Query 008330
Match_columns 570
No_of_seqs 273 out of 1624
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 22:27:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 1.2E-36 2.5E-41 309.5 23.3 268 47-358 1-278 (281)
2 COG2730 BglC Endoglucanase [Ca 99.9 1.5E-24 3.2E-29 233.4 16.2 258 47-328 38-326 (407)
3 PRK10150 beta-D-glucuronidase; 99.5 4.7E-12 1E-16 143.4 28.7 277 39-381 278-579 (604)
4 PF02836 Glyco_hydro_2_C: Glyc 99.5 2.9E-12 6.4E-17 132.7 22.0 157 40-251 2-159 (298)
5 PF03198 Glyco_hydro_72: Gluca 99.3 2.4E-10 5.1E-15 116.5 21.5 163 34-244 6-176 (314)
6 TIGR03356 BGL beta-galactosida 99.2 3.3E-09 7.2E-14 115.2 22.7 137 77-246 55-212 (427)
7 PF02449 Glyco_hydro_42: Beta- 99.1 3.4E-09 7.4E-14 113.3 20.9 119 70-218 4-140 (374)
8 PF07745 Glyco_hydro_53: Glyco 99.1 4E-09 8.7E-14 110.0 20.4 225 78-356 26-295 (332)
9 PRK10340 ebgA cryptic beta-D-g 99.1 4E-09 8.8E-14 125.5 21.3 147 50-250 330-476 (1021)
10 PRK09525 lacZ beta-D-galactosi 99.1 5.2E-09 1.1E-13 124.4 20.2 141 50-251 346-490 (1027)
11 smart00633 Glyco_10 Glycosyl h 99.0 3.9E-08 8.5E-13 99.7 19.5 210 141-383 15-247 (254)
12 COG3867 Arabinogalactan endo-1 98.9 3.1E-07 6.8E-12 92.0 23.7 234 78-356 65-341 (403)
13 PF13204 DUF4038: Protein of u 98.9 4.8E-09 1E-13 108.2 9.7 178 42-250 1-186 (289)
14 COG3934 Endo-beta-mannanase [C 98.8 3.3E-08 7.2E-13 104.5 10.6 262 77-383 27-308 (587)
15 COG2723 BglB Beta-glucosidase/ 98.4 3.1E-06 6.8E-11 91.1 12.5 137 78-245 61-219 (460)
16 smart00458 RICIN Ricin-type be 98.3 1.1E-06 2.3E-11 77.2 6.4 95 416-517 3-106 (117)
17 PRK09852 cryptic 6-phospho-bet 98.3 1.5E-06 3.2E-11 95.6 8.9 110 77-217 72-182 (474)
18 PF12876 Cellulase-like: Sugar 98.3 1.6E-06 3.5E-11 73.5 6.8 78 197-280 1-88 (88)
19 COG3250 LacZ Beta-galactosidas 98.3 1.4E-05 3E-10 92.5 15.4 140 50-252 296-435 (808)
20 PRK15014 6-phospho-beta-glucos 98.2 4.5E-06 9.8E-11 91.9 9.3 110 77-217 70-180 (477)
21 cd00161 RICIN Ricin-type beta- 98.2 7.2E-06 1.6E-10 71.8 8.6 93 419-517 9-114 (124)
22 PF01301 Glyco_hydro_35: Glyco 98.2 1.6E-05 3.5E-10 83.3 12.4 213 50-327 5-235 (319)
23 PF00331 Glyco_hydro_10: Glyco 98.2 4.4E-05 9.6E-10 80.1 15.2 217 141-383 58-309 (320)
24 PF01229 Glyco_hydro_39: Glyco 98.1 3.2E-05 7E-10 85.7 14.5 245 141-399 83-362 (486)
25 PRK09593 arb 6-phospho-beta-gl 98.1 3.7E-05 8.1E-10 84.8 13.2 109 78-217 75-184 (478)
26 PLN03059 beta-galactosidase; P 98.1 0.00012 2.5E-09 84.3 17.1 172 37-249 28-221 (840)
27 PRK13511 6-phospho-beta-galact 98.0 3.4E-05 7.5E-10 85.0 11.6 108 77-218 55-163 (469)
28 TIGR01233 lacG 6-phospho-beta- 98.0 5.6E-05 1.2E-09 83.2 12.1 136 77-246 54-211 (467)
29 PRK09589 celA 6-phospho-beta-g 97.9 4.8E-05 1E-09 83.9 9.2 109 78-217 69-178 (476)
30 PLN02998 beta-glucosidase 97.9 4.5E-05 9.8E-10 84.4 9.0 109 78-218 84-193 (497)
31 PF00232 Glyco_hydro_1: Glycos 97.9 1.6E-05 3.4E-10 87.5 5.3 139 78-248 60-219 (455)
32 PF00652 Ricin_B_lectin: Ricin 97.9 2.2E-05 4.9E-10 69.3 5.4 93 419-517 11-116 (124)
33 PLN02814 beta-glucosidase 97.8 4.8E-05 1E-09 84.4 9.0 108 78-217 79-187 (504)
34 PLN02849 beta-glucosidase 97.8 6.4E-05 1.4E-09 83.3 8.9 109 78-218 81-190 (503)
35 COG1874 LacA Beta-galactosidas 97.3 0.00085 1.8E-08 76.1 9.6 131 50-218 11-163 (673)
36 COG5309 Exo-beta-1,3-glucanase 97.2 0.072 1.6E-06 53.6 20.0 177 143-354 88-278 (305)
37 PF14200 RicinB_lectin_2: Rici 97.0 0.0022 4.7E-08 55.8 7.4 76 440-517 2-93 (105)
38 PF14587 Glyco_hydr_30_2: O-Gl 96.9 0.12 2.5E-06 55.2 20.6 104 146-249 108-225 (384)
39 PF11790 Glyco_hydro_cc: Glyco 96.9 0.013 2.8E-07 59.0 12.5 134 193-350 55-203 (239)
40 COG3693 XynA Beta-1,4-xylanase 96.9 0.094 2E-06 54.3 18.5 164 141-330 81-265 (345)
41 PF14488 DUF4434: Domain of un 96.8 0.021 4.5E-07 54.3 12.7 140 76-251 20-162 (166)
42 smart00458 RICIN Ricin-type be 96.7 0.0021 4.5E-08 56.1 4.8 70 414-484 41-116 (117)
43 cd00161 RICIN Ricin-type beta- 96.7 0.0028 6.1E-08 55.1 5.1 65 419-484 51-124 (124)
44 PF00652 Ricin_B_lectin: Ricin 96.6 0.0033 7.1E-08 55.3 5.0 70 412-482 47-124 (124)
45 PF14200 RicinB_lectin_2: Rici 96.5 0.0031 6.7E-08 54.8 4.0 74 410-484 15-104 (105)
46 PLN02361 alpha-amylase 96.0 0.021 4.6E-07 61.7 8.4 91 49-164 8-101 (401)
47 KOG0626 Beta-glucosidase, lact 95.9 0.033 7.2E-07 61.2 9.2 109 78-217 93-203 (524)
48 PLN02784 alpha-amylase 95.8 0.035 7.6E-07 64.5 9.4 94 48-165 498-594 (894)
49 PRK12313 glycogen branching en 95.7 0.23 5E-06 57.1 15.5 68 79-165 174-246 (633)
50 KOG2230 Predicted beta-mannosi 95.7 0.064 1.4E-06 58.8 10.1 173 49-284 332-525 (867)
51 COG5520 O-Glycosyl hydrolase [ 95.6 0.43 9.3E-06 50.0 15.4 187 151-361 111-313 (433)
52 PLN00196 alpha-amylase; Provis 95.5 0.056 1.2E-06 59.0 9.3 92 51-165 23-118 (428)
53 PRK05402 glycogen branching en 95.3 0.39 8.4E-06 56.2 15.7 67 80-165 270-341 (726)
54 TIGR01515 branching_enzym alph 95.1 0.42 9.2E-06 54.7 14.9 68 79-165 160-232 (613)
55 KOG0496 Beta-galactosidase [Ca 95.1 0.25 5.4E-06 55.6 12.4 142 36-217 17-176 (649)
56 PRK12568 glycogen branching en 95.0 0.62 1.3E-05 54.1 15.9 66 79-162 273-339 (730)
57 PRK14706 glycogen branching en 94.3 1.2 2.5E-05 51.4 16.1 66 79-162 171-237 (639)
58 PRK14705 glycogen branching en 94.2 0.84 1.8E-05 55.8 15.2 70 79-166 769-842 (1224)
59 smart00642 Aamy Alpha-amylase 94.2 0.15 3.3E-06 48.4 7.2 67 77-162 20-90 (166)
60 PLN02447 1,4-alpha-glucan-bran 94.1 1.5 3.2E-05 51.2 16.2 66 79-162 254-320 (758)
61 PRK10785 maltodextrin glucosid 93.8 1.4 3.1E-05 50.4 15.4 68 78-165 181-252 (598)
62 PF02055 Glyco_hydro_30: O-Gly 93.8 3.6 7.9E-05 45.9 18.1 195 142-358 157-380 (496)
63 KOG3736 Polypeptide N-acetylga 93.7 0.1 2.2E-06 58.5 5.9 102 417-533 461-571 (578)
64 TIGR02104 pulA_typeI pullulana 93.5 1.4 3E-05 50.5 14.8 154 80-250 168-349 (605)
65 PF14871 GHL6: Hypothetical gl 93.4 1.2 2.6E-05 40.6 11.3 107 78-211 2-131 (132)
66 PRK09441 cytoplasmic alpha-amy 93.2 0.34 7.3E-06 53.8 8.9 100 51-165 2-107 (479)
67 PLN02960 alpha-amylase 93.2 3.5 7.6E-05 48.6 17.1 70 79-166 420-493 (897)
68 TIGR02402 trehalose_TreZ malto 93.1 1.8 4E-05 48.8 14.7 146 78-250 113-281 (542)
69 PF00128 Alpha-amylase: Alpha 93.1 0.16 3.5E-06 51.7 5.8 66 78-162 6-72 (316)
70 PF13200 DUF4015: Putative gly 92.9 14 0.0003 38.9 21.7 254 77-359 14-314 (316)
71 KOG2233 Alpha-N-acetylglucosam 92.5 0.68 1.5E-05 50.3 9.4 169 78-251 80-283 (666)
72 PF02638 DUF187: Glycosyl hydr 91.3 5.5 0.00012 41.7 14.7 159 76-251 19-230 (311)
73 COG1649 Uncharacterized protei 90.8 11 0.00024 40.9 16.6 160 76-251 64-273 (418)
74 PF03662 Glyco_hydro_79n: Glyc 90.3 0.35 7.7E-06 50.6 4.7 188 141-347 108-317 (319)
75 PLN02877 alpha-amylase/limit d 90.1 6.8 0.00015 47.0 15.4 37 127-165 453-492 (970)
76 TIGR02102 pullulan_Gpos pullul 90.1 7.3 0.00016 47.6 15.9 99 141-250 554-672 (1111)
77 COG0296 GlgB 1,4-alpha-glucan 89.6 1.1 2.4E-05 51.0 8.2 71 78-166 167-241 (628)
78 KOG3738 Predicted polypeptide 88.2 0.27 5.9E-06 52.1 2.0 92 421-517 442-542 (559)
79 TIGR02403 trehalose_treC alpha 87.9 1.3 2.9E-05 50.0 7.4 69 77-165 28-101 (543)
80 PRK10933 trehalose-6-phosphate 87.8 1.4 3.1E-05 49.8 7.6 69 78-165 35-107 (551)
81 COG1523 PulA Type II secretory 87.8 1.1 2.4E-05 51.8 6.6 80 80-166 204-292 (697)
82 TIGR02456 treS_nterm trehalose 86.9 1.7 3.6E-05 49.1 7.5 70 77-165 29-102 (539)
83 TIGR02100 glgX_debranch glycog 86.0 1.3 2.8E-05 51.4 6.1 79 81-165 189-271 (688)
84 PRK09505 malS alpha-amylase; R 85.3 2.1 4.5E-05 49.6 7.3 75 78-162 232-312 (683)
85 PF01120 Alpha_L_fucos: Alpha- 85.3 3 6.6E-05 44.3 8.0 137 78-249 93-244 (346)
86 PRK03705 glycogen debranching 84.9 1.7 3.8E-05 50.1 6.4 79 81-165 184-268 (658)
