Query 008329
Match_columns 570
No_of_seqs 337 out of 3398
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 23:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 1.9E-30 6.5E-35 270.5 18.0 265 264-551 2-267 (363)
2 1um8_A ATP-dependent CLP prote 100.0 6.9E-28 2.4E-32 252.0 22.0 270 263-551 7-284 (376)
3 1g41_A Heat shock protein HSLU 99.9 1.6E-26 5.6E-31 249.3 18.8 224 265-565 3-366 (444)
4 4b4t_J 26S protease regulatory 99.9 1.6E-24 5.5E-29 231.1 15.6 213 278-553 149-366 (405)
5 4b4t_I 26S protease regulatory 99.9 1.2E-23 4E-28 225.7 13.3 213 278-553 183-400 (437)
6 4b4t_H 26S protease regulatory 99.9 3.3E-23 1.1E-27 223.9 15.3 171 278-494 210-384 (467)
7 4b4t_L 26S protease subunit RP 99.9 4.4E-23 1.5E-27 222.3 15.6 213 278-553 182-399 (437)
8 4b4t_K 26S protease regulatory 99.9 7.8E-23 2.7E-27 219.9 15.1 212 278-552 173-390 (428)
9 4b4t_M 26S protease regulatory 99.9 4.8E-23 1.7E-27 221.8 12.9 213 278-553 182-399 (434)
10 3cf2_A TER ATPase, transitiona 99.8 2.7E-21 9.2E-26 221.7 8.4 172 279-494 479-652 (806)
11 1ofh_A ATP-dependent HSL prote 99.8 1.6E-19 5.5E-24 180.9 19.4 210 265-551 3-213 (310)
12 3cf2_A TER ATPase, transitiona 99.8 1.2E-19 4E-24 208.1 10.3 168 278-494 205-376 (806)
13 1xwi_A SKD1 protein; VPS4B, AA 99.8 8.3E-18 2.8E-22 173.5 18.3 213 278-553 13-227 (322)
14 3eie_A Vacuolar protein sortin 99.8 6.8E-18 2.3E-22 173.3 15.7 211 279-553 20-232 (322)
15 1r6b_X CLPA protein; AAA+, N-t 99.8 1.3E-17 4.4E-22 189.6 19.1 207 268-553 449-666 (758)
16 3cf0_A Transitional endoplasmi 99.7 9.9E-18 3.4E-22 170.8 15.7 171 278-494 16-190 (301)
17 4fcw_A Chaperone protein CLPB; 99.7 3.2E-17 1.1E-21 165.1 18.6 208 268-553 8-229 (311)
18 3syl_A Protein CBBX; photosynt 99.7 2.8E-17 9.6E-22 165.6 15.6 189 266-552 20-216 (309)
19 2qp9_X Vacuolar protein sortin 99.7 3.3E-17 1.1E-21 171.3 15.6 213 278-553 52-265 (355)
20 3h4m_A Proteasome-activating n 99.7 1.6E-16 5.4E-21 158.6 16.8 171 278-494 18-192 (285)
21 2ce7_A Cell division protein F 99.7 8.9E-17 3.1E-21 175.0 15.7 172 278-494 17-190 (476)
22 2x8a_A Nuclear valosin-contain 99.7 3.9E-17 1.3E-21 165.1 11.8 169 279-494 12-182 (274)
23 3vfd_A Spastin; ATPase, microt 99.7 1.9E-16 6.7E-21 166.6 16.5 213 278-553 116-330 (389)
24 2zan_A Vacuolar protein sortin 99.7 1E-16 3.5E-21 172.4 14.1 210 278-553 135-349 (444)
25 1lv7_A FTSH; alpha/beta domain 99.7 4.8E-16 1.7E-20 153.5 17.6 172 278-494 13-186 (257)
26 3d8b_A Fidgetin-like protein 1 99.7 3.7E-16 1.3E-20 163.1 17.3 214 278-553 85-299 (357)
27 3hu3_A Transitional endoplasmi 99.7 1E-16 3.6E-21 174.9 12.5 168 278-494 205-376 (489)
28 3b9p_A CG5977-PA, isoform A; A 99.7 5.4E-16 1.9E-20 155.8 16.5 215 278-553 22-237 (297)
29 2dhr_A FTSH; AAA+ protein, hex 99.7 7.9E-16 2.7E-20 168.5 17.8 172 278-494 32-205 (499)
30 2qz4_A Paraplegin; AAA+, SPG7, 99.7 5.9E-16 2E-20 151.8 15.0 216 278-553 7-226 (262)
31 3pxi_A Negative regulator of g 99.7 3.7E-16 1.3E-20 178.0 15.3 190 269-553 483-675 (758)
32 3t15_A Ribulose bisphosphate c 99.7 1.8E-16 6.3E-21 161.3 10.7 148 330-488 36-185 (293)
33 3m6a_A ATP-dependent protease 99.6 3.1E-16 1.1E-20 173.0 11.7 177 266-492 70-255 (543)
34 1qvr_A CLPB protein; coiled co 99.6 1.8E-15 6.2E-20 174.8 16.1 205 271-553 552-770 (854)
35 3pfi_A Holliday junction ATP-d 99.6 1.4E-14 4.9E-19 148.1 18.1 155 278-491 30-185 (338)
36 1iy2_A ATP-dependent metallopr 99.6 5E-15 1.7E-19 148.5 13.8 172 278-494 41-214 (278)
37 1ypw_A Transitional endoplasmi 99.6 5.5E-17 1.9E-21 186.7 -1.8 172 278-494 478-652 (806)
38 2r62_A Cell division protease 99.6 1.8E-16 6.1E-21 157.0 1.9 171 279-494 13-187 (268)
39 1ixz_A ATP-dependent metallopr 99.6 1.1E-14 3.9E-19 143.3 13.5 171 279-494 18-190 (254)
40 2r44_A Uncharacterized protein 99.6 5.2E-15 1.8E-19 151.3 10.7 179 268-552 18-197 (331)
41 2c9o_A RUVB-like 1; hexameric 99.6 3.9E-15 1.3E-19 160.4 8.2 106 278-414 38-145 (456)
42 3pvs_A Replication-associated 99.5 4.2E-14 1.4E-18 152.7 13.0 149 278-553 27-178 (447)
43 1jbk_A CLPB protein; beta barr 99.5 4.5E-14 1.5E-18 129.4 11.0 163 277-550 22-195 (195)
44 1hqc_A RUVB; extended AAA-ATPa 99.5 2.9E-13 9.8E-18 136.9 17.8 157 278-492 13-170 (324)
45 1d2n_A N-ethylmaleimide-sensit 99.5 4.5E-14 1.5E-18 140.6 9.5 131 331-491 65-199 (272)
46 3n70_A Transport activator; si 99.5 5.8E-14 2E-18 128.0 9.3 124 278-483 2-128 (145)
47 1ypw_A Transitional endoplasmi 99.5 1E-13 3.6E-18 159.5 12.2 170 278-494 205-376 (806)
48 2bjv_A PSP operon transcriptio 99.5 2.7E-13 9.4E-18 134.3 13.5 137 279-470 8-151 (265)
49 3u61_B DNA polymerase accessor 99.5 1.5E-13 5.1E-18 139.9 11.2 105 278-435 27-132 (324)
50 3f9v_A Minichromosome maintena 99.5 2.6E-14 8.8E-19 159.5 6.0 200 268-549 286-485 (595)
51 1g8p_A Magnesium-chelatase 38 99.5 6.9E-13 2.4E-17 135.3 15.9 147 331-551 46-230 (350)
52 3uk6_A RUVB-like 2; hexameric 99.4 1E-12 3.5E-17 135.5 15.8 62 278-366 45-108 (368)
53 1ojl_A Transcriptional regulat 99.4 3.2E-13 1.1E-17 138.3 10.2 149 278-482 3-158 (304)
54 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.1E-12 3.9E-17 143.6 14.6 124 268-440 13-140 (500)
55 2chg_A Replication factor C sm 99.4 2.4E-12 8.3E-17 120.5 14.6 105 278-434 18-127 (226)
56 2p65_A Hypothetical protein PF 99.4 6.6E-13 2.3E-17 121.8 8.5 117 277-434 22-149 (187)
57 3pxg_A Negative regulator of g 99.4 1.2E-12 4.2E-17 141.6 10.3 148 278-553 181-338 (468)
58 3co5_A Putative two-component 99.3 3.6E-13 1.2E-17 122.6 3.7 112 278-470 5-116 (143)
59 1njg_A DNA polymerase III subu 99.3 2.2E-11 7.6E-16 114.9 15.6 105 278-435 24-152 (250)
60 1iqp_A RFCS; clamp loader, ext 99.3 5.6E-12 1.9E-16 126.7 11.9 106 278-435 26-136 (327)
61 1sxj_D Activator 1 41 kDa subu 99.3 1.7E-12 6E-17 132.3 7.7 108 278-435 38-159 (353)
62 3pxi_A Negative regulator of g 99.3 4.4E-12 1.5E-16 144.5 10.8 148 278-553 181-338 (758)
63 1qvr_A CLPB protein; coiled co 99.3 4.4E-12 1.5E-16 146.6 10.9 164 278-553 171-345 (854)
64 2gno_A DNA polymerase III, gam 99.3 1.1E-11 3.6E-16 127.6 11.4 102 281-435 1-108 (305)
65 2chq_A Replication factor C sm 99.3 7.1E-12 2.4E-16 125.5 9.0 106 278-435 18-128 (319)
66 2qby_B CDC6 homolog 3, cell di 99.3 1.2E-11 4.2E-16 127.4 10.7 62 277-366 20-92 (384)
67 1jr3_A DNA polymerase III subu 99.3 4.3E-11 1.5E-15 122.9 14.3 105 278-435 17-145 (373)
68 3te6_A Regulatory protein SIR3 99.2 2.8E-11 9.6E-16 125.5 12.7 166 278-553 21-211 (318)
69 1sxj_B Activator 1 37 kDa subu 99.2 1.5E-11 5E-16 123.5 10.0 104 278-435 22-133 (323)
70 1sxj_C Activator 1 40 kDa subu 99.2 3.2E-11 1.1E-15 124.1 12.6 104 278-435 26-136 (340)
71 1sxj_A Activator 1 95 kDa subu 99.2 4.4E-11 1.5E-15 130.8 14.0 130 278-434 40-176 (516)
72 1r6b_X CLPA protein; AAA+, N-t 99.2 9.5E-12 3.3E-16 141.4 8.7 96 278-410 187-293 (758)
73 2v1u_A Cell division control p 99.2 2E-11 6.9E-16 125.1 10.3 103 277-410 19-145 (387)
74 1fnn_A CDC6P, cell division co 99.2 7.9E-11 2.7E-15 121.2 13.5 112 278-434 18-150 (389)
75 1a5t_A Delta prime, HOLB; zinc 99.2 2.1E-10 7E-15 118.5 16.4 86 331-435 25-134 (334)
76 1in4_A RUVB, holliday junction 99.2 2.6E-10 9E-15 117.7 16.6 105 275-435 24-128 (334)
77 1l8q_A Chromosomal replication 99.2 5.9E-11 2E-15 121.0 11.2 85 331-434 38-125 (324)
78 1sxj_E Activator 1 40 kDa subu 99.2 1.7E-10 5.8E-15 118.2 13.3 45 278-354 15-60 (354)
79 3dzd_A Transcriptional regulat 99.1 1.7E-10 6E-15 121.2 10.0 122 331-485 153-287 (368)
80 3f8t_A Predicted ATPase involv 99.1 1.7E-10 6E-15 125.2 9.9 143 269-470 206-349 (506)
81 2qby_A CDC6 homolog 1, cell di 99.1 3.1E-10 1.1E-14 115.9 11.2 116 278-434 21-157 (386)
82 3k1j_A LON protease, ATP-depen 99.1 3.8E-10 1.3E-14 125.7 11.2 45 278-356 42-86 (604)
83 3bos_A Putative DNA replicatio 99.0 2.5E-10 8.5E-15 109.1 8.0 76 331-434 53-131 (242)
84 2z4s_A Chromosomal replication 99.0 1.1E-09 3.8E-14 117.7 12.6 85 331-434 131-221 (440)
85 1ny5_A Transcriptional regulat 99.0 6.8E-10 2.3E-14 117.3 9.6 127 331-487 161-298 (387)
86 3ec2_A DNA replication protein 98.7 1.8E-08 6.3E-13 93.8 8.6 67 331-407 39-112 (180)
87 1w5s_A Origin recognition comp 98.7 1.1E-07 3.7E-12 98.7 12.3 62 278-365 23-96 (412)
88 4akg_A Glutathione S-transfera 98.6 1.6E-07 5.5E-12 119.4 11.7 120 330-470 1267-1394(2695)
89 2w58_A DNAI, primosome compone 98.4 1.4E-07 4.7E-12 89.1 5.2 36 331-366 55-93 (202)
90 2kjq_A DNAA-related protein; s 98.4 2.3E-07 7.9E-12 85.3 6.5 59 331-410 37-98 (149)
91 2qen_A Walker-type ATPase; unk 98.4 2E-06 6.9E-11 86.5 13.1 52 278-365 13-64 (350)
92 3cmw_A Protein RECA, recombina 98.4 7.9E-07 2.7E-11 109.0 11.7 153 271-435 1015-1203(1706)
93 2fna_A Conserved hypothetical 98.3 6.4E-06 2.2E-10 82.9 13.4 52 278-365 14-65 (357)
94 4akg_A Glutathione S-transfera 98.1 1.5E-05 5.3E-10 101.6 15.2 67 331-410 646-712 (2695)
95 2qgz_A Helicase loader, putati 98.1 6.7E-07 2.3E-11 91.6 2.0 36 331-366 153-192 (308)
96 1u0j_A DNA replication protein 98.1 1.7E-05 5.7E-10 80.4 11.3 25 331-355 105-129 (267)
97 1tue_A Replication protein E1; 98.1 4.1E-06 1.4E-10 82.1 6.5 77 331-440 59-135 (212)
98 2vhj_A Ntpase P4, P4; non- hyd 97.9 6.5E-06 2.2E-10 85.7 5.0 72 332-411 125-198 (331)
99 3vkg_A Dynein heavy chain, cyt 97.9 2.1E-05 7.3E-10 101.2 10.3 153 331-550 1305-1466(3245)
100 1ye8_A Protein THEP1, hypothet 97.9 0.00012 4.2E-09 69.0 12.9 27 332-358 2-28 (178)
101 3vaa_A Shikimate kinase, SK; s 97.7 2.6E-05 8.8E-10 73.9 4.2 45 317-361 11-56 (199)
102 2r2a_A Uncharacterized protein 97.5 4.8E-05 1.6E-09 73.5 4.0 73 332-410 7-102 (199)
103 3vkg_A Dynein heavy chain, cyt 97.4 0.00041 1.4E-08 89.6 12.2 66 332-410 606-671 (3245)
104 3cmu_A Protein RECA, recombina 97.4 0.00031 1.1E-08 87.5 9.1 78 330-411 1427-1521(2050)
105 3upu_A ATP-dependent DNA helic 97.2 0.0014 4.7E-08 70.3 11.6 24 331-354 46-69 (459)
106 2ehv_A Hypothetical protein PH 97.2 0.00096 3.3E-08 64.0 9.5 25 327-351 26-51 (251)
107 3trf_A Shikimate kinase, SK; a 97.2 0.0002 6.8E-09 66.2 4.1 31 331-361 6-36 (185)
108 1qhx_A CPT, protein (chloramph 97.2 0.00031 1.1E-08 64.3 5.0 33 331-363 4-36 (178)
109 4f4c_A Multidrug resistance pr 97.1 0.00084 2.9E-08 81.3 9.2 49 317-365 430-481 (1321)
110 3kb2_A SPBC2 prophage-derived 97.0 0.00042 1.4E-08 62.6 4.4 31 332-362 3-33 (173)
111 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0014 4.7E-08 61.8 7.2 35 328-362 20-58 (235)
112 2orw_A Thymidine kinase; TMTK, 96.9 0.0014 4.8E-08 61.9 7.3 22 332-353 5-26 (184)
113 4f4c_A Multidrug resistance pr 96.9 0.00051 1.7E-08 83.2 5.1 50 318-367 1092-1144(1321)
114 3qf4_B Uncharacterized ABC tra 96.9 0.0011 3.9E-08 73.6 7.5 38 318-355 368-406 (598)
115 2iyv_A Shikimate kinase, SK; t 96.9 0.00055 1.9E-08 63.2 4.2 31 331-361 3-33 (184)
116 1z6g_A Guanylate kinase; struc 96.9 0.00041 1.4E-08 67.0 3.3 35 320-354 12-47 (218)
117 1via_A Shikimate kinase; struc 96.9 0.00049 1.7E-08 63.3 3.7 29 332-360 6-34 (175)
118 1y63_A LMAJ004144AAA protein; 96.9 0.00048 1.7E-08 64.3 3.7 30 331-360 11-41 (184)
119 2jeo_A Uridine-cytidine kinase 96.9 0.00048 1.6E-08 67.3 3.8 40 318-357 12-52 (245)
120 1jr3_D DNA polymerase III, del 96.9 0.0011 3.9E-08 67.6 6.7 78 331-435 19-103 (343)
121 1svm_A Large T antigen; AAA+ f 96.9 0.0003 1E-08 74.4 2.2 36 325-360 163-199 (377)
122 1kag_A SKI, shikimate kinase I 96.9 0.0007 2.4E-08 61.7 4.4 29 331-359 5-33 (173)
123 1zuh_A Shikimate kinase; alpha 96.9 0.00058 2E-08 62.3 3.8 30 331-360 8-37 (168)
124 3iij_A Coilin-interacting nucl 96.9 0.00064 2.2E-08 62.7 4.1 30 331-360 12-41 (180)
125 1zp6_A Hypothetical protein AT 96.8 0.0006 2E-08 63.2 3.4 35 332-366 11-45 (191)
126 1n0w_A DNA repair protein RAD5 96.8 0.0022 7.6E-08 61.2 7.2 34 332-365 26-68 (243)
127 2rhm_A Putative kinase; P-loop 96.8 0.00072 2.5E-08 62.4 3.5 31 331-361 6-36 (193)
128 2ze6_A Isopentenyl transferase 96.7 0.00093 3.2E-08 66.1 4.5 32 332-363 3-34 (253)
129 2cvh_A DNA repair and recombin 96.7 0.0022 7.6E-08 60.3 6.5 37 329-365 18-55 (220)
130 3lw7_A Adenylate kinase relate 96.7 0.00089 3.1E-08 60.0 3.5 29 332-361 3-31 (179)
131 3t61_A Gluconokinase; PSI-biol 96.7 0.0013 4.5E-08 61.8 4.8 30 331-360 19-48 (202)
132 1e6c_A Shikimate kinase; phosp 96.7 0.00094 3.2E-08 60.7 3.6 30 331-360 3-32 (173)
133 3hr8_A Protein RECA; alpha and 96.7 0.0036 1.2E-07 65.6 8.5 78 332-409 63-153 (356)
134 1tev_A UMP-CMP kinase; ploop, 96.7 0.00091 3.1E-08 61.5 3.5 30 331-360 4-33 (196)
135 3e1s_A Exodeoxyribonuclease V, 96.7 0.0043 1.5E-07 68.9 9.5 32 331-362 205-239 (574)
136 3nwj_A ATSK2; P loop, shikimat 96.6 0.00037 1.2E-08 69.6 0.7 30 331-360 49-78 (250)
137 3qf4_A ABC transporter, ATP-bi 96.6 0.0022 7.6E-08 71.1 7.0 48 318-365 356-406 (587)
138 2cdn_A Adenylate kinase; phosp 96.6 0.0012 4E-08 62.1 4.1 31 331-361 21-51 (201)
139 2b8t_A Thymidine kinase; deoxy 96.6 0.005 1.7E-07 60.4 8.7 31 331-361 13-46 (223)
140 3tif_A Uncharacterized ABC tra 96.6 0.00042 1.4E-08 68.2 1.0 37 319-355 19-56 (235)
141 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.6E-08 61.5 3.6 31 331-361 10-40 (196)
142 3b9q_A Chloroplast SRP recepto 96.6 0.0029 1E-07 64.6 7.1 33 322-354 91-124 (302)
143 2zr9_A Protein RECA, recombina 96.6 0.0055 1.9E-07 63.8 9.2 81 329-409 59-153 (349)
144 2pt5_A Shikimate kinase, SK; a 96.6 0.0013 4.6E-08 59.5 3.9 29 332-360 2-30 (168)
145 1htw_A HI0065; nucleotide-bind 96.6 0.00059 2E-08 63.3 1.4 33 322-354 24-57 (158)
146 2pcj_A ABC transporter, lipopr 96.6 0.00044 1.5E-08 67.4 0.6 37 319-355 18-55 (224)
147 3cm0_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 60.3 4.0 29 332-360 6-34 (186)
148 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0016 5.5E-08 67.2 4.8 68 331-406 172-251 (330)
149 3dl0_A Adenylate kinase; phosp 96.5 0.0013 4.5E-08 62.4 3.7 30 332-361 2-31 (216)
150 2vli_A Antibiotic resistance p 96.5 0.0013 4.3E-08 60.4 3.4 29 331-359 6-34 (183)
151 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.9E-08 62.5 3.9 31 331-361 5-35 (220)
152 3fb4_A Adenylate kinase; psych 96.5 0.0014 4.9E-08 62.0 3.9 30 332-361 2-31 (216)
153 1tf7_A KAIC; homohexamer, hexa 96.5 0.004 1.4E-07 68.0 7.8 47 319-365 26-78 (525)
154 1knq_A Gluconate kinase; ALFA/ 96.5 0.0016 5.4E-08 59.6 4.0 29 331-359 9-37 (175)
155 1kht_A Adenylate kinase; phosp 96.5 0.0012 4E-08 60.7 3.1 25 331-355 4-28 (192)
156 1g6h_A High-affinity branched- 96.5 0.0006 2.1E-08 67.9 1.1 36 319-354 21-57 (257)
157 2bwj_A Adenylate kinase 5; pho 96.5 0.0013 4.4E-08 61.0 3.3 30 331-360 13-42 (199)
158 1b0u_A Histidine permease; ABC 96.5 0.00058 2E-08 68.3 1.0 36 319-354 20-56 (262)
159 3gfo_A Cobalt import ATP-bindi 96.5 0.00057 1.9E-08 69.1 0.8 35 320-354 23-58 (275)
160 2cbz_A Multidrug resistance-as 96.5 0.00067 2.3E-08 66.8 1.3 37 318-354 18-55 (237)
161 4a82_A Cystic fibrosis transme 96.5 0.0082 2.8E-07 66.4 10.1 38 318-355 354-392 (578)
162 4g1u_C Hemin import ATP-bindin 96.5 0.00057 1.9E-08 68.6 0.7 36 319-354 25-61 (266)
163 4eun_A Thermoresistant glucoki 96.4 0.0021 7.2E-08 60.6 4.5 34 331-366 30-63 (200)
164 1qf9_A UMP/CMP kinase, protein 96.4 0.0015 5.1E-08 60.0 3.4 31 331-361 7-37 (194)
165 1ly1_A Polynucleotide kinase; 96.4 0.0013 4.6E-08 59.7 3.0 28 331-358 3-31 (181)
166 1ak2_A Adenylate kinase isoenz 96.4 0.0019 6.4E-08 62.5 3.9 31 331-361 17-47 (233)
167 1ji0_A ABC transporter; ATP bi 96.4 0.00071 2.4E-08 66.7 0.9 36 319-354 20-56 (240)
168 2pze_A Cystic fibrosis transme 96.4 0.00081 2.8E-08 65.8 1.2 37 318-354 21-58 (229)
169 2olj_A Amino acid ABC transpor 96.4 0.00074 2.5E-08 67.8 1.0 37 319-355 38-75 (263)
170 3tr0_A Guanylate kinase, GMP k 96.4 0.0019 6.5E-08 60.3 3.7 24 332-355 9-32 (205)
171 1mv5_A LMRA, multidrug resista 96.4 0.00083 2.8E-08 66.2 1.2 37 318-354 15-52 (243)
172 3fvq_A Fe(3+) IONS import ATP- 96.4 0.00083 2.8E-08 70.6 1.2 36 319-354 18-54 (359)
173 2p5t_B PEZT; postsegregational 96.4 0.0019 6.6E-08 63.5 3.8 36 331-366 33-68 (253)
174 4gp7_A Metallophosphoesterase; 96.3 0.0018 6.2E-08 59.9 3.3 27 324-350 2-29 (171)
175 2ff7_A Alpha-hemolysin translo 96.3 0.00079 2.7E-08 66.7 0.9 36 319-354 23-59 (247)
176 2ixe_A Antigen peptide transpo 96.3 0.00092 3.2E-08 67.2 1.4 36 319-354 33-69 (271)
177 1zd8_A GTP:AMP phosphotransfer 96.3 0.0018 6.1E-08 62.2 3.4 30 331-360 8-37 (227)
178 3be4_A Adenylate kinase; malar 96.3 0.0019 6.4E-08 61.9 3.4 31 331-361 6-36 (217)
179 2v9p_A Replication protein E1; 96.3 0.00098 3.3E-08 68.6 1.5 38 321-358 116-154 (305)
180 3rlf_A Maltose/maltodextrin im 96.3 0.00099 3.4E-08 70.6 1.5 36 319-354 17-53 (381)
181 1ukz_A Uridylate kinase; trans 96.3 0.0021 7E-08 60.3 3.6 31 331-361 16-46 (203)
182 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.4E-08 59.2 4.0 28 332-359 2-29 (205)
183 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0012 4.2E-08 65.4 2.1 35 319-353 17-52 (250)
184 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.5E-08 63.3 2.3 36 320-355 16-53 (231)
185 1vpl_A ABC transporter, ATP-bi 96.3 0.00088 3E-08 66.9 1.0 36 319-354 29-65 (256)
186 1sgw_A Putative ABC transporte 96.3 0.00076 2.6E-08 65.7 0.5 37 319-355 23-60 (214)
187 3jvv_A Twitching mobility prot 96.3 0.023 7.9E-07 59.4 11.8 24 331-354 124-147 (356)
188 1zak_A Adenylate kinase; ATP:A 96.3 0.0015 5.3E-08 62.4 2.6 29 331-359 6-34 (222)
189 2ghi_A Transport protein; mult 96.3 0.001 3.5E-08 66.4 1.4 36 319-354 34-70 (260)
190 2zu0_C Probable ATP-dependent 96.3 0.0014 4.6E-08 65.8 2.2 36 319-354 34-70 (267)
191 2pbr_A DTMP kinase, thymidylat 96.3 0.0035 1.2E-07 57.6 4.8 30 333-362 3-35 (195)
192 2ihy_A ABC transporter, ATP-bi 96.3 0.0009 3.1E-08 67.7 0.8 36 319-354 35-71 (279)
193 2qi9_C Vitamin B12 import ATP- 96.3 0.001 3.5E-08 66.2 1.2 37 319-355 14-51 (249)
194 1z47_A CYSA, putative ABC-tran 96.3 0.0012 4.1E-08 69.3 1.8 36 319-354 29-65 (355)
195 2yz2_A Putative ABC transporte 96.3 0.00097 3.3E-08 66.8 1.0 36 319-354 21-57 (266)
196 1e4v_A Adenylate kinase; trans 96.2 0.0023 7.8E-08 60.9 3.6 30 332-361 2-31 (214)
197 1pzn_A RAD51, DNA repair and r 96.2 0.0051 1.8E-07 63.9 6.5 41 325-365 125-175 (349)
198 1cke_A CK, MSSA, protein (cyti 96.2 0.0029 1E-07 60.1 4.3 29 331-359 6-34 (227)
199 2fz4_A DNA repair protein RAD2 96.2 0.012 4.2E-07 57.3 8.8 34 331-364 109-142 (237)
200 2pez_A Bifunctional 3'-phospho 96.2 0.0038 1.3E-07 57.4 4.8 36 331-366 6-44 (179)
201 2nq2_C Hypothetical ABC transp 96.2 0.001 3.5E-08 66.2 0.8 36 319-354 19-55 (253)
202 3kl4_A SRP54, signal recogniti 96.2 0.014 4.8E-07 62.8 9.6 35 330-364 97-134 (433)
203 2it1_A 362AA long hypothetical 96.2 0.0013 4.4E-08 69.2 1.5 36 319-354 17-53 (362)
204 3g5u_A MCG1178, multidrug resi 96.2 0.0091 3.1E-07 72.1 8.9 37 319-355 1047-1084(1284)
205 3tlx_A Adenylate kinase 2; str 96.2 0.0027 9.2E-08 62.2 3.6 31 331-361 30-60 (243)
206 2yyz_A Sugar ABC transporter, 96.2 0.0013 4.6E-08 69.0 1.5 36 319-354 17-53 (359)
207 3uie_A Adenylyl-sulfate kinase 96.1 0.0032 1.1E-07 59.3 4.0 35 332-366 27-64 (200)
208 2onk_A Molybdate/tungstate ABC 96.1 0.0015 5.3E-08 64.5 1.7 34 320-354 14-48 (240)
209 1v43_A Sugar-binding transport 96.1 0.0014 4.9E-08 69.1 1.5 36 319-354 25-61 (372)
210 3gd7_A Fusion complex of cysti 96.1 0.0015 5E-08 69.4 1.6 37 318-354 34-71 (390)
211 1nks_A Adenylate kinase; therm 96.1 0.0021 7.3E-08 58.9 2.5 24 332-355 3-26 (194)
212 3sr0_A Adenylate kinase; phosp 96.1 0.0037 1.3E-07 60.4 4.3 27 333-359 3-29 (206)
213 2og2_A Putative signal recogni 96.1 0.0077 2.6E-07 63.2 7.0 32 323-354 149-181 (359)
214 2z0h_A DTMP kinase, thymidylat 96.1 0.0046 1.6E-07 57.1 4.8 30 333-362 3-35 (197)
215 1g29_1 MALK, maltose transport 96.1 0.0014 4.9E-08 69.0 1.4 36 319-354 17-53 (372)
216 2dr3_A UPF0273 protein PH0284; 96.1 0.008 2.7E-07 57.3 6.5 37 328-364 20-60 (247)
217 3crm_A TRNA delta(2)-isopenten 96.1 0.0034 1.2E-07 65.1 4.1 33 331-363 6-38 (323)
218 1gvn_B Zeta; postsegregational 96.1 0.0036 1.2E-07 63.2 4.2 36 331-366 34-69 (287)
219 3tui_C Methionine import ATP-b 96.1 0.0016 5.3E-08 68.7 1.5 36 319-354 42-78 (366)
220 2if2_A Dephospho-COA kinase; a 96.1 0.003 1E-07 59.2 3.2 29 332-361 3-31 (204)
221 2j41_A Guanylate kinase; GMP, 96.0 0.0031 1.1E-07 58.8 3.3 23 332-354 8-30 (207)
222 3dm5_A SRP54, signal recogniti 96.0 0.02 6.7E-07 61.8 9.9 36 330-365 100-138 (443)
223 3d31_A Sulfate/molybdate ABC t 96.0 0.0013 4.4E-08 68.8 0.6 35 320-354 15-50 (348)
224 2xb4_A Adenylate kinase; ATP-b 96.0 0.0043 1.5E-07 59.7 4.3 28 333-360 3-30 (223)
225 1znw_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 59.4 3.7 29 327-355 16-45 (207)
226 1oxx_K GLCV, glucose, ABC tran 96.0 0.0011 3.8E-08 69.3 -0.1 35 320-354 20-55 (353)
227 2v54_A DTMP kinase, thymidylat 96.0 0.0044 1.5E-07 57.7 4.0 32 331-362 5-37 (204)
228 1vma_A Cell division protein F 96.0 0.053 1.8E-06 55.5 12.3 32 332-363 106-140 (306)
229 1uf9_A TT1252 protein; P-loop, 95.9 0.0036 1.2E-07 58.2 3.2 29 331-360 9-37 (203)
230 3umf_A Adenylate kinase; rossm 95.9 0.0046 1.6E-07 60.5 4.1 29 331-359 30-58 (217)
231 2bbs_A Cystic fibrosis transme 95.9 0.0017 6E-08 66.0 1.1 36 319-354 52-88 (290)
232 3ake_A Cytidylate kinase; CMP 95.9 0.0045 1.6E-07 57.7 3.9 29 332-360 4-32 (208)
233 1xp8_A RECA protein, recombina 95.9 0.012 4.1E-07 61.8 7.4 78 332-409 76-166 (366)
234 2bbw_A Adenylate kinase 4, AK4 95.9 0.0052 1.8E-07 59.8 4.3 28 331-358 28-55 (246)
235 3nh6_A ATP-binding cassette SU 95.9 0.0013 4.6E-08 67.5 0.1 38 318-355 67-105 (306)
236 1jjv_A Dephospho-COA kinase; P 95.9 0.0038 1.3E-07 58.7 3.2 28 332-360 4-31 (206)
237 3thx_B DNA mismatch repair pro 95.9 0.0067 2.3E-07 70.9 5.8 36 318-353 660-696 (918)
238 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0053 1.8E-07 60.7 4.3 36 331-366 5-43 (260)
239 2plr_A DTMP kinase, probable t 95.8 0.0049 1.7E-07 57.5 3.6 26 331-356 5-30 (213)
240 3g5u_A MCG1178, multidrug resi 95.8 0.013 4.4E-07 70.9 8.0 47 319-365 404-453 (1284)
241 2yhs_A FTSY, cell division pro 95.8 0.0085 2.9E-07 65.6 5.8 33 322-354 284-317 (503)
242 1cr0_A DNA primase/helicase; R 95.8 0.0031 1.1E-07 63.0 2.2 44 319-362 23-71 (296)
243 3io5_A Recombination and repai 95.8 0.012 4.2E-07 61.1 6.7 36 330-365 28-68 (333)
244 1u94_A RECA protein, recombina 95.8 0.03 1E-06 58.5 9.8 38 328-365 60-101 (356)
245 2pjz_A Hypothetical protein ST 95.7 0.0022 7.6E-08 64.3 0.9 35 319-354 19-54 (263)
246 3cmu_A Protein RECA, recombina 95.7 0.022 7.6E-07 71.3 9.8 81 329-412 1080-1176(2050)
247 2z43_A DNA repair and recombin 95.7 0.018 6.2E-07 58.8 7.5 37 329-365 105-151 (324)
248 2yvu_A Probable adenylyl-sulfa 95.6 0.01 3.6E-07 54.8 5.1 35 331-365 14-51 (186)
249 2wwf_A Thymidilate kinase, put 95.6 0.0032 1.1E-07 59.0 1.5 27 331-357 11-37 (212)
250 2bdt_A BH3686; alpha-beta prot 95.6 0.0079 2.7E-07 55.7 4.1 33 332-365 4-36 (189)
251 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0068 2.3E-07 63.7 4.1 30 331-360 25-54 (359)
252 3a8t_A Adenylate isopentenyltr 95.6 0.0047 1.6E-07 64.5 2.8 32 332-363 42-73 (339)
253 3cmw_A Protein RECA, recombina 95.6 0.016 5.4E-07 71.7 7.6 79 331-409 733-824 (1706)
254 2qor_A Guanylate kinase; phosp 95.6 0.0073 2.5E-07 57.0 3.7 25 331-355 13-37 (204)
255 1kgd_A CASK, peripheral plasma 95.6 0.0073 2.5E-07 56.1 3.6 25 331-355 6-30 (180)
256 1zu4_A FTSY; GTPase, signal re 95.5 0.024 8.3E-07 58.3 7.8 42 322-363 96-141 (320)
257 3kta_A Chromosome segregation 95.5 0.0073 2.5E-07 55.5 3.5 34 322-355 18-51 (182)
258 3r20_A Cytidylate kinase; stru 95.5 0.0094 3.2E-07 58.9 4.4 30 331-360 10-39 (233)
259 2grj_A Dephospho-COA kinase; T 95.5 0.0078 2.7E-07 57.4 3.7 28 333-360 15-42 (192)
260 3c8u_A Fructokinase; YP_612366 95.4 0.008 2.7E-07 57.0 3.6 24 332-355 24-47 (208)
261 4e22_A Cytidylate kinase; P-lo 95.4 0.0099 3.4E-07 58.5 4.3 28 332-359 29-56 (252)
262 1g5t_A COB(I)alamin adenosyltr 95.4 0.06 2.1E-06 51.9 9.6 33 330-362 28-63 (196)
263 1vht_A Dephospho-COA kinase; s 95.4 0.0086 3E-07 56.8 3.5 28 332-360 6-33 (218)
264 2qt1_A Nicotinamide riboside k 95.4 0.0068 2.3E-07 57.1 2.7 28 332-359 23-51 (207)
265 3thx_A DNA mismatch repair pro 95.3 0.013 4.6E-07 68.5 5.7 35 318-352 649-684 (934)
266 2h92_A Cytidylate kinase; ross 95.3 0.01 3.5E-07 56.1 3.9 30 331-360 4-33 (219)
267 3asz_A Uridine kinase; cytidin 95.3 0.0077 2.6E-07 56.7 3.1 24 332-355 8-31 (211)
268 1rz3_A Hypothetical protein rb 95.3 0.036 1.2E-06 52.2 7.7 31 332-362 24-57 (201)
269 3a00_A Guanylate kinase, GMP k 95.3 0.0096 3.3E-07 55.4 3.6 24 332-355 3-26 (186)
270 1w36_D RECD, exodeoxyribonucle 95.3 0.021 7.1E-07 63.7 6.8 24 331-354 165-188 (608)
271 3tau_A Guanylate kinase, GMP k 95.3 0.0092 3.1E-07 56.8 3.3 25 331-355 9-33 (208)
272 2qmh_A HPR kinase/phosphorylas 95.2 0.008 2.7E-07 58.5 2.9 43 319-362 23-65 (205)
273 1v5w_A DMC1, meiotic recombina 95.2 0.033 1.1E-06 57.5 7.7 38 328-365 119-166 (343)
274 2eyu_A Twitching motility prot 95.2 0.0068 2.3E-07 60.5 2.4 33 320-354 16-49 (261)
275 4a74_A DNA repair and recombin 95.2 0.0096 3.3E-07 56.2 3.3 26 329-354 23-49 (231)
276 1nn5_A Similar to deoxythymidy 95.2 0.01 3.5E-07 55.5 3.4 25 331-355 10-34 (215)
277 3b5x_A Lipid A export ATP-bind 95.2 0.0085 2.9E-07 66.2 3.3 37 318-354 356-393 (582)
278 4eaq_A DTMP kinase, thymidylat 95.2 0.012 4E-07 57.4 3.8 41 320-360 12-58 (229)
279 1q3t_A Cytidylate kinase; nucl 95.2 0.014 4.9E-07 56.4 4.4 30 331-360 17-46 (236)
280 1lvg_A Guanylate kinase, GMP k 95.2 0.011 3.9E-07 55.8 3.6 25 331-355 5-29 (198)
281 3foz_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 61.0 3.7 33 331-363 11-43 (316)
282 1uj2_A Uridine-cytidine kinase 95.1 0.013 4.3E-07 57.4 3.8 26 332-357 24-49 (252)
283 3e70_C DPA, signal recognition 95.1 0.031 1.1E-06 57.8 6.9 23 332-354 131-153 (328)
284 1ltq_A Polynucleotide kinase; 95.0 0.0085 2.9E-07 59.6 2.4 29 331-359 3-32 (301)
285 3lda_A DNA repair protein RAD5 95.0 0.048 1.6E-06 57.9 8.3 25 328-352 175-200 (400)
286 3d3q_A TRNA delta(2)-isopenten 95.0 0.013 4.6E-07 61.0 3.7 31 332-362 9-39 (340)
287 3exa_A TRNA delta(2)-isopenten 94.9 0.012 4.2E-07 60.9 3.4 32 331-362 4-35 (322)
288 1m7g_A Adenylylsulfate kinase; 94.9 0.018 6.1E-07 54.6 4.0 35 331-365 26-64 (211)
289 3b60_A Lipid A export ATP-bind 94.8 0.0081 2.8E-07 66.4 1.7 38 318-355 356-394 (582)
290 1wb9_A DNA mismatch repair pro 94.7 0.027 9.1E-07 65.0 5.8 36 318-354 595-631 (800)
291 1xx6_A Thymidine kinase; NESG, 94.7 0.12 4.1E-06 49.2 9.5 31 332-362 10-43 (191)
292 1ex7_A Guanylate kinase; subst 94.7 0.024 8.2E-07 54.0 4.6 28 331-358 2-29 (186)
293 3euj_A Chromosome partition pr 94.6 0.014 4.9E-07 63.6 2.9 36 318-354 17-53 (483)
294 3aez_A Pantothenate kinase; tr 94.6 0.022 7.6E-07 58.3 4.2 26 330-355 89-115 (312)
295 3fdi_A Uncharacterized protein 94.5 0.023 7.9E-07 54.3 4.0 28 332-359 8-35 (201)
296 1s96_A Guanylate kinase, GMP k 94.5 0.02 7E-07 55.6 3.6 24 332-355 18-41 (219)
297 1sq5_A Pantothenate kinase; P- 94.5 0.014 4.6E-07 59.4 2.3 23 333-355 83-105 (308)
298 2yl4_A ATP-binding cassette SU 94.5 0.0076 2.6E-07 66.8 0.4 37 319-355 358-395 (595)
299 2obl_A ESCN; ATPase, hydrolase 94.4 0.016 5.5E-07 60.4 2.7 33 326-358 66-99 (347)
300 2qm8_A GTPase/ATPase; G protei 94.4 0.013 4.4E-07 60.6 2.0 35 320-354 44-79 (337)
301 2f6r_A COA synthase, bifunctio 94.4 0.019 6.6E-07 57.5 3.2 28 332-360 77-104 (281)
302 3zvl_A Bifunctional polynucleo 94.4 0.014 4.6E-07 62.0 2.1 29 331-359 259-287 (416)
303 1gtv_A TMK, thymidylate kinase 94.4 0.011 3.9E-07 55.3 1.3 23 333-355 3-25 (214)
304 2o8b_B DNA mismatch repair pro 94.3 0.046 1.6E-06 64.7 6.5 34 318-351 769-810 (1022)
305 3ney_A 55 kDa erythrocyte memb 94.3 0.027 9.3E-07 54.2 3.8 25 331-355 20-44 (197)
306 2j37_W Signal recognition part 94.2 0.16 5.4E-06 55.6 10.2 33 331-363 102-137 (504)
307 3eph_A TRNA isopentenyltransfe 94.2 0.023 7.7E-07 60.8 3.4 32 331-362 3-34 (409)
308 2dpy_A FLII, flagellum-specifi 94.2 0.02 6.7E-07 61.6 3.0 35 322-357 149-184 (438)
309 3b6e_A Interferon-induced heli 94.2 0.045 1.5E-06 50.8 5.1 23 331-353 49-71 (216)
310 1lw7_A Transcriptional regulat 94.2 0.025 8.7E-07 58.5 3.6 34 324-357 161-197 (365)
311 2i1q_A DNA repair and recombin 94.2 0.06 2E-06 54.5 6.3 26 328-353 95-121 (322)
312 1yqt_A RNAse L inhibitor; ATP- 94.1 0.019 6.3E-07 63.2 2.6 34 320-354 37-71 (538)
