Provisional
Probab=99.40 E-value=1.2e-12 Score=136.66 Aligned_cols=105 Identities=30% Similarity=0.392 Sum_probs=69.6
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC--
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~-- 356 (570)
|+||+++++.|..++... ..+++||+||||||||++|+++|+.+.+
T Consensus 15 ~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG--------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred hcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 799999999988776410 1157999999999999999999998733
Q ss_pred ---cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHH
Q 008329 357 ---PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (570)
Q Consensus 357 ---~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~L 433 (570)
.++++++++.. |.+..+...+.+.............|++|||+|.+... .|++|++.|
T Consensus 63 ~~~~~~eln~sd~~-----~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~l 123 (319)
T PLN03025 63 YKEAVLELNASDDR-----GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTM 123 (319)
T ss_pred Cccceeeecccccc-----cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHH
Confidence 34555554422 22111111112221111111134679999999999866 789999999
Q ss_pred c
Q 008329 434 E 434 (570)
Q Consensus 434 E 434 (570)
|
T Consensus 124 E 124 (319)
T PLN03025 124 E 124 (319)
T ss_pred h
Confidence 8
No 86
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=1.4e-12 Score=150.22 Aligned_cols=177 Identities=20% Similarity=0.268 Sum_probs=120.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|.+..++.+.+.+... .+.++||+||||||||++|+.+|..+
T Consensus 187 ~liGR~~ei~~~i~iL~r~--------------------------------~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999887521 12688999999999999999999764
Q ss_pred -------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+..++.++...+.. ..|.|+. +..++.++.... ...++||||||||.+...+... ..+..+.
T Consensus 235 ~vP~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l~----~~~~~ILfIDEIh~L~g~g~~~-----~g~~d~~ 304 (758)
T PRK11034 235 DVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLE----QDTNSILFIDEIHTIIGAGAAS-----GGQVDAA 304 (758)
T ss_pred CCCchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHHH----hcCCCEEEeccHHHHhccCCCC-----CcHHHHH
Confidence 44555555544332 3466664 666666665432 2467899999999998653211 1122356
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHH
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~ 506 (570)
+.|..+++ ..++.+|++|+..+..+.+
T Consensus 305 nlLkp~L~-----------------------~g~i~vIgATt~~E~~~~~------------------------------ 331 (758)
T PRK11034 305 NLIKPLLS-----------------------SGKIRVIGSTTYQEFSNIF------------------------------ 331 (758)
T ss_pred HHHHHHHh-----------------------CCCeEEEecCChHHHHHHh------------------------------
Confidence 66666665 2347788888864322111
Q ss_pred HHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-hccccccccCCcccc
Q 008329 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-FYKLPMSLSNLTGTD 568 (570)
Q Consensus 507 ~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-~y~~~~~~~~v~~~~ 568 (570)
..+|.|.+||. .+.+++++.++..+||...+ .|+ ..++|..+|
T Consensus 332 ---------------~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye---~~h~v~i~~ 375 (758)
T PRK11034 332 ---------------EKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYE---AHHDVRYTA 375 (758)
T ss_pred ---------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhh---hccCCCcCH
Confidence 14588888995 68899999999999998766 666 345665543
No 87
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.40 E-value=1e-13 Score=127.25 Aligned_cols=112 Identities=28% Similarity=0.309 Sum_probs=69.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecc-cccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADAT-TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s-~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
|+||+|+||+|||++|+++|+.++..|.+++++ ++..++++|..+.+.-...|.-.+.. --..|+++|||.++.++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GP---if~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGP---IFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-T---T-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecCh---hhhceeeecccccCCHH
Confidence 689999999999999999999999999999987 56666666665322111222222111 23469999999999998
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
+|++||++|++++|++ .|..+.. .+...+|+|.|..
T Consensus 78 --------------tQsAlLeam~Er~Vt~--~g~~~~l--------p~pf~ViATqNp~ 113 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTI--DGQTYPL--------PDPFFVIATQNPV 113 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEE--TTEEEE----------SS-EEEEEE-TT
T ss_pred --------------HHHHHHHHHHcCeEEe--CCEEEEC--------CCcEEEEEecCcc
Confidence 9999999999998887 3333322 2336667777754
No 88
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.40 E-value=1.1e-12 Score=130.71 Aligned_cols=156 Identities=26% Similarity=0.330 Sum_probs=112.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
+|+|.++.++.|...... ..-+|++|.|||||||||.+.++|+++-.
T Consensus 28 dIVGNe~tv~rl~via~~--------------------------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~ 75 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKE--------------------------------GNMPNLIISGPPGTGKTTSILCLARELLGD 75 (333)
T ss_pred HhhCCHHHHHHHHHHHHc--------------------------------CCCCceEeeCCCCCchhhHHHHHHHHHhCh
Confidence 589999999999887640 01269999999999999999999988733
Q ss_pred ----cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHH
Q 008329 357 ----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (570)
Q Consensus 357 ----~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~ 432 (570)
-+.++++++ -.|-++.+.-.+.|...+......+..||++||+|+|..- +|++|.+.
T Consensus 76 ~~ke~vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRt 136 (333)
T KOG0991|consen 76 SYKEAVLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRT 136 (333)
T ss_pred hhhhHhhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHH
Confidence 245666655 3455555555677776655555567789999999999864 89999999
Q ss_pred HcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHh
Q 008329 433 LEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME 511 (570)
Q Consensus 433 LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~ 511 (570)
|| +..+..+|+.++|..+ +-+.+..| ++.+|...++++.+...+++
T Consensus 137 ME---------------------iyS~ttRFalaCN~s~KIiEPIQSR------------CAiLRysklsd~qiL~Rl~~ 183 (333)
T KOG0991|consen 137 ME---------------------IYSNTTRFALACNQSEKIIEPIQSR------------CAILRYSKLSDQQILKRLLE 183 (333)
T ss_pred HH---------------------HHcccchhhhhhcchhhhhhhHHhh------------hHhhhhcccCHHHHHHHHHH
Confidence 99 1233356667777655 33333222 45566777888889988888
Q ss_pred hcChhh
Q 008329 512 TVESSD 517 (570)
Q Consensus 512 ~l~~~d 517 (570)
....+.
T Consensus 184 v~k~Ek 189 (333)
T KOG0991|consen 184 VAKAEK 189 (333)
T ss_pred HHHHhC
Confidence 776654
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=3e-12 Score=137.87 Aligned_cols=150 Identities=21% Similarity=0.336 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
|+||+.+++.|..++........ ..... .++.+||+||+|+|||++|+++|+.+.+.-
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~---------------------~~~~~-l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVA---------------------AAGSG-MTHAWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred ccChHHHHHHHHHHHHhcccccc---------------------ccCCC-CCeEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 89999999999999963221000 00000 135789999999999999999999885531
Q ss_pred -----------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcc
Q 008329 359 -----------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLN 415 (570)
Q Consensus 359 -----------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~ 415 (570)
..+.... ..++ ...+++++..+..........|++|||+|+|.+.
T Consensus 65 ~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~----~~i~---i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~----- 132 (394)
T PRK07940 65 PDEPGCGECRACRTVLAGTHPDVRVVAPEG----LSIG---VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER----- 132 (394)
T ss_pred CCCCCCCCCHHHHHHhcCCCCCEEEecccc----ccCC---HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----
Confidence 1111100 0111 2235566555433223356679999999999876
Q ss_pred cCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhh
Q 008329 416 ISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 416 ~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e 493 (570)
.+++||+.||+- ....+.|++|++...+.+.++.|- ..+.|..|+.+
T Consensus 133 ---------aanaLLk~LEep--------------------~~~~~fIL~a~~~~~llpTIrSRc--~~i~f~~~~~~ 179 (394)
T PRK07940 133 ---------AANALLKAVEEP--------------------PPRTVWLLCAPSPEDVLPTIRSRC--RHVALRTPSVE 179 (394)
T ss_pred ---------HHHHHHHHhhcC--------------------CCCCeEEEEECChHHChHHHHhhC--eEEECCCCCHH
Confidence 789999999941 112244555555555666665443 36667666544
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=2.1e-12 Score=143.24 Aligned_cols=105 Identities=30% Similarity=0.388 Sum_probs=75.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 17 divGq~~v~~~L~~~~~~~~l-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYL-------------------------------HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-------------------------------CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999998852111 2457899999999999999999999753
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++++++++ ..+ ...++++.....+.....+..|++|||+|.|...
T Consensus 66 ~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~---v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--- 134 (509)
T PRK14958 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTK---VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--- 134 (509)
T ss_pred CCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCC---HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---
Confidence 44444332 111 2234555544333333345679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 135 -----------a~naLLk~LEe 145 (509)
T PRK14958 135 -----------SFNALLKTLEE 145 (509)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999994
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3e-12 Score=144.10 Aligned_cols=105 Identities=29% Similarity=0.356 Sum_probs=75.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+++
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-------------------------------l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-------------------------------LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999998885111 1256789999999999999999999876
Q ss_pred -----------------------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 357 -----------------------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
.++.+++++- .+ ...++++.....+.....+..|++|||+|.|...
T Consensus 65 ~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~-----~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--- 133 (702)
T PRK14960 65 TGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR-----TK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--- 133 (702)
T ss_pred cCCCCCCCccCHHHHHHhcCCCCceEEeccccc-----CC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH---
Confidence 2344444321 11 2335555554443333346679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++|++.||.
T Consensus 134 -----------A~NALLKtLEE 144 (702)
T PRK14960 134 -----------SFNALLKTLEE 144 (702)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999994
No 92
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=5.6e-12 Score=146.43 Aligned_cols=105 Identities=33% Similarity=0.360 Sum_probs=72.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|+.++..... .+.+||+||+|||||++|+.||+.++|.
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri-------------------------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRI-------------------------------NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 389999999999988851111 1347899999999999999999999752
Q ss_pred --------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhh
Q 008329 358 --------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 358 --------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r 411 (570)
++++++.+ ..| .+.++++.....+........|+||||+|.|...
T Consensus 65 ~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas-----~~~---Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~- 135 (824)
T PRK07764 65 EGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS-----HGG---VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ- 135 (824)
T ss_pred cCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc-----cCC---HHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-
Confidence 22222211 111 1234444333322222356789999999999876
Q ss_pred hhcccCCCCchHHHHHHHHHHHcC
Q 008329 412 ESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 412 ~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|.||+.||+
T Consensus 136 -------------a~NaLLK~LEE 146 (824)
T PRK07764 136 -------------GFNALLKIVEE 146 (824)
T ss_pred -------------HHHHHHHHHhC
Confidence 89999999994
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=7.3e-12 Score=133.30 Aligned_cols=105 Identities=28% Similarity=0.344 Sum_probs=69.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... -++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~-------------------------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR-------------------------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 48999999999988884110 11456899999999999999999998642
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++++ .. . ...++++..............|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~-----~~--~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--- 134 (363)
T PRK14961 66 NGITSNPCRKCIICKEIEKGLCLDLIEIDAAS-----RT--K-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--- 134 (363)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceEEecccc-----cC--C-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH---
Confidence 12222111 00 1 1223444333222112235579999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||.
T Consensus 135 -----------a~naLLk~lEe 145 (363)
T PRK14961 135 -----------SFNALLKTLEE 145 (363)
T ss_pred -----------HHHHHHHHHhc
Confidence 78899999994
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=5.3e-12 Score=147.31 Aligned_cols=128 Identities=23% Similarity=0.277 Sum_probs=94.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|.++.++.+.+.+... .+.+++|+||||||||++|+.+|..+
T Consensus 180 ~~igr~~ei~~~~~~L~r~--------------------------------~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--------------------------------TKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--------------------------------ccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3899999999999988521 12689999999999999999999876
Q ss_pred -------CCcEEEeeccccc-ccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 -------g~~fv~i~~s~l~-~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.+++.++++++. ...|.|+. +..+++++..+.. ..+.||||||+|.+....... .+ ..+.
T Consensus 228 ~vp~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~---g~---~~~a 296 (821)
T CHL00095 228 DVPDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAE---GA---IDAA 296 (821)
T ss_pred CCChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCC---Cc---ccHH
Confidence 4678899988754 35688874 7778888876532 357899999999998653221 11 1267
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
+.|...+. ...+.+|++|+..+
T Consensus 297 ~lLkp~l~-----------------------rg~l~~IgaTt~~e 318 (821)
T CHL00095 297 NILKPALA-----------------------RGELQCIGATTLDE 318 (821)
T ss_pred HHhHHHHh-----------------------CCCcEEEEeCCHHH
Confidence 77777766 22367788888654
No 95
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.35 E-value=8.3e-13 Score=120.58 Aligned_cols=124 Identities=25% Similarity=0.373 Sum_probs=77.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
+|+|+||||||||++|+.+|+.++.+++.++++.-.+ ..++|.-........+...........++|++|||++++.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 5899999999999999999999999999999887443 223332100000000111111112347899999999999866
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
+++.|+.++|+..+.+++.+......... ....++.+|+|+|..+
T Consensus 81 --------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 81 --------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPRD 125 (139)
T ss_dssp --------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSST
T ss_pred --------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCCC
Confidence 99999999998877776554333222211 1223689999998765
No 96
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.33 E-value=9.7e-12 Score=131.26 Aligned_cols=139 Identities=22% Similarity=0.329 Sum_probs=83.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
.|+||+++++.|..++.. -..+|+||.|+||||||++|+++++.+.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~--------------------------------~~~~~vLl~G~pG~gKT~lar~la~llP~~ 56 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAID--------------------------------PGIGGVLVFGDRGTGKSTAVRALAALLPLI 56 (334)
T ss_pred HhCCHHHHHHHHHHHHhc--------------------------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCc
Confidence 389999999988765420 0116899999999999999999999983
Q ss_pred -----Cc--EEEeecc-c----------------------ccccccccch-hhHHHH-HHhhhcchhHhhhcCeEEEEcc
Q 008329 356 -----VP--FVIADAT-T----------------------LTQAGYVGED-VESILY-KLLTVSDYNVAAAQQGIVYIDE 403 (570)
Q Consensus 356 -----~~--fv~i~~s-~----------------------l~~~g~vGe~-~~~~lr-~lf~~a~~~v~~~~~gILfIDE 403 (570)
++ +..+.+. + .++...+|.- +...+. .-+......+..+.+++||+||
T Consensus 57 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDE 136 (334)
T PRK13407 57 KAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDE 136 (334)
T ss_pred chhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecC
Confidence 21 1111111 0 0111233321 111110 0011111223345678999999
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 404 ID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
++.+.++ +|+.|++.|+...+++...|... .. ..++++|++.|..
T Consensus 137 Inrl~~~--------------~q~~Lle~mee~~v~v~r~G~~~-------~~-p~rfiviAt~NP~ 181 (334)
T PRK13407 137 VNLLEDH--------------IVDLLLDVAQSGENVVEREGLSI-------RH-PARFVLVGSGNPE 181 (334)
T ss_pred hHhCCHH--------------HHHHHHHHHHcCCeEEEECCeEE-------ec-CCCEEEEecCCcc
Confidence 9999877 99999999996655442223211 11 3357778877753
No 97
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=9.9e-12 Score=145.58 Aligned_cols=168 Identities=23% Similarity=0.243 Sum_probs=113.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|+++.++.+.+.+.+.. ..+++|+||||||||++|+.+|..+
T Consensus 174 ~~igr~~ei~~~~~~l~r~~--------------------------------~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT--------------------------------KNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC--------------------------------CCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 38999999888888775211 2688999999999999999999876
Q ss_pred -------CCcEEEeeccccc-ccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 -------NVPFVIADATTLT-QAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 -------g~~fv~i~~s~l~-~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.+++.++...+. ...|.|+. +..+..++..... ...+.||||||||.+....... .+..++
T Consensus 222 ~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~~------~~~d~~ 291 (852)
T TIGR03346 222 DVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKAE------GAMDAG 291 (852)
T ss_pred CCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCCc------chhHHH
Confidence 5677888776654 23577764 6677777765421 1357899999999998642211 112255
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHH
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~ 506 (570)
+.|...++ ...+.+|++|+..+....+
T Consensus 292 ~~Lk~~l~-----------------------~g~i~~IgaTt~~e~r~~~------------------------------ 318 (852)
T TIGR03346 292 NMLKPALA-----------------------RGELHCIGATTLDEYRKYI------------------------------ 318 (852)
T ss_pred HHhchhhh-----------------------cCceEEEEeCcHHHHHHHh------------------------------
Confidence 66655554 3347788888864321111
Q ss_pred HHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-hcc
Q 008329 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-FYK 556 (570)
Q Consensus 507 ~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-~y~ 556 (570)
.+++.+.+||.. +.+..++.++..+||...+ .|+
T Consensus 319 ---------------~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e 353 (852)
T TIGR03346 319 ---------------EKDAALERRFQP-VFVDEPTVEDTISILRGLKERYE 353 (852)
T ss_pred ---------------hcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhc
Confidence 145778888854 5677778888888887654 555
No 98
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.32 E-value=1.6e-11 Score=134.34 Aligned_cols=123 Identities=19% Similarity=0.211 Sum_probs=82.1
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
...+.+.+.+.|+|++++++.+..++. ..+++||+||||||||++|
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal----------------------------------ag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc----------------------------------cCCCEEEECCCChhHHHHH
Confidence 456888999999999999998887773 2479999999999999999
Q ss_pred HHHHHHhCC--cEEEeecccccccccccchhhHHHH--HHhhhc-chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCch
Q 008329 348 KTLARYVNV--PFVIADATTLTQAGYVGEDVESILY--KLLTVS-DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSG 422 (570)
Q Consensus 348 raLA~~lg~--~fv~i~~s~l~~~g~vGe~~~~~lr--~lf~~a-~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~ 422 (570)
++++...+. +|....+.-.+..+.+|........ ..|... ...+ ....+||+|||.++.++
T Consensus 57 raLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L--~~A~lLfLDEI~rasp~------------ 122 (498)
T PRK13531 57 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYL--PEAEIVFLDEIWKAGPA------------ 122 (498)
T ss_pred HHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcc--ccccEEeecccccCCHH------------
Confidence 999998743 4443333211123344431001100 111100 0001 01239999999999887
Q ss_pred HHHHHHHHHHHcCCeeee
Q 008329 423 EGVQQALLKMLEGTVVNV 440 (570)
Q Consensus 423 e~vq~~LL~~LEg~~v~i 440 (570)
+|++||++|++..+++
T Consensus 123 --~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 123 --ILNTLLTAINERRFRN 138 (498)
T ss_pred --HHHHHHHHHHhCeEec
Confidence 9999999998776654
No 99
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.32 E-value=1.3e-11 Score=131.01 Aligned_cols=134 Identities=25% Similarity=0.408 Sum_probs=82.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
.|+||+++|..|...+.++ ..+++||.|++|||||++|+++++.+.
T Consensus 18 ~ivGq~~~k~al~~~~~~p--------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP--------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred HHhChHHHHHHHHHhccCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4899999999998877421 126899999999999999999988872
Q ss_pred -----CcEEEeeccc---------------------------------ccccccccc-hhhHHHHHHhhhc-----chhH
Q 008329 356 -----VPFVIADATT---------------------------------LTQAGYVGE-DVESILYKLLTVS-----DYNV 391 (570)
Q Consensus 356 -----~~fv~i~~s~---------------------------------l~~~g~vGe-~~~~~lr~lf~~a-----~~~v 391 (570)
.||. .+... .++..++|. +++. .+... ...+
T Consensus 66 ~~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~----al~~g~~~~~~GlL 140 (350)
T CHL00081 66 EVVKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEK----ALTEGVKAFEPGLL 140 (350)
T ss_pred CccCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHH----HhhcCcccccCCee
Confidence 2232 00000 000111221 1111 12111 1223
Q ss_pred hhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 392 ~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
..+.+++||+||++.+.+. +|+.|++.|+...+.+...|.. ... ..++++|++.|..
T Consensus 141 ~~A~~GiL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s-------~~~-p~rfiviaT~np~ 197 (350)
T CHL00081 141 AKANRGILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGIS-------IRH-PARFVLVGSGNPE 197 (350)
T ss_pred eecCCCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCee-------eec-CCCEEEEeccCcc
Confidence 4567899999999999987 9999999998655444222211 122 2357777776653
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.4e-11 Score=136.54 Aligned_cols=105 Identities=32% Similarity=0.394 Sum_probs=74.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+++||+.+++.|..++.... .++++||+||+|||||++|+++|+.+++.
T Consensus 22 dliGq~~vv~~L~~ai~~~r-------------------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-------------------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 48999999999988774111 12678999999999999999999998653
Q ss_pred E----------------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhh
Q 008329 358 F----------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (570)
Q Consensus 358 f----------------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~ 409 (570)
. +++++++ -.| ...++++++.+......+...|++|||+|.+..
T Consensus 71 ~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas-----~~~---vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~ 142 (507)
T PRK06645 71 ALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAAS-----KTS---VDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK 142 (507)
T ss_pred cccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccC-----CCC---HHHHHHHHHHHHhccccCCcEEEEEEChhhcCH
Confidence 1 2222211 111 234556665554433445678999999999976
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 410 KAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
. .+++|++.||.
T Consensus 143 ~--------------a~naLLk~LEe 154 (507)
T PRK06645 143 G--------------AFNALLKTLEE 154 (507)
T ss_pred H--------------HHHHHHHHHhh
Confidence 5 78999999994
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.2e-11 Score=136.38 Aligned_cols=105 Identities=28% Similarity=0.326 Sum_probs=75.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
+|+||+.+++.|..++.... -++++||+||+|+||||+|+.+|+.+++
T Consensus 14 dliGQe~vv~~L~~a~~~~r-------------------------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK-------------------------------IPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 48999999999988774110 1257999999999999999999997743
Q ss_pred -----------------------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 357 -----------------------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
+++++++++- .| .+.++++...+.+....+...|++|||+|.+...
T Consensus 63 ~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~-----~~---vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~--- 131 (491)
T PRK14964 63 NGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN-----TS---VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS--- 131 (491)
T ss_pred CCCCCCCccccHHHHHHhccCCCCEEEEecccC-----CC---HHHHHHHHHHHHhccccCCceEEEEeChHhCCHH---
Confidence 2345554331 12 2335555555444333456789999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 132 -----------A~NaLLK~LEe 142 (491)
T PRK14964 132 -----------AFNALLKTLEE 142 (491)
T ss_pred -----------HHHHHHHHHhC
Confidence 79999999994
No 102
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.5e-11 Score=137.12 Aligned_cols=105 Identities=30% Similarity=0.373 Sum_probs=71.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+.+|+.+++
T Consensus 17 diiGq~~~v~~L~~~i~~~r-------------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-------------------------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999988885110 0135789999999999999999998864
Q ss_pred -----------------------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 357 -----------------------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
.++.+++.. ..|. ..++++..............|++|||+|++...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-----~~gv---d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--- 134 (546)
T PRK14957 66 TGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-----RTGV---EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--- 134 (546)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEeeccc-----ccCH---HHHHHHHHHHHhhhhcCCcEEEEEechhhccHH---
Confidence 223333211 1222 123444433332223346679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (546)
T PRK14957 135 -----------SFNALLKTLEE 145 (546)
T ss_pred -----------HHHHHHHHHhc
Confidence 89999999994
No 103
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.5e-11 Score=138.28 Aligned_cols=105 Identities=33% Similarity=0.368 Sum_probs=72.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|||||++|+++|+.+++.
T Consensus 14 eivGq~~i~~~L~~~i~~~r~-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGRI-------------------------------NHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 489999999999998851110 1346899999999999999999988642
Q ss_pred --------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhh
Q 008329 358 --------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 358 --------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r 411 (570)
++++++++ ..| .+.++++.....+........|++|||+|.|...
T Consensus 63 ~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-----~~g---vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~- 133 (584)
T PRK14952 63 QGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-----HGG---VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA- 133 (584)
T ss_pred cCCCCCcccccHHHHHhhcccCCCceEEEecccc-----ccC---HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-
Confidence 22222211 112 2234444444333333356779999999999865
Q ss_pred hhcccCCCCchHHHHHHHHHHHcC
Q 008329 412 ESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 412 ~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||.
T Consensus 134 -------------A~NALLK~LEE 144 (584)
T PRK14952 134 -------------GFNALLKIVEE 144 (584)
T ss_pred -------------HHHHHHHHHhc
Confidence 89999999994
No 104
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.3e-11 Score=130.81 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=113.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
++.||+||||||||+++-|+|++++..++-++-+++.. ...+++++...+ ..+||+|++||.....
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--------n~dLr~LL~~t~------~kSIivIEDIDcs~~l 301 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--------DSDLRHLLLATP------NKSILLIEDIDCSFDL 301 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC--------cHHHHHHHHhCC------CCcEEEEeeccccccc
Confidence 79999999999999999999999999999988877653 223777776653 6789999999998765
Q ss_pred hhhcccCCCC----chHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHH-Hhcccccc
Q 008329 411 AESLNISRDV----SGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSS 484 (570)
Q Consensus 411 r~~~~~~~~~----~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l-~~Rrfd~~ 484 (570)
++........ .+.-+...||..+||-.- -..+..++|+|||..+ |+.++ +++|.|-+
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS-----------------scg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWS-----------------SCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhccccc-----------------cCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 4443321111 122467889999997321 0123467888999988 65555 45699999
Q ss_pred cccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 485 IGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 485 I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
|+++--.-+.++ .-....+.-++ ...+..-|...+.=..+++.|+.+-+-.
T Consensus 365 I~mgyCtf~~fK----------~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 365 IYMGYCTFEAFK----------TLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred EEcCCCCHHHHH----------HHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 887654444321 11112222110 1334333433444556788887776654
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.7e-11 Score=137.92 Aligned_cols=105 Identities=30% Similarity=0.364 Sum_probs=71.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... -...+||+||+|+|||++|+++|+.+++.
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-------------------------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-------------------------------VAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 47999999999998885211 02578899999999999999999998753
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++++++.+ ..+- ..++.+..............||||||+|.|...
T Consensus 66 ~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~I---d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~--- 134 (624)
T PRK14959 66 TAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGI---DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE--- 134 (624)
T ss_pred CCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCH---HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH---
Confidence 33333321 1111 223333222222122345679999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.||.
T Consensus 135 -----------a~naLLk~LEE 145 (624)
T PRK14959 135 -----------AFNALLKTLEE 145 (624)
T ss_pred -----------HHHHHHHHhhc
Confidence 78999999984
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.7e-11 Score=138.48 Aligned_cols=105 Identities=29% Similarity=0.413 Sum_probs=72.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 dviGQe~vv~~L~~~l~~~rl-------------------------------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRL-------------------------------HHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 378999999999998852111 1456899999999999999999998752
Q ss_pred -----------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 358 -----------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 358 -----------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
++.+++++ -.| .+.++++.....+........|++|||+|.|.
T Consensus 66 ~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas-----~~~---Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 66 GPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS-----NRG---VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT 137 (618)
T ss_pred CcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc-----ccC---HHHHHHHHHHHHhCcccCCceEEEEEChhhCC
Confidence 22222221 111 12345555443332223456799999999998
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 409 KKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.. .+|.||+.||+
T Consensus 138 ~~--------------a~NaLLKtLEE 150 (618)
T PRK14951 138 NT--------------AFNAMLKTLEE 150 (618)
T ss_pred HH--------------HHHHHHHhccc
Confidence 76 78999999994
No 107
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.29 E-value=1.8e-11 Score=136.50 Aligned_cols=116 Identities=30% Similarity=0.450 Sum_probs=76.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++||+.+++.|..++.. ..+.++||+||||||||++|+++++.+
T Consensus 66 ~iiGqs~~i~~l~~al~~--------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 113 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--------------------------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKN 113 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 489999999988866530 012689999999999999999998653
Q ss_pred -------CCcEEEeecccc--ccc----ccccchhhHHHH---HHhhh------cchhHhhhcCeEEEEcchhhhhhhhh
Q 008329 355 -------NVPFVIADATTL--TQA----GYVGEDVESILY---KLLTV------SDYNVAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 355 -------g~~fv~i~~s~l--~~~----g~vGe~~~~~lr---~lf~~------a~~~v~~~~~gILfIDEID~L~~~r~ 412 (570)
+.+|+.++|+.. .+. ..+|.. ..... ..+.. ....+..+.+++||||||+.|.+.
T Consensus 114 ~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~-~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-- 190 (531)
T TIGR02902 114 PASPFKEGAAFVEIDATTARFDERGIADPLIGSV-HDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-- 190 (531)
T ss_pred cCCCcCCCCCEEEEccccccCCccccchhhcCCc-ccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--
Confidence 367899998642 111 111110 00000 00100 011233467899999999999987
Q ss_pred hcccCCCCchHHHHHHHHHHHcCCeeee
Q 008329 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg~~v~i 440 (570)
+|+.|++.||+..+.+
T Consensus 191 ------------~q~~LL~~Le~~~~~~ 206 (531)
T TIGR02902 191 ------------QMNKLLKVLEDRKVFL 206 (531)
T ss_pred ------------HHHHHHHHHHhCeeee
Confidence 8999999999665544
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.29 E-value=2.3e-11 Score=139.79 Aligned_cols=82 Identities=29% Similarity=0.421 Sum_probs=58.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHh-hhcCeEEEEcchhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVA-AAQQGIVYIDEVDKITK 409 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~-~~~~gILfIDEID~L~~ 409 (570)
.+++|+||||||||++|+++|+..+.+++.+++.... .+.+++.+..+..... .....+|||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 5899999999999999999999999999888775311 1112222222211111 13457999999999986
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 410 KAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
. .|+.|+..+++
T Consensus 124 ~--------------qQdaLL~~lE~ 135 (725)
T PRK13341 124 A--------------QQDALLPWVEN 135 (725)
T ss_pred H--------------HHHHHHHHhcC
Confidence 5 78899999883
No 109
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.28 E-value=8.2e-12 Score=135.34 Aligned_cols=151 Identities=22% Similarity=0.386 Sum_probs=113.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.+||++.|...+.+.|.. +.-....|||.|++||||..+|++|.+..
T Consensus 224 ~iIG~S~am~~ll~~i~~------------------------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~ 273 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEV------------------------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRR 273 (550)
T ss_pred cceecCHHHHHHHHHHHH------------------------------HhcCCCeEEEecCCCccHHHHHHHHHhhCccc
Confidence 489999999988888841 11123689999999999999999999887
Q ss_pred CCcEEEeecccccc----cccccchhhHHHHHHhhhcch----hHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSDY----NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 g~~fv~i~~s~l~~----~g~vGe~~~~~lr~lf~~a~~----~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.||+.+||+.+-+ +...|.. +..|+.|.. ....+.+|.||+|||..|..+ +|
T Consensus 274 ~kPfV~~NCAAlPesLlESELFGHe-----KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQ 334 (550)
T COG3604 274 DKPFVKLNCAALPESLLESELFGHE-----KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQ 334 (550)
T ss_pred CCCceeeeccccchHHHHHHHhccc-----ccccccchhccCcceeecCCCeEechhhccCCHH--------------HH
Confidence 67999999998654 3333432 333443322 233578999999999999987 99
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccC
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFG 488 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~ 488 (570)
..||+++.+..+ ...+..+.+.+| +++|++||. |+++.+++++|...+.|-
T Consensus 335 aKLLRvLQegEi-------eRvG~~r~ikVD---VRiIAATNR-DL~~~V~~G~FRaDLYyR 385 (550)
T COG3604 335 AKLLRVLQEGEI-------ERVGGDRTIKVD---VRVIAATNR-DLEEMVRDGEFRADLYYR 385 (550)
T ss_pred HHHHHHHhhcce-------eecCCCceeEEE---EEEEeccch-hHHHHHHcCcchhhhhhc
Confidence 999999984322 223344455666 999999996 599999999998887773
No 110
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.28 E-value=2.1e-11 Score=135.34 Aligned_cols=201 Identities=18% Similarity=0.275 Sum_probs=115.0
Q ss_pred HHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHH
Q 008329 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (570)
Q Consensus 270 el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAra 349 (570)
.+.+.+...|.|++.+|+.|..++...... . .-++..+ ...-|+||+|+||||||++|++
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg~~~-------~------------~~~~~~~-r~~~~vLL~G~pGtGKs~lar~ 255 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGGVHK-------N------------LPDGMKI-RGDINILLLGDPGTAKSQLLKY 255 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCCCcc-------c------------cCCCccc-cccceEEEeCCCChhHHHHHHH
Confidence 455666778999999999887776411000 0 0001111 1224899999999999999999
Q ss_pred HHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHH
Q 008329 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (570)
Q Consensus 350 LA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~L 429 (570)
+++......+.. .......++.+..........+......+..+.+++++|||+|++.+. .|..|
T Consensus 256 l~~~~~r~~~~~-~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q~~L 320 (509)
T smart00350 256 VEKTAPRAVYTT-GKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DRTAI 320 (509)
T ss_pred HHHHcCcceEcC-CCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHH--------------HHHHH
Confidence 999875433221 110010111111000000000000011223457899999999999877 89999
Q ss_pred HHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHH
Q 008329 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (570)
Q Consensus 430 L~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~L 509 (570)
+++||...+++...|... .+ ..++.+|+++|+.. ++++.... +
T Consensus 321 ~e~me~~~i~i~k~G~~~-------~l-~~~~~viAa~NP~~-------g~y~~~~~----------------------~ 363 (509)
T smart00350 321 HEAMEQQTISIAKAGITT-------TL-NARCSVLAAANPIG-------GRYDPKLT----------------------P 363 (509)
T ss_pred HHHHhcCEEEEEeCCEEE-------Ee-cCCcEEEEEeCCCC-------cccCCCcC----------------------h
Confidence 999997777663333221 22 34578889888642 33322211 1
Q ss_pred HhhcChhhHHhcCCChhHhcccCeEEecC-CCCHHHHHHHhc
Q 008329 510 METVESSDLIAYGLIPEFVGRFPVLVSLL-ALTENQLVQKCH 550 (570)
Q Consensus 510 l~~l~~~dl~~~gl~Pefl~Rf~~iv~l~-~lseedL~~IL~ 550 (570)
.+ +..+.+.+++||+.++.+. ..+++.-.+|+.
T Consensus 364 ~~--------n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~ 397 (509)
T smart00350 364 EE--------NIDLPAPILSRFDLLFVVLDEVDEERDRELAK 397 (509)
T ss_pred hh--------ccCCChHHhCceeeEEEecCCCChHHHHHHHH
Confidence 11 1247899999998877764 455555445554
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.6e-11 Score=136.81 Aligned_cols=105 Identities=30% Similarity=0.425 Sum_probs=72.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 divGq~~v~~~L~~~i~~~~~-------------------------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRL-------------------------------HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCC-------------------------------CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999988851111 1456899999999999999999998663
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.++++. -.+ ...++++...+..........|++|||+|.|...