87 PRK09997 hydroxypyruvate isome 83.3 14 0.00031 37.1 11.7 153 76-250 15-179 (258)
88 TIGR02103 pullul_strch alpha-1 80.6 15 0.00033 44.0 12.0 111 127-250 391-526 (898)
89 KOG3736 Polypeptide N-acetylga 80.4 1.9 4.1E-05 48.6 4.3 64 421-486 507-574 (578)
90 TIGR02401 trehalose_TreY malto 78.8 5.9 0.00013 46.7 7.8 72 76-166 16-92 (825)
91 PRK14511 maltooligosyl trehalo 78.7 5.4 0.00012 47.3 7.5 71 76-165 20-95 (879)
92 COG0276 HemH Protoheme ferro-l 77.1 51 0.0011 34.7 13.4 154 75-250 101-265 (320)
93 cd06565 GH20_GcnA-like Glycosy 76.9 65 0.0014 33.5 14.3 145 77-244 18-181 (301)
94 PLN00197 beta-amylase; Provisi 76.4 16 0.00034 40.9 9.7 59 78-165 129-189 (573)
95 PLN02905 beta-amylase 76.3 13 0.00029 42.1 9.1 130 78-249 288-431 (702)
96 PRK14510 putative bifunctional 75.4 5.8 0.00013 49.2 6.8 75 80-166 191-274 (1221)
97 PLN02705 beta-amylase 74.9 21 0.00045 40.4 10.2 131 78-249 270-413 (681)
98 TIGR03234 OH-pyruv-isom hydrox 74.8 53 0.0011 32.7 12.7 154 76-251 14-179 (254)
99 cd02742 GH20_hexosaminidase Be 73.1 1.2E+02 0.0026 31.4 19.1 151 77-243 17-186 (303)
100 PLN02803 beta-amylase 72.8 17 0.00038 40.4 9.0 59 78-165 109-169 (548)
101 PRK14507 putative bifunctional 72.1 10 0.00022 48.2 7.8 69 78-165 760-833 (1693)
102 COG0366 AmyA Glycosidases [Car 72.1 9.1 0.0002 42.1 6.9 68 76-162 29-97 (505)
103 PRK09989 hypothetical protein; 71.6 78 0.0017 31.7 13.1 153 76-249 15-178 (258)
104 PF02156 Glyco_hydro_26: Glyco 71.5 12 0.00027 39.1 7.3 61 140-208 135-200 (311)
105 TIGR02631 xylA_Arthro xylose i 70.8 97 0.0021 33.5 14.1 183 54-250 11-216 (382)
106 COG3623 SgaU Putative L-xylulo 69.6 42 0.00092 33.7 9.9 157 139-326 93-261 (287)
107 PLN02161 beta-amylase 68.1 77 0.0017 35.3 12.5 130 78-248 119-260 (531)
108 PF07488 Glyco_hydro_67M: Glyc 67.5 1.5E+02 0.0033 31.0 13.7 168 78-286 59-242 (328)
109 COG3589 Uncharacterized conser 65.3 13 0.00029 39.0 5.8 26 139-164 46-71 (360)
110 cd00257 Fascin Fascin-like dom 64.1 30 0.00065 30.2 7.3 59 451-512 4-64 (119)
111 cd06564 GH20_DspB_LnbB-like Gl 64.1 1.5E+02 0.0033 31.1 13.8 160 77-245 18-197 (326)
112 PLN02801 beta-amylase 63.9 56 0.0012 36.3 10.5 60 77-165 38-99 (517)
113 cd06563 GH20_chitobiase-like T 63.0 2E+02 0.0043 30.6 14.6 168 76-245 18-222 (357)
114 PF03498 CDtoxinA: Cytolethal 62.9 13 0.00029 34.7 4.9 74 454-535 59-142 (150)
115 PRK13397 3-deoxy-7-phosphohept 62.8 38 0.00082 34.4 8.5 128 78-251 31-160 (250)
116 PRK09856 fructoselysine 3-epim 62.8 1.4E+02 0.0031 29.9 13.0 158 75-250 12-182 (275)
117 COG5016 Pyruvate/oxaloacetate 60.9 40 0.00086 36.5 8.4 64 54-162 82-145 (472)
118 TIGR00542 hxl6Piso_put hexulos 60.7 71 0.0015 32.4 10.4 60 78-164 96-155 (279)
119 TIGR02455 TreS_stutzeri trehal 59.9 18 0.00038 41.5 6.0 71 79-162 77-150 (688)
120 TIGR03234 OH-pyruv-isom hydrox 59.8 98 0.0021 30.8 11.1 60 78-164 86-145 (254)
121 PF01373 Glyco_hydro_14: Glyco 59.3 18 0.00038 39.2 5.6 129 77-248 17-150 (402)
122 PF07071 DUF1341: Protein of u 58.9 20 0.00043 35.1 5.4 44 77-158 136-180 (218)
123 cd00257 Fascin Fascin-like dom 57.8 90 0.002 27.2 9.3 67 441-511 34-103 (119)
124 COG1306 Uncharacterized conser 56.2 12 0.00025 38.7 3.5 69 77-164 78-146 (400)
125 COG3280 TreY Maltooligosyl tre 54.6 17 0.00037 42.0 4.8 69 76-162 19-88 (889)
126 PF05089 NAGLU: Alpha-N-acetyl 54.4 42 0.00091 35.5 7.4 159 77-250 20-218 (333)
127 cd06562 GH20_HexA_HexB-like Be 54.3 2.9E+02 0.0063 29.3 14.0 153 77-246 19-207 (348)
128 TIGR01531 glyc_debranch glycog 54.1 28 0.0006 43.4 6.7 97 50-165 108-211 (1464)
129 PRK13209 L-xylulose 5-phosphat 53.1 1.1E+02 0.0024 30.9 10.4 60 78-164 101-160 (283)
130 PRK09249 coproporphyrinogen II 52.8 1.3E+02 0.0028 33.2 11.4 83 141-241 186-279 (453)
131 PRK12677 xylose isomerase; Pro 52.4 2.8E+02 0.006 30.0 13.6 177 55-249 11-214 (384)
132 PF12891 Glyco_hydro_44: Glyco 51.1 48 0.001 33.4 6.9 56 194-249 110-178 (239)
133 TIGR03581 EF_0839 conserved hy 50.9 26 0.00056 34.7 4.8 44 76-157 135-179 (236)
134 cd00019 AP2Ec AP endonuclease 50.8 1.5E+02 0.0032 30.0 10.8 93 78-215 87-180 (279)
135 PRK04302 triosephosphate isome 50.3 2.6E+02 0.0056 27.5 12.5 79 142-250 101-180 (223)
136 TIGR01212 radical SAM protein, 50.1 1.7E+02 0.0036 30.4 11.2 89 141-247 162-258 (302)
137 KOG2499 Beta-N-acetylhexosamin 48.9 3.9E+02 0.0084 29.9 13.6 102 142-243 250-382 (542)
138 PF00232 Glyco_hydro_1: Glycos 48.7 29 0.00063 38.3 5.5 63 315-380 355-430 (455)
139 smart00518 AP2Ec AP endonuclea 48.1 2.6E+02 0.0057 27.9 12.1 155 77-252 11-176 (273)
140 PF02879 PGM_PMM_II: Phosphogl 48.0 56 0.0012 27.9 6.1 85 140-251 3-93 (104)
141 PRK13209 L-xylulose 5-phosphat 47.9 2.5E+02 0.0054 28.3 12.0 180 76-282 21-217 (283)
142 PF09370 TIM-br_sig_trns: TIM- 47.5 1.4E+02 0.0031 30.5 9.7 123 76-251 95-222 (268)
143 PF05913 DUF871: Bacterial pro 47.1 30 0.00065 37.0 5.1 27 139-165 44-70 (357)
144 KOG0470 1,4-alpha-glucan branc 46.0 23 0.00051 40.9 4.2 72 78-162 257-331 (757)
145 TIGR00109 hemH ferrochelatase. 45.8 3.8E+02 0.0082 28.1 14.3 154 74-250 102-268 (322)
146 PLN02449 ferrochelatase 45.4 4.4E+02 0.0095 29.6 13.8 154 75-250 190-360 (485)
147 PLN02849 beta-glucosidase 45.2 67 0.0015 36.1 7.7 67 314-383 383-462 (503)
148 TIGR01370 cysRS possible cyste 44.5 4E+02 0.0087 28.0 14.1 148 188-351 143-299 (315)
149 COG3622 Hfi Hydroxypyruvate is 44.2 2.5E+02 0.0055 28.4 10.6 145 76-245 15-173 (260)
150 PRK13347 coproporphyrinogen II 43.9 2.1E+02 0.0046 31.5 11.3 84 141-242 187-281 (453)
151 PRK08599 coproporphyrinogen II 43.9 2.1E+02 0.0046 30.5 11.1 83 141-241 135-229 (377)
152 PRK08208 coproporphyrinogen II 43.7 3.6E+02 0.0077 29.5 13.0 118 79-241 141-264 (430)
153 KOG0471 Alpha-amylase [Carbohy 43.6 37 0.00079 38.5 5.3 69 78-165 42-114 (545)
154 PF02310 B12-binding: B12 bind 42.6 1.1E+02 0.0023 26.5 7.3 41 203-252 50-90 (121)
155 TIGR00539 hemN_rel putative ox 42.4 4.1E+02 0.009 28.1 13.0 59 141-217 135-194 (360)
156 PRK05660 HemN family oxidoredu 42.3 4E+02 0.0087 28.5 12.9 59 141-217 142-201 (378)
157 COG1082 IolE Sugar phosphate i 42.3 2.2E+02 0.0048 28.2 10.5 158 75-251 14-179 (274)
158 TIGR00542 hxl6Piso_put hexulos 42.2 2.3E+02 0.0051 28.5 10.7 180 76-282 16-212 (279)
159 PF14701 hDGE_amylase: glucano 41.9 67 0.0014 35.2 6.8 71 77-163 23-98 (423)
160 PF00167 FGF: Fibroblast growt 41.2 76 0.0017 28.1 6.1 51 456-507 9-60 (122)
161 PF05706 CDKN3: Cyclin-depende 40.6 99 0.0021 29.5 6.8 83 73-208 55-137 (168)
162 cd07937 DRE_TIM_PC_TC_5S Pyruv 40.5 1.9E+02 0.0041 29.6 9.6 47 78-163 93-139 (275)
163 PRK07379 coproporphyrinogen II 40.3 4.1E+02 0.009 28.7 12.7 60 141-218 150-210 (400)
164 TIGR02171 Fb_sc_TIGR02171 Fibr 39.5 1.1E+02 0.0024 36.5 8.4 66 140-211 806-872 (912)
165 cd06568 GH20_SpHex_like A subg 38.6 4.9E+02 0.011 27.4 14.6 150 77-243 19-190 (329)
166 PRK13511 6-phospho-beta-galact 38.6 1.1E+02 0.0024 34.0 8.0 64 317-383 370-447 (469)
167 PRK13210 putative L-xylulose 5 38.5 3.8E+02 0.0083 26.8 11.6 127 77-215 17-156 (284)
168 TIGR01233 lacG 6-phospho-beta- 38.2 99 0.0021 34.4 7.6 67 314-383 364-445 (467)
169 PRK06294 coproporphyrinogen II 37.9 5.1E+02 0.011 27.6 12.9 94 79-217 103-197 (370)
170 KOG3737 Predicted polypeptide 37.7 27 0.00058 37.5 2.9 97 412-517 482-586 (603)
171 PF01261 AP_endonuc_2: Xylose 37.7 93 0.002 29.3 6.6 112 78-235 73-184 (213)
172 PF00728 Glyco_hydro_20: Glyco 37.5 56 0.0012 34.3 5.4 157 77-250 19-217 (351)
173 PRK14042 pyruvate carboxylase 37.4 2E+02 0.0043 33.1 9.9 37 53-95 79-115 (596)
174 cd06570 GH20_chitobiase-like_1 37.1 3.1E+02 0.0068 28.7 10.8 69 76-163 18-89 (311)
175 cd02068 radical_SAM_B12_BD B12 37.0 88 0.0019 27.6 5.8 40 203-252 38-77 (127)