313 2v3c_C SRP54, signal recogniti 94.1 0.082 2.8E-06 56.7 7.4 34 331-364 100-136 (432)
314 1m2o_B GTP-binding protein SAR 94.1 0.025 8.6E-07 52.3 3.0 33 320-352 13-45 (190)
315 2gza_A Type IV secretion syste 94.0 0.0078 2.7E-07 62.8 -0.6 32 331-362 176-209 (361)
316 2ffh_A Protein (FFH); SRP54, s 94.0 0.079 2.7E-06 56.8 7.1 40 323-363 92-134 (425)
317 1sky_E F1-ATPase, F1-ATP synth 93.9 0.046 1.6E-06 59.4 5.1 24 331-354 152-175 (473)
318 2i3b_A HCR-ntpase, human cance 93.9 0.035 1.2E-06 52.7 3.7 23 332-354 3-25 (189)
319 1j8m_F SRP54, signal recogniti 93.9 0.059 2E-06 54.8 5.6 41 324-364 92-135 (297)
320 2axn_A 6-phosphofructo-2-kinas 93.8 0.069 2.4E-06 58.5 6.4 35 331-365 36-73 (520)
321 3hdt_A Putative kinase; struct 93.7 0.041 1.4E-06 53.7 4.0 29 332-360 16-44 (223)
322 4b3f_X DNA-binding protein smu 93.7 0.095 3.2E-06 58.5 7.4 31 332-362 207-240 (646)
323 3ice_A Transcription terminati 93.6 0.12 4.2E-06 55.1 7.6 30 325-354 168-198 (422)
324 1x6v_B Bifunctional 3'-phospho 93.6 0.048 1.6E-06 61.3 4.7 36 331-366 53-91 (630)
325 1odf_A YGR205W, hypothetical 3 93.6 0.085 2.9E-06 53.4 6.1 24 332-355 33-56 (290)
326 3gmt_A Adenylate kinase; ssgci 93.5 0.045 1.5E-06 54.0 3.8 28 333-360 11-38 (230)
327 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.023 8E-07 61.4 1.6 28 327-354 134-162 (460)
328 1nlf_A Regulatory protein REPA 93.3 0.043 1.5E-06 54.3 3.3 27 328-354 27-54 (279)
329 3ux8_A Excinuclease ABC, A sub 93.3 0.032 1.1E-06 62.6 2.7 30 318-347 31-61 (670)
330 1t6n_A Probable ATP-dependent 93.3 0.79 2.7E-05 42.9 12.0 23 331-353 52-74 (220)
331 4aby_A DNA repair protein RECN 93.2 0.015 5.2E-07 60.6 -0.0 36 320-355 50-85 (415)
332 3ux8_A Excinuclease ABC, A sub 93.2 0.025 8.7E-07 63.5 1.7 33 319-351 336-369 (670)
333 3b85_A Phosphate starvation-in 93.2 0.041 1.4E-06 53.0 2.9 22 332-353 24-45 (208)
334 2qag_B Septin-6, protein NEDD5 93.2 0.021 7.2E-07 61.3 1.0 33 321-353 30-65 (427)
335 1rj9_A FTSY, signal recognitio 93.2 0.05 1.7E-06 55.5 3.7 24 331-354 103-126 (304)
336 3bk7_A ABC transporter ATP-bin 93.1 0.029 1E-06 62.7 2.0 34 320-354 107-141 (607)
337 2ewv_A Twitching motility prot 93.0 0.049 1.7E-06 57.0 3.3 24 331-354 137-160 (372)
338 2iw3_A Elongation factor 3A; a 93.0 0.032 1.1E-06 65.7 2.1 34 319-352 449-483 (986)
339 2iut_A DNA translocase FTSK; n 92.9 0.91 3.1E-05 50.4 13.4 35 331-365 215-256 (574)
340 1ls1_A Signal recognition part 92.9 0.1 3.6E-06 52.7 5.5 41 322-363 91-134 (295)
341 1z6t_A APAF-1, apoptotic prote 92.9 0.082 2.8E-06 57.5 5.0 44 279-352 126-169 (591)
342 1yqt_A RNAse L inhibitor; ATP- 92.9 0.035 1.2E-06 61.1 2.1 34 321-354 302-336 (538)
343 1a7j_A Phosphoribulokinase; tr 92.9 0.052 1.8E-06 54.9 3.2 35 332-366 7-44 (290)
344 1p9r_A General secretion pathw 92.7 0.04 1.4E-06 58.8 2.2 25 331-355 168-192 (418)
345 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.07 2.4E-06 48.4 3.5 30 325-354 18-47 (149)
346 2j9r_A Thymidine kinase; TK1, 92.6 0.52 1.8E-05 46.0 9.8 29 334-362 32-63 (214)
347 3bk7_A ABC transporter ATP-bin 92.6 0.04 1.4E-06 61.6 2.1 34 321-354 372-406 (607)
348 1w4r_A Thymidine kinase; type 92.5 0.56 1.9E-05 45.1 9.8 32 332-363 22-56 (195)
349 2px0_A Flagellar biosynthesis 92.5 0.074 2.5E-06 54.0 3.8 35 330-364 105-143 (296)
350 3ozx_A RNAse L inhibitor; ATP 92.5 0.036 1.2E-06 61.1 1.6 33 322-354 285-318 (538)
351 3sop_A Neuronal-specific septi 92.4 0.062 2.1E-06 53.8 3.0 23 332-354 4-26 (270)
352 3qf7_A RAD50; ABC-ATPase, ATPa 92.3 0.055 1.9E-06 56.4 2.6 33 322-354 15-47 (365)
353 2oap_1 GSPE-2, type II secreti 92.3 0.093 3.2E-06 57.4 4.5 34 331-364 261-296 (511)
354 3j16_B RLI1P; ribosome recycli 92.3 0.052 1.8E-06 60.7 2.5 35 320-354 362-402 (608)
355 3tqf_A HPR(Ser) kinase; transf 92.2 0.055 1.9E-06 51.7 2.3 33 321-353 7-39 (181)
356 1tq4_A IIGP1, interferon-induc 92.2 0.021 7.2E-07 61.0 -0.7 23 332-354 71-93 (413)
357 3tqc_A Pantothenate kinase; bi 92.2 0.074 2.5E-06 54.9 3.4 23 333-355 95-117 (321)
358 1f6b_A SAR1; gtpases, N-termin 92.2 0.037 1.2E-06 51.6 1.0 29 324-352 19-47 (198)
359 3cr8_A Sulfate adenylyltranfer 92.2 0.051 1.7E-06 60.1 2.2 35 332-366 371-409 (552)
360 2zts_A Putative uncharacterize 92.1 0.18 6.1E-06 47.8 5.8 36 328-363 27-67 (251)
361 2f9l_A RAB11B, member RAS onco 92.1 0.08 2.7E-06 49.0 3.2 24 331-354 6-29 (199)
362 2wsm_A Hydrogenase expression/ 92.1 0.11 3.8E-06 48.7 4.2 25 331-355 31-55 (221)
363 2iw3_A Elongation factor 3A; a 92.1 0.028 9.4E-07 66.2 0.1 37 319-355 687-724 (986)
364 2lkc_A Translation initiation 92.1 0.1 3.5E-06 46.5 3.8 23 330-352 8-30 (178)
365 1oix_A RAS-related protein RAB 92.0 0.077 2.6E-06 49.1 2.9 23 332-354 31-53 (191)
366 1p5z_B DCK, deoxycytidine kina 91.9 0.039 1.3E-06 54.1 0.9 25 331-355 25-49 (263)
367 1m8p_A Sulfate adenylyltransfe 91.9 0.096 3.3E-06 58.1 4.1 34 332-365 398-435 (573)
368 2f1r_A Molybdopterin-guanine d 91.9 0.051 1.7E-06 50.9 1.5 24 332-355 4-27 (171)
369 2r8r_A Sensor protein; KDPD, P 91.8 0.15 5.1E-06 50.3 4.9 33 331-363 7-42 (228)
370 2a5y_B CED-4; apoptosis; HET: 91.8 0.14 4.9E-06 55.8 5.3 44 280-352 131-174 (549)
371 2o5v_A DNA replication and rep 91.8 0.092 3.1E-06 54.9 3.6 34 321-354 17-50 (359)
372 1g8f_A Sulfate adenylyltransfe 91.6 0.12 4.1E-06 56.7 4.3 26 331-356 396-421 (511)
373 2vp4_A Deoxynucleoside kinase; 91.6 0.1 3.5E-06 50.2 3.4 26 333-359 23-48 (230)
374 2ged_A SR-beta, signal recogni 91.5 0.17 5.9E-06 46.0 4.8 24 331-354 49-72 (193)
375 2p67_A LAO/AO transport system 91.5 0.14 4.7E-06 52.7 4.5 23 332-354 58-80 (341)
376 3vkw_A Replicase large subunit 91.4 0.23 7.9E-06 53.6 6.3 22 331-352 162-183 (446)
377 4edh_A DTMP kinase, thymidylat 91.4 0.11 3.7E-06 50.2 3.4 23 332-354 8-30 (213)
378 2ocp_A DGK, deoxyguanosine kin 91.4 0.095 3.2E-06 50.6 3.0 24 332-355 4-27 (241)
379 2dyk_A GTP-binding protein; GT 91.3 0.11 3.8E-06 45.4 3.2 22 332-353 3-24 (161)
380 1xjc_A MOBB protein homolog; s 91.3 0.12 4E-06 48.6 3.4 24 331-354 5-28 (169)
381 1np6_A Molybdopterin-guanine d 91.3 0.12 4E-06 48.5 3.4 24 331-354 7-30 (174)
382 1nrj_B SR-beta, signal recogni 91.2 0.12 4.1E-06 48.2 3.5 24 331-354 13-36 (218)
383 1z2a_A RAS-related protein RAB 91.2 0.12 4.1E-06 45.4 3.2 23 331-353 6-28 (168)
384 3ly5_A ATP-dependent RNA helic 91.1 0.92 3.2E-05 44.3 9.9 19 331-349 92-110 (262)
385 4ag6_A VIRB4 ATPase, type IV s 91.1 0.22 7.4E-06 51.8 5.6 34 329-362 34-70 (392)
386 1c9k_A COBU, adenosylcobinamid 91.0 0.12 4.1E-06 49.1 3.2 31 333-364 2-32 (180)
387 3v9p_A DTMP kinase, thymidylat 91.0 0.1 3.6E-06 51.1 2.9 23 332-354 27-49 (227)
388 3qks_A DNA double-strand break 91.0 0.13 4.5E-06 48.9 3.5 32 325-356 18-49 (203)
389 1u8z_A RAS-related protein RAL 91.0 0.12 4.2E-06 45.1 3.0 23 331-353 5-27 (168)
390 2qnr_A Septin-2, protein NEDD5 90.9 0.085 2.9E-06 53.4 2.2 29 320-353 13-41 (301)
391 2ce2_X GTPase HRAS; signaling 90.9 0.12 4E-06 45.0 2.9 23 331-353 4-26 (166)
392 2gk6_A Regulator of nonsense t 90.9 0.21 7.2E-06 55.6 5.6 24 331-354 196-219 (624)
393 1kao_A RAP2A; GTP-binding prot 90.9 0.12 4.2E-06 45.1 2.9 23 331-353 4-26 (167)
394 3lxx_A GTPase IMAP family memb 90.9 0.47 1.6E-05 45.4 7.3 23 331-353 30-52 (239)
395 1ek0_A Protein (GTP-binding pr 90.8 0.12 4.1E-06 45.4 2.8 23 331-353 4-26 (170)
396 3p32_A Probable GTPase RV1496/ 90.8 0.41 1.4E-05 49.4 7.3 32 331-362 80-114 (355)
397 2wji_A Ferrous iron transport 90.8 0.13 4.4E-06 46.1 3.1 22 331-352 4-25 (165)
398 2rcn_A Probable GTPase ENGC; Y 90.8 0.069 2.4E-06 56.0 1.4 38 318-355 203-240 (358)
399 2zej_A Dardarin, leucine-rich 90.6 0.11 3.8E-06 47.4 2.5 21 332-352 4-24 (184)
400 1pui_A ENGB, probable GTP-bind 90.6 0.08 2.7E-06 49.1 1.6 28 326-353 21-49 (210)
401 2xau_A PRE-mRNA-splicing facto 90.5 0.93 3.2E-05 51.9 10.5 22 331-352 110-131 (773)
402 1z0j_A RAB-22, RAS-related pro 90.5 0.15 5.1E-06 44.9 3.2 24 331-354 7-30 (170)
403 2nzj_A GTP-binding protein REM 90.4 0.14 5E-06 45.3 3.0 22 331-352 5-26 (175)
404 1xti_A Probable ATP-dependent 90.3 2.4 8.3E-05 42.6 12.4 21 331-351 46-66 (391)
405 2qag_C Septin-7; cell cycle, c 90.3 0.12 4.2E-06 55.1 2.9 31 319-354 25-55 (418)
406 1wms_A RAB-9, RAB9, RAS-relate 90.2 0.16 5.5E-06 45.2 3.2 23 331-353 8-30 (177)
407 1z08_A RAS-related protein RAB 90.2 0.16 5.5E-06 44.8 3.1 23 331-353 7-29 (170)
408 3tmk_A Thymidylate kinase; pho 90.2 0.22 7.6E-06 48.3 4.3 27 331-357 6-32 (216)
409 2wjg_A FEOB, ferrous iron tran 90.1 0.16 5.3E-06 46.0 3.1 22 331-352 8-29 (188)
410 1ky3_A GTP-binding protein YPT 90.1 0.16 5.6E-06 45.1 3.2 23 331-353 9-31 (182)
411 1bif_A 6-phosphofructo-2-kinas 90.1 0.15 5.2E-06 54.7 3.4 25 331-355 40-64 (469)
412 3lv8_A DTMP kinase, thymidylat 90.1 0.15 5.2E-06 50.2 3.1 23 332-354 29-51 (236)
413 1g16_A RAS-related protein SEC 90.1 0.15 5.3E-06 44.8 2.9 23 331-353 4-26 (170)
414 1r2q_A RAS-related protein RAB 90.0 0.17 5.9E-06 44.4 3.2 22 331-352 7-28 (170)
415 3bc1_A RAS-related protein RAB 90.0 0.17 5.8E-06 45.5 3.2 23 331-353 12-34 (195)
416 2erx_A GTP-binding protein DI- 90.0 0.16 5.6E-06 44.6 3.0 22 331-352 4-25 (172)
417 1e69_A Chromosome segregation 90.0 0.14 4.7E-06 52.1 2.8 32 323-354 17-48 (322)
418 1c1y_A RAS-related protein RAP 89.9 0.17 5.7E-06 44.4 3.0 23 331-353 4-26 (167)
419 3q85_A GTP-binding protein REM 89.9 0.17 5.7E-06 44.7 3.0 20 332-351 4-23 (169)
420 1r8s_A ADP-ribosylation factor 89.8 0.19 6.4E-06 44.2 3.2 22 332-353 2-23 (164)
421 2hf9_A Probable hydrogenase ni 89.6 0.33 1.1E-05 45.5 5.0 24 331-354 39-62 (226)
422 3q72_A GTP-binding protein RAD 89.6 0.16 5.4E-06 44.8 2.5 20 332-351 4-23 (166)
423 1z0f_A RAB14, member RAS oncog 89.5 0.2 6.7E-06 44.5 3.2 23 331-353 16-38 (179)
424 2r6a_A DNAB helicase, replicat 89.5 0.13 4.4E-06 55.0 2.2 43 321-363 193-240 (454)
425 4tmk_A Protein (thymidylate ki 89.4 0.18 6.3E-06 48.7 3.1 23 332-354 5-27 (213)
426 4dsu_A GTPase KRAS, isoform 2B 89.4 0.2 6.8E-06 45.0 3.2 23 331-353 5-27 (189)
427 1upt_A ARL1, ADP-ribosylation 89.4 0.2 7E-06 44.1 3.2 22 331-352 8-29 (171)
428 2a9k_A RAS-related protein RAL 89.4 0.2 6.9E-06 44.8 3.2 23 331-353 19-41 (187)
429 3con_A GTPase NRAS; structural 89.4 0.2 6.9E-06 45.4 3.2 23 331-353 22-44 (190)
430 1tf7_A KAIC; homohexamer, hexa 89.4 0.2 6.9E-06 54.5 3.7 26 329-354 279-305 (525)
431 3clv_A RAB5 protein, putative; 89.4 0.2 6.9E-06 45.1 3.2 23 331-353 8-30 (208)
432 4i1u_A Dephospho-COA kinase; s 89.4 0.21 7.3E-06 48.5 3.5 30 332-362 11-40 (210)
433 2fn4_A P23, RAS-related protei 89.3 0.19 6.4E-06 44.7 2.9 23 331-353 10-32 (181)
434 1ewq_A DNA mismatch repair pro 89.3 0.19 6.4E-06 57.7 3.5 35 318-354 566-600 (765)
435 2y8e_A RAB-protein 6, GH09086P 89.3 0.19 6.5E-06 44.6 2.9 23 331-353 15-37 (179)
436 3ld9_A DTMP kinase, thymidylat 89.3 0.21 7.2E-06 48.8 3.4 25 332-356 23-47 (223)
437 3tw8_B RAS-related protein RAB 89.3 0.19 6.4E-06 44.7 2.8 22 331-352 10-31 (181)
438 2g6b_A RAS-related protein RAB 89.2 0.21 7.1E-06 44.6 3.1 23 331-353 11-33 (180)
439 2oil_A CATX-8, RAS-related pro 89.1 0.22 7.4E-06 45.4 3.2 23 331-353 26-48 (193)
440 2wjy_A Regulator of nonsense t 89.1 0.35 1.2E-05 55.7 5.6 24 331-354 372-395 (800)
441 2hxs_A RAB-26, RAS-related pro 89.1 0.21 7.1E-06 44.5 3.0 22 331-352 7-28 (178)
442 3t1o_A Gliding protein MGLA; G 89.0 0.22 7.6E-06 44.9 3.2 24 331-354 15-38 (198)
443 2gj8_A MNME, tRNA modification 89.0 0.19 6.6E-06 45.5 2.8 23 331-353 5-27 (172)
444 2efe_B Small GTP-binding prote 89.0 0.22 7.6E-06 44.4 3.1 23 331-353 13-35 (181)
445 2www_A Methylmalonic aciduria 89.0 0.61 2.1E-05 48.2 6.8 23 332-354 76-98 (349)
446 3kkq_A RAS-related protein M-R 88.9 0.23 7.9E-06 44.6 3.2 23 331-353 19-41 (183)
447 1m7b_A RND3/RHOE small GTP-bin 88.8 0.21 7.3E-06 45.3 2.9 23 331-353 8-30 (184)
448 3bh0_A DNAB-like replicative h 88.8 0.16 5.5E-06 51.6 2.2 43 321-363 58-104 (315)
449 1yrb_A ATP(GTP)binding protein 88.7 0.39 1.3E-05 46.2 4.9 33 331-363 15-49 (262)
450 3ihw_A Centg3; RAS, centaurin, 88.7 0.23 7.9E-06 45.5 3.1 24 330-353 20-43 (184)
451 2bme_A RAB4A, RAS-related prot 88.7 0.22 7.5E-06 44.8 2.9 23 331-353 11-33 (186)
452 3ozx_A RNAse L inhibitor; ATP 88.7 0.16 5.3E-06 56.0 2.2 24 331-354 25-49 (538)
453 1mh1_A RAC1; GTP-binding, GTPa 88.7 0.25 8.4E-06 44.2 3.2 23 331-353 6-28 (186)
454 1ko7_A HPR kinase/phosphatase; 88.6 0.17 5.8E-06 52.2 2.3 34 320-353 134-167 (314)
455 3j16_B RLI1P; ribosome recycli 88.6 0.19 6.4E-06 56.2 2.8 27 328-354 100-127 (608)
456 2p6r_A Afuhel308 helicase; pro 88.6 2 6.9E-05 48.0 11.2 21 330-350 40-60 (702)
457 3qkt_A DNA double-strand break 88.6 0.16 5.6E-06 52.0 2.2 29 326-354 19-47 (339)
458 2cxx_A Probable GTP-binding pr 88.6 0.21 7.2E-06 45.0 2.6 21 332-352 3-23 (190)
459 1svi_A GTP-binding protein YSX 88.5 0.23 7.9E-06 45.1 2.9 22 331-352 24-45 (195)
460 3tkl_A RAS-related protein RAB 88.4 0.26 8.8E-06 44.7 3.2 23 331-353 17-39 (196)
461 2gf9_A RAS-related protein RAB 88.4 0.26 8.9E-06 44.8 3.2 23 331-353 23-45 (189)
462 3sfz_A APAF-1, apoptotic pepti 88.3 0.36 1.2E-05 56.4 5.1 46 278-353 125-170 (1249)
463 2bov_A RAla, RAS-related prote 88.3 0.26 9E-06 45.0 3.2 23 331-353 15-37 (206)
464 3pqc_A Probable GTP-binding pr 88.3 0.24 8.4E-06 44.6 2.9 23 331-353 24-46 (195)
465 3hjn_A DTMP kinase, thymidylat 88.3 0.43 1.5E-05 45.3 4.7 29 333-361 3-34 (197)
466 3bwd_D RAC-like GTP-binding pr 88.3 0.27 9.2E-06 43.9 3.2 23 331-353 9-31 (182)
467 1x3s_A RAS-related protein RAB 88.2 0.27 9.3E-06 44.4 3.2 23 331-353 16-38 (195)
468 2gks_A Bifunctional SAT/APS ki 88.2 0.37 1.3E-05 53.1 4.7 35 331-365 373-410 (546)
469 1vg8_A RAS-related protein RAB 88.1 0.28 9.4E-06 45.0 3.2 23 331-353 9-31 (207)
470 2atv_A RERG, RAS-like estrogen 87.9 0.29 9.8E-06 44.9 3.2 23 331-353 29-51 (196)
471 4hlc_A DTMP kinase, thymidylat 87.8 0.31 1E-05 46.7 3.4 28 333-360 5-34 (205)
472 3t5g_A GTP-binding protein RHE 87.8 0.27 9.3E-06 44.1 2.9 22 331-352 7-28 (181)
473 3e2i_A Thymidine kinase; Zn-bi 87.8 0.55 1.9E-05 46.1 5.2 30 333-362 31-63 (219)
474 2zj8_A DNA helicase, putative 87.8 3.8 0.00013 45.9 12.9 18 331-348 40-57 (720)
475 2a5j_A RAS-related protein RAB 87.7 0.3 1E-05 44.6 3.2 23 331-353 22-44 (191)
476 1z06_A RAS-related protein RAB 87.7 0.3 1E-05 44.4 3.2 22 331-352 21-42 (189)
477 3k53_A Ferrous iron transport 87.7 0.25 8.4E-06 48.7 2.7 23 331-353 4-26 (271)
478 1e9r_A Conjugal transfer prote 87.7 0.45 1.5E-05 50.0 4.9 35 329-363 52-89 (437)
479 1zd9_A ADP-ribosylation factor 87.6 0.31 1E-05 44.5 3.2 23 331-353 23-45 (188)
480 3reg_A RHO-like small GTPase; 87.6 0.31 1E-05 44.5 3.2 23 331-353 24-46 (194)
481 3c5c_A RAS-like protein 12; GD 87.6 0.3 1E-05 44.7 3.2 23 331-353 22-44 (187)
482 2iwr_A Centaurin gamma 1; ANK 87.6 0.23 7.7E-06 44.5 2.2 23 331-353 8-30 (178)
483 2ygr_A Uvrabc system protein A 87.6 0.17 5.9E-06 59.5 1.8 31 320-350 657-688 (993)
484 2p5s_A RAS and EF-hand domain 87.6 0.31 1.1E-05 44.9 3.2 23 331-353 29-51 (199)
485 3dz8_A RAS-related protein RAB 87.6 0.28 9.6E-06 44.8 2.9 24 331-354 24-47 (191)
486 2vf7_A UVRA2, excinuclease ABC 87.6 0.1 3.4E-06 60.6 -0.2 34 320-353 512-547 (842)
487 2fg5_A RAB-22B, RAS-related pr 87.6 0.28 9.5E-06 44.9 2.9 23 331-353 24-46 (192)
488 1zbd_A Rabphilin-3A; G protein 87.5 0.29 1E-05 44.9 3.0 23 331-353 9-31 (203)
489 2h57_A ADP-ribosylation factor 87.5 0.21 7.1E-06 45.5 1.9 24 330-353 21-44 (190)
490 2gf0_A GTP-binding protein DI- 87.4 0.29 1E-05 44.5 2.9 22 331-352 9-30 (199)
491 3cph_A RAS-related protein SEC 87.3 0.32 1.1E-05 44.8 3.2 23 331-353 21-43 (213)
492 1u0l_A Probable GTPase ENGC; p 87.3 0.2 6.7E-06 50.6 1.8 25 331-355 170-194 (301)
493 1qhl_A Protein (cell division 87.3 0.13 4.4E-06 50.4 0.4 28 328-355 25-52 (227)
494 2bcg_Y Protein YP2, GTP-bindin 87.2 0.3 1E-05 45.0 2.9 23 331-353 9-31 (206)
495 3oes_A GTPase rhebl1; small GT 87.2 0.3 1E-05 45.0 2.9 23 331-353 25-47 (201)
496 1ksh_A ARF-like protein 2; sma 87.1 0.31 1E-05 44.0 2.8 22 331-352 19-40 (186)
497 2yv5_A YJEQ protein; hydrolase 87.1 0.33 1.1E-05 49.1 3.3 23 331-354 166-188 (302)
498 3t34_A Dynamin-related protein 87.0 0.34 1.2E-05 49.8 3.4 32 319-352 25-56 (360)
499 1moz_A ARL1, ADP-ribosylation 87.0 0.22 7.4E-06 44.7 1.7 21 331-351 19-39 (183)
500 3l0o_A Transcription terminati 86.9 1.2 4.1E-05 47.6 7.5 24 331-354 176-199 (427)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.97 E-value=1.9e-30 Score=270.51 Aligned_cols=265 Identities=60% Similarity=0.970 Sum_probs=200.5
Q ss_pred CCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCch
Q 008329 264 KFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGK 343 (570)
Q Consensus 264 ~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGK 343 (570)
..++|+++.+.|++.|+||+.+++.|..++..++.+....... .....++.++||+|||||||
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-----------------~~~~~~~~~vll~GppGtGK 64 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTS-----------------NGVELGKSNILLIGPTGSGK 64 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCS-----------------SSCCCCCCCEEEECCTTSSH
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhcccccc-----------------ccccCCCCeEEEECCCCCCH
Confidence 4678999999999999999999999999998777764332111 11223457999999999999
Q ss_pred HHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 344 TLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 344 TtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
|++|+++|+.++.+|+.++++++...+|+|++....++..+..+...+....++||||||||++.+.++..+.+.+.+++
T Consensus 65 T~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 144 (363)
T 3hws_A 65 TLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGE 144 (363)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHH
T ss_pred HHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchH
Confidence 99999999999999999999998877899987677788888777665566788999999999999887766666777777
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccc-cccccCchhhhhhhcCCCCh
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD-SSIGFGAPVRANMRAGGVTD 502 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd-~~I~f~~p~~e~~~~~~~~~ 502 (570)
++++.||++|||..+.+++.+.........+.+.++|++||+++++.++++.+.++... ..++|....... ..
T Consensus 145 ~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~------~~ 218 (363)
T 3hws_A 145 GVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAK------SD 218 (363)
T ss_dssp HHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------------C
T ss_pred HHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCcccccccc------cc
Confidence 89999999999888888887777777777788999999999999999999999887665 778887654322 11
Q ss_pred HHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 503 AVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 503 ~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
......+.+.+.++++..+++.|+|++||+.++.+.+++.+++.+|+..
T Consensus 219 ~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 219 KASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp CSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred chhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 2234688899999999999999999999999999999999999999987
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.96 E-value=6.9e-28 Score=252.03 Aligned_cols=270 Identities=53% Similarity=0.858 Sum_probs=185.1
Q ss_pred CCCCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhh-------hcc-cccCCCCCCCCCCCCCCcccccCCcEE
Q 008329 263 NKFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNES-------SQK-RSAGESSSCTTDGVDDDTVELEKSNIL 334 (570)
Q Consensus 263 ~~~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~-------~~~-~~~~~~~~~~~~~ld~is~~i~~~~vL 334 (570)
...++++++.+.|++.|+||+++|+.|..++.+++.+..... ..+ .+.+ +.........++|
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~----------~~~~~~~~~~~il 76 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELE----------HLEEVELSKSNIL 76 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH----------HHHHTTCCCCCEE
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccc----------cccccccCCCCEE
Confidence 457889999999999999999999999999988877654321 000 0000 0000112346899
Q ss_pred EECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhc
Q 008329 335 LMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (570)
Q Consensus 335 L~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~ 414 (570)
|+||||||||++|+++|+.++.+++.++++.+...+|+|++....+...+......+....++||||||+|.+...+...
T Consensus 77 l~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~ 156 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENR 156 (376)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCC
Confidence 99999999999999999999999999999998877888887666777777665554555678999999999999886665
Q ss_pred ccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhh
Q 008329 415 NISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 415 ~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~ 494 (570)
....+.+++.+++.|+++||+..+.++..+.........+.+.++|+++|+++|+.++++++.+|.....++|+.+....
T Consensus 157 ~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~ 236 (376)
T 1um8_A 157 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK 236 (376)
T ss_dssp -------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT
T ss_pred ceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc
Confidence 56667777789999999999988888888888877777888999999999999988899888876666678887665421
Q ss_pred hhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 495 MRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 495 ~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
. ....+.+.+.+.++....+.|+|++|++.++.|.+++++++.+|+..
T Consensus 237 ~---------~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 237 K---------EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp T---------TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred c---------chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhh
Confidence 0 01234456677788888899999999999999999999999999975
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.94 E-value=1.6e-26 Score=249.34 Aligned_cols=224 Identities=42% Similarity=0.652 Sum_probs=176.4
Q ss_pred CCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchH
Q 008329 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (570)
Q Consensus 265 ~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKT 344 (570)
.++|+++.+.|+++|+||+++|+.|..++.++|++..... ....+.+++++||+||||||||
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~------------------~~~~~~~~~~iLl~GppGtGKT 64 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQE------------------PLRHEVTPKNILMIGPTGVGKT 64 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCT------------------TTTTTCCCCCEEEECCTTSSHH
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccc------------------ccccccCCceEEEEcCCCCCHH
Confidence 4789999999999999999999999999998887643211 1122234579999999999999
Q ss_pred HHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcc------------------------------------
Q 008329 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD------------------------------------ 388 (570)
Q Consensus 345 tLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~------------------------------------ 388 (570)
++|+++|+.++.+++.++++.+...+|+|++....++.+|..+.
T Consensus 65 ~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~ 144 (444)
T 1g41_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWG 144 (444)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------
T ss_pred HHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999988778999765666666654330
Q ss_pred ----------------------------------------hhH-------------------------------------
Q 008329 389 ----------------------------------------YNV------------------------------------- 391 (570)
Q Consensus 389 ----------------------------------------~~v------------------------------------- 391 (570)
..+
T Consensus 145 ~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 224 (444)
T 1g41_A 145 EVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALK 224 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHH
Confidence 000
Q ss_pred ---------------------hh-hcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccC
Q 008329 392 ---------------------AA-AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHP 449 (570)
Q Consensus 392 ---------------------~~-~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~ 449 (570)
.. ...+||++||||++....+ +.++|++++++|++||++||+.++++
T Consensus 225 ~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~--~~~~D~s~egvq~aLL~~le~~~~~~--------- 293 (444)
T 1g41_A 225 ALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSREGVQRDLLPLVEGSTVST--------- 293 (444)
T ss_dssp -CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS--CSSSHHHHHHHHHHHHHHHHCCEEEE---------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC--CCCCCchHHHHHHHHHHHhccccccc---------
Confidence 11 2467999999999986532 35788999999999999999987765
Q ss_pred CCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhc
Q 008329 450 RGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVG 529 (570)
Q Consensus 450 ~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~ 529 (570)
....++++|++|||+|+|.. + ++.| ++|||++
T Consensus 294 --~~~~~d~~~ilfI~~gaf~~---------------------~--------------------~~~d-----lipel~~ 325 (444)
T 1g41_A 294 --KHGMVKTDHILFIASGAFQV---------------------A--------------------RPSD-----LIPELQG 325 (444)
T ss_dssp --TTEEEECTTCEEEEEECCSS---------------------C--------------------CGGG-----SCHHHHT
T ss_pred --ccceecCCcEEEEecccccc---------------------C--------------------Chhh-----cchHHhc
Confidence 12588999999999998751 0 1223 6699999
Q ss_pred ccCeEEecCCCCHHHHHHHhcchh-----hccccccccCCc
Q 008329 530 RFPVLVSLLALTENQLVQKCHFPR-----FYKLPMSLSNLT 565 (570)
Q Consensus 530 Rf~~iv~l~~lseedL~~IL~~~~-----~y~~~~~~~~v~ 565 (570)
||++++.|++|+++|+.+|+++++ ||++++...++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~ 366 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVN 366 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCE
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCce
Confidence 999999999999999999998766 999999888875
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-24 Score=231.06 Aligned_cols=213 Identities=20% Similarity=0.323 Sum_probs=158.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|++|.++|....++ ++.....+ +++++||+||||||||++|+++|++++
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~---------------------~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIA---------------------QPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 3899999999999999854433 33333222 247999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. ..|+|++ ++.++++|..+.. ..|+||||||+|++.+.|...+.+.+....++.+.||..|||
T Consensus 208 ~~f~~v~~s~l~-sk~vGes-e~~vr~lF~~Ar~----~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 208 CKFIRVSGAELV-QKYIGEG-SRMVRELFVMARE----HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp CEEEEEEGGGGS-CSSTTHH-HHHHHHHHHHHHH----TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred CCceEEEhHHhh-ccccchH-HHHHHHHHHHHHH----hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 999999999998 6799998 8899999988764 589999999999999988766555555556788999999997
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
.. ...++++|+|||.++ +++++. .+|||..|.|+.|+.+. ...+.......+
T Consensus 282 ~~-------------------~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~-------R~~Il~~~~~~~ 335 (405)
T 4b4t_J 282 FE-------------------TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA-------RAEILRIHSRKM 335 (405)
T ss_dssp TT-------------------CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH-------HHHHHHHHHTTS
T ss_pred cC-------------------CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH-------HHHHHHHHhcCC
Confidence 42 245688999999998 666665 36999999999999765 122222222222
Q ss_pred ChhhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 514 ~~~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.-. ..+. .++..+ .+.++-.||..++++..
