BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008330
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 122/306 (39%), Gaps = 43/306 (14%)
Query: 41 TNSRWIVDENGHRVKLACVNWVSHLE-PVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPL 99
T+ R I+D N V++A +NW V GL + + ++ +G+N +RL +
Sbjct: 8 TSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPY-- 65
Query: 100 YLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVI 159
++D L T+ S + + + G+ S ++ +VA G + +I
Sbjct: 66 ---SDDILKPGTMPNSINFYQMNQDLQGLTS----------LQVMDKIVAYAGQIGLRII 112
Query: 160 LDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219
LD H +P C S + + WI L +A + G VVG L NE P
Sbjct: 113 LDRH--RPD-CSGQS---ALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPHDP 166
Query: 220 K-----QNVKDWYRYMQLGAEAVHAANPEVLVILSGLN--------FDKDLSFVRNQAVN 266
DW + AV + NP +L+ + G+ + +L V
Sbjct: 167 ACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVV 226
Query: 267 LTFTGKLVFEAHWYGFTDG-QAWVDGN--PNQVCGRVVDNVMRLSGFLLEQG-WPLFVSE 322
L +LV+ AH Y + G Q W PN + G N G+L Q P+++ E
Sbjct: 227 LNVPNRLVYSAHDYATSVGPQTWFSDPTFPNNMPGIWNKNW----GYLFNQNIAPVWLGE 282
Query: 323 FGADLR 328
FG L+
Sbjct: 283 FGTTLQ 288
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 121/306 (39%), Gaps = 43/306 (14%)
Query: 41 TNSRWIVDENGHRVKLACVNWVSHLE-PVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPL 99
T+ R I+D N V++A +NW V GL + + ++ +G+N +RL +
Sbjct: 8 TSGREILDANNVPVRIAGINWFGFETCNYVVHGLWSRDYRSMLDQIKSLGYNTIRLPY-- 65
Query: 100 YLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVI 159
++D L T+ S + + + G+ S ++ +VA G + +I
Sbjct: 66 ---SDDILKPGTMPNSINFYQMNQDLQGLTS----------LQVMDKIVAYAGQIGLRII 112
Query: 160 LDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219
LD H +P C S + + WI L +A + G VVG L NE P
Sbjct: 113 LDRH--RPD-CSGQS---ALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPHDP 166
Query: 220 K-----QNVKDWYRYMQLGAEAVHAANPEVLVILSGLN--------FDKDLSFVRNQAVN 266
DW + AV + NP +L+ + G+ + +L V
Sbjct: 167 ACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYPVV 226
Query: 267 LTFTGKLVFEAHWYGFT-DGQAWVDGN--PNQVCGRVVDNVMRLSGFLLEQG-WPLFVSE 322
L +LV+ AH Y + Q W PN + G N G+L Q P+++ E
Sbjct: 227 LNVPNRLVYSAHDYATSVYPQTWFSDPTFPNNMPGIWNKNW----GYLFNQNIAPVWLGE 282
Query: 323 FGADLR 328
FG L+
Sbjct: 283 FGTTLQ 288
>pdb|4DM1|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM1|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 59/308 (19%)
Query: 54 VKLACVNWVSHLEP-VVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV 112
+ L VNW P V GL K+ + + ++ +GFN +RL + +V
Sbjct: 28 IHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESV 77
Query: 113 RQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCS 172
+ Q +G+ S NP + L ++ + ++ G+ + V+LD H C+
Sbjct: 78 KPGTQPIGI------DYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCT 127
Query: 173 NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR--------------- 217
+ + + D F+ + +I ++A F NV+G L+NE
Sbjct: 128 HIEPLWYTED--FSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGA 185
Query: 218 --GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----------------DLS 258
G DW + +A+ P L+ + G F +L
Sbjct: 186 TWGMGNPATDWNLAAERIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLM 245
Query: 259 FVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFL-LEQGWP 317
V++ VNL KLV+ H YG G + D G++ LE G+
Sbjct: 246 AVKDYPVNLP-KNKLVYSPHVYGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELGYS 304
Query: 318 LFVSEFGA 325
+ + EFG
Sbjct: 305 VVIGEFGG 312
>pdb|2ZUM|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|2ZUN|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 59/308 (19%)
Query: 54 VKLACVNWVSHLEP-VVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV 112
+ L VNW P V GL K+ + + ++ +GFN +RL + +V
Sbjct: 61 IHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESV 110