176 PRK09852 cryptic 6-phospho-bet 36.7 1.1E+02 0.0024 34.1 7.7 67 314-383 364-445 (474)
177 cd00019 AP2Ec AP endonuclease 36.5 3.9E+02 0.0084 26.9 11.3 158 76-252 10-179 (279)
178 PF10566 Glyco_hydro_97: Glyco 36.3 74 0.0016 32.8 5.8 27 137-165 132-158 (273)
179 PLN02814 beta-glucosidase 35.7 1E+02 0.0022 34.7 7.2 65 316-383 388-462 (504)
180 TIGR00538 hemN oxygen-independ 35.6 3.3E+02 0.0072 29.9 11.3 93 141-254 186-289 (455)
181 PLN02998 beta-glucosidase 35.6 1.1E+02 0.0025 34.2 7.6 67 314-383 390-467 (497)
182 cd00058 FGF Acidic and basic f 35.0 1.1E+02 0.0024 27.4 6.1 63 457-520 8-74 (123)
183 cd06543 GH18_PF-ChiA-like PF-C 34.7 5.4E+02 0.012 26.7 18.5 92 142-249 54-145 (294)
184 PRK09593 arb 6-phospho-beta-gl 34.5 1.4E+02 0.003 33.3 8.0 66 314-382 367-448 (478)
185 smart00812 Alpha_L_fucos Alpha 33.6 1.7E+02 0.0038 31.6 8.4 132 78-244 83-226 (384)
186 PRK07535 methyltetrahydrofolat 33.5 2.5E+02 0.0054 28.6 9.1 58 141-211 137-197 (261)
187 PRK09589 celA 6-phospho-beta-g 33.4 1.1E+02 0.0024 34.1 7.0 67 314-383 366-448 (476)
188 PRK12595 bifunctional 3-deoxy- 33.3 2.4E+02 0.0052 30.2 9.3 128 78-251 134-263 (360)
189 cd02950 TxlA TRX-like protein 33.0 1E+02 0.0023 28.0 5.8 48 149-213 14-61 (142)
190 COG1867 TRM1 N2,N2-dimethylgua 32.5 80 0.0017 33.9 5.4 27 74-100 332-358 (380)
191 KOG3738 Predicted polypeptide 32.4 29 0.00063 37.4 2.1 69 417-486 480-555 (559)
192 smart00442 FGF Acidic and basi 32.4 1.4E+02 0.003 26.9 6.3 62 458-520 13-78 (126)
193 PRK00865 glutamate racemase; P 32.0 1.8E+02 0.0039 29.5 7.8 57 191-248 18-74 (261)
194 PRK05799 coproporphyrinogen II 31.7 1.7E+02 0.0037 31.2 8.0 60 141-218 134-194 (374)
195 PF15232 DUF4585: Domain of un 31.5 39 0.00084 27.6 2.2 28 398-425 9-44 (75)
196 PF06268 Fascin: Fascin domain 31.3 1.5E+02 0.0033 25.6 6.3 36 477-514 22-58 (111)
197 PRK08446 coproporphyrinogen II 30.7 3.5E+02 0.0075 28.7 10.1 60 141-218 133-193 (350)
198 PRK12435 ferrochelatase; Provi 30.4 6.5E+02 0.014 26.3 13.3 152 76-249 90-254 (311)
199 PF08002 DUF1697: Protein of u 30.2 85 0.0018 28.7 4.6 36 54-98 6-41 (137)
200 PRK05628 coproporphyrinogen II 30.1 3.1E+02 0.0067 29.2 9.6 95 79-218 108-203 (375)
201 PRK09856 fructoselysine 3-epim 29.9 1.7E+02 0.0037 29.4 7.3 60 78-164 92-151 (275)
202 PRK15014 6-phospho-beta-glucos 29.7 1.6E+02 0.0036 32.7 7.6 66 314-382 367-448 (477)
203 PRK09058 coproporphyrinogen II 29.3 5.9E+02 0.013 28.0 11.9 84 142-243 199-295 (449)
204 PF00762 Ferrochelatase: Ferro 28.9 6E+02 0.013 26.6 11.3 156 75-251 99-264 (316)
205 PRK00694 4-hydroxy-3-methylbut 28.8 1.9E+02 0.0042 32.8 7.8 53 76-166 42-99 (606)
206 PRK02048 4-hydroxy-3-methylbut 28.6 2.2E+02 0.0048 32.6 8.2 53 76-166 38-95 (611)
207 KOG3737 Predicted polypeptide 28.4 38 0.00082 36.4 2.1 61 421-484 531-597 (603)
208 COG1809 (2R)-phospho-3-sulfola 28.0 3.4E+02 0.0075 27.2 8.4 120 78-252 92-213 (258)
209 PF06229 FRG1: FRG1-like famil 27.9 1.2E+02 0.0026 29.5 5.4 31 477-507 25-56 (191)
210 PF02679 ComA: (2R)-phospho-3- 27.8 1.2E+02 0.0026 30.7 5.5 51 77-164 85-135 (244)
211 COG2876 AroA 3-deoxy-D-arabino 26.5 4E+02 0.0086 27.5 8.8 57 78-163 61-117 (286)
212 PF08447 PAS_3: PAS fold; Int 25.8 67 0.0015 25.8 2.9 25 36-60 67-91 (91)
213 PRK13125 trpA tryptophan synth 25.7 6.8E+02 0.015 24.9 11.6 78 141-250 115-192 (244)
214 cd06542 GH18_EndoS-like Endo-b 25.5 4.9E+02 0.011 25.8 9.7 25 140-164 49-73 (255)
215 PRK13210 putative L-xylulose 5 25.4 1.2E+02 0.0025 30.6 5.2 60 78-164 96-155 (284)
216 PF08452 DNAP_B_exo_N: DNA pol 25.4 32 0.00069 21.2 0.6 8 56-63 3-10 (22)
217 PF01791 DeoC: DeoC/LacD famil 25.2 1E+02 0.0022 30.7 4.5 52 80-161 80-131 (236)
218 PF00332 Glyco_hydro_17: Glyco 25.1 1.2E+02 0.0026 31.8 5.2 107 77-243 14-121 (310)
219 COG2240 PdxK Pyridoxal/pyridox 24.5 4.4E+02 0.0095 27.3 8.9 87 146-252 19-113 (281)
220 cd02875 GH18_chitobiase Chitob 24.4 4.2E+02 0.0092 28.2 9.3 90 145-249 67-157 (358)
221 PRK09997 hydroxypyruvate isome 24.4 2.6E+02 0.0057 27.9 7.4 60 78-164 87-146 (258)
222 TIGR00067 glut_race glutamate 23.8 3.1E+02 0.0067 27.7 7.8 58 191-249 11-69 (251)
223 PRK09057 coproporphyrinogen II 23.6 8.7E+02 0.019 25.9 11.7 82 142-241 140-232 (380)
224 PF06268 Fascin: Fascin domain 23.2 2E+02 0.0042 24.9 5.5 70 441-514 25-98 (111)
225 PRK05904 coproporphyrinogen II 23.1 3.7E+02 0.0081 28.6 8.6 86 141-244 138-230 (353)
226 PLN03244 alpha-amylase; Provis 22.8 70 0.0015 37.8 3.1 33 127-162 429-461 (872)
227 PRK08207 coproporphyrinogen II 22.5 3.2E+02 0.007 30.5 8.3 43 141-199 304-347 (488)
228 PF12697 Abhydrolase_6: Alpha/ 22.3 2.4E+02 0.0052 25.8 6.4 56 194-249 14-72 (228)
229 PLN02925 4-hydroxy-3-methylbut 22.0 4.1E+02 0.0088 31.1 8.8 53 76-166 107-164 (733)
230 PF03992 ABM: Antibiotic biosy 22.0 1.9E+02 0.0041 22.4 4.8 33 187-219 15-48 (78)
231 cd07944 DRE_TIM_HOA_like 4-hyd 21.9 3.5E+02 0.0075 27.5 7.8 24 140-163 107-130 (266)
232 cd02992 PDI_a_QSOX PDIa family 21.7 2E+02 0.0044 24.9 5.3 53 144-216 11-63 (114)
233 PRK09936 hypothetical protein; 21.5 9.4E+02 0.02 25.1 11.1 59 77-167 39-97 (296)
234 COG4996 Predicted phosphatase 21.4 2.2E+02 0.0049 26.2 5.4 37 36-90 22-58 (164)
235 COG3661 AguA Alpha-glucuronida 21.2 4.5E+02 0.0098 29.0 8.5 101 78-213 185-286 (684)
236 cd02067 B12-binding B12 bindin 21.2 2E+02 0.0043 25.0 5.2 43 203-254 49-92 (119)
237 PRK12331 oxaloacetate decarbox 21.1 6.4E+02 0.014 27.9 10.1 43 51-99 75-119 (448)
238 TIGR02867 spore_II_P stage II 20.8 2.7E+02 0.0058 27.2 6.3 24 143-166 69-93 (196)
239 PRK10673 acyl-CoA esterase; Pr 20.8 3E+02 0.0065 26.5 7.0 62 193-257 31-94 (255)
240 PF01261 AP_endonuc_2: Xylose 20.4 4.5E+02 0.0098 24.4 7.9 97 139-250 68-165 (213)
241 TIGR00433 bioB biotin syntheta 20.3 9E+02 0.019 24.4 11.1 93 140-253 156-251 (296)
242 TIGR02629 L_rham_iso_rhiz L-rh 20.3 6.5E+02 0.014 27.6 9.6 100 139-253 147-249 (412)
243 cd07943 DRE_TIM_HOA 4-hydroxy- 20.2 4.4E+02 0.0096 26.5 8.2 21 142-162 112-132 (263)
244 COG0635 HemN Coproporphyrinoge 20.2 4.6E+02 0.01 28.6 8.7 96 79-219 137-233 (416)
245 cd06547 GH85_ENGase Endo-beta- 20.1 3.3E+02 0.0071 28.9 7.4 97 146-251 50-150 (339)
246 PF10566 Glyco_hydro_97: Glyco 20.0 2E+02 0.0043 29.7 5.5 71 71-166 27-97 (273)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=100.00 E-value=1.2e-36 Score=309.53 Aligned_cols=268 Identities=22% Similarity=0.359 Sum_probs=201.1
Q ss_pred EcCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhcc
Q 008330 47 VDENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIG 126 (570)
Q Consensus 47 Vd~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~ 126 (570)
||.+|++|.++|+|..... ....+++++.|+++|||+||||+.+..+.+
T Consensus 1 ~~~~G~~v~~~G~n~~w~~---------~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~---------------------- 49 (281)
T PF00150_consen 1 VDQNGKPVNWRGFNTHWYN---------PSITEADFDQLKALGFNTVRIPVGWEAYQE---------------------- 49 (281)
T ss_dssp ECTTSEBEEEEEEEETTSG---------GGSHHHHHHHHHHTTESEEEEEEESTSTST----------------------
T ss_pred CCCCCCeEEeeeeecccCC---------CCCHHHHHHHHHHCCCCEEEeCCCHHHhcC----------------------
Confidence 7999999999999975111 015789999999999999999999854331
Q ss_pred CcccCCCCC-CCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 008330 127 GIQSNNPSI-VDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVR 205 (570)
Q Consensus 127 g~~~~nP~~-~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p 205 (570)
.+|.. .+.+.+++|+++|++|.++||+||||+|.. |+|+... +. +.......+.+.++|+.||+|||+++
T Consensus 50 ----~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~-~~w~~~~---~~-~~~~~~~~~~~~~~~~~la~~y~~~~ 120 (281)