T Consensus 336 ~l~----~dvdl~~lA~~------t~G~SGADi~~l~~eA~ 366 (405)
T 4b4t_J 336 NLT----RGINLRKVAEK------MNGCSGADVKGVCTEAG 366 (405)
T ss_dssp BCC----SSCCHHHHHHH------CCSCCHHHHHHHHHHHH
T ss_pred CCC----ccCCHHHHHHH------CCCCCHHHHHHHHHHHH
Confidence 110 0111 222322 26788888888887654
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-23 Score=225.66 Aligned_cols=213 Identities=22% Similarity=0.293 Sum_probs=158.9
Q ss_pred ccCChHHHHHHHHHHHHhhhh--hhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~--r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|+.|.+.|....+ .++.....+ +++++||+||||||||++|+++|++++
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---------------------~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIK---------------------PPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---------------------CCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCCCceECCCCchHHHHHHHHHHHhC
Confidence 389999999999999975443 344433332 247999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. ..|+|++ ++.++.+|..+.. ..|+||||||+|++...|...+.+.+....++.+.||..|||
T Consensus 242 ~~fi~v~~s~l~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 242 ATFLRIVGSELI-QKYLGDG-PRLCRQIFKVAGE----NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp CEEEEEESGGGC-CSSSSHH-HHHHHHHHHHHHH----TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEHHHhh-hccCchH-HHHHHHHHHHHHh----cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 999999999998 6799998 8889999988764 579999999999999998766655555556678889999986
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
.. ...++++|+|||.++ +++++. .+|||..|.|+.|+.+. ...+....+..+
T Consensus 316 ~~-------------------~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~-------R~~Il~~~l~~~ 369 (437)
T 4b4t_I 316 FD-------------------DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLST-------KKKILGIHTSKM 369 (437)
T ss_dssp CC-------------------CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHH-------HHHHHHHHHTTS
T ss_pred cC-------------------CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHH-------HHHHHHHHhcCC
Confidence 31 356789999999998 555554 35999999999998765 222333333222
Q ss_pred ChhhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 514 ~~~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.-. ..+. .++..+ .+.++-.||..++.+..
T Consensus 370 ~l~----~dvdl~~LA~~------T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 370 NLS----EDVNLETLVTT------KDDLSGADIQAMCTEAG 400 (437)
T ss_dssp CBC----SCCCHHHHHHH------CCSCCHHHHHHHHHHHH
T ss_pred CCC----CcCCHHHHHHh------CCCCCHHHHHHHHHHHH
Confidence 210 0111 222222 36788999998887754
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.3e-23 Score=223.90 Aligned_cols=171 Identities=21% Similarity=0.296 Sum_probs=138.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|+.|.+.|....++ ++...+.+ +++++||+||||||||++|+++|++++
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~---------------------pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGID---------------------PPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC---------------------CCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 4999999999999998754432 33332222 347999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. ..|+|++ ++.++.+|..+.. ..|+||||||+|.+...|...+.+.+....++.+.||..|+|
T Consensus 269 ~~fi~vs~s~L~-sk~vGes-ek~ir~lF~~Ar~----~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 269 ATFIRVIGSELV-QKYVGEG-ARMVRELFEMART----KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp CEEEEEEGGGGC-CCSSSHH-HHHHHHHHHHHHH----TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred CCeEEEEhHHhh-cccCCHH-HHHHHHHHHHHHh----cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 999999999998 6799998 8889999988764 689999999999999988766555555555677888999986
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
.. ...++++|+|||.++ ++.++. .+|||..|.|+.|+.+.
T Consensus 343 ~~-------------------~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 343 FD-------------------PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp SC-------------------CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred cC-------------------CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHH
Confidence 31 355688999999988 666665 35999999999998765
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.4e-23 Score=222.28 Aligned_cols=213 Identities=20% Similarity=0.253 Sum_probs=157.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|+.|.++|....++ ++.....+ +++++||+||||||||++|+++|+.++
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---------------------~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIK---------------------PPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3899999999999999854433 33333222 347999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. .+|+|++ +..++.+|..+.. ..|+||||||+|++...|...+...+....++.+.||..|||
T Consensus 241 ~~~~~v~~s~l~-sk~~Ges-e~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 241 ANFIFSPASGIV-DKYIGES-ARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp CEEEEEEGGGTC-CSSSSHH-HHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred CCEEEEehhhhc-cccchHH-HHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 999999999998 6799998 7889999988764 589999999999999988766555555556678899999997
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
.. ...++++|+|||.++ +++++. ++|||..|.|+.|+.+. ...+...+...+
T Consensus 315 ~~-------------------~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~-------R~~Il~~~~~~~ 368 (437)
T 4b4t_L 315 FD-------------------NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAG-------RLEIFKIHTAKV 368 (437)
T ss_dssp SS-------------------CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHH-------HHHHHHHHHHTS
T ss_pred cc-------------------CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHH-------HHHHHHHHhcCC
Confidence 42 245688899999988 666655 45899999999998765 222333333322
Q ss_pred ChhhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 514 ~~~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
... ..+. .++..+ .+.++-.||..++.+..
T Consensus 369 ~~~----~d~dl~~lA~~------t~G~sGADi~~l~~eA~ 399 (437)
T 4b4t_L 369 KKT----GEFDFEAAVKM------SDGFNGADIRNCATEAG 399 (437)
T ss_dssp CBC----SCCCHHHHHHT------CCSCCHHHHHHHHHHHH
T ss_pred CCC----cccCHHHHHHh------CCCCCHHHHHHHHHHHH
Confidence 211 0111 222222 25688888888877643
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.8e-23 Score=219.88 Aligned_cols=212 Identities=20% Similarity=0.303 Sum_probs=157.3
Q ss_pred ccCChHHHHHHHHHHHHhhhh--hhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~--r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|+.|.+.|....+ .++...+.+ +++++||+||||||||++|+++|+.++
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---------------------~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGID---------------------PPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---------------------CCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999975443 233333322 247999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. ..|+|++ ++.++++|..+.. ..|+||||||+|++...|.....+.+....++.+.||..|||
T Consensus 232 ~~~~~v~~~~l~-~~~~Ge~-e~~ir~lF~~A~~----~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 232 AAFIRVNGSEFV-HKYLGEG-PRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp CEEEEEEGGGTC-CSSCSHH-HHHHHHHHHHHHH----TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEecchhh-ccccchh-HHHHHHHHHHHHH----cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 999999999988 6799998 8889999988763 579999999999999988766655555556789999999997
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccC-chhhhhhhcCCCChHHHHHHHHhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFG-APVRANMRAGGVTDAVVTSSLMET 512 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~-~p~~e~~~~~~~~~~~~~~~Ll~~ 512 (570)
.. ...++++|+|||.++ +++++.| +|||..|+|+ .|+.+. ...+...+...
T Consensus 306 ~~-------------------~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~-------R~~Il~~~~~~ 359 (428)
T 4b4t_K 306 FD-------------------QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRE-------RRLIFGTIASK 359 (428)
T ss_dssp SC-------------------SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHH-------HHHHHHHHHHS
T ss_pred CC-------------------CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHH-------HHHHHHHHhcC
Confidence 32 345689999999988 6666654 6999999996 787654 12233333332
Q ss_pred cChhhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 513 VESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 513 l~~~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
+.-.+ ... .++..+ .++++-.||..++++.
T Consensus 360 ~~l~~----~~dl~~lA~~------t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 360 MSLAP----EADLDSLIIR------NDSLSGAVIAAIMQEA 390 (428)
T ss_dssp SCBCT----TCCHHHHHHH------TTTCCHHHHHHHHHHH
T ss_pred CCCCc----ccCHHHHHHH------CCCCCHHHHHHHHHHH
Confidence 22100 011 223332 2678888888887764
No 9
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.8e-23 Score=221.81 Aligned_cols=213 Identities=22% Similarity=0.285 Sum_probs=157.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|+.|.+.|..+.++ ++.....+ +++++||+||||||||++|+++|++++
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---------------------~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---------------------APKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---------------------CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---------------------CCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 3899999999999998755443 33332222 247999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++++++. ..|+|++ ++.++.+|..+.. ..|+||||||+|.+...|...+.+.+....++.+.||..|||
T Consensus 241 ~~f~~v~~s~l~-~~~vGes-e~~ir~lF~~A~~----~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 241 ATFLKLAAPQLV-QMYIGEG-AKLVRDAFALAKE----KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp CEEEEEEGGGGC-SSCSSHH-HHHHHHHHHHHHH----HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred CCEEEEehhhhh-hcccchH-HHHHHHHHHHHHh----cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 999999999998 6799998 8889999988764 689999999999999988665544444445577889999996
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhc
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETV 513 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l 513 (570)
.. ...++++|+|||.++ +++++. .+|||..|.|+.|+.+. ...+.......+
T Consensus 315 ~~-------------------~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~-------R~~Il~~~~~~~ 368 (434)
T 4b4t_M 315 FS-------------------SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDS-------RAQILQIHSRKM 368 (434)
T ss_dssp SC-------------------SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHH-------HHHHHHHHHHHS
T ss_pred cC-------------------CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHH-------HHHHHHHHhcCC
Confidence 32 245688999999988 555553 56999999999998765 223333333332
Q ss_pred ChhhHHhcCCC-hhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 514 ESSDLIAYGLI-PEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 514 ~~~dl~~~gl~-Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
... ..+. .++..+ .+.++-.||..++.+..
T Consensus 369 ~~~----~dvdl~~lA~~------t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 369 TTD----DDINWQELARS------TDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp CBC----SCCCHHHHHHH------CSSCCHHHHHHHHHHHH
T ss_pred CCC----CcCCHHHHHHh------CCCCCHHHHHHHHHHHH
Confidence 211 1122 223332 36789999999888754
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.83 E-value=2.7e-21 Score=221.65 Aligned_cols=172 Identities=23% Similarity=0.287 Sum_probs=122.8
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
|.|++++|+.|.+++....++.... ..... .++.++||+||||||||++|+++|.+++.+|
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f------------------~~~g~-~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKF------------------LKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGG------------------SSSCC-CCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHH------------------HhcCC-CCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 8999999999999986443321110 00011 1347899999999999999999999999999
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCee
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v 438 (570)
+.++++++. .+|+|++ ++.++++|..|+. ..|+||||||||++.+.|+....+.+...+++.++||..|||..
T Consensus 540 ~~v~~~~l~-s~~vGes-e~~vr~lF~~Ar~----~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~- 612 (806)
T 3cf2_A 540 ISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 612 (806)
T ss_dssp EECCHHHHH-TTTCSSC-HHHHHHHHHHHHT----TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-
T ss_pred EEeccchhh-ccccchH-HHHHHHHHHHHHH----cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-
Confidence 999999988 6799998 8899999998863 57999999999999998865433333344568999999999731
Q ss_pred eecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 439 ~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
..+++++|+|||.++ +++++. .+||++.|.++.|+.+.
T Consensus 613 ------------------~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~ 652 (806)
T 3cf2_A 613 ------------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp ------------------SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred ------------------CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH
Confidence 245689999999998 565555 35999999999998765
No 11
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=1.6e-19 Score=180.89 Aligned_cols=210 Identities=41% Similarity=0.651 Sum_probs=154.3
Q ss_pred CCChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchH
Q 008329 265 FPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (570)
Q Consensus 265 ~~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKT 344 (570)
..+|+++.+.+++.|+||+++++.|..++..++.+.......+ ....+.++||+||||||||
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~------------------~~~~~~~vll~G~~GtGKT 64 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR------------------HEVTPKNILMIGPTGVGKT 64 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH------------------HHCCCCCEEEECCTTSSHH
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc------------------ccCCCceEEEECCCCCCHH
Confidence 3689999999999999999999999999876544311110000 0112468999999999999
Q ss_pred HHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhh-hcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 345 LLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAA-AQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 345 tLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~-~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
++|+++|+.++.+++.++++++...+|+|.+....+++++..+...+.. ..++||||||+|.+.+... +.+.+..++
T Consensus 65 ~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~--~~~~~~~~~ 142 (310)
T 1ofh_A 65 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE--YSGADVSRE 142 (310)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS--CCSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc--ccccchhHH
Confidence 9999999999999999999998866888877566677777655322222 3478999999999987643 123444556
Q ss_pred HHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChH
Q 008329 424 GVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDA 503 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~ 503 (570)
.+++.|+++||+..+... . -.....++++|++++....
T Consensus 143 ~~~~~Ll~~le~~~~~~~--------~---~~~~~~~~~~i~~~~~~~~------------------------------- 180 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVSTK--------H---GMVKTDHILFIASGAFQVA------------------------------- 180 (310)
T ss_dssp HHHHHHHHHHHCCEEEET--------T---EEEECTTCEEEEEECCSSS-------------------------------
T ss_pred HHHHHHHHHhcCCeEecc--------c---ccccCCcEEEEEcCCcccC-------------------------------
Confidence 679999999997543320 0 1345678899998764210
Q ss_pred HHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcc
Q 008329 504 VVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHF 551 (570)
Q Consensus 504 ~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~ 551 (570)
.+ ..+.|++++||+.++.+++++++++.+|+..
T Consensus 181 ----------~~-----~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 181 ----------RP-----SDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp ----------CG-----GGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred ----------Cc-----ccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 00 0266999999998899999999999999985
No 12
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.79 E-value=1.2e-19 Score=208.13 Aligned_cols=168 Identities=23% Similarity=0.368 Sum_probs=133.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|.|++++|+.|++.|....++ ++... .+ .+++++||+||||||||++|+++|++++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~--------------------g~-~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAI--------------------GV-KPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSC--------------------CC-CCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhc--------------------CC-CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999754432 22111 11 1347999999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++.++++++. ..|+|+. +..++++|..+.. ..|+||||||+|.+.++|++.+ +....++.++|+..|+|
T Consensus 264 ~~~~~v~~~~l~-sk~~ges-e~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDG 334 (806)
T ss_dssp CEEEEEEHHHHH-SSCTTHH-HHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHH
T ss_pred CeEEEEEhHHhh-cccchHH-HHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhc
Confidence 999999999988 6799997 8889999998764 5799999999999999876532 23345689999999996
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
.. ...++++|++||.++ +++++++ +||+..|+++.|+.+.
T Consensus 335 ~~-------------------~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 335 LK-------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp CC-------------------GGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred cc-------------------ccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH
Confidence 31 245688999999887 5555543 4999999999998765
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=173.54 Aligned_cols=213 Identities=21% Similarity=0.257 Sum_probs=148.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh-CC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-NV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-g~ 356 (570)
+|+|++++|+.|.+++....+....... ...+++++||+||||||||++|+++|+.+ +.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~--------------------~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 72 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTG--------------------KRTPWRGILLFGPPGTGKSYLAKAVATEANNS 72 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCT--------------------TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhC--------------------CCCCCceEEEECCCCccHHHHHHHHHHHcCCC
Confidence 3899999999999999754432111000 01234789999999999999999999999 88
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~ 436 (570)
+++.++++++. ..|+|+. +..++.+|..+.. ..++||||||+|.+.+.+... ......++++.|+..|++.
T Consensus 73 ~~~~i~~~~l~-~~~~g~~-~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~ 143 (322)
T 1xwi_A 73 TFFSISSSDLV-SKWLGES-EKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGV 143 (322)
T ss_dssp EEEEEECCSSC-CSSCCSC-HHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCS
T ss_pred cEEEEEhHHHH-hhhhhHH-HHHHHHHHHHHHh----cCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcc
Confidence 99999999987 5688886 7778888876542 578999999999998765432 1223456889999999963
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcCh
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVES 515 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~ 515 (570)
. ....++++|+++|.++ +++++. |||+..+.++.|+.+.. ..+...++....
T Consensus 144 ~------------------~~~~~v~vI~atn~~~~ld~al~-rRf~~~i~i~~P~~~~r-------~~il~~~l~~~~- 196 (322)
T 1xwi_A 144 G------------------VDNDGILVLGATNIPWVLDSAIR-RRFEKRIYIPLPEPHAR-------AAMFKLHLGTTQ- 196 (322)
T ss_dssp S------------------SCCTTEEEEEEESCTTTSCHHHH-HTCCEEEECCCCCHHHH-------HHHHHHHHTTCC-
T ss_pred c------------------ccCCCEEEEEecCCcccCCHHHH-hhcCeEEEeCCcCHHHH-------HHHHHHHHhcCC-
Confidence 1 1245688999999887 555554 48999999999987651 122222221111
Q ss_pred hhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 516 ~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..+.++.+..+.. ....++..||..++.+..
T Consensus 197 -----~~l~~~~l~~la~--~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 197 -----NSLTEADFRELGR--KTDGYSGADISIIVRDAL 227 (322)
T ss_dssp -----BCCCHHHHHHHHH--TCTTCCHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 1133444444321 246789999999998865
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.76 E-value=6.8e-18 Score=173.35 Aligned_cols=211 Identities=23% Similarity=0.283 Sum_probs=145.5
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
|+|++.+|+.|.+++............ ...++.++||+||||||||++|+++|+.++.++
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~--------------------~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKG--------------------NRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCT--------------------TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhc--------------------CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 899999999999998644332110000 011347899999999999999999999999999
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCee
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v 438 (570)
+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+.+.+... .....+++++.|+..|++..
T Consensus 80 ~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~- 149 (322)
T 3eie_A 80 FSVSSSDLV-SKWMGES-EKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG- 149 (322)
T ss_dssp EEEEHHHHH-TTTGGGH-HHHHHHHHHHHHH----TSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGG-
T ss_pred EEEchHHHh-hcccchH-HHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhcccc-
Confidence 999999987 5688886 6778888877643 578999999999998876432 22234568999999998531
Q ss_pred eecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhh-cChh
Q 008329 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET-VESS 516 (570)
Q Consensus 439 ~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~-l~~~ 516 (570)
-...++++|+++|.++ +++++.+ ||+..+.++.|+.+. ...+++. +...
T Consensus 150 -----------------~~~~~v~vi~atn~~~~ld~al~~-Rf~~~i~~~~p~~~~-----------r~~il~~~~~~~ 200 (322)
T 3eie_A 150 -----------------NDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA-----------RTTMFEINVGDT 200 (322)
T ss_dssp -----------------TSCCCEEEEEEESCGGGSCHHHHH-HCCEEEECCCCCHHH-----------HHHHHHHHHTTC
T ss_pred -----------------ccCCceEEEEecCChhhCCHHHHc-ccCeEEEeCCCCHHH-----------HHHHHHHHhccC
Confidence 0234588899998876 5556554 899999999998765 1222221 1110
Q ss_pred hHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 517 dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
...+.++.+..+.. ....++..|+..++.+..
T Consensus 201 ---~~~~~~~~l~~la~--~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 201 ---PCVLTKEDYRTLGA--MTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp ---CCCCCHHHHHHHHH--TTTTCCHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 01134555444321 236789999999988775
No 15
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.75 E-value=1.3e-17 Score=189.60 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=140.4
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
...+.+.+.+.|+||+++++.|..++...... ...+. .+.+++||+||||||||++|
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g------------~~~~~-----------~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAG------------LGHEH-----------KPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTT------------CSCTT-----------SCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcc------------cCCCC-----------CCceEEEEECCCCCcHHHHH
Confidence 45577788889999999999999888532211 10110 12357999999999999999
Q ss_pred HHHHHHhCCcEEEeecccccc-----------cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhccc
Q 008329 348 KTLARYVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (570)
Q Consensus 348 raLA~~lg~~fv~i~~s~l~~-----------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~ 416 (570)
+++|+.++.+++.++++++.+ .+|+|.+....+.+.+. ...++||||||||++.++
T Consensus 506 ~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~-------~~~~~vl~lDEi~~~~~~------ 572 (758)
T 1r6b_X 506 VQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAVLLLDEIEKAHPD------ 572 (758)
T ss_dssp HHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHH-------HCSSEEEEEETGGGSCHH------
T ss_pred HHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHH-------hCCCcEEEEeCccccCHH------
Confidence 999999999999999998754 23666543333333332 245789999999999876
Q ss_pred CCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhh
Q 008329 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (570)
Q Consensus 417 ~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~ 496 (570)
+++.|+++||+..+.. . ....++..|+++|+|+|...- ... +..++|.....+
T Consensus 573 --------~~~~Ll~~le~~~~~~--------~--~g~~~~~~~~~iI~tsN~~~~-~~~-----~~~~g~~~~~~~--- 625 (758)
T 1r6b_X 573 --------VFNILLQVMDNGTLTD--------N--NGRKADFRNVVLVMTTNAGVR-ETE-----RKSIGLIHQDNS--- 625 (758)
T ss_dssp --------HHHHHHHHHHHSEEEE--------T--TTEEEECTTEEEEEEECSSCC------------------------
T ss_pred --------HHHHHHHHhcCcEEEc--------C--CCCEEecCCeEEEEecCcchh-hhh-----hcccCccccchH---
Confidence 9999999999544332 1 134677899999999997531 111 123444321110
Q ss_pred cCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 497 ~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
....+. .+..+.|+|++||+.++.|++++++++.+|+....
T Consensus 626 ------~~~~~~----------~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 626 ------TDAMEE----------IKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp --------CHHH----------HHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ------HHHHHH----------HHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 011111 12247899999999999999999999999998754
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.75 E-value=9.9e-18 Score=170.77 Aligned_cols=171 Identities=23% Similarity=0.307 Sum_probs=125.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+|+|++.+|+.|.+++.....+ .+..... .++.++||+||||||||++|+++|+.++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~---------------------~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGM---------------------TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---------------------CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC---------------------CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3899999999999998643221 1111111 1236899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++.++++++. ..|+|+. ...++.+|..+.. ..++||||||+|.+...+............++++.|+..|++
T Consensus 75 ~~~i~v~~~~l~-~~~~g~~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 75 ANFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp CEEEEECHHHHH-HHHHTTC-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred CCEEEEEhHHHH-hhhcCch-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 999999998876 4577776 5667777776542 468999999999999886543222222234578899999985
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
.. ...++++|+++|.++ +++.+. .+||+..|.++.|+.+.
T Consensus 149 ~~-------------------~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 149 MS-------------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp SC-------------------TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred cc-------------------CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH
Confidence 21 235688999999876 444433 35999999999998765
No 17
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.75 E-value=3.2e-17 Score=165.05 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=135.0
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
..++.+.+.+.++||+.+++.|...+......+.. + ..+..++||+||||||||++|
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~------------~-----------~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKD------------P-----------NRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSC------------T-----------TSCSEEEEEESCSSSSHHHHH
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCC------------C-----------CCCceEEEEECCCCcCHHHHH
Confidence 34677888889999999999999998633221100 0 012257999999999999999
Q ss_pred HHHHHHh---CCcEEEeeccccccc-----------ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 348 KTLARYV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 348 raLA~~l---g~~fv~i~~s~l~~~-----------g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
+++|+.+ +.+++.++++.+... +++|......+.+.+ ....++||||||+|++.+.
T Consensus 65 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~~vl~lDEi~~l~~~--- 134 (311)
T 4fcw_A 65 KTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDAIEKAHPD--- 134 (311)
T ss_dssp HHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHH-------HHCSSEEEEEETGGGSCHH---
T ss_pred HHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHH-------HhCCCeEEEEeChhhcCHH---
Confidence 9999998 567999999876531 111211111122221 2235689999999999876
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhh
Q 008329 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e 493 (570)
+++.|+++|++..+.. .....++..++++|+++|... . .+.....+ .
T Consensus 135 -----------~~~~Ll~~le~~~~~~----------~~~~~~~~~~~iiI~ttn~~~-~-~i~~~~~~-----~----- 181 (311)
T 4fcw_A 135 -----------VFNILLQMLDDGRLTD----------SHGRTVDFRNTVIIMTSNLGS-P-LILEGLQK-----G----- 181 (311)
T ss_dssp -----------HHHHHHHHHHHSEEEC----------TTSCEEECTTEEEEEEESTTH-H-HHHTTTTS-----C-----
T ss_pred -----------HHHHHHHHHhcCEEEc----------CCCCEEECCCcEEEEecccCH-H-HHHhhhcc-----c-----
Confidence 8999999999544321 112366788899999999742 1 11110000 0
Q ss_pred hhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
...+. +.+.+. +.....+.|+|++||+.++.+.+++.+++.+|+....
T Consensus 182 ------~~~~~----l~~~~~--~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 182 ------WPYER----IRDEVF--KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp ------CCSST----HHHHTH--HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred ------ccHHH----HHHHHH--HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 00000 111111 0112247899999999999999999999999998754
No 18
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.73 E-value=2.8e-17 Score=165.60 Aligned_cols=189 Identities=20% Similarity=0.295 Sum_probs=131.3
Q ss_pred CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhh-hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchH
Q 008329 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMR-IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKT 344 (570)
Q Consensus 266 ~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r-~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKT 344 (570)
...+++.+.+++.|+|++.+|+.|.+.+...... ..... +... .....++||+||||||||
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~------g~~~------------~~~~~~vll~G~~GtGKT 81 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKL------GLAH------------ETPTLHMSFTGNPGTGKT 81 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH------TCCS------------SCCCCEEEEEECTTSSHH
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHc------CCCC------------CCCCceEEEECCCCCCHH
Confidence 4567888899978999999999999888633211 11111 1000 112368999999999999
Q ss_pred HHHHHHHHHh-------CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 345 LLAKTLARYV-------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 345 tLAraLA~~l-------g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
++|+++|+.+ ..+++.++++++. ..++|.. ...+...+..+ .++||||||+|.+...+..
T Consensus 82 ~la~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~g~~-~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~---- 148 (309)
T 3syl_A 82 TVALKMAGLLHRLGYVRKGHLVSVTRDDLV-GQYIGHT-APKTKEVLKRA-------MGGVLFIDEAYYLYRPDNE---- 148 (309)
T ss_dssp HHHHHHHHHHHHTTSSSSCCEEEECGGGTC-CSSTTCH-HHHHHHHHHHH-------TTSEEEEETGGGSCCCC------
T ss_pred HHHHHHHHHHHhcCCcCCCcEEEEcHHHhh-hhccccc-HHHHHHHHHhc-------CCCEEEEEChhhhccCCCc----
Confidence 9999999988 3489999998887 4577775 44455555443 5689999999999754321
Q ss_pred CCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhc
Q 008329 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRA 497 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~ 497 (570)
+.....+++.|++.|++. ..++++|++++..+++...
T Consensus 149 -~~~~~~~~~~Ll~~l~~~---------------------~~~~~~i~~~~~~~~~~~~--------------------- 185 (309)
T 3syl_A 149 -RDYGQEAIEILLQVMENN---------------------RDDLVVILAGYADRMENFF--------------------- 185 (309)
T ss_dssp --CCTHHHHHHHHHHHHHC---------------------TTTCEEEEEECHHHHHHHH---------------------
T ss_pred -ccccHHHHHHHHHHHhcC---------------------CCCEEEEEeCChHHHHHHH---------------------
Confidence 122345899999999831 3457788888753211111
Q ss_pred CCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 498 GGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 498 ~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
.+.|.+.+||+.++.|.+++.+++.+|+...
T Consensus 186 ------------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 186 ------------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp ------------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHHH
T ss_pred ------------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHH
Confidence 0347888888888888888888888888654
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.73 E-value=3.3e-17 Score=171.26 Aligned_cols=213 Identities=22% Similarity=0.249 Sum_probs=139.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+++.|.+++............ ...++.++||+||||||||++|+++|+.++.+
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~--------------------~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKG--------------------NRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCS--------------------SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhc--------------------CCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4899999999999988643221100000 01134689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++++. ..|+|+. ...++.+|..+. ...++||||||+|.+.+.+... ......++++.|+..|++..
T Consensus 112 ~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 112 FFSVSSSDLV-SKWMGES-EKLVKQLFAMAR----ENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEEHHHHH-SCC---C-HHHHHHHHHHHH----HTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC
T ss_pred EEEeeHHHHh-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhccc
Confidence 9999999887 4588876 677777776654 2478999999999998875432 22234568899999998521
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~ 516 (570)
-...++++|+++|.++ +++.+. |||+..+.++.|+.+.. ..+...++....
T Consensus 183 ------------------~~~~~v~vI~atn~~~~ld~al~-rRf~~~i~i~~P~~~~r-------~~il~~~l~~~~-- 234 (355)
T 2qp9_X 183 ------------------NDSQGVLVLGATNIPWQLDSAIR-RRFERRIYIPLPDLAAR-------TTMFEINVGDTP-- 234 (355)
T ss_dssp ---------------------CCEEEEEEESCGGGSCHHHH-HTCCEEEECCCCCHHHH-------HHHHHHHHTTSC--
T ss_pred ------------------ccCCCeEEEeecCCcccCCHHHH-cccCEEEEeCCcCHHHH-------HHHHHHHHhhCC--
Confidence 1234688999999886 555555 48999999999886651 112222221110
Q ss_pred hHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 517 dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..+.+..+..+.. ....++..||..++.+..
T Consensus 235 ----~~~~~~~l~~la~--~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 235 ----SVLTKEDYRTLGA--MTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp ----BCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 0133444443321 236788999999998865
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=1.6e-16 Score=158.57 Aligned_cols=171 Identities=25% Similarity=0.353 Sum_probs=115.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.|+|++++++.|.+.+...... .+..... ..+.++||+||||||||++|+++|+.++
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGI---------------------EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC---------------------CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---------------------CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3899999999999988643221 1111100 1236899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+++.+++.++. ..++|+. ...+...+..+. ...++||||||+|.+.+++.+...+.+.........++..+++
T Consensus 77 ~~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 77 ATFIRVVGSELV-KKFIGEG-ASLVKDIFKLAK----EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CEEEEEEGGGGC-CCSTTHH-HHHHHHHHHHHH----HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred CCEEEEehHHHH-HhccchH-HHHHHHHHHHHH----HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 999999999887 4577765 556666666543 2467899999999998765432222222222233344444443
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
.. ...++++|+++|..+ +++.+. +.||+..+.++.|+.+.
T Consensus 151 ~~-------------------~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 151 FD-------------------ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp TC-------------------SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred CC-------------------CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 11 134688899998876 444443 33888889998887654
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.70 E-value=8.9e-17 Score=175.02 Aligned_cols=172 Identities=24% Similarity=0.309 Sum_probs=123.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|+|++++|+.|.+.+.. ++.. ..++.+.... +.++||+||||||||++|+++|+.++.+
T Consensus 17 di~G~~~~~~~l~e~v~~-l~~~------------------~~~~~~g~~~-p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEF-LKDP------------------SKFNRIGARM-PKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp GCCSCHHHHHHHHHHHHH-HHCT------------------HHHHTTTCCC-CSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCcHHHHHHHHHHHHH-hhCh------------------HHHhhcCCCC-CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 389999999999998752 2210 0011122222 2579999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.++++++.. .++|.. ...++.+|..+.. ..++||||||+|.+..++.....+.+...+.+++.|+..|++..
T Consensus 77 f~~is~~~~~~-~~~g~~-~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 77 FFHISGSDFVE-LFVGVG-AARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp EEEEEGGGTTT-CCTTHH-HHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred eeeCCHHHHHH-HHhccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 99999999874 577776 5667788777642 47899999999999887654333445555678899999998521
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHH-HhcccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTI-SERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l-~~Rrfd~~I~f~~p~~e~ 494 (570)
...++++|+++|.++ +++++ +.+||+..|.++.|+.+.
T Consensus 151 -------------------~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 151 -------------------SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190 (476)
T ss_dssp -------------------GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred -------------------CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHH
Confidence 134688999999877 44444 346999999999988654
No 22
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=165.15 Aligned_cols=169 Identities=24% Similarity=0.368 Sum_probs=121.4
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
|.|.+++|+.|.+.+...+.+. .+++++++..+. +++|+||||||||+|++++|..++.++
T Consensus 12 i~g~~~~~~~l~~~i~~~~~~~------------------~~l~~~~l~~~~-GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 12 IGALEDIREELTMAILAPVRNP------------------DQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp CCHHHHHHHHHHHHHTHHHHSH------------------HHHHHTTCCCCS-EEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHhhCH------------------HHHHHcCCCCCC-eEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 8999999999999886554431 123444555554 499999999999999999999999999
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCee
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v 438 (570)
+.+++.++. ..++|+. .+.+..+|+.+.. ..++++|+||+|.+...+..... + ...++.+.++..|+|..
T Consensus 73 i~i~g~~l~-~~~~~~~-~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~--~-~~~~~~~~~l~~Lsgg~- 142 (274)
T 2x8a_A 73 ISVKGPELL-NMYVGES-ERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRET--G-ASVRVVNQLLTEMDGLE- 142 (274)
T ss_dssp EEEETTTTC-SSTTHHH-HHHHHHHHHHHHH----TCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCC-
T ss_pred EEEEcHHHH-hhhhhHH-HHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcc--h-HHHHHHHHHHHhhhccc-
Confidence 999998886 3467765 5667777776532 46899999999998765432211 1 11247788999998632
Q ss_pred eecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 439 ~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
....+++++++|.++ +++++. .+||+..|.++.|+.+.
T Consensus 143 ------------------~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 143 ------------------ARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp ------------------STTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred ------------------ccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 123467778888877 555554 35999999999998765
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=166.58 Aligned_cols=213 Identities=22% Similarity=0.284 Sum_probs=134.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+++.|.+.+.....+... .. .+..+..++||+||||||||++|+++|+.++.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~------------------~~--~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPEL------------------FT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT------------------SC--GGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHH------------------hc--ccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4899999999999988643331000 00 011234789999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
|+.++++++. ..|+|+. ...++.+|..+.. ..++||||||||.+...+... ......++++.|+..|++..
T Consensus 176 ~~~v~~~~l~-~~~~g~~-~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 176 FFNISAASLT-SKYVGEG-EKLVRALFAVARE----LQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEEECSCCC--------C-HHHHHHHHHHHHH----SSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC
T ss_pred EEEeeHHHhh-ccccchH-HHHHHHHHHHHHh----cCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhccc
Confidence 9999999987 4578776 5667777766542 467899999999997765421 22234568899999998532
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHh-hcCh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLME-TVES 515 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~-~l~~ 515 (570)
. ....++++|+++|..+ +++.+. +||+..|.|+.|+.+.. ..++. .+..
T Consensus 247 ~-----------------~~~~~v~vI~atn~~~~l~~~l~-~R~~~~i~i~~p~~~~r-----------~~il~~~~~~ 297 (389)
T 3vfd_A 247 S-----------------AGDDRVLVMGATNRPQELDEAVL-RRFIKRVYVSLPNEETR-----------LLLLKNLLCK 297 (389)
T ss_dssp ----------------------CEEEEEEESCGGGCCHHHH-TTCCEEEECCCCCHHHH-----------HHHHHHHHTT
T ss_pred c-----------------cCCCCEEEEEecCCchhcCHHHH-cCcceEEEcCCcCHHHH-----------HHHHHHHHHh
Confidence 1 1134588999998876 555554 48888888988876551 12221 1111
Q ss_pred hhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 516 SDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 516 ~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
. ...+.++.+..+.. ....++..++..++.+..
T Consensus 298 ~---~~~l~~~~~~~la~--~~~g~~~~~l~~L~~~a~ 330 (389)
T 3vfd_A 298 Q---GSPLTQKELAQLAR--MTDGYSGSDLTALAKDAA 330 (389)
T ss_dssp S---CCCSCHHHHHHHHH--HTTTCCHHHHHHHHHHHT
T ss_pred c---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 0 11245555554421 246688888888877654
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.69 E-value=1e-16 Score=172.45 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=138.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhh--hhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMR--IYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r--~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l- 354 (570)
+|+|++.+++.|.+++...... ++.. ...++.++||+||||||||++|+++|+.+
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~----------------------~~~~~~~vLL~GppGtGKT~lA~aia~~~~ 192 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTG----------------------KRTPWRGILLFGPPGTGKSYLAKAVATEAN 192 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSG----------------------GGCCCSEEEEECSTTSSHHHHHHHHHHHCC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhc----------------------cCCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4899999999999988533221 1110 01234789999999999999999999999
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+.+|+.++++++. ..|+|+. ...++.+|..+. ...++||||||||.+.+.+... ......++++.|+..|+
T Consensus 193 ~~~~~~v~~~~l~-~~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 193 NSTFFSISSSDLV-SKWLGES-EKLVKNLFQLAR----ENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp SSEEEEECCC----------C-CCTHHHHHHHHH----HSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTT
T ss_pred CCCEEEEeHHHHH-hhhcchH-HHHHHHHHHHHH----HcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHh
Confidence 8899999999987 4688876 566777776654 2578999999999998765432 12234568899999998
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhh-
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMET- 512 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~- 512 (570)
+.. ....+++||+++|.++ +++.+. |||+..+.++.|+.+. ...++..
T Consensus 264 ~~~------------------~~~~~v~vI~atn~~~~ld~al~-rRf~~~i~i~~P~~~~-----------r~~il~~~ 313 (444)
T 2zan_A 264 GVG------------------VDNDGILVLGATNIPWVLDSAIR-RRFEKRIYIPLPEAHA-----------RAAMFRLH 313 (444)
T ss_dssp CSS------------------CCCSSCEEEEEESCGGGSCHHHH-TTCCEEEECCCCCHHH-----------HHHHHHHH
T ss_pred Ccc------------------cCCCCEEEEecCCCccccCHHHH-hhcceEEEeCCcCHHH-----------HHHHHHHH
Confidence 531 1245688999999887 555544 5899999999998764 1222221
Q ss_pred cChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 513 VESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 513 l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
+... ...+.+..+..+.. ....++..||..++.+..