Query: 113 RQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCS 172
+ Q +G+ S NP + L ++ + ++ G+ + V+LD H C+
Sbjct: 111 KPGTQPIGI------DYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCT 160
Query: 173 NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR--------------- 217
+ + + D F+ + +I ++A F NV+G L+NE
Sbjct: 161 HIEPLWYTED--FSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGA 218
Query: 218 --GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----------------DLS 258
G DW + +A+ P L+ + G F +L
Sbjct: 219 TWGMGNPATDWNLAAERIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLM 278
Query: 259 FVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFL-LEQGWP 317
V++ VNL KLV+ H YG G + D G++ LE G+
Sbjct: 279 AVKDYPVNLP-KNKLVYSPHVYGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELGYS 337
Query: 318 LFVSEFGA 325
+ + EFG
Sbjct: 338 VVIGEFGG 345
>pdb|3AXX|A Chain A, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|B Chain B, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
pdb|3AXX|C Chain C, Functional Analysis Of Hyperthermophilic Endocellulase
From The Archaeon Pyrococcus Horikoshii
Length = 458
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 59/308 (19%)
Query: 54 VKLACVNWVSHLEP-VVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV 112
+ L VNW P V GL K+ + + ++ +GFN +RL + +V
Sbjct: 61 IHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESV 110
Query: 113 RQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCS 172
+ Q +G+ S NP + L ++ + ++ G+ + V+LD H C+
Sbjct: 111 KPGTQPIGI------DYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCT 160
Query: 173 NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR--------------- 217
+ + + D F+ + +I ++A F NV+G L+NE
Sbjct: 161 HIEPLWYTED--FSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGA 218
Query: 218 --GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----------------DLS 258
G DW + +A+ P L+ + G F +L
Sbjct: 219 TWGMGNPATDWNLAAERIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLM 278
Query: 259 FVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFL-LEQGWP 317
V++ VNL KLV+ H YG G + D G++ LE G+
Sbjct: 279 AVKDYPVNLP-RNKLVYSPHVYGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELGYS 337
Query: 318 LFVSEFGA 325
+ + EFG
Sbjct: 338 VVIGEFGG 345
>pdb|3QHM|A Chain A, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|B Chain B, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHM|C Chain C, Crystal Analysis Of The Complex Structure,
E342a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 99/263 (37%), Gaps = 58/263 (22%)
Query: 54 VKLACVNWVSHLEP-VVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV 112
+ L VNW P V GL K+ + + ++ +GFN +RL + +V
Sbjct: 61 IHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESV 110
Query: 113 RQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCS 172
+ Q +G+ S NP + L ++ + ++ G+ + V+LD H C+
Sbjct: 111 KPGTQPIGI------DYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCT 160
Query: 173 NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR--------------- 217
+ + + D F+ + +I ++A F NV+G L+NE
Sbjct: 161 HIEPLWYTED--FSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGA 218
Query: 218 --GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----------------DLS 258
G DW + +A+ P L+ + G F +L
Sbjct: 219 TWGMGNPATDWNLAAERIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLM 278
Query: 259 FVRNQAVNLTFTGKLVFEAHWYG 281
V++ VNL KLV+ H YG
Sbjct: 279 AVKDYPVNLP-RNKLVYSPHVYG 300
>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 59/308 (19%)
Query: 54 VKLACVNWVSHLEP-VVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV 112
+ L VNW P V GL K+ + + ++ +GFN +RL + +V
Sbjct: 61 IHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESV 110
Query: 113 RQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCS 172
+ Q +G+ S NP + L ++ + ++ G+ + V+LD H C+