T PF00150_consen 50 ----PNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA-PGWANGG---DG-YGNNDTAQAWFKSFWRALAKRYKDNP 120 (281)
T ss_dssp ----TSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES-TTCSSST---ST-TTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ----CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC-ccccccc---cc-cccchhhHHHHHhhhhhhccccCCCC
Confidence 12232 467899999999999999999999999997 5663221 11 11111124556789999999999999
Q ss_pred cEEEEeccCCCCCCCCC-------hhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCcchh-hhhcccCcCCCCCEEEEE
Q 008330 206 NVVGMSLRNELRGPKQN-------VKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSF-VRNQAVNLTFTGKLVFEA 277 (570)
Q Consensus 206 ~Vig~dL~NEP~~~~~~-------~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~dl~~-~~~~p~~l~~~~nlVys~ 277 (570)
.|++|||+|||+..... ...|.+++++++++||+++|+++|++++..|+.+... ....|. ..++++||++
T Consensus 121 ~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~ 198 (281)
T PF00150_consen 121 PVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPN--DADNNDVYSF 198 (281)
T ss_dssp TTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTT--TTTTSEEEEE
T ss_pred cEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccccchhhhcCcc--cccCceeEEe
Confidence 99999999999886321 2678899999999999999999999999888877665 444552 1358999999
Q ss_pred eecCCCCC-CCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCcchHHHHHHHHHHHHHCCCceEEec
Q 008330 278 HWYGFTDG-QAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELDWDWALWT 356 (570)
Q Consensus 278 H~Y~~~~~-~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~~~~~~~~~~~~~~~~~~gigw~~W~ 356 (570)
|.|.+..+ ..+... .......+...+.....++.+.+.||+|||||....+.. ....+...++++++++++||++|+
T Consensus 199 H~Y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~pv~~gE~G~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~W~ 276 (281)
T PF00150_consen 199 HFYDPYDFSDQWNPG-NWGDASALESSFRAALNWAKKNGKPVVVGEFGWSNNDGN-GSTDYADAWLDYLEQNGIGWIYWS 276 (281)
T ss_dssp EEETTTCHHTTTSTC-SHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSTTTSC-HHHHHHHHHHHHHHHTTCEEEECE
T ss_pred eEeCCCCcCCccccc-cchhhhHHHHHHHHHHHHHHHcCCeEEEeCcCCcCCCCC-cCHHHHHHHHHHHHHCCCeEEEEe
Confidence 99997654 222210 011122344555666666777899999999999855433 346777888999999999999999
Q ss_pred cC
Q 008330 357 LV 358 (570)
Q Consensus 357 ~~ 358 (570)
|+
T Consensus 277 ~~ 278 (281)
T PF00150_consen 277 WK 278 (281)
T ss_dssp ES
T ss_pred cC
Confidence 97
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=233.39 Aligned_cols=258 Identities=19% Similarity=0.274 Sum_probs=169.3
Q ss_pred EcCCCCEEEEEEeeCCCCCCc-cccCCCCCChH-----HHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhcc
Q 008330 47 VDENGHRVKLACVNWVSHLEP-VVAEGLSKQPM-----DMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLG 120 (570)
Q Consensus 47 Vd~~G~~v~L~GVNw~g~~~~-~v~~Gl~~~~~-----~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg 120 (570)
++....+..+.+++|+|.+.. ...+|++.... +++++.|+++|||+||||+.++.+.. .
T Consensus 38 ~~~~~~~~~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~--~------------- 102 (407)
T COG2730 38 TDPKESPGQLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQA--T------------- 102 (407)
T ss_pred cCCCCCcceeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhc--c-------------
Confidence 566778899999999998743 24556655444 89999999999999999999875521 0
Q ss_pred chhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q 008330 121 LLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDG-NGFFGDQYFNPDLWIKGLTKMAT 199 (570)
Q Consensus 121 ~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dg-ng~~~d~~~~~~~~~~~w~~iA~ 199 (570)
...||.+.+.+.+..++++|++|.++||||+||+|..+++..|....+ ...|.....+.+++++.|++||.
T Consensus 103 --------~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~ 174 (407)
T COG2730 103 --------DGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIAN 174 (407)
T ss_pred --------CCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHH
Confidence 015888886677779999999999999999999999976554433222 12233333446899999999999
Q ss_pred HhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHH----HhcCCCcEEEEeCCCCCC---------------cchhh
Q 008330 200 IFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAV----HAANPEVLVILSGLNFDK---------------DLSFV 260 (570)
Q Consensus 200 ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aI----r~~dp~~lIiVeG~~w~~---------------dl~~~ 260 (570)
||++.++|+|||++|||++. ...+.|..+..++++.| .+..|..+|.++|..+.. .....
T Consensus 175 ~f~~~~~VIg~~~~NEP~~~-~~~~~w~~~~~~A~~~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (407)
T COG2730 175 RFKNYDTVIGFELINEPNGI-VTSETWNGGDDEAYDVVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGV 253 (407)
T ss_pred hccCCCceeeeeeecCCccc-CCccccccchHHHHHHHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCc
Confidence 99999999999999999961 12234544444555555 344555588888764432 01111
Q ss_pred hhcccCcC--CCCCEEEEEeecCCCCC--CCCCCCCCcchhhHHHHHHHHHHHH-HHhcCCCeEEeccccCCC
Q 008330 261 RNQAVNLT--FTGKLVFEAHWYGFTDG--QAWVDGNPNQVCGRVVDNVMRLSGF-LLEQGWPLFVSEFGADLR 328 (570)
Q Consensus 261 ~~~p~~l~--~~~nlVys~H~Y~~~~~--~~w~~~~~~~~~~~~~~~~~~~~g~-l~~~g~Pv~iGEFG~~~~ 328 (570)
...|++.+ ...+++|++|.|++... ..|...............+.+.+++ +...+.|+++||||....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ge~g~~~~ 326 (407)
T COG2730 254 YIVPVDDPGLTANKHLYAPHVYGDDVLNGGSWTVGGEFDLAETDCAIWLNYVGHGARKNGYPTVIGEFGGNYN 326 (407)
T ss_pred eeeeccchhhhccceeccceeecchhhcCCCCCccCCcccccccceeeecceeecccccceeeeeccccCccc
Confidence 11222222 24688999999986643 2343210000011111111222221 124889999999999884
No 3
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.52 E-value=4.7e-12 Score=143.45 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=155.3
Q ss_pred eEecCCeEEcCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhh
Q 008330 39 LSTNSRWIVDENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQK 118 (570)
Q Consensus 39 L~t~G~~IVd~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~ 118 (570)
++++++.|. -+|++|+|||+|+.... +....+.....+..+++.||++|+|+||+.... .
T Consensus 278 i~~~~~~f~-lNG~pv~lrG~~~h~~~-~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p---------~--------- 337 (604)
T PRK10150 278 VAVKGGQFL-INGKPFYFKGFGKHEDA-DIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYP---------Y--------- 337 (604)
T ss_pred EEEeCCEEE-ECCEEEEEEeeeccCCC-CccCCcCCHHHHHHHHHHHHHCCCCEEEeccCC---------C---------
Confidence 344444332 39999999999974221 222223333345678899999999999993210 0
Q ss_pred ccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEec--CCCCCCccc-----cCCCCCCCCCCC---CCCHH
Q 008330 119 LGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDN--HISKPGWCC-----SNSDGNGFFGDQ---YFNPD 188 (570)
Q Consensus 119 lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~--H~~~~~w~~-----~~~dgng~~~d~---~~~~~ 188 (570)
=+++.+.|.+.||+|+-+. |... .|.. ...+. .-|... ....+
T Consensus 338 -------------------------~~~~~~~cD~~GllV~~E~p~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 390 (604)
T PRK10150 338 -------------------------SEEMLDLADRHGIVVIDETPAVGLN-LSFGAGLEAGNKPK-ETYSEEAVNGETQQ 390 (604)
T ss_pred -------------------------CHHHHHHHHhcCcEEEEeccccccc-cccccccccccccc-ccccccccchhHHH
Confidence 1357889999999999775 2110 0100 00000 001100 01245
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCcchhhhhcccCcC
Q 008330 189 LWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVNLT 268 (570)
Q Consensus 189 ~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~dl~~~~~~p~~l~ 268 (570)
.+.+.++.|.+|++++|.|+++.+.||+.... ..-..+++++++.+|+.||.++|......... . .....