T Consensus 66 ~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~-----~~~---vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--- 134 (527)
T PRK14969 66 TGVTATPCGVCSACLEIDSGRFVDLIEVDAAS-----NTQ---VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--- 134 (527)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCceeEeeccc-----cCC---HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH---
Confidence 22222211 111 2334555544433223356679999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 135 -----------a~naLLK~LEe 145 (527)
T PRK14969 135 -----------AFNAMLKTLEE 145 (527)
T ss_pred -----------HHHHHHHHHhC
Confidence 78999999994
No 112
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.27 E-value=2.5e-11 Score=128.34 Aligned_cols=138 Identities=25% Similarity=0.395 Sum_probs=81.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+||+++|+.|...+... ..++++|.|++|+||||+++++++.+
T Consensus 5 ~ivgq~~~~~al~~~~~~~--------------------------------~~g~vli~G~~G~gKttl~r~~~~~~~~~ 52 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP--------------------------------KIGGVMVMGDRGTGKSTAVRALAALLPEI 52 (337)
T ss_pred ccccHHHHHHHHHHHhcCC--------------------------------CCCeEEEEcCCCCCHHHHHHHHHHhhccc
Confidence 3899999999887666310 12789999999999999999999887
Q ss_pred ----CCcEE-------------Ee--ec-------------cc----ccccccccch-hhHHHHH-HhhhcchhHhhhcC
Q 008329 355 ----NVPFV-------------IA--DA-------------TT----LTQAGYVGED-VESILYK-LLTVSDYNVAAAQQ 396 (570)
Q Consensus 355 ----g~~fv-------------~i--~~-------------s~----l~~~g~vGe~-~~~~lr~-lf~~a~~~v~~~~~ 396 (570)
++++- .. +. .+ ..+..++|.. +...+.. .+......+..+.+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~ 132 (337)
T TIGR02030 53 KAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR 132 (337)
T ss_pred ccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC
Confidence 33221 00 00 01 0111233431 1111110 01111223344677
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCC
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~ 469 (570)
++|||||++.+.+. +|+.|+++|+...+.+...|. .... ..++++|++.|.
T Consensus 133 GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~-------~~~~-~~r~iviat~np 183 (337)
T TIGR02030 133 GILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGI-------SIRH-PARFVLVGSGNP 183 (337)
T ss_pred CEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCE-------EEEc-CCCEEEEecccc
Confidence 99999999999876 999999999854433322221 1122 235677777654
No 113
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.7e-11 Score=128.37 Aligned_cols=134 Identities=25% Similarity=0.407 Sum_probs=98.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
+++|||||||||||+.|+-||+..|.++-.+.+.|+...| ......+.++|+.+.- ..++-+|||||+|++..+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG---~qaVTkiH~lFDWakk---S~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG---AQAVTKIHKLFDWAKK---SRRGLLLFIDEADAFLCE 458 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc---hHHHHHHHHHHHHHhh---cccceEEEehhhHHHHHH
Confidence 6999999999999999999999999999888888877543 3324556777776642 345668899999999999
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCc
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGA 489 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~ 489 (570)
|....++ |....+|..+|--+ -. ...+++++.++|.+. ++.++. .|+|..|+|++
T Consensus 459 RnktymS-----EaqRsaLNAlLfRT-----------Gd-------qSrdivLvlAtNrpgdlDsAV~-DRide~veFpL 514 (630)
T KOG0742|consen 459 RNKTYMS-----EAQRSALNALLFRT-----------GD-------QSRDIVLVLATNRPGDLDSAVN-DRIDEVVEFPL 514 (630)
T ss_pred hchhhhc-----HHHHHHHHHHHHHh-----------cc-------cccceEEEeccCCccchhHHHH-hhhhheeecCC
Confidence 8765444 44555666555410 00 134467777777776 666664 67999999999
Q ss_pred hhhhh
Q 008329 490 PVRAN 494 (570)
Q Consensus 490 p~~e~ 494 (570)
|-.+.
T Consensus 515 PGeEE 519 (630)
T KOG0742|consen 515 PGEEE 519 (630)
T ss_pred CChHH
Confidence 98765
No 114
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=2.3e-11 Score=137.86 Aligned_cols=105 Identities=31% Similarity=0.395 Sum_probs=73.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.++++
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-------------------------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-------------------------------LHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 48999999999999885110 12568999999999999999999998653
Q ss_pred E------------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 F------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 f------------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
- +++++++ -.| ...+++++.............||||||+|.+...
T Consensus 66 ~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs-----~~g---Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--- 134 (709)
T PRK08691 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS-----NTG---IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--- 134 (709)
T ss_pred CCCCCCCCcccHHHHHHhccCccceEEEeccc-----cCC---HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH---
Confidence 1 1222111 111 2345566554433323346689999999998765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.||+.||.
T Consensus 135 -----------A~NALLKtLEE 145 (709)
T PRK08691 135 -----------AFNAMLKTLEE 145 (709)
T ss_pred -----------HHHHHHHHHHh
Confidence 78999999994
No 115
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.26 E-value=1.1e-11 Score=135.60 Aligned_cols=152 Identities=21% Similarity=0.355 Sum_probs=112.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|.+.+...+.+.+. + .+.....||+.|++||||..+|++|.+..
T Consensus 246 ~Iig~S~~m~~~~~~ak----r--------------------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~ 295 (560)
T COG3829 246 DIIGESPAMLRVLELAK----R--------------------------IAKTDSTVLILGESGTGKELFARAIHNLSPRA 295 (560)
T ss_pred hhccCCHHHHHHHHHHH----h--------------------------hcCCCCcEEEecCCCccHHHHHHHHHhcCccc
Confidence 58999999888887763 1 11123689999999999999999998776
Q ss_pred CCcEEEeecccccc----cccccchhhHHHHHHhhhcc-----hhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 355 NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSD-----YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 355 g~~fv~i~~s~l~~----~g~vGe~~~~~lr~lf~~a~-----~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
+.||+.++|+.+-+ +.+.|.. ...|+.|. .....+.+|.||+|||..|... +
T Consensus 296 ~~PFIaiNCaAiPe~LlESELFGye-----~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~--------------L 356 (560)
T COG3829 296 NGPFIAINCAAIPETLLESELFGYE-----KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP--------------L 356 (560)
T ss_pred CCCeEEEecccCCHHHHHHHHhCcC-----CccccccccCCCCcceeeccCCeEEehhhccCCHH--------------H
Confidence 78999999998653 3333432 22333332 2334578899999999999987 9
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCc
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~ 489 (570)
|..||++|++..+ ...+....+.+| +++|+|||.. +++++..++|...+.|-.
T Consensus 357 QaKLLRVLQEkei-------~rvG~t~~~~vD---VRIIAATN~n-L~~~i~~G~FReDLYYRL 409 (560)
T COG3829 357 QAKLLRVLQEKEI-------ERVGGTKPIPVD---VRIIAATNRN-LEKMIAEGTFREDLYYRL 409 (560)
T ss_pred HHHHHHHHhhceE-------EecCCCCceeeE---EEEEeccCcC-HHHHHhcCcchhhheeee
Confidence 9999999985432 222333334454 9999999975 999999999999988853
No 116
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.26 E-value=8.1e-12 Score=136.11 Aligned_cols=154 Identities=19% Similarity=0.366 Sum_probs=111.1
Q ss_pred hcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh-
Q 008329 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (570)
Q Consensus 276 ~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l- 354 (570)
...++|++.+.+.|.+.+.. +.-...+||++|++||||..+|++|.+..
T Consensus 140 ~~~liG~S~am~~l~~~i~k------------------------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAK------------------------------VAPSDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cCCceecCHHHHHHHHHHHH------------------------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 34689999999999888851 11123689999999999999999998776
Q ss_pred --CCcEEEeecccccc----cccccchhhHHHHHHhhhcc----hhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHH
Q 008329 355 --NVPFVIADATTLTQ----AGYVGEDVESILYKLLTVSD----YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEG 424 (570)
Q Consensus 355 --g~~fv~i~~s~l~~----~g~vGe~~~~~lr~lf~~a~----~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~ 424 (570)
+.||+.++|..+.+ +.+.|.. ...|+.+. .....+.+|+||||||..|...
T Consensus 190 R~~~PFVavNcaAip~~l~ESELFGhe-----kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~-------------- 250 (464)
T COG2204 190 RAKGPFIAVNCAAIPENLLESELFGHE-----KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE-------------- 250 (464)
T ss_pred ccCCCceeeecccCCHHHHHHHhhccc-----ccCcCCcccccCcceeEcCCceEEeeccccCCHH--------------
Confidence 56999999998764 2222321 11222221 1233468899999999999877
Q ss_pred HHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCc
Q 008329 425 VQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGA 489 (570)
Q Consensus 425 vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~ 489 (570)
+|..||++|+...+ .+.+....+.+ +++||++|+. ++++.+..++|...+.|-+
T Consensus 251 ~Q~kLLRvLqe~~~-------~rvG~~~~i~v---dvRiIaaT~~-dL~~~v~~G~FReDLyyRL 304 (464)
T COG2204 251 LQVKLLRVLQEREF-------ERVGGNKPIKV---DVRIIAATNR-DLEEEVAAGRFREDLYYRL 304 (464)
T ss_pred HHHHHHHHHHcCee-------EecCCCcccce---eeEEEeecCc-CHHHHHHcCCcHHHHHhhh
Confidence 99999999985432 12222233344 4999999986 5999999999988887754
No 117
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=5.5e-11 Score=131.86 Aligned_cols=105 Identities=30% Similarity=0.302 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... .++.+||+|||||||||+|+++|+.+.+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-------------------------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-------------------------------LGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 38999999999998885110 11345899999999999999999988541
Q ss_pred -----------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhc
Q 008329 358 -----------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (570)
Q Consensus 358 -----------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~ 414 (570)
++.+++++ ..+ ...++++..............||+|||+|.+...
T Consensus 64 ~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~---- 131 (504)
T PRK14963 64 GEDPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS---- 131 (504)
T ss_pred CCCCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH----
Confidence 33333321 111 1234444332222122346679999999988654
Q ss_pred ccCCCCchHHHHHHHHHHHcC
Q 008329 415 NISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 415 ~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.|+.
T Consensus 132 ----------a~naLLk~LEe 142 (504)
T PRK14963 132 ----------AFNALLKTLEE 142 (504)
T ss_pred ----------HHHHHHHHHHh
Confidence 78999999983
No 118
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.3e-11 Score=136.81 Aligned_cols=185 Identities=21% Similarity=0.230 Sum_probs=134.8
Q ss_pred HHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHH
Q 008329 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (570)
Q Consensus 269 ~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAr 348 (570)
..-...+|. |+|.++.++.+.+.+.+..+ .+-+|+|+||+|||.++.
T Consensus 163 ~Ar~gklDP-vIGRd~EI~r~iqIL~RR~K--------------------------------NNPvLiGEpGVGKTAIvE 209 (786)
T COG0542 163 LAREGKLDP-VIGRDEEIRRTIQILSRRTK--------------------------------NNPVLVGEPGVGKTAIVE 209 (786)
T ss_pred HHhcCCCCC-CcChHHHHHHHHHHHhccCC--------------------------------CCCeEecCCCCCHHHHHH
Confidence 333445555 89999999999988863222 578999999999999999
Q ss_pred HHHHHh----------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 349 TLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 349 aLA~~l----------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
.+|..+ +..++.++...+.. .+|.|+ ++..+..++.+.. ...+.|||||||+.+.......+
T Consensus 210 GLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe-FEeRlk~vl~ev~----~~~~vILFIDEiHtiVGAG~~~G-- 282 (786)
T COG0542 210 GLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE-FEERLKAVLKEVE----KSKNVILFIDEIHTIVGAGATEG-- 282 (786)
T ss_pred HHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc-HHHHHHHHHHHHh----cCCCeEEEEechhhhcCCCcccc--
Confidence 999766 45678888877654 668887 4888888776643 23478999999999987632211
Q ss_pred CCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhc
Q 008329 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~ 497 (570)
+ .-.+.|.|..+|. ...+.+|.+|+..+.
T Consensus 283 -~--a~DAaNiLKPaLA-----------------------RGeL~~IGATT~~EY------------------------- 311 (786)
T COG0542 283 -G--AMDAANLLKPALA-----------------------RGELRCIGATTLDEY------------------------- 311 (786)
T ss_pred -c--ccchhhhhHHHHh-----------------------cCCeEEEEeccHHHH-------------------------
Confidence 1 1226787777776 222567787775432
Q ss_pred CCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh-hccccccccCCcccc
Q 008329 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR-FYKLPMSLSNLTGTD 568 (570)
Q Consensus 498 ~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~-~y~~~~~~~~v~~~~ 568 (570)
++..+ .++.|-+||. .|.+.+++.++-..||...+ .|+ .+|+|+.+|
T Consensus 312 ------------Rk~iE--------KD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE---~hH~V~i~D 359 (786)
T COG0542 312 ------------RKYIE--------KDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYE---AHHGVRITD 359 (786)
T ss_pred ------------HHHhh--------hchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHH---HccCceecH
Confidence 22222 3488888994 56789999999999999988 888 788998876
No 119
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.1e-11 Score=132.06 Aligned_cols=182 Identities=24% Similarity=0.384 Sum_probs=111.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
+|+||+.||+.|..+.. ..+++||+||||||||++|+.+...+-
T Consensus 180 DV~GQ~~AKrAleiAAA----------------------------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpl 225 (490)
T COG0606 180 DVKGQEQAKRALEIAAA----------------------------------GGHNLLLVGPPGTGKTMLASRLPGLLPPL 225 (490)
T ss_pred hhcCcHHHHHHHHHHHh----------------------------------cCCcEEEecCCCCchHHhhhhhcccCCCC
Confidence 59999999999998774 237999999999999999999986651
Q ss_pred --CcEEEeecccccccccccchhh----------------HHHHHHhh----hcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 356 --VPFVIADATTLTQAGYVGEDVE----------------SILYKLLT----VSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 356 --~~fv~i~~s~l~~~g~vGe~~~----------------~~lr~lf~----~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
...++++ .+ ..+.|.... .....+.. -.+..+..+.+|||||||+-.+..+
T Consensus 226 s~~E~lE~s--~I--~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~--- 298 (490)
T COG0606 226 SIPEALEVS--AI--HSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS--- 298 (490)
T ss_pred ChHHHHHHH--HH--hhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH---
Confidence 0001000 00 001111000 00001111 1122445678999999998777654
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhh
Q 008329 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e 493 (570)
+.+.|.+.||+..+.| ...+..+++ ..++.+|+++|.. ....++.+.+.
T Consensus 299 -----------iLe~LR~PLE~g~i~I-------sRa~~~v~y-pa~Fqlv~AmNpc------------pcG~~~~~~~~ 347 (490)
T COG0606 299 -----------ILEALREPLENGKIII-------SRAGSKVTY-PARFQLVAAMNPC------------PCGNLGAPLRR 347 (490)
T ss_pred -----------HHHHHhCccccCcEEE-------EEcCCeeEE-eeeeEEhhhcCCC------------CccCCCCCCCC
Confidence 9999999999776666 222233344 4558888888863 23334444433
Q ss_pred hhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHH
Q 008329 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (570)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~ 546 (570)
+ .+........+.. +.-.|++||+..+....++..++.
T Consensus 348 C-----~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~~ 385 (490)
T COG0606 348 C-----PCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGELI 385 (490)
T ss_pred c-----CCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHhh
Confidence 3 1222222223322 567899999999999998866554
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=7e-11 Score=134.84 Aligned_cols=110 Identities=26% Similarity=0.332 Sum_probs=73.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+.+.
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-------------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-------------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 48999999999999885110 12567899999999999999999998653
Q ss_pred EEEe---ecc----------cccc---cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCc
Q 008329 358 FVIA---DAT----------TLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVS 421 (570)
Q Consensus 358 fv~i---~~s----------~l~~---~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~ 421 (570)
-... .|. ++.. .+-.| ...++++..............|++|||+|.|...
T Consensus 68 ~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~---vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~----------- 133 (725)
T PRK07133 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNG---VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS----------- 133 (725)
T ss_pred ccCCCCCchhHHHHhhcCCCcEEEEeccccCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------
Confidence 2100 000 0000 00111 2235555554443333456789999999999865
Q ss_pred hHHHHHHHHHHHcC
Q 008329 422 GEGVQQALLKMLEG 435 (570)
Q Consensus 422 ~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 134 ---A~NALLKtLEE 144 (725)
T PRK07133 134 ---AFNALLKTLEE 144 (725)
T ss_pred ---HHHHHHHHhhc
Confidence 89999999994
No 121
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=4.1e-11 Score=134.86 Aligned_cols=105 Identities=29% Similarity=0.339 Sum_probs=73.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... -++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR-------------------------------VAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 48999999999998885110 12457899999999999999999998653
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++++++.+ -.| .+.++++.....+........|++|||+|.|...
T Consensus 66 ~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s-----~~~---v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--- 134 (576)
T PRK14965 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS-----NTG---VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--- 134 (576)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeeeeeccC-----ccC---HHHHHHHHHHHHhccccCCceEEEEEChhhCCHH---
Confidence 23333221 111 1234455444333223356679999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 135 -----------a~naLLk~LEe 145 (576)
T PRK14965 135 -----------AFNALLKTLEE 145 (576)
T ss_pred -----------HHHHHHHHHHc
Confidence 89999999994
No 122
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=7.5e-11 Score=132.35 Aligned_cols=105 Identities=32% Similarity=0.382 Sum_probs=73.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... .++.+||+||+|||||++|+.+|+.+++.
T Consensus 17 ~viGq~~v~~~L~~~i~~~~-------------------------------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK-------------------------------ISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48999999999998885110 12457899999999999999999998642
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++++ -.| .+.++++..............|++|||+|.|...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-----~~~---vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--- 134 (559)
T PRK05563 66 NPPDGEPCNECEICKAITNGSLMDVIEIDAAS-----NNG---VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--- 134 (559)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-----cCC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 23333321 111 2334555544443333456789999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 135 -----------a~naLLKtLEe 145 (559)
T PRK05563 135 -----------AFNALLKTLEE 145 (559)
T ss_pred -----------HHHHHHHHhcC
Confidence 79999999994
No 123
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.23 E-value=7e-11 Score=134.38 Aligned_cols=137 Identities=26% Similarity=0.336 Sum_probs=87.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+||+.+|+.|..++.+. ..++|||.|++|||||++|++|++.+
T Consensus 5 ~ivGq~~~~~al~~~av~~--------------------------------~~g~vli~G~~GtgKs~lar~l~~~lp~~ 52 (633)
T TIGR02442 5 AIVGQEDLKLALLLNAVDP--------------------------------RIGGVLIRGEKGTAKSTAARGLAALLPPI 52 (633)
T ss_pred hhcChHHHHHHHHHHhhCC--------------------------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCc
Confidence 4899999999887666311 11689999999999999999999988
Q ss_pred --------------------------------CCcEEEeecccccccccccc-hhhHHHHHH-hhhcchhHhhhcCeEEE
Q 008329 355 --------------------------------NVPFVIADATTLTQAGYVGE-DVESILYKL-LTVSDYNVAAAQQGIVY 400 (570)
Q Consensus 355 --------------------------------g~~fv~i~~s~l~~~g~vGe-~~~~~lr~l-f~~a~~~v~~~~~gILf 400 (570)
..||+.+.+.... ..++|. ++...+..- .......+..+.++|||
T Consensus 53 ~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~ 131 (633)
T TIGR02442 53 DVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILY 131 (633)
T ss_pred eeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEE
Confidence 2456655443322 234443 222211100 01112223346789999
Q ss_pred EcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCC
Q 008329 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (570)
Q Consensus 401 IDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~ 469 (570)
||||+.+.+. +|+.|++.|+...+.+...| ..... ..++++|++.|.
T Consensus 132 lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g-------~~~~~-~~~~~lIat~np 178 (633)
T TIGR02442 132 IDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREG-------LSVSH-PARFVLIGTMNP 178 (633)
T ss_pred eChhhhCCHH--------------HHHHHHHHHhcCCEEEEECC-------ceeee-cCCeEEEEecCC
Confidence 9999999987 99999999985544332122 11122 356788888775
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=8.2e-11 Score=132.00 Aligned_cols=105 Identities=31% Similarity=0.415 Sum_probs=71.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+++|+.+.+
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-------------------------------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-------------------------------LTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48999999999988874110 1256889999999999999999999854
Q ss_pred -----------------------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 357 -----------------------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 357 -----------------------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
.++.+++++ ..|- ..++++..............|++|||+|.|...
T Consensus 66 ~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas-----~igV---d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--- 134 (605)
T PRK05896 66 NPKDGDCCNSCSVCESINTNQSVDIVELDAAS-----NNGV---DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--- 134 (605)
T ss_pred CCCCCCCCcccHHHHHHHcCCCCceEEecccc-----ccCH---HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH---
Confidence 123333221 1121 234444443332223345679999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||.
T Consensus 135 -----------A~NaLLKtLEE 145 (605)
T PRK05896 135 -----------AWNALLKTLEE 145 (605)
T ss_pred -----------HHHHHHHHHHh
Confidence 78999999994
No 125
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=6.6e-11 Score=127.49 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=70.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.+... ++.+||+||+|+|||++|+++|+.+.+.
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~-------------------------------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRV-------------------------------GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hccChHHHHHHHHHHHHhCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 389999999999888852111 2458899999999999999999999763
Q ss_pred EEE----------eecc--------------cccccccccch-h-hHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhh
Q 008329 358 FVI----------ADAT--------------TLTQAGYVGED-V-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 358 fv~----------i~~s--------------~l~~~g~vGe~-~-~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r 411 (570)
-.. -.|. ++.. +-|.+ . .+.++++..........+...|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~--~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~- 142 (397)
T PRK14955 66 RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISE--FDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA- 142 (397)
T ss_pred CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEe--ecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-
Confidence 100 0000 0000 11110 0 1234444333322222346679999999999865
Q ss_pred hhcccCCCCchHHHHHHHHHHHcC
Q 008329 412 ESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 412 ~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.||.
T Consensus 143 -------------~~~~LLk~LEe 153 (397)
T PRK14955 143 -------------AFNAFLKTLEE 153 (397)
T ss_pred -------------HHHHHHHHHhc
Confidence 68899999984
No 126
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.21 E-value=9.3e-11 Score=129.84 Aligned_cols=184 Identities=21% Similarity=0.302 Sum_probs=107.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|+||+.+++.+..++. ...+++|+||||||||++|+.++..+...
T Consensus 193 dv~Gq~~~~~al~~aa~----------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~ 238 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAA----------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPL 238 (499)
T ss_pred HhcCcHHHHhhhhhhcc----------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence 48999999988776652 12678999999999999999999765110
Q ss_pred --EEEeecccccccccccchh------hHHH---------HHHhhh----cchhHhhhcCeEEEEcchhhhhhhhhhccc
Q 008329 358 --FVIADATTLTQAGYVGEDV------ESIL---------YKLLTV----SDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (570)
Q Consensus 358 --fv~i~~s~l~~~g~vGe~~------~~~l---------r~lf~~----a~~~v~~~~~gILfIDEID~L~~~r~~~~~ 416 (570)
-..+..+.+.. +.|... ...+ ..++.. ....+..+.++||||||++.+.+.
T Consensus 239 ~~~~~le~~~i~s--~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~------ 310 (499)
T TIGR00368 239 TNEEAIETARIWS--LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS------ 310 (499)
T ss_pred CCcEEEecccccc--chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH------
Confidence 01111111110 000000 0000 000100 112344567899999999999876
Q ss_pred CCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhh
Q 008329 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (570)
Q Consensus 417 ~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~ 496 (570)
+++.|++.||...+.|...+. ... ...++.+|+++|.-. -++ |+.+...+
T Consensus 311 --------~~~~L~~~LE~~~v~i~r~g~-------~~~-~pa~frlIaa~Npcp------cg~------~~~~~~~c-- 360 (499)
T TIGR00368 311 --------VLDALREPIEDGSISISRASA-------KIF-YPARFQLVAAMNPCP------CGH------YGGKNTHC-- 360 (499)
T ss_pred --------HHHHHHHHHHcCcEEEEecCc-------cee-ccCCeEEEEecCCcc------cCc------CCCCcccc--
Confidence 999999999977665533221 112 245788899888631 111 12211111
Q ss_pred cCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHH
Q 008329 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (570)
Q Consensus 497 ~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~ 546 (570)
.+.. .++..++.. +...+++||+..+.+++++.++|.
T Consensus 361 ---~c~~---~~~~~y~~~-------is~pllDR~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 361 ---RCSP---QQISRYWNK-------LSGPFLDRIDLSVEVPLLPPEKLL 397 (499)
T ss_pred ---cCCH---HHHHHHhhh-------ccHhHHhhCCEEEEEcCCCHHHHh
Confidence 1112 122222222 778999999999999998877763
No 127
>PRK04195 replication factor C large subunit; Provisional
Probab=99.21 E-value=1.3e-10 Score=128.20 Aligned_cols=110 Identities=27% Similarity=0.408 Sum_probs=76.2
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
|+|++++++.|..++..+..+ .+..++||+||||||||++|+++|+.++.++
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g----------------------------~~~~~lLL~GppG~GKTtla~ala~el~~~~ 67 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKG----------------------------KPKKALLLYGPPGVGKTSLAHALANDYGWEV 67 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 899999999999988532210 0136899999999999999999999999999
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcch--hHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~--~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+.+++++.... ..+......+.. .+....+.||+|||+|.+.... ..+.+++|++.++
T Consensus 68 ielnasd~r~~--------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~ 127 (482)
T PRK04195 68 IELNASDQRTA--------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK 127 (482)
T ss_pred EEEcccccccH--------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH
Confidence 99998775421 112222211110 0111256799999999987521 1125778888887
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=1.4e-10 Score=131.58 Aligned_cols=105 Identities=28% Similarity=0.351 Sum_probs=74.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... -.+++||+||+|+|||++|+++|+.+++.
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-------------------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-------------------------------IAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 38999999999998885211 12578999999999999999999998763
Q ss_pred E--------------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhh
Q 008329 358 F--------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 358 f--------------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r 411 (570)
. +.++.. .... .+.+++++..+..........|++|||+|.|...
T Consensus 66 ~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~-------~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~- 136 (620)
T PRK14948 66 NSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA-------SNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA- 136 (620)
T ss_pred CcCCCCCCCCcccHHHHHHhcCCCccEEEEecc-------ccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH-
Confidence 1 112111 0111 2355666655443323345679999999999765
Q ss_pred hhcccCCCCchHHHHHHHHHHHcC
Q 008329 412 ESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 412 ~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 137 -------------a~naLLK~LEe 147 (620)
T PRK14948 137 -------------AFNALLKTLEE 147 (620)
T ss_pred -------------HHHHHHHHHhc
Confidence 89999999994
No 129
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.19 E-value=1.5e-10 Score=121.39 Aligned_cols=105 Identities=31% Similarity=0.403 Sum_probs=70.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... .++.+||+||||+|||++|+++++.+.++
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-------------------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-------------------------------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47999999999998884110 12467899999999999999999988543
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++.+ .. . ...+++++..+..........||+|||+|.+...
T Consensus 64 ~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~-----~~--~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--- 132 (355)
T TIGR02397 64 NGPDGEPCNECESCKEINSGSSLDVIEIDAAS-----NN--G-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--- 132 (355)
T ss_pred CCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc-----cC--C-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---
Confidence 22222211 00 1 1234445444332222345679999999999754
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.+|+
T Consensus 133 -----------~~~~Ll~~le~ 143 (355)
T TIGR02397 133 -----------AFNALLKTLEE 143 (355)
T ss_pred -----------HHHHHHHHHhC
Confidence 78899999984
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=2.3e-10 Score=125.36 Aligned_cols=105 Identities=28% Similarity=0.340 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+.+.
T Consensus 18 diiGq~~~v~~L~~~i~~~~-------------------------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR-------------------------------AAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 38999999999988884110 12568899999999999999999988542
Q ss_pred -------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhh
Q 008329 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 358 -------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~ 412 (570)
++.+++.+ ..|- ..++++..............|++|||+|.+...
T Consensus 67 ~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~-----~~gi---d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-- 136 (451)
T PRK06305 67 NPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS-----HRGI---EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-- 136 (451)
T ss_pred CcccCCCCCcccHHHHHHhcCCCCceEEeeccc-----cCCH---HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--
Confidence 22222211 1111 223333222222222356789999999999865
Q ss_pred hcccCCCCchHHHHHHHHHHHcC
Q 008329 413 SLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.||.
T Consensus 137 ------------~~n~LLk~lEe 147 (451)
T PRK06305 137 ------------AFNSLLKTLEE 147 (451)
T ss_pred ------------HHHHHHHHhhc
Confidence 78999999994
No 131
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=1.9e-10 Score=129.90 Aligned_cols=110 Identities=29% Similarity=0.325 Sum_probs=74.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... .+..+||+||+|+|||++|+++|+.+++.
T Consensus 25 dliGq~~~v~~L~~~~~~gr-------------------------------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR-------------------------------IAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 48999999999998884111 12579999999999999999999998654
Q ss_pred EEEee-------c--------------ccccc---cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 FVIAD-------A--------------TTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 fv~i~-------~--------------s~l~~---~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
....+ | .++.+ .+..| ...+++++.........+...|++|||+|.+...
T Consensus 74 ~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--- 147 (598)
T PRK09111 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--- 147 (598)
T ss_pred CccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH---
Confidence 21111 0 01110 11122 2335555554443333456789999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 148 -----------a~naLLKtLEe 158 (598)
T PRK09111 148 -----------AFNALLKTLEE 158 (598)
T ss_pred -----------HHHHHHHHHHh
Confidence 78999999994
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.17 E-value=2.2e-10 Score=118.59 Aligned_cols=141 Identities=21% Similarity=0.293 Sum_probs=87.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.+...+.... .+..+||+||||+|||++|+++++.++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-------------------------------~~~~lll~G~~G~GKT~la~~l~~~~~~~ 70 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-------------------------------IPNMLLHSPSPGTGKTTVAKALCNEVGAE 70 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-------------------------------CCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence 37999999999988874100 11345569999999999999999999888
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.+++++ .. +.. +...+.+...... ....+.||+|||+|.+... ..++.|...|+..
T Consensus 71 ~~~i~~~~-~~---~~~-i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le~~- 128 (316)
T PHA02544 71 VLFVNGSD-CR---IDF-VRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DAQRHLRSFMEAY- 128 (316)
T ss_pred ceEeccCc-cc---HHH-HHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HHHHHHHHHHHhc-
Confidence 88888866 21 110 1111211111111 1135689999999998322 1567788888831
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e 493 (570)
..++.+|++++..+ +.+.++. |+ ..+.|+.|+.+
T Consensus 129 --------------------~~~~~~Ilt~n~~~~l~~~l~s-R~-~~i~~~~p~~~ 163 (316)
T PHA02544 129 --------------------SKNCSFIITANNKNGIIEPLRS-RC-RVIDFGVPTKE 163 (316)
T ss_pred --------------------CCCceEEEEcCChhhchHHHHh-hc-eEEEeCCCCHH
Confidence 23356666666544 4444443 33 25666666543
No 133
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.17 E-value=1.4e-10 Score=122.13 Aligned_cols=150 Identities=21% Similarity=0.293 Sum_probs=95.6
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---C
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g 355 (570)
++|++.+.+.+.+.+...- ....+|||+|++||||+++|++|.... +
T Consensus 1 liG~S~~m~~~~~~~~~~a------------------------------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~ 50 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA------------------------------PLDRPVLIIGERGTGKELIAARLHYLSKRWQ 50 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCChHHHHHHHHHHhcCccC
Confidence 4788888888887774111 123689999999999999999998765 4
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhc----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHH
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~ 431 (570)
.||+.++|+.+.+. .....+-......|..+ ......+.+++||||||+.|... +|..|+.
T Consensus 51 ~pfv~vnc~~~~~~-~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~ 115 (329)
T TIGR02974 51 GPLVKLNCAALSEN-LLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLL--------------VQEKLLR 115 (329)
T ss_pred CCeEEEeCCCCChH-HHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHH--------------HHHHHHH
Confidence 79999999876531 11000000000111111 11233467899999999999987 9999999
Q ss_pred HHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccc
Q 008329 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSS 484 (570)
Q Consensus 432 ~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~ 484 (570)
+|+...+. ..+.. .....++++|++++. ++++.+..+.|...
T Consensus 116 ~l~~~~~~---------~~g~~-~~~~~~~RiI~at~~-~l~~~~~~g~fr~d 157 (329)
T TIGR02974 116 VIEYGEFE---------RVGGS-QTLQVDVRLVCATNA-DLPALAAEGRFRAD 157 (329)
T ss_pred HHHcCcEE---------ecCCC-ceeccceEEEEechh-hHHHHhhcCchHHH
Confidence 99843221 01111 112446889988875 46666776666443
No 134
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=2.8e-10 Score=126.65 Aligned_cols=105 Identities=36% Similarity=0.420 Sum_probs=71.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+.++
T Consensus 15 eiiGqe~v~~~L~~~I~~gr-------------------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR-------------------------------LAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 38999999999998884110 11456899999999999999999987431
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++++ ..| .+.+++...........+...|++|||+|.|...
T Consensus 64 ~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~--- 132 (535)
T PRK08451 64 QGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE--- 132 (535)
T ss_pred CCCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH---
Confidence 22222211 011 1334554433222222245679999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||.
T Consensus 133 -----------A~NALLK~LEE 143 (535)
T PRK08451 133 -----------AFNALLKTLEE 143 (535)
T ss_pred -----------HHHHHHHHHhh
Confidence 89999999994
No 135
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.14 E-value=4e-10 Score=116.94 Aligned_cols=111 Identities=27% Similarity=0.387 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
.++|++++++.|..++... ..++++|+||||||||++|+++++.+.
T Consensus 16 ~~~g~~~~~~~L~~~~~~~--------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSP--------------------------------NLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred HhcCCHHHHHHHHHHHhCC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3789999999998877410 014799999999999999999999874
Q ss_pred ---CcEEEeeccccccc--ccccch----------------hhHHHHHHhhhcc-hhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 356 ---VPFVIADATTLTQA--GYVGED----------------VESILYKLLTVSD-YNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 356 ---~~fv~i~~s~l~~~--g~vGe~----------------~~~~lr~lf~~a~-~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
.+++.+++.++... ..+.++ ....+++...... .........+|+|||+|.+...