Sbjct: 111 KPGTQPIGI------DYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCT 160
Query: 173 NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR--------------- 217
+ + + D F+ + +I ++A F NV+G L+NE
Sbjct: 161 HIEPLWYTED--FSEEDFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGA 218
Query: 218 --GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----------------DLS 258
G DW + +A+ P L+ + G F +L
Sbjct: 219 TWGMGNPATDWNLAAERIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLM 278
Query: 259 FVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFL-LEQGWP 317
V++ VNL KLV+ H +G G + D G++ LE G+
Sbjct: 279 AVKDYPVNLP-RNKLVYSPHVFGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELGYS 337
Query: 318 LFVSEFGA 325
+ + EFG
Sbjct: 338 VVIGEFGG 345
>pdb|3QHN|A Chain A, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|B Chain B, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
pdb|3QHN|C Chain C, Crystal Analysis Of The Complex Structure,
E201a-Cellotetraose, Of Endocellulase From Pyrococcus
Horikoshii
Length = 458
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 113/308 (36%), Gaps = 59/308 (19%)
Query: 54 VKLACVNWVSHLEP-VVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV 112
+ L VNW P V GL K+ + + ++ +GFN +RL + +V
Sbjct: 61 IHLFGVNWFGFETPNHVVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESV 110
Query: 113 RQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCS 172
+ Q +G+ S NP + L ++ + ++ G+ + V+LD H C+
Sbjct: 111 KPGTQPIGI------DYSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCT 160
Query: 173 NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR--------------- 217
+ + + D F+ + +I ++A F NV+G L+N
Sbjct: 161 HIEPLWYTED--FSEEDFINTWIEVAKRFGKYWNVIGADLKNAPHSVTSPPAAYTDGTGA 218
Query: 218 --GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----------------DLS 258
G DW + +A+ P L+ + G F +L
Sbjct: 219 TWGMGNPATDWNLAAERIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLM 278
Query: 259 FVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFL-LEQGWP 317
V++ VNL KLV+ H YG G + D G++ LE G+
Sbjct: 279 AVKDYPVNLP-RNKLVYSPHVYGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELGYS 337
Query: 318 LFVSEFGA 325
+ + EFG
Sbjct: 338 VVIGEFGG 345
>pdb|4DM2|A Chain A, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|B Chain B, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
pdb|4DM2|C Chain C, Contribution Of Disulfide Bond Toward Thermostability In
Hyperthermostable Endocellulase
Length = 377
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/292 (20%), Positives = 108/292 (36%), Gaps = 58/292 (19%)
Query: 69 VAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI 128
V GL K+ + + ++ +GFN +RL + +V+ Q +G+
Sbjct: 44 VVHGLWKRNWEDMLLQIKSLGFNAIRL----------PFCTESVKPGTQPIGI------D 87
Query: 129 QSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPD 188
S NP + L ++ + ++ G+ + V+LD H C++ + + D F+ +
Sbjct: 88 YSKNPDLRGLDSLQIMEKIIKKAGDLGIFVLLDYHRI----GCTHIEPLWYTED--FSEE 141
Query: 189 LWIKGLTKMATIFNGVRNVVGMSLRNELR-----------------GPKQNVKDWYRYMQ 231
+I ++A F NV+G L+NE G DW +
Sbjct: 142 DFINTWIEVAKRFGKYWNVIGADLKNEPHSVTSPPAAYTDGTGATWGMGNPATDWNLAAE 201
Query: 232 LGAEAVHAANPEVLVILSGLNFDK-----------------DLSFVRNQAVNLTFTGKLV 274
+A+ P L+ + G F +L V++ VNL KLV
Sbjct: 202 RIGKAILKVAPHWLIFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVNLP-KNKLV 260
Query: 275 FEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFL-LEQGWPLFVSEFGA 325
+ H YG G + D G++ LE G+ + + EFG
Sbjct: 261 YSPHVYGPDVYNQPYFGPAKGFPDNLPDIWYHHFGYVKLELGYSVVIGEFGG 312
>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
In Complex With Cellotetraose
Length = 359
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 196 KMATIFNGVRNVVGMSLRNE--LRGPKQNVKDWYRYMQLGAEAV---HAANPEVLVILSG 250
+++ +NG+ +V + NE + + + W + + EA+ A NP+ + +++G
Sbjct: 170 RVSERYNGINSVAFYEIFNEPTVFNGRLGIATWAEWKAINEEAITIIQAHNPKAIALVAG 229