T Consensus 314 l~~~---~~~l~~~~l~~la~--~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 314 LGST---QNSLTEADFQELGR--KTDGYSGADISIIVRDAL 349 (444)
T ss_dssp HTTS---CEECCHHHHHHHHH--HTTTCCHHHHHHHHHHHH
T ss_pred HhcC---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 1110 00133444443321 246789999999988865
No 25
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=4.8e-16 Score=153.47 Aligned_cols=172 Identities=23% Similarity=0.324 Sum_probs=119.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+++.|.+.+.. .... ..++...... +.+++|+||||||||++|+++|+.++.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~-~~~~------------------~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEY-LREP------------------SRFQKLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp GSCSCHHHHHHTHHHHHH-HHCG------------------GGC-----CC-CCEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred HhcCcHHHHHHHHHHHHH-HhCH------------------HHHHHcCCCC-CCeEEEECcCCCCHHHHHHHHHHHcCCC
Confidence 389999999999987742 1110 0011111112 3579999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++++.. .+.|+. ...++..|..+.. ..++++||||+|.+...+...-.+.......+++.++..|++..
T Consensus 73 ~~~i~~~~~~~-~~~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 73 FFTISGSDFVE-MFVGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp EEEECSCSSTT-SCCCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred EEEEeHHHHHH-Hhhhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 99999998873 467765 5667777766532 45789999999999876543222222333457888999988521
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
...++++|+++|.++ +++.+. .+||+..+.++.|+.+.
T Consensus 147 -------------------~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~ 186 (257)
T 1lv7_A 147 -------------------GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186 (257)
T ss_dssp -------------------SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred -------------------cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence 234578888888876 444443 34899999998887654
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.69 E-value=3.7e-16 Score=163.11 Aligned_cols=214 Identities=23% Similarity=0.328 Sum_probs=141.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+++.|.+.+.....+... +. .....+.++||+||||||||++|+++|+.++.+
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~------------------~~--~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDI------------------FT--GLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTT------------------SC--GGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhChHh------------------Hh--hccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 5899999999999988643321000 00 011234789999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++++. ..++|+. ...++.+|..+. ...++||||||||.+...+.. +.+....++++.|+..|++..
T Consensus 145 ~~~i~~~~l~-~~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 145 FFSISASSLT-SKWVGEG-EKMVRALFAVAR----CQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EEEEEGGGGC-CSSTTHH-HHHHHHHHHHHH----HTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC--
T ss_pred EEEEehHHhh-ccccchH-HHHHHHHHHHHH----hcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhccc
Confidence 9999999987 4577775 566677766553 256899999999999876542 122334568899999998532
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~ 516 (570)
. -...++++|+++|..+ +++.+. +||+..+.++.|+.+.. ..+...+....
T Consensus 216 ~-----------------~~~~~v~vI~atn~~~~l~~~l~-~Rf~~~i~i~~p~~~~r-------~~il~~~~~~~--- 267 (357)
T 3d8b_A 216 T-----------------SSEDRILVVGATNRPQEIDEAAR-RRLVKRLYIPLPEASAR-------KQIVINLMSKE--- 267 (357)
T ss_dssp -------------------CCCCEEEEEEESCGGGBCHHHH-TTCCEEEECCCCCHHHH-------HHHHHHHHHTS---
T ss_pred c-----------------cCCCCEEEEEecCChhhCCHHHH-hhCceEEEeCCcCHHHH-------HHHHHHHHhhc---
Confidence 1 1134688899988876 555555 48888888888876541 11111221111
Q ss_pred hHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 517 dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
...+.++.+..+.. ....++..++..++.+..
T Consensus 268 ---~~~l~~~~l~~la~--~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 268 ---QCCLSEEEIEQIVQ--QSDAFSGADMTQLCREAS 299 (357)
T ss_dssp ---CBCCCHHHHHHHHH--HTTTCCHHHHHHHHHHHH
T ss_pred ---CCCccHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 11245555554422 246788888888888754
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.68 E-value=1e-16 Score=174.94 Aligned_cols=168 Identities=23% Similarity=0.369 Sum_probs=126.4
Q ss_pred ccCChHHHHHHHHHHHHhhhh--hhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 278 FVIGQERAKKVLSVAVYNHYM--RIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~--r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.|+|++.+++.|.+.+..... .++.....+ .+.++||+||||||||++|+++|+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~---------------------~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVK---------------------PPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC---------------------CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---------------------CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 489999999999999864322 122211111 236899999999999999999999999
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.+|+.++|+++. ..+.|+. ...++..|..+.. ..++||||||||.+.++++.. .......+++.|+..|++
T Consensus 264 ~~fv~vn~~~l~-~~~~g~~-~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~ 334 (489)
T 3hu3_A 264 AFFFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDG 334 (489)
T ss_dssp SEEEEEEHHHHH-TSCTTHH-HHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEchHhh-hhhcchh-HHHHHHHHHHHHh----cCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhc
Confidence 999999999987 5688876 6677888877643 467999999999999875432 122334689999999995
Q ss_pred CeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 436 TVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 436 ~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
.. ...++++|+++|.++ +++.+.+ +||+..|.|+.|+.+.
T Consensus 335 ~~-------------------~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 335 LK-------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp SC-------------------TTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred cc-------------------cCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 21 234688999999876 5555554 5999999999988765
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=5.4e-16 Score=155.82 Aligned_cols=215 Identities=22% Similarity=0.306 Sum_probs=140.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+++.|.+.+.....+..... .+..++.++||+||||||||++|+++|+.++.+
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~--------------------~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFT--------------------GLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSC--------------------GGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHh--------------------cCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 389999999999998864332100000 011134789999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++++. ..++|+. ...++..+..+. ...++||||||+|.+...+.... ......+++.|+..+++..
T Consensus 82 ~~~i~~~~l~-~~~~~~~-~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 82 FLNISAASLT-SKYVGDG-EKLVRALFAVAR----HMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp EEEEESTTTS-SSSCSCH-HHHHHHHHHHHH----HTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC
T ss_pred eEEeeHHHHh-hcccchH-HHHHHHHHHHHH----HcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhccc
Confidence 9999999877 4577765 566666666543 25789999999999987654321 2223457888999998531
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESS 516 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~ 516 (570)
. .....++++|+++|.++ +++.+.+ ||+..+.++.|+.+.. ..+...+.+..
T Consensus 153 ~----------------~~~~~~v~vi~~tn~~~~l~~~l~~-R~~~~i~~~~p~~~~r-------~~il~~~~~~~--- 205 (297)
T 3b9p_A 153 G----------------NPDGDRIVVLAATNRPQELDEAALR-RFTKRVYVSLPDEQTR-------ELLLNRLLQKQ--- 205 (297)
T ss_dssp ----------------------CEEEEEEESCGGGBCHHHHH-HCCEEEECCCCCHHHH-------HHHHHHHHGGG---
T ss_pred c----------------cCCCCcEEEEeecCChhhCCHHHHh-hCCeEEEeCCcCHHHH-------HHHHHHHHHhc---
Confidence 1 00124578888888775 5555554 8888899988876541 11112222111
Q ss_pred hHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 517 DLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 517 dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
...+.++.+..+.. ....++..++..++.+..
T Consensus 206 ---~~~~~~~~~~~la~--~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 206 ---GSPLDTEALRRLAK--ITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp ---SCCSCHHHHHHHHH--HTTTCCHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHHH--HcCCCCHHHHHHHHHHHH
Confidence 11245666655432 236788888888887654
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.67 E-value=7.9e-16 Score=168.46 Aligned_cols=172 Identities=26% Similarity=0.355 Sum_probs=124.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+|+|++++|+.|.+.+.. +.. +..++++++.++. +++|+||||||||+||++||..++.+
T Consensus 32 dv~G~~~~k~~l~~lv~~-l~~------------------~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEF-LKN------------------PSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHC------------------GGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred HcCCcHHHHHHHHHHHHH-hhc------------------hhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999988752 221 1234445555554 59999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++++.. .++|.. ...++.+|+.+.. ..++|+||||||.+...+.....+.+...+.+.+.|+..|+|..
T Consensus 92 ~i~i~g~~~~~-~~~g~~-~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 92 FITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp EEEEEGGGGTS-SCTTHH-HHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred EEEEehhHHHH-hhhhhH-HHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 99999999873 467765 5667788877642 35789999999999876542111122223457788888888531
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
....+++++++|.++ +++.+. ++||+..|.++.|+.+.
T Consensus 166 -------------------~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 166 -------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp -------------------SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred -------------------cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHH
Confidence 123477888888877 444443 45999999999998754
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.67 E-value=5.9e-16 Score=151.80 Aligned_cols=216 Identities=20% Similarity=0.250 Sum_probs=125.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+|+.|.+.+.. .... . .+..... ..+.++||+||||||||++|+++|+.++.+
T Consensus 7 ~i~G~~~~~~~l~~~~~~-~~~~-~-----------------~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDY-LKSP-E-----------------RFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp SSCSCHHHHHHHHHHHHH-HHCC-C-----------------------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHH-HHCH-H-----------------HHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 389999999999988752 1100 0 0000000 123689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCC-CCchHHHHHHHHHHHcCC
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISR-DVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~-~~~~e~vq~~LL~~LEg~ 436 (570)
++.++++++. ..+.|+. ...++.+|..+.. ..++||||||+|.+...+.....+. +.......+.|+..+++.
T Consensus 67 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 67 FLAMAGAEFV-EVIGGLG-AARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp EEEEETTTTS-SSSTTHH-HHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred EEEechHHHH-hhccChh-HHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 9999999876 3466654 5566666665532 4579999999999987653321110 111123556677777742
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhhhhcCCCChHHHHHHHHhhcC
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~ 514 (570)
. ...++++|+++|..+ +++.+. .+||+..+.++.|+.+.. ..+.........
T Consensus 141 ~-------------------~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r-------~~il~~~~~~~~ 194 (262)
T 2qz4_A 141 G-------------------TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER-------REIFEQHLKSLK 194 (262)
T ss_dssp C-------------------TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHH-------HHHHHHHHHHTT
T ss_pred C-------------------CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHH-------HHHHHHHHHhCC
Confidence 1 134688889988876 433333 238999999988876541 112222222111
Q ss_pred hhhHHhcCCChhH-hcccCeEEecCCCCHHHHHHHhcchh
Q 008329 515 SSDLIAYGLIPEF-VGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 515 ~~dl~~~gl~Pef-l~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
....+++ ...+.. ....++..++..++.+..
T Consensus 195 ------~~~~~~~~~~~l~~--~~~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 195 ------LTQSSTFYSQRLAE--LTPGFSGADIANICNEAA 226 (262)
T ss_dssp ------CCBTHHHHHHHHHH--TCTTCCHHHHHHHHHHHH
T ss_pred ------CCcchhhHHHHHHH--HCCCCCHHHHHHHHHHHH
Confidence 0122222 222211 235688888888888755
No 31
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=3.7e-16 Score=177.99 Aligned_cols=190 Identities=21% Similarity=0.284 Sum_probs=129.1
Q ss_pred HHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHH
Q 008329 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (570)
Q Consensus 269 ~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAr 348 (570)
..+.+.+.+.|+||+.+++.|..++...... ...+. .+.+++||+||||||||++|+
T Consensus 483 ~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~------------~~~~~-----------~p~~~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 483 LNMENILHSRVIGQDEAVVAVAKAVRRARAG------------LKDPK-----------RPIGSFIFLGPTGVGKTELAR 539 (758)
T ss_dssp -CHHHHHHTTSCSCHHHHHHHHHHHHHHTTT------------CSCTT-----------SCSEEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHhCcCcChHHHHHHHHHHHHHHHcc------------cCCCC-----------CCceEEEEECCCCCCHHHHHH
Confidence 3466778888999999999999988632211 00010 112479999999999999999
Q ss_pred HHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 349 TLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 349 aLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
++|+.+ +.+++.++++++.+. +... ...+.+.+. ...++||||||||++.+. +
T Consensus 540 ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~~~~-------~~~~~vl~lDEi~~~~~~--------------~ 595 (758)
T 3pxi_A 540 ALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTEKVR-------RKPYSVVLLDAIEKAHPD--------------V 595 (758)
T ss_dssp HHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHHHHH-------HCSSSEEEEECGGGSCHH--------------H
T ss_pred HHHHHhcCCCcceEEEechhcccc-cccc--cchhhHHHH-------hCCCeEEEEeCccccCHH--------------H
Confidence 999998 678999999998743 2221 111222211 235689999999999876 9
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHH
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~ 505 (570)
++.|+++||+..+.. .. ...++..|+++|+|+|...-. ....
T Consensus 596 ~~~Ll~~le~g~~~~--------~~--g~~~~~~~~~iI~ttn~~~~~----------------------------~~~~ 637 (758)
T 3pxi_A 596 FNILLQVLEDGRLTD--------SK--GRTVDFRNTILIMTSNVGASE----------------------------KDKV 637 (758)
T ss_dssp HHHHHHHHHHSBCC---------------CCBCTTCEEEEEESSSTTC----------------------------CHHH
T ss_pred HHHHHHHhccCeEEc--------CC--CCEeccCCeEEEEeCCCChhh----------------------------HHHH
Confidence 999999999543321 11 124567889999999864310 0000
Q ss_pred HHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 506 ~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.. .....+.|+|++||+.++.+.+++++++.+|+....
T Consensus 638 ~~----------~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 638 MG----------ELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HH----------HHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HH----------HHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 01 112237899999999999999999999999998755
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.66 E-value=1.8e-16 Score=161.29 Aligned_cols=148 Identities=13% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhh
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~ 409 (570)
+.++||+||||||||++|+++|+.++.+++.++++++. ..|+|+. ...+++.|..+........++||||||||++.+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 36889999999999999999999999999999999987 5688886 667788887764333345789999999999988
Q ss_pred hhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hccccccccc
Q 008329 410 KAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGF 487 (570)
Q Consensus 410 ~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f 487 (570)
.+... .........+++.|+++||+...... .+........++++|+|||..+ +++++. .+||+..|.+
T Consensus 114 ~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~--------~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~ 184 (293)
T 3t15_A 114 RMGGT-TQYTVNNQMVNATLMNIADNPTNVQL--------PGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC
T ss_pred CCCCC-ccccchHHHHHHHHHHHhcccccccc--------ccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC
Confidence 54422 12222345688999999995321110 0000122456789999999877 555554 3689888865
Q ss_pred C
Q 008329 488 G 488 (570)
Q Consensus 488 ~ 488 (570)
|
T Consensus 185 P 185 (293)
T 3t15_A 185 P 185 (293)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=3.1e-16 Score=172.97 Aligned_cols=177 Identities=22% Similarity=0.279 Sum_probs=107.6
Q ss_pred CChHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHH
Q 008329 266 PTPKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTL 345 (570)
Q Consensus 266 ~~p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTt 345 (570)
....+..+.++++++|++.+++.+.+.+..... +...+..+++|+||||||||+
T Consensus 70 ~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~--------------------------~~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 70 LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKL--------------------------TKSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHH--------------------------SSSCCSCEEEEESSSSSSHHH
T ss_pred ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh--------------------------cccCCCCEEEEECCCCCCHHH
Confidence 344556677888899999999999876642111 122234688999999999999
Q ss_pred HHHHHHHHhCCcEEEeecccccc--------cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccC
Q 008329 346 LAKTLARYVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNIS 417 (570)
Q Consensus 346 LAraLA~~lg~~fv~i~~s~l~~--------~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~ 417 (570)
+|+++|+.++.++..+++..+.. ..|+|.. ...+...|..+. ...+|+||||||++.+++..
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~~---- 193 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFRG---- 193 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTTC-----SSSEEEEEEESSSCC---------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhcc----
Confidence 99999999999999999877442 1344443 222334444432 24569999999999876321
Q ss_pred CCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhh
Q 008329 418 RDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVR 492 (570)
Q Consensus 418 ~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~ 492 (570)
..++.||++||+.. ...+...+....++..+++||+|+|..+ +++++.+ |++ .|.|+.|+.
T Consensus 194 ------~~~~~LL~~ld~~~------~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~-R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 194 ------DPSSAMLEVLDPEQ------NSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD-RME-IINIAGYTE 255 (543)
T ss_dssp ----------CCGGGTCTTT------TTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH-HEE-EEECCCCCH
T ss_pred ------CHHHHHHHHHhhhh------cceeecccCCeeecccceEEEeccCccccCCHHHHh-hcc-eeeeCCCCH
Confidence 16788999998432 1222333334456678899999999765 3333333 332 355555543
No 34
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.63 E-value=1.8e-15 Score=174.79 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=132.9
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHH
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTL 350 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraL 350 (570)
+.+.+.+.|+||+.+++.|..++...... ...+. .+..++||+||||||||++|+++
T Consensus 552 l~~~l~~~viG~~~a~~~l~~~i~~~~~g------------~~~~~-----------~p~~~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 552 LEEELHKRVVGQDEAIRAVADAIRRARAG------------LKDPN-----------RPIGSFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHGGG------------CSCSS-----------SCSEEEEEBSCSSSSHHHHHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHHHHHHhcc------------cCCCC-----------CCceEEEEECCCCCCHHHHHHHH
Confidence 44556677999999999999988522211 00110 12258999999999999999999
Q ss_pred HHHh---CCcEEEeeccccccc-----------ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhccc
Q 008329 351 ARYV---NVPFVIADATTLTQA-----------GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (570)
Q Consensus 351 A~~l---g~~fv~i~~s~l~~~-----------g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~ 416 (570)
++.+ +.+++.++|+++... +|+|......+.+.+ ....++|||||||+++.+.
T Consensus 609 a~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~-------~~~~~~vl~lDEi~~l~~~------ 675 (854)
T 1qvr_A 609 AATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDEIEKAHPD------ 675 (854)
T ss_dssp HHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHH-------HHCSSEEEEESSGGGSCHH------
T ss_pred HHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHH-------HhCCCeEEEEecccccCHH------
Confidence 9998 789999999886542 233432111222221 1235689999999999876
Q ss_pred CCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhh
Q 008329 417 SRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMR 496 (570)
Q Consensus 417 ~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~ 496 (570)
+++.|+++||+..+. . .....++..|+++|+|+|... ....... +.+.
T Consensus 676 --------~~~~Ll~~l~~~~~~--------~--~~g~~vd~~~~iiI~tsn~~~-~~~~~~~------~~~~------- 723 (854)
T 1qvr_A 676 --------VFNILLQILDDGRLT--------D--SHGRTVDFRNTVIILTSNLGS-PLILEGL------QKGW------- 723 (854)
T ss_dssp --------HHHHHHHHHTTTEEC--------C--SSSCCEECTTEEEEEECCTTH-HHHHHHH------HTTC-------
T ss_pred --------HHHHHHHHhccCceE--------C--CCCCEeccCCeEEEEecCcCh-HHHhhhc------cccc-------
Confidence 999999999954432 1 123367889999999999742 1111100 0000
Q ss_pred cCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 497 AGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 497 ~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..+...+.+.+ ..+..|.|+|++|++.++.+.+++.+++.+|+....
T Consensus 724 ----~~~~l~~~v~~------~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 724 ----PYERIRDEVFK------VLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQL 770 (854)
T ss_dssp ----CHHHHHHHHHH------HHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHH------HHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHH
Confidence 00111111211 124458899999999999999999999999987654
No 35
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.61 E-value=1.4e-14 Score=148.05 Aligned_cols=155 Identities=23% Similarity=0.303 Sum_probs=99.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|++.+++.|..++.....+ . ....++||+||||||||++|+++|+.++.+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~------~---------------------~~~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKR------N---------------------ECLDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHT------T---------------------SCCCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHHHHhc------C---------------------CCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 3899999999999888532210 0 012689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.+++..+.. ...+...+... ..+++||||||+.+.+. +++.|+..|++..
T Consensus 83 ~~~~~~~~~~~--------~~~~~~~~~~~------~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 83 IKTTAAPMIEK--------SGDLAAILTNL------SEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYR 134 (338)
T ss_dssp EEEEEGGGCCS--------HHHHHHHHHTC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSC
T ss_pred eEEecchhccc--------hhHHHHHHHhc------cCCCEEEEechhhcCHH--------------HHHHHHHHHHhcc
Confidence 99999876542 12233333322 46789999999999865 8999999999654
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPV 491 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~ 491 (570)
+.+.... ......+.++..++++|+++|..+ +.+.+. +|++..+.++.|+
T Consensus 135 ~~~~~~~---~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~-~R~~~~i~l~~~~ 185 (338)
T 3pfi_A 135 LDIIIGS---GPAAQTIKIDLPKFTLIGATTRAGMLSNPLR-DRFGMQFRLEFYK 185 (338)
T ss_dssp C------------CCCCCCCCCCCEEEEEESCGGGSCHHHH-TTCSEEEECCCCC
T ss_pred chhhccc---CccccceecCCCCeEEEEeCCCccccCHHHH-hhcCEEeeCCCcC
Confidence 3221000 000111233344688899888654 222222 2344444444443
No 36
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.60 E-value=5e-15 Score=148.47 Aligned_cols=172 Identities=26% Similarity=0.356 Sum_probs=112.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++++++.+...+.. +.. ..+++++++.++. +++|+||||||||+++++++..++.+
T Consensus 41 ~i~g~~~~~~~l~~l~~~-~~~------------------~~~l~~~~~~~~~-gvll~Gp~GtGKTtl~~~i~~~~~~~ 100 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEF-LKN------------------PSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVP 100 (278)
T ss_dssp GSSSCHHHHHHHHHHHHH-HHC------------------HHHHHHTTCCCCC-EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HhCChHHHHHHHHHHHHH-HHC------------------HHHHHHcCCCCCC-eEEEECCCcChHHHHHHHHHHHcCCC
Confidence 489999999999887642 221 0123344555554 49999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.+++.++.. .+.++. ...+..+|+.+.. ..++++++||+|.+...+...............+.++..|+|..
T Consensus 101 ~i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 101 FITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp EEEEEHHHHHH-STTTHH-HHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred EEEecHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 99999887653 244443 3445556655431 35789999999998765432110111122345667777777531
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
....++++++++.++ +++.+.+ .||+..+.++.|+.+.
T Consensus 175 -------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 175 -------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp -------------------TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred -------------------CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 122356677777766 5555554 4899999999998754
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.59 E-value=5.5e-17 Score=186.71 Aligned_cols=172 Identities=24% Similarity=0.299 Sum_probs=124.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCccc-ccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVE-LEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~-i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
.++|++.+|+.|.+.+.....+. . ...++. .++.++||+||||||||++|+++|+.++.
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~------------------~--~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHP------------------D--KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSC------------------T--TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhHHHHHHhhhhch------------------H--HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 48999999999988774221110 0 001111 13468999999999999999999999999
Q ss_pred cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCC
Q 008329 357 PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 357 ~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~ 436 (570)
+++.++++++. ..|+|+. ...++.+|..+.. ..++||||||||++...+.......+....++++.||..|++.
T Consensus 538 ~~i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~----~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 538 NFISIKGPELL-TMWFGES-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp CCCCCCCSSST-TCCTTTS-SHHHHHHHHHHHH----HCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred CEEEEechHhh-hhhcCcc-HHHHHHHHHHHHh----cCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 99999999987 5689987 6778888887653 4679999999999987764322111223456888999999853
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
. ...++++|+|||.++ +++++.+ +||+..|.|+.|+.+.
T Consensus 612 ~-------------------~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~ 652 (806)
T 1ypw_A 612 S-------------------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp -----------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSH
T ss_pred c-------------------ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHH
Confidence 1 345788999999876 5555543 4999999999998765
No 38
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.59 E-value=1.8e-16 Score=157.05 Aligned_cols=171 Identities=25% Similarity=0.377 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHHhh-hhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 279 VIGQERAKKVLSVAVYNH-YMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~-~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
|+|++.+++.|.+++... +...+.....+ .+.++||+||||||||++|+++|+.++.+
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAK---------------------IPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHHSCC---------------------CCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHCCCC---------------------CCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 899999999999877521 11111111100 12579999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhccc-CCCCchHHHHHHHHHHHcCC
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI-SRDVSGEGVQQALLKMLEGT 436 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~-~~~~~~e~vq~~LL~~LEg~ 436 (570)
++.++++++.. .+.|.. ...++..|..+. ...++||||||+|.+...+...+. ..+.....+++.|+..|++.
T Consensus 72 ~~~v~~~~~~~-~~~~~~-~~~~~~~~~~a~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 72 FFSMGGSSFIE-MFVGLG-ASRVRDLFETAK----KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp CCCCCSCTTTT-SCSSSC-SSSSSTTHHHHH----HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred EEEechHHHHH-hhcchH-HHHHHHHHHHHH----hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 99999988763 456654 233334444332 235789999999999876532211 11111122456677777642
Q ss_pred eeeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHH-hcccccccccCchhhhh
Q 008329 437 VVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTIS-ERRQDSSIGFGAPVRAN 494 (570)
Q Consensus 437 ~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~-~Rrfd~~I~f~~p~~e~ 494 (570)
. -...++++|+++|.++ ++..+. ++||+..+.|+.|+.+.
T Consensus 146 ~------------------~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 146 G------------------SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp S------------------CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred c------------------cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 1 0234578899999887 443333 34899999999988765
No 39
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.58 E-value=1.1e-14 Score=143.35 Aligned_cols=171 Identities=26% Similarity=0.362 Sum_probs=112.6
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
|+|+++++..+...+.. +... ..++++++.++. +++|+||||||||++++++++.++.++
T Consensus 18 i~g~~~~~~~l~~l~~~-~~~~------------------~~~~~~~~~~~~-g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 18 VAGAEEAKEELKEIVEF-LKNP------------------SRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp CCSCHHHHHHHHHHHHH-HHCH------------------HHHHHTTCCCCS-EEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hCCcHHHHHHHHHHHHH-HHCH------------------HHHHHcCCCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 89999999999887642 2210 122334455554 499999999999999999999999999
Q ss_pred EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCee
Q 008329 359 VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVV 438 (570)
Q Consensus 359 v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v 438 (570)
+.+++.++.. .+.++. ...+..+|+.+.. ..++++++||+|.+...+.......+.......+.++..|+|..
T Consensus 78 i~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~- 150 (254)
T 1ixz_A 78 ITASGSDFVE-MFVGVG-AARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE- 150 (254)
T ss_dssp EEEEHHHHHH-SCTTHH-HHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-
T ss_pred EEeeHHHHHH-HHhhHH-HHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-
Confidence 9999887653 344543 4455666665431 35789999999999765432111112223446778888888531
Q ss_pred eecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 439 NVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 439 ~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
....++++++++.++ +++.+.+ .||+..+.++.|+.+.
T Consensus 151 ------------------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 151 ------------------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp ------------------TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred ------------------CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 122356677777766 4444443 3899999999998754
No 40
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.57 E-value=5.2e-15 Score=151.34 Aligned_cols=179 Identities=24% Similarity=0.285 Sum_probs=119.9
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
.+++...+.+.|+||+++++.+..++. ...++||+||||||||++|
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~----------------------------------~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGIC----------------------------------TGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHH----------------------------------HTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHH----------------------------------cCCeEEEECCCCCcHHHHH
Confidence 455677777889999999998887774 1268999999999999999
Q ss_pred HHHHHHhCCcEEEeeccc-ccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 348 KTLARYVNVPFVIADATT-LTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 348 raLA~~lg~~fv~i~~s~-l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+++|+.++.+++.++++. .....++|..........+.... ..-..+||||||++.+.+. ++
T Consensus 64 ~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~---g~l~~~vl~iDEi~~~~~~--------------~~ 126 (331)
T 2r44_A 64 NTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKK---GPVFSNFILADEVNRSPAK--------------VQ 126 (331)
T ss_dssp HHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEE---CTTCSSEEEEETGGGSCHH--------------HH
T ss_pred HHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEecc---CcccccEEEEEccccCCHH--------------HH
Confidence 999999999999988753 22122333211000000000000 0012479999999999876 89
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHH
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~ 506 (570)
+.|++.|++..+.+. |.. .-...++++|+|+|..+.. .
T Consensus 127 ~~Ll~~l~~~~~~~~--g~~--------~~~~~~~~viat~np~~~~--------------------~------------ 164 (331)
T 2r44_A 127 SALLECMQEKQVTIG--DTT--------YPLDNPFLVLATQNPVEQE--------------------G------------ 164 (331)
T ss_dssp HHHHHHHHHSEEEET--TEE--------EECCSSCEEEEEECTTCCS--------------------C------------
T ss_pred HHHHHHHhcCceeeC--CEE--------EECCCCEEEEEecCCCccc--------------------C------------
Confidence 999999997665551 111 1123457778887753200 0
Q ss_pred HHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcch
Q 008329 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFP 552 (570)
Q Consensus 507 ~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~ 552 (570)
.+.+.+.+++||...+.+..++.++..+||...
T Consensus 165 -------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~ 197 (331)
T 2r44_A 165 -------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRV 197 (331)
T ss_dssp -------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHH
T ss_pred -------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhc
Confidence 012668888898878888888888888888764
No 41
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.55 E-value=3.9e-15 Score=160.39 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=80.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
.|+||+++++.+...+..... . ..+++++||+||||||||++|+++|+.++
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~----~-----------------------~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKS----K-----------------------KMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHT----T-----------------------CCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hccCHHHHHHHHHHHHHHHHh----C-----------------------CCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 489999999998887742111 0 01236899999999999999999999998
Q ss_pred CcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhc
Q 008329 356 VPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESL 414 (570)
Q Consensus 356 ~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~ 414 (570)
.+|+.++++++. ..++|+. +. +++.|..+.. .....++||||||+|++.++|...
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~ 145 (456)
T 2c9o_A 91 VPFCPMVGSEVY-STEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETEN 145 (456)
T ss_dssp SCEEEEEGGGGC-CSSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC----
T ss_pred ceEEEEeHHHHH-HHhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCC
Confidence 899999999987 5688886 44 7888877621 112578999999999999887654
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.52 E-value=4.2e-14 Score=152.74 Aligned_cols=149 Identities=27% Similarity=0.343 Sum_probs=102.9
Q ss_pred ccCChHHHH---HHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 278 FVIGQERAK---KVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 278 ~ViGqd~ak---~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.|+||++++ +.|..++... ...++||+||||||||++|++|++.+
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~--------------------------------~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAG--------------------------------HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHT--------------------------------CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhCCcHHHHhchHHHHHHHHcC--------------------------------CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 389999999 7777777410 01579999999999999999999999
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+.+++.+++.... ...+++.+..+........++||||||||.+... .|+.|+..||
T Consensus 75 ~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le 131 (447)
T 3pvs_A 75 NADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIE 131 (447)
T ss_dssp TCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHH
T ss_pred CCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHh
Confidence 9999988865422 2334555554443333457899999999999765 7888999998
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcC
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVE 514 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~ 514 (570)
.. .+++|++++...
T Consensus 132 ~~-----------------------~v~lI~att~n~------------------------------------------- 145 (447)
T 3pvs_A 132 DG-----------------------TITFIGATTENP------------------------------------------- 145 (447)
T ss_dssp TT-----------------------SCEEEEEESSCG-------------------------------------------
T ss_pred cC-----------------------ceEEEecCCCCc-------------------------------------------
Confidence 32 245565554221
Q ss_pred hhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 515 SSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 515 ~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
...+.+.+++|+. ++.+.+++.+++.+++....
T Consensus 146 -----~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 146 -----SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp -----GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHH
T ss_pred -----ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHH
Confidence 0125678888875 56688889998888887654
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.52 E-value=4.5e-14 Score=129.36 Aligned_cols=163 Identities=19% Similarity=0.206 Sum_probs=105.5
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh--
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-- 354 (570)
+.++|++++++.+...+.. ....+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--------------------------------RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3479999999988887631 012689999999999999999999886
Q ss_pred --------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 355 --------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 355 --------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
+.+++.+++.++.. ..+.+.. ...+.+.+.... ....+.||+|||+|.+...+... .. ..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~vl~iDe~~~l~~~~~~~-~~-----~~~ 139 (195)
T 1jbk_A 70 GEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKAD-GA-----MDA 139 (195)
T ss_dssp TCSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHHH---HSTTTEEEEEETGGGGTT-------C-----CCC
T ss_pred CCCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHHh---hcCCCeEEEEeCHHHHhccCccc-ch-----HHH
Confidence 67788888776542 1233332 334444443221 12356799999999997653211 01 115
Q ss_pred HHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHH
Q 008329 426 QQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVV 505 (570)
Q Consensus 426 q~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~ 505 (570)
++.|..+++. .++.+|++++..+....
T Consensus 140 ~~~l~~~~~~-----------------------~~~~~i~~~~~~~~~~~------------------------------ 166 (195)
T 1jbk_A 140 GNMLKPALAR-----------------------GELHCVGATTLDEYRQY------------------------------ 166 (195)
T ss_dssp HHHHHHHHHT-----------------------TSCCEEEEECHHHHHHH------------------------------
T ss_pred HHHHHHhhcc-----------------------CCeEEEEeCCHHHHHHH------------------------------
Confidence 6777777762 23556666663211000
Q ss_pred HHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhc
Q 008329 506 TSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCH 550 (570)
Q Consensus 506 ~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~ 550 (570)
..+.+.+.+||. .+.+..++.++..+||.
T Consensus 167 ---------------~~~~~~l~~r~~-~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 167 ---------------IEKDAALERRFQ-KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp ---------------TTTCHHHHTTEE-EEECCCCCHHHHHTTCC
T ss_pred ---------------HhcCHHHHHHhc-eeecCCCCHHHHHHHhC
Confidence 025688999997 58899999999988874
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.51 E-value=2.9e-13 Score=136.94 Aligned_cols=157 Identities=23% Similarity=0.319 Sum_probs=101.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|++.+++.|...+...... . ....++||+||||||||++|+++++.++.+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~-----~----------------------~~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKAR-----K----------------------EPLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHH-----C----------------------SCCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred HhhCHHHHHHHHHHHHHHHHcc-----C----------------------CCCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3799999999998887522110 0 012689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++++.+.. ...+...+... ...+++|||||++.+... .++.|+..++...
T Consensus 66 ~~~~~~~~~~~--------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~ 118 (324)
T 1hqc_A 66 LRVTSGPAIEK--------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFV 118 (324)
T ss_dssp EEEECTTTCCS--------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSE
T ss_pred EEEEeccccCC--------hHHHHHHHHHh-----ccCCCEEEEECCcccccc--------------hHHHHHHHHHhhh
Confidence 99988877542 12233333331 146789999999999865 7888999999654
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHhcccccccccCchhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISERRQDSSIGFGAPVR 492 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~Rrfd~~I~f~~p~~ 492 (570)
+.+.... ......+.....++++|+++|..+ +.+.+ .+|++..+.++.|+.
T Consensus 119 ~~~v~~~---~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l-~~R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 119 MDIVIGQ---GPAARTIRLELPRFTLIGATTRPGLITAPL-LSRFGIVEHLEYYTP 170 (324)
T ss_dssp EEECCSS---SSSCCCEEEECCCCEEEEEESCCSSCSCST-TTTCSCEEECCCCCH
T ss_pred hHHhccc---cccccccccCCCCEEEEEeCCCcccCCHHH-HhcccEEEecCCCCH
Confidence 4332110 011112333445788888888654 22112 234444555555543
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.49 E-value=4.5e-14 Score=140.65 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=86.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchh---hHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDV---ESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~---~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.++||+||||||||++|+++|+.++.+++.+++++. +.|... ...++..+..+. ...++||||||||.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDAY----KSQLSCVVVDDIERL 136 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHHH----TSSEEEEEECCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHHH----hcCCcEEEEEChhhh
Confidence 689999999999999999999999999999988762 333321 233445554432 245789999999999
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHH-HHhcccccccc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKT-ISERRQDSSIG 486 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~-l~~Rrfd~~I~ 486 (570)
...+.. + ......+++.|+..+++.. -...++++|+++|.++..+. ...+||...|.
T Consensus 137 ~~~~~~---~-~~~~~~~l~~L~~~~~~~~------------------~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~ 194 (272)
T 1d2n_A 137 LDYVPI---G-PRFSNLVLQALLVLLKKAP------------------PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194 (272)
T ss_dssp TTCBTT---T-TBCCHHHHHHHHHHTTCCC------------------STTCEEEEEEEESCHHHHHHTTCTTTSSEEEE
T ss_pred hccCCC---C-hhHHHHHHHHHHHHhcCcc------------------CCCCCEEEEEecCChhhcchhhhhcccceEEc
Confidence 654221 1 1122347777777776321 01335778888887753332 34567777777
Q ss_pred cCchh
Q 008329 487 FGAPV 491 (570)
Q Consensus 487 f~~p~ 491 (570)
++...
T Consensus 195 ~p~l~ 199 (272)
T 1d2n_A 195 VPNIA 199 (272)
T ss_dssp CCCEE
T ss_pred CCCcc
Confidence 76443
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.49 E-value=5.8e-14 Score=127.97 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=88.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+.+.+.+.+.... ....++||+||||||||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------------------------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------------------------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------------------------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CceeCCHHHHHHHHHHHHHh------------------------------CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 37899999999988874111 123689999999999999999999987
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+.+|+ ++|+.+... . .....+. .+.+++|||||||.+.+. +|+.|+.+|+
T Consensus 52 ~~~~v-~~~~~~~~~----~----~~~~~~~-------~a~~g~l~ldei~~l~~~--------------~q~~Ll~~l~ 101 (145)
T 3n70_A 52 QGEFV-YRELTPDNA----P----QLNDFIA-------LAQGGTLVLSHPEHLTRE--------------QQYHLVQLQS 101 (145)
T ss_dssp TSCCE-EEECCTTTS----S----CHHHHHH-------HHTTSCEEEECGGGSCHH--------------HHHHHHHHHH
T ss_pred CCCEE-EECCCCCcc----h----hhhcHHH-------HcCCcEEEEcChHHCCHH--------------HHHHHHHHHh
Confidence 67899 999876532 1 1122222 235689999999999876 8889999996
Q ss_pred CCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccccc
Q 008329 435 GTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDS 483 (570)
Q Consensus 435 g~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~ 483 (570)
.. ..++.+|+++|.+ +++.+..++|+.
T Consensus 102 ~~---------------------~~~~~~I~~t~~~-~~~~~~~~~~~~ 128 (145)
T 3n70_A 102 QE---------------------HRPFRLIGIGDTS-LVELAASNHIIA 128 (145)
T ss_dssp SS---------------------SCSSCEEEEESSC-HHHHHHHSCCCH
T ss_pred hc---------------------CCCEEEEEECCcC-HHHHHHcCCCCH
Confidence 31 2346678888764 666666655543
No 47
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.47 E-value=1e-13 Score=159.52 Aligned_cols=170 Identities=23% Similarity=0.331 Sum_probs=123.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++++++.|.+.+.....+.. .++...+ .++.++||+||||||||++|+++|+.++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~------------------~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPA------------------LFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGG------------------GGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred HhCChHHHHHHHHHHHHHHhhCHH------------------HHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 489999999999999964333210 0111111 123689999999999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.+++.++. ..+.|+. ...++.+|+.+.. ..++++||||+|.+.+.+.. .......++++.|+.+|++..