T Consensus 64 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~--- 140 (337)
T PRK12402 64 PWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED--- 140 (337)
T ss_pred ccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH---
Confidence 34667777654210 011100 0111222211110 0001134569999999998754
Q ss_pred cccCCCCchHHHHHHHHHHHc
Q 008329 414 LNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LE 434 (570)
.++.|++.|+
T Consensus 141 -----------~~~~L~~~le 150 (337)
T PRK12402 141 -----------AQQALRRIME 150 (337)
T ss_pred -----------HHHHHHHHHH
Confidence 6778999988
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=3.2e-10 Score=127.27 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=71.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.+.. -++.+||+||+|+|||++|+++|+.+++.
T Consensus 17 diiGqe~iv~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-------------------------------IANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 48999999999998885211 12468899999999999999999998653
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++.+ -.+ .+.++++..............|++|||+|.+...
T Consensus 66 ~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas-----~~~---vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--- 134 (563)
T PRK06647 66 NGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS-----NTS---VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--- 134 (563)
T ss_pred cCCCCCCCccchHHHHHHcCCCCCeEEecCcc-----cCC---HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH---
Confidence 22222211 001 1234444433322223356779999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||.
T Consensus 135 -----------a~naLLK~LEe 145 (563)
T PRK06647 135 -----------AFNALLKTIEE 145 (563)
T ss_pred -----------HHHHHHHhhcc
Confidence 79999999993
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=3.2e-10 Score=125.34 Aligned_cols=105 Identities=32% Similarity=0.407 Sum_probs=70.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... .++.+||+||+|+|||++|+.+|+.+++.
T Consensus 17 diiGq~~i~~~L~~~i~~~~-------------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-------------------------------VSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 48999999999998885110 11456799999999999999999998641
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++++ -.|. ..++.+..........+...|++|||+|.+...
T Consensus 66 ~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas-----~~gv---d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--- 134 (486)
T PRK14953 66 NPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS-----NRGI---DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--- 134 (486)
T ss_pred CCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc-----CCCH---HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH---
Confidence 12222211 1121 223343333332222356789999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++|++.|+.
T Consensus 135 -----------a~naLLk~LEe 145 (486)
T PRK14953 135 -----------AFNALLKTLEE 145 (486)
T ss_pred -----------HHHHHHHHHhc
Confidence 78999999984
No 138
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.13 E-value=3.3e-10 Score=131.34 Aligned_cols=204 Identities=15% Similarity=0.171 Sum_probs=114.9
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHH
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraL 350 (570)
+...+...|.|.+.+|+.|.-++.... .+....+ ..++. ......-....||||+|+||||||.+|+++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~gG~-------~k~~~~~--~~~dg--~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFSGN-------KNSSDFN--KSPDA--CYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhcCC-------ccccccc--ccccc--ccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 444555679999999998876664111 0000000 00000 000000112359999999999999999999
Q ss_pred HHHhCC-------cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 351 ARYVNV-------PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 351 A~~lg~-------~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
++...+ ++..+.++.... +.... ...+......+..+.+|+++|||++++.+.
T Consensus 513 h~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------- 572 (915)
T PTZ00111 513 HLLSPRSIYTSGKSSSSVGLTASIK--FNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------- 572 (915)
T ss_pred HHhCCccccCCCCCCccccccchhh--hcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH-------------
Confidence 987643 222222222110 00000 000000011223467899999999999877
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChH
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~ 503 (570)
.|.+|+++||...++|...|... .+ ..++.+|+++|+. .++++....+ .+
T Consensus 573 -~Q~aLlEaMEqqtIsI~KaGi~~-------tL-~ar~rVIAAaNP~-------~gryd~~~s~----~e---------- 622 (915)
T PTZ00111 573 -SRLSLYEVMEQQTVTIAKAGIVA-------TL-KAETAILASCNPI-------NSRYNKNKAV----IE---------- 622 (915)
T ss_pred -HHHHHHHHHhCCEEEEecCCcce-------ec-CCCeEEEEEcCCc-------ccccCcccCc----cc----------
Confidence 89999999998777663333222 22 3468899999874 2444332111 01
Q ss_pred HHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 504 ~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
+..+.+.+++||+.+..+.+...++..+.|++
T Consensus 623 ----------------ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~ 654 (915)
T PTZ00111 623 ----------------NINISPSLFTRFDLIYLVLDHIDQDTDQLISL 654 (915)
T ss_pred ----------------ccCCChHHhhhhcEEEEecCCCChHHHHHHHH
Confidence 22488999999999887766555555555443
No 139
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=4.9e-10 Score=126.90 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=71.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.+.. -++.+||+||+||||||+|+++|+.+++.
T Consensus 17 eivGQe~i~~~L~~~i~~~r-------------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR-------------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999988874111 12468899999999999999999999763
Q ss_pred EEE----------eeccc------ccc---cc---cccch-h-hHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 FVI----------ADATT------LTQ---AG---YVGED-V-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 fv~----------i~~s~------l~~---~g---~vGe~-~-~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
-.. -.|.. +.. .. +-|.+ . .+.++++..........+...|++|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--- 142 (620)
T PRK14954 66 RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--- 142 (620)
T ss_pred CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH---
Confidence 100 00000 000 00 11111 0 2334444433322223356679999999999865
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++||+.||.
T Consensus 143 -----------a~naLLK~LEe 153 (620)
T PRK14954 143 -----------AFNAFLKTLEE 153 (620)
T ss_pred -----------HHHHHHHHHhC
Confidence 78999999994
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.12 E-value=5.7e-10 Score=126.60 Aligned_cols=117 Identities=33% Similarity=0.431 Sum_probs=76.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++||+.+++.+...+... .+.+++|+|||||||||+|+++++..
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--------------------------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--------------------------------FPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3799999999876555311 12579999999999999999998765
Q ss_pred -------CCcEEEeecccccc------cccccchhhH---HHHHHhhh------cchhHhhhcCeEEEEcchhhhhhhhh
Q 008329 355 -------NVPFVIADATTLTQ------AGYVGEDVES---ILYKLLTV------SDYNVAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~------~g~vGe~~~~---~lr~lf~~------a~~~v~~~~~gILfIDEID~L~~~r~ 412 (570)
+.+|+.++++.+.. ..+.|..... ...+.+.. ....+....+++|||||++.|.+.
T Consensus 203 ~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-- 280 (615)
T TIGR02903 203 KHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-- 280 (615)
T ss_pred cCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--
Confidence 35789999876521 0112211000 00111110 011223456789999999999877
Q ss_pred hcccCCCCchHHHHHHHHHHHcCCeeee
Q 008329 413 SLNISRDVSGEGVQQALLKMLEGTVVNV 440 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg~~v~i 440 (570)
.|+.|++.|+...+.+
T Consensus 281 ------------~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 281 ------------LQNKLLKVLEDKRVEF 296 (615)
T ss_pred ------------HHHHHHHHHhhCeEEe
Confidence 8999999998665544
No 141
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.6e-10 Score=127.56 Aligned_cols=137 Identities=28% Similarity=0.348 Sum_probs=95.0
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
++|+||+.+++.|..++.+... .+.+||.||-|||||++||.+|+.+++
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-------------------------------~hAYlfsG~RGvGKTt~Ari~AkalNC 64 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-------------------------------AHAYLFSGPRGVGKTTIARILAKALNC 64 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-------------------------------hhhhhhcCCCCcCchhHHHHHHHHhcC
Confidence 3489999999999999962222 267899999999999999999999976
Q ss_pred cE--E-----------Eeec---ccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCC
Q 008329 357 PF--V-----------IADA---TTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (570)
Q Consensus 357 ~f--v-----------~i~~---s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~ 420 (570)
.- . .++. .|+.+.+-....-.+.+|++.+...+.....+..|++|||++.+...
T Consensus 65 ~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~---------- 134 (515)
T COG2812 65 ENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ---------- 134 (515)
T ss_pred CCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH----------
Confidence 42 0 0110 11111110000012346677776666666678889999999999876
Q ss_pred chHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhc
Q 008329 421 SGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISER 479 (570)
Q Consensus 421 ~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~R 479 (570)
..|+||+.+|+ ...+++||++|+... +...+..|
T Consensus 135 ----afNALLKTLEE---------------------PP~hV~FIlATTe~~Kip~TIlSR 169 (515)
T COG2812 135 ----AFNALLKTLEE---------------------PPSHVKFILATTEPQKIPNTILSR 169 (515)
T ss_pred ----HHHHHhccccc---------------------CccCeEEEEecCCcCcCchhhhhc
Confidence 89999999995 366788988887665 44444433
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=5e-10 Score=126.39 Aligned_cols=105 Identities=30% Similarity=0.362 Sum_probs=69.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... .+.+||+||+|+|||++|+++|+.+++.
T Consensus 17 eiiGq~~~~~~L~~~i~~~~i-------------------------------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGRV-------------------------------AHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCCC-------------------------------ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 489999999999888851110 1456899999999999999999998642
Q ss_pred E-------------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhh
Q 008329 358 F-------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 358 f-------------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~ 412 (570)
. +.++++ +..+ .+.++++..............||+|||+|.|...
T Consensus 66 ~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~-----~~~~---vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-- 135 (585)
T PRK14950 66 TNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA-----SHTS---VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-- 135 (585)
T ss_pred CCCCCCCCCccCHHHHHHhcCCCCeEEEEecc-----ccCC---HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--
Confidence 2 111111 1111 1223343332222112245679999999999865
Q ss_pred hcccCCCCchHHHHHHHHHHHcC
Q 008329 413 SLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.||+.||+
T Consensus 136 ------------a~naLLk~LEe 146 (585)
T PRK14950 136 ------------AFNALLKTLEE 146 (585)
T ss_pred ------------HHHHHHHHHhc
Confidence 78999999994
No 143
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=8.6e-10 Score=117.05 Aligned_cols=110 Identities=29% Similarity=0.314 Sum_probs=70.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.+...+.... .++++||+||||+|||++|+++++.++++
T Consensus 18 ~iig~~~~~~~l~~~i~~~~-------------------------------~~~~~L~~G~~G~GKt~~a~~la~~l~~~ 66 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH-------------------------------LAQALLFCGPRGVGKTTCARILARKINQP 66 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 37999999999988885110 12578899999999999999999988653
Q ss_pred EEEeecc-------cccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHH
Q 008329 358 FVIADAT-------TLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (570)
Q Consensus 358 fv~i~~s-------~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL 430 (570)
.....+. ++......+ ...+++++..+..........||+|||+|.+... .++.|+
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll 129 (367)
T PRK14970 67 GYDDPNEDFSFNIFELDAASNNS---VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFL 129 (367)
T ss_pred CCCCCCCCCCcceEEeccccCCC---HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHH
Confidence 2111110 010001111 1334455443322222245679999999998764 688899
Q ss_pred HHHcC
Q 008329 431 KMLEG 435 (570)
Q Consensus 431 ~~LEg 435 (570)
+.+++
T Consensus 130 ~~le~ 134 (367)
T PRK14970 130 KTLEE 134 (367)
T ss_pred HHHhC
Confidence 99984
No 144
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.10 E-value=8.7e-10 Score=122.94 Aligned_cols=145 Identities=21% Similarity=0.325 Sum_probs=97.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+.+.+.+.+...- ....+|||+|++||||+++|++|....
T Consensus 197 ~liG~s~~~~~~~~~~~~~a------------------------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~ 246 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVA------------------------------RSNSTVLLRGESGTGKELIAKAIHYLSPRA 246 (534)
T ss_pred ceEECCHHHHHHHHHHHHHh------------------------------CcCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 57899999888888774111 123689999999999999999999875
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhh-------hc----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLT-------VS----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~-------~a----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
+.+|+.++|+.+.+. . .-..+|. .+ ......+.+++||||||+.+...
T Consensus 247 ~~pfv~i~c~~~~~~-~-------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~------------- 305 (534)
T TIGR01817 247 KRPFVKVNCAALSET-L-------LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA------------- 305 (534)
T ss_pred CCCeEEeecCCCCHH-H-------HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH-------------
Confidence 579999999887531 1 0111221 11 11123457899999999999987
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccc
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I 485 (570)
+|..|+++++...+.- .+... . ...++++|++++. ++++.+..+.|...+
T Consensus 306 -~Q~~Ll~~l~~~~~~~-------~~~~~--~-~~~~~riI~~s~~-~l~~~~~~~~f~~~L 355 (534)
T TIGR01817 306 -FQAKLLRVLQEGEFER-------VGGNR--T-LKVDVRLVAATNR-DLEEAVAKGEFRADL 355 (534)
T ss_pred -HHHHHHHHHhcCcEEE-------CCCCc--e-EeecEEEEEeCCC-CHHHHHHcCCCCHHH
Confidence 8999999998432211 01111 1 1235788888765 467777766665543
No 145
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.08 E-value=3.6e-10 Score=121.41 Aligned_cols=142 Identities=22% Similarity=0.342 Sum_probs=98.8
Q ss_pred hcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh-
Q 008329 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (570)
Q Consensus 276 ~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l- 354 (570)
...+||.+...+.+.+.+.. +. ....+||++|++||||+.+|++|....
T Consensus 77 ~~~LIG~~~~~~~~~eqik~-~a-----------------------------p~~~~vLi~GetGtGKel~A~~iH~~s~ 126 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA-YA-----------------------------PSGLPVLIIGETGTGKELFARLIHALSA 126 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh-hC-----------------------------CCCCcEEEecCCCccHHHHHHHHHHhhh
Confidence 34589999999988888852 11 123689999999999999999997443
Q ss_pred ---CCcEEEeecccccccc----cccchhhHHHHHHhhhcc----hhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 355 ---NVPFVIADATTLTQAG----YVGEDVESILYKLLTVSD----YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 355 ---g~~fv~i~~s~l~~~g----~vGe~~~~~lr~lf~~a~----~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
..||+.+||+++.+.. +.|. ....|..+. .....+.+|+||+|||..+.+.
T Consensus 127 r~~~~PFI~~NCa~~~en~~~~eLFG~-----~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~------------- 188 (403)
T COG1221 127 RRAEAPFIAFNCAAYSENLQEAELFGH-----EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE------------- 188 (403)
T ss_pred cccCCCEEEEEHHHhCcCHHHHHHhcc-----ccceeecccCCcCchheecCCCEEehhhhhhCCHh-------------
Confidence 6799999999987521 1111 112222222 2345578899999999999987
Q ss_pred HHHHHHHHHHcCCeee-ecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHh
Q 008329 424 GVQQALLKMLEGTVVN-VPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISE 478 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~-ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~ 478 (570)
.|..|+.+||...+. +.+ -.....++++||||+-. +++.+..
T Consensus 189 -~Q~kLl~~le~g~~~rvG~-----------~~~~~~dVRli~AT~~~-l~~~~~~ 231 (403)
T COG1221 189 -GQEKLLRVLEEGEYRRVGG-----------SQPRPVDVRLICATTED-LEEAVLA 231 (403)
T ss_pred -HHHHHHHHHHcCceEecCC-----------CCCcCCCceeeeccccC-HHHHHHh
Confidence 899999999954332 211 12345679999999854 6666655
No 146
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.08 E-value=1.8e-09 Score=113.58 Aligned_cols=146 Identities=19% Similarity=0.327 Sum_probs=95.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|.+.+.+.+.+.+...- ....+|||+|++||||+++|++|....
T Consensus 7 ~liG~S~~~~~~~~~i~~~a------------------------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~ 56 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA------------------------------PLDKPVLIIGERGTGKELIASRLHYLSSRW 56 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCcHHHHHHHHHHhCCcc
Confidence 47999999998888875211 123689999999999999999998765
Q ss_pred CCcEEEeeccccccc----ccccchhhHHHHHHhhhc----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.||+.++|..+.+. .+.|.. ...+..+ ...+..+.+++||||||+.+... +|
T Consensus 57 ~~pfv~v~c~~~~~~~~~~~lfg~~-----~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~Q 117 (326)
T PRK11608 57 QGPFISLNCAALNENLLDSELFGHE-----AGAFTGAQKRHPGRFERADGGTLFLDELATAPML--------------VQ 117 (326)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcccc-----ccccCCcccccCCchhccCCCeEEeCChhhCCHH--------------HH
Confidence 469999999986521 011110 0001000 11234467899999999999987 89
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccc
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~ 483 (570)
..|+.+++...+. ..+..... ..++++|++++. ++++.+..+.|..
T Consensus 118 ~~L~~~l~~~~~~---------~~g~~~~~-~~~~RiI~~s~~-~l~~l~~~g~f~~ 163 (326)
T PRK11608 118 EKLLRVIEYGELE---------RVGGSQPL-QVNVRLVCATNA-DLPAMVAEGKFRA 163 (326)
T ss_pred HHHHHHHhcCcEE---------eCCCCcee-eccEEEEEeCch-hHHHHHHcCCchH
Confidence 9999999843211 00111111 235788888765 4666676666644
No 147
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.8e-09 Score=115.41 Aligned_cols=110 Identities=23% Similarity=0.308 Sum_probs=71.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++..... ++.+||+||+|+||+++|.++|+.+.+.
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl-------------------------------~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRL-------------------------------HHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hccChHHHHHHHHHHHHcCCC-------------------------------CceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 389999999999998852111 2568899999999999999999988431
Q ss_pred E----------------------------------EEeec--ccccc--cccccchhhHHHHHHhhhcchhHhhhcCeEE
Q 008329 358 F----------------------------------VIADA--TTLTQ--AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (570)
Q Consensus 358 f----------------------------------v~i~~--s~l~~--~g~vGe~~~~~lr~lf~~a~~~v~~~~~gIL 399 (570)
- +.+.. .+-.. ...++ .+.++++............+.|+
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~---VdqiR~l~~~~~~~~~~~~~kVv 145 (365)
T PRK07471 69 PPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT---VDEVRELISFFGLTAAEGGWRVV 145 (365)
T ss_pred CCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccccc---HHHHHHHHHHhCcCcccCCCEEE
Confidence 1 00100 00000 00011 12344444333322333567799
Q ss_pred EEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 400 fIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+|||+|.+... .+++||+.+|.
T Consensus 146 iIDead~m~~~--------------aanaLLK~LEe 167 (365)
T PRK07471 146 IVDTADEMNAN--------------AANALLKVLEE 167 (365)
T ss_pred EEechHhcCHH--------------HHHHHHHHHhc
Confidence 99999999876 89999999994
No 148
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.07 E-value=6.5e-10 Score=124.12 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=100.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH----
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY---- 353 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~---- 353 (570)
.++|++.+.+.+.+.+...- ....+|||+|++||||+++|++|...
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A------------------------------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~ 269 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA------------------------------RSSAAVLIQGETGTGKELAAQAIHREYFAR 269 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCCCHHHHHHHHHHhhccc
Confidence 38999999998888874111 12368999999999999999999887
Q ss_pred -------hCCcEEEeeccccccc----ccccchhhHHHHHHhhhc-----chhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 354 -------VNVPFVIADATTLTQA----GYVGEDVESILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 354 -------lg~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a-----~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
.+.||+.++|+.+.+. .+.|.. ...|..+ ......+.+++||||||+.|...
T Consensus 270 ~~~~S~r~~~pfv~inCaal~e~lleseLFG~~-----~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------- 337 (538)
T PRK15424 270 HDARQGKKSHPFVAVNCGAIAESLLEAELFGYE-----EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------- 337 (538)
T ss_pred ccccCccCCCCeEEeecccCChhhHHHHhcCCc-----cccccCccccccCCchhccCCCEEEEcChHhCCHH-------
Confidence 3679999999987531 111110 0111111 11233467899999999999987
Q ss_pred CCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccc
Q 008329 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~ 486 (570)
+|..|+.+|++..+.- .+... . -.-++++|++++.+ +++.+.+++|...+.
T Consensus 338 -------~Q~kLl~~L~e~~~~r-------~G~~~--~-~~~dvRiIaat~~~-L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 338 -------LQTRLLRVLEEKEVTR-------VGGHQ--P-VPVDVRVISATHCD-LEEDVRQGRFRRDLF 388 (538)
T ss_pred -------HHHHHHhhhhcCeEEe-------cCCCc--e-eccceEEEEecCCC-HHHHHhcccchHHHH
Confidence 9999999998543211 11111 1 13358899988764 778888777765433
No 149
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=1.6e-09 Score=122.94 Aligned_cols=105 Identities=28% Similarity=0.321 Sum_probs=72.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|..++.... -++.+||+||+|+|||++|+++|+.+++.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-------------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-------------------------------LAHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-------------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999998885111 12458899999999999999999988642
Q ss_pred -------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhh
Q 008329 358 -------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 358 -------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~ 412 (570)
++.+++.+ ..+ ...++++...+......+...|++|||+|.+...
T Consensus 67 ~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~-----~~~---vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-- 136 (614)
T PRK14971 67 NLTADGEACNECESCVAFNEQRSYNIHELDAAS-----NNS---VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-- 136 (614)
T ss_pred CCCCCCCCCCcchHHHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--
Confidence 22222211 011 2234455443332223345679999999999765
Q ss_pred hcccCCCCchHHHHHHHHHHHcC
Q 008329 413 SLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++|++.||.
T Consensus 137 ------------a~naLLK~LEe 147 (614)
T PRK14971 137 ------------AFNAFLKTLEE 147 (614)
T ss_pred ------------HHHHHHHHHhC
Confidence 79999999994
No 150
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.05 E-value=1.7e-09 Score=114.00 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=46.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
.++|.++.++.|...+...... ..+++++++||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~----------------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRG----------------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcC----------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999888521110 1125789999999999999999987652
Q ss_pred -------CcEEEeeccccc
Q 008329 356 -------VPFVIADATTLT 367 (570)
Q Consensus 356 -------~~fv~i~~s~l~ 367 (570)
..++.++|....
T Consensus 68 ~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 68 AEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred hhccCCceEEEEEECCCCC
Confidence 457778886543
No 151
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2.8e-09 Score=113.45 Aligned_cols=48 Identities=31% Similarity=0.374 Sum_probs=39.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
.|+||+++++.|..++.... .++.+||+||+|+|||++|+.+|+.+.+
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr-------------------------------l~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK-------------------------------LHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 38999999999999885111 1246889999999999999999999855
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.04 E-value=1.6e-09 Score=95.77 Aligned_cols=88 Identities=34% Similarity=0.588 Sum_probs=56.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++++||||+|||++++.+++.+ +.+++.+++.+.... .......... .............+.+|+|||++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVVAELFGHF--LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHHHHHhhhh--hHhHHHHhhccCCCeEEEEeChhhh
Confidence 678999999999999999999998 788888888765421 1111000000 0000001112246789999999998
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+. ....+++.++.
T Consensus 97 ~~~--------------~~~~~~~~i~~ 110 (151)
T cd00009 97 SRG--------------AQNALLRVLET 110 (151)
T ss_pred hHH--------------HHHHHHHHHHh
Confidence 544 55667777763
No 153
>PHA02244 ATPase-like protein
Probab=99.03 E-value=2.1e-09 Score=114.60 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=73.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
.++||+||||||||++|+++|..++.+++.++... ......|.. .. ...+...+...+...+++|+|||++.+.++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~-d~~~L~G~i-~~--~g~~~dgpLl~A~~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM-DEFELKGFI-DA--NGKFHETPFYEAFKKGGLFFIDEIDASIPE 195 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh-HHHhhcccc-cc--cccccchHHHHHhhcCCEEEEeCcCcCCHH
Confidence 58999999999999999999999999999887431 111111110 00 001111222222357899999999999887
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCC
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF 469 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~ 469 (570)
++..|+.++++..+..+.. . .....++.+|+|+|.
T Consensus 196 --------------vq~~L~~lLd~r~l~l~g~--~--------i~~h~~FRlIATsN~ 230 (383)
T PHA02244 196 --------------ALIIINSAIANKFFDFADE--R--------VTAHEDFRVISAGNT 230 (383)
T ss_pred --------------HHHHHHHHhccCeEEecCc--E--------EecCCCEEEEEeeCC
Confidence 8899999998655443211 1 123456888888886
No 154
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=3.4e-09 Score=110.43 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=71.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+.+++.|...+.... -++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-------------------------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-------------------------------FSHAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-------------------------------CCceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 38999999999998874110 12456899999999999999999987442
Q ss_pred --------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHH
Q 008329 358 --------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (570)
Q Consensus 358 --------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~L 429 (570)
+..+...+ ...++ .+.++++..........+...|++|||+|.+... .+++|
T Consensus 54 ~~~~~h~D~~~~~~~~---~~~i~---v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naL 113 (313)
T PRK05564 54 SQQREYVDIIEFKPIN---KKSIG---VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAF 113 (313)
T ss_pred CCCCCCCCeEEecccc---CCCCC---HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHH
Confidence 22221110 11111 1235555443222222356779999999999876 89999
Q ss_pred HHHHcC
Q 008329 430 LKMLEG 435 (570)
Q Consensus 430 L~~LEg 435 (570)
|+.||+
T Consensus 114 LK~LEe 119 (313)
T PRK05564 114 LKTIEE 119 (313)
T ss_pred HHHhcC
Confidence 999994
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.02 E-value=2.2e-09 Score=110.40 Aligned_cols=104 Identities=29% Similarity=0.422 Sum_probs=65.7
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC--
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV-- 356 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~-- 356 (570)
++|++++++.|..++... ..++++|+||||+|||++++++++.+..
T Consensus 19 ~~g~~~~~~~l~~~i~~~--------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~ 66 (319)
T PRK00440 19 IVGQEEIVERLKSYVKEK--------------------------------NMPHLLFAGPPGTGKTTAALALARELYGED 66 (319)
T ss_pred hcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 789999999998887410 0146899999999999999999998732
Q ss_pred ---cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHH
Q 008329 357 ---PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 433 (570)
Q Consensus 357 ---~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~L 433 (570)
.++.+++++..... .....+.+.....+ .......+|+|||+|.+... .++.|++.+
T Consensus 67 ~~~~~i~~~~~~~~~~~----~~~~~i~~~~~~~~--~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~l 126 (319)
T PRK00440 67 WRENFLELNASDERGID----VIRNKIKEFARTAP--VGGAPFKIIFLDEADNLTSD--------------AQQALRRTM 126 (319)
T ss_pred cccceEEeccccccchH----HHHHHHHHHHhcCC--CCCCCceEEEEeCcccCCHH--------------HHHHHHHHH
Confidence 24444433321100 00111111111111 11124569999999999765 577899988
Q ss_pred c
Q 008329 434 E 434 (570)
Q Consensus 434 E 434 (570)
+
T Consensus 127 e 127 (319)
T PRK00440 127 E 127 (319)
T ss_pred h
Confidence 8
No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.7e-09 Score=112.40 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=68.4
Q ss_pred cCC-hHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 279 VIG-QERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 279 ViG-qd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
|+| |+.+++.|...+.... -++.+||+||+|+||+++|+++|+.+.++
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-------------------------------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-------------------------------LSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 566 9999999998884110 12456899999999999999999987432
Q ss_pred EE--Ee--------------ecccccccccccchh-hHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCC
Q 008329 358 FV--IA--------------DATTLTQAGYVGEDV-ESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDV 420 (570)
Q Consensus 358 fv--~i--------------~~s~l~~~g~vGe~~-~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~ 420 (570)
-. .. +-.|+.-....|... ...++++..........+...|++|||+|.+...
T Consensus 56 ~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~---------- 125 (329)
T PRK08058 56 ERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS---------- 125 (329)
T ss_pred CCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH----------
Confidence 10 00 000111000001110 1234444333221112245679999999999876
Q ss_pred chHHHHHHHHHHHcC
Q 008329 421 SGEGVQQALLKMLEG 435 (570)
Q Consensus 421 ~~e~vq~~LL~~LEg 435 (570)
.+++||+.||+
T Consensus 126 ----a~NaLLK~LEE 136 (329)
T PRK08058 126 ----AANSLLKFLEE 136 (329)
T ss_pred ----HHHHHHHHhcC
Confidence 89999999994
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=4.2e-09 Score=110.52 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=71.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+||+++++.|..++.... -++.+||+||+|+||+++|.++|+.+.+.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-------------------------------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-------------------------------IAPAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 48999999999999985111 12688999999999999999999887332
Q ss_pred E----------EEeecccccc--ccc--ccch-------------------hhHHHHHHhhhcchhHhhhcCeEEEEcch
Q 008329 358 F----------VIADATTLTQ--AGY--VGED-------------------VESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (570)
Q Consensus 358 f----------v~i~~s~l~~--~g~--vGe~-------------------~~~~lr~lf~~a~~~v~~~~~gILfIDEI 404 (570)
- ...+..|+.- ..+ -|.. -...++++..........+...|++||++
T Consensus 54 ~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~a 133 (314)
T PRK07399 54 GSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDA 133 (314)
T ss_pred CCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEch
Confidence 1 0011111110 000 0100 01123444333222222356789999999
Q ss_pred hhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 405 DKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 405 D~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
|+|... .+|+||+.||+
T Consensus 134 e~m~~~--------------aaNaLLK~LEE 150 (314)
T PRK07399 134 ETMNEA--------------AANALLKTLEE 150 (314)
T ss_pred hhcCHH--------------HHHHHHHHHhC
Confidence 999876 89999999994
No 158
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.00 E-value=3.2e-09 Score=102.26 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=55.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc------------------------EEEeecccccccccccchhhHHHHHHhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~ 386 (570)
+.+||+||+|+|||++|+.+++.+.+. +..+.... +..+ .+.++++...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~~---~~~i~~i~~~ 87 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSIK---VDQVRELVEF 87 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcCC---HHHHHHHHHH
Confidence 568899999999999999999987542 22111110 0111 1234444433
Q ss_pred cchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 387 a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
...........|++|||+|.+... .++.||+.||.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~ 122 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE 122 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 332222356679999999999876 78899999984
No 159
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.00 E-value=7.8e-09 Score=110.15 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=46.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|.+...+.|...+...... ..+.+++++||||||||++++.+++.+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~----------------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRG----------------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4789999999998888522210 112578999999999999999999876
Q ss_pred --CCcEEEeecccc
Q 008329 355 --NVPFVIADATTL 366 (570)
Q Consensus 355 --g~~fv~i~~s~l 366 (570)
+..++.++|...
T Consensus 83 ~~~~~~v~in~~~~ 96 (394)
T PRK00411 83 AVKVVYVYINCQID 96 (394)
T ss_pred cCCcEEEEEECCcC
Confidence 466788888654
No 160
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.99 E-value=1.3e-09 Score=121.06 Aligned_cols=150 Identities=20% Similarity=0.284 Sum_probs=99.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+.+.+.+.+... .....+|||+|++||||+++|++|....
T Consensus 188 ~iig~s~~~~~~~~~i~~~------------------------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~ 237 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVV------------------------------AASDLNVLILGETGVGKELVARAIHAASPRA 237 (509)
T ss_pred ceeecCHHHHHHHHHHHHH------------------------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcC
Confidence 4788888888887777411 1123689999999999999999998875
Q ss_pred CCcEEEeeccccccc----ccccchhhHHHHHHhhhc----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.+|+.++|..+.+. .+.|.. ...|..+ ......+.+++||||||+.|... +|
T Consensus 238 ~~p~v~v~c~~~~~~~~e~~lfG~~-----~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q 298 (509)
T PRK05022 238 DKPLVYLNCAALPESLAESELFGHV-----KGAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQ 298 (509)
T ss_pred CCCeEEEEcccCChHHHHHHhcCcc-----ccccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HH
Confidence 579999999987531 011110 0011111 11233467899999999999987 89
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f 487 (570)
..|+++++...+.- .+... . ...++++|++++.+ +++.+..+.|...+.|
T Consensus 299 ~~Ll~~l~~~~~~~-------~g~~~--~-~~~~~RiI~~t~~~-l~~~~~~~~f~~dL~~ 348 (509)
T PRK05022 299 AKLLRVLQYGEIQR-------VGSDR--S-LRVDVRVIAATNRD-LREEVRAGRFRADLYH 348 (509)
T ss_pred HHHHHHHhcCCEee-------CCCCc--c-eecceEEEEecCCC-HHHHHHcCCccHHHHh
Confidence 99999998432210 01111 1 12358889888764 7788887777665433
No 161
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.8e-09 Score=109.58 Aligned_cols=118 Identities=31% Similarity=0.359 Sum_probs=77.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC------------------------CcEEEeecccccccccccchhhHHHHHHhhhc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLTVS 387 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg------------------------~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a 387 (570)
.+||+||||+|||++|.++|+.+. -.++++++++..... +. ...++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~-i~---~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID-II---VEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc-ch---HHHHHHHHHHh
Confidence 499999999999999999999986 357777777654221 11 22333333222
Q ss_pred chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecC
Q 008329 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (570)
Q Consensus 388 ~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~ag 467 (570)
..........|++|||+|.|... ++++|++.||. ...+.+||+.+
T Consensus 102 ~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEe---------------------p~~~~~~il~~ 146 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEE---------------------PPKNTRFILIT 146 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhcc---------------------CCCCeEEEEEc
Confidence 11111245679999999999976 89999999994 24556777777
Q ss_pred CCCC-hHHHHHhcccccccccCch
Q 008329 468 AFVD-IEKTISERRQDSSIGFGAP 490 (570)
Q Consensus 468 n~~d-Le~~l~~Rrfd~~I~f~~p 490 (570)
|... +...++.|-+ .+.|..+
T Consensus 147 n~~~~il~tI~SRc~--~i~f~~~ 168 (325)
T COG0470 147 NDPSKILPTIRSRCQ--RIRFKPP 168 (325)
T ss_pred CChhhccchhhhcce--eeecCCc
Confidence 7444 5555555533 3455433
No 162
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.99 E-value=2.2e-09 Score=119.74 Aligned_cols=148 Identities=18% Similarity=0.325 Sum_probs=98.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+.+.+.+.+...- ....+|||.|++||||+++|++|....