Query: 251 LNFDKDLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGF 310
N+ DL + A N + + +H Y P +V N R GF
Sbjct: 230 FNWAYDL---KEAAANPIDRQNIAYVSHPY------------PQKVGAPYQANWERDFGF 274
Query: 311 LLEQGWPLFVSEFG 324
++ +P+F +E G
Sbjct: 275 XADK-YPVFATEIG 287
>pdb|3PZT|A Chain A, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZT|B Chain B, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZU|A Chain A, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZU|B Chain B, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|A Chain A, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|B Chain B, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|C Chain C, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|D Chain D, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
Length = 327
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 35/197 (17%)
Query: 136 VDLPLIK-AFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGL 194
+D P +K + V + + VI+D HI G N + N ++F
Sbjct: 98 IDNPSVKNKVKEAVEAAKELGIYVIIDWHILNDG----NPNQNKEKAKEFF--------- 144
Query: 195 TKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 254
+M++++ NV+ + NE G +D Y + + +P+ ++I+ +
Sbjct: 145 KEMSSLYGNTPNVI-YEIANEPNGDVNWKRDIKPYAEEVISVIRKNDPDNIIIVGTGTWS 203
Query: 255 KDLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQ 314
+D V + A + +++ H+Y T GQ D + + L +
Sbjct: 204 QD---VNDAADDQLKDANVMYALHFYAGTHGQFLRD----------------KANYALSK 244
Query: 315 GWPLFVSEFG-ADLRGN 330
G P+FV+E+G +D GN
Sbjct: 245 GAPIFVTEWGTSDASGN 261
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 443 WSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSKADNGTTV 502
W + P SL+ F +Q K V I + ST ++ +D L NGT
Sbjct: 295 WGFRPR---SLRVKIFNIQVKEVTVQDSTTTIANNLTSTVQVFTDDDYQLPYVVGNGTEG 351
Query: 503 CLDVDSSN--TIVTNTCKCLSRDKTCDPASQ 531
CL T+ L+RD T +P +
Sbjct: 352 CLPAFPPQVFTLPQYGYATLNRDNTENPTER 382
>pdb|2R7A|A Chain A, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|B Chain B, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|C Chain C, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2R7A|D Chain D, Crystal Structure Of A Periplasmic Heme Binding Protein
From Shigella Dysenteriae
pdb|2RG7|A Chain A, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|B Chain B, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|C Chain C, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
pdb|2RG7|D Chain D, Apo- Crystal Structure Of A Periplasmic Heme Binding
Protein From Shigella Dysenteriae
Length = 256
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 221 QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQA 264
+NV +Y AE++ AANPEV+V+ S + D D++ +R+ A
Sbjct: 172 ENVATHQQYKSYSAESLIAANPEVIVVTSQM-VDGDINRLRSIA 214
>pdb|1BQC|A Chain A, Beta-Mannanase From Thermomonospora Fusca
pdb|2MAN|A Chain A, Mannotriose Complex Of Thermomonospora Fusca
Beta-Mannanase
pdb|3MAN|A Chain A, Mannohexaose Complex Of Thermomonospora Fusca
Beta-mannanase
Length = 302
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 30/159 (18%)
Query: 188 DLWIKGLTKMATIFNGVRNVVGMSLRNELRG-PKQNVKDWYRYMQLGAEAVHAANPEVLV 246
D WI+ + ++ G + V +++ NE G V W + + AA E +
Sbjct: 105 DYWIE----LKSVLQGEEDYVLINIGNEPYGNDSATVAAWATDTSAAIQRLRAAGFEHTL 160
Query: 247 ILSGLNFDKD-LSFVRNQAVNLTF---TGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVD 302
++ N+ +D + +RN A + TG VF H YG V
Sbjct: 161 VVDAPNWGQDWTNTMRNNADQVYASDPTGNTVFSIHMYG------------------VYS 202
Query: 303 NVMRLSGFL---LEQGWPLFVSEFGADLRGNNVNDNRYL 338
++ +L + G PL + EFG D N +++ +
Sbjct: 203 QASTITSYLEHFVNAGLPLIIGEFGHDHSDGNPDEDTIM 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,534,529
Number of Sequences: 62578
Number of extensions: 749802
Number of successful extensions: 1618
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 17
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)