T Consensus 391 ~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~---~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~-~---~~~~~--- 460 (604)
T PRK10150 391 AHLQAIRELIARDKNHPSVVMWSIANEPASRE---QGAREYFAPLAELTRKLDPTRPVTCVNVMFAT-P---DTDTV--- 460 (604)
T ss_pred HHHHHHHHHHHhccCCceEEEEeeccCCCccc---hhHHHHHHHHHHHHHhhCCCCceEEEecccCC-c---ccccc---
Confidence 56778899999999999999999999986532 23445667888999999999999987632110 0 00000
Q ss_pred CCCCEEEEEeecCCCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCC------C---C-cchHH
Q 008330 269 FTGKLVFEAHWYGFTDGQAWVDGNP--NQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRG------N---N-VNDNR 336 (570)
Q Consensus 269 ~~~nlVys~H~Y~~~~~~~w~~~~~--~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~------~---~-~~~~~ 336 (570)
.+---|+++|.|.. |..... ...-..+...+.+ +....+.|++++|||+.... + + +....
T Consensus 461 ~~~~Dv~~~N~Y~~-----wy~~~~~~~~~~~~~~~~~~~---~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~ 532 (604)
T PRK10150 461 SDLVDVLCLNRYYG-----WYVDSGDLETAEKVLEKELLA---WQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQCA 532 (604)
T ss_pred cCcccEEEEcccce-----ecCCCCCHHHHHHHHHHHHHH---HHHhcCCCEEEEccCCccccccccCCCCCCCHHHHHH
Confidence 01234788887642 111100 0000111112211 11113799999999964311 0 1 11234
Q ss_pred HHHHHHHHHHHCC--CceEEeccCceeecccC-ccCCCceeeeecCCC
Q 008330 337 YLNCFFGVAAELD--WDWALWTLVGSYYLREG-VIGLNEYYGLFDWNW 381 (570)
Q Consensus 337 ~~~~~~~~~~~~g--igw~~W~~~G~y~~r~~-~~~~~et~Gll~~dw 381 (570)
+++...+.++++. +|-+.|++.. |....+ ....++..||++.|.
T Consensus 533 ~~~~~~~~~~~~p~~~G~~iW~~~D-~~~~~g~~~~~g~~~Gl~~~dr 579 (604)
T PRK10150 533 FLDMYHRVFDRVPAVVGEQVWNFAD-FATSQGILRVGGNKKGIFTRDR 579 (604)
T ss_pred HHHHHHHHHhcCCceEEEEEEeeec-cCCCCCCcccCCCcceeEcCCC
Confidence 5666666666554 4777887642 111011 112346789999884
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.49 E-value=2.9e-12 Score=132.65 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=97.8
Q ss_pred EecCCeEEcCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhc
Q 008330 40 STNSRWIVDENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKL 119 (570)
Q Consensus 40 ~t~G~~IVd~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~l 119 (570)
.++++.|. -+|++++|||||+.... +..........++.++..||++|||+||+.-...
T Consensus 2 ev~~~~~~-lNGk~~~l~Gv~~h~~~-~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~------------------- 60 (298)
T PF02836_consen 2 EVKDGGFY-LNGKPIFLRGVNRHQDY-PGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPP------------------- 60 (298)
T ss_dssp EEETTEEE-ETTEEE-EEEEEE-S-B-TTTBT---HHHHHHHHHHHHHTT-SEEEETTS---------------------
T ss_pred EEECCEEE-ECCEEEEEEEEeeCcCc-ccccccCCHHHHHHHHHHHHhcCcceEEcccccC-------------------
Confidence 45555543 39999999999976432 1111112223467788999999999999822110
Q ss_pred cchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 008330 120 GLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMA 198 (570)
Q Consensus 120 g~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA 198 (570)
-.++++.|.+.||+|+.++-... +.|.... ..+....+. ...+.+.+-++.+.
T Consensus 61 ------------------------~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~v 114 (298)
T PF02836_consen 61 ------------------------SPRFYDLCDELGILVWQEIPLEGHGSWQDFG-NCNYDADDP-EFRENAEQELREMV 114 (298)
T ss_dssp ------------------------SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTS-CTSCTTTSG-GHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHhhcCCEEEEeccccccCccccCC-ccccCCCCH-HHHHHHHHHHHHHH
Confidence 14577889999999998864311 1121000 000000111 12456778899999
Q ss_pred HHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 199 TIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 199 ~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
.|++++|.|+.+.+.||+ ....+++++.+.+|+.||.++|.....
T Consensus 115 ~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 115 RRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp HHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred HcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeeccc
Confidence 999999999999999999 344556788899999999999988765
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.31 E-value=2.4e-10 Score=116.50 Aligned_cols=163 Identities=14% Similarity=0.179 Sum_probs=88.9
Q ss_pred CCCCCeEecCCeEEc-CCCCEEEEEEeeCCCCCCccccCCCCC----ChHHHHHHHHHHcCCcEEEecccccccccCccc
Q 008330 34 AIGLPLSTNSRWIVD-ENGHRVKLACVNWVSHLEPVVAEGLSK----QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLA 108 (570)
Q Consensus 34 ~~~~~L~t~G~~IVd-~~G~~v~L~GVNw~g~~~~~v~~Gl~~----~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~ 108 (570)
+...|+.++|++|.+ ++|++|.+|||.+............++ .--+.++..|+++|+|+||+ .+
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRV-Y~---------- 74 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRV-YS---------- 74 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEE-S-----------
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEE-EE----------
Confidence 344689999999997 799999999999753221100001110 11356788999999999998 11
Q ss_pred cchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHH
Q 008330 109 SLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPD 188 (570)
Q Consensus 109 n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~ 188 (570)
.+|.. -.|++++.+.+.|||||||+-... ++-....+ + ..++ .
T Consensus 75 ----------------------vdp~~-------nHd~CM~~~~~aGIYvi~Dl~~p~----~sI~r~~P-~--~sw~-~ 117 (314)
T PF03198_consen 75 ----------------------VDPSK-------NHDECMSAFADAGIYVILDLNTPN----GSINRSDP-A--PSWN-T 117 (314)
T ss_dssp ------------------------TTS---------HHHHHHHHHTT-EEEEES-BTT----BS--TTS----------H
T ss_pred ----------------------eCCCC-------CHHHHHHHHHhCCCEEEEecCCCC----ccccCCCC-c--CCCC-H
Confidence 12222 268999999999999999997652 11111111 0 0122 3
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCC--ChhHHHH-HHHHHHHHHHhcCCCc
Q 008330 189 LWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ--NVKDWYR-YMQLGAEAVHAANPEV 244 (570)
Q Consensus 189 ~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~--~~~~W~~-~~~~~~~aIr~~dp~~ 244 (570)
...+....+...|+.++|++||-.-||-..... ....+.+ +++.+-+.|++.+.+.
T Consensus 118 ~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~ 176 (314)
T PF03198_consen 118 DLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS 176 (314)
T ss_dssp HHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC
Confidence 456677889999999999999999999864321 2233433 3444444466666543
No 6
>TIGR03356 BGL beta-galactosidase.
Probab=99.17 E-value=3.3e-09 Score=115.20 Aligned_cols=137 Identities=11% Similarity=0.088 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..+++++.|+++|||++|++++|..+.++. +.-.+...++.++.+|++|.++||
T Consensus 55 ~y~eDi~l~~~~G~~~~R~si~Wsri~p~g--------------------------~~~~n~~~~~~y~~~i~~l~~~gi 108 (427)
T TIGR03356 55 RYEEDVALMKELGVDAYRFSIAWPRIFPEG--------------------------TGPVNPKGLDFYDRLVDELLEAGI 108 (427)
T ss_pred hHHHHHHHHHHcCCCeEEcccchhhcccCC--------------------------CCCcCHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999998765520 011356789999999999999999
Q ss_pred EEEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-------------CC
Q 008330 157 MVILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-------------QN 222 (570)
Q Consensus 157 ~VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~-------------~~ 222 (570)
.+|+++|+.. |.|... ..||.+.. ..+.|.++++.+++||++... -+.++|||.... .+
T Consensus 109 ~pivtL~Hfd~P~~l~~---~gGw~~~~--~~~~f~~ya~~~~~~~~d~v~--~w~t~NEp~~~~~~~y~~G~~~P~~~~ 181 (427)
T TIGR03356 109 EPFVTLYHWDLPQALED---RGGWLNRD--TAEWFAEYAAVVAERLGDRVK--HWITLNEPWCSAFLGYGLGVHAPGLRD 181 (427)
T ss_pred eeEEeeccCCccHHHHh---cCCCCChH--HHHHHHHHHHHHHHHhCCcCC--EEEEecCcceecccchhhccCCCCCcc
Confidence 9999998754 544321 23555432 368999999999999999643 358999997321 01
Q ss_pred hh-HH------HHHHHHHHHHHHhcCCCcEE
Q 008330 223 VK-DW------YRYMQLGAEAVHAANPEVLV 246 (570)
Q Consensus 223 ~~-~W------~~~~~~~~~aIr~~dp~~lI 246 (570)
.. .+ .....++++++|+..|+..|
T Consensus 182 ~~~~~~~~hnll~Aha~A~~~~~~~~~~~~I 212 (427)
T TIGR03356 182 LRAALQAAHHLLLAHGLAVQALRANGPGAQV 212 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 11 11 12335788889998887443
No 7
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.14 E-value=3.4e-09 Score=113.34 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=78.1
Q ss_pred cCCCCCChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHH
Q 008330 70 AEGLSKQPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVV 148 (570)
Q Consensus 70 ~~Gl~~~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV 148 (570)
||-......+++++.|+++|||+||| .++|..+++. |... -+..||++|
T Consensus 4 pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~---------------------------eG~y---dF~~lD~~l 53 (374)
T PF02449_consen 4 PEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE---------------------------EGQY---DFSWLDRVL 53 (374)
T ss_dssp GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB---------------------------TTB------HHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCC---------------------------CCee---ecHHHHHHH
Confidence 44444466899999999999999998 4677666542 1112 356799999
Q ss_pred HHHhcCCCEEEEec-CCCCCCccccCC------CCCC---CCCCC---CCC----HHHHHHHHHHHHHHhCCCCcEEEEe
Q 008330 149 ASLGNNNVMVILDN-HISKPGWCCSNS------DGNG---FFGDQ---YFN----PDLWIKGLTKMATIFNGVRNVVGMS 211 (570)
Q Consensus 149 ~~a~~~Gl~VILD~-H~~~~~w~~~~~------dgng---~~~d~---~~~----~~~~~~~w~~iA~ryk~~p~Vig~d 211 (570)
+.|.++||+|||.. +...|.|..... +.++ -++.. .++ .+...++.+.|++||+++|+|+++.