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A------------------------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~ 262 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA------------------------------RSDATVLILGESGTGKELVAQAIHQLSGRR 262 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCcCHHHHHHHHHHhcCcC
Confidence 37999999998888774111 123689999999999999999998764
Q ss_pred CCcEEEeeccccccc----ccccchhhHHHHHHhhhc-----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 355 g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a-----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
+.||+.++|..+.+. .+.|.. ...|..+ ......+.+++||||||+.|... +
T Consensus 263 ~~pfv~inC~~l~e~lleseLFG~~-----~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~ 323 (526)
T TIGR02329 263 DFPFVAINCGAIAESLLEAELFGYE-----EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------L 323 (526)
T ss_pred CCCEEEeccccCChhHHHHHhcCCc-----ccccccccccccccchhhcCCceEEecChHhCCHH--------------H
Confidence 679999999887531 111110 0111111 11233467899999999999987 9
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccc
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSI 485 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I 485 (570)
|..|+++|++..+.- .+.... ..-++++|++++.+ +.+.+..++|...+
T Consensus 324 Q~~Ll~~L~~~~~~r-------~g~~~~---~~~dvRiIaat~~~-l~~~v~~g~fr~dL 372 (526)
T TIGR02329 324 QTRLLRVLEEREVVR-------VGGTEP---VPVDVRVVAATHCA-LTTAVQQGRFRRDL 372 (526)
T ss_pred HHHHHHHHhcCcEEe-------cCCCce---eeecceEEeccCCC-HHHHhhhcchhHHH
Confidence 999999998543211 111111 12357888888764 77777777776533
No 163
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.98 E-value=1.8e-09 Score=119.67 Aligned_cols=164 Identities=16% Similarity=0.274 Sum_probs=95.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc--EEEeecccccc-cccccch--h----------hHHHHHHhhh----cchhH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ-AGYVGED--V----------ESILYKLLTV----SDYNV 391 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l~~-~g~vGe~--~----------~~~lr~lf~~----a~~~v 391 (570)
.+++|+||||+|||++++.++..+... -..+..+.+.. .+..... . ......++.. .+..+
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 578899999999999999999876211 01112211110 0000000 0 0000011111 12245
Q ss_pred hhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 392 AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 392 ~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
..+.+++|||||++.+.++ +++.|++.||+..+.|...+.. .. ...++.+|+++|...
T Consensus 291 ~~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~-------~~-~pa~f~lIAa~NP~p 348 (506)
T PRK09862 291 SLAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAK-------IT-YPARFQLVAAMNPSP 348 (506)
T ss_pred hhccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcc-------ee-ccCCEEEEEeecCcc
Confidence 5678899999999998876 9999999999777766333221 12 245688999988642
Q ss_pred hHHHHHhcccccccc-cCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHH
Q 008329 472 IEKTISERRQDSSIG-FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLV 546 (570)
Q Consensus 472 Le~~l~~Rrfd~~I~-f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~ 546 (570)
.+ |+.+.+. |... ++..++.. +...+++||+..+.+...+.+++.
T Consensus 349 -------------cG~~~~~~c~-------c~~~---~~~~Y~~~-------ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 349 -------------TGHYQGNHNR-------CTPE---QTLRYLNR-------LSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred -------------ceecCCCCCC-------cCHH---HHHHHHhh-------CCHhHHhhccEEEEeCCCCHHHHh
Confidence 11 1111111 1222 22222222 778999999999999988766554
No 164
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.97 E-value=4.9e-09 Score=99.71 Aligned_cols=105 Identities=29% Similarity=0.440 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc---
Q 008329 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP--- 357 (570)
Q Consensus 281 Gqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~--- 357 (570)
||+++++.|..++..... +..+||+||+|+||+++|+++|+.+.+.
T Consensus 1 gq~~~~~~L~~~~~~~~l-------------------------------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL-------------------------------PHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------------------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred CcHHHHHHHHHHHHcCCc-------------------------------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 899999999988852111 2457899999999999999999887332
Q ss_pred --------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 358 --------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 358 --------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
++.++...... .++ .+.++++..............|++|||+|.|...
T Consensus 50 ~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~--~i~---i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------- 117 (162)
T PF13177_consen 50 EDPCGECRSCRRIEEGNHPDFIIIKPDKKKK--SIK---IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------- 117 (162)
T ss_dssp TT--SSSHHHHHHHTT-CTTEEEEETTTSSS--SBS---HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------
T ss_pred CCCCCCCHHHHHHHhccCcceEEEecccccc--hhh---HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------
Confidence 22232221100 111 2334444444332222356789999999999987
Q ss_pred CCCchHHHHHHHHHHHcC
Q 008329 418 RDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg 435 (570)
++++||+.||+
T Consensus 118 -------a~NaLLK~LEe 128 (162)
T PF13177_consen 118 -------AQNALLKTLEE 128 (162)
T ss_dssp -------HHHHHHHHHHS
T ss_pred -------HHHHHHHHhcC
Confidence 99999999995
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.97 E-value=1.1e-08 Score=103.49 Aligned_cols=175 Identities=22% Similarity=0.326 Sum_probs=112.6
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---C
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---N 355 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g 355 (570)
++|.++.|+.|.+-....... .+..++||+|+.|||||++++++...+ +
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl~G----------------------------~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFLQG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred hcCHHHHHHHHHHHHHHHHcC----------------------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 799999999998877543331 134799999999999999999999876 6
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..++++...++.. +.. +.+.+... ..+=|||+|++. -.. .+.--..|-.+|||
T Consensus 81 LRlIev~k~~L~~-------l~~-l~~~l~~~------~~kFIlf~DDLs---Fe~----------~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 81 LRLIEVSKEDLGD-------LPE-LLDLLRDR------PYKFILFCDDLS---FEE----------GDTEYKALKSVLEG 133 (249)
T ss_pred ceEEEECHHHhcc-------HHH-HHHHHhcC------CCCEEEEecCCC---CCC----------CcHHHHHHHHHhcC
Confidence 6778877766552 122 22222222 245699999732 221 12245778889997
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCCh-HHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcC
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~ 514 (570)
.. .-..+|+++.+|+|...+ .+...++.. .++ +.+.
T Consensus 134 gl-----------------e~~P~NvliyATSNRRHLv~E~~~d~~~-------~~~-------------------~eih 170 (249)
T PF05673_consen 134 GL-----------------EARPDNVLIYATSNRRHLVPESFSDRED-------IQD-------------------DEIH 170 (249)
T ss_pred cc-----------------ccCCCcEEEEEecchhhccchhhhhccC-------CCc-------------------cccC
Confidence 43 123678999999987552 222221111 000 0111
Q ss_pred hhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 515 ~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
+.|-.+. +-.+..||+.++.|.+++.++..+|+....
T Consensus 171 ~~d~~eE--klSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 171 PSDTIEE--KLSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred cchHHHH--HHhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 1111111 136788999999999999999999998755
No 166
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.96 E-value=2.7e-09 Score=120.65 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=76.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC--cEEEeecccccccccccch-hhHHHHH-HhhhcchhHhhhcCeEEEEcchhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGED-VESILYK-LLTVSDYNVAAAQQGIVYIDEVDK 406 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~l~~~g~vGe~-~~~~lr~-lf~~a~~~v~~~~~gILfIDEID~ 406 (570)
++|||.|+||||||++|+++++.+.. +|+.+.... ......|.- +...+.. .+......+..+.++|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~-t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGV-TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc-chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 79999999999999999999998854 688887532 223334431 1111110 011112233446779999999999
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
+.+. +|+.|+++|+...+++...|. .... ..++.+|++.|..
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~-------~~~~-p~~f~lIAt~np~ 137 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGI-------SVVH-PAKFALIATYDPA 137 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCC-------ceee-cCceEEEEecCCc
Confidence 9987 999999999976665532221 1122 3457888877754
No 167
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.95 E-value=7e-09 Score=101.83 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=52.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++|+||+|||||++|+++++.+ +.+++.++++++... ....+... ....+|+|||+|.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA----------DPEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh----------HHHHHhhc------ccCCEEEEeChhhh
Confidence 689999999999999999999876 467777887765421 01111111 23459999999998
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..... .++.|..+++
T Consensus 103 ~~~~~------------~~~~L~~~l~ 117 (226)
T TIGR03420 103 AGQPE------------WQEALFHLYN 117 (226)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 65311 3566777665
No 168
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.93 E-value=6.4e-09 Score=111.52 Aligned_cols=143 Identities=24% Similarity=0.293 Sum_probs=85.5
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
....-++||+..|..|.....+ ..-+++|+.|+.|+||||++|+|+..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~--------------------------------P~iggvLI~G~kGtaKSt~~Rala~L 61 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD--------------------------------PQIGGALIAGEKGTAKSTLARALADL 61 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc--------------------------------cccceeEEecCCCccHHHHHHHHHHh
Confidence 3445689999999877543210 11278999999999999999999998
Q ss_pred hCCcEEEeec----cc----------------------------------ccccc-cccc-hhhHHHHHHhh-hcchhHh
Q 008329 354 VNVPFVIADA----TT----------------------------------LTQAG-YVGE-DVESILYKLLT-VSDYNVA 392 (570)
Q Consensus 354 lg~~fv~i~~----s~----------------------------------l~~~g-~vGe-~~~~~lr~lf~-~a~~~v~ 392 (570)
+.---+...| .. ....+ .+|. ++.+.+..-.. ..+..+.
T Consensus 62 Lp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa 141 (423)
T COG1239 62 LPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLA 141 (423)
T ss_pred CCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchh
Confidence 8211111111 00 00011 2332 12222221111 1223456
Q ss_pred hhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 393 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 393 ~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
.+..|||++||+..|... +++.||.+++.....| ...|..+. ...++++|+|.|..
T Consensus 142 ~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~v-------ereGisi~-hpa~fvligTmNPE 197 (423)
T COG1239 142 RANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDV-------EREGISIR-HPARFLLIGTMNPE 197 (423)
T ss_pred hccCCEEEEeccccccHH--------------HHHHHHHHHHhCCcee-------eeCceeec-cCccEEEEeecCcc
Confidence 788999999999999876 9999999998532222 11222112 24468889998864
No 169
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.92 E-value=6.7e-09 Score=118.22 Aligned_cols=147 Identities=17% Similarity=0.245 Sum_probs=98.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|.+.+.+.+.+.+...-+ ...+|||+|++||||+++|++|.+..
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~------------------------------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~ 375 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAK------------------------------SSFPVLLCGEEGVGKALLAQAIHNESERA 375 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhC------------------------------cCCCEEEECCCCcCHHHHHHHHHHhCCcc
Confidence 378999888887777641111 23689999999999999999998875
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhc--------chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVS--------DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a--------~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.||+.++|..+.+. ....++|... ...+..+.+++||||||+.|... +|
T Consensus 376 ~~pfv~vnc~~~~~~--------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q 433 (638)
T PRK11388 376 AGPYIAVNCQLYPDE--------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQ 433 (638)
T ss_pred CCCeEEEECCCCChH--------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH--------------HH
Confidence 479999999887531 1111222211 01122357899999999999987 99
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f 487 (570)
..|+++++...+.- .+....+. -++++|++++.+ +.+.+..+.|...+.|
T Consensus 434 ~~Ll~~l~~~~~~~-------~~~~~~~~---~~~riI~~t~~~-l~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 434 SALLQVLKTGVITR-------LDSRRLIP---VDVRVIATTTAD-LAMLVEQNRFSRQLYY 483 (638)
T ss_pred HHHHHHHhcCcEEe-------CCCCceEE---eeEEEEEeccCC-HHHHHhcCCChHHHhh
Confidence 99999998543210 01111112 247888888754 7788887777655543
No 170
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.90 E-value=9.7e-09 Score=103.17 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.+++|+||+|||||+|++++++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999998763
No 171
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.90 E-value=1.1e-08 Score=114.25 Aligned_cols=147 Identities=17% Similarity=0.298 Sum_probs=96.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|.+.+.+.+.+.+... .....+|||+|++||||+++|+++....
T Consensus 205 ~~ig~s~~~~~~~~~~~~~------------------------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~ 254 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKL------------------------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRG 254 (520)
T ss_pred ceeECCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4799998888777766411 0123689999999999999999997665
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhc-----------chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVS-----------DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-----------~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
..||+.++|+.+.+. ..-.++|... ......+.+++||||||+.|.+.
T Consensus 255 ~~pfv~inca~~~~~--------~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~------------- 313 (520)
T PRK10820 255 KKPFLALNCASIPDD--------VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR------------- 313 (520)
T ss_pred CCCeEEeccccCCHH--------HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------
Confidence 468999999887531 1111222111 11123456899999999999987
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f 487 (570)
+|..|++++++... +..+.... ...++++|++++. ++.+.+..+.|...+.|
T Consensus 314 -~Q~~Ll~~l~~~~~-------~~~g~~~~---~~~~vRiI~st~~-~l~~l~~~g~f~~dL~~ 365 (520)
T PRK10820 314 -MQAKLLRFLNDGTF-------RRVGEDHE---VHVDVRVICATQK-NLVELVQKGEFREDLYY 365 (520)
T ss_pred -HHHHHHHHHhcCCc-------ccCCCCcc---eeeeeEEEEecCC-CHHHHHHcCCccHHHHh
Confidence 89999999984321 11111111 1335788887765 47777777766554333
No 172
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.89 E-value=1.3e-08 Score=114.60 Aligned_cols=200 Identities=18% Similarity=0.210 Sum_probs=113.2
Q ss_pred HHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCccc--ccC-CcEEEECCCCCchHHH
Q 008329 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE--LEK-SNILLMGPTGSGKTLL 346 (570)
Q Consensus 270 el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~--i~~-~~vLL~GPPGTGKTtL 346 (570)
+.......+++|.+..-+.+..++..+-.-.+.....++.+. .+....+.++...-. .++ +-+||+||||-|||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s-~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLAS-KGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTL 342 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccc-cccchhhhhhcccCccCCCccceEEeecCCCCChhHH
Confidence 333333345788888888888888644444444333333221 122222333322222 222 3455999999999999
Q ss_pred HHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 347 AKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 347 AraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
|+.||+.+|..++++++++-.... .+...+..........-+..+|..|+|||||..... +.
T Consensus 343 AHViAkqaGYsVvEINASDeRt~~----~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~V 404 (877)
T KOG1969|consen 343 AHVIAKQAGYSVVEINASDERTAP----MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AV 404 (877)
T ss_pred HHHHHHhcCceEEEecccccccHH----HHHHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HH
Confidence 999999999999999999855322 222333333222211112257889999999998754 78
Q ss_pred HHHHHHHc--CCeeeecC---CCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhh
Q 008329 427 QALLKMLE--GTVVNVPE---KGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 427 ~~LL~~LE--g~~v~ipe---~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e 493 (570)
+.|+.++. +...+=++ .+.++..++ ..-+..++.||..-|. ..+-..|.+...|.|..|...
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~---~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s 471 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRS---KLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQS 471 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhcc---ccccCCEEEEecCccc--hhhhhcccceEEEEecCCChh
Confidence 88888887 22111111 111222222 2235556666644332 222234456778888777554
No 173
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.7e-08 Score=106.67 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=57.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc------------------------EEEeecccccccccccchhhHHHHHHhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~ 386 (570)
+.+||+||+|+|||++|+.+|+.+.+. ++.+...+- ...++ .+.+|++...
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~--~~~i~---id~iR~l~~~ 97 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA--DKTIK---VDQVRELVSF 97 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC--CCCCC---HHHHHHHHHH
Confidence 568899999999999999999998542 222211100 01122 2345555444
Q ss_pred cchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 387 a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.......+...|++|||+|+|... .+|+||+.||+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE 132 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE 132 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC
Confidence 332222356679999999999876 89999999995
No 174
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=2.7e-08 Score=114.65 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=69.5
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcE-EEECCCCCchHHHHHHHHHHh-
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV- 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~v-LL~GPPGTGKTtLAraLA~~l- 354 (570)
+.+.|.++.++.|..++...... -.+.++ +++|+||||||++++.+.+.+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------------------------sgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------------------------SGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------------------------CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999888522221 012355 599999999999999998766
Q ss_pred ---------CCcEEEeecccccccc---------c------ccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 355 ---------NVPFVIADATTLTQAG---------Y------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 355 ---------g~~fv~i~~s~l~~~g---------~------vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
...++.++|..+.... + .|......+..+|..... ......||+|||||.|...
T Consensus 807 eeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 807 HKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred HHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc
Confidence 1456889986543211 0 010111222233322110 0122358999999999864
Q ss_pred hhhcccCCCCchHHHHHHHHHHHc
Q 008329 411 AESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.++.|+.+++
T Consensus 885 --------------~QDVLYnLFR 894 (1164)
T PTZ00112 885 --------------TQKVLFTLFD 894 (1164)
T ss_pred --------------HHHHHHHHHH
Confidence 3566777776
No 175
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.85 E-value=1.1e-08 Score=101.24 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=51.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++|+||+|||||++|+++++.+ +.+++.+++.+... . +.. .....+|+|||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------~-----~~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------A-----FDF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH---------H-----Hhh------cccCCEEEEeChhhc
Confidence 579999999999999999999876 55677777655431 0 000 123568999999998
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
... .+..|+.+++
T Consensus 103 ~~~--------------~~~~L~~~~~ 115 (227)
T PRK08903 103 DDA--------------QQIALFNLFN 115 (227)
T ss_pred Cch--------------HHHHHHHHHH
Confidence 654 5677777776
No 176
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.85 E-value=9.9e-09 Score=117.89 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=96.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+.+.+.+.+... .....+|||+|++|||||++|++|....
T Consensus 377 ~liG~S~~~~~~~~~~~~~------------------------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~ 426 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMV------------------------------AQSDSTVLILGETGTGKELIARAIHNLSGRN 426 (686)
T ss_pred ceeecCHHHHHHHHHHHHH------------------------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC
Confidence 4788888888877766411 0123689999999999999999998765
Q ss_pred CCcEEEeeccccccc----ccccchhhHHHHHHhhhc----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.+|+.++|..+.+. .+.|.. ...+..+ ...+..+.+++||||||+.+... +|
T Consensus 427 ~~~~v~i~c~~~~~~~~~~~lfg~~-----~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q 487 (686)
T PRK15429 427 NRRMVKMNCAAMPAGLLESDLFGHE-----RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQ 487 (686)
T ss_pred CCCeEEEecccCChhHhhhhhcCcc-----cccccccccchhhHHHhcCCCeEEEechhhCCHH--------------HH
Confidence 579999999876421 111210 0000000 01123356799999999999887 99
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccc
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~ 486 (570)
..|+..|+...+.- .+.. .....++++|++++.+ +++.+..+.|...+.
T Consensus 488 ~~L~~~l~~~~~~~-------~g~~---~~~~~~~RiI~~t~~~-l~~~~~~~~f~~~L~ 536 (686)
T PRK15429 488 PKLLRVLQEQEFER-------LGSN---KIIQTDVRLIAATNRD-LKKMVADREFRSDLY 536 (686)
T ss_pred HHHHHHHHhCCEEe-------CCCC---CcccceEEEEEeCCCC-HHHHHHcCcccHHHH
Confidence 99999998432211 0111 1113458888888754 777777777765433
No 177
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.83 E-value=3e-08 Score=105.38 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=44.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
-++||.+|.++.-..+..-... .+..+.+||.||||||||.||-++|+++|
T Consensus 25 GlVGQ~~AReAagiiv~mIk~~---------------------------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~ 77 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKEG---------------------------KIAGRAILIAGPPGTGKTALAMAIAKELGED 77 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHTT-----------------------------TT-EEEEEE-TTSSHHHHHHHHHHHCTTT
T ss_pred cccChHHHHHHHHHHHHHHhcc---------------------------cccCcEEEEeCCCCCCchHHHHHHHHHhCCC
Confidence 3799999999887666411111 12237899999999999999999999996
Q ss_pred CcEEEeeccccc
Q 008329 356 VPFVIADATTLT 367 (570)
Q Consensus 356 ~~fv~i~~s~l~ 367 (570)
.||+.++++++-
T Consensus 78 ~PF~~isgSEiy 89 (398)
T PF06068_consen 78 VPFVSISGSEIY 89 (398)
T ss_dssp S-EEEEEGGGG-
T ss_pred CCeeEcccceee
Confidence 788888888743
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=1.8e-08 Score=87.86 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=50.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc---EEEeecccccccccc------------cchhhHHHHHHhhhcchhHhhhc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP---FVIADATTLTQAGYV------------GEDVESILYKLLTVSDYNVAAAQ 395 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~---fv~i~~s~l~~~g~v------------Ge~~~~~lr~lf~~a~~~v~~~~ 395 (570)
.+++|+||||||||++++.+|..+... ++.+++......... ........+..+..+.. ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK----LK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh----cC
Confidence 578999999999999999999999765 777777654321100 01112223333333321 23
Q ss_pred CeEEEEcchhhhhhh
Q 008329 396 QGIVYIDEVDKITKK 410 (570)
Q Consensus 396 ~gILfIDEID~L~~~ 410 (570)
+.+|+|||++.+...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999999876
No 179
>PRK08727 hypothetical protein; Validated
Probab=98.81 E-value=3.9e-08 Score=98.69 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=46.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
..++|+||+|||||+|+++++..+ +.....++..++. ..+.+.+... ....+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~l------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA----------GRLRDALEAL------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh----------hhHHHHHHHH------hcCCEEEEeCcccc
Confidence 358899999999999999998765 3344444433321 1112222211 23358999999988
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..... .+..|+.+++
T Consensus 106 ~~~~~------------~~~~lf~l~n 120 (233)
T PRK08727 106 AGQRE------------DEVALFDFHN 120 (233)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 74321 3456666666
No 180
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.81 E-value=2.3e-09 Score=98.65 Aligned_cols=96 Identities=31% Similarity=0.625 Sum_probs=64.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC---cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV---PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~---~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+|+|+|++||||+++|++|...... +|+.+++..+. .++++. ..+++|||+|+|.+
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~-------a~~gtL~l~~i~~L 81 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ-------AKGGTLYLKNIDRL 81 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH-------CTTSEEEEECGCCS
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH-------cCCCEEEECChHHC
Confidence 68999999999999999999987643 45555554422 122222 36789999999999
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrf 481 (570)
.+. .|..|+..++.. ...++++|+++..+ +++.+..+.|
T Consensus 82 ~~~--------------~Q~~L~~~l~~~--------------------~~~~~RlI~ss~~~-l~~l~~~~~~ 120 (138)
T PF14532_consen 82 SPE--------------AQRRLLDLLKRQ--------------------ERSNVRLIASSSQD-LEELVEEGRF 120 (138)
T ss_dssp -HH--------------HHHHHHHHHHHC--------------------TTTTSEEEEEECC--CCCHHHHSTH
T ss_pred CHH--------------HHHHHHHHHHhc--------------------CCCCeEEEEEeCCC-HHHHhhccch
Confidence 987 899999999821 13456777776643 4444444444
No 181
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.80 E-value=2.7e-08 Score=112.90 Aligned_cols=50 Identities=40% Similarity=0.572 Sum_probs=41.8
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+.+.|+||+++++.+..++. ...+++|+||||||||++|+++++.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~----------------------------------~~~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK----------------------------------QKRNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH----------------------------------cCCCEEEECCCCCCHHHHHHHHHHH
Confidence 344559999999999998884 1258999999999999999999999
Q ss_pred hCCc
Q 008329 354 VNVP 357 (570)
Q Consensus 354 lg~~ 357 (570)
++..
T Consensus 61 l~~~ 64 (608)
T TIGR00764 61 LPDE 64 (608)
T ss_pred cCch
Confidence 8654
No 182
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.80 E-value=5.1e-08 Score=106.45 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=75.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc--EE---Eeecc------cccc---cccccchhh-HHHHHHhhhcchhHhhhc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FV---IADAT------TLTQ---AGYVGEDVE-SILYKLLTVSDYNVAAAQ 395 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~--fv---~i~~s------~l~~---~g~vGe~~~-~~lr~lf~~a~~~v~~~~ 395 (570)
++++|+||||||||++|+.+|..+... +. .+..+ ++.. ...+|.... ..+.+....+... ...
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~ 272 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEK 272 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccC
Confidence 799999999999999999999887432 11 12221 1110 111221111 1222333333211 135
Q ss_pred CeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC----eeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT----VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 396 ~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~----~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
+.||+||||++...++ +...++.+||.. ...+|-.. .......+. -..|+.||+|.|..|
T Consensus 273 ~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y--~e~d~e~f~-iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 273 KYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTY--SENDEERFY-VPENVYIIGLMNTAD 336 (459)
T ss_pred CcEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeec--ccccccccc-CCCCeEEEEecCccc
Confidence 7899999999987652 566678888721 11111000 000011122 368999999999988
Q ss_pred ----hHHHHHhccccc
Q 008329 472 ----IEKTISERRQDS 483 (570)
Q Consensus 472 ----Le~~l~~Rrfd~ 483 (570)
+-+.+.+|||.-
T Consensus 337 rs~~~lD~AlrRRF~f 352 (459)
T PRK11331 337 RSLAVVDYALRRRFSF 352 (459)
T ss_pred cchhhccHHHHhhhhe
Confidence 455556677733
No 183
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.80 E-value=6.1e-08 Score=103.21 Aligned_cols=62 Identities=24% Similarity=0.243 Sum_probs=46.7
Q ss_pred hcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 276 DKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 276 ~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
++.|+|++++++.+...+.....+. ......++|+||||+||||+|++|++.++
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~--------------------------~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGL--------------------------EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcC--------------------------CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3368999999999988775322210 01124677999999999999999999986
Q ss_pred C-------cEEEeec
Q 008329 356 V-------PFVIADA 363 (570)
Q Consensus 356 ~-------~fv~i~~ 363 (570)
. +++.+.+
T Consensus 104 ~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 104 EYSKTPEGRRYTFKW 118 (361)
T ss_pred hhcccccCceEEEEe
Confidence 5 7888877
No 184
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.78 E-value=2.6e-08 Score=108.97 Aligned_cols=85 Identities=18% Similarity=0.363 Sum_probs=52.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..--.... ..|.. ......+|+|||++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~-~~~~~-----~~~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTM-EEFKE-----KYRSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcH-HHHHH-----HHhcCCEEEEehhh
Confidence 468999999999999999999887 44567777766542 11111000000 11111 01235599999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+..+. ..++.|+.+++
T Consensus 222 ~l~~~~------------~~~~~l~~~~n 238 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFN 238 (450)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 986542 14566676665
No 185
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.76 E-value=5.7e-09 Score=110.17 Aligned_cols=200 Identities=19% Similarity=0.268 Sum_probs=100.8
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHH
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraL 350 (570)
+.+.+...|.|.+.+|..|.-.+..... .. ..+-......-|+||+|.||+|||.|.+.+
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~-------~~-------------~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~ 77 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVE-------KN-------------DPDGTRIRGNIHILLVGDPGTGKSQLLKYV 77 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--S-------CC-------------CCT-TEE--S--EEEECSCHHCHHHHHHCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhccc-------cc-------------cccccccccccceeeccchhhhHHHHHHHH
Confidence 4555666799999999877655421000 00 000001122359999999999999999988
Q ss_pred HHHhCCcEEEeecccccccccccchhhH-HHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHH
Q 008329 351 ARYVNVPFVIADATTLTQAGYVGEDVES-ILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (570)
Q Consensus 351 A~~lg~~fv~i~~s~l~~~g~vGe~~~~-~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~L 429 (570)
++.....+ .+++......|....-... .-.+..-++ ..+..+.+||++|||+|++... ..+.|
T Consensus 78 ~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~lea-Galvlad~GiccIDe~dk~~~~--------------~~~~l 141 (331)
T PF00493_consen 78 AKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEA-GALVLADGGICCIDEFDKMKED--------------DRDAL 141 (331)
T ss_dssp CCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE--HHHHCTTSEEEECTTTT--CH--------------HHHHH
T ss_pred HhhCCceE-EECCCCcccCCccceeccccccceeEEeC-CchhcccCceeeecccccccch--------------HHHHH
Confidence 87765444 3444332222221110000 000000011 1233468899999999999875 68899
Q ss_pred HHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHH
Q 008329 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (570)
Q Consensus 430 L~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~L 509 (570)
+++||...++|...| ....+.+ +..+++++|+. .++++.... ..++
T Consensus 142 ~eaMEqq~isi~kag-------i~~~l~a-r~svlaa~NP~-------~g~~~~~~~----~~~n--------------- 187 (331)
T PF00493_consen 142 HEAMEQQTISIAKAG-------IVTTLNA-RCSVLAAANPK-------FGRYDPNKS----LSEN--------------- 187 (331)
T ss_dssp HHHHHCSCEEECTSS-------SEEEEE----EEEEEE--T-------T--S-TTS-----CGCC---------------
T ss_pred HHHHHcCeeccchhh-------hcccccc-hhhhHHHHhhh-------hhhcchhhh----hHHh---------------
Confidence 999998888884333 2234433 46677888764 234432211 1111
Q ss_pred HhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 510 l~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
-.+.+.+++||+.++.+.+-..++..+.+.+
T Consensus 188 -----------i~l~~~LLSRFDLif~l~D~~d~~~D~~la~ 218 (331)
T PF00493_consen 188 -----------INLPPPLLSRFDLIFLLRDKPDEEEDERLAE 218 (331)
T ss_dssp -----------T-S-CCCHCC-SEEECC--TTT-HHHHHHHH
T ss_pred -----------cccchhhHhhcCEEEEeccccccccccccce
Confidence 1267899999999988755544444444433
No 186
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=1.1e-07 Score=100.15 Aligned_cols=61 Identities=38% Similarity=0.618 Sum_probs=45.9
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--C
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--V 356 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg--~ 356 (570)
++||.+|.++.-..+..- . .. .+..+.+|+.||||||||.||-+||+++| .
T Consensus 41 ~VGQ~~AReAaGvIv~mi-----k---~g-------------------k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 41 LVGQEEAREAAGVIVKMI-----K---QG-------------------KMAGRGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred ccchHHHHHhhhHHHHHH-----H---hC-------------------cccccEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 799999998765555310 0 00 01237899999999999999999999995 6
Q ss_pred cEEEeecccc
Q 008329 357 PFVIADATTL 366 (570)
Q Consensus 357 ~fv~i~~s~l 366 (570)
||+.++++++
T Consensus 94 PF~~isgsEi 103 (450)
T COG1224 94 PFVAISGSEI 103 (450)
T ss_pred Cceeecccee
Confidence 8888888764
No 187
>PRK06893 DNA replication initiation factor; Validated
Probab=98.75 E-value=5.4e-08 Score=97.36 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=46.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
+.++|+||||||||+|++++|+.+ +.....++..+.. ....+.+... ....+|+|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----------YFSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----------hhhHHHHhhc------ccCCEEEEeChhhh
Confidence 357899999999999999999886 2333333332211 0001111111 23469999999998
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..... .+..|+.+++
T Consensus 104 ~~~~~------------~~~~l~~l~n 118 (229)
T PRK06893 104 IGNEE------------WELAIFDLFN 118 (229)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 65421 3445777666
No 188
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.75 E-value=4e-08 Score=105.97 Aligned_cols=85 Identities=16% Similarity=0.322 Sum_probs=52.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..-....... |.. . .....+|+|||++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~-~~~---~--~~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEE-FKE---K--YRSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHH-HHH---H--HHhCCEEEEehhh
Confidence 468899999999999999999887 45677777766442 1111100000000 100 0 1234599999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+.... ..+..|+.+++
T Consensus 210 ~l~~~~------------~~~~~l~~~~n 226 (405)
T TIGR00362 210 FLAGKE------------RTQEEFFHTFN 226 (405)
T ss_pred hhcCCH------------HHHHHHHHHHH
Confidence 986542 25666777766
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.5e-07 Score=99.41 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=56.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc------------------------EEEeecccccccccccchhhHHHHHHhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~ 386 (570)
+.+||+||.|+||+++|+++|+.+.+. ++.+...+ ...++ .+.+|++...
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~I~---id~iR~l~~~ 98 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID---NKDIG---VDQVREINEK 98 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc---CCCCC---HHHHHHHHHH
Confidence 677899999999999999999988442 11121100 11122 2334554433
Q ss_pred cchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 387 a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
...........|++||++|+|... .+|+||+.||+
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE 133 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE 133 (325)
T ss_pred HhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 322222345679999999999976 89999999995
No 190
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.72 E-value=2.2e-07 Score=104.85 Aligned_cols=85 Identities=14% Similarity=0.294 Sum_probs=53.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
..++|+|++|+|||.|+++|++.+ +..++.+++.++.. .++..- .....+.|... -....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al-~~~~~~~f~~~-----y~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSI-RDGKGDSFRRR-----YREMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HhccHHHHHHH-----hhcCCEEEEehhc
Confidence 358899999999999999999876 35667777766542 122110 00001111111 1234699999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+..+.. .+..|+.+++
T Consensus 388 ~l~gke~------------tqeeLF~l~N 404 (617)
T PRK14086 388 FLEDKES------------TQEEFFHTFN 404 (617)
T ss_pred cccCCHH------------HHHHHHHHHH
Confidence 9875422 4566777776
No 191
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.1e-07 Score=98.04 Aligned_cols=87 Identities=25% Similarity=0.334 Sum_probs=55.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc---------------------EEEeecccccccccccch-----hhHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP---------------------FVIADATTLTQAGYVGED-----VESILYKLL 384 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~---------------------fv~i~~s~l~~~g~vGe~-----~~~~lr~lf 384 (570)
+.+||+||+|+||+++|.++|+.+.+. +..+.. . ....|.. ..+.++++.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~-p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---I-PNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---C-CCcccccccccccHHHHHHHH
Confidence 568899999999999999999887432 111100 0 0000100 023345444
Q ss_pred hhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 385 TVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 385 ~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+............|++|||+|+|... .+|+||+.||+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 139 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE 139 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC
Confidence 33322222245579999999999876 89999999995
No 192
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.70 E-value=8.7e-08 Score=104.67 Aligned_cols=122 Identities=21% Similarity=0.351 Sum_probs=81.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhc-----------chhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVS-----------DYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-----------~~~v~~~~~ 396 (570)
.++++.|++|||||++|+++.... +.+|+.++|+.+.+. ..-..+|... ......+.+
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~--------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD--------LIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH--------HHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 579999999999999999999876 568999999887421 1111122110 111234568
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
+.||||||+.+... +|..|++.++...+.- .+... . ...++++|++++. ++.+.+
T Consensus 234 Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~-------~~~~~--~-~~~~~rii~~~~~-~l~~~~ 288 (469)
T PRK10923 234 GTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYR-------VGGYA--P-VKVDVRIIAATHQ-NLEQRV 288 (469)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHHHhcCcEEe-------CCCCC--e-EEeeEEEEEeCCC-CHHHHH
Confidence 89999999999987 8999999998432211 01111 1 1235888888875 477777
Q ss_pred Hhccccccc
Q 008329 477 SERRQDSSI 485 (570)
Q Consensus 477 ~~Rrfd~~I 485 (570)
..+.|...+
T Consensus 289 ~~~~~~~~L 297 (469)
T PRK10923 289 QEGKFREDL 297 (469)
T ss_pred HcCCchHHH
Confidence 777665443
No 193
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.69 E-value=4.9e-08 Score=108.52 Aligned_cols=158 Identities=19% Similarity=0.299 Sum_probs=93.4
Q ss_pred HHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHH
Q 008329 270 EICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKT 349 (570)
Q Consensus 270 el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAra 349 (570)
.|...|...|.|.+.+|.-|.-.+. .+.++. ++ .++++.- .-||+++|.||+||+-+.++
T Consensus 338 ~lv~Sl~PsIyGhe~VK~GilL~Lf-------GGv~K~--a~----------eg~~lRG-Dinv~iVGDPgt~KSQfLk~ 397 (764)
T KOG0480|consen 338 NLVNSLFPSIYGHELVKAGILLSLF-------GGVHKS--AG----------EGTSLRG-DINVCIVGDPGTGKSQFLKA 397 (764)
T ss_pred HHHHhhCccccchHHHHhhHHHHHh-------CCcccc--CC----------CCccccC-CceEEEeCCCCccHHHHHHH
Confidence 3555566679999999998877663 111111 00 1222221 25999999999999999999
Q ss_pred HHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHH
Q 008329 350 LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (570)
Q Consensus 350 LA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~L 429 (570)
.+..+.+.++. .+..-..+|+.-.-+.+.....|.-....+-.+.+||..|||+|+|..+ -|.+|
T Consensus 398 v~~fsPR~vYt-sGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAi 462 (764)
T KOG0480|consen 398 VCAFSPRSVYT-SGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAI 462 (764)
T ss_pred HhccCCcceEe-cCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHH
Confidence 99988766653 3322111221110000000001110001122357899999999999865 58899
Q ss_pred HHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 430 L~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
+++||..+|+|...|... ++++ +.-||+|+|+.