T Consensus 266 ~i~v~~~~l~-~~~~g~~-~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 266 FFLINGPEIM-SKLAGES-ESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp EEEEEHHHHS-SSSTTHH-HHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSC
T ss_pred EEEEEchHhh-hhhhhhH-HHHHHHHHHHHHh----cCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhc
Confidence 9999998877 4567765 6677777776642 46899999999999876432 122233568899999999632
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCCC-hHHHHHh-cccccccccCchhhhh
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFVD-IEKTISE-RRQDSSIGFGAPVRAN 494 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~d-Le~~l~~-Rrfd~~I~f~~p~~e~ 494 (570)
...++++|+++|.++ +++.+.+ +||+..++++.|+.+.
T Consensus 337 -------------------~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 376 (806)
T 1ypw_A 337 -------------------QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp -------------------TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHH
T ss_pred -------------------ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHH
Confidence 124578888888865 5555543 4899999999887655
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.47 E-value=2.7e-13 Score=134.28 Aligned_cols=137 Identities=19% Similarity=0.299 Sum_probs=84.9
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC---
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN--- 355 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg--- 355 (570)
++|++.+++.+.+.+..... ...++||+||||||||++|+++++.+.
T Consensus 8 ~ig~~~~~~~~~~~~~~~~~------------------------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~ 57 (265)
T 2bjv_A 8 LLGEANSFLEVLEQVSHLAP------------------------------LDKPVLIIGERGTGKELIASRLHYLSSRWQ 57 (265)
T ss_dssp --CCCHHHHHHHHHHHHHTT------------------------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTT
T ss_pred ceeCCHHHHHHHHHHHHHhC------------------------------CCCCEEEECCCCCcHHHHHHHHHHhcCccC
Confidence 68999999988877741110 126899999999999999999999874
Q ss_pred CcEEEeeccccccc----ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHH
Q 008329 356 VPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 431 (570)
Q Consensus 356 ~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~ 431 (570)
.+++.++|+++... .+.|.. ..............+..+.+++||||||+.+... +|+.|++
T Consensus 58 ~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~--------------~q~~Ll~ 122 (265)
T 2bjv_A 58 GPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM--------------VQEKLLR 122 (265)
T ss_dssp SCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH--------------HHHHHHH
T ss_pred CCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH--------------HHHHHHH
Confidence 68999999886421 011110 0000000000111222345789999999999876 8999999
Q ss_pred HHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 432 MLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 432 ~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
+|+...+. ..+.. .....++.+|+++|..
T Consensus 123 ~l~~~~~~---------~~g~~-~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 123 VIEYGELE---------RVGGS-QPLQVNVRLVCATNAD 151 (265)
T ss_dssp HHHHCEEC---------CCCC---CEECCCEEEEEESSC
T ss_pred HHHhCCee---------cCCCc-ccccCCeEEEEecCcC
Confidence 99843221 11111 1124467888888864
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.46 E-value=1.5e-13 Score=139.86 Aligned_cols=105 Identities=22% Similarity=0.236 Sum_probs=73.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|++++++.|..++... ..+..+|+.||||||||++|+++|+.++.+
T Consensus 27 ~ivg~~~~~~~l~~~l~~~-------------------------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~ 75 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKG-------------------------------KIPHIILHSPSPGTGKTTVAKALCHDVNAD 75 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTT-------------------------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEE
T ss_pred HHhCcHHHHHHHHHHHHcC-------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC
Confidence 3899999999999888510 012456788889999999999999999999
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhh-hhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKIT-KKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~-~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
++.+++++... ..+...+.+...... ....+.||||||+|.+. .. .++.|++.|+.
T Consensus 76 ~~~i~~~~~~~-----~~i~~~~~~~~~~~~---~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~ 132 (324)
T 3u61_B 76 MMFVNGSDCKI-----DFVRGPLTNFASAAS---FDGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEA 132 (324)
T ss_dssp EEEEETTTCCH-----HHHHTHHHHHHHBCC---CSSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHH
T ss_pred EEEEcccccCH-----HHHHHHHHHHHhhcc---cCCCCeEEEEECCcccCcHH--------------HHHHHHHHHHh
Confidence 99999876431 111111222111111 11357899999999997 54 78899999983
No 50
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=2.6e-14 Score=159.46 Aligned_cols=200 Identities=20% Similarity=0.238 Sum_probs=119.6
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
.+.+.+.+...|+||+.+|+.|..++.....+ . +.+ .......++||+||||||||++|
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~-------~-------------~~~-~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPK-------V-------------LED-TRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCE-------E-------------TTT-TEECCSCCEEEEESSCCTHHHHH
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcc-------c-------------ccC-CCcCCCcceEEECCCchHHHHHH
Confidence 34567778888999999998876555311000 0 000 11112248999999999999999
Q ss_pred HHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHH
Q 008329 348 KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (570)
Q Consensus 348 raLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~ 427 (570)
+++|+.++..++.... .....++.+..........+......+..+.++|+||||||++.++ +++
T Consensus 345 r~la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~--------------~q~ 409 (595)
T 3f9v_A 345 QFISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE--------------DRV 409 (595)
T ss_dssp HSSSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH--------------HHH
T ss_pred HHHHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh--------------Hhh
Confidence 9999998766544211 1111222222211111111111122334457899999999999876 899
Q ss_pred HHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHH
Q 008329 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (570)
Q Consensus 428 ~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~ 507 (570)
.|+++||+..+++...|. .... ..++.+|+|+|.. .++++....+ .+
T Consensus 410 ~Ll~~le~~~i~i~~~g~-------~~~~-~~~~~vIaatNp~-------~G~~~~~~~~----~~-------------- 456 (595)
T 3f9v_A 410 AIHEAMEQQTVSIAKAGI-------VAKL-NARAAVIAAGNPK-------FGRYISERPV----SD-------------- 456 (595)
T ss_dssp HHHHHHHSSSEEEESSSS-------EEEE-CCCCEEEEEECCT-------TCCSCTTSCS----CT--------------
T ss_pred hhHHHHhCCEEEEecCCc-------EEEe-cCceEEEEEcCCc-------CCccCcccCc----hh--------------
Confidence 999999987776643322 1122 4568899999974 2333321110 00
Q ss_pred HHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHh
Q 008329 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKC 549 (570)
Q Consensus 508 ~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL 549 (570)
...+.+.+++||+.++.+.++..++ ...+
T Consensus 457 ------------ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i 485 (595)
T 3f9v_A 457 ------------NINLPPTILSRFDLIFILKDQPGEQ-DREL 485 (595)
T ss_dssp ------------TTCSCSSSGGGCSCCEEECCTTHHH-HHHH
T ss_pred ------------ccCCCHHHHhhCeEEEEeCCCCCHH-HHHH
Confidence 1137789999998877777777666 4433
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=6.9e-13 Score=135.34 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=88.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE----eeccccc----------------------------ccccccchhhH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI----ADATTLT----------------------------QAGYVGEDVES 378 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~----i~~s~l~----------------------------~~g~vGe~~~~ 378 (570)
+++||+||||||||++|+++++.++..... +++.... ...+.|...
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-- 123 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD-- 123 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech--
Confidence 679999999999999999999988631100 1121110 011122100
Q ss_pred HHHHHhhhc-----chhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCc
Q 008329 379 ILYKLLTVS-----DYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDN 453 (570)
Q Consensus 379 ~lr~lf~~a-----~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~ 453 (570)
+.+.+... ......+.++||||||+|.+.++ +++.|++.|+.....+...+ ..
T Consensus 124 -~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~g-------~~ 181 (350)
T 1g8p_A 124 -IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH--------------IVDLLLDVAQSGENVVERDG-------LS 181 (350)
T ss_dssp -HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH--------------HHHHHHHHHHHSEEEECCTT-------CC
T ss_pred -hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCceEEEecc-------eE
Confidence 01111111 11223346889999999999876 89999999995443332222 11
Q ss_pred eEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCe
Q 008329 454 IQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPV 533 (570)
Q Consensus 454 i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~ 533 (570)
... ..++++|+++|..+ ..+.+.+++||+.
T Consensus 182 ~~~-~~~~~li~~~n~~~-------------------------------------------------~~l~~~L~~R~~~ 211 (350)
T 1g8p_A 182 IRH-PARFVLVGSGNPEE-------------------------------------------------GDLRPQLLDRFGL 211 (350)
T ss_dssp EEE-ECCEEEEEEECSCS-------------------------------------------------CCCCHHHHTTCSE
T ss_pred Eee-CCceEEEEEeCCCC-------------------------------------------------CCCCHHHHhhcce
Confidence 122 34688898888521 0256888889988
Q ss_pred EEecCCCC-HHHHHHHhcc
Q 008329 534 LVSLLALT-ENQLVQKCHF 551 (570)
Q Consensus 534 iv~l~~ls-eedL~~IL~~ 551 (570)
.+.+..++ +++..+|+..
T Consensus 212 ~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 212 SVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp EEECCCCCSHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHH
Confidence 88888884 5444466644
No 52
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.44 E-value=1e-12 Score=135.46 Aligned_cols=62 Identities=24% Similarity=0.379 Sum_probs=46.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.++|++.+++.+..++...... + .++.++||+||||||||++|+++|+.++.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~-------~--------------------~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREG-------K--------------------IAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTT-------C--------------------CTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hccChHHHHHHHHHHHHHHHcC-------C--------------------CCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3799999999877655311110 0 11268999999999999999999999974
Q ss_pred -cEEEeecccc
Q 008329 357 -PFVIADATTL 366 (570)
Q Consensus 357 -~fv~i~~s~l 366 (570)
+++.+++..+
T Consensus 98 ~~~~~~~~~~~ 108 (368)
T 3uk6_A 98 TPFTAIAGSEI 108 (368)
T ss_dssp CCEEEEEGGGG
T ss_pred CCcccccchhh
Confidence 7888877653
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.42 E-value=3.2e-13 Score=138.30 Aligned_cols=149 Identities=21% Similarity=0.331 Sum_probs=95.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+++.+.+.+.... ....++||+||||||||++|+++++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~ 52 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA------------------------------PSDATVLIHGDSGTGKELVARALHACSARS 52 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC------------------------------STTSCEEEESCTTSCHHHHHHHHHHHSSCS
T ss_pred CcEECCHHHHHHHHHHHHHh------------------------------CCCCcEEEECCCCchHHHHHHHHHHhCccc
Confidence 48999999999888875110 113689999999999999999999976
Q ss_pred CCcEEEeeccccccc----ccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHH
Q 008329 355 NVPFVIADATTLTQA----GYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (570)
Q Consensus 355 g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL 430 (570)
+.+|+.++|+.+... .+.|.. ...+..........+..+.+++||||||+.+... +|..|+
T Consensus 53 ~~~~v~v~~~~~~~~l~~~~lfg~~-~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~--------------~q~~Ll 117 (304)
T 1ojl_A 53 DRPLVTLNCAALNESLLESELFGHE-KGAFTGADKRREGRFVEADGGTLFLDEIGDISPL--------------MQVRLL 117 (304)
T ss_dssp SSCCCEEECSSCCHHHHHHHHTCCC-SSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH--------------HHHHHH
T ss_pred CCCeEEEeCCCCChHHHHHHhcCcc-ccccCchhhhhcCHHHhcCCCEEEEeccccCCHH--------------HHHHHH
Confidence 578999999876421 111110 0000000000111223356789999999999876 899999
Q ss_pred HHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccc
Q 008329 431 KMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQD 482 (570)
Q Consensus 431 ~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd 482 (570)
.+|+...+. ..+.. .....++.+|+++|.+ +++.+..++|+
T Consensus 118 ~~l~~~~~~---------~~g~~-~~~~~~~riI~atn~~-l~~~v~~g~fr 158 (304)
T 1ojl_A 118 RAIQEREVQ---------RVGSN-QTISVDVRLIAATHRD-LAEEVSAGRFR 158 (304)
T ss_dssp HHHHSSBCC---------BTTBC-CCCBCCCEEEEEESSC-HHHHHHHTSSC
T ss_pred HHHhcCEee---------ecCCc-ccccCCeEEEEecCcc-HHHHHHhCCcH
Confidence 999954321 01111 1123457889998865 66666655553
No 54
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.41 E-value=1.1e-12 Score=143.58 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=81.8
Q ss_pred hHHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHH
Q 008329 268 PKEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLA 347 (570)
Q Consensus 268 p~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLA 347 (570)
.+.+.+.+.+.|+|++++++.+..++. ...++||+||||||||++|
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~----------------------------------~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAAL----------------------------------SGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHH----------------------------------HTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh----------------------------------cCCeeEeecCchHHHHHHH
Confidence 356778888899999999998877763 1268999999999999999
Q ss_pred HHHHHHhC--CcEEEeecccccccccccch-hhHH-HHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 348 KTLARYVN--VPFVIADATTLTQAGYVGED-VESI-LYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 348 raLA~~lg--~~fv~i~~s~l~~~g~vGe~-~~~~-lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
+++|+.++ .+|..+.+.-.....+.|.. .... -...+..+.... ...++|||||||+++.++
T Consensus 59 raLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~-l~~~~IL~IDEI~r~~~~------------- 124 (500)
T 3nbx_X 59 RRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGY-LPEAEIVFLDEIWKAGPA------------- 124 (500)
T ss_dssp HHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTS-GGGCSEEEEESGGGCCHH-------------
T ss_pred HHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccC-CCcceeeeHHhHhhhcHH-------------
Confidence 99999884 35555554321222233321 0100 011122111100 114679999999998776
Q ss_pred HHHHHHHHHHcCCeeee
Q 008329 424 GVQQALLKMLEGTVVNV 440 (570)
Q Consensus 424 ~vq~~LL~~LEg~~v~i 440 (570)
+++.|+++|++..+.+
T Consensus 125 -~q~~LL~~lee~~v~i 140 (500)
T 3nbx_X 125 -ILNTLLTAINERQFRN 140 (500)
T ss_dssp -HHHHHHHHHHSSEEEC
T ss_pred -HHHHHHHHHHHHhccC
Confidence 8999999999776655
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.41 E-value=2.4e-12 Score=120.50 Aligned_cols=105 Identities=28% Similarity=0.385 Sum_probs=71.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++++++.|...+... ...+++|+||+|||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK--------------------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHcCcHHHHHHHHHHHhCC--------------------------------CCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4799999999998888410 11469999999999999999999876
Q ss_pred --CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHH
Q 008329 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (570)
Q Consensus 355 --g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~ 432 (570)
...++.+++.+..... .....+........ .....+.||+|||+|.+.+. .++.|++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~ 125 (226)
T 2chg_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (226)
T ss_dssp GGGGGEEEEETTCTTCHH----HHHHHHHHHHTSCC--STTCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred ccccceEEeccccccChH----HHHHHHHHHhcccC--CCccCceEEEEeChhhcCHH--------------HHHHHHHH
Confidence 3457777765533110 11111222211110 11246789999999999765 67889999
Q ss_pred Hc
Q 008329 433 LE 434 (570)
Q Consensus 433 LE 434 (570)
++
T Consensus 126 l~ 127 (226)
T 2chg_A 126 ME 127 (226)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 56
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.38 E-value=6.6e-13 Score=121.84 Aligned_cols=117 Identities=26% Similarity=0.311 Sum_probs=75.7
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh--
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-- 354 (570)
+.++|++.+++.+...+.. ....+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--------------------------------~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--------------------------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--------------------------------SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred chhhcchHHHHHHHHHHhC--------------------------------CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3589999999888877631 012689999999999999999999987
Q ss_pred --------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHH
Q 008329 355 --------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGV 425 (570)
Q Consensus 355 --------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~v 425 (570)
+.+++.+++..+.. ..+.+.. ...+.+.+..... ...+.||+|||+|.+...+...... ..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~-----~~~ 140 (187)
T 2p65_A 70 GDVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEVQD---AEGQVVMFIDEIHTVVGAGAVAEGA-----LDA 140 (187)
T ss_dssp TCSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHHHH---TTTSEEEEETTGGGGSSSSSSCTTS-----CCT
T ss_pred cCCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHHHh---cCCceEEEEeCHHHhcccccccccc-----hHH
Confidence 66777777665432 1122322 3334444333221 1356799999999997543211101 126
Q ss_pred HHHHHHHHc
Q 008329 426 QQALLKMLE 434 (570)
Q Consensus 426 q~~LL~~LE 434 (570)
++.|+..++
T Consensus 141 ~~~l~~~~~ 149 (187)
T 2p65_A 141 GNILKPMLA 149 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777878776
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.36 E-value=1.2e-12 Score=141.61 Aligned_cols=148 Identities=23% Similarity=0.260 Sum_probs=93.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|++..++.+...+... ...++||+||||||||++|+++|+.+
T Consensus 181 ~iiGr~~~i~~l~~~l~r~--------------------------------~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR--------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------------------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CccCcHHHHHHHHHHHhcc--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3899999999988887410 12689999999999999999999987
Q ss_pred -------CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHH
Q 008329 355 -------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~ 427 (570)
+.+++.++++ ..|.|+. +..+..++.... ...++||||| ... .+++
T Consensus 229 ~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~~----~~~~~iLfiD----~~~--------------~a~~ 281 (468)
T 3pxg_A 229 EVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEIR----QAGNIILFID----AAI--------------DASN 281 (468)
T ss_dssp CSCTTTSSCCEECC---------------CTTHHHHHHHHH----TCCCCEEEEC----C--------------------
T ss_pred CCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHHH----hcCCeEEEEe----Cch--------------hHHH
Confidence 7778888876 3356653 444556655443 2467899999 111 1667
Q ss_pred HHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHH
Q 008329 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (570)
Q Consensus 428 ~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~ 507 (570)
.|+..|+ ..++++|+++|..+....+
T Consensus 282 ~L~~~L~-----------------------~g~v~vI~at~~~e~~~~~------------------------------- 307 (468)
T 3pxg_A 282 ILKPSLA-----------------------RGELQCIGATTLDEYRKYI------------------------------- 307 (468)
T ss_dssp --CCCTT-----------------------SSSCEEEEECCTTTTHHHH-------------------------------
T ss_pred HHHHhhc-----------------------CCCEEEEecCCHHHHHHHh-------------------------------
Confidence 7777776 2247788888876422111
Q ss_pred HHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 508 ~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.+.+.+.+||. .+.+..++.++..+||....
T Consensus 308 --------------~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 --------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp --------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTT
T ss_pred --------------hcCHHHHHhCc-cceeCCCCHHHHHHHHHHHH
Confidence 14577777775 47777778888777777544
No 58
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.34 E-value=3.6e-13 Score=122.60 Aligned_cols=112 Identities=16% Similarity=0.280 Sum_probs=81.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|++.+++.+.+.+..... ...++||+||||||||++|+++++... +
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~------------------------------~~~~vll~G~~GtGKt~lA~~i~~~~~-~ 53 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK------------------------------RTSPVFLTGEAGSPFETVARYFHKNGT-P 53 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT------------------------------CSSCEEEEEETTCCHHHHHGGGCCTTS-C
T ss_pred CceeCCHHHHHHHHHHHHHhC------------------------------CCCcEEEECCCCccHHHHHHHHHHhCC-C
Confidence 379999999999888752111 126899999999999999999999887 8
Q ss_pred EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCe
Q 008329 358 FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTV 437 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~ 437 (570)
++.++|+++... + ....+.. +.+++|||||+|.+..+ +|+.|+++|+..
T Consensus 54 ~~~~~~~~~~~~-~--------~~~~~~~-------a~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~- 102 (143)
T 3co5_A 54 WVSPARVEYLID-M--------PMELLQK-------AEGGVLYVGDIAQYSRN--------------IQTGITFIIGKA- 102 (143)
T ss_dssp EECCSSTTHHHH-C--------HHHHHHH-------TTTSEEEEEECTTCCHH--------------HHHHHHHHHHHH-
T ss_pred eEEechhhCChH-h--------hhhHHHh-------CCCCeEEEeChHHCCHH--------------HHHHHHHHHHhC-
Confidence 999998876421 1 2233332 35689999999999876 788899999831
Q ss_pred eeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 438 VNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 438 v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
...++++|+++|.+
T Consensus 103 -------------------~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 103 -------------------ERCRVRVIASCSYA 116 (143)
T ss_dssp -------------------TTTTCEEEEEEEEC
T ss_pred -------------------CCCCEEEEEecCCC
Confidence 13457788888754
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.33 E-value=2.2e-11 Score=114.86 Aligned_cols=105 Identities=30% Similarity=0.322 Sum_probs=68.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|++.+++.|...+.... .+..++|+||+|+|||++|+++++.+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~-------------------------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGR-------------------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTC-------------------------------CCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHHHHHHHcCC-------------------------------CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 48999999999988874100 11468899999999999999999887432
Q ss_pred E------------------------EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 F------------------------VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 f------------------------v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
. +.++... ......+++++...........+.+|+|||+|.+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~--- 141 (250)
T 1njg_A 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 141 (250)
T ss_dssp TCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH---
Confidence 1 1111110 0112233444433321112245789999999998765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.++.
T Consensus 142 -----------~~~~l~~~l~~ 152 (250)
T 1njg_A 142 -----------SFNALLKTLEE 152 (250)
T ss_dssp -----------HHHHHHHHHHS
T ss_pred -----------HHHHHHHHHhc
Confidence 78889999983
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=5.6e-12 Score=126.68 Aligned_cols=106 Identities=28% Similarity=0.363 Sum_probs=71.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.++|++++++.|..++... ...++||+||||+|||++|+++++.+..
T Consensus 26 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTG--------------------------------SMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------------------------------CCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred HhhCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 4899999999998887410 0146999999999999999999998632
Q ss_pred ----cEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHH
Q 008329 357 ----PFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (570)
Q Consensus 357 ----~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~ 432 (570)
.++.+++++..... .+...+.+...... .....+.||+|||+|.+.+. .++.|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 133 (327)
T 1iqp_A 74 NWRHNFLELNASDERGIN----VIREKVKEFARTKP--IGGASFKIIFLDEADALTQD--------------AQQALRRT 133 (327)
T ss_dssp GHHHHEEEEETTCHHHHH----TTHHHHHHHHHSCC--GGGCSCEEEEEETGGGSCHH--------------HHHHHHHH
T ss_pred cccCceEEeeccccCchH----HHHHHHHHHHhhCC--cCCCCCeEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 36777765532110 11111222111111 11245789999999999765 78899999
Q ss_pred HcC
Q 008329 433 LEG 435 (570)
Q Consensus 433 LEg 435 (570)
|+.
T Consensus 134 le~ 136 (327)
T 1iqp_A 134 MEM 136 (327)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.7e-12 Score=132.27 Aligned_cols=108 Identities=24% Similarity=0.309 Sum_probs=71.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC--
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN-- 355 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg-- 355 (570)
.++|++++++.|..++... ..+++||+||||||||++|+++++.++
T Consensus 38 ~i~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 85 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSA--------------------------------NLPHMLFYGPPGTGKTSTILALTKELYGP 85 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCT--------------------------------TCCCEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcC--------------------------------CCCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4899999999888877310 114699999999999999999998864
Q ss_pred ----CcEEEeecccccccccccchhhHHHHHHhhhcch--------hHhhhcCeEEEEcchhhhhhhhhhcccCCCCchH
Q 008329 356 ----VPFVIADATTLTQAGYVGEDVESILYKLLTVSDY--------NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGE 423 (570)
Q Consensus 356 ----~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~--------~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e 423 (570)
..++.+++++....+.+.+ .+......... ........||+|||+|.+.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~------------- 148 (353)
T 1sxj_D 86 DLMKSRILELNASDERGISIVRE----KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD------------- 148 (353)
T ss_dssp HHHTTSEEEECSSSCCCHHHHTT----HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------
T ss_pred cccccceEEEccccccchHHHHH----HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------
Confidence 3577788766432211111 11111110000 000124579999999999876
Q ss_pred HHHHHHHHHHcC
Q 008329 424 GVQQALLKMLEG 435 (570)
Q Consensus 424 ~vq~~LL~~LEg 435 (570)
.++.|++.|+.
T Consensus 149 -~~~~Ll~~le~ 159 (353)
T 1sxj_D 149 -AQSALRRTMET 159 (353)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHh
Confidence 78899999983
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.30 E-value=4.4e-12 Score=144.48 Aligned_cols=148 Identities=23% Similarity=0.254 Sum_probs=94.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|++..++.+...+... .+.++||+||||||||++|+++|+.+
T Consensus 181 ~iiG~~~~i~~l~~~l~~~--------------------------------~~~~vLL~G~pGtGKT~la~~la~~l~~~ 228 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR--------------------------------TKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS--------------------------------SSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred CccCchHHHHHHHHHHhCC--------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHhcC
Confidence 3899999999998887410 12689999999999999999999997
Q ss_pred -------CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHH
Q 008329 355 -------NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~ 427 (570)
+.+++.+++ ...|.|+. +..++.++..+.. ..++||||| ... .+++
T Consensus 229 ~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~~~----~~~~iLfiD----~~~--------------~~~~ 281 (758)
T 3pxi_A 229 EVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEIRQ----AGNIILFID----AAI--------------DASN 281 (758)
T ss_dssp CSCTTTSSCCEECC---------------CTTHHHHHHHHHT----CCCCEEEEC----C--------------------
T ss_pred CCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHHHh----cCCEEEEEc----Cch--------------hHHH
Confidence 778887777 24466764 5566777665532 467899999 111 1667
Q ss_pred HHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHHH
Q 008329 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVTS 507 (570)
Q Consensus 428 ~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~~ 507 (570)
.|+..|+ ..++++|+++|..+.....
T Consensus 282 ~L~~~l~-----------------------~~~v~~I~at~~~~~~~~~------------------------------- 307 (758)
T 3pxi_A 282 ILKPSLA-----------------------RGELQCIGATTLDEYRKYI------------------------------- 307 (758)
T ss_dssp --CCCTT-----------------------SSSCEEEEECCTTTTHHHH-------------------------------
T ss_pred HHHHHHh-----------------------cCCEEEEeCCChHHHHHHh-------------------------------
Confidence 7777776 2347788888876532211
Q ss_pred HHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 508 SLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 508 ~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
.+.|.+.+|| ..+.+..++.+++.+|+....
T Consensus 308 --------------~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 308 --------------EKDAALERRF-QPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp --------------TTCSHHHHSE-EEEECCCCCHHHHHHHHHHTT
T ss_pred --------------hccHHHHhhC-cEEEeCCCCHHHHHHHHHHHH
Confidence 1446777777 447777777777777776543
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.30 E-value=4.4e-12 Score=146.56 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=98.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|+++.++.+...+... .+.+++|+||||||||++|+++|+.+
T Consensus 171 ~viGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~pG~GKT~la~~la~~l~~~ 218 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRR--------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKG 218 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCS--------------------------------SCCCCEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHhcC--------------------------------CCCceEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 4899999999888877410 12689999999999999999999987
Q ss_pred -------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHH
Q 008329 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ 426 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq 426 (570)
+.+++.++++.+.. ..+.|+. ...+..++..... ...+.||||||+|.+.+..... ....+.
T Consensus 219 ~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~------g~~~~~ 288 (854)
T 1qvr_A 219 DVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVVQ---SQGEVILFIDELHTVVGAGKAE------GAVDAG 288 (854)
T ss_dssp CSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHHT---TCSSEEEEECCC----------------------
T ss_pred CCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHHh---cCCCeEEEEecHHHHhccCCcc------chHHHH
Confidence 78899999888653 3466654 5566666655431 1256899999999998653321 112367
Q ss_pred HHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhhhhhcCCCChHHHH
Q 008329 427 QALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRANMRAGGVTDAVVT 506 (570)
Q Consensus 427 ~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e~~~~~~~~~~~~~ 506 (570)
+.|..+++. .++.+|++++..+...
T Consensus 289 ~~L~~~l~~-----------------------~~i~~I~at~~~~~~~-------------------------------- 313 (854)
T 1qvr_A 289 NMLKPALAR-----------------------GELRLIGATTLDEYRE-------------------------------- 313 (854)
T ss_dssp ---HHHHHT-----------------------TCCCEEEEECHHHHHH--------------------------------
T ss_pred HHHHHHHhC-----------------------CCeEEEEecCchHHhh--------------------------------
Confidence 778888872 2355677776432110
Q ss_pred HHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhcchh
Q 008329 507 SSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 507 ~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~~~~ 553 (570)
..+.+.+.+||.. +.+.+++.++..+|+....
T Consensus 314 --------------~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 314 --------------IEKDPALERRFQP-VYVDEPTVEETISILRGLK 345 (854)
T ss_dssp --------------HTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHH
T ss_pred --------------hccCHHHHhCCce-EEeCCCCHHHHHHHHHhhh
Confidence 0145788888875 7888889988888886544
No 64
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=1.1e-11 Score=127.60 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=69.0
Q ss_pred ChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh------
Q 008329 281 GQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV------ 354 (570)
Q Consensus 281 Gqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l------ 354 (570)
||+++++.|...+... ..+++||+||||+|||++|+++|+.+
T Consensus 1 g~~~~~~~L~~~i~~~--------------------------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~ 48 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS--------------------------------EGISILINGEDLSYPREVSLELPEYVEKFPPK 48 (305)
T ss_dssp ---CHHHHHHHHHHTC--------------------------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC
T ss_pred ChHHHHHHHHHHHHCC--------------------------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhcc
Confidence 7888899888887410 01578999999999999999999864
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
...+..+++++- .++ ...++++...+..........|++|||+|.+... .+++||+.||
T Consensus 49 ~~d~~~l~~~~~----~~~---id~ir~li~~~~~~p~~~~~kvviIdead~lt~~--------------a~naLLk~LE 107 (305)
T 2gno_A 49 ASDVLEIDPEGE----NIG---IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ--------------AANAFLKALE 107 (305)
T ss_dssp TTTEEEECCSSS----CBC---HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH--------------HHHHTHHHHH
T ss_pred CCCEEEEcCCcC----CCC---HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH--------------HHHHHHHHHh
Confidence 335676665421 122 2234555444432222245689999999999866 7999999999
Q ss_pred C
Q 008329 435 G 435 (570)
Q Consensus 435 g 435 (570)
+
T Consensus 108 e 108 (305)
T 2gno_A 108 E 108 (305)
T ss_dssp S
T ss_pred C
Confidence 4
No 65
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.27 E-value=7.1e-12 Score=125.52 Aligned_cols=106 Identities=27% Similarity=0.369 Sum_probs=71.3
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+++.|...+.. . ...++||+||||||||++|+++++.+
T Consensus 18 ~~~g~~~~~~~l~~~l~~---------~-----------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER---------K-----------------------NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT---------T-----------------------CCCCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHhC---------C-----------------------CCCeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 389999999988776631 0 11469999999999999999999986
Q ss_pred --CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHH
Q 008329 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM 432 (570)
Q Consensus 355 --g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~ 432 (570)
+.+++.+++++..... .....+........ .....+.||+|||+|.+... .++.|++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~ 125 (319)
T 2chq_A 66 NWRDNFIEMNASDERGID----VVRHKIKEFARTAP--IGGAPFKIIFLDEADALTAD--------------AQAALRRT 125 (319)
T ss_dssp CHHHHCEEEETTSTTCTT----TSSHHHHHHHHSCC--SSSCCCEEEEEETGGGSCHH--------------HHHTTGGG
T ss_pred cccCCeEEEeCccccChH----HHHHHHHHHHhcCC--CCCCCceEEEEeCCCcCCHH--------------HHHHHHHH
Confidence 3357778876643211 11122222211111 11145789999999999765 78889988
Q ss_pred HcC
Q 008329 433 LEG 435 (570)
Q Consensus 433 LEg 435 (570)
++.
T Consensus 126 le~ 128 (319)
T 2chq_A 126 MEM 128 (319)
T ss_dssp TSS
T ss_pred HHh
Confidence 883
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.2e-11 Score=127.43 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=49.3
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh--
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-- 354 (570)
+.++|+++.++.|...+...... ..+.+++|+||||||||++|+++++.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----------------------------~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----------------------------EVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----------------------------CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----------------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999888522210 012579999999999999999999987
Q ss_pred ---------CCcEEEeecccc
Q 008329 355 ---------NVPFVIADATTL 366 (570)
Q Consensus 355 ---------g~~fv~i~~s~l 366 (570)
+.+++.+++.+.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 72 VKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp HHHHSSSSTTCEEEEEEHHHH
T ss_pred HhhhhcCCCCceEEEEECccC
Confidence 888999987654
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.25 E-value=4.3e-11 Score=122.86 Aligned_cols=105 Identities=30% Similarity=0.345 Sum_probs=68.9
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|++++++.|..++... + .++.+||+||+|||||++|+++++.+++.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~----------~---------------------~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLG----------R---------------------IHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHT----------C---------------------CCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred hccCcHHHHHHHHHHHHhC----------C---------------------CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3899999999999887410 0 11457899999999999999999988542
Q ss_pred ------------------------EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 358 ------------------------FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 358 ------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
++.+++.. ..+. ..+++++...........+.||+|||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~--- 134 (373)
T 1jr3_A 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTKV---EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--- 134 (373)
T ss_dssp TCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCCS---SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH---
T ss_pred CCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCCH---HHHHHHHHHHhhccccCCeEEEEEECcchhcHH---
Confidence 22222211 0111 112333333221111245689999999999765
Q ss_pred cccCCCCchHHHHHHHHHHHcC
Q 008329 414 LNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg 435 (570)
.++.|++.++.
T Consensus 135 -----------~~~~Ll~~le~ 145 (373)
T 1jr3_A 135 -----------SFNALLKTLEE 145 (373)
T ss_dssp -----------HHHHHHHHHHS
T ss_pred -----------HHHHHHHHHhc
Confidence 78899999984
No 68
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.8e-11 Score=125.50 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=107.5
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.+.|.++..+.|...+...... ..+.+++|+||||||||++++.+++.+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----------------------------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----------------------------SQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----------------------------TCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----------------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4678888888888777532221 123689999999999999999999988
Q ss_pred -------CCcEEEeeccccccc---------ccccc-----hhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhh
Q 008329 355 -------NVPFVIADATTLTQA---------GYVGE-----DVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAES 413 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~~---------g~vGe-----~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~ 413 (570)
...++.++|..+... .+.|+ .....+.+.|..... ....+.||+|||+|.+. .
T Consensus 73 ~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~--- 146 (318)
T 3te6_A 73 SARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S--- 146 (318)
T ss_dssp TTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C---
T ss_pred hhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c---
Confidence 245788998765431 11111 113344555543210 12456899999999997 2
Q ss_pred cccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhcccccccccCchhhh
Q 008329 414 LNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQDSSIGFGAPVRA 493 (570)
Q Consensus 414 ~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrfd~~I~f~~p~~e 493 (570)
..+...|+++.+ ....++.+|+.+|..++.+..
T Consensus 147 ---------q~~L~~l~~~~~---------------------~~~s~~~vI~i~n~~d~~~~~----------------- 179 (318)
T 3te6_A 147 ---------EKILQYFEKWIS---------------------SKNSKLSIICVGGHNVTIREQ----------------- 179 (318)
T ss_dssp ---------THHHHHHHHHHH---------------------CSSCCEEEEEECCSSCCCHHH-----------------
T ss_pred ---------chHHHHHHhccc---------------------ccCCcEEEEEEecCcccchhh-----------------
Confidence 014444554433 124567888888876532111
Q ss_pred hhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccC-eEEecCCCCHHHHHHHhcchh
Q 008329 494 NMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFP-VLVSLLALTENQLVQKCHFPR 553 (570)
Q Consensus 494 ~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~-~iv~l~~lseedL~~IL~~~~ 553 (570)
+.+.+.+|+. ..+.|.+|+.+|+.+||....
T Consensus 180 -----------------------------L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 180 -----------------------------INIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp -----------------------------HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred -----------------------------cchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 1255667776 578999999999999999876
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=1.5e-11 Score=123.47 Aligned_cols=104 Identities=21% Similarity=0.276 Sum_probs=70.7
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++.+++.|...+... ..++++|+||+|+|||++|+++++.+
T Consensus 22 ~~~g~~~~~~~l~~~l~~~--------------------------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDG--------------------------------NMPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSC--------------------------------CCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHCCHHHHHHHHHHHHcC--------------------------------CCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3799999999998887410 11459999999999999999999886
Q ss_pred --CCcEEEeecccccccccccchhhHHHHHHhhhcc---hhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHH
Q 008329 355 --NVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 429 (570)
Q Consensus 355 --g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~---~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~L 429 (570)
+.+++.+++++.. + ...+++.+.... .......+.||+|||+|.+... .++.|
T Consensus 70 ~~~~~~~~~~~~~~~-----~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L 127 (323)
T 1sxj_B 70 SYADGVLELNASDDR-----G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQAL 127 (323)
T ss_dssp GHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTT
T ss_pred cccCCEEEecCcccc-----C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHH
Confidence 3357777766532 1 112222222110 0000234789999999999765 68889
Q ss_pred HHHHcC
Q 008329 430 LKMLEG 435 (570)
Q Consensus 430 L~~LEg 435 (570)
++.++.
T Consensus 128 ~~~le~ 133 (323)
T 1sxj_B 128 RRTMEL 133 (323)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999983
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=3.2e-11 Score=124.09 Aligned_cols=104 Identities=23% Similarity=0.293 Sum_probs=69.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV- 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~- 356 (570)
.++||+.+++.|...+... ...+++|+||||||||++|+++|+.+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g--------------------------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG--------------------------------KLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT--------------------------------CCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HhcCcHHHHHHHHHHHhcC--------------------------------CCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3799999999998887410 0135899999999999999999998743
Q ss_pred ----cEEEeecccccccccccchhhHHHHHHhhhcc--hhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHH
Q 008329 357 ----PFVIADATTLTQAGYVGEDVESILYKLLTVSD--YNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (570)
Q Consensus 357 ----~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~--~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL 430 (570)
.+..+++++.. |. ..+++.+.... .........|++|||+|.+... .+++|+
T Consensus 74 ~~~~~~~~~~~~~~~-----~~---~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~ 131 (340)
T 1sxj_C 74 NYSNMVLELNASDDR-----GI---DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQNALR 131 (340)
T ss_dssp SHHHHEEEECTTSCC-----SH---HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHHHHH
T ss_pred CccceEEEEcCcccc-----cH---HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHHHHH
Confidence 25566655421 11 11222211100 0001124689999999999765 789999
Q ss_pred HHHcC
Q 008329 431 KMLEG 435 (570)
Q Consensus 431 ~~LEg 435 (570)
+.||.