T Consensus 54 ~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~ 133 (374)
T PF02449_consen 54 DLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQ 133 (374)
T ss_dssp HHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEE
T ss_pred HHHHhccCeEEEEecccccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEE
Confidence 99999999999976 334466642110 1111 01111 112 3456778899999999999999999
Q ss_pred ccCCCCC
Q 008330 212 LRNELRG 218 (570)
Q Consensus 212 L~NEP~~ 218 (570)
+-|||..
T Consensus 134 i~NE~~~ 140 (374)
T PF02449_consen 134 IDNEPGY 140 (374)
T ss_dssp ECCSTTC
T ss_pred eccccCc
Confidence 9999966
No 8
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.13 E-value=4e-09 Score=110.04 Aligned_cols=225 Identities=19% Similarity=0.225 Sum_probs=126.1
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
..+.++.||+.|+|.|||=+ +-+ |.-.+..-++...+..+.|+++||.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv----wv~----------------------------P~~~g~~~~~~~~~~akrak~~Gm~ 73 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV----WVN----------------------------PYDGGYNDLEDVIALAKRAKAAGMK 73 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-----SS-----------------------------TTTTTTSHHHHHHHHHHHHHTT-E
T ss_pred CCCHHHHHHhcCCCeEEEEe----ccC----------------------------CcccccCCHHHHHHHHHHHHHCCCe
Confidence 35789999999999999944 211 1111122356788888999999999
Q ss_pred EEEecCCCCCCccccCCC--CCCCCCCCCCCHHH----HHHHHHHHHHHhCCCCc-EEEEeccCCCCC-------CCCCh
Q 008330 158 VILDNHISKPGWCCSNSD--GNGFFGDQYFNPDL----WIKGLTKMATIFNGVRN-VVGMSLRNELRG-------PKQNV 223 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~d--gng~~~d~~~~~~~----~~~~w~~iA~ryk~~p~-Vig~dL~NEP~~-------~~~~~ 223 (570)
|+||+|-++ .|...... +.. |.+. +.++ ..++=+.+-++++..-- +=.+.+-||-.. ...+.
T Consensus 74 vlldfHYSD-~WaDPg~Q~~P~a-W~~~--~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~ 149 (332)
T PF07745_consen 74 VLLDFHYSD-FWADPGKQNKPAA-WANL--SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNW 149 (332)
T ss_dssp EEEEE-SSS-S--BTTB-B--TT-CTSS--SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-H
T ss_pred EEEeecccC-CCCCCCCCCCCcc-CCCC--CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCH
Confidence 999999654 45322111 112 3221 2222 23344455666665421 224689999543 22456
Q ss_pred hHHHHHHHHHHHHHHhcCCCcEEEEeCCC-CCCc-----chhhhhcccCcCCCCCEEEEEeecCCCCCCCCCCCCCcchh
Q 008330 224 KDWYRYMQLGAEAVHAANPEVLVILSGLN-FDKD-----LSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVC 297 (570)
Q Consensus 224 ~~W~~~~~~~~~aIr~~dp~~lIiVeG~~-w~~d-----l~~~~~~p~~l~~~~nlVys~H~Y~~~~~~~w~~~~~~~~~ 297 (570)
..+.++..++++|||+++|+..|+|--.+ .+.+ +..+...-++ --|+.+++|++... ..
T Consensus 150 ~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d-----~DviGlSyYP~w~~----------~l 214 (332)
T PF07745_consen 150 DNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVD-----FDVIGLSYYPFWHG----------TL 214 (332)
T ss_dssp HHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG------SEEEEEE-STTST-----------H
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCC-----cceEEEecCCCCcc----------hH
Confidence 66778889999999999999999985322 2211 1223333222 33889999996542 12
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCC---------------------cchHHHHHHHHHHHHH----CCCce
Q 008330 298 GRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNN---------------------VNDNRYLNCFFGVAAE----LDWDW 352 (570)
Q Consensus 298 ~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~---------------------~~~~~~~~~~~~~~~~----~gigw 352 (570)
+++...+... ..+.+.||+|.|.|.+....+ +....|++++++.+.+ .|+|-
T Consensus 215 ~~l~~~l~~l---~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~Gv 291 (332)
T PF07745_consen 215 EDLKNNLNDL---ASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGV 291 (332)
T ss_dssp HHHHHHHHHH---HHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEE
T ss_pred HHHHHHHHHH---HHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3333333321 123678999999998776110 1356899999998887 67899
Q ss_pred EEec
Q 008330 353 ALWT 356 (570)
Q Consensus 353 ~~W~ 356 (570)
+||-
T Consensus 292 fYWe 295 (332)
T PF07745_consen 292 FYWE 295 (332)
T ss_dssp EEE-
T ss_pred Eeec
Confidence 9995
No 9
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.10 E-value=4e-09 Score=125.51 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=96.9
Q ss_pred CCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcc
Q 008330 50 NGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQ 129 (570)
Q Consensus 50 ~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~ 129 (570)
+|++|+|||||+..+. +..........+..+++.||++|+|+||+.. |++
T Consensus 330 NGkpi~lrGvnrh~~~-p~~G~a~~~e~~~~dl~lmK~~g~NavR~sH---------yP~-------------------- 379 (1021)
T PRK10340 330 NNRYVKLHGVNRHDND-HRKGRAVGMDRVEKDIQLMKQHNINSVRTAH---------YPN-------------------- 379 (1021)
T ss_pred CCEEEEEEEeecCCCC-cccCccCCHHHHHHHHHHHHHCCCCEEEecC---------CCC--------------------
Confidence 8999999999986442 1111112334467889999999999999832 110
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEE
Q 008330 130 SNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVG 209 (570)
Q Consensus 130 ~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig 209 (570)
=.+..+.|.+.||+|+-+.-....+|.+.. + -.+..+...-.+.+.+-.+.|.+|++++|.|+.
T Consensus 380 --------------~~~fydlcDe~GllV~dE~~~e~~g~~~~~-~-~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~ 443 (1021)
T PRK10340 380 --------------DPRFYELCDIYGLFVMAETDVESHGFANVG-D-ISRITDDPQWEKVYVDRIVRHIHAQKNHPSIII 443 (1021)
T ss_pred --------------CHHHHHHHHHCCCEEEECCcccccCccccc-c-cccccCCHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 124678899999999987411111111100 0 011111101124556678899999999999999
Q ss_pred EeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 210 MSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 210 ~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
+.+.||.... .. ++++++.+|+.||.++|..++
T Consensus 444 WslGNE~~~g----~~----~~~~~~~~k~~DptR~v~~~~ 476 (1021)
T PRK10340 444 WSLGNESGYG----CN----IRAMYHAAKALDDTRLVHYEE 476 (1021)
T ss_pred EECccCcccc----HH----HHHHHHHHHHhCCCceEEeCC
Confidence 9999998432 12 357789999999999998876
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.07 E-value=5.2e-09 Score=124.45 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=98.0
Q ss_pred CCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcc
Q 008330 50 NGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQ 129 (570)
Q Consensus 50 ~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~ 129 (570)
+|++++|||||+..+.. ..........+..++..||++|+|+||+.. |++
T Consensus 346 NGkpi~lrGvn~h~~~p-~~G~a~t~e~~~~di~lmK~~g~NaVR~sH---------yP~-------------------- 395 (1027)
T PRK09525 346 NGKPLLIRGVNRHEHHP-EHGQVMDEETMVQDILLMKQHNFNAVRCSH---------YPN-------------------- 395 (1027)
T ss_pred CCEEEEEEEeEccccCc-ccCccCCHHHHHHHHHHHHHCCCCEEEecC---------CCC--------------------
Confidence 89999999999864421 111223334467889999999999999932 110
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhcCCCEEEEec----CCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 008330 130 SNNPSIVDLPLIKAFQAVVASLGNNNVMVILDN----HISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVR 205 (570)
Q Consensus 130 ~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~----H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p 205 (570)
=.+..+.|.+.||+|+-+. |...+. .....+..+ .+.+.+-++.|..|.+++|
T Consensus 396 --------------~p~fydlcDe~GilV~dE~~~e~hg~~~~--------~~~~~dp~~-~~~~~~~~~~mV~RdrNHP 452 (1027)
T PRK09525 396 --------------HPLWYELCDRYGLYVVDEANIETHGMVPM--------NRLSDDPRW-LPAMSERVTRMVQRDRNHP 452 (1027)
T ss_pred --------------CHHHHHHHHHcCCEEEEecCccccCCccc--------cCCCCCHHH-HHHHHHHHHHHHHhCCCCC
Confidence 0245788999999999874 322110 000111111 3556777889999999999
Q ss_pred cEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 206 NVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 206 ~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
.|+.+.+.||+... .+ ..++++.+|+.||.++|..++.
T Consensus 453 SIi~WSlgNE~~~g-~~-------~~~l~~~~k~~DptRpV~y~~~ 490 (1027)
T PRK09525 453 SIIIWSLGNESGHG-AN-------HDALYRWIKSNDPSRPVQYEGG 490 (1027)
T ss_pred EEEEEeCccCCCcC-hh-------HHHHHHHHHhhCCCCcEEECCC
Confidence 99999999998532 11 3567788999999999999873
No 11
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.98 E-value=3.9e-08 Score=99.68 Aligned_cols=210 Identities=15% Similarity=0.209 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCCEEE---EecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 141 IKAFQAVVASLGNNNVMVI---LDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VI---LD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
++..|++|++|.++||.|. |=.|...|.|.... +.....+.+.++.+.+++||++. |..+|+.|||.