T Consensus 463 hEAMEQQtISIaKAGv~a-------TLnA-RtSIlAAANPv 495 (764)
T KOG0480|consen 463 HEAMEQQTISIAKAGVVA-------TLNA-RTSILAAANPV 495 (764)
T ss_pred HHHHHhheehheecceEE-------eecc-hhhhhhhcCCc
Confidence 999999888885544333 2322 24567777765
No 194
>PRK05642 DNA replication initiation factor; Validated
Probab=98.67 E-value=1.2e-07 Score=95.42 Aligned_cols=76 Identities=28% Similarity=0.371 Sum_probs=49.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++|+||+|+|||.|++++++.+ +...+.++..++... ...+.+.+. .--+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~-------~~~~~~~~~---------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR-------GPELLDNLE---------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh-------hHHHHHhhh---------hCCEEEEechhhh
Confidence 578899999999999999998765 455666666554321 011111111 1238999999988
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..+.. .+..|+.+++
T Consensus 110 ~~~~~------------~~~~Lf~l~n 124 (234)
T PRK05642 110 AGKAD------------WEEALFHLFN 124 (234)
T ss_pred cCChH------------HHHHHHHHHH
Confidence 64421 4566777776
No 195
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.66 E-value=1.3e-07 Score=99.71 Aligned_cols=126 Identities=21% Similarity=0.405 Sum_probs=91.4
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcc------hhHhhhcCeEEE
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------YNVAAAQQGIVY 400 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~------~~v~~~~~gILf 400 (570)
..++||.|.+||||-.+|++..... ..||+.++|+.+-+. ..-.++|..++ .....+.+|.+|
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--------~aEsElFG~apg~~gk~GffE~AngGTVl 298 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--------AAESELFGHAPGDEGKKGFFEQANGGTVL 298 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--------HhHHHHhcCCCCCCCccchhhhccCCeEE
Confidence 3689999999999999999997665 679999999987641 12234443332 123446789999
Q ss_pred EcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcc
Q 008329 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (570)
Q Consensus 401 IDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rr 480 (570)
+|||..|++. .|..||+.+.+.+ .++.+....+-+ ++++||+|.. ++.+.+..+.
T Consensus 299 LDeIgEmSp~--------------lQaKLLRFL~DGt-------FRRVGee~Ev~v---dVRVIcatq~-nL~~lv~~g~ 353 (511)
T COG3283 299 LDEIGEMSPR--------------LQAKLLRFLNDGT-------FRRVGEDHEVHV---DVRVICATQV-NLVELVQKGK 353 (511)
T ss_pred eehhhhcCHH--------------HHHHHHHHhcCCc-------eeecCCcceEEE---EEEEEecccc-cHHHHHhcCc
Confidence 9999999987 9999999997432 222223333333 4899998765 5899999998
Q ss_pred cccccccC
Q 008329 481 QDSSIGFG 488 (570)
Q Consensus 481 fd~~I~f~ 488 (570)
|...+.|.
T Consensus 354 fReDLfyR 361 (511)
T COG3283 354 FREDLFYR 361 (511)
T ss_pred hHHHHHHH
Confidence 88777664
No 196
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.65 E-value=7e-08 Score=108.04 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=114.6
Q ss_pred hhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 274 GLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 274 ~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+...|.|.|.+|+.|.-.+. ...++. ...++- -...-|+||+|.||||||.+.+.+++.
T Consensus 426 SiAPsIye~edvKkglLLqLf-------GGt~k~--~~~~~~-----------~R~~INILL~GDPGtsKSqlLqyv~~l 485 (804)
T KOG0478|consen 426 SIAPSIYELEDVKKGLLLQLF-------GGTRKE--DEKSGR-----------FRGDINILLVGDPGTSKSQLLQYCHRL 485 (804)
T ss_pred hhchhhhcccchhhhHHHHHh-------cCCccc--cccccc-----------ccccceEEEecCCCcCHHHHHHHHHHh
Confidence 344568888888887776663 111111 000000 011248999999999999999999999
Q ss_pred hCCcEEEeecccccc---cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHH
Q 008329 354 VNVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (570)
Q Consensus 354 lg~~fv~i~~s~l~~---~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL 430 (570)
+.+-.+. ++..-.+ ..|+-.+. .-+++..+.. .+-.+.+||..|||+|+|..+ .++.|+
T Consensus 486 ~pRg~yT-SGkGsSavGLTayVtrd~--dtkqlVLesG-ALVLSD~GiCCIDEFDKM~dS--------------trSvLh 547 (804)
T KOG0478|consen 486 LPRGVYT-SGKGSSAVGLTAYVTKDP--DTRQLVLESG-ALVLSDNGICCIDEFDKMSDS--------------TRSVLH 547 (804)
T ss_pred CCcceee-cCCccchhcceeeEEecC--ccceeeeecC-cEEEcCCceEEchhhhhhhHH--------------HHHHHH
Confidence 8654442 2211000 11222210 1112222211 222357899999999999876 788999
Q ss_pred HHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHH
Q 008329 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (570)
Q Consensus 431 ~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll 510 (570)
++||..+++|+..|... .+++. .-++++.|+.. .......+..+|
T Consensus 548 EvMEQQTvSIAKAGII~-------sLNAR-~SVLAaANP~~-----------skynp~k~i~eN---------------- 592 (804)
T KOG0478|consen 548 EVMEQQTLSIAKAGIIA-------SLNAR-CSVLAAANPIR-----------SKYNPNKSIIEN---------------- 592 (804)
T ss_pred HHHHHhhhhHhhcceee-------ecccc-ceeeeeecccc-----------ccCCCCCchhhc----------------
Confidence 99998888886555333 33333 45666666532 122222222222
Q ss_pred hhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 511 ~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
-.+.|.|++||+.+.-+.+-..+...+-|+.+.
T Consensus 593 ----------I~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 593 ----------INLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred ----------cCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 138899999999988776655555555555443
No 197
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.4e-07 Score=98.14 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=46.8
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc-
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~- 357 (570)
+.+.++.++.|...+...... -.+.+++++||||||||.+++.+++++..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----------------------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~ 70 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----------------------------ERPSNIIIYGPTGTGKTATVKFVMEELEESS 70 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----------------------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhh
Confidence 677898899888877522221 123579999999999999999999888433
Q ss_pred ----EEEeecccccc
Q 008329 358 ----FVIADATTLTQ 368 (570)
Q Consensus 358 ----fv~i~~s~l~~ 368 (570)
++.++|..+..
T Consensus 71 ~~~~~~yINc~~~~t 85 (366)
T COG1474 71 ANVEVVYINCLELRT 85 (366)
T ss_pred ccCceEEEeeeeCCC
Confidence 78899977553
No 198
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.1e-08 Score=107.91 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=98.9
Q ss_pred cccccCCcEEEECCCCCchHHHHHHHHHHhC----CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEE
Q 008329 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVY 400 (570)
Q Consensus 325 s~~i~~~~vLL~GPPGTGKTtLAraLA~~lg----~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILf 400 (570)
+.-+..+++||.||+|+|||.|+++++.++. +.+..++|+.+.... -+.+.+.+...|..+-+ ..|+||+
T Consensus 426 spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~----~~PSiIv 499 (952)
T KOG0735|consen 426 SPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALW----YAPSIIV 499 (952)
T ss_pred ccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHh----hCCcEEE
Confidence 3345678999999999999999999999984 345678898876432 23334556666666544 6899999
Q ss_pred EcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-h-HHHHHh
Q 008329 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-I-EKTISE 478 (570)
Q Consensus 401 IDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-L-e~~l~~ 478 (570)
+|++|.+....+..+...++..++....|.+++..+. -+.+.+.+|+++..-. + .-+...
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------------~~~~~ia~Iat~qe~qtl~~~L~s~ 561 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------------KRNRKIAVIATGQELQTLNPLLVSP 561 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------------ccCcEEEEEEechhhhhcChhhcCc
Confidence 9999999985444444555555555555556665211 0122367888877544 2 223346
Q ss_pred cccccccccCchhhhh
Q 008329 479 RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 479 Rrfd~~I~f~~p~~e~ 494 (570)
++|+..+..+.|..+.
T Consensus 562 ~~Fq~~~~L~ap~~~~ 577 (952)
T KOG0735|consen 562 LLFQIVIALPAPAVTR 577 (952)
T ss_pred cceEEEEecCCcchhH
Confidence 6888888888887765
No 199
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.65 E-value=5.7e-08 Score=110.54 Aligned_cols=200 Identities=18% Similarity=0.225 Sum_probs=113.9
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHH
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraL 350 (570)
+.+.+...|.|.+.+|+.|.-++.--..... +++..+ ...-|+||+|.||||||.|.+.+
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~--------------~~g~~i------RGDInILLvGDPgtaKSqlLk~v 339 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGGVKKNL--------------PDGTRI------RGDIHILLVGDPGTAKSQLLKYV 339 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCCCcccC--------------CCCccc------ccceeEEEcCCCchhHHHHHHHH
Confidence 3334455689999999988877641111000 000001 11258999999999999999999
Q ss_pred HHHhCCcEEEeecccccccccccchhhHHH-HHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHH
Q 008329 351 ARYVNVPFVIADATTLTQAGYVGEDVESIL-YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (570)
Q Consensus 351 A~~lg~~fv~i~~s~l~~~g~vGe~~~~~l-r~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~L 429 (570)
++.+.+.++. ++......|....-..... -+..-++ ..+..+.+||+.|||+|+|... ...+|
T Consensus 340 ~~~aPr~vyt-sgkgss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm~~~--------------dr~ai 403 (682)
T COG1241 340 AKLAPRGVYT-SGKGSSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKMNEE--------------DRVAI 403 (682)
T ss_pred HhhCCceEEE-ccccccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCCChH--------------HHHHH
Confidence 9988655442 2221111111100000000 0100011 1223467899999999999865 78899
Q ss_pred HHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHH
Q 008329 430 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSL 509 (570)
Q Consensus 430 L~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~L 509 (570)
.++||..+|+|...|.. ..-...+-+++|+|+. .+||+... +..++
T Consensus 404 hEaMEQQtIsIaKAGI~--------atLnARcsvLAAaNP~-------~Gryd~~~----~~~en--------------- 449 (682)
T COG1241 404 HEAMEQQTISIAKAGIT--------ATLNARCSVLAAANPK-------FGRYDPKK----TVAEN--------------- 449 (682)
T ss_pred HHHHHhcEeeeccccee--------eecchhhhhhhhhCCC-------CCcCCCCC----CHHHh---------------
Confidence 99999888888443311 2223345677777764 23443321 11111
Q ss_pred HhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 510 METVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 510 l~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
-.+.+.+++||+.++.+.+-..++-.+.+.+
T Consensus 450 -----------I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 450 -----------INLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred -----------cCCChhHHhhCCeeEEecCCCCccchHHHHH
Confidence 1378899999999998766544443333333
No 200
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.64 E-value=8.5e-08 Score=108.29 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=71.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC--cEEEeecccccccccccc-hhhHHHHHHhh-hcchhHhhhcCeEEEEcchhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQAGYVGE-DVESILYKLLT-VSDYNVAAAQQGIVYIDEVDK 406 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~l~~~g~vGe-~~~~~lr~lf~-~a~~~v~~~~~gILfIDEID~ 406 (570)
++|+|.|+.||+||+++++++..+.. ||+.+..+.-. ..++|. +++..++.--. ..+..+..+.++|||+||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 78999999999999999999999854 78766544322 345554 23333322221 223456667899999999999
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecC
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPE 442 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe 442 (570)
+.+. +++.|++.||...|+|--
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR 126 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLER 126 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEE
Confidence 9887 999999999988777733
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.1e-07 Score=98.95 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=23.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
+.+||+||+|+||+++|+.+|+.+.+
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 67889999999999999999998855
No 202
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.64 E-value=4.4e-07 Score=93.90 Aligned_cols=148 Identities=24% Similarity=0.299 Sum_probs=90.9
Q ss_pred CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEE-EECCCCCchH
Q 008329 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL-LMGPTGSGKT 344 (570)
Q Consensus 266 ~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vL-L~GPPGTGKT 344 (570)
.....+...|+..+.||.-|++.+..++..|+..-. + .++-+| |+|++||||.
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~-------------p-------------~KPLvLSfHG~tGTGKN 124 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN-------------P-------------RKPLVLSFHGWTGTGKN 124 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC-------------C-------------CCCeEEEecCCCCCchh
Confidence 346778999999999999999999999976665311 0 113344 9999999999
Q ss_pred HHHHHHHHHhC-----CcEEE--eecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 345 LLAKTLARYVN-----VPFVI--ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 345 tLAraLA~~lg-----~~fv~--i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
.+++.||+.+- .+++. +.-..+-...++ +..-.++-..-...+...+.++.++||+|+|.+.
T Consensus 125 ~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i----e~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g------- 193 (344)
T KOG2170|consen 125 YVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI----EDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG------- 193 (344)
T ss_pred HHHHHHHHHHHhccccchhHHHhhhhccCCChHHH----HHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh-------
Confidence 99999998762 12211 000001101111 1111111111222344567889999999999876
Q ss_pred CCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
+.++|-..+|-.. ...-++..+.+||+-+|...
T Consensus 194 -------Lld~lkpfLdyyp--------------~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 194 -------LLDVLKPFLDYYP--------------QVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred -------HHHHHhhhhcccc--------------ccccccccceEEEEEcCCcc
Confidence 7777777777210 00124566778888766544
No 203
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.63 E-value=5.2e-07 Score=90.99 Aligned_cols=173 Identities=21% Similarity=0.321 Sum_probs=111.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|-+.+++.|.+-......+ .+..+|||+|.-|||||+|++|+-.++
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G----------------------------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG----------------------------LPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC----------------------------CcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3799999999888766422221 234799999999999999999998777
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+..+++++..++.. -..+.+.+... ..+-|||+|+. +-+ .++..-..|-.+||
T Consensus 113 glrLVEV~k~dl~~--------Lp~l~~~Lr~~------~~kFIlFcDDL---SFe----------~gd~~yK~LKs~Le 165 (287)
T COG2607 113 GLRLVEVDKEDLAT--------LPDLVELLRAR------PEKFILFCDDL---SFE----------EGDDAYKALKSALE 165 (287)
T ss_pred CCeEEEEcHHHHhh--------HHHHHHHHhcC------CceEEEEecCC---CCC----------CCchHHHHHHHHhc
Confidence 56688888877653 12222232222 24569999973 211 12235677888999
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCCh-HHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDI-EKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dL-e~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
|.. .-...||+|-+|+|...+ .+.+. ...++. +.+
T Consensus 166 G~v-----------------e~rP~NVl~YATSNRRHLl~e~~~-----dn~~~~----------------------~ei 201 (287)
T COG2607 166 GGV-----------------EGRPANVLFYATSNRRHLLPEDMK-----DNEGST----------------------GEI 201 (287)
T ss_pred CCc-----------------ccCCCeEEEEEecCCcccccHhhh-----hCCCcc----------------------ccc
Confidence 753 123678999999987652 21221 111111 112
Q ss_pred ChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 514 ESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 514 ~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
.+.|..+. +-.|-.||+.++.|.+.+.++..+|+..
T Consensus 202 h~~eaveE--KlSlSDRFGLwL~F~~~~Q~~YL~~V~~ 237 (287)
T COG2607 202 HPSEAVEE--KLSLSDRFGLWLSFYPCDQDEYLKIVDH 237 (287)
T ss_pred ChhHHHHH--hhchhhhcceeecccCCCHHHHHHHHHH
Confidence 22222221 1356789999999999999999999985
No 204
>PRK15115 response regulator GlrR; Provisional
Probab=98.63 E-value=1.9e-07 Score=101.21 Aligned_cols=124 Identities=20% Similarity=0.358 Sum_probs=84.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhc-----------chhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVS-----------DYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-----------~~~v~~~~~ 396 (570)
.++++.|++|||||++|+++.... +.+|+.++|..+.+. .+ -..+|... ......+.+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~-~~-------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ-LL-------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH-HH-------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 578999999999999999998875 578999999886531 11 11122111 111234567
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
++||||||+.|... +|..|++.|+...+.- .+... . ...++++|++++. ++++.+
T Consensus 230 gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~-------~g~~~--~-~~~~~rii~~~~~-~l~~~~ 284 (444)
T PRK15115 230 GTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRP-------LGSNR--D-IDIDVRIISATHR-DLPKAM 284 (444)
T ss_pred CEEEEEccccCCHH--------------HHHHHHHHHhhCCEEe-------CCCCc--e-eeeeEEEEEeCCC-CHHHHH
Confidence 89999999999987 8999999998432210 11111 1 1335889988886 488888
Q ss_pred Hhccccccccc
Q 008329 477 SERRQDSSIGF 487 (570)
Q Consensus 477 ~~Rrfd~~I~f 487 (570)
.+++|...+.|
T Consensus 285 ~~~~f~~~l~~ 295 (444)
T PRK15115 285 ARGEFREDLYY 295 (444)
T ss_pred HcCCccHHHHH
Confidence 88888666554
No 205
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.61 E-value=1e-07 Score=103.39 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=82.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhc-----------chhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVS-----------DYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-----------~~~v~~~~~ 396 (570)
.++++.|++||||+++|+++.... +.+|+.++|..+.+. . .-..+|... ......+.+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~-~-------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES-L-------LESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH-H-------HHHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 689999999999999999998764 578999999887531 1 111111110 111223567
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
++||||||+.+... +|..|+..++...+.- .+... . ...++++|++++. ++++.+
T Consensus 239 gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~-------~~~~~--~-~~~~~rii~~t~~-~l~~~~ 293 (457)
T PRK11361 239 GTLLLDEIGEMPLV--------------LQAKLLRILQEREFER-------IGGHQ--T-IKVDIRIIAATNR-DLQAMV 293 (457)
T ss_pred CEEEEechhhCCHH--------------HHHHHHHHHhcCcEEe-------CCCCc--e-eeeceEEEEeCCC-CHHHHH
Confidence 89999999999987 8999999998532211 11111 1 1345888888875 577777
Q ss_pred Hhcccccccc
Q 008329 477 SERRQDSSIG 486 (570)
Q Consensus 477 ~~Rrfd~~I~ 486 (570)
.+++|...+.
T Consensus 294 ~~g~~~~~l~ 303 (457)
T PRK11361 294 KEGTFREDLF 303 (457)
T ss_pred HcCCchHHHH
Confidence 7777766443
No 206
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.61 E-value=2.1e-07 Score=92.78 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=52.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccc---hhhHHHHHHhhhcchhHhhhcCeEEEEc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGE---DVESILYKLLTVSDYNVAAAQQGIVYID 402 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe---~~~~~lr~lf~~a~~~v~~~~~gILfID 402 (570)
..++|+||+|+|||.|.+++++.+ +..++.+++.++... ++.. .....+.+.+ ..--+|+||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~~~---------~~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKDRL---------RSADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHHHH---------CTSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhhhh---------hcCCEEEEe
Confidence 457899999999999999999775 455666766554320 1000 0001111111 233599999
Q ss_pred chhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 403 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 403 EID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+++.+..+. ..|..|..+++
T Consensus 105 Di~~l~~~~------------~~q~~lf~l~n 124 (219)
T PF00308_consen 105 DIQFLAGKQ------------RTQEELFHLFN 124 (219)
T ss_dssp TGGGGTTHH------------HHHHHHHHHHH
T ss_pred cchhhcCch------------HHHHHHHHHHH
Confidence 999997652 26777888877
No 207
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.60 E-value=2.2e-07 Score=101.76 Aligned_cols=86 Identities=22% Similarity=0.386 Sum_probs=50.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .++..-......+ |... ......+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-~~~~~~~~~~~~~-f~~~----~~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSMKEGKLNE-FREK----YRKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHhcccHHH-HHHH----HHhcCCEEEEechh
Confidence 468999999999999999999876 34566666655432 1110000000011 1100 01245699999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+.... ..+..|+..++
T Consensus 205 ~l~~~~------------~~q~elf~~~n 221 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFN 221 (440)
T ss_pred hhcCcH------------HHHHHHHHHHH
Confidence 886431 14555666665
No 208
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.60 E-value=3e-07 Score=99.66 Aligned_cols=121 Identities=21% Similarity=0.420 Sum_probs=81.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhh-------c----chhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTV-------S----DYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~-------a----~~~v~~~~~ 396 (570)
.++++.|++||||+++|+++.... +.+|+.++|+.+.+. .+ -..+|.. + ...+..+.+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~-~~-------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN-LL-------ESELFGYEKGAFTGAVKQTLGKIEYAHG 234 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH-HH-------HHHhcCCCCCCcCCCccCCCCceeECCC
Confidence 689999999999999999998775 468999999886421 11 1112211 0 111234578
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTI 476 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l 476 (570)
++||||||+.|... +|..|++.++...+.- .+... . ...++++|++++. ++++.+
T Consensus 235 gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~-------~~~~~--~-~~~~~rii~~~~~-~l~~~~ 289 (445)
T TIGR02915 235 GTLFLDEIGDLPLN--------------LQAKLLRFLQERVIER-------LGGRE--E-IPVDVRIVCATNQ-DLKRMI 289 (445)
T ss_pred CEEEEechhhCCHH--------------HHHHHHHHHhhCeEEe-------CCCCc--e-eeeceEEEEecCC-CHHHHH
Confidence 99999999999987 9999999998533211 01111 1 1235888888875 467777
Q ss_pred Hhcccccc
Q 008329 477 SERRQDSS 484 (570)
Q Consensus 477 ~~Rrfd~~ 484 (570)
..+.|...
T Consensus 290 ~~~~~~~~ 297 (445)
T TIGR02915 290 AEGTFRED 297 (445)
T ss_pred HcCCccHH
Confidence 66666553
No 209
>PRK04132 replication factor C small subunit; Provisional
Probab=98.59 E-value=1.8e-07 Score=109.14 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=68.4
Q ss_pred cCCcEEEEC--CCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcch--hHhhhcCeEE
Q 008329 329 EKSNILLMG--PTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--NVAAAQQGIV 399 (570)
Q Consensus 329 ~~~~vLL~G--PPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~--~v~~~~~gIL 399 (570)
+.-+-+..| |.+.||||+|+++|+.+ +.+++++++++... .+.+++....... .+......|+
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 334556678 99999999999999997 45789999987431 1233333322110 0111134699
Q ss_pred EEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 400 fIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
+|||+|.|... .|++|++.||. ...+++||+++|...
T Consensus 635 IIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~~ 671 (846)
T PRK04132 635 FLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYSS 671 (846)
T ss_pred EEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCChh
Confidence 99999999876 89999999994 134567777777644
No 210
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=8.8e-07 Score=93.35 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=72.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc-----------------------EEEeecccccccccccchhhHHHHHHhhhc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP-----------------------FVIADATTLTQAGYVGEDVESILYKLLTVS 387 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~-----------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a 387 (570)
+.+||.||.|+||+++|+.+|+.+.+. ++.+....- .+.++ .+.++++....
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~---vdqiR~l~~~~ 100 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE--GKSIT---VEQIRQCNRLA 100 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC--CCcCC---HHHHHHHHHHH
Confidence 678899999999999999999887432 222211100 01122 12344443322
Q ss_pred chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecC
Q 008329 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (570)
Q Consensus 388 ~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~ag 467 (570)
......+...|++||++|+|... .+|+||+.+|+ ...+++||..+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~t 145 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLEE---------------------PAPNCLFLLVT 145 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEE
Confidence 21122345679999999999876 89999999995 13445666655
Q ss_pred CCC-ChHHHHHhcccccccccCchhh
Q 008329 468 AFV-DIEKTISERRQDSSIGFGAPVR 492 (570)
Q Consensus 468 n~~-dLe~~l~~Rrfd~~I~f~~p~~ 492 (570)
+.. .+.+.++.|-. .+.|+.|+.
T Consensus 146 ~~~~~lLpTI~SRCq--~~~~~~~~~ 169 (319)
T PRK06090 146 HNQKRLLPTIVSRCQ--QWVVTPPST 169 (319)
T ss_pred CChhhChHHHHhcce--eEeCCCCCH
Confidence 443 45556655533 344555543
No 211
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.58 E-value=2.9e-07 Score=100.21 Aligned_cols=127 Identities=19% Similarity=0.321 Sum_probs=79.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc----ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDE 403 (570)
.++++.|++||||+++|+++.... +.+|+.++|..+.+. ...|.. ...+.............+.+++|||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 578999999999999999998775 568999999886421 011110 000000000000112235689999999
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccc
Q 008329 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (570)
Q Consensus 404 ID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~ 483 (570)
|+.+... +|..|+++++...+.- .+... . ...++.+|++++. ++++.+..+.|..
T Consensus 237 i~~l~~~--------------~q~~ll~~l~~~~~~~-------~~~~~--~-~~~~~rii~~~~~-~l~~~~~~~~f~~ 291 (463)
T TIGR01818 237 IGDMPLD--------------AQTRLLRVLADGEFYR-------VGGRT--P-IKVDVRIVAATHQ-NLEALVRQGKFRE 291 (463)
T ss_pred hhhCCHH--------------HHHHHHHHHhcCcEEE-------CCCCc--e-eeeeeEEEEeCCC-CHHHHHHcCCcHH
Confidence 9999887 8999999998432211 01111 1 1235778888765 4777777776654
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=6.9e-07 Score=94.70 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=74.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc------------------------EEEeecccccccccccchhhHHHHHHhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~ 386 (570)
+.+||+||+|+||+++|+++|+.+.+. +..+....- ...++- +.+|++...
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~~~I~i---dqiR~l~~~ 99 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--KSSLGV---DAVREVTEK 99 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--cccCCH---HHHHHHHHH
Confidence 678899999999999999999988431 111211000 011222 234444333
Q ss_pred cchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEec
Q 008329 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICG 466 (570)
Q Consensus 387 a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~a 466 (570)
.......+...|++||++|+|... .+|+||+.||+ ...+++||..
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE---------------------Pp~~t~fiL~ 144 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE---------------------PPENTWFFLA 144 (334)
T ss_pred HhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEE
Confidence 222222356679999999999977 89999999995 1334566665
Q ss_pred CCCC-ChHHHHHhcccccccccCchhhh
Q 008329 467 GAFV-DIEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 467 gn~~-dLe~~l~~Rrfd~~I~f~~p~~e 493 (570)
+... .+...++.|-. .+.|+.|..+
T Consensus 145 t~~~~~lLpTIrSRCq--~~~~~~~~~~ 170 (334)
T PRK07993 145 CREPARLLATLRSRCR--LHYLAPPPEQ 170 (334)
T ss_pred ECChhhChHHHHhccc--cccCCCCCHH
Confidence 5544 36666665544 3556555443
No 213
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.56 E-value=2.1e-07 Score=102.11 Aligned_cols=85 Identities=19% Similarity=0.323 Sum_probs=51.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++|+||+|+|||+|++++++.+ +..++.+++.++.. .++.. +...-.+.|... .....+|+|||++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~-l~~~~~~~f~~~-----~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSA-IRSGEMQRFRQF-----YRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHH-HhcchHHHHHHH-----cccCCEEEEcchhhh
Confidence 468999999999999999999876 56666666654431 11100 000000011110 124569999999998
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..+. ..++.|+.+++
T Consensus 215 ~~k~------------~~qeelf~l~N 229 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFN 229 (445)
T ss_pred cCCh------------hhHHHHHHHHH
Confidence 6531 14566666665
No 214
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.54 E-value=3.6e-07 Score=104.16 Aligned_cols=45 Identities=36% Similarity=0.654 Sum_probs=38.4
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.|+||+++++.|..++. ...+++|+||||||||++|+++++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~----------------------------------~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAK----------------------------------QRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred HHcCChHHHHHHHHHHHH----------------------------------hCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 348999999999988774 125799999999999999999998774
No 215
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.48 E-value=6.9e-07 Score=98.24 Aligned_cols=87 Identities=17% Similarity=0.324 Sum_probs=51.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
.+++|+|++|+|||+|++++++.+ +..++.+++.++.. .++.. +... .+.+..... ......+|+|||++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~-l~~~-~~~~~~~~~--~~~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDI-LQKT-HKEIEQFKN--EICQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHH-HHHh-hhHHHHHHH--HhccCCEEEEeccc
Confidence 468899999999999999999865 34566666655442 11111 0000 000111000 01234599999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+..+. ..+..|..+++
T Consensus 217 ~l~~k~------------~~~e~lf~l~N 233 (450)
T PRK14087 217 FLSYKE------------KTNEIFFTIFN 233 (450)
T ss_pred cccCCH------------HHHHHHHHHHH
Confidence 986432 25666766666
No 216
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.47 E-value=2.6e-07 Score=103.25 Aligned_cols=133 Identities=22% Similarity=0.358 Sum_probs=93.6
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHh--CCcEEEeecccccc----cccccchhhHHHHHHhhh-cchhHhhhcCeEEEE
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYV--NVPFVIADATTLTQ----AGYVGEDVESILYKLLTV-SDYNVAAAQQGIVYI 401 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~l--g~~fv~i~~s~l~~----~g~vGe~~~~~lr~lf~~-a~~~v~~~~~gILfI 401 (570)
..-++++.|.|||||-.+||++.... ..||+.++|..+.+ +.+.|.. .......+.+ ....+..+.++.+|+
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~-~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYV-AGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccC-ccccccchhccccccceecCCCccHH
Confidence 34689999999999999999997554 67999999987653 2233332 1111111111 112344578899999
Q ss_pred cchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccc
Q 008329 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (570)
Q Consensus 402 DEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrf 481 (570)
|||..|.-. +|..||+++++..|+= .+... +.+| +.+|++|+. |+...++.++|
T Consensus 414 deIgd~p~~--------------~Qs~LLrVl~e~~v~p-------~g~~~-~~vd---irvi~ath~-dl~~lv~~g~f 467 (606)
T COG3284 414 DEIGDMPLA--------------LQSRLLRVLQEGVVTP-------LGGTR-IKVD---IRVIAATHR-DLAQLVEQGRF 467 (606)
T ss_pred HHhhhchHH--------------HHHHHHHHHhhCceec-------cCCcc-eeEE---EEEEeccCc-CHHHHHHcCCc
Confidence 999999876 9999999998544321 12222 4566 888988875 59999999999
Q ss_pred ccccccC
Q 008329 482 DSSIGFG 488 (570)
Q Consensus 482 d~~I~f~ 488 (570)
...++|-
T Consensus 468 redLyyr 474 (606)
T COG3284 468 REDLYYR 474 (606)
T ss_pred hHHHHHH
Confidence 9988874
No 217
>PRK12377 putative replication protein; Provisional
Probab=98.47 E-value=3.9e-07 Score=92.81 Aligned_cols=83 Identities=14% Similarity=0.286 Sum_probs=52.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhc----chhHhhhcCeEEEEcc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVS----DYNVAAAQQGIVYIDE 403 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a----~~~v~~~~~gILfIDE 403 (570)
.+++|+||||||||+||.+|++.+ +..++.++..++.. .+...+... ...-......+|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~----------~l~~~~~~~~~~~~~l~~l~~~dLLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS----------RLHESYDNGQSGEKFLQELCKVDLLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH----------HHHHHHhccchHHHHHHHhcCCCEEEEcC
Confidence 578999999999999999999887 55566666655442 011111000 0000113456999999
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 404 VDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 404 ID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+...... +..++.|.++++.
T Consensus 172 lg~~~~s------------~~~~~~l~~ii~~ 191 (248)
T PRK12377 172 IGIQRET------------KNEQVVLNQIIDR 191 (248)
T ss_pred CCCCCCC------------HHHHHHHHHHHHH
Confidence 9665322 1267789999984
No 218
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=9.5e-07 Score=93.29 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=58.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc-------------------------EEEeecccc-cccc----cccchhhHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP-------------------------FVIADATTL-TQAG----YVGEDVESIL 380 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~-------------------------fv~i~~s~l-~~~g----~vGe~~~~~l 380 (570)
+.+||+||+|+|||++|+.+|+.+.+. ++.+....- .+.+ .++ .+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~---id~i 98 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK---IDAV 98 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC---HHHH
Confidence 578899999999999999999987431 333332110 0000 111 2345
Q ss_pred HHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 381 YKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 381 r~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
|++..............|++||+++.+.+. .++.|++.||.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEe 139 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEE 139 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHh
Confidence 555444433223356679999999999887 89999999994
No 219
>PRK06620 hypothetical protein; Validated
Probab=98.44 E-value=2.1e-06 Score=85.43 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
..++|+||||+|||+|++++++..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 46889999999999999999987764
No 220
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=100.00 Aligned_cols=136 Identities=13% Similarity=0.244 Sum_probs=94.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
..+||+|+||||||++++++|++++.++++++|.++... -.+.+ +..+...|..++. ..++|||+-.+|.+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~~-etkl~~~f~~a~~----~~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASHT-ETKLQAIFSRARR----CSPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccchh-HHHHHHHHHHHhh----cCceEEEEeccceeeec
Confidence 478899999999999999999999999999999998742 22322 5566777777653 58999999999998744
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCch
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAP 490 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p 490 (570)
.+. + ...+++..+...|+.. . .......+++|++++..+--...-++.|-..|.++.+
T Consensus 506 ~dg---g---ed~rl~~~i~~~ls~e------~----------~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~l 563 (953)
T KOG0736|consen 506 QDG---G---EDARLLKVIRHLLSNE------D----------FKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPAL 563 (953)
T ss_pred CCC---c---hhHHHHHHHHHHHhcc------c----------ccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCC
Confidence 221 1 1234566666666510 0 1224556888888887763333445667778888887
Q ss_pred hhhh
Q 008329 491 VRAN 494 (570)
Q Consensus 491 ~~e~ 494 (570)
+.+.