T Consensus 132 ~~le~ 136 (340)
T 1sxj_C 132 RVIER 136 (340)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99983
No 71
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=4.4e-11 Score=130.81 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=79.1
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|+|++.+++.|..++...........+.. +..+ .....++||+||||||||++|+++|+.++.+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~---g~~~------------~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHA---GKDG------------SGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCC---CTTS------------TTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhcccc---CccC------------CCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 389999999999999864332211111100 0000 0123689999999999999999999999999
Q ss_pred EEEeecccccccccccch-hhH-----HHHHHhhhcch-hHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHH
Q 008329 358 FVIADATTLTQAGYVGED-VES-----ILYKLLTVSDY-NVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALL 430 (570)
Q Consensus 358 fv~i~~s~l~~~g~vGe~-~~~-----~lr~lf~~a~~-~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL 430 (570)
++.+++++.... .+.+. +.. .+...|..+.. ......+.||||||+|.+..... +..+.|+
T Consensus 105 ~i~in~s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~ 172 (516)
T 1sxj_A 105 ILEQNASDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLA 172 (516)
T ss_dssp EEEECTTSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHH
T ss_pred EEEEeCCCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHH
Confidence 999999886532 11111 000 01111111100 00124678999999999976411 1467788
Q ss_pred HHHc
Q 008329 431 KMLE 434 (570)
Q Consensus 431 ~~LE 434 (570)
++++
T Consensus 173 ~~l~ 176 (516)
T 1sxj_A 173 QFCR 176 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8887
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.23 E-value=9.5e-12 Score=141.43 Aligned_cols=96 Identities=28% Similarity=0.398 Sum_probs=70.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.|+|++..++.+...+... .+.++||+||||||||++|+++++.+
T Consensus 187 ~~iGr~~~i~~l~~~l~~~--------------------------------~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR--------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS--------------------------------SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CccCCHHHHHHHHHHHhcc--------------------------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 4899999999988877310 13689999999999999999999887
Q ss_pred -------CCcEEEeecccccc-cccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 355 -------NVPFVIADATTLTQ-AGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~-~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
+..++.++...+.. ..+.|+. +..++.++..... ..++||||||+|.+.+.
T Consensus 235 ~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~ 293 (758)
T 1r6b_X 235 DVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLEQ----DTNSILFIDEIHTIIGA 293 (758)
T ss_dssp CSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHHSS----SSCEEEEETTTTTTTTS
T ss_pred CCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHHHh----cCCeEEEEechHHHhhc
Confidence 56677777776553 3466654 6666776655432 35799999999999764
No 73
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=2e-11 Score=125.07 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=66.0
Q ss_pred cccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh--
Q 008329 277 KFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV-- 354 (570)
Q Consensus 277 ~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l-- 354 (570)
+.++|++..++.|...+..... .....+++|+||||||||++|+++++.+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~----------------------------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR----------------------------GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS----------------------------SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc----------------------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3589999999998887731100 0123689999999999999999999888
Q ss_pred -------CCcEEEeecccccccc---------------cccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 355 -------NVPFVIADATTLTQAG---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 355 -------g~~fv~i~~s~l~~~g---------------~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
+.+++.+++....... ..|......+..++.... ....+.||+|||+|.+...
T Consensus 71 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 71 RASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp HHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHS
T ss_pred HHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhccc
Confidence 7788889987643210 011111111222221111 1124679999999999754
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.21 E-value=7.9e-11 Score=121.18 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=72.0
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCC--cEEEECCCCCchHHHHHHHHHHh-
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKS--NILLMGPTGSGKTLLAKTLARYV- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~--~vLL~GPPGTGKTtLAraLA~~l- 354 (570)
.++|++..++.|...+...... . .+. .++|+||||||||++++++++.+
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~-------~---------------------~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRN-------P---------------------GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHS-------T---------------------TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHcC-------C---------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4899999999999888532220 0 113 68999999999999999999988
Q ss_pred ---CCcEEEeeccccccc-cc--------------ccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhccc
Q 008329 355 ---NVPFVIADATTLTQA-GY--------------VGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (570)
Q Consensus 355 ---g~~fv~i~~s~l~~~-g~--------------vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~ 416 (570)
+.+++.+++...... .. .+......+..+.... .....+.||+|||++.+...
T Consensus 70 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~------ 140 (389)
T 1fnn_A 70 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD------ 140 (389)
T ss_dssp TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH------
T ss_pred hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH------
Confidence 567888887654310 00 0111011111110000 01134679999999999543
Q ss_pred CCCCchHHHHHHHHHHHc
Q 008329 417 SRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 417 ~~~~~~e~vq~~LL~~LE 434 (570)
++..|+.+++
T Consensus 141 --------~~~~L~~~~~ 150 (389)
T 1fnn_A 141 --------ILSTFIRLGQ 150 (389)
T ss_dssp --------HHHHHHHHTT
T ss_pred --------HHHHHHHHHH
Confidence 7888999887
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.21 E-value=2.1e-10 Score=118.47 Aligned_cols=86 Identities=19% Similarity=0.282 Sum_probs=57.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc------------------------EEEeecccccccccccchhhHHHHHHhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP------------------------FVIADATTLTQAGYVGEDVESILYKLLTV 386 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~------------------------fv~i~~s~l~~~g~vGe~~~~~lr~lf~~ 386 (570)
+.+||+||+|+|||++|+++|+.+.+. +..+++.+- ...++ .+.++++...
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~~---i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTLG---VDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSBC---HHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCCC---HHHHHHHHHH
Confidence 458999999999999999999988543 233332100 01111 2234555444
Q ss_pred cchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 387 SDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 387 a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
...........|++|||+|.+... .+++|++.||+
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEe 134 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLEE 134 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTS
T ss_pred HhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcC
Confidence 332222345789999999999865 78999999994
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.20 E-value=2.6e-10 Score=117.66 Aligned_cols=105 Identities=33% Similarity=0.512 Sum_probs=71.5
Q ss_pred hhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 275 LDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 275 L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+++ ++|++.+++.|...+.....+ . ....+++|+||||+||||||+++|+.+
T Consensus 24 l~~-~~g~~~~~~~l~~~i~~~~~~-------~--------------------~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDE-FIGQENVKKKLSLALEAAKMR-------G--------------------EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGG-CCSCHHHHHHHHHHHHHHHHH-------T--------------------CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHH-ccCcHHHHHHHHHHHHHHHhc-------C--------------------CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344 689999999888877522110 0 012579999999999999999999999
Q ss_pred CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 355 NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 355 g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+.++...++..+.. +.+ +...+... ....|+||||++.+.+. +++.|+..|+
T Consensus 76 ~~~~~~~sg~~~~~----~~~----l~~~~~~~------~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~ 127 (334)
T 1in4_A 76 QTNIHVTSGPVLVK----QGD----MAAILTSL------ERGDVLFIDEIHRLNKA--------------VEELLYSAIE 127 (334)
T ss_dssp TCCEEEEETTTCCS----HHH----HHHHHHHC------CTTCEEEEETGGGCCHH--------------HHHHHHHHHH
T ss_pred CCCEEEEechHhcC----HHH----HHHHHHHc------cCCCEEEEcchhhcCHH--------------HHHHHHHHHH
Confidence 98877665543321 111 22222211 24579999999999764 6777888887
Q ss_pred C
Q 008329 435 G 435 (570)
Q Consensus 435 g 435 (570)
.
T Consensus 128 ~ 128 (334)
T 1in4_A 128 D 128 (334)
T ss_dssp T
T ss_pred h
Confidence 4
No 77
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.19 E-value=5.9e-11 Score=121.02 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=56.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++|+||||||||++|+++++.+ +.+++.+++.++.. .+++.. .......+.. ....+.||||||++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHL-KKGTINEFRN-----MYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHH-HHTCHHHHHH-----HHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHH-HcCcHHHHHH-----HhcCCCEEEEcCcccc
Confidence 589999999999999999999988 88999998876542 122111 0000011111 1134789999999999
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..++. .++.|+..++
T Consensus 111 ~~~~~------------~~~~l~~~l~ 125 (324)
T 1l8q_A 111 SGKER------------TQIEFFHIFN 125 (324)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCChH------------HHHHHHHHHH
Confidence 75321 5666777765
No 78
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=1.7e-10 Score=118.16 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=34.9
Q ss_pred ccCChHHHHHHHHHHH-HhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 278 FVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV-~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.++||+++++.|..++ .. ....+++|+||+|+||||+++++++.+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~--------------------------------~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQP--------------------------------RDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCT--------------------------------TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HhcCCHHHHHHHHHHHhhC--------------------------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999998877655 20 011358999999999999999999954
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.10 E-value=1.7e-10 Score=121.25 Aligned_cols=122 Identities=24% Similarity=0.382 Sum_probs=84.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc--EEEeecccccccccccchhhHHHHHHhh-------h----cchhHhhhcCe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLT-------V----SDYNVAAAQQG 397 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l~~~g~vGe~~~~~lr~lf~-------~----a~~~v~~~~~g 397 (570)
.+++++|++||||+++|+++....+.. |+.++|+.+.+. -...++|. . ....+..+.++
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~--------~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g 224 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQE--------LAESELFGHEKGAFTGALTRKKGKLELADQG 224 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTT--------THHHHHHEECSCSSSSCCCCEECHHHHTTTS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChH--------HHHHHhcCccccccCCcccccCChHhhcCCC
Confidence 579999999999999999999887543 999999986531 11112221 1 11234456789
Q ss_pred EEEEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHH
Q 008329 398 IVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTIS 477 (570)
Q Consensus 398 ILfIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~ 477 (570)
+||||||+.+.+. +|..||++|+...+.- .+.... ...++++|++||. ++.+.+.
T Consensus 225 tlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~-------~g~~~~---~~~~~rii~at~~-~l~~~v~ 279 (368)
T 3dzd_A 225 TLFLDEVGELDQR--------------VQAKLLRVLETGSFTR-------LGGNQK---IEVDIRVISATNK-NLEEEIK 279 (368)
T ss_dssp EEEEETGGGSCHH--------------HHHHHHHHHHHSEECC-------BTCCCB---EECCCEEEEEESS-CHHHHHH
T ss_pred eEEecChhhCCHH--------------HHHHHHHHHHhCCccc-------CCCCcc---eeeeeEEEEecCC-CHHHHHH
Confidence 9999999999987 9999999998543210 111111 1335889999885 5777777
Q ss_pred hccccccc
Q 008329 478 ERRQDSSI 485 (570)
Q Consensus 478 ~Rrfd~~I 485 (570)
.++|...+
T Consensus 280 ~g~fr~dL 287 (368)
T 3dzd_A 280 KGNFREDL 287 (368)
T ss_dssp TTSSCHHH
T ss_pred cCCccHHH
Confidence 77665533
No 80
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.09 E-value=1.7e-10 Score=125.17 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=92.8
Q ss_pred HHHHHhhhcccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHH
Q 008329 269 KEICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAK 348 (570)
Q Consensus 269 ~el~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAr 348 (570)
+.+.+.+.. |+||+.+|+.|.-++.....+ ....-|+||.|+||| ||++|+
T Consensus 206 ~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------------------------~rgdihVLL~G~PGt-KS~Lar 256 (506)
T 3f8t_A 206 TTFARAIAP-LPGAEEVGKMLALQLFSCVGK---------------------------NSERLHVLLAGYPVV-CSEILH 256 (506)
T ss_dssp HHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------------------------GGGCCCEEEESCHHH-HHHHHH
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------------------------cCCceeEEEECCCCh-HHHHHH
Confidence 457778888 999999999888877411100 011248999999999 999999
Q ss_pred HH-HHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhcccCCCCchHHHHH
Q 008329 349 TL-ARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQ 427 (570)
Q Consensus 349 aL-A~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~~~~~~~e~vq~ 427 (570)
++ ++.+....+. ....-...++.+. .... .. +......+..+.++|+|||||+++.++ +|.
T Consensus 257 ~i~~~i~pR~~ft-~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~--------------~qs 318 (506)
T 3f8t_A 257 HVLDHLAPRGVYV-DLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP--------------HRW 318 (506)
T ss_dssp HHHHHTCSSEEEE-EGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH--------------HHH
T ss_pred HHHHHhCCCeEEe-cCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH--------------HHH
Confidence 99 8876543332 1110000111111 0000 11 222223344567899999999999887 999
Q ss_pred HHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 428 ALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 428 ~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
+|++.||+.++++. |. .+ ..++.+|+|+|..
T Consensus 319 aLlEaMEe~~VtI~--G~---------~l-parf~VIAA~NP~ 349 (506)
T 3f8t_A 319 ALMEAMDKGTVTVD--GI---------AL-NARCAVLAAINPG 349 (506)
T ss_dssp HHHHHHHHSEEEET--TE---------EE-ECCCEEEEEECCC
T ss_pred HHHHHHhCCcEEEC--CE---------Ec-CCCeEEEEEeCcc
Confidence 99999998888873 21 23 3458889999975
No 81
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=3.1e-10 Score=115.95 Aligned_cols=116 Identities=19% Similarity=0.303 Sum_probs=72.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh---
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV--- 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l--- 354 (570)
.++|++..++.|...+..... ......++|+||+|||||++++++++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~----------------------------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYR----------------------------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGG----------------------------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHc----------------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 489999999988877631111 0113578999999999999999999988
Q ss_pred ---CCcEEEeecccccccc---------------cccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhhhhhccc
Q 008329 355 ---NVPFVIADATTLTQAG---------------YVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKKAESLNI 416 (570)
Q Consensus 355 ---g~~fv~i~~s~l~~~g---------------~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~r~~~~~ 416 (570)
+.+++.+++....... ..+.+....+..++.... ....+.||+|||++.+.....
T Consensus 73 ~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDE~~~l~~~~~---- 145 (386)
T 2qby_A 73 FLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DYGSQVVIVLDEIDAFVKKYN---- 145 (386)
T ss_dssp TCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TCCSCEEEEEETHHHHHHSSC----
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEcChhhhhccCc----
Confidence 7888888876432100 011111121222221111 112378999999999975411
Q ss_pred CCCCchHHHHHHHHHHHc
Q 008329 417 SRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 417 ~~~~~~e~vq~~LL~~LE 434 (570)
..++..|++.++
T Consensus 146 ------~~~l~~l~~~~~ 157 (386)
T 2qby_A 146 ------DDILYKLSRINS 157 (386)
T ss_dssp ------STHHHHHHHHHH
T ss_pred ------CHHHHHHhhchh
Confidence 116777888876
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.06 E-value=3.8e-10 Score=125.74 Aligned_cols=45 Identities=38% Similarity=0.657 Sum_probs=38.6
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
.++||+.+++.+...+. ...+++|+|||||||||+|++|++.+..
T Consensus 42 ~i~G~~~~l~~l~~~i~----------------------------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAAN----------------------------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HCCSCHHHHHHHHHHHH----------------------------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred eEECchhhHhhcccccc----------------------------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 47999999999888874 1258999999999999999999998853
No 83
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.05 E-value=2.5e-10 Score=109.09 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=53.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
.+++|+||||||||++|+++++.+ +.+++.+++.++... . .. .+.. ...+.+|+|||++.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~--~----~~----~~~~------~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI--S----TA----LLEG------LEQFDLICIDDVDAV 116 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS--C----GG----GGTT------GGGSSEEEEETGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--H----HH----HHHh------ccCCCEEEEeccccc
Confidence 689999999999999999999887 367777887665421 1 11 1111 135689999999998
Q ss_pred hhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 408 TKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 408 ~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
..... .++.|+.+++
T Consensus 117 ~~~~~------------~~~~l~~~l~ 131 (242)
T 3bos_A 117 AGHPL------------WEEAIFDLYN 131 (242)
T ss_dssp TTCHH------------HHHHHHHHHH
T ss_pred cCCHH------------HHHHHHHHHH
Confidence 75421 3666777776
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.02 E-value=1.1e-09 Score=117.66 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=55.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhh-cCeEEEEcch
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAA-QQGIVYIDEV 404 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~-~~gILfIDEI 404 (570)
.+++|+||||||||+||+++++.+ +.+++.+++.++.. .++..- .......+.. ... .+.||||||+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~~vL~IDEi 203 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-DLVDSM-KEGKLNEFRE-----KYRKKVDILLIDDV 203 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-HHHHHH-HTTCHHHHHH-----HHTTTCSEEEEECG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHH-HcccHHHHHH-----HhcCCCCEEEEeCc
Confidence 689999999999999999999988 77888888766431 111110 0000000100 112 5789999999
Q ss_pred hhhhhhhhhcccCCCCchHHHHHHHHHHHc
Q 008329 405 DKITKKAESLNISRDVSGEGVQQALLKMLE 434 (570)
Q Consensus 405 D~L~~~r~~~~~~~~~~~e~vq~~LL~~LE 434 (570)
+.+...+ ..++.|+..++
T Consensus 204 ~~l~~~~------------~~q~~l~~~l~ 221 (440)
T 2z4s_A 204 QFLIGKT------------GVQTELFHTFN 221 (440)
T ss_dssp GGGSSCH------------HHHHHHHHHHH
T ss_pred ccccCCh------------HHHHHHHHHHH
Confidence 9997631 15777777776
No 85
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.00 E-value=6.8e-10 Score=117.32 Aligned_cols=127 Identities=17% Similarity=0.319 Sum_probs=87.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc----ccccchhhHHHHHHhhhc----chhHhhhcCeEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA----GYVGEDVESILYKLLTVS----DYNVAAAQQGIV 399 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~----g~vGe~~~~~lr~lf~~a----~~~v~~~~~gIL 399 (570)
.+++++|++||||+++|+++.... +.+|+.++|+.+.+. ...|.. ...|..+ ...+..+.+|+|
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~-----~g~~tga~~~~~g~~~~a~~gtl 235 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE-----KGAFTGAVSSKEGFFELADGGTL 235 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC-----TTSSTTCCSCBCCHHHHTTTSEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCC-----CCCCCCcccccCCceeeCCCcEE
Confidence 578999999999999999999886 468999999886531 111111 0011111 123345678999
Q ss_pred EEcchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhc
Q 008329 400 YIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 479 (570)
Q Consensus 400 fIDEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~R 479 (570)
|||||+.+... +|..|++.|+...+.- .+... ....++++|++||. ++++.+..+
T Consensus 236 fldei~~l~~~--------------~q~~Ll~~l~~~~~~~-------~g~~~---~~~~~~rii~at~~-~l~~~~~~g 290 (387)
T 1ny5_A 236 FLDEIGELSLE--------------AQAKLLRVIESGKFYR-------LGGRK---EIEVNVRILAATNR-NIKELVKEG 290 (387)
T ss_dssp EEESGGGCCHH--------------HHHHHHHHHHHSEECC-------BTCCS---BEECCCEEEEEESS-CHHHHHHTT
T ss_pred EEcChhhCCHH--------------HHHHHHHHHhcCcEEe-------CCCCc---eeeccEEEEEeCCC-CHHHHHHcC
Confidence 99999999887 9999999998543210 11111 12345889999886 488888888
Q ss_pred cccccccc
Q 008329 480 RQDSSIGF 487 (570)
Q Consensus 480 rfd~~I~f 487 (570)
+|...+.|
T Consensus 291 ~fr~dl~~ 298 (387)
T 1ny5_A 291 KFREDLYY 298 (387)
T ss_dssp SSCHHHHH
T ss_pred CccHHHHH
Confidence 88765544
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.75 E-value=1.8e-08 Score=93.77 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=41.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh----CCcEEEeecccccccccccchhhHHHHHHhhhc---chhHhhhcCeEEEEcc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV----NVPFVIADATTLTQAGYVGEDVESILYKLLTVS---DYNVAAAQQGIVYIDE 403 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l----g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a---~~~v~~~~~gILfIDE 403 (570)
..++|+||||||||+|++++++.+ +..++.++..++.. .+...+... ........+.+|+|||
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeC
Confidence 578899999999999999999887 44555555444321 111111110 0011123678999999
Q ss_pred hhhh
Q 008329 404 VDKI 407 (570)
Q Consensus 404 ID~L 407 (570)
++..
T Consensus 109 ~~~~ 112 (180)
T 3ec2_A 109 LGSE 112 (180)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9854
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.66 E-value=1.1e-07 Score=98.66 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=43.5
Q ss_pred ccCChHHHHHHHHHHH-HhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEE--ECCCCCchHHHHHHHHHHh
Q 008329 278 FVIGQERAKKVLSVAV-YNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILL--MGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV-~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL--~GPPGTGKTtLAraLA~~l 354 (570)
.++|.++.++.|...+ ..... . ....+..+++ +||+|+|||++++.+++.+
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~----~----------------------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLS----G----------------------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHT----S----------------------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhHHHhc----C----------------------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4899999999888877 42111 0 0001256788 9999999999999999876
Q ss_pred ---------CCcEEEeeccc
Q 008329 355 ---------NVPFVIADATT 365 (570)
Q Consensus 355 ---------g~~fv~i~~s~ 365 (570)
+..++.+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 77 SEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp HHHHHHTTCCEEEEEEEGGG
T ss_pred HHHHhccCCceeEEEEECCC
Confidence 34567777643
No 88
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.55 E-value=1.6e-07 Score=119.36 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=70.0
Q ss_pred CCcEEEECCCCCchHHHH-HHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcc---h---hH-hhhcCeEEEE
Q 008329 330 KSNILLMGPTGSGKTLLA-KTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD---Y---NV-AAAQQGIVYI 401 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLA-raLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~---~---~v-~~~~~gILfI 401 (570)
..++||+||||||||++| +++++..+..++.++++..+.+. .+.+.+...+.... . .. ...++.||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~----~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE----HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHH----HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHH----HHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 368999999999999999 55555556778888887755321 11222222221111 0 00 0235679999
Q ss_pred cchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCC
Q 008329 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFV 470 (570)
Q Consensus 402 DEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~ 470 (570)
||++....++- ....+.+.|.++||...+.. ..... .+...++.+|+|+|.+
T Consensus 1343 DEinmp~~d~y--------g~q~~lelLRq~le~gg~yd-------~~~~~--~~~~~~i~lIaA~Npp 1394 (2695)
T 4akg_A 1343 DEINLPKLDKY--------GSQNVVLFLRQLMEKQGFWK-------TPENK--WVTIERIHIVGACNPP 1394 (2695)
T ss_dssp ETTTCSCCCSS--------SCCHHHHHHHHHHHTSSEEC-------TTTCC--EEEEESEEEEEEECCT
T ss_pred ccccccccccc--------CchhHHHHHHHHHhcCCEEE-------cCCCc--EEEecCEEEEEecCCC
Confidence 99997443311 11237788888888322211 11111 2233679999999976
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.43 E-value=1.4e-07 Score=89.11 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=30.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
.+++|+||||||||++|+++++.+ +.+++.+++.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 689999999999999999999887 567777777654
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.43 E-value=2.3e-07 Score=85.31 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=44.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKI 407 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L 407 (570)
..++|+||+|+|||+|++++++.+ +...+.+++.++... .+ ...+.+|+|||++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------~~--------~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------DA--------AFEAEYLAVDQVEKL 95 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------GG--------GGGCSEEEEESTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------HH--------HhCCCEEEEeCcccc
Confidence 567799999999999999999987 656777777665421 00 134679999999987
Q ss_pred hhh
Q 008329 408 TKK 410 (570)
Q Consensus 408 ~~~ 410 (570)
...
T Consensus 96 ~~~ 98 (149)
T 2kjq_A 96 GNE 98 (149)
T ss_dssp CSH
T ss_pred ChH
Confidence 654
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.40 E-value=2e-06 Score=86.54 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=41.2
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|.++..+.|..++.. .+.++++||+|+|||++++.+++..+
T Consensus 13 ~~~gR~~el~~L~~~l~~----------------------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~-- 56 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN----------------------------------YPLTLLLGIRRVGKSSLLRAFLNERP-- 56 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH----------------------------------CSEEEEECCTTSSHHHHHHHHHHHSS--
T ss_pred hcCChHHHHHHHHHHHhc----------------------------------CCeEEEECCCcCCHHHHHHHHHHHcC--
Confidence 379999999999887741 14688999999999999999998875
Q ss_pred EEEeeccc
Q 008329 358 FVIADATT 365 (570)
Q Consensus 358 fv~i~~s~ 365 (570)
.+.+++..
T Consensus 57 ~~~~~~~~ 64 (350)
T 2qen_A 57 GILIDCRE 64 (350)
T ss_dssp EEEEEHHH
T ss_pred cEEEEeec
Confidence 55566543
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.39 E-value=7.9e-07 Score=109.02 Aligned_cols=153 Identities=17% Similarity=0.151 Sum_probs=87.0
Q ss_pred HHHhhhcccCChHHHHHHHHHHHHhhhhhhhhh---------hhc---ccccCCCCCCCCCCCCCCc-ccccCC--cEEE
Q 008329 271 ICKGLDKFVIGQERAKKVLSVAVYNHYMRIYNE---------SSQ---KRSAGESSSCTTDGVDDDT-VELEKS--NILL 335 (570)
Q Consensus 271 l~~~L~~~ViGqd~ak~~L~~aV~~~~~r~~~~---------~~~---~~~~~~~~~~~~~~ld~is-~~i~~~--~vLL 335 (570)
....|++ |-|.+++|+.+.+++....+.-+.. .+. +.+.|.. .||.+. ..-.+. .+|+
T Consensus 1015 ~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~------glD~~lg~GG~p~g~~~l~ 1087 (1706)
T 3cmw_A 1015 SGSSTGS-MSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSL------SLDIALGAGGLPMGRIVEI 1087 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCH------HHHHHTSSSSEETTSEEEE
T ss_pred CCceeee-cCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCch------hHHHHhccCCCCCCCEEEE
Confidence 3344454 7999999999999987665431111 000 0001100 011111 111223 4889
Q ss_pred ECCCCCchHHHHHHHHHHh---CCcEEEeecccccc-----------cccccc----hhhHHHHHHhhhcchhHhhhcCe
Q 008329 336 MGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ-----------AGYVGE----DVESILYKLLTVSDYNVAAAQQG 397 (570)
Q Consensus 336 ~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~-----------~g~vGe----~~~~~lr~lf~~a~~~v~~~~~g 397 (570)
+||||||||++|++++.+. +.+-+.++..+..+ ..|+++ + ++.++.++..++ ...++
T Consensus 1088 ~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~-e~~l~~~~~~ar----~~~~~ 1162 (1706)
T 3cmw_A 1088 YGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG-EQALEICDALAR----SGAVD 1162 (1706)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHHHHHH----HTCCS
T ss_pred EcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccch-HHHHHHHHHHHH----hcCCe
Confidence 9999999999999998765 45655566554221 346666 4 566777766543 35789
Q ss_pred EEEEcchhhhhhhhhhcccCCC---CchHHHHHHHHHHHcC
Q 008329 398 IVYIDEVDKITKKAESLNISRD---VSGEGVQQALLKMLEG 435 (570)
Q Consensus 398 ILfIDEID~L~~~r~~~~~~~~---~~~e~vq~~LL~~LEg 435 (570)
+||+||+|++.+.++..+...+ --.+++.+++|..|++
T Consensus 1163 ~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1163 VIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp EEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 9999999999998653221111 1234567778888875
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.28 E-value=6.4e-06 Score=82.94 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=41.8
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.++|.++..+.|.. +. . +.++++||+|+|||+|++.+++.+...
T Consensus 14 ~~~gR~~el~~L~~-l~----------------------------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LR----------------------------------A-PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp GSCCCHHHHHHHHH-TC----------------------------------S-SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred HhcChHHHHHHHHH-hc----------------------------------C-CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 37899988888877 62 0 368899999999999999999988766
Q ss_pred EEEeeccc
Q 008329 358 FVIADATT 365 (570)
Q Consensus 358 fv~i~~s~ 365 (570)
.+.+++..
T Consensus 58 ~~~~~~~~ 65 (357)
T 2fna_A 58 YIYLDLRK 65 (357)
T ss_dssp EEEEEGGG
T ss_pred EEEEEchh
Confidence 77777654
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.13 E-value=1.5e-05 Score=101.59 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=52.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
.++++.||+|||||++++++|+.+|.+++.++|++-... ..+...|..+ ...++++++||++++.++
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence 468899999999999999999999999999999885432 2223333332 235689999999999876
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.11 E-value=6.7e-07 Score=91.65 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=29.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC----CcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg----~~fv~i~~s~l 366 (570)
.+++|+||||||||+||+++|..+. .+++.+++.++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 6899999999999999999998654 66776776554
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.07 E-value=1.7e-05 Score=80.40 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=22.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.+++|+||||||||++|++||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5799999999999999999999764
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.07 E-value=4.1e-06 Score=82.07 Aligned_cols=77 Identities=12% Similarity=0.292 Sum_probs=49.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
.++||+||||||||++|.++|+.+...++....+. . .-+ +.. .....|++|||+|...-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~-s-~f~------------l~~------l~~~kIiiLDEad~~~~- 117 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST-S-HFW------------LEP------LTDTKVAMLDDATTTCW- 117 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS-S-CGG------------GGG------GTTCSSEEEEEECHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc-c-hhh------------hcc------cCCCCEEEEECCCchhH-
Confidence 46899999999999999999999865433211100 0 000 000 01234899999985421
Q ss_pred hhhcccCCCCchHHHHHHHHHHHcCCeeee
Q 008329 411 AESLNISRDVSGEGVQQALLKMLEGTVVNV 440 (570)
Q Consensus 411 r~~~~~~~~~~~e~vq~~LL~~LEg~~v~i 440 (570)
+.+...+..+|||..+.+
T Consensus 118 ------------~~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 118 ------------TYFDTYMRNALDGNPISI 135 (212)
T ss_dssp ------------HHHHHHCHHHHHTCCEEE
T ss_pred ------------HHHHHHHHHHhCCCcccH
Confidence 225667888999876655
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.92 E-value=6.5e-06 Score=85.66 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=41.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCc--EEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVP--FVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITK 409 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~ 409 (570)
.++|+||||||||++|..+|...+.+ |+.....+... .+. .+.+..+..+..... ..+ +|+|||++.+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l~-----~~~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAML-----QHR-VIVIDSLKNVIG 196 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHHH-----HCS-EEEEECCTTTC-
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHHh-----hCC-EEEEeccccccc
Confidence 45799999999999999999765433 55542222211 111 222333333322211 233 999999999976
Q ss_pred hh
Q 008329 410 KA 411 (570)
Q Consensus 410 ~r 411 (570)
..
T Consensus 197 ~~ 198 (331)
T 2vhj_A 197 AA 198 (331)
T ss_dssp --
T ss_pred cc
Confidence 53
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.90 E-value=2.1e-05 Score=101.15 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=89.6
Q ss_pred CcEEEECCCCCchHHHHHH-HHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcc----hh-Hh---hhcCeEEEE
Q 008329 331 SNILLMGPTGSGKTLLAKT-LARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSD----YN-VA---AAQQGIVYI 401 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAra-LA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~----~~-v~---~~~~gILfI 401 (570)
.++||+||||||||.+++. +++..+.+++.+++++-+.+. .+...+........ .. .. ..+..|+||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~----~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPE----LLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHH----HHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHH----HHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 6899999999999977654 444446677888887755321 11111211111110 10 11 134579999
Q ss_pred cchhhhhhhhhhcccCCCCchHHHHHHHHHHHcCCeeeecCCCccccCCCCceEeecCCeEEEecCCCCChHHHHHhccc
Q 008329 402 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISERRQ 481 (570)
Q Consensus 402 DEID~L~~~r~~~~~~~~~~~e~vq~~LL~~LEg~~v~ipe~g~~~~~~~~~i~idtsnvi~I~agn~~dLe~~l~~Rrf 481 (570)
||++....+. .....+...|.++||......++ . ...+...++.+|+|.|.+.- .+
T Consensus 1381 DDiNmp~~D~--------yGtQ~~ielLrqlld~~g~yd~~--------~-~~~~~i~d~~~vaamnPp~~-----gG-- 1436 (3245)
T 3vkg_A 1381 DEINLPSTDK--------YGTQRVITFIRQMVEKGGFWRTS--------D-HTWIKLDKIQFVGACNPPTD-----AG-- 1436 (3245)
T ss_dssp TTTTCCCCCT--------TSCCHHHHHHHHHHHHSEEEETT--------T-TEEEEESSEEEEEEECCTTS-----TT--
T ss_pred cccCCCCccc--------cccccHHHHHHHHHHcCCeEECC--------C-CeEEEecCeEEEEEcCCCCC-----CC--
Confidence 9998754321 11123788899999843332221 1 12234578999999886420 00
Q ss_pred ccccccCchhhhhhhcCCCChHHHHHHHHhhcChhhHHhcCCChhHhcccCeEEecCCCCHHHHHHHhc
Q 008329 482 DSSIGFGAPVRANMRAGGVTDAVVTSSLMETVESSDLIAYGLIPEFVGRFPVLVSLLALTENQLVQKCH 550 (570)
Q Consensus 482 d~~I~f~~p~~e~~~~~~~~~~~~~~~Ll~~l~~~dl~~~gl~Pefl~Rf~~iv~l~~lseedL~~IL~ 550 (570)
...+.|.|++||.. +.+..++++++.+|..
T Consensus 1437 --------------------------------------r~~l~~Rf~r~F~v-i~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1437 --------------------------------------RVQLTHRFLRHAPI-LLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp --------------------------------------CCCCCHHHHTTCCE-EECCCCCHHHHHHHHH
T ss_pred --------------------------------------CccCCHHHHhhceE-EEeCCCCHHHHHHHHH
Confidence 01266788888855 6778888888888843
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.89 E-value=0.00012 Score=69.02 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
.+.|+||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 467999999999999999999886443
No 101
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=2.6e-05 Score=73.86 Aligned_cols=45 Identities=36% Similarity=0.510 Sum_probs=28.0
Q ss_pred CCCCCCCCcccccCC-cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 317 TTDGVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 317 ~~~~ld~is~~i~~~-~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
...+++++++.+.++ .++|+||+|+||||+++.+|+.++.+++..
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 455788999998766 566999999999999999999999888653
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.52 E-value=4.8e-05 Score=73.46 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=43.7
Q ss_pred cEEEECCCCCchHHHHHHHHHH--------hC-CcEEEeecccccccccc-------------cchh-hHHHHHHhhhcc
Q 008329 332 NILLMGPTGSGKTLLAKTLARY--------VN-VPFVIADATTLTQAGYV-------------GEDV-ESILYKLLTVSD 388 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~--------lg-~~fv~i~~s~l~~~g~v-------------Ge~~-~~~lr~lf~~a~ 388 (570)
-.|++|+||+|||++|..++.. .+ ++++..+..++.. +.+ .+.. ...+.+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~--- 82 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIK--- 82 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTT---
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhh---
Confidence 5679999999999999886433 24 6666666655542 221 1100 011121111
Q ss_pred hhHhhhcCeEEEEcchhhhhhh
Q 008329 389 YNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 389 ~~v~~~~~gILfIDEID~L~~~ 410 (570)
.....+.||+|||++.+.+.
T Consensus 83 --~~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 83 --KPENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp --SGGGTTCEEEETTGGGTSBC
T ss_pred --ccccCceEEEEEChhhhccC
Confidence 02245889999999999654
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.45 E-value=0.00041 Score=89.63 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=50.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcchhhhhhh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEVDKITKK 410 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEID~L~~~ 410 (570)
+..+.||+|||||++++.+|+.+|.+++.++|++-... ..+.+.|... ...++..++||++++..+
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~ 671 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER 671 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH
Confidence 45689999999999999999999999999999874432 1222333322 235778899999999876
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.35 E-value=0.00031 Score=87.54 Aligned_cols=78 Identities=24% Similarity=0.249 Sum_probs=48.7
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc---cccccch-----------hhHHHHHHhhhcchhHh
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGED-----------VESILYKLLTVSDYNVA 392 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~---~g~vGe~-----------~~~~lr~lf~~a~~~v~ 392 (570)
...++|+||||||||+||.+++... +.....++..+... ....|.+ .+..++.+.. .+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~----lvr 1502 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA----LAR 1502 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH----HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH----HHh
Confidence 4578899999999999999998665 45566666654321 1111210 0122222221 223
Q ss_pred hhcCeEEEEcchhhhhhhh
Q 008329 393 AAQQGIVYIDEVDKITKKA 411 (570)
Q Consensus 393 ~~~~gILfIDEID~L~~~r 411 (570)
...+.+|+|||++.+.+.+
T Consensus 1503 ~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHH
T ss_pred cCCCCEEEEcChhHhcccc
Confidence 3578899999999988754
No 105
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.24 E-value=0.0014 Score=70.32 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+.+++.|+||||||+++.+++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998776
No 106
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.24 E-value=0.00096 Score=63.98 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.1
Q ss_pred cccCCcEE-EECCCCCchHHHHHHHH
Q 008329 327 ELEKSNIL-LMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 327 ~i~~~~vL-L~GPPGTGKTtLAraLA 351 (570)
.++++.++ |.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45556555 99999999999999998
No 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.21 E-value=0.0002 Score=66.19 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=28.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|+|++|+||||+|+.+|+.++.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5788999999999999999999999888754
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.17 E-value=0.00031 Score=64.31 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=28.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
..++|+|+||+||||+|+++++.++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 457899999999999999999999888876554
No 109
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.11 E-value=0.00084 Score=81.31 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=39.3
Q ss_pred CCCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeeccc
Q 008329 317 TTDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (570)
Q Consensus 317 ~~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~ 365 (570)
+..+|++++++++++..+ ++||+|+||||++++|.+++... -+.+++.+
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~ 481 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVD 481 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCcc
Confidence 346899999999999877 99999999999999999887432 24455543
No 110
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.00042 Score=62.62 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.++|.|++|+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4779999999999999999999998876433
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.94 E-value=0.0014 Score=61.84 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=25.6
Q ss_pred ccCCc-EEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 328 i~~~~-vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
++++. ++|.||+|+||||+++.++..+ +..++.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44454 4599999999999999999654 44554444
No 112
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.0014 Score=61.93 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=17.8
Q ss_pred cEEEECCCCCchHHHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-++++||+|+||||++..++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999998655544
No 113
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.94 E-value=0.00051 Score=83.19 Aligned_cols=50 Identities=22% Similarity=0.451 Sum_probs=40.1
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCC--cEEEeeccccc
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNV--PFVIADATTLT 367 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~l~ 367 (570)
..+|++++++++++..+ |+||+|+||||++++|.+.+.. --+.+|+.++.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh
Confidence 35899999999999877 9999999999999999988732 13556665543
No 114
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.92 E-value=0.0011 Score=73.57 Aligned_cols=38 Identities=34% Similarity=0.573 Sum_probs=34.3
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
..++++++++++++.++ ++||+|+||||+++++++.+.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 35899999999999887 999999999999999998774
No 115
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.92 E-value=0.00055 Score=63.23 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=27.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3588999999999999999999999887643
No 116
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.92 E-value=0.00041 Score=67.03 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.|++++++++++.++ |+||+|+|||||+++|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478899999888766 99999999999999999987
No 117
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.92 E-value=0.00049 Score=63.31 Aligned_cols=29 Identities=41% Similarity=0.691 Sum_probs=26.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.++|.|+||+||||+|+.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68899999999999999999999987764
No 118
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00048 Score=64.29 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=25.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHH-hCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY-VNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~-lg~~fv~ 360 (570)
..++|+|+||+||||+++.+++. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 45779999999999999999998 6766653
No 119
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00048 Score=67.35 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=25.7
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~ 357 (570)
..+++++++.+.++.++ |.||+|+||||+++.|+..++..