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--------~~~~~~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~ 84 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--------SKETLLARLENHIKTVVGRYKGK--IYAWDVVNEAL 84 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--------CHHHHHHHHHHHHHHHHHHhCCc--ceEEEEeeecc
Confidence 6789999999999999982 22333345553210 01112456788899999999987 77799999997
Q ss_pred CCCCC---hhHHH-----HHHHHHHHHHHhcCCCcEEEEeCCCCCCc-------chh---hhhcccCcCCCCCEEEEEee
Q 008330 218 GPKQN---VKDWY-----RYMQLGAEAVHAANPEVLVILSGLNFDKD-------LSF---VRNQAVNLTFTGKLVFEAHW 279 (570)
Q Consensus 218 ~~~~~---~~~W~-----~~~~~~~~aIr~~dp~~lIiVeG~~w~~d-------l~~---~~~~p~~l~~~~nlVys~H~ 279 (570)
...+. ...|+ .++..+.+++|+++|+..+++.+.+-... +.. +....+ ++ +-+=+..|+
T Consensus 85 ~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~--~i-DgiGlQ~H~ 161 (254)
T smart00633 85 HDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGV--PI-DGIGLQSHL 161 (254)
T ss_pred cCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCC--cc-ceeeeeeee
Confidence 54211 12453 57788999999999999999975331111 111 111111 22 344556677
Q ss_pred cCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCcchHHHHHHHHHHHHHCC--CceEEecc
Q 008330 280 YGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELD--WDWALWTL 357 (570)
Q Consensus 280 Y~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~~~~~~~~~~~~~~~~~~g--igw~~W~~ 357 (570)
+... + ....+.+.+++ +.+.|.||+|+|+++..........++++.+++.+.++. .|-++|.+
T Consensus 162 ~~~~---------~--~~~~~~~~l~~----~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~ 226 (254)
T smart00633 162 SLGS---------P--NIAEIRAALDR----FASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGV 226 (254)
T ss_pred cCCC---------C--CHHHHHHHHHH----HHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCC
Confidence 5311 0 12344444443 344799999999999875432345678899988888764 57789987
Q ss_pred CceeecccCccCCCceeeeecCCCCC
Q 008330 358 VGSYYLREGVIGLNEYYGLFDWNWCD 383 (570)
Q Consensus 358 ~G~y~~r~~~~~~~et~Gll~~dw~~ 383 (570)
...+-.+. ++..||++.|+..
T Consensus 227 ~d~~~W~~-----~~~~~L~d~~~~~ 247 (254)
T smart00633 227 TDKYSWLD-----GGAPLLFDANYQP 247 (254)
T ss_pred ccCCcccC-----CCCceeECCCCCC
Confidence 53221111 1235788777643
No 12
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=3.1e-07 Score=92.02 Aligned_cols=234 Identities=16% Similarity=0.120 Sum_probs=133.8
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.+|+.|+|-|||-+-.+ ++.+ .-|+.-.+-.-++..-++-+.|.++||+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwnd-----P~ds--------------------ngn~yggGnnD~~k~ieiakRAk~~GmK 119 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWND-----PYDS--------------------NGNGYGGGNNDLKKAIEIAKRAKNLGMK 119 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecC-----CccC--------------------CCCccCCCcchHHHHHHHHHHHHhcCcE
Confidence 46789999999999999955221 1111 0122222223345566777899999999
Q ss_pred EEEecCCCCCCccccCC--CCCCCCCCCCCC--HHHHHHHHHHHHHHhCCCCc-EEEEeccCCCCCC-------CCChhH
Q 008330 158 VILDNHISKPGWCCSNS--DGNGFFGDQYFN--PDLWIKGLTKMATIFNGVRN-VVGMSLRNELRGP-------KQNVKD 225 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~--dgng~~~d~~~~--~~~~~~~w~~iA~ryk~~p~-Vig~dL~NEP~~~-------~~~~~~ 225 (570)
|++|+|-++ -|..... ....|=.. .|. +....++=+.+.+.++++-- .=...+-||-.+. ..+.+-
T Consensus 120 Vl~dFHYSD-fwaDPakQ~kPkaW~~l-~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k 197 (403)
T COG3867 120 VLLDFHYSD-FWADPAKQKKPKAWENL-NFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDK 197 (403)
T ss_pred EEeeccchh-hccChhhcCCcHHhhhc-CHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHH
Confidence 999999763 2321100 00011111 111 11222344556666665422 1235788997654 125667
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEE---eCCCCCC---cchhhhhcccCcCCCCCEEEEEeecCCCCCCCCCCCCCcchhhH
Q 008330 226 WYRYMQLGAEAVHAANPEVLVIL---SGLNFDK---DLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGR 299 (570)
Q Consensus 226 W~~~~~~~~~aIr~~dp~~lIiV---eG~~w~~---dl~~~~~~p~~l~~~~nlVys~H~Y~~~~~~~w~~~~~~~~~~~ 299 (570)
|.....+++.|||+++|+.+|++ +|..-+. -++.+..+.+ +--|+..-+|++.+. ...+
T Consensus 198 ~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nv-----dfDVig~SyYpyWhg----------tl~n 262 (403)
T COG3867 198 MAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNV-----DFDVIGSSYYPYWHG----------TLNN 262 (403)
T ss_pred HHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCC-----CceEEeeeccccccC----------cHHH
Confidence 77888999999999999999888 3432111 1122333333 334888889987553 1234
Q ss_pred HHHHHHHHHHHHHhcCCCeEEeccccCCC--CC--C-----------------cchHHHHHHHHHHHH----HCCCceEE
Q 008330 300 VVDNVMRLSGFLLEQGWPLFVSEFGADLR--GN--N-----------------VNDNRYLNCFFGVAA----ELDWDWAL 354 (570)
Q Consensus 300 ~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~--~~--~-----------------~~~~~~~~~~~~~~~----~~gigw~~ 354 (570)
+...+++.. ...+.-|+|-|-+.... ++ . +....+++++++... .+|+|=+|
T Consensus 263 L~~nl~dia---~rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFY 339 (403)
T COG3867 263 LTTNLNDIA---SRYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFY 339 (403)
T ss_pred HHhHHHHHH---HHhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEE
Confidence 444444422 12556788888887331 10 0 124567777777765 45788899
Q ss_pred ec
Q 008330 355 WT 356 (570)
Q Consensus 355 W~ 356 (570)
|-
T Consensus 340 WE 341 (403)
T COG3867 340 WE 341 (403)
T ss_pred ec
Confidence 96
No 13
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.90 E-value=4.8e-09 Score=108.25 Aligned_cols=178 Identities=11% Similarity=0.128 Sum_probs=99.2
Q ss_pred cCCeEEcCCCCEEEEEEe-eCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccc--c-Cccccchhhhhhh
Q 008330 42 NSRWIVDENGHRVKLACV-NWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLAT--N-DSLASLTVRQSFQ 117 (570)
Q Consensus 42 ~G~~IVd~~G~~v~L~GV-Nw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~--~-~~~~n~tv~~s~~ 117 (570)
+||.|++++|+|+..-|- -|..+ +.+.....+..++..++.|||+||+-+-..... . ..++..+.
T Consensus 1 n~r~f~~~dG~Pff~lgdT~W~~~------~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~----- 69 (289)
T PF13204_consen 1 NGRHFVYADGTPFFWLGDTAWSLF------HRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPF----- 69 (289)
T ss_dssp TSSSEEETTS-B--EEEEE-TTHH------HH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS------
T ss_pred CCceEecCCCCEEeehhHHHHHHh------hCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCC-----
Confidence 588999999999998773 35432 222223457789999999999999966432111 0 00110000
Q ss_pred hccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEE-EecCCC---CCCccccCCCCCCCCCCCCCCHHHHHHH
Q 008330 118 KLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVI-LDNHIS---KPGWCCSNSDGNGFFGDQYFNPDLWIKG 193 (570)
Q Consensus 118 ~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VI-LD~H~~---~~~w~~~~~dgng~~~d~~~~~~~~~~~ 193 (570)
.... + ...+..-.++.+|+.+|++|+.|.++||.+- |=+|.. ++.|..+ ...+.++...++
T Consensus 70 ----~~~~-~-~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~~~m~~e~~~~Y 134 (289)
T PF13204_consen 70 ----PDED-P-GQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------PNIMPPENAERY 134 (289)
T ss_dssp ----SSTT--------TT----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------TTSS-HHHHHHH
T ss_pred ----CCCC-c-cccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------ccCCCHHHHHHH
Confidence 0000 0 0012223467899999999999999999984 445521 1223111 134678999999
Q ss_pred HHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 194 LTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 194 w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
++.|++||+.+|||+ +.|-||=.......+.|. ++++.|++.+|..|+.+=.
T Consensus 135 ~~yv~~Ry~~~~Nvi-W~l~gd~~~~~~~~~~w~----~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 135 GRYVVARYGAYPNVI-WILGGDYFDTEKTRADWD----AMARGIKENDPYQLITIHP 186 (289)
T ss_dssp HHHHHHHHTT-SSEE-EEEESSS--TTSSHHHHH----HHHHHHHHH--SS-EEEEE
T ss_pred HHHHHHHHhcCCCCE-EEecCccCCCCcCHHHHH----HHHHHHHhhCCCCcEEEeC
Confidence 999999999999999 999999821122456664 5678999999988888844
No 14
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=3.3e-08 Score=104.51 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHcCCcEEEecccc-cccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPL-YLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~-~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
.++++++.++.+|++.+|+-+-. +-..+ . .|+ .| -.+.+.+++..++.|...+
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d-------------~-------~G~--~n----a~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRD-------------K-------EGY--RN----AGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhh-------------h-------hce--ec----ccccHHHHHHHhhhcccCc
Confidence 45667778889999999996321 11100 0 011 00 1234778999999999999
Q ss_pred CEEEEec-----CCCCCCcccc---CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-CChhHH
Q 008330 156 VMVILDN-----HISKPGWCCS---NSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-QNVKDW 226 (570)
Q Consensus 156 l~VILD~-----H~~~~~w~~~---~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~-~~~~~W 226 (570)
|+|++-+ |...-.|... .........|+. ....+.++.+.+.+.||.+|.+.|+.|.|||.... .+.+..
T Consensus 81 lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k-~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f 159 (587)
T COG3934 81 LKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPK-FRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNF 159 (587)
T ss_pred ceEEEEEeecccccCcceeEeecCCCCCccccccchh-hcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHH
Confidence 9997643 4332222110 001111111211 13445678888999999999999999999987642 244455
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeCCCCCCcchhhhhcccC--cCCCCCEEEEEeecCCCCCCC---CCCCCCcchhhHHH
Q 008330 227 YRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVN--LTFTGKLVFEAHWYGFTDGQA---WVDGNPNQVCGRVV 301 (570)
Q Consensus 227 ~~~~~~~~~aIr~~dp~~lIiVeG~~w~~dl~~~~~~p~~--l~~~~nlVys~H~Y~~~~~~~---w~~~~~~~~~~~~~ 301 (570)
..+..++...|+.+||+|+|-++...+-- .+.+...+. .++ -++|.|..++... |...-
T Consensus 160 ~~w~~emy~yiK~ldd~hlvsvGD~~sp~--~~~~pyN~r~~vDy-----a~~hLY~hyd~sl~~r~s~~y--------- 223 (587)
T COG3934 160 WDWSGEMYAYIKWLDDGHLVSVGDPASPW--PQYAPYNARFYVDY-----AANHLYRHYDTSLVSRVSTVY--------- 223 (587)
T ss_pred HHHHHHHHHHhhccCCCCeeecCCcCCcc--cccCCcccceeecc-----ccchhhhhccCChhheeeeee---------
Confidence 55666778999999999999998764310 011111111 111 1678886443211 11000
Q ss_pred HHHHHHHHHHHhcC-CCeEEeccccCCCCCCcchHHHHHHHHHHHHHCCCceEEeccCceeecccCccC----CCceeee
Q 008330 302 DNVMRLSGFLLEQG-WPLFVSEFGADLRGNNVNDNRYLNCFFGVAAELDWDWALWTLVGSYYLREGVIG----LNEYYGL 376 (570)
Q Consensus 302 ~~~~~~~g~l~~~g-~Pv~iGEFG~~~~~~~~~~~~~~~~~~~~~~~~gigw~~W~~~G~y~~r~~~~~----~~et~Gl 376 (570)
...+.......| .||++-|||.+...+......|+-.....++--+.|-.+|++.+---..+..+. .+..|||
T Consensus 224 --g~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~lal~~ggdGaLiwclsdf~~gsdd~ey~w~p~el~fgi 301 (587)
T COG3934 224 --GKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRLALDTGGDGALIWCLSDFHLGSDDSEYTWGPMELEFGI 301 (587)
T ss_pred --cchhhccchhcccceeeccccCCcccccccccchhhhhhhhHHhhcCCceEEEEecCCccCCCCCCCccccccceeee
Confidence 000011112255 899999999988655332233322222244455678889998754211112221 2567888
Q ss_pred ecCCCCC
Q 008330 377 FDWNWCD 383 (570)
Q Consensus 377 l~~dw~~ 383 (570)
++.|-..