T Consensus 564 se~q 567 (953)
T KOG0736|consen 564 SEEQ 567 (953)
T ss_pred CHHH
Confidence 7654
No 221
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.42 E-value=3.6e-06 Score=87.09 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=28.6
Q ss_pred hcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 520 AYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 520 ~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
-.|+.+++++|+ .++....++++++++|+....
T Consensus 348 PhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra 380 (456)
T KOG1942|consen 348 PHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRA 380 (456)
T ss_pred CCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHH
Confidence 357899999999 778889999999999998754
No 222
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.4e-06 Score=99.34 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=40.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCc-EEEECCCCCchHHHHHHHHHHhCC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~-vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
.|+|+++.++.|..++.... +...++. ++|+||||||||++++++|+.++.
T Consensus 85 el~~~~~ki~~l~~~l~~~~----------------------------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~ 136 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQV----------------------------LENAPKRILLITGPSGCGKSTTIKILSKELGI 136 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcc----------------------------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 48999999999888874211 1112233 779999999999999999998876
Q ss_pred cEE
Q 008329 357 PFV 359 (570)
Q Consensus 357 ~fv 359 (570)
.+.
T Consensus 137 ~~~ 139 (637)
T TIGR00602 137 QVQ 139 (637)
T ss_pred HHH
Confidence 543
No 223
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.37 E-value=4e-07 Score=94.85 Aligned_cols=101 Identities=26% Similarity=0.311 Sum_probs=66.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc------EEEeecccccccccccchhhHHHHHHhhhcch-hHhh--hcCeEEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP------FVIADATTLTQAGYVGEDVESILYKLLTVSDY-NVAA--AQQGIVYI 401 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~-~v~~--~~~gILfI 401 (570)
.|+|++||||+|||+...+.|+.+-++ +.++++++- .|-++.+.-.+.|..... .+.+ +....+++
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-----rgid~vr~qi~~fast~~~~~fst~~~fKlvIL 137 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL 137 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc-----cCCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence 499999999999999999999988553 122333332 222222222333333321 1111 25678999
Q ss_pred cchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 402 DEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
||+|++..+ +|++|.+.++.. +.|++|+.-+|+..
T Consensus 138 DEADaMT~~--------------AQnALRRviek~---------------------t~n~rF~ii~n~~~ 172 (360)
T KOG0990|consen 138 DEADAMTRD--------------AQNALRRVIEKY---------------------TANTRFATISNPPQ 172 (360)
T ss_pred cchhHhhHH--------------HHHHHHHHHHHh---------------------ccceEEEEeccChh
Confidence 999999977 999999988842 55666666667654
No 224
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.37 E-value=9.4e-07 Score=105.54 Aligned_cols=155 Identities=22% Similarity=0.245 Sum_probs=108.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccc-cccccchhhHH--HHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESI--LYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~-~g~vGe~~~~~--lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
+++||.|.||+|||+|..++|+..|..+++++.++-++ .+..|.++--. -.=.+..+++..++..++-|++||+.-.
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 58999999999999999999999999999999887433 22344331000 0012334555666778899999999988
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHcC-CeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIG 486 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LEg-~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~ 486 (570)
..+ +...|...+|- ....|||-...+. ...|.++.+|-|+-+-
T Consensus 1624 SQS--------------VlEGLNacLDhR~eayIPEld~~f~--------~HpnfrVFAaqNPq~q-------------- 1667 (4600)
T COG5271 1624 SQS--------------VLEGLNACLDHRREAYIPELDKTFD--------VHPNFRVFAAQNPQDQ-------------- 1667 (4600)
T ss_pred HHH--------------HHHHHHHHHhhccccccccccceee--------ccCCeeeeeecCchhc--------------
Confidence 766 88999999983 2334444332222 2556777776664320
Q ss_pred cCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 487 FGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 487 f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
.. -+.|+...|++||. +|..+.++.+|+..|.+..
T Consensus 1668 ------gg------------------------GRKgLPkSF~nRFs-vV~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1668 ------GG------------------------GRKGLPKSFLNRFS-VVKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred ------CC------------------------CcccCCHHHhhhhh-eEEecccccchHHHHHHhh
Confidence 00 12368899999995 5678999999999998753
No 225
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36 E-value=1e-05 Score=81.62 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.++|+||+|+||||+++.+++.+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4577999999999999999999875
No 226
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.31 E-value=4.3e-06 Score=90.31 Aligned_cols=122 Identities=20% Similarity=0.367 Sum_probs=81.2
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhc-----------chhHhhhc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVS-----------DYNVAAAQ 395 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-----------~~~v~~~~ 395 (570)
...++++|++||||+++|+++.... +.+|+.++|+.+.+. .+. ..+|... ...+..+.
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~-~~~-------~~lfg~~~~~~~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES-LLE-------SELFGHEKGAFTGADKRREGRFVEAD 233 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH-HHH-------HHhcCCCCCCcCCCCcCCCCceeECC
Confidence 3688999999999999999998665 578999999876521 111 1112110 01123456
Q ss_pred CeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHH
Q 008329 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT 475 (570)
Q Consensus 396 ~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~ 475 (570)
+|+||||||+.|.+. +|..|+..++...+.- .+... . ...++++|++++. ++.+.
T Consensus 234 ~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~-------~~~~~--~-~~~~~rii~~t~~-~~~~~ 288 (441)
T PRK10365 234 GGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQR-------VGSNQ--T-ISVDVRLIAATHR-DLAAE 288 (441)
T ss_pred CCEEEEeccccCCHH--------------HHHHHHHHHccCcEEe-------CCCCc--e-eeeceEEEEeCCC-CHHHH
Confidence 899999999999987 8999999998533211 11111 1 1235778888775 46777
Q ss_pred HHhcccccc
Q 008329 476 ISERRQDSS 484 (570)
Q Consensus 476 l~~Rrfd~~ 484 (570)
+..++|...
T Consensus 289 ~~~~~~~~~ 297 (441)
T PRK10365 289 VNAGRFRQD 297 (441)
T ss_pred HHcCCchHH
Confidence 777777553
No 227
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.30 E-value=5.2e-07 Score=100.30 Aligned_cols=185 Identities=19% Similarity=0.341 Sum_probs=108.6
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCccc-ccCCcEEEECCCCCchHHHHHH
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKT 349 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~-i~~~~vLL~GPPGTGKTtLAra 349 (570)
+...+...|.|.+.+|+++..++.---.+ .+.+ ... ...-++||+|.|||||+...+.
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGGv~k--------n~~~-------------khkvRGDinvLL~GDPGTaKSQFLKY 501 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGGVPK--------NPGG-------------KHKVRGDINVLLLGDPGTAKSQFLKY 501 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcCCcc--------CCCC-------------CceeccceeEEEecCCCccHHHHHHH
Confidence 55555667999999999998887411110 0000 000 1124899999999999999999
Q ss_pred HHHHhCCcEEEee-ccc---ccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 350 LARYVNVPFVIAD-ATT---LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 350 LA~~lg~~fv~i~-~s~---l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
+++...+.++..- +++ ++. ++-.+ ...+++--++. .+..+.+||.+|||+|+|... -
T Consensus 502 ~eK~s~RAV~tTGqGASavGLTa--~v~Kd--PvtrEWTLEaG-ALVLADkGvClIDEFDKMndq--------------D 562 (854)
T KOG0477|consen 502 AEKTSPRAVFTTGQGASAVGLTA--YVRKD--PVTREWTLEAG-ALVLADKGVCLIDEFDKMNDQ--------------D 562 (854)
T ss_pred HHhcCcceeEeccCCccccceeE--EEeeC--CccceeeeccC-eEEEccCceEEeehhhhhccc--------------c
Confidence 9998876655321 111 110 11111 00111111111 122357899999999999754 2
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHH
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~ 505 (570)
...+.++||...++|...|..+.. ...+.+|+|.|+. .+|.+..+-|...+
T Consensus 563 RtSIHEAMEQQSISISKAGIVtsL--------qArctvIAAanPi-------gGRY~~s~tFaqNV-------------- 613 (854)
T KOG0477|consen 563 RTSIHEAMEQQSISISKAGIVTSL--------QARCTVIAAANPI-------GGRYNPSLTFAQNV-------------- 613 (854)
T ss_pred cchHHHHHHhcchhhhhhhHHHHH--------HhhhhhheecCCC-------CCccCCccchhhcc--------------
Confidence 345788898777777444433332 3345667777765 35666666553211
Q ss_pred HHHHHhhcChhhHHhcCCChhHhcccCeEEecCCC
Q 008329 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLAL 540 (570)
Q Consensus 506 ~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~l 540 (570)
.+....++||++.+.+.+.
T Consensus 614 ----------------~ltePIlSRFDiLcVvkD~ 632 (854)
T KOG0477|consen 614 ----------------DLTEPILSRFDILCVVKDT 632 (854)
T ss_pred ----------------ccccchhhhcceeeeeecc
Confidence 1456788999888766543
No 228
>PRK08116 hypothetical protein; Validated
Probab=98.30 E-value=1.7e-06 Score=88.98 Aligned_cols=86 Identities=19% Similarity=0.374 Sum_probs=51.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc---ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcch
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~---g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEI 404 (570)
.+++|+|++|||||.||.++++.+ +.+++.++..++... .|-... .....+.+.. .....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence 469999999999999999999886 667777776664320 010000 0000011111 123459999998
Q ss_pred hhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 405 DKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 405 D~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..-... +..+..|..+++.
T Consensus 188 g~e~~t------------~~~~~~l~~iin~ 206 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIIDS 206 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHHH
Confidence 542211 2267788888884
No 229
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.27 E-value=2.5e-06 Score=88.22 Aligned_cols=127 Identities=26% Similarity=0.407 Sum_probs=80.5
Q ss_pred CcEEEECCCCCchHHHHHHHHH------HhCCcEEEeecccccccccccchhhHHHHHHhhhcch----hHhhhcCeEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR------YVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDY----NVAAAQQGIVY 400 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~------~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~----~v~~~~~gILf 400 (570)
.++||.||+|.||+.||+.|-. .+..+|++++|+.+...+-+.. +-..+...|+.+.. .+..+.++++|
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsa-lfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSA-LFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHH-HHhhhccccccchhhhhhhhccCCCceEe
Confidence 5899999999999999998853 3478899999988764211110 11223344444432 34457889999
Q ss_pred EcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcc
Q 008329 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERR 480 (570)
Q Consensus 401 IDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rr 480 (570)
+|||..+..+ -|..||+.+|+.. +.+-+....+ .+++-+|+ |+..|+...+.+++
T Consensus 288 ldeigelgad--------------eqamllkaieekr---------f~pfgsdr~v-~sdfqlia-gtvrdlrq~vaeg~ 342 (531)
T COG4650 288 LDEIGELGAD--------------EQAMLLKAIEEKR---------FYPFGSDRQV-SSDFQLIA-GTVRDLRQLVAEGK 342 (531)
T ss_pred hHhhhhcCcc--------------HHHHHHHHHHhhc---------cCCCCCcccc-ccchHHhh-hhHHHHHHHHhccc
Confidence 9999998765 5788999998432 1122211122 23344444 44556777777776
Q ss_pred ccc
Q 008329 481 QDS 483 (570)
Q Consensus 481 fd~ 483 (570)
|..
T Consensus 343 fre 345 (531)
T COG4650 343 FRE 345 (531)
T ss_pred hHH
Confidence 644
No 230
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=1.8e-06 Score=77.20 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=27.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh--------CCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV--------NVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l--------g~~fv~i~~s~l 366 (570)
+.++++||+|+|||++++.+++.+ ..+++.+++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS 48 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence 578899999999999999999877 566777766553
No 231
>PRK06526 transposase; Provisional
Probab=98.22 E-value=1.2e-06 Score=89.42 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=51.4
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
...+++|+||||||||+||.+|+..+ +..+..+++.++... +........+.+.+.. .....+|+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~~------l~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELVK------LGRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHHH------hccCCEEEEcccc
Confidence 45689999999999999999998765 445444444443210 0000000001111111 1345699999999
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+.... ..++.|.++++
T Consensus 170 ~~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 170 YIPFEP------------EAANLFFQLVS 186 (254)
T ss_pred cCCCCH------------HHHHHHHHHHH
Confidence 875432 15677888887
No 232
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.4e-05 Score=83.36 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=53.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE----------------eecccccccccccchh-hHHHHHHhhhcchhHhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI----------------ADATTLTQAGYVGEDV-ESILYKLLTVSDYNVAA 393 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~----------------i~~s~l~~~g~vGe~~-~~~lr~lf~~a~~~v~~ 393 (570)
+.+||+|| +||+++|+.+|+.+.+.-.. -+-.|+....-.|..+ .+.+|++..........
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 67889996 68999999999887432100 0001111000001110 23445544433222223
Q ss_pred hcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 394 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 394 ~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+...|++||++|+|... ..|+||+.+|+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE 130 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE 130 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC
Confidence 56679999999999876 89999999995
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.20 E-value=3.9e-06 Score=85.42 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=52.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccc--hhhHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGE--DVESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe--~~~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
.+++|+|+||||||+||.+||..+ +..++.++..++.. .+... .......+++.. .....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~-~l~~~~~~~~~~~~~~l~~------l~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS-AMKDTFSNSETSEEQLLND------LSNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH-HHHHHHhhccccHHHHHHH------hccCCEEEEeCCC
Confidence 478999999999999999999888 56677776666442 01100 000000111111 1244599999998
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..... +-..+.|.++++.
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~~ 190 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVDR 190 (244)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 86422 1245678888884
No 234
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.18 E-value=1.9e-06 Score=103.03 Aligned_cols=156 Identities=24% Similarity=0.276 Sum_probs=101.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccc-cccccchhhHHHH-HHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESILY-KLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~-~g~vGe~~~~~lr-~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
-++|+.||+-+|||++...+|+..+..|++++-.+-++ ..|+|.-+..--- --|.+....-+..++--|++||..-+.
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 58999999999999999999999999999999887554 2355432100000 001111111123456688999998887
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHc-CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc
Q 008329 409 KKAESLNISRDVSGEGVQQALLKMLE-GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (570)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~~LL~~LE-g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f 487 (570)
.+ +..+|.+++| .+.+-|||......+ ..++++.+|-|++. +|
T Consensus 969 TD--------------VLEaLNRLLDDNRelfIPETqevV~P--------Hp~F~lFATQNppg--------------~Y 1012 (4600)
T COG5271 969 TD--------------VLEALNRLLDDNRELFIPETQEVVVP--------HPNFRLFATQNPPG--------------GY 1012 (4600)
T ss_pred HH--------------HHHHHHHhhccccceecCCcceeecc--------CCCeeEEeecCCCc--------------cc
Confidence 66 9999999998 456666666555444 45555555555442 11
Q ss_pred CchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 488 GAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 488 ~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
+- +.++...|.+|| .-+.|.+..+++|..||.+.+
T Consensus 1013 gG------------------------------RK~LSrAFRNRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1013 GG------------------------------RKGLSRAFRNRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cc------------------------------hHHHHHHHHhhh-HhhhcccCcHHHHHHHHhccC
Confidence 10 012456777777 345678888888888887765
No 235
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=8.1e-06 Score=81.93 Aligned_cols=28 Identities=36% Similarity=0.521 Sum_probs=23.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
+.++|+||+|+|||+|++++++..+..+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~ 72 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL 72 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 4588999999999999999998765443
No 236
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.16 E-value=2e-06 Score=93.96 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=114.5
Q ss_pred HHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCccccc-CCcEEEECCCCCchHHHH
Q 008329 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELE-KSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 269 ~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~-~~~vLL~GPPGTGKTtLA 347 (570)
+++.+.+...|.|.+.+|+.|..++.-.-. + .+ +..+++. .-+++|+|.||+.|+.|.
T Consensus 334 ekLa~SiAPEIyGheDVKKaLLLlLVGgvd--------~------~~-------~dGMKIRGdINicLmGDPGVAKSQLL 392 (721)
T KOG0482|consen 334 EKLAASIAPEIYGHEDVKKALLLLLVGGVD--------K------SP-------GDGMKIRGDINICLMGDPGVAKSQLL 392 (721)
T ss_pred HHHHHhhchhhccchHHHHHHHHHhhCCCC--------C------CC-------CCCceeecceeEEecCCCchhHHHHH
Confidence 445556666799999999999877740000 0 00 0112222 138999999999999999
Q ss_pred HHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhh----cchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 348 KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTV----SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 348 raLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~----a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
+.|.+..-+..+..-..+ .-||-+ ....++-.+. ....+..+.+||..|||+|+|...
T Consensus 393 kyi~rlapRgvYTTGrGS----SGVGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~------------- 454 (721)
T KOG0482|consen 393 KYISRLAPRGVYTTGRGS----SGVGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES------------- 454 (721)
T ss_pred HHHHhcCcccceecCCCC----Cccccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------------
Confidence 999998865554322111 112222 1111111110 001122357899999999999865
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChH
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~ 503 (570)
-..++.++||..+++|...|..+.. + .+..|+++.|+.- +|.+ |-+
T Consensus 455 -DRtAIHEVMEQQTISIaKAGI~TtL-------N-AR~sILaAANPay-------GRYn-------prr----------- 500 (721)
T KOG0482|consen 455 -DRTAIHEVMEQQTISIAKAGINTTL-------N-ARTSILAAANPAY-------GRYN-------PRR----------- 500 (721)
T ss_pred -hhHHHHHHHHhhhhhhhhhccccch-------h-hhHHhhhhcCccc-------cccC-------ccc-----------
Confidence 3567999999888888555544432 2 2244566666431 1111 100
Q ss_pred HHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 504 ~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
++.+ .-.|.+.+++||+.++-+.+-...|-...|+++.
T Consensus 501 ----s~e~--------NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 501 ----SPEQ--------NINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred ----ChhH--------hcCCcHHHHHhhhhhhhhccCCcccchHHHHHHh
Confidence 0111 1247888999998888776655555555555544
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=98.16 E-value=2.7e-06 Score=86.98 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=54.8
Q ss_pred CCcccccCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEE
Q 008329 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (570)
Q Consensus 323 ~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gIL 399 (570)
..++-....+++|+||||||||+||.+++..+ +..+..+++.++.. .+........+...+... .....++
T Consensus 95 ~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-~l~~a~~~~~~~~~~~~~-----~~~~dlL 168 (259)
T PRK09183 95 SLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-QLSTAQRQGRYKTTLQRG-----VMAPRLL 168 (259)
T ss_pred cCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-HHHHHHHCCcHHHHHHHH-----hcCCCEE
Confidence 33443344578899999999999999998664 55555555554431 110000000111111110 1345699
Q ss_pred EEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 400 fIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+|||++...... ..++.|+++++.
T Consensus 169 iiDdlg~~~~~~------------~~~~~lf~li~~ 192 (259)
T PRK09183 169 IIDEIGYLPFSQ------------EEANLFFQVIAK 192 (259)
T ss_pred EEcccccCCCCh------------HHHHHHHHHHHH
Confidence 999998764432 156678888873
No 238
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.14 E-value=5.6e-06 Score=76.24 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=51.0
Q ss_pred CCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEE-EECCCCCch
Q 008329 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNIL-LMGPTGSGK 343 (570)
Q Consensus 265 ~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vL-L~GPPGTGK 343 (570)
....+.+...|++.|.||+-|++.+..+|..++... .+ .++-|| |+|+|||||
T Consensus 13 ~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-------------~p-------------~KpLVlSfHG~tGtGK 66 (127)
T PF06309_consen 13 KYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-------------NP-------------RKPLVLSFHGWTGTGK 66 (127)
T ss_pred CCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-------------CC-------------CCCEEEEeecCCCCcH
Confidence 356788999999999999999999999998666521 00 112333 999999999
Q ss_pred HHHHHHHHHHh
Q 008329 344 TLLAKTLARYV 354 (570)
Q Consensus 344 TtLAraLA~~l 354 (570)
|.+++.||+.+
T Consensus 67 n~v~~liA~~l 77 (127)
T PF06309_consen 67 NFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 239
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.3e-05 Score=88.38 Aligned_cols=92 Identities=29% Similarity=0.413 Sum_probs=63.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchh---hHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~---~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
..+||.||||+|||+||-.+|...+.||+.+-..+- .+|-+. -..+.+.|+.+. +..-+||++|+|+++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----miG~sEsaKc~~i~k~F~DAY----kS~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----MIGLSESAKCAHIKKIFEDAY----KSPLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----ccCccHHHHHHHHHHHHHHhh----cCcceEEEEcchhhh
Confidence 478999999999999999999999999998654432 333331 224566676654 345689999999999
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..- ...+.-++ .-+.++|+-++.
T Consensus 611 iD~---vpIGPRfS-N~vlQaL~VllK 633 (744)
T KOG0741|consen 611 LDY---VPIGPRFS-NLVLQALLVLLK 633 (744)
T ss_pred hcc---cccCchhh-HHHHHHHHHHhc
Confidence 753 22232222 236666777765
No 240
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2.6e-05 Score=81.23 Aligned_cols=113 Identities=21% Similarity=0.130 Sum_probs=68.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeec--------ccc---ccc---ccccchhhHHHHHHhhhcchhHhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA--------TTL---TQA---GYVGEDVESILYKLLTVSDYNVAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~--------s~l---~~~---g~vGe~~~~~lr~lf~~a~~~v~~~~~ 396 (570)
+.+||+||.|+||+++|.++|+.+.+.-..-.| .|+ ... ..++ .+.++++..........+..
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHS---IETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCc---HHHHHHHHHHHhhCccCCCc
Confidence 678899999999999999999988542100001 111 000 0112 22344443333222223456
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCC-CChHHH
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF-VDIEKT 475 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~-~dLe~~ 475 (570)
.|++||++|+|... .+|+||+.||+ ...+++||..++. ..+.+.
T Consensus 97 kv~ii~~ad~mt~~--------------AaNaLLK~LEE---------------------Pp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 97 KIYIIHEADRMTLD--------------AISAFLKVLED---------------------PPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHhhc---------------------CCCCeEEEEEeCChhhCcHH
Confidence 79999999999987 89999999995 1334555554444 446666
Q ss_pred HHhccc
Q 008329 476 ISERRQ 481 (570)
Q Consensus 476 l~~Rrf 481 (570)
++.|.+
T Consensus 142 I~SRcq 147 (290)
T PRK05917 142 IRSRSL 147 (290)
T ss_pred HHhcce
Confidence 665543
No 241
>PRK08181 transposase; Validated
Probab=98.10 E-value=4.5e-06 Score=86.11 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=53.7
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhh
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~ 406 (570)
..+++|+||||||||.||.+++..+ +..++.++..++... +..........+.+.. .....+|+|||++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg~ 178 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAK------LDKFDLLILDDLAY 178 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHH------HhcCCEEEEecccc
Confidence 3579999999999999999999765 556666666554421 0000000001111111 13456999999988
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..... ..++.|+++++.
T Consensus 179 ~~~~~------------~~~~~Lf~lin~ 195 (269)
T PRK08181 179 VTKDQ------------AETSVLFELISA 195 (269)
T ss_pred ccCCH------------HHHHHHHHHHHH
Confidence 75431 256788888873
No 242
>PF13173 AAA_14: AAA domain
Probab=98.08 E-value=1.4e-05 Score=72.64 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=44.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC--CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg--~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
..++|.||.||||||+++.+++.+. ..++.++..+.......- .+ +.+.+... ......+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~---~~-~~~~~~~~----~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD---PD-LLEYFLEL----IKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh---hh-hHHHHHHh----hccCCcEEEEehhhhhc
Confidence 4678999999999999999998775 667777776643211000 00 11221111 01256799999999985
No 243
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.08 E-value=3.7e-06 Score=92.04 Aligned_cols=202 Identities=18% Similarity=0.282 Sum_probs=113.3
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHH
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraL 350 (570)
|.+.+...|.|.+++|+++.-++. ..++++.+. +.-+ . ..-+|||.|.|||.|+.|.+-+
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLF-------gGsrK~LpD-------g~~l-----R-GDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLF-------GGSRKRLPD-------GVTL-----R-GDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhh-------cCccccCCC-------ccee-----c-cceeEEEecCCchhHHHHHHHH
Confidence 455555678999999999987773 333333221 1111 1 1248999999999999999988
Q ss_pred HHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHH
Q 008329 351 ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (570)
Q Consensus 351 A~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL 430 (570)
-+....-++. ++..-...|+...-..+....-|......+..+.+||+.|||+|+|-.+ -.-++.
T Consensus 385 EkvsPIaVYT-SGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAIH 449 (729)
T KOG0481|consen 385 EKVSPIAVYT-SGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAIH 449 (729)
T ss_pred HhcCceEEEe-cCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHHH
Confidence 8766443332 2211111111100000000001111111122367899999999999754 234688
Q ss_pred HHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHH
Q 008329 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLM 510 (570)
Q Consensus 431 ~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll 510 (570)
++||..+++|...|..+ ++ .++.-++++.|+.- +|.|.. -
T Consensus 450 EAMEQQTISIAKAGITT-------~L-NSRtSVLAAANpvf-------GRyDd~---K---------------------- 489 (729)
T KOG0481|consen 450 EAMEQQTISIAKAGITT-------TL-NSRTSVLAAANPVF-------GRYDDT---K---------------------- 489 (729)
T ss_pred HHHHhhhHHHhhhccee-------ee-cchhhhhhhcCCcc-------cccccc---C----------------------
Confidence 99998888775444333 22 34455566666531 222111 0
Q ss_pred hhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 511 ETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 511 ~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
.++|-+ .|.|..++||+.+..+.+-..++-...|+++
T Consensus 490 ---t~~dNI--Df~~TILSRFDmIFIVKD~h~~~~D~~lAkH 526 (729)
T KOG0481|consen 490 ---TGEDNI--DFMPTILSRFDMIFIVKDEHDEERDITLAKH 526 (729)
T ss_pred ---Cccccc--chhhhHhhhccEEEEEeccCcchhhhHHHHH
Confidence 112212 2679999999999998776666555555543
No 244
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=1.8e-05 Score=90.06 Aligned_cols=118 Identities=20% Similarity=0.365 Sum_probs=77.6
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeecccccc---------cccccchh--------
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV-------- 376 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l~~---------~g~vGe~~-------- 376 (570)
+..++++++++++++.+. |+||+|.||||+|..+-+.+.-. -+.+|+.++.+ .++||+++
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 556999999999999888 99999999999999999887321 24455555443 34555431
Q ss_pred hH-----------HHHHHhhhcch------------------------------hH---hhhcCeEEEEcchhhhhhhhh
Q 008329 377 ES-----------ILYKLLTVSDY------------------------------NV---AAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 377 ~~-----------~lr~lf~~a~~------------------------------~v---~~~~~gILfIDEID~L~~~r~ 412 (570)
++ .+...-+.+.. .+ .-.+|.||++||+.++....+
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 00 01110000000 00 124799999999999886633
Q ss_pred hcccCCCCchHHHHHHHHHHHcCCeeeecCC
Q 008329 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEK 443 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~ 443 (570)
..-+|.+|-+.|++++|.+-.+
T Consensus 640 ---------E~lVq~aL~~~~~~rTVlvIAH 661 (716)
T KOG0058|consen 640 ---------EYLVQEALDRLMQGRTVLVIAH 661 (716)
T ss_pred ---------HHHHHHHHHHhhcCCeEEEEeh
Confidence 2348899999999987766443
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.04 E-value=1.3e-05 Score=84.99 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=51.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchh--hHHHHHHhhhcchhHhhhcCeEEEEcchh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDV--ESILYKLLTVSDYNVAAAQQGIVYIDEVD 405 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~--~~~lr~lf~~a~~~v~~~~~gILfIDEID 405 (570)
.+++|+||+|||||.||.+||+.+ +..++.++..++... +..... .......+.. ...--+|+|||+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~-l~~~~~~~~~~~~~~~~~------l~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI-LREIRFNNDKELEEVYDL------LINCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH-HHHHHhccchhHHHHHHH------hccCCEEEEeccC
Confidence 689999999999999999999887 556666666654320 000000 0000000000 1233589999987
Q ss_pred hhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 406 KITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 406 ~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..... +..++.|..+++.
T Consensus 257 ~e~~t------------~~~~~~Lf~iin~ 274 (329)
T PRK06835 257 TEKIT------------EFSKSELFNLINK 274 (329)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 75422 2256778888874
No 246
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.04 E-value=4.8e-06 Score=80.62 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=50.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc---cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcch
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~---~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEI 404 (570)
.+++|+||+|||||.||.+++..+ +.+...++..++.. ..+......+.+..+ ....+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------~~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL----------KRVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------HTSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc----------ccccEeccccc
Confidence 689999999999999999999776 66777777776542 111111111111111 23458999998
Q ss_pred hhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 405 DKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 405 D~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
...... +...+.|.++++.
T Consensus 118 G~~~~~------------~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIIDE 136 (178)
T ss_dssp TSS---------------HHHHHCTHHHHHH
T ss_pred ceeeec------------ccccccchhhhhH
Confidence 764432 2256778888883
No 247
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=7e-05 Score=78.43 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=54.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc-------------EEEeecccccccccccchh-hHHHHHHhhhcchhH-hhhc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP-------------FVIADATTLTQAGYVGEDV-ESILYKLLTVSDYNV-AAAQ 395 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~-------------fv~i~~s~l~~~g~vGe~~-~~~lr~lf~~a~~~v-~~~~ 395 (570)
+.+||+|+.|.||+++|+.+++.+.+. +..++. .|... .+.++++........ ....
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~--------~g~~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI--------FDKDLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc--------CCCcCCHHHHHHHHHHhccCCcccCC
Confidence 567799999999999999999987331 111210 01111 133444444433221 1246
Q ss_pred CeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 396 QGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 396 ~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
..|++||++|++... .+++||+.||+
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhhC
Confidence 789999999999866 89999999994
No 248
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.01 E-value=1.9e-05 Score=76.38 Aligned_cols=25 Identities=48% Similarity=0.713 Sum_probs=22.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..++++||.|+|||+|++.+.+.+.
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 6788999999999999999998883
No 249
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=4.8e-05 Score=82.98 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=101.2
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh--
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-- 354 (570)
..+.|.+..+..+.+++..|... -.++.+.+.|-||||||.+..-+-..+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~----------------------------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~ 201 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL----------------------------NTSGSLYVSGQPGTGKTALLSRVLDSLSK 201 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc----------------------------ccCcceEeeCCCCcchHHHHHHHHHhhhh
Confidence 35899999999999998755441 123678899999999999887554333
Q ss_pred --CC-cEEEeecccccccccc-------------cchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCC
Q 008329 355 --NV-PFVIADATTLTQAGYV-------------GEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR 418 (570)
Q Consensus 355 --g~-~fv~i~~s~l~~~g~v-------------Ge~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~ 418 (570)
.. ..+.++|.++....-+ +...+....+.|+... ......-++++||+|.+...
T Consensus 202 ~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~--~q~k~~~llVlDEmD~L~tr-------- 271 (529)
T KOG2227|consen 202 SSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT--KQSKFMLLLVLDEMDHLITR-------- 271 (529)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH--hcccceEEEEechhhHHhhc--------
Confidence 12 3477899886642211 1111111111121110 11123568899999999854
Q ss_pred CCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcC
Q 008329 419 DVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAG 498 (570)
Q Consensus 419 ~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~ 498 (570)
-+..|+.+.+= . ...++.+++|.-.|..|+-+-...
T Consensus 272 ------~~~vLy~lFew------------p------~lp~sr~iLiGiANslDlTdR~Lp-------------------- 307 (529)
T KOG2227|consen 272 ------SQTVLYTLFEW------------P------KLPNSRIILIGIANSLDLTDRFLP-------------------- 307 (529)
T ss_pred ------ccceeeeehhc------------c------cCCcceeeeeeehhhhhHHHHHhh--------------------
Confidence 24446666550 0 123555666766666554332221
Q ss_pred CCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 499 GVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 499 ~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.++. + ...-+.++.|.+|+.+|+++||....
T Consensus 308 -------------rL~~----~-------~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 308 -------------RLNL----D-------LTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred -------------hhhh----c-------cCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1110 0 11225678899999999999999865
No 250
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.3e-05 Score=86.80 Aligned_cols=136 Identities=29% Similarity=0.455 Sum_probs=98.0
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
++.+++++||||+|||+++++++.. +..+..+++.+.. .++.|+. ...++..+..+.. ..++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEK----LAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHH----hCCCeEeechhhhcc
Confidence 3478999999999999999999998 6555666666666 5688887 6777888877654 355999999999999
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHH-Hhcccccccc
Q 008329 409 KKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIG 486 (570)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l-~~Rrfd~~I~ 486 (570)
+.+.. ......+.+...|+..|++.. ... ++++..++..+ ++.+. +..+++..+.
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~~~-------------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDGLK-------------------RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIE 146 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccccc-------------------CCc-eEEEeecCCccccChhHhCccccceeee
Confidence 98775 233344568899999998531 122 44444555555 43333 3448888888
Q ss_pred cCchhhhh
Q 008329 487 FGAPVRAN 494 (570)
Q Consensus 487 f~~p~~e~ 494 (570)
...|+...