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34789999999988766 99999999999999999987643
No 120
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.90 E-value=0.0011 Score=67.61 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=51.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CC-cE--EEeecccccccccccchhhHHHHHHhhhcchhHhhhcCeEEEEcch
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NV-PF--VIADATTLTQAGYVGEDVESILYKLLTVSDYNVAAAQQGIVYIDEV 404 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~-~f--v~i~~s~l~~~g~vGe~~~~~lr~lf~~a~~~v~~~~~gILfIDEI 404 (570)
+.+||+||+|.||++.++.+++.+ +. ++ +.++. ..+ ++++...+..........|++|||+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------~~~----~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---------NTD----WNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---------TCC----HHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---------CCC----HHHHHHHhcCcCCccCCeEEEEECC
Confidence 578899999999999999998865 21 21 22211 012 2333333322222345679999999
Q ss_pred hh-hhhhhhhcccCCCCchHHHHHHHHHHHcC
Q 008329 405 DK-ITKKAESLNISRDVSGEGVQQALLKMLEG 435 (570)
Q Consensus 405 D~-L~~~r~~~~~~~~~~~e~vq~~LL~~LEg 435 (570)
+. +..+ .+++|++.+|.
T Consensus 86 ~~kl~~~--------------~~~aLl~~le~ 103 (343)
T 1jr3_D 86 ENGPNAA--------------INEQLLTLTGL 103 (343)
T ss_dssp SSCCCTT--------------HHHHHHHHHTT
T ss_pred CCCCChH--------------HHHHHHHHHhc
Confidence 98 7654 78999999984
No 121
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.89 E-value=0.0003 Score=74.40 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=27.9
Q ss_pred cccccCC-cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 325 TVELEKS-NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 325 s~~i~~~-~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
++.++++ .++|+||||+||||+++++++..+..++.
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3444444 55699999999999999999988776543
No 122
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.88 E-value=0.0007 Score=61.67 Aligned_cols=29 Identities=41% Similarity=0.819 Sum_probs=25.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
..+.|+||+|+||||+++.+|+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46789999999999999999999987654
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.88 E-value=0.00058 Score=62.29 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=27.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+++|.|++||||||+++.||+.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 478899999999999999999999998875
No 124
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.86 E-value=0.00064 Score=62.70 Aligned_cols=30 Identities=43% Similarity=0.630 Sum_probs=26.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|+|+||+||||+++.+++.++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 578899999999999999999999877654
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.81 E-value=0.0006 Score=63.15 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=28.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeecccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l 366 (570)
.++|.||||+||||+++.|++..+...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 45699999999999999999987767676766543
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.77 E-value=0.0022 Score=61.22 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=25.7
Q ss_pred cEEEECCCCCchHHHHHHHHHH--h-------CCcEEEeeccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARY--V-------NVPFVIADATT 365 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~--l-------g~~fv~i~~s~ 365 (570)
-++|+||||+|||++++.++.. . +...+.++..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4559999999999999999984 3 34456666544
No 127
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.76 E-value=0.00072 Score=62.45 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=26.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+++.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 3567999999999999999999998877653
No 128
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.75 E-value=0.00093 Score=66.11 Aligned_cols=32 Identities=41% Similarity=0.467 Sum_probs=28.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
.++|+||||+||||+|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 46799999999999999999999988876554
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.70 E-value=0.0022 Score=60.26 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=28.0
Q ss_pred cCCc-EEEECCCCCchHHHHHHHHHHhCCcEEEeeccc
Q 008329 329 EKSN-ILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (570)
Q Consensus 329 ~~~~-vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~ 365 (570)
+++. ++|+||||+|||++++.++...+.+.+.++..+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3344 459999999999999999985566666666543
No 130
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.68 E-value=0.00089 Score=59.97 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=25.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
-++|.||||+||||+|+.+ +.++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4679999999999999999 8888877653
No 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.68 E-value=0.0013 Score=61.78 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=26.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|.|++|+||||+|+.|++.++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 468899999999999999999999877654
No 132
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.68 E-value=0.00094 Score=60.67 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=26.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|.|++|+||||+|+.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358899999999999999999999987764
No 133
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.67 E-value=0.0036 Score=65.65 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=44.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc---ccccchh-------hHHHHHHhhhcchhHhhhcCeE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDV-------ESILYKLLTVSDYNVAAAQQGI 398 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~---g~vGe~~-------~~~lr~lf~~a~~~v~~~~~gI 398 (570)
-++|+||||+|||||+..++..+ +...+.++....... .-+|.+. ...+.+.+......+....+.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 34599999999999999998765 556666666542210 0001000 0001111111111122245679
Q ss_pred EEEcchhhhhh
Q 008329 399 VYIDEVDKITK 409 (570)
Q Consensus 399 LfIDEID~L~~ 409 (570)
++||++..+.+
T Consensus 143 vVIDSi~~l~~ 153 (356)
T 3hr8_A 143 IVVDSVAALVP 153 (356)
T ss_dssp EEEECTTTCCC
T ss_pred EEehHhhhhcC
Confidence 99999998876
No 134
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.00091 Score=61.52 Aligned_cols=30 Identities=13% Similarity=0.260 Sum_probs=26.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|.|+||+||||+|+.+++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 457799999999999999999999877654
No 135
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.66 E-value=0.0043 Score=68.89 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=25.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
+.+++.||||||||+++.+++..+ +.++....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 577899999999999999998765 55555443
No 136
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.64 E-value=0.00037 Score=69.56 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=27.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..+.|+|++|+||||+++.+|+.++.+++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 567799999999999999999999987765
No 137
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.64 E-value=0.0022 Score=71.14 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=38.3
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeeccc
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~ 365 (570)
..++++++++++++.++ ++||+|+||||+++++++.+... -+.+++.+
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 45899999999999888 99999999999999999877432 23444443
No 138
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.64 E-value=0.0012 Score=62.11 Aligned_cols=31 Identities=35% Similarity=0.627 Sum_probs=27.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|+|+||+||||+|+.|++.++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3577999999999999999999999887654
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.64 E-value=0.005 Score=60.45 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i 361 (570)
.-++++||+|+||||++..++..+ +...+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 345589999999999998887655 4455544
No 140
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.64 E-value=0.00042 Score=68.18 Aligned_cols=37 Identities=19% Similarity=0.489 Sum_probs=33.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3789999999999888 999999999999999998763
No 141
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.62 E-value=0.0011 Score=61.48 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+|+.+++.++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4577999999999999999999998776543
No 142
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0029 Score=64.59 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=26.9
Q ss_pred CCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 322 d~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+.+++.+.++.++ |+||+|+||||+++.||..+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666666555 99999999999999999886
No 143
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.59 E-value=0.0055 Score=63.80 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=44.6
Q ss_pred cCCc-EEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc---ccccchhhH-------HHHHHhhhcchhHhhh
Q 008329 329 EKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDVES-------ILYKLLTVSDYNVAAA 394 (570)
Q Consensus 329 ~~~~-vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~---g~vGe~~~~-------~lr~lf~~a~~~v~~~ 394 (570)
+++. ++|+||||+|||++|..++..+ +.....++....... ...|.+..+ ...+.+......+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 3444 5599999999999999998654 455665665432110 011111000 0111111111111223
Q ss_pred cCeEEEEcchhhhhh
Q 008329 395 QQGIVYIDEVDKITK 409 (570)
Q Consensus 395 ~~gILfIDEID~L~~ 409 (570)
.+.+|+||++..+.+
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 578999999999974
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.57 E-value=0.0013 Score=59.47 Aligned_cols=29 Identities=38% Similarity=0.582 Sum_probs=26.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.++|.|++|+||||+|+.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999988764
No 145
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.57 E-value=0.00059 Score=63.34 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 322 d~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++.+.++.++ |.||.|+|||||+++|++.+
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455666667665 99999999999999999987
No 146
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.55 E-value=0.00044 Score=67.42 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 18 ~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3789999999999877 999999999999999998763
No 147
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0014 Score=60.26 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 57799999999999999999999876543
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.54 E-value=0.0016 Score=67.24 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=41.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC--cEEEeeccc-ccc------cccc---cchhhHHHHHHhhhcchhHhhhcCeE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV--PFVIADATT-LTQ------AGYV---GEDVESILYKLLTVSDYNVAAAQQGI 398 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~--~fv~i~~s~-l~~------~g~v---Ge~~~~~lr~lf~~a~~~v~~~~~gI 398 (570)
..+++.||+|+||||+++++++.+.. ..+.++... +.. .+++ |+. .+..+..+ ....|.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~----~r~~la~a----L~~~p~i 243 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNIT----SADCLKSC----LRMRPDR 243 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBC----HHHHHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChh----HHHHHHHH----hhhCCCE
Confidence 46779999999999999999998732 244454432 110 1133 222 12222221 1246789
Q ss_pred EEEcchhh
Q 008329 399 VYIDEVDK 406 (570)
Q Consensus 399 LfIDEID~ 406 (570)
|++||...
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999765
No 149
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.54 E-value=0.0013 Score=62.39 Aligned_cols=30 Identities=27% Similarity=0.546 Sum_probs=26.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
.++|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998777644
No 150
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.52 E-value=0.0013 Score=60.36 Aligned_cols=29 Identities=41% Similarity=0.505 Sum_probs=22.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
..++|.|+||+||||+|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45779999999999999999999998876
No 151
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.52 E-value=0.0014 Score=62.50 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=26.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4678999999999999999999998776543
No 152
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0014 Score=61.96 Aligned_cols=30 Identities=33% Similarity=0.578 Sum_probs=26.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
.++|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998877644
No 153
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.51 E-value=0.004 Score=67.98 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=35.4
Q ss_pred CCCCCCcc-cccCCcEE-EECCCCCchHHHHHH--HHHHh--CCcEEEeeccc
Q 008329 319 DGVDDDTV-ELEKSNIL-LMGPTGSGKTLLAKT--LARYV--NVPFVIADATT 365 (570)
Q Consensus 319 ~~ld~is~-~i~~~~vL-L~GPPGTGKTtLAra--LA~~l--g~~fv~i~~s~ 365 (570)
.+||++++ .++++.++ |.||+|+|||||++. ++... +..-+.++..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 47888899 88887666 999999999999999 55554 33445555544
No 154
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.51 E-value=0.0016 Score=59.60 Aligned_cols=29 Identities=34% Similarity=0.588 Sum_probs=24.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
..++|+||+|+||||+++.+++.++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 35669999999999999999998876554
No 155
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0012 Score=60.69 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..++|.|+||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999999886
No 156
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.50 E-value=0.0006 Score=67.85 Aligned_cols=36 Identities=25% Similarity=0.666 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999876
No 157
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.49 E-value=0.0013 Score=61.01 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|.|+||+||||+|+.+++.++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 457799999999999999999999876654
No 158
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.49 E-value=0.00058 Score=68.28 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999887 99999999999999999876
No 159
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.48 E-value=0.00057 Score=69.11 Aligned_cols=35 Identities=14% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 799999999999877 99999999999999999876
No 160
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.48 E-value=0.00067 Score=66.76 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=33.6
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999877 99999999999999999876
No 161
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.47 E-value=0.0082 Score=66.38 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=34.2
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
..++++++++++++.++ ++||+|+||||+++++++.+.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 35799999999999887 999999999999999998774
No 162
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.46 E-value=0.00057 Score=68.63 Aligned_cols=36 Identities=25% Similarity=0.646 Sum_probs=33.2
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4789999999999888 99999999999999999876
No 163
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.45 E-value=0.0021 Score=60.58 Aligned_cols=34 Identities=35% Similarity=0.616 Sum_probs=26.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l 366 (570)
..+.|.||+|+||||+++.|++.+|..+ ++..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 3566999999999999999999987644 444443
No 164
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.45 E-value=0.0015 Score=59.97 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+|+.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3577999999999999999999998766543
No 165
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.44 E-value=0.0013 Score=59.70 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=22.9
Q ss_pred CcEEEECCCCCchHHHHHHHHH-HhCCcE
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR-YVNVPF 358 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~-~lg~~f 358 (570)
.-++|.|+||+||||+|+.+++ .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 3577999999999999999998 455433
No 166
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.40 E-value=0.0019 Score=62.52 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+|+.||+.++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4688999999999999999999999776543
No 167
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.00071 Score=66.66 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=32.8
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999777 99999999999999999876
No 168
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.38 E-value=0.00081 Score=65.79 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999887 99999999999999999876
No 169
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.38 E-value=0.00074 Score=67.76 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=33.4
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 38 ~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3789999999999877 999999999999999998763
No 170
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.38 E-value=0.0019 Score=60.29 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.||+|+||||+++.|++.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 344999999999999999999863
No 171
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.37 E-value=0.00083 Score=66.22 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=33.5
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999777 99999999999999999876
No 172
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.36 E-value=0.00083 Score=70.61 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=33.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|||||||.++|+...
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4789999999999887 99999999999999999876
No 173
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.35 E-value=0.0019 Score=63.50 Aligned_cols=36 Identities=31% Similarity=0.443 Sum_probs=30.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l 366 (570)
..++|.|+||+||||+|+.+++.++...+.++...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 467799999999999999999998766666676655
No 174
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.34 E-value=0.0018 Score=59.90 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=22.5
Q ss_pred CcccccCCcEE-EECCCCCchHHHHHHH
Q 008329 324 DTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (570)
Q Consensus 324 is~~i~~~~vL-L~GPPGTGKTtLAraL 350 (570)
+++.++++.++ |+||+|+||||+++++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 56677777666 9999999999999953
No 175
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.34 E-value=0.00079 Score=66.74 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=33.2
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999877 99999999999999999876
No 176
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.34 E-value=0.00092 Score=67.20 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+..+
T Consensus 33 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999876
No 177
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.33 E-value=0.0018 Score=62.21 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=26.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..++|.|+||+||||+|+.|++.++.+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 457899999999999999999999876654
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.32 E-value=0.0019 Score=61.87 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|+||+||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 3578999999999999999999998777653
No 179
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.32 E-value=0.00098 Score=68.55 Aligned_cols=38 Identities=24% Similarity=0.453 Sum_probs=31.0
Q ss_pred CCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCcE
Q 008329 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 321 ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~f 358 (570)
++++++.++++.++ |+||+|+|||||+++|++.+...+
T Consensus 116 L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 116 LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred hccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 45667777778776 999999999999999999884333
No 180
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.31 E-value=0.00099 Score=70.60 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=33.4
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|||||||.++|+...
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 4789999999999888 99999999999999999877
No 181
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.31 E-value=0.0021 Score=60.29 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.|++|+||||+++.+++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3567999999999999999999998766543
No 182
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.31 E-value=0.0024 Score=59.16 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=25.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
.++|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3679999999999999999999987665
No 183
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.31 E-value=0.0012 Score=65.36 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~ 353 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999877 9999999999999999996
No 184
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.31 E-value=0.0013 Score=63.33 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=20.1
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHH-HHhC
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLA-RYVN 355 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA-~~lg 355 (570)
..+++++.+.++.++ |+||+|+||||+++.|+ +.+.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 346778888888776 99999999999999999 8763
No 185
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.30 E-value=0.00088 Score=66.93 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999876
No 186
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.30 E-value=0.00076 Score=65.68 Aligned_cols=37 Identities=38% Similarity=0.657 Sum_probs=33.2
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999988777 999999999999999998763
No 187
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.30 E-value=0.023 Score=59.38 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=21.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+.+++.||+|+||||+.+++++.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 457799999999999999999877
No 188
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.29 E-value=0.0015 Score=62.35 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=25.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
..++|.||||+||||+++.||+.++.+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999986554
No 189
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.29 E-value=0.001 Score=66.43 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=33.2
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4799999999998777 99999999999999999876
No 190
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.27 E-value=0.0014 Score=65.79 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=32.7
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||+++|+...
T Consensus 34 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999877 99999999999999999973
No 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.27 E-value=0.0035 Score=57.62 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=26.5
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
+.|.|++|+||||+++.+++.+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999988 88877654
No 192
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.27 E-value=0.0009 Score=67.69 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 35 ~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4789999999998777 99999999999999999876
No 193
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.26 E-value=0.001 Score=66.19 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3688999999999777 999999999999999998763
No 194
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.25 E-value=0.0012 Score=69.27 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=33.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|||||||.++|+...
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4789999999998887 99999999999999999876
No 195
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.25 E-value=0.00097 Score=66.75 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3789999999999877 99999999999999999876
No 196
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.25 E-value=0.0023 Score=60.90 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
.++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998777654
No 197
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.25 E-value=0.0051 Score=63.90 Aligned_cols=41 Identities=39% Similarity=0.448 Sum_probs=31.2
Q ss_pred cccccCCcEE-EECCCCCchHHHHHHHHHHh---------CCcEEEeeccc
Q 008329 325 TVELEKSNIL-LMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (570)
Q Consensus 325 s~~i~~~~vL-L~GPPGTGKTtLAraLA~~l---------g~~fv~i~~s~ 365 (570)
...++++.++ |+||||+|||||++.++..+ +...+.++..+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4566677666 99999999999999999886 23546666644
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.24 E-value=0.0029 Score=60.06 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
..+.|.||+|+||||+++.+++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 35679999999999999999999987664
No 199
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.23 E-value=0.012 Score=57.33 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=27.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s 364 (570)
..+++.||+|+|||.+|.+++...+.+.+.+..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 4589999999999999999988887666655544
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.21 E-value=0.0038 Score=57.43 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=30.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
..+.|+|++|+||||+++.+++.+ +.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 356699999999999999999988 888887775443
No 201
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.19 E-value=0.001 Score=66.24 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=32.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+..+
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999777 99999999999999999876
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.18 E-value=0.014 Score=62.76 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s 364 (570)
+.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4556699999999999999999776 5566555543
No 203
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.17 E-value=0.0013 Score=69.18 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=33.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|||||||.++||...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4789999999998887 99999999999999999876
No 204
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.16 E-value=0.0091 Score=72.13 Aligned_cols=37 Identities=27% Similarity=0.543 Sum_probs=34.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.++++++++++++..+ |+||+|+|||||+++|++...
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4899999999999888 999999999999999998763
No 205
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.16 E-value=0.0027 Score=62.24 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
..++|.||||+||||+|+.|++.++.+.+..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678999999999999999999998766543
No 206
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.16 E-value=0.0013 Score=68.97 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4689999999998887 99999999999999999876
No 207
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.14 E-value=0.0032 Score=59.31 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=26.8
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
.+.|.||+|+||||+++++++.+ |...+.++..++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45599999999999999999988 544345555444
No 208
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.12 E-value=0.0015 Score=64.47 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=30.9
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.++++++++.+ .++ |.||+|+|||||.++|+..+
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999998 777 99999999999999999876
No 209
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.12 E-value=0.0014 Score=69.09 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|||||||.++||...
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3689999999998887 99999999999999999876
No 210
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.12 E-value=0.0015 Score=69.44 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.8
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++++.++.++ |.||+|||||||.++|+...
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45899999999999888 99999999999999999865
No 211
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.12 E-value=0.0021 Score=58.91 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.++|.|+||+||||+|+.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999885
No 212
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.12 E-value=0.0037 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=24.4
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
++|.||||+||+|.|+.||+.++.+.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 679999999999999999999987654
No 213
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0077 Score=63.20 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=26.3
Q ss_pred CCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 323 DDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 323 ~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++.+.++.++ |+||+|+||||+++.||..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456666666555 99999999999999999886
No 214
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.10 E-value=0.0046 Score=57.12 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.4
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
+.|.|++|+||||+++.+++.+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5799999999999999999998 88876543
No 215
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.10 E-value=0.0014 Score=69.04 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++||...
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3689999999998887 99999999999999999876
No 216
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.008 Score=57.31 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=25.5
Q ss_pred ccCC-cEEEECCCCCchHHHHHHHHHHh---CCcEEEeecc
Q 008329 328 LEKS-NILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (570)
Q Consensus 328 i~~~-~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s 364 (570)
++++ -+++.||||+|||+++..++... +...+.++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3444 45599999999999998886543 4455555543
No 217
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.08 E-value=0.0034 Score=65.12 Aligned_cols=33 Identities=42% Similarity=0.608 Sum_probs=29.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
..++|+||+|+|||++|+.+|+.++..++..|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 367899999999999999999999988877654
No 218
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.08 E-value=0.0036 Score=63.18 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=28.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~l 366 (570)
..++|.||||+||||+|+.+++.++..++.+++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 457799999999999999999988544566665433
No 219
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.07 E-value=0.0016 Score=68.74 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=33.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++.++.++ |.||+|+|||||.++|+...
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4799999999999888 99999999999999999876
No 220
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.05 E-value=0.003 Score=59.25 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.8
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEe
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIA 361 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i 361 (570)
.+.|.|++|+||||+++.|++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 477999999999999999999 88766543
No 221
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.05 E-value=0.0031 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-+.|+||+|+||||+++.|++.+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 45599999999999999999977
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.04 E-value=0.02 Score=61.83 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=27.9
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~ 365 (570)
+..+++.|++|+||||++..+|..+ +..+..+++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4566799999999999999999776 55665566543
No 223
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.03 E-value=0.0013 Score=68.82 Aligned_cols=35 Identities=31% Similarity=0.686 Sum_probs=32.7
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++++.++.++ |.||+|||||||.++||...
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 789999999998887 99999999999999999876
No 224
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.01 E-value=0.0043 Score=59.70 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=24.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
++|.|+||+||||+|+.|++.++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 6899999999999999999999876554
No 225
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.01 E-value=0.0036 Score=59.36 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=23.1
Q ss_pred cccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 327 ELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 327 ~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+.++.++ |.||+|+|||||+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45566666 999999999999999999874
No 226
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.98 E-value=0.0011 Score=69.32 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=32.5
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++++.++.++ |.||+|+|||||.++||...
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 688999999998887 99999999999999999876
No 227
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.97 E-value=0.0044 Score=57.69 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-CCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-g~~fv~i~ 362 (570)
..++|.|++|+||||+++.+++.+ +.+++.++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 457799999999999999999998 46666544
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.95 E-value=0.053 Score=55.48 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=25.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
-++++||+|+||||++..+|..+ +..+..+++
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 45599999999999999999876 445554444
No 229
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0036 Score=58.15 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..+.|.|++|+||||+++.|++. +.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 45679999999999999999998 777654
No 230
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.94 E-value=0.0046 Score=60.46 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=24.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
+-++|.||||+||+|.|+.|++.++.+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34568999999999999999999986544
No 231
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.94 E-value=0.0017 Score=66.01 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=33.0
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+.++.++ |.||+|+|||||.++|+..+
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4789999999999777 99999999999999999876
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.93 E-value=0.0045 Score=57.69 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=26.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+.|.|++|+||||+++.+|+.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 46699999999999999999999987764
No 233
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.93 E-value=0.012 Score=61.83 Aligned_cols=78 Identities=21% Similarity=0.238 Sum_probs=43.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccccc---cccchhh-------HHHHHHhhhcchhHhhhcCeE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQAG---YVGEDVE-------SILYKLLTVSDYNVAAAQQGI 398 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~g---~vGe~~~-------~~lr~lf~~a~~~v~~~~~gI 398 (570)
-++|+||||+|||++|..++..+ +.+.+.++...-.... ..|.+.. ....+++......+......+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 45599999999999999887654 5566666654321100 0111100 001111111111112235679
Q ss_pred EEEcchhhhhh
Q 008329 399 VYIDEVDKITK 409 (570)
Q Consensus 399 LfIDEID~L~~ 409 (570)
|+||.+..+.+
T Consensus 156 VVIDsl~~l~~ 166 (366)
T 1xp8_A 156 VVVDSVAALTP 166 (366)
T ss_dssp EEEECTTTCCC
T ss_pred EEEeChHHhcc
Confidence 99999999874
No 234
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.92 E-value=0.0052 Score=59.80 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=24.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
..+.|.||+|+||||+++.|++.++...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4677999999999999999999887644
No 235
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.91 E-value=0.0013 Score=67.45 Aligned_cols=38 Identities=26% Similarity=0.577 Sum_probs=33.9
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
..+|+++++.++++.++ |+||+|+|||||+++|++.+.
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34789999999999877 999999999999999998773
No 236
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.90 E-value=0.0038 Score=58.70 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=24.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+.|.||+|+||||+++.+++ +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 466999999999999999998 7877653
No 237
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.88 E-value=0.0067 Score=70.95 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHH
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~ 353 (570)
..+++++++.+..+.++ |+||+|+||||+.+.++..
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 46788999998776655 9999999999999999744
No 238
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.87 E-value=0.0053 Score=60.65 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=28.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHH---hCCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY---VNVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~---lg~~fv~i~~s~l 366 (570)
.-++|.|+||+||||+|+.+++. .+.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 35779999999999999999988 6777775555443
No 239
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.84 E-value=0.0049 Score=57.45 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
..++|.|+||+||||+|+.|++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 35779999999999999999998875
No 240
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.80 E-value=0.013 Score=70.87 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=37.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc--EEEeeccc
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP--FVIADATT 365 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~--fv~i~~s~ 365 (570)
.+|++++++++++.++ |+||+|+|||||+++|++.+... -+.+++.+
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~ 453 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEE
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 5899999999999888 99999999999999999887432 23444443
No 241
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.79 E-value=0.0085 Score=65.61 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=28.2
Q ss_pred CCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 322 d~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++.+.++.++ |+||+|+||||+++.|+..+
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 5677777777666 99999999999999999876
No 242
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.79 E-value=0.0031 Score=62.99 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh----CCcEEEee
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV----NVPFVIAD 362 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l----g~~fv~i~ 362 (570)
.+|+++++.+.++.++ |.||||+||||+++.++..+ |.++..++
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4688888888888776 99999999999999998775 33554444
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.79 E-value=0.012 Score=61.11 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=26.2
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh-----CCcEEEeeccc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV-----NVPFVIADATT 365 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l-----g~~fv~i~~s~ 365 (570)
++-++++||||+|||+|+..++..+ +...+.++...
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3446799999999999987776443 45566677654
No 244
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.78 E-value=0.03 Score=58.48 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=28.0
Q ss_pred ccCCc-EEEECCCCCchHHHHHHHHHHh---CCcEEEeeccc
Q 008329 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (570)
Q Consensus 328 i~~~~-vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~ 365 (570)
++++. ++|+|+||+|||++|..++..+ +.+.+.++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 33444 5599999999999999998654 55666677643
No 245
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.74 E-value=0.0022 Score=64.28 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=31.5
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++++. +.++ |.||+|+|||||.++|+..+
T Consensus 19 ~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 19 FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999 8666 99999999999999999886
No 246
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.74 E-value=0.022 Score=71.34 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=48.9
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccccccc---ccccchh----------hHHHHHHhhhcchhHh
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQA---GYVGEDV----------ESILYKLLTVSDYNVA 392 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~~---g~vGe~~----------~~~lr~lf~~a~~~v~ 392 (570)
+...++++||||||||++|.+++... |.+...++..+..+. ...|-++ ......+.. ....
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~---~l~~ 1156 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALAR 1156 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH---HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH---HHHH
Confidence 34567799999999999999997554 667777777664321 1111110 000111110 0112
Q ss_pred hhcCeEEEEcchhhhhhhhh
Q 008329 393 AAQQGIVYIDEVDKITKKAE 412 (570)
Q Consensus 393 ~~~~gILfIDEID~L~~~r~ 412 (570)
...+.+|+|||+..+.+..+
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~e 1176 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKAE 1176 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHH
T ss_pred hCCCCEEEECCccccccccc
Confidence 34678999999999976544
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.68 E-value=0.018 Score=58.77 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=27.4
Q ss_pred cCCc-EEEECCCCCchHHHHHHHHHHh---------CCcEEEeeccc
Q 008329 329 EKSN-ILLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (570)
Q Consensus 329 ~~~~-vLL~GPPGTGKTtLAraLA~~l---------g~~fv~i~~s~ 365 (570)
+++. ++|+||||+|||++|..++..+ +...+.++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3444 5599999999999999998764 44556666544
No 248
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.65 E-value=0.01 Score=54.81 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=26.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~ 365 (570)
..++|.|++|+||||+++.+++.+ +.++..++...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 356699999999999999999887 34455555433
No 249
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.63 E-value=0.0032 Score=59.02 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
..++|.|++|+||||+++.+++.++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 456799999999999999999987543
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.62 E-value=0.0079 Score=55.68 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=24.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeeccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADATT 365 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s~ 365 (570)
-++|.||+|+||||+++.|++..+.. +.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcccc
Confidence 46699999999999999999866542 3344433
No 251
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.62 E-value=0.0068 Score=63.72 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=26.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+++|+|++|+||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 358899999999999999999999877643
No 252
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.0047 Score=64.47 Aligned_cols=32 Identities=34% Similarity=0.515 Sum_probs=27.8
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
.++|+||+|+|||+|+..||+.++.+++..|.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 56799999999999999999999887766554
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.58 E-value=0.016 Score=71.70 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=47.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccccc---cccccchh-------hHHHHHHhhhcchhHhhhcCe
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTLTQ---AGYVGEDV-------ESILYKLLTVSDYNVAAAQQG 397 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l~~---~g~vGe~~-------~~~lr~lf~~a~~~v~~~~~g 397 (570)
..++|.||||+|||++|..+|..+ +.++..++..+... ....|.+. ...+.+++...+..+....+.
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 356699999999999999998765 44666666654321 01111100 011223333332222335678
Q ss_pred EEEEcchhhhhh
Q 008329 398 IVYIDEVDKITK 409 (570)
Q Consensus 398 ILfIDEID~L~~ 409 (570)
+|+||++..+.+
T Consensus 813 lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 813 VIVVDSVAALTP 824 (1706)
T ss_dssp EEEESCSTTCCC
T ss_pred EEEEechhhhcc
Confidence 999999999985
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.56 E-value=0.0073 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=22.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..++|+||+|+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4677999999999999999999874
No 255
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0073 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.-+.|+||+|+|||||++.|++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566999999999999999998764
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.54 E-value=0.024 Score=58.30 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=30.7
Q ss_pred CCCcccccCCcEE-EECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 322 d~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
.++++...++.++ ++||+|+||||++..+|..+ +..+..+++
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3556665555544 99999999999999999776 555555554
No 257
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.54 E-value=0.0073 Score=55.48 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=28.3
Q ss_pred CCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 322 d~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+++++.+.++-.+|+||+|+|||+++++|+..++
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556677777666999999999999999998875
No 258
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.52 E-value=0.0094 Score=58.91 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=25.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..+.|.||+|+||||+++.|++.++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 357799999999999999999999876643
No 259
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.50 E-value=0.0078 Score=57.41 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
+.|+|++||||||+++.+++.+|.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4499999999999999999998877754
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.44 E-value=0.008 Score=57.01 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.||+|+|||||+++|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 344999999999999999999874
No 261
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.43 E-value=0.0099 Score=58.47 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=24.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
.+.|.||+|+||||+++.||+.++..++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4559999999999999999999987654
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.40 E-value=0.06 Score=51.95 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
.+.+++++++|.||||+|-.+|-.+ |..+..++
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4688899999999999999998554 66666653
No 263
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.36 E-value=0.0086 Score=56.82 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+.|.|++|+||||+++.+++ ++.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 466999999999999999998 7776654
No 264
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.35 E-value=0.0068 Score=57.10 Aligned_cols=28 Identities=43% Similarity=0.509 Sum_probs=23.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHh-CCcEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l-g~~fv 359 (570)
-+.|.|++|+||||+++.|++.+ +..++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 45599999999999999999987 54443
No 265
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.35 E-value=0.013 Score=68.55 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHH
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~ 352 (570)
..+++++++....+.++ |+||+|+||||+.+.++.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35677888888766555 999999999999999963
No 266
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.35 E-value=0.01 Score=56.15 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=26.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..+.|.|++|+||||+++.+++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 357799999999999999999999977654
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.35 E-value=0.0077 Score=56.66 Aligned_cols=24 Identities=50% Similarity=0.565 Sum_probs=21.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.||+|+||||+++.|++.++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 345999999999999999999886
No 268
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.33 E-value=0.036 Score=52.22 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=24.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
-+.|.|++|+||||+++.++..+ +.+++..+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 34599999999999999999876 55555443
No 269
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.32 E-value=0.0096 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.||+|+||||+++.|++.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999998864
No 270
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.29 E-value=0.021 Score=63.67 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+.+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999988776554
No 271
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.26 E-value=0.0092 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.-+.|.||+|+||||+++.|++.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456999999999999999999874
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.25 E-value=0.008 Score=58.52 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=33.6
Q ss_pred CCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 319 ~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
..+.+.-+++....++|.||+|+|||++|..+++..+ +++..|
T Consensus 23 ~~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 23 RSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp CCEESEEEEETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred eeeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 3456666777778899999999999999999998765 554433
No 273
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.25 E-value=0.033 Score=57.51 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=27.5
Q ss_pred ccCCcE-EEECCCCCchHHHHHHHHHHh---------CCcEEEeeccc
Q 008329 328 LEKSNI-LLMGPTGSGKTLLAKTLARYV---------NVPFVIADATT 365 (570)
Q Consensus 328 i~~~~v-LL~GPPGTGKTtLAraLA~~l---------g~~fv~i~~s~ 365 (570)
++.+.+ +|+||||+|||++|..+|... +...+.++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 344544 599999999999999998763 34556666544
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.23 E-value=0.0068 Score=60.49 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=24.8
Q ss_pred CCCCCcccccCC-cEEEECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~-~vLL~GPPGTGKTtLAraLA~~l 354 (570)
++++++ +.++ .++++||+|+||||+++++++.+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344444 3334 45599999999999999999876
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.22 E-value=0.0096 Score=56.17 Aligned_cols=26 Identities=54% Similarity=0.644 Sum_probs=21.5
Q ss_pred cCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 329 EKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 329 ~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++.++ |.||+|+|||||++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345455 99999999999999999854
No 276
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.19 E-value=0.01 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..++|.|++|+||||+++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999998764
No 277
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.19 E-value=0.0085 Score=66.23 Aligned_cols=37 Identities=22% Similarity=0.499 Sum_probs=33.7
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..++++++++++++.++ ++||+|+||||+++++++.+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45899999999999777 99999999999999999876
No 278
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.012 Score=57.39 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCCCCccccc---CC-cEEEECCCCCchHHHHHHHHHHhC--CcEEE
Q 008329 320 GVDDDTVELE---KS-NILLMGPTGSGKTLLAKTLARYVN--VPFVI 360 (570)
Q Consensus 320 ~ld~is~~i~---~~-~vLL~GPPGTGKTtLAraLA~~lg--~~fv~ 360 (570)
.+.++++... .+ -++|.||+|+||||+++.+++.++ .+++.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3444444443 23 455999999999999999999986 35543
No 279
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.16 E-value=0.014 Score=56.35 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=25.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
..+.|.|++|+||||+++.+++.++.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 356699999999999999999999877653
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.16 E-value=0.011 Score=55.85 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..+.|+||+|+|||||++.|++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677999999999999999998764
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.11 E-value=0.011 Score=60.99 Aligned_cols=33 Identities=45% Similarity=0.679 Sum_probs=27.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~ 363 (570)
.-+++.||+|+|||+||..+|+.++..++..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 356699999999999999999999877766544
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.10 E-value=0.013 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.|.|.|++|+||||+|+.|++.++.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 46699999999999999999998866
No 283
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.08 E-value=0.031 Score=57.76 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-+.|+||+|+||||+++.||..+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 44499999999999999999876
No 284
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.03 E-value=0.0085 Score=59.64 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=23.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-CCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-NVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-g~~fv 359 (570)
.-++|.|+||+||||+|+.+++.+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 357799999999999999999864 54444
No 285
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.03 E-value=0.048 Score=57.90 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=19.8
Q ss_pred ccCCcEE-EECCCCCchHHHHHHHHH
Q 008329 328 LEKSNIL-LMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 328 i~~~~vL-L~GPPGTGKTtLAraLA~ 352 (570)
++++.++ |+||||+|||||++.++-
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4445555 999999999999997763
No 286
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.95 E-value=0.013 Score=61.03 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=26.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
-++|.||+|+|||++|+.||+.++..++..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 5679999999999999999999986555444
No 287
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.95 E-value=0.012 Score=60.90 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=26.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.-+++.||+|+|||+||..+|+.++..++..|
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 34669999999999999999999876665444
No 288
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.85 E-value=0.018 Score=54.63 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=27.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC----CcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN----VPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg----~~fv~i~~s~ 365 (570)
..++|.|++|+||||+++.+++.++ .+++.++...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3566999999999999999998774 4566666443
No 289
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.80 E-value=0.0081 Score=66.42 Aligned_cols=38 Identities=21% Similarity=0.504 Sum_probs=34.1
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
..++++++++++++.++ |+||+|+|||||++++++.+.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 45899999999999777 999999999999999998873
No 290
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.75 E-value=0.027 Score=65.00 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=29.0
Q ss_pred CCCCCCCcccccCCc-EEEECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~-vLL~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++. .++. ++|+||+|+||||+.++++...
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4577888888 5554 4499999999999999998653
No 291
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.74 E-value=0.12 Score=49.22 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=22.8
Q ss_pred cEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
-.+++||.|+||||.+..++..+ +..+..+.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34599999999999888877665 55554443
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.74 E-value=0.024 Score=54.01 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=23.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~f 358 (570)
+.++|+||+|+|||||++.+.+.....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4689999999999999999987764333
No 293
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.59 E-value=0.014 Score=63.55 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=31.9
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++.+.+ .++ |.||+|+|||||.++|+..+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 4568899999988 666 99999999999999999887
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.56 E-value=0.022 Score=58.30 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 330 KSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 330 ~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
++.++ |.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34455 999999999999999999873
No 295
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.55 E-value=0.023 Score=54.27 Aligned_cols=28 Identities=39% Similarity=0.477 Sum_probs=25.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
-|.|.|++|||||++++.+|+.+|.+|+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4569999999999999999999999987
No 296
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.54 E-value=0.02 Score=55.55 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.||+|+|||||.++|+....