T Consensus 147 ~~~~~~~~ 154 (494)
T COG0464 147 VNLPDEAG 154 (494)
T ss_pred cCCCCHHH
Confidence 88777654
No 251
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.92 E-value=0.00013 Score=75.29 Aligned_cols=150 Identities=25% Similarity=0.333 Sum_probs=81.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-C--CcEEEeeccc---------------------ccccccccchhhHHHHHHhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-N--VPFVIADATT---------------------LTQAGYVGEDVESILYKLLTV 386 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-g--~~fv~i~~s~---------------------l~~~g~vGe~~~~~lr~lf~~ 386 (570)
+|++++||+|+||-|.+.++-+++ | .+-..+.... +..+ -.|....-.+.+++.+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPS-DaG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPS-DAGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChh-hcCcccHHHHHHHHHH
Confidence 699999999999999999988776 2 1101111000 1111 1222112223333221
Q ss_pred -c---chh-HhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCe
Q 008329 387 -S---DYN-VAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDI 461 (570)
Q Consensus 387 -a---~~~-v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnv 461 (570)
| .-. ..+..-.||+|.|+|.+..+ +|.+|.+.||.. .+|+
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkY---------------------s~~~ 158 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKY---------------------SSNC 158 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHH---------------------hcCc
Confidence 1 111 11223469999999999876 899999999932 2334
Q ss_pred EEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhccc
Q 008329 462 LFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRF 531 (570)
Q Consensus 462 i~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf 531 (570)
++|...|... +-++++.|-+ .|..+.|+ ++++..-+...+..+.+ .+..+++.|+
T Consensus 159 RlIl~cns~SriIepIrSRCl--~iRvpaps----------~eeI~~vl~~v~~kE~l---~lp~~~l~rI 214 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCL--FIRVPAPS----------DEEITSVLSKVLKKEGL---QLPKELLKRI 214 (351)
T ss_pred eEEEEecCcccchhHHhhhee--EEeCCCCC----------HHHHHHHHHHHHHHhcc---cCcHHHHHHH
Confidence 4444444333 4455554433 23444444 44555555555555442 3556666666
No 252
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.92 E-value=4.4e-05 Score=67.63 Aligned_cols=23 Identities=48% Similarity=0.719 Sum_probs=20.6
Q ss_pred EEEECCCCCchHHHHHHHHHHhC
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg 355 (570)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.88 E-value=5e-05 Score=77.69 Aligned_cols=84 Identities=20% Similarity=0.360 Sum_probs=52.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc---ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDE 403 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~---g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDE 403 (570)
..+++|+||||+|||.||-||+..+ |.++..+..+++... .+-....+..+... ...--+|+|||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---------l~~~dlLIiDD 175 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---------LKKVDLLIIDD 175 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---------hhcCCEEEEec
Confidence 3689999999999999999999887 667777777665420 00000001111111 13445999999
Q ss_pred hhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 404 VDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 404 ID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+-...... ...+.+++++.
T Consensus 176 lG~~~~~~------------~~~~~~~q~I~ 194 (254)
T COG1484 176 IGYEPFSQ------------EEADLLFQLIS 194 (254)
T ss_pred ccCccCCH------------HHHHHHHHHHH
Confidence 88765431 14556666666
No 254
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00014 Score=74.68 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=67.7
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhCCcEEEeec--------------ccccc----cccccchhhHHHHHHhhhcchhH
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADA--------------TTLTQ----AGYVGEDVESILYKLLTVSDYNV 391 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~--------------s~l~~----~g~vGe~~~~~lr~lf~~a~~~v 391 (570)
++.+||+||.|+||..+|.++|+.+.+.--.-.| .|+.- ..-++. +.++++........
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~i---d~ir~l~~~l~~~s 83 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKK---EDALSIINKLNRPS 83 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCH---HHHHHHHHHHccCc
Confidence 4788899999999999999999887432100001 11110 001121 22333333221111
Q ss_pred -hhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCC-
Q 008329 392 -AAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAF- 469 (570)
Q Consensus 392 -~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~- 469 (570)
......|++||++|+|... +.|+||+.+|+ ...+++||..+..
T Consensus 84 ~e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE---------------------Pp~~t~fiLit~~~ 128 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE---------------------PPKNTYGIFTTRNE 128 (261)
T ss_pred hhcCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC---------------------CCCCeEEEEEECCh
Confidence 1134579999999999977 89999999995 1344556555554
Q ss_pred CChHHHHHhcc
Q 008329 470 VDIEKTISERR 480 (570)
Q Consensus 470 ~dLe~~l~~Rr 480 (570)
..+.+.++.|-
T Consensus 129 ~~lLpTI~SRC 139 (261)
T PRK05818 129 NNILNTILSRC 139 (261)
T ss_pred HhCchHhhhhe
Confidence 44666776663
No 255
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.87 E-value=1.8e-05 Score=81.72 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=62.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC-c--EEEeecccccccccccchhhHHHHHHhhhc-------chhHhhhcCeEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV-P--FVIADATTLTQAGYVGEDVESILYKLLTVS-------DYNVAAAQQGIVY 400 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~-~--fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a-------~~~v~~~~~gILf 400 (570)
.++||+||+|||||++++.+-+.+.. . ...++.+..+. ...+.+.++.. .+.....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 68999999999999999887665532 2 22344433221 22333333221 0112234667999
Q ss_pred EcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 401 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 401 IDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
||++..-.++. .......+.|.++||.. .-++.... .-....++.+|++.+..
T Consensus 106 iDDlN~p~~d~--------ygtq~~iElLRQ~i~~~--------g~yd~~~~-~~~~i~~i~~vaa~~p~ 158 (272)
T PF12775_consen 106 IDDLNMPQPDK--------YGTQPPIELLRQLIDYG--------GFYDRKKL-EWKSIEDIQFVAAMNPT 158 (272)
T ss_dssp EETTT-S---T--------TS--HHHHHHHHHHHCS--------EEECTTTT-EEEEECSEEEEEEESST
T ss_pred ecccCCCCCCC--------CCCcCHHHHHHHHHHhc--------CcccCCCc-EEEEEeeeEEEEecCCC
Confidence 99998866542 11123567788888831 11222111 23445678888887753
No 256
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.85 E-value=4.4e-05 Score=77.58 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=34.6
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |.||+|||||||.+.||...
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56899999999999999 99999999999999999876
No 257
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.83 E-value=0.00017 Score=75.33 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=47.3
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
.+.|..--.+.-||...|++.|..+-. +...-++ ....++||+|+++.|||+++
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~-----Ll~~P~~---------------------~Rmp~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEE-----LLEYPKR---------------------HRMPNLLIVGDSNNGKTMII 78 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHH-----HHhCCcc---------------------cCCCceEEecCCCCcHHHHH
Confidence 344454455678999999988776553 1111110 11258999999999999999
Q ss_pred HHHHHHh---------CCcEEEeeccc
Q 008329 348 KTLARYV---------NVPFVIADATT 365 (570)
Q Consensus 348 raLA~~l---------g~~fv~i~~s~ 365 (570)
+.+.+.. ..|++.+.+..
T Consensus 79 ~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 79 ERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred HHHHHHCCCCCCCCCccccEEEEecCC
Confidence 9998665 23566666543
No 258
>PF05729 NACHT: NACHT domain
Probab=97.82 E-value=0.00023 Score=65.46 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-++++|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 36799999999999999999766
No 259
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.81 E-value=9.6e-05 Score=83.85 Aligned_cols=111 Identities=20% Similarity=0.319 Sum_probs=69.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHh----------CCcEEEeeccccccc---------ccccchh-----hHHHHHHhhhc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQA---------GYVGEDV-----ESILYKLLTVS 387 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l----------g~~fv~i~~s~l~~~---------g~vGe~~-----~~~lr~lf~~a 387 (570)
-+.+.|-||||||.+++.+-+.+ ...++++++-.+... .+-|+.. ...+...|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 56699999999999999887655 345788888776641 1222221 01111112100
Q ss_pred chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecC
Q 008329 388 DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGG 467 (570)
Q Consensus 388 ~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~ag 467 (570)
-....++||+|||.|.|... -|+.|..+++=. ....+.+++|+-+
T Consensus 504 ---k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdWp------------------t~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 504 ---KPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDWP------------------TLKNSKLVVIAIA 548 (767)
T ss_pred ---CCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcCC------------------cCCCCceEEEEec
Confidence 12356789999999999865 466677777611 1234457778878
Q ss_pred CCCChHHHHH
Q 008329 468 AFVDIEKTIS 477 (570)
Q Consensus 468 n~~dLe~~l~ 477 (570)
|..|+.+-+.
T Consensus 549 NTmdlPEr~l 558 (767)
T KOG1514|consen 549 NTMDLPERLL 558 (767)
T ss_pred ccccCHHHHh
Confidence 8777554444
No 260
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.81 E-value=0.00013 Score=81.15 Aligned_cols=196 Identities=20% Similarity=0.279 Sum_probs=114.4
Q ss_pred HhhhcccCChHHHHHHHHHHHHh-hhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHH
Q 008329 273 KGLDKFVIGQERAKKVLSVAVYN-HYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 273 ~~L~~~ViGqd~ak~~L~~aV~~-~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA 351 (570)
+.|...|.|.+.+|++|.-++.- .-+.+.+.++.| ..-++||+|.|-+.|+.|.|.+-
T Consensus 297 ~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlR---------------------GDINiLlvGDPSvAKSQLLRyVL 355 (818)
T KOG0479|consen 297 RSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLR---------------------GDINILLVGDPSVAKSQLLRYVL 355 (818)
T ss_pred hccCcccccHHHHHHHHHHHHhccceeccCCCceec---------------------cceeEEEecCchHHHHHHHHHHH
Confidence 34456789999999988877631 111222222222 22589999999999999999987
Q ss_pred HHhCCcEEEee-ccc---ccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHH
Q 008329 352 RYVNVPFVIAD-ATT---LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (570)
Q Consensus 352 ~~lg~~fv~i~-~s~---l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~ 427 (570)
+.....+-..- +++ ++. -|-.+.+.--+.+-..| +..+..||+.|||+|+|..- -.-
T Consensus 356 ntAplAI~TTGRGSSGVGLTA--AVTtD~eTGERRLEAGA---MVLADRGVVCIDEFDKMsDi--------------DRv 416 (818)
T KOG0479|consen 356 NTAPLAIATTGRGSSGVGLTA--AVTTDQETGERRLEAGA---MVLADRGVVCIDEFDKMSDI--------------DRV 416 (818)
T ss_pred hcccccccccCCCCCCcccee--EEeeccccchhhhhcCc---eEEccCceEEehhcccccch--------------hHH
Confidence 65532211100 000 110 00000011111221111 12357899999999999754 345
Q ss_pred HHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHH
Q 008329 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (570)
Q Consensus 428 ~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~ 507 (570)
++.++||..+|+|...|.-.. ++ .++-++++.|+.- ++.|. +-.|. +
T Consensus 417 AIHEVMEQqtVTIaKAGIHas-------LN-ARCSVlAAANPvy-------G~Yd~---~k~P~-e-------------- 463 (818)
T KOG0479|consen 417 AIHEVMEQQTVTIAKAGIHAS-------LN-ARCSVLAAANPVY-------GQYDQ---SKTPM-E-------------- 463 (818)
T ss_pred HHHHHHhcceEEeEeccchhh-------hc-cceeeeeecCccc-------cccCC---CCChh-h--------------
Confidence 799999988888855443332 22 2355666766531 11111 11111 1
Q ss_pred HHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 508 ~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.-++...+++||+.++.+.+-..++..+.+.++.
T Consensus 464 ------------NIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHV 497 (818)
T KOG0479|consen 464 ------------NIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHV 497 (818)
T ss_pred ------------ccCCcHHHHhhhcEEEEEeccccchHHHHHHHHH
Confidence 2368899999999998888877788888888775
No 261
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=7.8e-05 Score=89.33 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=81.5
Q ss_pred CCCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCC--cEEEeecccccc---------cccccchh---hHHH
Q 008329 316 CTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQ---------AGYVGEDV---ESIL 380 (570)
Q Consensus 316 ~~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~l~~---------~g~vGe~~---~~~l 380 (570)
++..++++.++++.++.-+ |+||+||||+|+...|-+.++. --+.+|+.++.. .+.|++.+ ...+
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TI 1080 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTI 1080 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccH
Confidence 5677899999999999888 9999999999999999998843 246677776553 34455431 1111
Q ss_pred HHH----------------hhhcch--h-------------------------------HhhhcCeEEEEcchhhhhhhh
Q 008329 381 YKL----------------LTVSDY--N-------------------------------VAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 381 r~l----------------f~~a~~--~-------------------------------v~~~~~gILfIDEID~L~~~r 411 (570)
++- .+.+.- . .--..|.||+|||+.++....
T Consensus 1081 rENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDse 1160 (1228)
T KOG0055|consen 1081 RENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSE 1160 (1228)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhh
Confidence 111 111100 0 012479999999999887653
Q ss_pred hhcccCCCCchHHHHHHHHHHHcCCeeeecCCC
Q 008329 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKG 444 (570)
Q Consensus 412 ~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g 444 (570)
+ .+.+|++|-++++|+++.+..+.
T Consensus 1161 S---------ErvVQeALd~a~~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1161 S---------ERVVQEALDRAMEGRTTIVIAHR 1184 (1228)
T ss_pred h---------HHHHHHHHHHhhcCCcEEEEecc
Confidence 2 35599999999998766554443
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.80 E-value=4.1e-05 Score=80.39 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=30.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
.+++|+||+|||||.||.++|..+ +.+...+...++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 689999999999999999999888 566666666554
No 263
>PRK06921 hypothetical protein; Provisional
Probab=97.77 E-value=4.5e-05 Score=78.45 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=27.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh----CCcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l----g~~fv~i~~s~ 365 (570)
.+++|+||+|+|||+||.+||+.+ +..++.+...+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 579999999999999999999876 34455555444
No 264
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.71 E-value=8e-05 Score=75.25 Aligned_cols=66 Identities=24% Similarity=0.329 Sum_probs=48.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
...+.||+|||||++++.+|+.+|++++..+|++-.+ ...+.+++...- ..++.+.+||++++..+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~-----~~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLA-----QSGAWLCFDEFNRLSEE 99 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHH-----HHT-EEEEETCCCSSHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHh-----hcCchhhhhhhhhhhHH
Confidence 4568999999999999999999999999999988653 233444443321 35778999999999865
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.71 E-value=0.00021 Score=65.01 Aligned_cols=32 Identities=50% Similarity=0.639 Sum_probs=25.6
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCcEEEeecc
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s 364 (570)
++++||||+|||+++..++..+ +.+.+.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6799999999999999998876 4555555543
No 266
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.71 E-value=0.00039 Score=72.57 Aligned_cols=37 Identities=27% Similarity=0.550 Sum_probs=31.0
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhC--CcEEEeecccc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVN--VPFVIADATTL 366 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg--~~fv~i~~s~l 366 (570)
.+.+|+.|+||+|||.+|-.+++.+| .||..+.++++
T Consensus 66 GraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI 104 (454)
T KOG2680|consen 66 GRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI 104 (454)
T ss_pred ceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence 46889999999999999999999985 47777777663
No 267
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.59 E-value=0.00013 Score=68.79 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=35.4
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc-
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP- 357 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~- 357 (570)
++|.++..+.|...+. ... ...+..++++|++|+|||++.+.+...+..+
T Consensus 2 fvgR~~e~~~l~~~l~-~~~----------------------------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~ 52 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ----------------------------SGSPRNLLLTGESGSGKTSLLRALLDRLAERG 52 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS----------------------------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH-HHH----------------------------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4788888888887762 000 0123678899999999999999887666322
Q ss_pred --EEEeecccc
Q 008329 358 --FVIADATTL 366 (570)
Q Consensus 358 --fv~i~~s~l 366 (570)
++.+++...
T Consensus 53 ~~~~~~~~~~~ 63 (185)
T PF13191_consen 53 GYVISINCDDS 63 (185)
T ss_dssp --EEEEEEETT
T ss_pred CEEEEEEEecc
Confidence 555555444
No 268
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0002 Score=73.67 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=34.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.++|+|++++..+.++ |+|++||||||++|++.+...
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 4789999999999999 999999999999999998874
No 269
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.57 E-value=0.00024 Score=85.32 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=80.1
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeecccccc---------cccccchh--------
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQ---------AGYVGEDV-------- 376 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l~~---------~g~vGe~~-------- 376 (570)
+..+++++++.++++..+ |+||+||||||+...+.+.++-. -+.+++.++.. .+.|.+.+
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~ 444 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR 444 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence 567899999999999877 99999999999999999988432 24456555432 23333321
Q ss_pred -----------hHHHHHHhhhcch------------------------------h---HhhhcCeEEEEcchhhhhhhhh
Q 008329 377 -----------ESILYKLLTVSDY------------------------------N---VAAAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 377 -----------~~~lr~lf~~a~~------------------------------~---v~~~~~gILfIDEID~L~~~r~ 412 (570)
.+.+.+....+.. . .....|.||++||+-+.....+
T Consensus 445 eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~s 524 (1228)
T KOG0055|consen 445 ENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 524 (1228)
T ss_pred HHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHH
Confidence 0001111100000 0 0124789999999988776532
Q ss_pred hcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCC
Q 008329 413 SLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPR 450 (570)
Q Consensus 413 ~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~ 450 (570)
.+.+|++|-+++.|+++.+..+.-.....
T Consensus 525 ---------e~~Vq~ALd~~~~grTTivVaHRLStIrn 553 (1228)
T KOG0055|consen 525 ---------ERVVQEALDKASKGRTTIVVAHRLSTIRN 553 (1228)
T ss_pred ---------HHHHHHHHHHhhcCCeEEEEeeehhhhhc
Confidence 34589999999998877665554444333
No 270
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.55 E-value=0.00023 Score=82.51 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 314 SSCTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 314 ~~~~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
...++.++++++++++++..+ ++|++|||||||+|.+.+..
T Consensus 482 ~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 482 GPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334457999999999988766 99999999999999999876
No 271
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00032 Score=77.08 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=40.9
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeecccc
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTL 366 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l 366 (570)
...++++++++++++..+ |+||+|.||+|+.|.+-+..+.. -+.+|+.++
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI 602 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI 602 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence 456899999999999888 99999999999999999887432 355565553
No 272
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.50 E-value=0.00049 Score=77.25 Aligned_cols=31 Identities=35% Similarity=0.464 Sum_probs=27.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
+-+||+||+||||||+++++|++++..+.+.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 3456999999999999999999998877764
No 273
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0004 Score=75.52 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=22.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+++|+||+|.|||.|++|+++..
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~ 137 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEA 137 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999877
No 274
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00085 Score=78.93 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=53.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh----------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIV 399 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l----------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gIL 399 (570)
.+-+|+|.||+|||.++.-+|+.+ +..++.++...+.. ..+.|+ ++..+..+...... ...+.||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge-~E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGE-FEERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchH-HHHHHHHHHHHHhc---CCCcEEE
Confidence 578999999999999999999776 23345555544332 334454 46667776655432 2466799
Q ss_pred EEcchhhhhhhh
Q 008329 400 YIDEVDKITKKA 411 (570)
Q Consensus 400 fIDEID~L~~~r 411 (570)
||||++-+....
T Consensus 285 figelh~lvg~g 296 (898)
T KOG1051|consen 285 FLGELHWLVGSG 296 (898)
T ss_pred EecceeeeecCC
Confidence 999999998763
No 275
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.46 E-value=0.00027 Score=67.00 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3788999999999777 99999999999999999876
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=0.00012 Score=64.93 Aligned_cols=30 Identities=47% Similarity=0.790 Sum_probs=26.2
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
+++.|+||+||||+|+.||+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 679999999999999999999987766443
No 277
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.44 E-value=0.00028 Score=65.72 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ +.||+|+||||+++++++..
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3688999999998777 99999999999999999876
No 278
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.42 E-value=0.00028 Score=78.56 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.++++++++++++..+ ++||+|+||||+++++++..
T Consensus 349 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4899999999988777 99999999999999999877
No 279
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.42 E-value=0.00012 Score=90.82 Aligned_cols=118 Identities=25% Similarity=0.267 Sum_probs=81.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccc-cccccchhhHH-HHHHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQ-AGYVGEDVESI-LYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~-~g~vGe~~~~~-lr~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
.++||.||.++|||.+++-+|+..+..+++++-.+.++ ..|+|.-.... -.-.|......-+...+..+++||+....
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 48999999999999999999999999999988776543 23444211000 00011111112234567899999999987
Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHcC-CeeeecCCCccccCCCCceEeecCCeE
Q 008329 409 KKAESLNISRDVSGEGVQQALLKMLEG-TVVNVPEKGARKHPRGDNIQIDTKDIL 462 (570)
Q Consensus 409 ~~r~~~~~~~~~~~e~vq~~LL~~LEg-~~v~ipe~g~~~~~~~~~i~idtsnvi 462 (570)
.+ +..+|.+++++ +.+.+||.....+.+.....+.|.|..
T Consensus 521 ~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~ 561 (1856)
T KOG1808|consen 521 HD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPP 561 (1856)
T ss_pred hH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCc
Confidence 66 89999999995 788888877766666655555555543
No 280
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.38 E-value=0.00056 Score=65.22 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3789999999988776 99999999999999999876
No 281
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.34 E-value=0.00034 Score=79.00 Aligned_cols=37 Identities=27% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++||+|+|||||++.+++.+
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999888777 99999999999999999876
No 282
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.33 E-value=0.00072 Score=76.13 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=35.5
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
+..+++++++.++++..+ ++||+|+||||+++.+.+.+.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456899999999999888 999999999999999999884
No 283
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.31 E-value=0.0006 Score=78.69 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++||+|+|||||++.+++.+
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999888666 99999999999999999877
No 284
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.00074 Score=64.27 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999777 99999999999999999876
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.31 E-value=0.003 Score=61.99 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=46.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc---ccccchhhHHHHHHhhhcchhH-----hhhcCeEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVESILYKLLTVSDYNV-----AAAQQGIV 399 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~---g~vGe~~~~~lr~lf~~a~~~v-----~~~~~gIL 399 (570)
+-.++.||||||||++++.+.+.+ +..++.+..+.-... .-.|.. ...+...+....... ......+|
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIE-AQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS--EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcc-hhhHHHHHhcCCcccccccccCCcccEE
Confidence 346689999999999999988766 455555554432110 000110 111222222221100 02345799
Q ss_pred EEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 400 fIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+|||+-.+... ....|+..++
T Consensus 98 iVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 98 IVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEecccccCHH--------------HHHHHHHHHH
Confidence 99999988755 5555666655
No 286
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00086 Score=68.81 Aligned_cols=38 Identities=39% Similarity=0.702 Sum_probs=34.3
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
...+++++++.++.+.++ |.||+||||||+.+.|-+.+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 345789999999999888 99999999999999998877
No 287
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.24 E-value=0.00083 Score=68.67 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=47.2
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhCCc------EEEeecc---cc---cc-------cccccchhhH---HHHHHhhhc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TL---TQ-------AGYVGEDVES---ILYKLLTVS 387 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg~~------fv~i~~s---~l---~~-------~g~vGe~~~~---~lr~lf~~a 387 (570)
...++|.||+|+||||+++.+++.+... ++.+... +. .. ..-.++.... ..+...+.+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 3578899999999999999999877432 2221111 10 00 0001111111 222334444
Q ss_pred chhHhhhcCeEEEEcchhhhhhhh
Q 008329 388 DYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 388 ~~~v~~~~~gILfIDEID~L~~~r 411 (570)
.+......+.+|||||+.++...-
T Consensus 96 ~~~~~~G~~vll~iDei~r~a~a~ 119 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLARAY 119 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhhhhh
Confidence 443344567899999999997653
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.20 E-value=0.00037 Score=65.14 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=27.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|+|+|||||||+|+.+|+.++.+++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 578899999999999999999999988874
No 289
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.19 E-value=0.00093 Score=63.50 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ +.||+|+|||||+++++..+
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998776 99999999999999999876
No 290
>PRK10536 hypothetical protein; Provisional
Probab=97.18 E-value=0.0032 Score=64.82 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+++.||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999874
No 291
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.0017 Score=65.89 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=45.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC--------CcEEEeeccc-ccccccccchhhHH-HHHHhhhc----ch---hHhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN--------VPFVIADATT-LTQAGYVGEDVESI-LYKLLTVS----DY---NVAA 393 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg--------~~fv~i~~s~-l~~~g~vGe~~~~~-lr~lf~~a----~~---~v~~ 393 (570)
.+.|+.|||||||||+.|-||+.+. ..+..+|-.+ +. .+..|...... .+...... .. .+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa-g~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA-GCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhh-ccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 5789999999999999999998872 2345555443 33 23444321111 11111110 00 1234
Q ss_pred hcCeEEEEcchhhhh
Q 008329 394 AQQGIVYIDEVDKIT 408 (570)
Q Consensus 394 ~~~gILfIDEID~L~ 408 (570)
..|-|+++|||....
T Consensus 217 m~PEViIvDEIGt~~ 231 (308)
T COG3854 217 MSPEVIIVDEIGTEE 231 (308)
T ss_pred cCCcEEEEeccccHH
Confidence 578899999998764
No 292
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00041 Score=66.38 Aligned_cols=32 Identities=44% Similarity=0.717 Sum_probs=29.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
.++++||||+||||+|+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999877664
No 293
>PHA00729 NTP-binding motif containing protein
Probab=97.12 E-value=0.00069 Score=68.40 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.+++|+|+||||||++|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999875
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.11 E-value=0.00066 Score=76.62 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=43.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh-CC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-g~ 356 (570)
++.|++++++.+.+.+.....++ .....-++|+||||+|||+||+.||+.+ ..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl--------------------------~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL--------------------------EEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc--------------------------CCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 47999999999998885333321 0122456699999999999999999887 34
Q ss_pred cEEEeec
Q 008329 357 PFVIADA 363 (570)
Q Consensus 357 ~fv~i~~ 363 (570)
+++.+.+
T Consensus 131 ~~Y~~kg 137 (644)
T PRK15455 131 PIYVLKA 137 (644)
T ss_pred cceeecC
Confidence 6666554
No 295
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.11 E-value=0.0017 Score=62.42 Aligned_cols=23 Identities=39% Similarity=0.680 Sum_probs=20.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999998887
No 296
>PRK13947 shikimate kinase; Provisional
Probab=97.09 E-value=0.00051 Score=64.69 Aligned_cols=31 Identities=39% Similarity=0.620 Sum_probs=28.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
+++|+|+||||||++|+.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999987544
No 297
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00092 Score=67.45 Aligned_cols=39 Identities=33% Similarity=0.571 Sum_probs=35.0
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
...+++++++++..+.++ +.|++|+||||+.++|+....
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356889999999999988 999999999999999998763
No 298
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0013 Score=71.38 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=47.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhCC-----cEEEeecccc----cc--ccc----c----cchhhHHH---HHHhhhc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVNV-----PFVIADATTL----TQ--AGY----V----GEDVESIL---YKLLTVS 387 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg~-----~fv~i~~s~l----~~--~g~----v----Ge~~~~~l---r~lf~~a 387 (570)
....+|+||||+|||+|++.|++.+.. ..+.+-..+. .+ ... + -+.....+ ...++.+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999987632 1111111111 00 000 0 01112222 2344445
Q ss_pred chhHhhhcCeEEEEcchhhhhhhh
Q 008329 388 DYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 388 ~~~v~~~~~gILfIDEID~L~~~r 411 (570)
++........+|||||++++...-
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHH
Confidence 544445677899999999998753
No 299
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0035 Score=68.21 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeeccccc
Q 008329 316 CTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATTLT 367 (570)
Q Consensus 316 ~~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l~ 367 (570)
+....+.++++.++.+..+ ++||+|+||+|+.+.+-+.++.. .+.++..++.
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir 328 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIR 328 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHH
Confidence 4567899999999999888 99999999999999999988543 3555665543
No 300
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.07 E-value=0.00064 Score=73.09 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.3
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
.++++.|+|++|+|||.|+-++...+..
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3579999999999999999999887743
No 301
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.07 E-value=0.0015 Score=81.53 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=34.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~ 356 (570)
.+|++++++++++..+ |+||+|+||||+++.|.+.+..
T Consensus 1182 ~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 5899999999999777 9999999999999999998763
No 302
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.05 E-value=0.0019 Score=74.74 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++||+|+|||||++++++.+
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999888666 99999999999999999887
No 303
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0013 Score=63.08 Aligned_cols=34 Identities=35% Similarity=0.577 Sum_probs=29.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeeccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~ 365 (570)
.++++|+||+||||+|+.|++.++.+.+..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4789999999999999999999998887765433
No 304
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.04 E-value=0.0018 Score=74.69 Aligned_cols=37 Identities=30% Similarity=0.567 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++|++|+|||||++.+++.+
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999888776 99999999999999999887
No 305
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.02 E-value=0.0016 Score=63.40 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=32.3
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
...|+++++.+.++... ++||+||||+++.+++|...
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34689999999888655 99999999999999999876
No 306
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.01 E-value=0.0017 Score=63.06 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.8
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
++++. +.+.++.++ |.||+|+|||||++.|+..+
T Consensus 15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34443 677777777 99999999999999999876
No 307
>PRK03839 putative kinase; Provisional
Probab=97.00 E-value=0.00063 Score=64.99 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
.++|.|+||+||||+++.+|+.++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 378999999999999999999999888654
No 308
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0019 Score=60.29 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+||||++++++..+.
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999888666 999999999999999998763
No 309
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.99 E-value=0.00077 Score=61.96 Aligned_cols=31 Identities=45% Similarity=0.760 Sum_probs=27.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998877443
No 310
>PRK04296 thymidine kinase; Provisional
Probab=96.99 E-value=0.0032 Score=61.41 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
-.+++||+|+||||++..++..+ +...+.+.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45799999999999998887665 44544443
No 311
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.97 E-value=0.00089 Score=66.20 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=57.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r 411 (570)
-++|.|+-|+|||+..+.|+... +.-+..... . .+....+ ...-|+.+||++.+..+
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~-----~---kd~~~~l----------~~~~iveldEl~~~~k~- 110 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD-----D---KDFLEQL----------QGKWIVELDELDGLSKK- 110 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHh----ccCccccCC-----C---cHHHHHH----------HHhHheeHHHHhhcchh-
Confidence 45699999999999999996652 211110110 0 1111111 22348899999998744
Q ss_pred hhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC
Q 008329 412 ESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD 471 (570)
Q Consensus 412 ~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d 471 (570)
.++.|-.++....+.+ +.++++...--..+.+||+|+|..+
T Consensus 111 -------------~~~~lK~~iT~~~~~~------R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 111 -------------DVEALKSFITRRTDTY------RPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred -------------hHHHHHHHhcccceee------ecCCcCcceeeceeEEEEeccCCcc
Confidence 3456666666443332 2233333344456688899999765
No 312
>PLN03130 ABC transporter C family member; Provisional
Probab=96.94 E-value=0.0022 Score=80.88 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+.+|++++++++++..+ |+|++|+|||||+++|.+.+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 35899999999999777 99999999999999999887
No 313
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.93 E-value=0.00069 Score=69.63 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=35.2
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
...++++++++++++.++ |.||+|||||||.+++++.+
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456899999999999888 99999999999999999877
No 314
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0029 Score=70.96 Aligned_cols=36 Identities=22% Similarity=0.500 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.++.+++++++++... |+|++|+||||+..+++..+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 5788999999988777 99999999999999999877
No 315
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.91 E-value=0.0033 Score=62.64 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCCCCCcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 319 ~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
.+.+++++.....-++|+||+|+|||++.+.++.
T Consensus 19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEeeeEEecCCceEEEEECCCCCChHHHHHHHHH
Confidence 3556677777665677999999999999999974
No 316
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.91 E-value=0.0031 Score=71.13 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++||+|+|||||+++|++.+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45899999999888666 99999999999999999987
No 317
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.91 E-value=0.0018 Score=71.61 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=64.5
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccC---------CCCCCCCCCCCCCcccccCCcEE-EEC
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAG---------ESSSCTTDGVDDDTVELEKSNIL-LMG 337 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~---------~~~~~~~~~ld~is~~i~~~~vL-L~G 337 (570)
.+.....|... ++-..+-+.|.+++...-..-.. ..-+.|.+ .+...+...+++++|.+.++..| ++|
T Consensus 292 id~aI~~Wkq~-~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIG 369 (580)
T COG4618 292 IDLAIANWKQF-VAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIG 369 (580)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEEC
Confidence 34455566653 55566667777777522211100 11111111 13333567899999999999999 999
Q ss_pred CCCCchHHHHHHHHHHhC--CcEEEeecccccc
Q 008329 338 PTGSGKTLLAKTLARYVN--VPFVIADATTLTQ 368 (570)
Q Consensus 338 PPGTGKTtLAraLA~~lg--~~fv~i~~s~l~~ 368 (570)
|+|+|||||||++-...- .--+++|+.++.+
T Consensus 370 PSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q 402 (580)
T COG4618 370 PSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ 402 (580)
T ss_pred CCCccHHHHHHHHHcccccCCCcEEecchhhhc
Confidence 999999999999988762 2257788888764
No 318
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.91 E-value=0.00059 Score=61.94 Aligned_cols=26 Identities=50% Similarity=0.773 Sum_probs=22.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
+++.||||+||||+|+.+++.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 67999999999999999999888333
No 319
>PLN03232 ABC transporter C family member; Provisional
Probab=96.91 E-value=0.0023 Score=80.21 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.8
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+|++++++++++..+ ++|++|+||||+++++.+.+
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999998777 99999999999999999876
No 320
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.89 E-value=0.0034 Score=72.70 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++||+|+|||||++.+++.+
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45899999999888666 99999999999999999876
No 321
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0036 Score=60.31 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-.+.++|+||+||||++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468899999999999999999777
No 322
>PRK00625 shikimate kinase; Provisional
Probab=96.89 E-value=0.00093 Score=64.61 Aligned_cols=31 Identities=39% Similarity=0.683 Sum_probs=28.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
+++|+|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5889999999999999999999999887654
No 323
>PHA02774 E1; Provisional
Probab=96.89 E-value=0.0069 Score=68.54 Aligned_cols=76 Identities=18% Similarity=0.400 Sum_probs=49.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE-eecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI-ADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~-i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~ 409 (570)
..++|+||||||||++|.+|++.++...+. ++..+ .-| +..+ ....|++|||+..-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl----------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPL----------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchh----------ccCCEEEEecCcchHH
Confidence 578899999999999999999998654433 44321 001 1111 1224899999822211
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHcCCeeee
Q 008329 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (570)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~i 440 (570)
+-+...|..+|+|..|+|
T Consensus 494 -------------~y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 494 -------------DYIDTYLRNALDGNPVSI 511 (613)
T ss_pred -------------HHHHHHHHHHcCCCccee
Confidence 115557899999987766
No 324
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0039 Score=69.56 Aligned_cols=51 Identities=18% Similarity=0.412 Sum_probs=40.0
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc-EEEeeccccc
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP-FVIADATTLT 367 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~-fv~i~~s~l~ 367 (570)
+..+|++++++++++.=+ ++|++|+||||+.|++-+..... -+.+++.++.
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik 416 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIK 416 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHh
Confidence 445899999999998666 99999999999999999887421 2445665544
No 325
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.87 E-value=0.0037 Score=72.28 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=33.0
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++|++|+|||||++.+++..
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~ 507 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35899999999888555 99999999999999999876
No 326
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.87 E-value=0.00064 Score=72.72 Aligned_cols=38 Identities=34% Similarity=0.677 Sum_probs=34.7
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
...+++++++++.++.++ |.||+||||||+.|+||..-
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456899999999999888 99999999999999999765
No 327
>PHA02624 large T antigen; Provisional
Probab=96.86 E-value=0.0086 Score=68.09 Aligned_cols=126 Identities=25% Similarity=0.230 Sum_probs=70.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
.-++|+||||||||+++.+|.+.++...+.+++..-...-|.|- .....+++||++..-.-.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~p------------------l~D~~~~l~dD~t~~~~~ 493 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGC------------------AIDQFMVVFEDVKGQPAD 493 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhh------------------hhhceEEEeeeccccccc
Confidence 45669999999999999999999966666666433211111111 123357888987544332
Q ss_pred hhhcccCCCCchHHHH--HHHHHHHcCC-eeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccccccc
Q 008329 411 AESLNISRDVSGEGVQ--QALLKMLEGT-VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGF 487 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq--~~LL~~LEg~-~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f 487 (570)
..+. .++..+- +-|...|||. .|++ .+++..-. ++.. ...|.|+|--.+...+. -||...+.|
T Consensus 494 ~~~L-----p~G~~~dNl~~lRn~LDG~V~v~l----d~KH~n~~--q~~~--PPlliT~Ney~iP~T~~-~Rf~~~~~F 559 (647)
T PHA02624 494 NKDL-----PSGQGMNNLDNLRDYLDGSVPVNL----EKKHLNKR--SQIF--PPGIVTMNEYLIPQTVK-ARFAKVLDF 559 (647)
T ss_pred cccC-----CcccccchhhHHHhhcCCCCcccc----chhccCch--hccC--CCeEEeecCcccchhHH-HHHHHhccc
Confidence 1111 0111232 5688999987 6655 22222211 1222 34566676555555554 356666666
Q ss_pred C
Q 008329 488 G 488 (570)
Q Consensus 488 ~ 488 (570)
.
T Consensus 560 ~ 560 (647)
T PHA02624 560 K 560 (647)
T ss_pred c
Confidence 3
No 328
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.85 E-value=0.0034 Score=63.95 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=34.9
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.--+|+++++++..+..+ |+|++|+|||||.+.||..+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 345899999999999999 99999999999999999887
No 329
>PRK06217 hypothetical protein; Validated
Probab=96.83 E-value=0.0011 Score=63.82 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=27.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.|+|.|++|+||||+|+.|++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999998877654
No 330
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.83 E-value=0.0028 Score=68.95 Aligned_cols=86 Identities=16% Similarity=0.289 Sum_probs=47.7
Q ss_pred cccccCC-cEEEECCCCCchHHHHHHHHHHhCCc------EEEeecc---cccc----------cccccchhhH---HHH
Q 008329 325 TVELEKS-NILLMGPTGSGKTLLAKTLARYVNVP------FVIADAT---TLTQ----------AGYVGEDVES---ILY 381 (570)
Q Consensus 325 s~~i~~~-~vLL~GPPGTGKTtLAraLA~~lg~~------fv~i~~s---~l~~----------~g~vGe~~~~---~lr 381 (570)
.+.+.++ .++|+||+|+|||++++.+++.+... ++.+... ++.+ ..-.++.... ...
T Consensus 162 ~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~ 241 (415)
T TIGR00767 162 FAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAE 241 (415)
T ss_pred EEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHH
Confidence 3444444 56699999999999999999876332 1111111 1000 0001111111 112
Q ss_pred HHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 382 KLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 382 ~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
...+.+.......+..||||||++++...
T Consensus 242 ~v~e~Ae~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHHHHHHHcCCCeEEEEEChhHHHHH
Confidence 33334444444567789999999999865
No 331
>PRK13948 shikimate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=64.18 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.0
Q ss_pred ccCCcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 328 LEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 328 i~~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.++.+++|+|.+|+||||+++.+|+.++.+|+..|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34578999999999999999999999999998655
No 332
>PRK14532 adenylate kinase; Provisional
Probab=96.82 E-value=0.0011 Score=63.76 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
+++|.||||+||||+|+.||+.++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 47899999999999999999999876654
No 333
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.00079 Score=68.42 Aligned_cols=35 Identities=34% Similarity=0.635 Sum_probs=33.0
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++++.++..+ |+|++|||||||+++++...
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 789999999999999 99999999999999999765
No 334
>PRK14530 adenylate kinase; Provisional
Probab=96.82 E-value=0.0012 Score=65.13 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=26.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|.||||+||||+|+.||+.++.+++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 468899999999999999999999877653
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.80 E-value=0.0035 Score=78.70 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+|++++++++++..+ ++|++|+|||||++++.+.+
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~ 1336 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN 1336 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 35899999999998777 99999999999999999877
No 336
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.79 E-value=0.0036 Score=59.40 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=23.6
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
+|+.||||||||+++..++... +.+.+.++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999998886543 555555544
No 337
>PRK13949 shikimate kinase; Provisional
Probab=96.78 E-value=0.0012 Score=63.26 Aligned_cols=31 Identities=45% Similarity=0.693 Sum_probs=28.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.++|+|+||+||||+++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 6899999999999999999999998887644
No 338
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.77 E-value=0.0035 Score=70.97 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.++++++++++++..+ ++||+|+||||+++.+++..
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4899999999988776 99999999999999999877
No 339
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.76 E-value=0.0031 Score=71.37 Aligned_cols=37 Identities=35% Similarity=0.641 Sum_probs=33.2
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++..+ ++|++|+|||||++.+++..
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34799999999888776 99999999999999999876
No 340
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.75 E-value=0.0048 Score=61.10 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCCCCCcccccCCc-EEEECCCCCchHHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 319 ~~ld~is~~i~~~~-vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+.+++++....+. ++|.||+|+|||++.+.++..
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45677888887644 459999999999999999743
No 341
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.73 E-value=0.00086 Score=79.11 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=49.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchh------hHHHHHHhhhcchh-HhhhcCeEEEEcch
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV------ESILYKLLTVSDYN-VAAAQQGIVYIDEV 404 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~------~~~lr~lf~~a~~~-v~~~~~gILfIDEI 404 (570)
.++++||||+|||+.|.++|..++..+++.++++.. +++...+. ...+...+...... -......||++||+
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~dev 437 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEV 437 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccccccceeEEEEecc
Confidence 468999999999999999999999999999998866 33222110 00111111000000 00123459999999
Q ss_pred hhhhh
Q 008329 405 DKITK 409 (570)
Q Consensus 405 D~L~~ 409 (570)
|.+..
T Consensus 438 D~~~~ 442 (871)
T KOG1968|consen 438 DGMFG 442 (871)
T ss_pred ccccc
Confidence 99986
No 342
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.72 E-value=0.008 Score=65.91 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=47.3
Q ss_pred CCcEEEECCCCCchHHHHHHHHHH--h-CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhh
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARY--V-NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDK 406 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~--l-g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~ 406 (570)
..++++.||+|||||.+|.+++.. + ..-+ ++.+ +.+.++-...-.. -...-+|+|||+..
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f--~T~a-------------~Lf~~L~~~~lg~--v~~~DlLI~DEvgy 271 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGT--ITVA-------------KLFYNISTRQIGL--VGRWDVVAFDEVAT 271 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCc--CcHH-------------HHHHHHHHHHHhh--hccCCEEEEEcCCC
Confidence 369999999999999999998766 2 1111 1111 2222221111001 13456899999988
Q ss_pred hhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 407 ITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 407 L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+.-... ...++.|..-|+.
T Consensus 272 lp~~~~----------~~~v~imK~yMes 290 (449)
T TIGR02688 272 LKFAKP----------KELIGILKNYMES 290 (449)
T ss_pred CcCCch----------HHHHHHHHHHHHh
Confidence 664321 2267778888883
No 343
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.72 E-value=0.0027 Score=71.24 Aligned_cols=37 Identities=41% Similarity=0.660 Sum_probs=34.4
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |+|++||||||+||+|++..
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999 99999999999999999977
No 344
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.72 E-value=0.0015 Score=62.18 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.7
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEEeeccc
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~ 365 (570)
++++||||+||||+|+.||+.++... ++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECCh
Confidence 67999999999999999999998644 44444
No 345
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.71 E-value=0.007 Score=68.81 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=30.5
Q ss_pred CCCCCCcccccCC-cEEEECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~-~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.-+++.++.++++ .+|+.||+|||||+|.|+||...
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5677788887776 56699999999999999999876
No 346
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.70 E-value=0.0052 Score=60.09 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=25.0
Q ss_pred CCCcccccCC--cEEEECCCCCchHHHHHHHH
Q 008329 322 DDDTVELEKS--NILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 322 d~is~~i~~~--~vLL~GPPGTGKTtLAraLA 351 (570)
-.+++++.++ .++|+||+|+||||+.+.++
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3456777766 37799999999999999998
No 347
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.70 E-value=0.01 Score=60.25 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
+.+.|+|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 45669999999999999999976
No 348
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0011 Score=70.70 Aligned_cols=35 Identities=29% Similarity=0.602 Sum_probs=32.6
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++++..+.++ |.||+||||||+.|.||...
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999877 99999999999999999876
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.021 Score=63.03 Aligned_cols=37 Identities=41% Similarity=0.562 Sum_probs=28.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
+..++|+|++|+||||++..+|..+ +..+..+++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4577799999999999999999777 455555555443
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.67 E-value=0.0017 Score=60.01 Aligned_cols=27 Identities=44% Similarity=0.840 Sum_probs=24.0
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
++|.|+||+||||+|+.+++.++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 579999999999999999999877654
No 351
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.67 E-value=0.0042 Score=72.16 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++||+|+||||++++|++.+
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35899999999988777 99999999999999999887
No 352
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.67 E-value=0.0026 Score=63.98 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.8
Q ss_pred CCcEEEECCCCCchHHHHHHHH
Q 008329 330 KSNILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA 351 (570)
+..+||+|+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568899999999999999987
No 353
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.67 E-value=0.0018 Score=62.02 Aligned_cols=28 Identities=46% Similarity=0.762 Sum_probs=25.0
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
++++||||+||||+|+.||+.++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999998876654
No 354
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.66 E-value=0.0018 Score=58.87 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=26.9
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
+.+.|+||+||||+|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 579999999999999999999999887654
No 355
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.66 E-value=0.0016 Score=61.10 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=24.0
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
++|.||+|+||||+|+.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999999986664
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.65 E-value=0.0051 Score=57.63 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=27.3
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
++|.|+||+||||+|+.+++.+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 5799999999999999999988 555566665443
No 357
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.65 E-value=0.025 Score=61.11 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=48.7
Q ss_pred hhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 275 L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+...|.+.+.+++.|...+.+. +. .-+.++.|+|-.|||||.+.+.+-+..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~----------------------------~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNN----------------------------SC-TIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred cccCccchHHHHHHHHHHhCCC----------------------------Cc-ccceeEEEeccCCCchhHHHHHHHhhc
Confidence 4456889999999999888310 00 123677899999999999999999999
Q ss_pred CCcEEEeeccc
Q 008329 355 NVPFVIADATT 365 (570)
Q Consensus 355 g~~fv~i~~s~ 365 (570)
+.+.+.+++-+
T Consensus 55 n~~~vw~n~~e 65 (438)
T KOG2543|consen 55 NLENVWLNCVE 65 (438)
T ss_pred CCcceeeehHH
Confidence 99988888765
No 358
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.64 E-value=0.0021 Score=61.74 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=29.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
..++|+|++|+||||+++.+|+.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 578999999999999999999999988876553
No 359
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.64 E-value=0.00098 Score=65.44 Aligned_cols=36 Identities=28% Similarity=0.562 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4789999999999777 99999999999999999876
No 360
>PRK14531 adenylate kinase; Provisional
Probab=96.64 E-value=0.002 Score=62.11 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++++||||+||||+++.||+.++.+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 468999999999999999999999877653
No 361
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.63 E-value=0.0049 Score=69.76 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=33.3
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++..+ ++|++|+|||||++.+++.+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34899999999888766 99999999999999999887
No 362
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0013 Score=65.93 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=33.4
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHH
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~ 353 (570)
...+|+++++++.++.++ ++||+|+||||+.|+|...
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999888 9999999999999999854
No 363
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0027 Score=66.86 Aligned_cols=37 Identities=41% Similarity=0.679 Sum_probs=35.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
-+++++++++..+.+| |+|++|||||+++++|.+.+.
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4789999999999999 999999999999999999986
No 364
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0017 Score=62.99 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=29.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.+++|+|++|+||||+.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57899999999999999999999999997544
No 365
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.61 E-value=0.0087 Score=58.96 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.+++++... .-++|+||+|+||||+.++|+...
T Consensus 15 ~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 15 RVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHH
Confidence 34566666654 455699999999999999998543
No 366
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0033 Score=66.28 Aligned_cols=37 Identities=38% Similarity=0.741 Sum_probs=33.1
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++..+.++ ++|=+|+|||||.|++-+..
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi 78 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI 78 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC
Confidence 45678999999999888 99999999999999998766
No 367
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.60 E-value=0.017 Score=56.68 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=22.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+-+++.||+|+||||+++++++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5678999999999999999988774
No 368
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.60 E-value=0.0012 Score=63.55 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999875
No 369
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.59 E-value=0.0013 Score=65.60 Aligned_cols=36 Identities=22% Similarity=0.619 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999777 99999999999999999875
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.58 E-value=0.00073 Score=61.11 Aligned_cols=34 Identities=35% Similarity=0.693 Sum_probs=29.1
Q ss_pred CCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 321 ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
|+++++.+.++.++ |+|++|+|||||.++|+...
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccc
Confidence 35678888888666 99999999999999999876
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=96.58 E-value=0.014 Score=62.30 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=24.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
.-++|+||||+||||++..+|..+ +..+..+++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 456699999999999999888766 344444444
No 372
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.58 E-value=0.0013 Score=64.30 Aligned_cols=36 Identities=31% Similarity=0.633 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998877 99999999999999999876
No 373
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.047 Score=59.18 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=20.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+.++|+||+|+||||++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999998764
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.56 E-value=0.011 Score=72.68 Aligned_cols=139 Identities=16% Similarity=0.228 Sum_probs=85.2
Q ss_pred CCCCCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCC--cEEEeeccccccc---------ccccchh-----
Q 008329 314 SSCTTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLTQA---------GYVGEDV----- 376 (570)
Q Consensus 314 ~~~~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~l~~~---------g~vGe~~----- 376 (570)
.+..+.+|+++++.+.++.-+ ++|-+|+|||+|+.++-+.... --+.+|+-++... +.+.+++
T Consensus 1149 rp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG 1228 (1381)
T KOG0054|consen 1149 RPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG 1228 (1381)
T ss_pred CCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC
Confidence 344567999999999998777 9999999999999999988741 1244555443321 1111110
Q ss_pred -------------hHHHHHHhhhc---------ch-----------h-------------HhhhcCeEEEEcchhhhhhh
Q 008329 377 -------------ESILYKLLTVS---------DY-----------N-------------VAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 377 -------------~~~lr~lf~~a---------~~-----------~-------------v~~~~~gILfIDEID~L~~~ 410 (570)
.+.+.+.++.+ +. + .--.+..||+|||+.+....
T Consensus 1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 11111111111 00 0 01245679999998876655
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCC
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGA 468 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn 468 (570)
.++ .-+|+++.+...+-+|.+ ..++-..++|.++++++-.|.
T Consensus 1309 ~TD---------~lIQ~tIR~~F~dcTVlt-------IAHRl~TVmd~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1309 ETD---------ALIQKTIREEFKDCTVLT-------IAHRLNTVMDSDRVLVLDAGR 1350 (1381)
T ss_pred HHH---------HHHHHHHHHHhcCCeEEE-------EeeccchhhhcCeEEEeeCCe
Confidence 332 348899999998765544 234444567777777775443
No 375
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.56 E-value=0.0013 Score=65.05 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++.+.++.++ |.||+|+|||||.+.|+...
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 578999999999888 99999999999999999765
No 376
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.55 E-value=0.0026 Score=60.07 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=28.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
..++|+|++|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36889999999999999999999999987543
No 377
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.55 E-value=0.0014 Score=64.20 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.55 E-value=0.037 Score=60.99 Aligned_cols=35 Identities=34% Similarity=0.426 Sum_probs=27.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~ 365 (570)
.-++|+|++|+||||++..+|..+ +..+..+++..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 456699999999999999999777 55666566543
No 379
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.54 E-value=0.0052 Score=68.56 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.++++++++++++..+ ++||+|+|||||++.+++..
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999998776 99999999999999999876
No 380
>PRK13946 shikimate kinase; Provisional
Probab=96.53 E-value=0.0023 Score=61.77 Aligned_cols=33 Identities=36% Similarity=0.706 Sum_probs=29.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
+..++|+|.+|+||||+++.+|+.++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 367999999999999999999999999987544
No 381
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.52 E-value=0.0017 Score=64.31 Aligned_cols=36 Identities=33% Similarity=0.638 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999877 99999999999999999986
No 382
>PTZ00243 ABC transporter; Provisional
Probab=96.52 E-value=0.0061 Score=76.73 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+.+|+++++.++++..+ ++|++|+|||||+++|.+.+
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~ 1360 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV 1360 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45899999999988777 99999999999999999877
No 383
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.52 E-value=0.0022 Score=61.28 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=27.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
.-++|.|+||+||||+|+.+++.++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 457799999999999999999998777664443
No 384
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0014 Score=65.17 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999777 99999999999999999875
No 385
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0015 Score=64.87 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 386
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.49 E-value=0.0015 Score=63.41 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++++..+
T Consensus 12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999988777 99999999999999999876
No 387
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.49 E-value=0.0014 Score=64.35 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999998777 99999999999999999876
No 388
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.47 E-value=0.0098 Score=58.18 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=21.4
Q ss_pred ccccCC-cEEEECCCCCchHHHHHHHHH
Q 008329 326 VELEKS-NILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 326 ~~i~~~-~vLL~GPPGTGKTtLAraLA~ 352 (570)
+.+.++ .++|+||+|+||||+.++++.
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 333344 566999999999999999993
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0014 Score=64.12 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999877 99999999999999999865
No 390
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.47 E-value=0.0016 Score=64.02 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999776 99999999999999999876
No 391
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0014 Score=65.24 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999999877 99999999999999999876
No 392
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.46 E-value=0.0018 Score=63.35 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999988777 99999999999999999876
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.46 E-value=0.018 Score=59.23 Aligned_cols=25 Identities=44% Similarity=0.541 Sum_probs=21.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.+++.||+|+||||+++++...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5688999999999999999877663
No 394
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.46 E-value=0.0016 Score=63.71 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999776 99999999999999999876
No 395
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0018 Score=63.50 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999875
No 396
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.46 E-value=0.0015 Score=63.98 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3789999999998777 99999999999999999875
No 397
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.45 E-value=0.0016 Score=63.46 Aligned_cols=36 Identities=42% Similarity=0.616 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999988777 99999999999999999876
No 398
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0028 Score=60.34 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=27.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.++|+.|-|||||||++..+|...+.+++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~ 37 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIE 37 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEe
Confidence 699999999999999999999999987764
No 399
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.44 E-value=0.0031 Score=59.93 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=24.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
.-+++.||||+||||+|+.+++.++...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35669999999999999999999876544
No 400
>PRK06762 hypothetical protein; Provisional
Probab=96.44 E-value=0.0029 Score=59.52 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l 366 (570)
.-++|.|+||+||||+|+.+++.++...+.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 356799999999999999999998655655554443
No 401
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0016 Score=62.36 Aligned_cols=36 Identities=33% Similarity=0.634 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999998888 99999999999999999775
No 402
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.43 E-value=0.0018 Score=63.40 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999876
No 403
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0017 Score=63.46 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=31.8
Q ss_pred CCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.+.|.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 14 RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999998855599999999999999999875
No 404
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0017 Score=64.07 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999875
No 405
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.39 E-value=0.0046 Score=58.09 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEEeeccc
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~ 365 (570)
|.|+|++|||||||++.|++. |.+++.-.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHH
Confidence 689999999999999999998 87766433333
No 406
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.38 E-value=0.0063 Score=62.03 Aligned_cols=51 Identities=20% Similarity=0.377 Sum_probs=40.7
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCC--cEEEeeccccc
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~l~ 367 (570)
...++|+++++++++.++ +.||+|+|||++.|.|...+-- --+.+.+.++.
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~ 73 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIP 73 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchh
Confidence 456899999999999999 9999999999999999987721 13445555543
No 407
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.38 E-value=0.0018 Score=63.69 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999999888 99999999999999999875
No 408
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.37 E-value=0.0019 Score=64.07 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999876
No 409
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.37 E-value=0.0021 Score=63.81 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999877 99999999999999999865
No 410
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.37 E-value=0.0021 Score=63.75 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999875
No 411
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.37 E-value=0.0019 Score=64.28 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3789999999988777 99999999999999999876
No 412
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.37 E-value=0.0021 Score=63.36 Aligned_cols=36 Identities=33% Similarity=0.622 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999766 99999999999999999876
No 413
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.0022 Score=64.45 Aligned_cols=36 Identities=36% Similarity=0.683 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999875
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.36 E-value=0.011 Score=57.19 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=17.9
Q ss_pred EEEECCCCCchHHHHHHHH
Q 008329 333 ILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA 351 (570)
++|+||+|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 5799999999999999998
No 415
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.35 E-value=0.0017 Score=63.78 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999777 99999999999999999875
No 416
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.002 Score=64.48 Aligned_cols=36 Identities=33% Similarity=0.639 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 16 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999875
No 417
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.35 E-value=0.0022 Score=63.92 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3789999999998777 99999999999999999876
No 418
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.33 E-value=0.011 Score=74.09 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.2
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+.+|+++++.++++.-+ ++|++|+|||||+++|.+..
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 356899999999988766 99999999999999999886
No 419
>PRK02496 adk adenylate kinase; Provisional
Probab=96.33 E-value=0.0035 Score=60.07 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=25.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+++.||||+||||+|+.||+.++.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 47899999999999999999999876653
No 420
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.33 E-value=0.0019 Score=68.20 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=34.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |+||+|+|||||+++|++.+.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4799999999999888 999999999999999998763
No 421
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.32 E-value=0.0025 Score=62.71 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 18 PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3789999999999877 99999999999999999875
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.32 E-value=0.012 Score=59.15 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCCCCCcccccCCc-EEEECCCCCchHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 319 ~~ld~is~~i~~~~-vLL~GPPGTGKTtLAraLA~ 352 (570)
.+..++++...++. ++|.||+|+|||++.+.++.
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567777776554 56999999999999999987
No 423
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.002 Score=64.13 Aligned_cols=36 Identities=22% Similarity=0.454 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999876
No 424
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.31 E-value=0.0026 Score=63.30 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=31.2
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
+++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357888998888776 999999999999999998763
No 425
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0052 Score=61.17 Aligned_cols=37 Identities=27% Similarity=0.650 Sum_probs=32.6
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++..+ +.||+||||||+.+.+|...
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 45788999999888776 99999999999999999876
No 426
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.31 E-value=0.0038 Score=63.05 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=26.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.++|.||||+||||+|+.+|+.++.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48899999999999999999999877654
No 427
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.31 E-value=0.0025 Score=64.02 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999998777 99999999999999999875
No 428
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0024 Score=63.36 Aligned_cols=36 Identities=28% Similarity=0.596 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999777 99999999999999999876
No 429
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.0023 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++++...
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999998777 99999999999999999876
No 430
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.30 E-value=0.0031 Score=55.61 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=20.6
Q ss_pred EEEECCCCCchHHHHHHHHHHh
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l 354 (570)
|+|.|+||+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986
No 431
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.30 E-value=0.028 Score=61.24 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=41.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT 408 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~ 408 (570)
.+++.||-.|||||+++.+.+.....++.++.-+..... ....+..+....... .....+|||||+.+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~~~~~-----~~~~yifLDEIq~v~ 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYIELKE-----REKSYIFLDEIQNVP 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHHHhhc-----cCCceEEEecccCch
Confidence 577999999999999999988875545545544433111 111111111111111 145799999999875
No 432
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.29 E-value=0.0028 Score=61.41 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~ 352 (570)
.+++++++++.++.++ |.||+|+|||||.+++..
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999998877 999999999999999963
No 433
>PRK14528 adenylate kinase; Provisional
Probab=96.29 E-value=0.0041 Score=60.38 Aligned_cols=29 Identities=41% Similarity=0.746 Sum_probs=26.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+++.||||+||||+|+.+++.++.+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 58899999999999999999999877654
No 434
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.29 E-value=0.0023 Score=63.32 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=32.4
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 689999999988777 99999999999999999876
No 435
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.29 E-value=0.008 Score=57.51 Aligned_cols=36 Identities=39% Similarity=0.570 Sum_probs=30.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~ 367 (570)
-++|+|.+|+||||+|+++.+.+ +.+.+.+++..+.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 46699999999999999999887 7788889988765
No 436
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.28 E-value=0.0028 Score=62.39 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999777 99999999999999999875
No 437
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0037 Score=60.20 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=28.3
Q ss_pred cCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 521 YGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 521 ~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
||++..=++-|+.++.-..++.++...||....
T Consensus 138 YgIDidDlSiyDLVinTs~~~~~~v~~il~~ai 170 (179)
T COG1102 138 YGIDIDDLSIYDLVINTSKWDPEEVFLILLDAI 170 (179)
T ss_pred hCCCCccceeeEEEEecccCCHHHHHHHHHHHH
Confidence 567777799999999999999999999987643
No 438
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0025 Score=62.88 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999988777 99999999999999999875
No 439
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.28 E-value=0.0075 Score=63.33 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=28.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
..++|+|++|||||++++.+|+.++.+++..+
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 57889999999999999999999999998544
No 440
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.27 E-value=0.0026 Score=57.18 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCCCCCcccccCCc-EEEECCCCCchHHHHHHHH
Q 008329 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 319 ~~ld~is~~i~~~~-vLL~GPPGTGKTtLAraLA 351 (570)
.+++++++++.++. +.|.||+|+|||||++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35788889888754 5599999999999999987
No 441
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0027 Score=63.97 Aligned_cols=36 Identities=22% Similarity=0.613 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999999999777 99999999999999999975
No 442
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.27 E-value=0.0093 Score=58.17 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=25.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~ 365 (570)
-++++||||+|||+++..++... +...+.++..+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44599999999999999887544 55666666654
No 443
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.004 Score=63.05 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=34.0
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.++|+++++++..+.+. +.||+|+||||||.+|+..-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999988 999999999999999986543
No 444
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.27 E-value=0.02 Score=64.36 Aligned_cols=37 Identities=27% Similarity=0.537 Sum_probs=32.6
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++.++++..+ ++|++|+|||||++++++..
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34799999999777665 99999999999999999887
No 445
>PF13245 AAA_19: Part of AAA domain
Probab=96.26 E-value=0.0069 Score=50.92 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=18.2
Q ss_pred CcEEEECCCCCchH-HHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKT-LLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKT-tLAraLA~~l 354 (570)
+-+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34557999999999 6666777665
No 446
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.26 E-value=0.04 Score=57.08 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
-.+.|.|+=|+|||++.+.+-+.+...
T Consensus 21 ~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 21 FVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345599999999999999998777433
No 447
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0028 Score=62.74 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999998766 99999999999999999876
No 448
>PRK10908 cell division protein FtsE; Provisional
Probab=96.25 E-value=0.0023 Score=63.15 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998877 99999999999999999876
No 449
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.24 E-value=0.0024 Score=63.79 Aligned_cols=36 Identities=31% Similarity=0.589 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999888 99999999999999999775
No 450
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0028 Score=63.89 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999777 99999999999999999875
No 451
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.23 E-value=0.0025 Score=61.22 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999988776 99999999999999999876
No 452
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.23 E-value=0.0031 Score=62.85 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=32.4
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999766 99999999999999999873
No 453
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.23 E-value=0.0025 Score=62.22 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999988777 99999999999999999865
No 454
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0028 Score=64.32 Aligned_cols=36 Identities=25% Similarity=0.612 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999877 99999999999999999875
No 455
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0031 Score=63.63 Aligned_cols=37 Identities=30% Similarity=0.622 Sum_probs=33.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4789999999999777 999999999999999998763
No 456
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0024 Score=64.88 Aligned_cols=36 Identities=36% Similarity=0.706 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999875
No 457
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.23 E-value=0.0028 Score=63.13 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999988777 99999999999999999876
No 458
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0025 Score=63.71 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999888776 99999999999999999875
No 459
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0025 Score=60.74 Aligned_cols=36 Identities=39% Similarity=0.680 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++++...
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999998777 99999999999999999875
No 460
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.22 E-value=0.0027 Score=62.10 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 461
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.22 E-value=0.0024 Score=64.37 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999876
No 462
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.22 E-value=0.0027 Score=62.33 Aligned_cols=36 Identities=31% Similarity=0.563 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+...
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999988766 99999999999999999875
No 463
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0033 Score=63.31 Aligned_cols=36 Identities=31% Similarity=0.647 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999998777 99999999999999999864
No 464
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.21 E-value=0.0036 Score=62.95 Aligned_cols=38 Identities=29% Similarity=0.598 Sum_probs=33.7
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
...+|++|++++++..|- |+||+||||||+.|++-+..
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 456889999999999888 99999999999999997654
No 465
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.20 E-value=0.0029 Score=61.66 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ +.||+|+|||||++.|+...
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 4789999999999877 99999999999999999876
No 466
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.20 E-value=0.0031 Score=62.51 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
..+++++++++.++.++ |.||+|+|||||+++|+..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 45789999999988777 999999999999999998763
No 467
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0036 Score=62.89 Aligned_cols=37 Identities=24% Similarity=0.528 Sum_probs=33.2
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+....
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999998777 999999999999999998753
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.20 E-value=0.0027 Score=62.29 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999875
No 469
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.20 E-value=0.013 Score=63.46 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
...+++||+|||||++++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999877
No 470
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.20 E-value=0.0027 Score=62.64 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999876
No 471
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.20 E-value=0.0081 Score=63.67 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeeccccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLT 367 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~ 367 (570)
..++|.|++|+|||||++.+++.++.+++.-.+.++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 4688999999999999999999999888665554433
No 472
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.20 E-value=0.011 Score=61.30 Aligned_cols=25 Identities=40% Similarity=0.630 Sum_probs=22.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.++++.||+|+||||+.+++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5889999999999999999998873
No 473
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.19 E-value=0.0027 Score=63.43 Aligned_cols=36 Identities=19% Similarity=0.577 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999988777 99999999999999999876
No 474
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.18 E-value=0.0034 Score=62.03 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4789999999998777 99999999999999999876
No 475
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.18 E-value=0.02 Score=66.86 Aligned_cols=89 Identities=20% Similarity=0.310 Sum_probs=49.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---C--CcEEEeecccccc---cccccchhhHHHHHHhhhcchh------HhhhcC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---N--VPFVIADATTLTQ---AGYVGEDVESILYKLLTVSDYN------VAAAQQ 396 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g--~~fv~i~~s~l~~---~g~vGe~~~~~lr~lf~~a~~~------v~~~~~ 396 (570)
+-+++.|+||||||++++++...+ + .+++....+.... ....|.. ...+..++...... -.....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLT-ASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCc-cccHHHHhhccCCccchhhhhccccC
Confidence 467799999999999999997766 3 3333333222110 0011211 22233333221110 001245
Q ss_pred eEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 397 GIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 397 gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
.+|++||+-.+... ....|++.+.
T Consensus 418 ~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 418 DLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred CEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 79999999888654 5666777665
No 476
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.0028 Score=61.73 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+||||++++|+...
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999888777 99999999999999999876
No 477
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.17 E-value=0.014 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.7
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
+.++|+||+|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4578999999999999999983
No 478
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0028 Score=63.49 Aligned_cols=36 Identities=39% Similarity=0.703 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999888 99999999999999999875
No 479
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0034 Score=63.62 Aligned_cols=36 Identities=22% Similarity=0.558 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999988776 99999999999999999875
No 480
>PRK06547 hypothetical protein; Provisional
Probab=96.16 E-value=0.0049 Score=59.55 Aligned_cols=31 Identities=39% Similarity=0.483 Sum_probs=25.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..+++.|++|+||||+|+.+++.++.+++..
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 3566889999999999999999988776543
No 481
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.16 E-value=0.0028 Score=61.61 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+...
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999777 99999999999999999875
No 482
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.16 E-value=0.016 Score=58.11 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=27.4
Q ss_pred CCCCCCcccccCCc-EEEECCCCCchHHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 319 ~~ld~is~~i~~~~-vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+.++++++..++. ++|.||+|+|||++.+.++..
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 34577788875554 459999999999999998744
No 483
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.16 E-value=0.0032 Score=63.29 Aligned_cols=36 Identities=28% Similarity=0.646 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3789999999999888 99999999999999999876
No 484
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.16 E-value=0.005 Score=60.59 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=25.0
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
+++.||||+||||+|+.||+.++.+.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876654
No 485
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0028 Score=63.41 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999875
No 486
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.14 E-value=0.0028 Score=66.02 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999887 99999999999999999876
No 487
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.1 Score=56.83 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=21.6
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+..++|+||+|+||||++.-+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999998765
No 488
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.13 E-value=0.0031 Score=60.51 Aligned_cols=36 Identities=39% Similarity=0.687 Sum_probs=32.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+||||++++|+..+
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3789999999988777 99999999999999999876
No 489
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0034 Score=62.43 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3789999999998777 99999999999999999876
No 490
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0032 Score=64.32 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3789999999999777 99999999999999999876
No 491
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.12 E-value=0.0041 Score=60.75 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ +.||+|+|||||+++|+...
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999998777 99999999999999999875
No 492
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.12 E-value=0.0035 Score=62.53 Aligned_cols=34 Identities=18% Similarity=0.474 Sum_probs=29.7
Q ss_pred CCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 321 ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778888888777 99999999999999999876
No 493
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.014 Score=57.15 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=31.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLT 367 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~ 367 (570)
-+.|+|.+|+||||+|.++.+.+ |...+.+|+..+.
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 45599999999999999999887 7888889988755
No 494
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0033 Score=64.49 Aligned_cols=36 Identities=33% Similarity=0.606 Sum_probs=33.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ ++||+|+|||||.+++...+
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999998 99999999999999999866
No 495
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.12 E-value=0.0034 Score=61.79 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+...
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999988777 99999999999999999876
No 496
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.12 E-value=0.0056 Score=60.46 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=25.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.++++||||+||||+|+.||+.++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999999876654
No 497
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0034 Score=63.15 Aligned_cols=36 Identities=33% Similarity=0.615 Sum_probs=32.4
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+...
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999999998777 99999999999999999764
No 498
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.11 E-value=0.0043 Score=62.68 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=33.8
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++.+.++.++ ++||+|||||||...++...
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999888 99999999999999999765
No 499
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0039 Score=63.60 Aligned_cols=37 Identities=30% Similarity=0.651 Sum_probs=33.0
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34789999999999877 99999999999999999864
No 500
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0032 Score=63.22 Aligned_cols=36 Identities=33% Similarity=0.642 Sum_probs=32.6
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999988777 99999999999999999875
Done!