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 444999999999999999999874
No 297
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.48 E-value=0.014 Score=59.36 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhC
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.|.||+|+||||+++.|+..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 44999999999999999999875
No 298
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.47 E-value=0.0076 Score=66.83 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.++++++++++++.++ |+||+|+|||||++++++.+.
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3789999999999777 999999999999999998763
No 299
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.42 E-value=0.016 Score=60.36 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=25.7
Q ss_pred ccccCCcEE-EECCCCCchHHHHHHHHHHhCCcE
Q 008329 326 VELEKSNIL-LMGPTGSGKTLLAKTLARYVNVPF 358 (570)
Q Consensus 326 ~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~f 358 (570)
+.+.++..+ |.||+|+|||||.+.|++......
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 334445454 999999999999999999986443
No 300
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.39 E-value=0.013 Score=60.55 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+++++++.+.++.++ |.||||+|||||.++++..+
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 345666777667666 99999999999999999876
No 301
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.38 E-value=0.019 Score=57.51 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
.+.|.|++|+||||+|+.++ .++.+++.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 46699999999999999999 47766543
No 302
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.38 E-value=0.014 Score=62.05 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
.-++|+|+||+||||+|+.+++.++..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 35669999999999999999998875543
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.35 E-value=0.011 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEECCCCCchHHHHHHHHHHhC
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.|.|++|+||||+++.|++.++
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999884
No 304
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.28 E-value=0.046 Score=64.66 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCCCCCCcccccC--------CcEEEECCCCCchHHHHHHHH
Q 008329 318 TDGVDDDTVELEK--------SNILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 318 ~~~ld~is~~i~~--------~~vLL~GPPGTGKTtLAraLA 351 (570)
..+++++++.+.. .-++|+||+|+||||+.|.++
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHH
Confidence 3577888888765 345599999999999999994
No 305
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.26 E-value=0.027 Score=54.21 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.-++|+||+|+|||||+++|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566999999999999999998764
No 306
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.25 E-value=0.16 Score=55.62 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=26.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
..++|+|++|+||||++..||..+ +.....+++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 467799999999999999999766 566655555
No 307
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.23 E-value=0.023 Score=60.76 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=26.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.-++|.||+|+|||+||..||+.++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 34679999999999999999999987665543
No 308
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.23 E-value=0.02 Score=61.57 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=27.3
Q ss_pred CCCcccccCCcEE-EECCCCCchHHHHHHHHHHhCCc
Q 008329 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 322 d~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg~~ 357 (570)
+++ +.+.++..+ |.||+|+|||||++.|++.....
T Consensus 149 d~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 149 NAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp HHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 444 455556555 99999999999999999998544
No 309
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.20 E-value=0.045 Score=50.81 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=19.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.++++.+|+|+|||.++..++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999998877654
No 310
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.18 E-value=0.025 Score=58.51 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.3
Q ss_pred CcccccC--C-cEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 324 DTVELEK--S-NILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 324 is~~i~~--~-~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
++..+.+ + .+.|+||+|+|||||+++|++.+...
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3444444 3 55699999999999999999988643
No 311
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.17 E-value=0.06 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=20.9
Q ss_pred ccCCc-EEEECCCCCchHHHHHHHHHH
Q 008329 328 LEKSN-ILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 328 i~~~~-vLL~GPPGTGKTtLAraLA~~ 353 (570)
++++. ++|+||||+|||++|..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444 459999999999999999865
No 312
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.11 E-value=0.019 Score=63.24 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
++++++ .+.++.++ |+||+|+|||||+++|+..+
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577788 77777777 99999999999999999865
No 313
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.06 E-value=0.082 Score=56.65 Aligned_cols=34 Identities=44% Similarity=0.598 Sum_probs=27.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s 364 (570)
..++++|++|+||||++..+|..+ +..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 568899999999999999999776 4556556554
No 314
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.05 E-value=0.025 Score=52.29 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCCCCcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 320 ~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
+++++++..+...+++.|++|+|||+|.+.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345566666667899999999999999999986
No 315
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.04 E-value=0.0078 Score=62.76 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=25.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC--CcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg--~~fv~i~ 362 (570)
..++|.||+|+||||+++++++.+. ...+.++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 3666999999999999999999874 2344444
No 316
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.98 E-value=0.079 Score=56.77 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCcccccCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 323 ~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
++++. ++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45555 44556699999999999999999876 455555554
No 317
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.92 E-value=0.046 Score=59.42 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=20.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 567899999999999999987654
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.89 E-value=0.035 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.1
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46799999999999999999876
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.87 E-value=0.059 Score=54.76 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=30.0
Q ss_pred CcccccCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecc
Q 008329 324 DTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADAT 364 (570)
Q Consensus 324 is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s 364 (570)
+++...+.-+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4555554455699999999999999999776 5566655543
No 320
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.85 E-value=0.069 Score=58.49 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=26.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC---CcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN---VPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg---~~fv~i~~s~ 365 (570)
.-++|+|.||+||||+|+.+++.++ .+...++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3567999999999999999999873 3444444433
No 321
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.73 E-value=0.041 Score=53.70 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
-+.+.|++|||||++|+.+|+.++.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 45599999999999999999999988853
No 322
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.72 E-value=0.095 Score=58.49 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=19.8
Q ss_pred cEEEECCCCCchHHHHH-HHHHHh--CCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAK-TLARYV--NVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAr-aLA~~l--g~~fv~i~ 362 (570)
-.|+.||||||||+++- +|+..+ +..+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 46799999999997654 444433 44444333
No 323
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.61 E-value=0.12 Score=55.12 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=23.7
Q ss_pred cccccC-CcEEEECCCCCchHHHHHHHHHHh
Q 008329 325 TVELEK-SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 325 s~~i~~-~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.+.+ ..++|.||+|+|||+|++.|++.+
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 334433 466799999999999999999876
No 324
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.58 E-value=0.048 Score=61.27 Aligned_cols=36 Identities=28% Similarity=0.583 Sum_probs=30.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeecccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATTL 366 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~l 366 (570)
..|+|+|.+|+||||+|++|++.+ +.+++.++...+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 357799999999999999999998 889888775443
No 325
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.55 E-value=0.085 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.||+|+||||+|+.|++.+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 345999999999999999998875
No 326
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.48 E-value=0.045 Score=54.02 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=24.7
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVI 360 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~ 360 (570)
+-|.|+||+||||+|+.|++.++.+.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 4499999999999999999999887653
No 327
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.023 Score=61.37 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=22.6
Q ss_pred cccCC-cEEEECCCCCchHHHHHHHHHHh
Q 008329 327 ELEKS-NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 327 ~i~~~-~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.++ -+.|.||+|+|||||+++|++.+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33334 45599999999999999999876
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.31 E-value=0.043 Score=54.34 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=21.5
Q ss_pred ccCCc-EEEECCCCCchHHHHHHHHHHh
Q 008329 328 LEKSN-ILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 328 i~~~~-vLL~GPPGTGKTtLAraLA~~l 354 (570)
++++. ++|+||+|+||||+++.++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444 4599999999999999998654
No 329
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.31 E-value=0.032 Score=62.60 Aligned_cols=30 Identities=33% Similarity=0.595 Sum_probs=27.3
Q ss_pred CCCCCCCcccccCCcEE-EECCCCCchHHHH
Q 008329 318 TDGVDDDTVELEKSNIL-LMGPTGSGKTLLA 347 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vL-L~GPPGTGKTtLA 347 (570)
..++++++++++++.++ |+||+|+|||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 34799999999999887 9999999999996
No 330
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.29 E-value=0.79 Score=42.89 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=18.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.++++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 57899999999999877655533
No 331
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.25 E-value=0.015 Score=60.59 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=31.3
Q ss_pred CCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 320 ~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.++++++.+.++-+.|+||+|+|||||.++|+..++
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888999888666999999999999999988775
No 332
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.22 E-value=0.025 Score=63.46 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=29.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHH
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA 351 (570)
.++++++++++++.++ |+||+|+|||||++++.
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3689999999999888 99999999999997653
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.21 E-value=0.041 Score=53.02 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.7
Q ss_pred cEEEECCCCCchHHHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-+.|.||+|+|||||+++|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4559999999999999999986
No 334
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.21 E-value=0.021 Score=61.32 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.4
Q ss_pred CCCCcccccCCcE---EEECCCCCchHHHHHHHHHH
Q 008329 321 VDDDTVELEKSNI---LLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 321 ld~is~~i~~~~v---LL~GPPGTGKTtLAraLA~~ 353 (570)
++++++.+.++.+ .|+||+|+|||||.++|++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 6677778877875 59999999999999999875
No 335
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.21 E-value=0.05 Score=55.55 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.-+.|+||+|+||||+++.+|..+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 345599999999999999999887
No 336
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.15 E-value=0.029 Score=62.67 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=29.3
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
++++++ .+.++.++ |+||+|+|||||+++|+..+
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 577788 77777777 99999999999999999765
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.98 E-value=0.049 Score=57.02 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
..++++||+|+||||+++++++.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999876
No 338
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.98 E-value=0.032 Score=65.69 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=30.9
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~ 352 (570)
.+++++++.+.++.++ |+||+|+|||||.++|++
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999998877 999999999999999984
No 339
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.89 E-value=0.91 Score=50.44 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=27.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh-------CCcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV-------NVPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l-------g~~fv~i~~s~ 365 (570)
.|+|+.|.+|+|||++++.|...+ ...++.+|...
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 799999999999999999876543 23477777663
No 340
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.87 E-value=0.1 Score=52.73 Aligned_cols=41 Identities=29% Similarity=0.354 Sum_probs=29.8
Q ss_pred CCCcccccCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 322 d~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
+++++. ++..+.++|++|+||||++..+|..+ +..+..+++
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 445666 44455599999999999999999776 455554444
No 341
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=92.86 E-value=0.082 Score=57.52 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=33.5
Q ss_pred cCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 279 VIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 279 ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
++|.+..++.|...+... .-..+-++++||+|+|||+||+.+++
T Consensus 126 ~vGR~~~l~~L~~~L~~~------------------------------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKL------------------------------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCHHHHHHHHHHHTTS------------------------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred ecccHHHHHHHHHHHhcc------------------------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 799999999998887310 00114567999999999999998863
No 342
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.86 E-value=0.035 Score=61.05 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=27.8
Q ss_pred CCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 321 ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
++.+++.+.++.++ |.||+|+|||||+++|+...
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455566777777 99999999999999999876
No 343
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.85 E-value=0.052 Score=54.85 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=23.3
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC---CcEEEeecccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN---VPFVIADATTL 366 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg---~~fv~i~~s~l 366 (570)
-+.|.||+|+||||+|+.+++.++ ..+..++..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 355999999999999999999775 33444555443
No 344
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.69 E-value=0.04 Score=58.84 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.+++.||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999884
No 345
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.62 E-value=0.07 Score=48.42 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=24.1
Q ss_pred cccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 325 TVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 325 s~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.++..++-.+|+||+|+|||++..+|.-.+
T Consensus 18 ~i~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 444555566799999999999999998665
No 346
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.61 E-value=0.52 Score=45.96 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=22.0
Q ss_pred EEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 334 LLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 334 LL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
+++||.|+||||.+..++..+ +...+.+.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 389999999999987776554 55665554
No 347
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.58 E-value=0.04 Score=61.58 Aligned_cols=34 Identities=32% Similarity=0.592 Sum_probs=27.5
Q ss_pred CCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 321 ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
++.+++.+.++.++ |.||+|+|||||+++|+..+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44445556777777 99999999999999999876
No 348
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.54 E-value=0.56 Score=45.15 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=23.8
Q ss_pred cEEEECCCCCchH-HHHHHHHHHh--CCcEEEeec
Q 008329 332 NILLMGPTGSGKT-LLAKTLARYV--NVPFVIADA 363 (570)
Q Consensus 332 ~vLL~GPPGTGKT-tLAraLA~~l--g~~fv~i~~ 363 (570)
-.+++||.|+||| .|.+++.+.. +..++.+..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 3449999999999 8888887654 555555553
No 349
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.53 E-value=0.074 Score=53.97 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=26.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHHHh----CCcEEEeecc
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARYV----NVPFVIADAT 364 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~l----g~~fv~i~~s 364 (570)
+..++|+||+|+||||++..+|..+ |..+..+++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3456699999999999999999765 4455555543
No 350
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.50 E-value=0.036 Score=61.05 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=27.5
Q ss_pred CCCcccccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 322 DDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 322 d~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+.+++++.++.++ |.||+|+|||||+++|+..+
T Consensus 285 ~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 285 VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445667778777 99999999999999999876
No 351
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.38 E-value=0.062 Score=53.76 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.|+||+|+|||||.++|++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57799999999999999999876
No 352
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.31 E-value=0.055 Score=56.39 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=26.6
Q ss_pred CCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 322 DDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 322 d~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+++++++..+-.+|+||+|+||||+..+|+-.+
T Consensus 15 ~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 15 KNVDIEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 445667777767799999999999999998554
No 353
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.28 E-value=0.093 Score=57.40 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=26.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC--CcEEEeecc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN--VPFVIADAT 364 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg--~~fv~i~~s 364 (570)
..+++.||+|+||||++++++..+. ...+.+...
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 4688999999999999999998873 234555443
No 354
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.052 Score=60.69 Aligned_cols=35 Identities=37% Similarity=0.544 Sum_probs=29.5
Q ss_pred CCCCCcccccCC-----cE-EEECCCCCchHHHHHHHHHHh
Q 008329 320 GVDDDTVELEKS-----NI-LLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 320 ~ld~is~~i~~~-----~v-LL~GPPGTGKTtLAraLA~~l 354 (570)
.++++++++..+ .+ .|.||+|+|||||+++|+..+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 467788888776 33 499999999999999999876
No 355
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.23 E-value=0.055 Score=51.65 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=27.2
Q ss_pred CCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 321 VDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 321 ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
+.+.-+++....+||.|++|+||||+|.++.+.
T Consensus 7 lHas~v~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 7 WHANFLVIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EESEEEEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 344456667789999999999999999999874
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.22 E-value=0.021 Score=61.00 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.|.||+|+|||||.++|++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 45599999999999999999753
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.20 E-value=0.074 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhC
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.|.||+|+||||+++.|+..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 44999999999999999999875
No 358
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.18 E-value=0.037 Score=51.62 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=23.2
Q ss_pred CcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 324 DTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 324 is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
+++......+++.|++|+|||+|.+.+..
T Consensus 19 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 19 LGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred hhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34445556899999999999999998863
No 359
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.16 E-value=0.051 Score=60.12 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=27.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC----CcEEEeecccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN----VPFVIADATTL 366 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg----~~fv~i~~s~l 366 (570)
.+.|+|++|+||||++++|++.++ ..+..++..++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 456999999999999999999884 34544665443
No 360
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.14 E-value=0.18 Score=47.84 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=24.7
Q ss_pred ccCCc-EEEECCCCCchHHHHHHHHHH----hCCcEEEeec
Q 008329 328 LEKSN-ILLMGPTGSGKTLLAKTLARY----VNVPFVIADA 363 (570)
Q Consensus 328 i~~~~-vLL~GPPGTGKTtLAraLA~~----lg~~fv~i~~ 363 (570)
++++. +++.|+||+|||++|..+|.. .+.+.+.++.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 44454 459999999999999877633 2555555543
No 361
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.12 E-value=0.08 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-.++|.|++|+|||||.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 367899999999999999998753
No 362
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.12 E-value=0.11 Score=48.71 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..+++.|++|+||||++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999988753
No 363
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.11 E-value=0.028 Score=66.19 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCCCCCcccccCCcEE-EECCCCCchHHHHHHHHHHhC
Q 008329 319 DGVDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 319 ~~ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~lg 355 (570)
.+++++++.+..+.++ |.||+|+|||||.++|+..+.
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4689999999999877 999999999999999998763
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.06 E-value=0.1 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred CCcEEEECCCCCchHHHHHHHHH
Q 008329 330 KSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
...+++.|++|+|||+|.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999875
No 365
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.96 E-value=0.077 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.6
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.|.|++|+|||||.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57799999999999999999754
No 366
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.92 E-value=0.039 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.-|+|.|++|+||||+++.|++.+.
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3566999999999999999999883
No 367
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.89 E-value=0.096 Score=58.09 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=28.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC----CcEEEeeccc
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN----VPFVIADATT 365 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg----~~fv~i~~s~ 365 (570)
.++|.|++|+||||+|++|++.++ .+++.++...
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 467999999999999999999885 6777776544
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.85 E-value=0.051 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.+.|+|++|+|||||++.|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 466999999999999999998873
No 369
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.81 E-value=0.15 Score=50.33 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
-++++.|+||+|||++|-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468899999999999999988765 666654444
No 370
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.80 E-value=0.14 Score=55.81 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 280 IGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 280 iGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
+|.+..++.|...+...-. ...+.+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~-----------------------------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD-----------------------------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT-----------------------------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC-----------------------------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5999999999888841100 0013456999999999999999996
No 371
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.80 E-value=0.092 Score=54.94 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=28.6
Q ss_pred CCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 321 VDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 321 ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
++++++++.++-.+|+||+|+|||++.++|+...
T Consensus 17 ~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 17 LAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 5677888887766699999999999999998644
No 372
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.56 E-value=0.12 Score=56.67 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=23.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
..++|.|.+|+||||+|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999999974
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.56 E-value=0.1 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=21.5
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFV 359 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv 359 (570)
+.|.|+.|+||||+++.|++. +..+.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred EEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 449999999999999999987 44443
No 374
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.54 E-value=0.17 Score=45.98 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
..++++|++|+|||++.+.+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998643
No 375
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.50 E-value=0.14 Score=52.72 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.2
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.+.|+||+||||+++.++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45599999999999999998765
No 376
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.43 E-value=0.23 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.2
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
.-.++.|+||||||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 3456999999999999987765
No 377
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.42 E-value=0.11 Score=50.21 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-++|.|++|+||||+++.+++.+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45599999999999999999887
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.39 E-value=0.095 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=22.0
Q ss_pred cEEEECCCCCchHHHHHHHHHHhC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
-+.|.|++|+||||+++.+++.+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999984
No 379
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.34 E-value=0.11 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.9
Q ss_pred cEEEECCCCCchHHHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 380
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.29 E-value=0.12 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.-+.|.|++|+||||++..+++.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 346699999999999999999876
No 381
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.26 E-value=0.12 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.-+.|.|++|+||||+++.+.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 356799999999999999998765
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.24 E-value=0.12 Score=48.21 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
..++++|++|+|||+|++.+....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999998754
No 383
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.16 E-value=0.12 Score=45.43 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 384
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.11 E-value=0.92 Score=44.31 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=16.1
Q ss_pred CcEEEECCCCCchHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKT 349 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAra 349 (570)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5789999999999987543
No 385
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.10 E-value=0.22 Score=51.75 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.5
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
...|+++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45799999999999999999998654 44454444
No 386
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.03 E-value=0.12 Score=49.08 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=25.8
Q ss_pred EEEECCCCCchHHHHHHHHHHhCCcEEEeecc
Q 008329 333 ILLMGPTGSGKTLLAKTLARYVNVPFVIADAT 364 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~lg~~fv~i~~s 364 (570)
+|++|++|+|||++|+.++.. +.+.+.+.-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999977 7776665543
No 387
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.00 E-value=0.1 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=17.7
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-++|.|++|+||||+++.+++.+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999887
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.99 E-value=0.13 Score=48.92 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=25.5
Q ss_pred cccccCCcEEEECCCCCchHHHHHHHHHHhCC
Q 008329 325 TVELEKSNILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 325 s~~i~~~~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
.++..++-.+|+||+|+|||++..+|.-.++.
T Consensus 18 ~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEECCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 44555566779999999999999999876643
No 389
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.97 E-value=0.12 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999754
No 390
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.94 E-value=0.085 Score=53.42 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=19.8
Q ss_pred CCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 320 ~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
+++++++.+ +|.||+|+|||||.+.|+..
T Consensus 13 ~l~~~~~~I-----~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 13 VKKGFEFTL-----MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -----CEEE-----EEEEETTSSHHHHHHHHHC-
T ss_pred EEcCCCEEE-----EEECCCCCCHHHHHHHHhCC
Confidence 455555544 89999999999999998753
No 391
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.93 E-value=0.12 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999754
No 392
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.90 E-value=0.21 Score=55.60 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+..++.||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999877665443
No 393
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.89 E-value=0.12 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 394
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.89 E-value=0.47 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..|+|+|++|+|||+|.++|.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 47889999999999999999753
No 395
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.84 E-value=0.12 Score=45.43 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 396
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.80 E-value=0.41 Score=49.37 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=24.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEee
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIAD 362 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~ 362 (570)
..+.|+|+||+||||++..++..+ +..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 356799999999999999998775 44444443
No 397
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.76 E-value=0.13 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
..++|.|++|+|||+|.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999985
No 398
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.76 E-value=0.069 Score=55.99 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=29.1
Q ss_pred CCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 318 TDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
...+++++......-+.|+||+|+|||||+++|+....
T Consensus 203 ~~gl~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 203 QDGLKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TBTHHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CcCHHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 34456666666655667999999999999999997553
No 399
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.65 E-value=0.11 Score=47.42 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.3
Q ss_pred cEEEECCCCCchHHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~ 352 (570)
.++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999975
No 400
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.62 E-value=0.08 Score=49.07 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=21.5
Q ss_pred ccccCC-cEEEECCCCCchHHHHHHHHHH
Q 008329 326 VELEKS-NILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 326 ~~i~~~-~vLL~GPPGTGKTtLAraLA~~ 353 (570)
+.+.++ .+.|+|++|+|||||.++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444444 4669999999999999988643
No 401
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=90.50 E-value=0.93 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=17.9
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
..+++.||+|+|||+++..+..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999997666643
No 402
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.47 E-value=0.15 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.9
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-.+++.|++|+|||+|.+.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 478999999999999999997643
No 403
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.35 E-value=0.14 Score=45.31 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.6
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4689999999999999999864
No 404
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.32 E-value=2.4 Score=42.62 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.3
Q ss_pred CcEEEECCCCCchHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA 351 (570)
.++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998765444
No 405
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.31 E-value=0.12 Score=55.09 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 319 ~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+++++++.+ .|+||+|+|||||++.++...
T Consensus 25 ~vl~~vsf~I-----~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 25 SVKRGFEFTL-----MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TCC-CCCEEE-----EEECCTTSSHHHHHHHHTTCC
T ss_pred EEecCCCEEE-----EEECCCCCcHHHHHHHHhCCC
Confidence 4567777664 899999999999999998654
No 406
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.21 E-value=0.16 Score=45.21 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 407
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.20 E-value=0.16 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999854
No 408
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=90.18 E-value=0.22 Score=48.34 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhCCc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVNVP 357 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg~~ 357 (570)
.-++|.|++|+||||+++.+++.++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 346699999999999999999999764
No 409
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.14 E-value=0.16 Score=45.97 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
..++|.|++|+|||+|.+.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4788999999999999999986
No 410
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.12 E-value=0.16 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+++.|++|+|||+|.+.+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998754
No 411
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.08 E-value=0.15 Score=54.65 Aligned_cols=25 Identities=40% Similarity=0.741 Sum_probs=22.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
..++|+|.||+||||+++.+++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999998874
No 412
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.08 E-value=0.15 Score=50.16 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.8
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-++|.|++|+||||+++.+++.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999877
No 413
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.07 E-value=0.15 Score=44.79 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999743
No 414
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.05 E-value=0.17 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.0
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+.+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999985
No 415
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.03 E-value=0.17 Score=45.49 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999853
No 416
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.98 E-value=0.16 Score=44.60 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.8
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3688999999999999999975
No 417
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.96 E-value=0.14 Score=52.06 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 323 DDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 323 ~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+++++.++-.+|+||+|+|||++..+|.-.+
T Consensus 17 ~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 34566666656699999999999999998655
No 418
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.93 E-value=0.17 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999763
No 419
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.90 E-value=0.17 Score=44.71 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=18.5
Q ss_pred cEEEECCCCCchHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA 351 (570)
.+++.|++|+|||+|++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999986
No 420
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.77 E-value=0.19 Score=44.18 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred cEEEECCCCCchHHHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+++.|++|+|||+|.+.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999754
No 421
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.63 E-value=0.33 Score=45.53 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
..+++.|.+|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998775
No 422
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.57 E-value=0.16 Score=44.75 Aligned_cols=20 Identities=40% Similarity=0.806 Sum_probs=18.5
Q ss_pred cEEEECCCCCchHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA 351 (570)
.+++.|++|+|||+|.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999885
No 423
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.53 E-value=0.2 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999999754
No 424
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.53 E-value=0.13 Score=54.98 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCCcccccCCcEE-EECCCCCchHHHHHHHHHHh----CCcEEEeec
Q 008329 321 VDDDTVELEKSNIL-LMGPTGSGKTLLAKTLARYV----NVPFVIADA 363 (570)
Q Consensus 321 ld~is~~i~~~~vL-L~GPPGTGKTtLAraLA~~l----g~~fv~i~~ 363 (570)
||.+...+.++.++ +.|+||+|||+++..+|..+ +.++..++.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45555455666555 99999999999999998654 446655553
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.44 E-value=0.18 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.9
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-+.|.|++|+||||.++.+++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999887
No 426
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.43 E-value=0.2 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 427
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.43 E-value=0.2 Score=44.14 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
..+++.|++|+|||+|.+.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.42 E-value=0.2 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57899999999999999999853
No 429
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.40 E-value=0.2 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 430
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.37 E-value=0.2 Score=54.46 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=21.3
Q ss_pred cCCc-EEEECCCCCchHHHHHHHHHHh
Q 008329 329 EKSN-ILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 329 ~~~~-vLL~GPPGTGKTtLAraLA~~l 354 (570)
.++. ++|.||+|+|||||++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3344 4599999999999999999765
No 431
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.37 E-value=0.2 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 432
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.36 E-value=0.21 Score=48.46 Aligned_cols=30 Identities=40% Similarity=0.444 Sum_probs=25.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCCcEEEee
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNVPFVIAD 362 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~~fv~i~ 362 (570)
.+-|+|..||||||+++.+++ +|.+++..|
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 456999999999999999998 888876544
No 433
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.30 E-value=0.19 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+++.|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999865
No 434
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.30 E-value=0.19 Score=57.75 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 318 TDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 318 ~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
..+++++++. ..-++|+||+|+||||+.+.++...
T Consensus 566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4567788887 4456699999999999999998754
No 435
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.28 E-value=0.19 Score=44.57 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999753
No 436
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.28 E-value=0.21 Score=48.79 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHhCC
Q 008329 332 NILLMGPTGSGKTLLAKTLARYVNV 356 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~lg~ 356 (570)
-+.|.|++|+||||+++.+++.+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4559999999999999999987643
No 437
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.25 E-value=0.19 Score=44.72 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.5
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|++.+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999863
No 438
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.16 E-value=0.21 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999999753
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.14 E-value=0.22 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.++++|++|+|||+|.+.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47889999999999999999864
No 440
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.10 E-value=0.35 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
+..++.||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999887766543
No 441
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.09 E-value=0.21 Score=44.51 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.7
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4688999999999999999874
No 442
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.04 E-value=0.22 Score=44.92 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-.+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999887654
No 443
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.03 E-value=0.19 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..++|+|++|+|||+|.++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 444
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.01 E-value=0.22 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 445
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.96 E-value=0.61 Score=48.16 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=20.4
Q ss_pred cEEEECCCCCchHHHHHHHHHHh
Q 008329 332 NILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.+.|.|+||+|||||.+++...+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999764
No 446
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.90 E-value=0.23 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999854
No 447
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.78 E-value=0.21 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999864
No 448
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.77 E-value=0.16 Score=51.59 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=29.1
Q ss_pred CCCCcccccCCcE-EEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 321 VDDDTVELEKSNI-LLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 321 ld~is~~i~~~~v-LL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
||.+.-.+.++.+ ++.|+||+|||++|..+|..+ +.+...++.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 4444434555654 499999999999999998554 345555543
No 449
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.73 E-value=0.39 Score=46.19 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=25.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh--CCcEEEeec
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV--NVPFVIADA 363 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l--g~~fv~i~~ 363 (570)
..+++.|.+|+||||++..+|..+ +.....++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456699999999999999999765 555555553
No 450
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.70 E-value=0.23 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCcEEEECCCCCchHHHHHHHHHH
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.-.++|.|++|+|||+|++.+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999887653
No 451
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.69 E-value=0.22 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999754
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.68 E-value=0.16 Score=55.97 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=20.9
Q ss_pred CcEE-EECCCCCchHHHHHHHHHHh
Q 008329 331 SNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+.++ |+||+|+|||||.++|+..+
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4455 99999999999999999865
No 453
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.66 E-value=0.25 Score=44.25 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 454
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.64 E-value=0.17 Score=52.16 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.7
Q ss_pred CCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 320 GVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 320 ~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.+++.-+++....++|.|++|+|||++|.++.+.
T Consensus 134 ~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 134 SLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4566667777789999999999999999999874
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.62 E-value=0.19 Score=56.19 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.6
Q ss_pred ccCCcEE-EECCCCCchHHHHHHHHHHh
Q 008329 328 LEKSNIL-LMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 328 i~~~~vL-L~GPPGTGKTtLAraLA~~l 354 (570)
+.++.++ |.||+|+|||||.++|+..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3445566 99999999999999999866
No 456
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.61 E-value=2 Score=47.99 Aligned_cols=21 Identities=52% Similarity=0.686 Sum_probs=17.6
Q ss_pred CCcEEEECCCCCchHHHHHHH
Q 008329 330 KSNILLMGPTGSGKTLLAKTL 350 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraL 350 (570)
..++++.+|+|+|||+.+...
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHH
Confidence 368999999999999988433
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=88.57 E-value=0.16 Score=51.96 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=22.6
Q ss_pred ccccCCcEEEECCCCCchHHHHHHHHHHh
Q 008329 326 VELEKSNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 326 ~~i~~~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
++..++-.+|+||+|+|||++..||.-.+
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44455666799999999999999986443
No 458
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=88.56 E-value=0.21 Score=44.99 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.2
Q ss_pred cEEEECCCCCchHHHHHHHHH
Q 008329 332 NILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 332 ~vLL~GPPGTGKTtLAraLA~ 352 (570)
.+++.|++|+|||+|.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999875
No 459
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.53 E-value=0.23 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
..+++.|++|+|||+|.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999874
No 460
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.42 E-value=0.26 Score=44.73 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 461
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.38 E-value=0.26 Score=44.83 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.++++|++|+|||+|.+.+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999999754
No 462
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.32 E-value=0.36 Score=56.39 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=34.4
Q ss_pred ccCChHHHHHHHHHHHHhhhhhhhhhhhcccccCCCCCCCCCCCCCCcccccCCcEEEECCCCCchHHHHHHHHHH
Q 008329 278 FVIGQERAKKVLSVAVYNHYMRIYNESSQKRSAGESSSCTTDGVDDDTVELEKSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 278 ~ViGqd~ak~~L~~aV~~~~~r~~~~~~~~~~~~~~~~~~~~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.++|.++.++.|.+.+...- -..+-+.|+|+.|+|||+||+.++..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~------------------------------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN------------------------------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT------------------------------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhcc------------------------------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 37999999999998884100 01134669999999999999988754
No 463
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.31 E-value=0.26 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+++.|++|+|||+|.+.+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999753
No 464
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.30 E-value=0.24 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+++.|++|+|||+|.+.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999998754
No 465
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.29 E-value=0.43 Score=45.27 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=23.9
Q ss_pred EEEECCCCCchHHHHHHHHHHh---CCcEEEe
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV---NVPFVIA 361 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l---g~~fv~i 361 (570)
+.|.|+-|+||||.++.+++.+ |.+++..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4589999999999999999887 5565543
No 466
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.27 E-value=0.27 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998753
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.17 E-value=0.27 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999764
No 468
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.16 E-value=0.37 Score=53.10 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=27.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh---CCcEEEeeccc
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV---NVPFVIADATT 365 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~s~ 365 (570)
..++|+|++|+||||+|+.+++.+ +.++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 356799999999999999999876 34565555433
No 469
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.05 E-value=0.28 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47889999999999999999764
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.87 E-value=0.29 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.6
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 471
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.80 E-value=0.31 Score=46.67 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=23.0
Q ss_pred EEEECCCCCchHHHHHHHHHHh--CCcEEE
Q 008329 333 ILLMGPTGSGKTLLAKTLARYV--NVPFVI 360 (570)
Q Consensus 333 vLL~GPPGTGKTtLAraLA~~l--g~~fv~ 360 (570)
+.|.|+.|+||||.++.+++.+ +.+++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 5699999999999999999988 444443
No 472
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.79 E-value=0.27 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
..+++.|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5789999999999999999974
No 473
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.77 E-value=0.55 Score=46.06 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEECCCCCchHH-HHHHHHHHh--CCcEEEee
Q 008329 333 ILLMGPTGSGKTL-LAKTLARYV--NVPFVIAD 362 (570)
Q Consensus 333 vLL~GPPGTGKTt-LAraLA~~l--g~~fv~i~ 362 (570)
.+++||-|+|||| |.+.+-+.. +...+.++
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 3489999999999 555554333 44444443
No 474
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.76 E-value=3.8 Score=45.85 Aligned_cols=18 Identities=56% Similarity=0.732 Sum_probs=16.3
Q ss_pred CcEEEECCCCCchHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAK 348 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAr 348 (570)
.++++.+|+|+|||+.+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 689999999999999884
No 475
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.74 E-value=0.3 Score=44.56 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47889999999999999999753
No 476
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.72 E-value=0.3 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999874
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.68 E-value=0.25 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
..+.|.|+||+|||||.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999754
No 478
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.66 E-value=0.45 Score=49.98 Aligned_cols=35 Identities=37% Similarity=0.539 Sum_probs=26.6
Q ss_pred cCCcEEEECCCCCchHHHHHHHHHHh---CCcEEEeec
Q 008329 329 EKSNILLMGPTGSGKTLLAKTLARYV---NVPFVIADA 363 (570)
Q Consensus 329 ~~~~vLL~GPPGTGKTtLAraLA~~l---g~~fv~i~~ 363 (570)
...|+++.|++|+|||++++.+...+ +..++.+|.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 45799999999999999987765443 556666654
No 479
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.64 E-value=0.31 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 47889999999999999999753
No 480
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.64 E-value=0.31 Score=44.54 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 481
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.64 E-value=0.3 Score=44.66 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47899999999999999988753
No 482
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=87.64 E-value=0.23 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 483
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=87.61 E-value=0.17 Score=59.53 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=28.9
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHHH
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKTL 350 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAraL 350 (570)
.+++++++++.+.++ ++|++|+|||||++.+
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 689999999999888 9999999999999985
No 484
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.60 E-value=0.31 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999999753
No 485
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.58 E-value=0.28 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.1
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
-.+++.|++|+|||+|++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 378999999999999999998654
No 486
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=87.57 E-value=0.1 Score=60.60 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.0
Q ss_pred CCCCCcccccCCcEE-EECCCCCchHHHHHH-HHHH
Q 008329 320 GVDDDTVELEKSNIL-LMGPTGSGKTLLAKT-LARY 353 (570)
Q Consensus 320 ~ld~is~~i~~~~vL-L~GPPGTGKTtLAra-LA~~ 353 (570)
.|++++++++.+.++ ++|++|+|||||++. ++..
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 589999999999888 999999999999996 5533
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.57 E-value=0.28 Score=44.92 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999754
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.52 E-value=0.29 Score=44.89 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998753
No 489
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.49 E-value=0.21 Score=45.52 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCcEEEECCCCCchHHHHHHHHHH
Q 008329 330 KSNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 330 ~~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
.-.+++.|++|+|||+|.+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998644
No 490
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.36 E-value=0.29 Score=44.45 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4789999999999999999976
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.32 E-value=0.32 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.++++|++|+|||+|.+++...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999753
No 492
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.32 E-value=0.2 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.0
Q ss_pred CcEEEECCCCCchHHHHHHHHHHhC
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
.-+.|.||+|+|||||.++|+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3455999999999999999998653
No 493
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.26 E-value=0.13 Score=50.44 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=22.4
Q ss_pred ccCCcEEEECCCCCchHHHHHHHHHHhC
Q 008329 328 LEKSNILLMGPTGSGKTLLAKTLARYVN 355 (570)
Q Consensus 328 i~~~~vLL~GPPGTGKTtLAraLA~~lg 355 (570)
+.+.-+.|+||+|+||||+.++|+..+.
T Consensus 25 ~~~~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 25 LDELVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EcCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 3333345899999999999999999873
No 494
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.24 E-value=0.3 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|.+.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999753
No 495
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=87.22 E-value=0.3 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred CcEEEECCCCCchHHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLARY 353 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~ 353 (570)
-.+++.|++|+|||+|++.+...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47899999999999999999864
No 496
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.14 E-value=0.31 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred CcEEEECCCCCchHHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~ 352 (570)
-.+++.|++|+|||+|.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999874
No 497
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.09 E-value=0.33 Score=49.05 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.8
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
.-+.|.||+|+|||||.++|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 345599999999999999999 55
No 498
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=87.05 E-value=0.34 Score=49.81 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCCCCCcccccCCcEEEECCCCCchHHHHHHHHH
Q 008329 319 DGVDDDTVELEKSNILLMGPTGSGKTLLAKTLAR 352 (570)
Q Consensus 319 ~~ld~is~~i~~~~vLL~GPPGTGKTtLAraLA~ 352 (570)
.+++++++.++ .++++|++|+|||++.+++..
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHT
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhC
Confidence 35677777776 788999999999999999987
No 499
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.03 E-value=0.22 Score=44.72 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.0
Q ss_pred CcEEEECCCCCchHHHHHHHH
Q 008329 331 SNILLMGPTGSGKTLLAKTLA 351 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA 351 (570)
..+++.|++|+|||+|.+.+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999998875
No 500
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=86.90 E-value=1.2 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.5
Q ss_pred CcEEEECCCCCchHHHHHHHHHHh
Q 008329 331 SNILLMGPTGSGKTLLAKTLARYV 354 (570)
Q Consensus 331 ~~vLL~GPPGTGKTtLAraLA~~l 354 (570)
...+|.|++|+|||+|+..|++..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHH
Confidence 578999999999999999998764
Done!