T Consensus 302 Iradgpe 308 (587)
T COG3934 302 IRADGPE 308 (587)
T ss_pred ecCCCch
Confidence 8877443
No 15
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=3.1e-06 Score=91.07 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.|++||+|+.|+.++|..+-++ . .....++..++.+++++++|.++||.
T Consensus 61 YkeDi~L~~emG~~~~R~SI~WsRIfP~----g---------------------~~~e~N~~gl~fY~~l~del~~~gIe 115 (460)
T COG2723 61 YKEDIALAKEMGLNAFRTSIEWSRIFPN----G---------------------DGGEVNEKGLRFYDRLFDELKARGIE 115 (460)
T ss_pred hHHHHHHHHHcCCCEEEeeeeEEEeecC----C---------------------CCCCcCHHHHHHHHHHHHHHHHcCCE
Confidence 6899999999999999999999665441 1 11124567999999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-------------CCh
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-------------QNV 223 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~-------------~~~ 223 (570)
.++.+|+.+ |.|... ...||-+ + -..+.|.++-+.+++||++. |--+=.+|||.... ...
T Consensus 116 p~vTL~Hfd~P~~L~~--~ygGW~n-R-~~i~~F~~ya~~vf~~f~dk--Vk~W~TFNE~n~~~~~~y~~~~~~p~~~~~ 189 (460)
T COG2723 116 PFVTLYHFDLPLWLQK--PYGGWEN-R-ETVDAFARYAATVFERFGDK--VKYWFTFNEPNVVVELGYLYGGHPPGIVDP 189 (460)
T ss_pred EEEEecccCCcHHHhh--ccCCccC-H-HHHHHHHHHHHHHHHHhcCc--ceEEEEecchhhhhcccccccccCCCccCH
Confidence 999998864 443221 1124433 3 24688999999999999997 44467899997641 011
Q ss_pred hHHH-------HHHHHHHHHHHhcCCC-cE
Q 008330 224 KDWY-------RYMQLGAEAVHAANPE-VL 245 (570)
Q Consensus 224 ~~W~-------~~~~~~~~aIr~~dp~-~l 245 (570)
+.-+ .+-..+++++|+.+|+ .+
T Consensus 190 ~~~~qa~hh~~lA~A~avk~~~~~~~~~kI 219 (460)
T COG2723 190 KAAYQVAHHMLLAHALAVKAIKKINPKGKV 219 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcCce
Confidence 1111 1224678899999997 44
No 16
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.32 E-value=1.1e-06 Score=77.22 Aligned_cols=95 Identities=24% Similarity=0.520 Sum_probs=71.4
Q ss_pred CCCCceeeeecCCCCceecCCCCC---CCCccccCCcceeecccceEEeeccCC-ccceeccccC--CCCCceeEeeccc
Q 008330 416 HPATGLCVQRKSFLDPLTLGPCTE---SEAWSYTPHKTISLKGAYFCLQAKHVG-KPAKLGIICT--DCGSTWEIISDSK 489 (570)
Q Consensus 416 ~~~tg~c~~~~~~~~~~~~~~c~~---~~~W~~~~~~~~~~~~~~~cl~a~~~g-~~~~~~~~c~--~~~~~W~~~s~~~ 489 (570)
...+|+|+++.+...++.+.+|.. ++.|.|+.++.|+++ +++||++.+.. .++.+ ..|. +++|+|.+..++.
T Consensus 3 ~~~~~~Cl~~~~~~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~-~~~Cl~~~~~~~~~v~l-~~c~~~~~~Q~W~~~~~~~ 80 (117)
T smart00458 3 SGNTGKCLDVNGNSNPVGLFDCHGTGGNQLWKLTSDGAIRIA-TDLCLTANGNTGSTVTL-YSCDGDADNQYWTVNKDGT 80 (117)
T ss_pred eccCCccEecCCCCceEEEEeCCCCCccceEEEeCCCeEEec-CCccCccCCCCCCEEEE-EECCCCCcCCEEEECCCee
Confidence 347899999865424589999987 389999988888887 89999988864 34444 7887 5789999987554
Q ss_pred cEEEEecCCCceEEEeecCCC---ceeecce
Q 008330 490 MHLSSKADNGTTVCLDVDSSN---TIVTNTC 517 (570)
Q Consensus 490 ~~~~~~~~~~~~~cld~~~~~---~~~~~~c 517 (570)
+ ... .+.+|||+.... .++.+.|
T Consensus 81 i--~~~---~~~~cl~~~~~~~~~~~~~~~c 106 (117)
T smart00458 81 I--RNP---DSGLCLDVKDGNTGTKVILWTC 106 (117)
T ss_pred E--EeC---CCCEEEecCCCCCCceEEEEeC
Confidence 3 222 689999997533 5777776
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=98.32 E-value=1.5e-06 Score=95.57 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..+++++.|+++|+|+.|++++|..+.++. .+...++..++.++.+|+++.++||
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g-------------------------~~~~~n~~~~~~Y~~~i~~l~~~gi 126 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQG-------------------------DELTPNQQGIAFYRSVFEECKKYGI 126 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCC-------------------------CCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999998776521 0112366789999999999999999
Q ss_pred EEEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 157 MVILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 157 ~VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.+||.+|+.. |.|... .-.||-+.. ..+.|.++++.++++|++.-. -+=.+|||.
T Consensus 127 ~p~VtL~H~~~P~~l~~--~~GGW~~~~--~~~~F~~ya~~~~~~fgd~Vk--~WiTfNEPn 182 (474)
T PRK09852 127 EPLVTLCHFDVPMHLVT--EYGSWRNRK--MVEFFSRYARTCFEAFDGLVK--YWLTFNEIN 182 (474)
T ss_pred EEEEEeeCCCCCHHHHH--hcCCCCCHH--HHHHHHHHHHHHHHHhcCcCC--eEEeecchh
Confidence 9999988754 555321 012554432 368999999999999998632 244667775
No 18
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.30 E-value=1.6e-06 Score=73.47 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=46.3
Q ss_pred HHHHhCCCCcEEEEeccCC-CCCCC-------C--ChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCcchhhhhcccC
Q 008330 197 MATIFNGVRNVVGMSLRNE-LRGPK-------Q--NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVN 266 (570)
Q Consensus 197 iA~ryk~~p~Vig~dL~NE-P~~~~-------~--~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~dl~~~~~~p~~ 266 (570)
|.++|++.+.|+++||.|| |.... . ..+....++++++.+||+++|+++|.++. |+.+...+.....
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~--~~~~~~~~~~~~~- 77 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF--WGGDWEDLEQLQA- 77 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B----S-TTHHHHS---
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec--ccCCHHHHHHhch-
Confidence 5689999999999999999 65211 0 12455678899999999999999998764 4433333332221
Q ss_pred cCCCCCEEEEEeec
Q 008330 267 LTFTGKLVFEAHWY 280 (570)
Q Consensus 267 l~~~~nlVys~H~Y 280 (570)
+.--|+++|.|
T Consensus 78 ---~~~DvisfH~Y 88 (88)
T PF12876_consen 78 ---ENLDVISFHPY 88 (88)
T ss_dssp ---TT-SSEEB-EE
T ss_pred ---hcCCEEeeecC
Confidence 13347899998
No 19
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.4e-05 Score=92.50 Aligned_cols=140 Identities=18% Similarity=0.155 Sum_probs=95.3
Q ss_pred CCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcc
Q 008330 50 NGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQ 129 (570)
Q Consensus 50 ~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~ 129 (570)
+|++|++|||||--+. +....+.....++.+++.||++|+|+||.. .+ ++
T Consensus 296 NGkpvf~kGvnrHe~~-~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-Hy--------P~-------------------- 345 (808)
T COG3250 296 NGKPVFIRGVNRHEDD-PILGRVTDEDAMERDLKLMKEANMNSVRTS-HY--------PN-------------------- 345 (808)
T ss_pred CCeEEEEeeeecccCC-CccccccCHHHHHHHHHHHHHcCCCEEEec-CC--------CC--------------------
Confidence 9999999999995332 111122222337889999999999999985 21 11
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEE
Q 008330 130 SNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVG 209 (570)
Q Consensus 130 ~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig 209 (570)
=+...+.|.+.||+||-|.-... ... ..+..+ .+...+-.+.|.+|-|++|.|+.
T Consensus 346 --------------~~~~ydLcDelGllV~~Ea~~~~----~~~------~~~~~~-~k~~~~~i~~mver~knHPSIii 400 (808)
T COG3250 346 --------------SEEFYDLCDELGLLVIDEAMIET----HGM------PDDPEW-RKEVSEEVRRMVERDRNHPSIII 400 (808)
T ss_pred --------------CHHHHHHHHHhCcEEEEecchhh----cCC------CCCcch-hHHHHHHHHHHHHhccCCCcEEE
Confidence 13456789999999999853321 000 111111 34455667889999999999999
Q ss_pred EeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 008330 210 MSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLN 252 (570)
Q Consensus 210 ~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~ 252 (570)
+.+.||+.-+. ..| .+...+.+.+|...+..++..
T Consensus 401 Ws~gNE~~~g~---~~~-----~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 401 WSLGNESGHGS---NHW-----ALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred EeccccccCcc---ccH-----HHHHHHhhcCCccceeccCcc
Confidence 99999996532 223 244667788888888888765
No 20
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=98.20 E-value=4.5e-06 Score=91.90 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..+++++.|+++|+|+.|+.++|..+.++. . +...+...++.++++|+++.++||
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G---------------------~----~~~~N~~gl~~Y~~lid~l~~~GI 124 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKG---------------------D----EAQPNEEGLKFYDDMFDELLKYNI 124 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCC---------------------C----CCCCCHHHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999998776521 0 111356789999999999999999
Q ss_pred EEEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 157 MVILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 157 ~VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
..||.+|+.. |.|... .-.||-+ + ...+.|.++.+.++++|++.-. -+=.+|||.
T Consensus 125 ~P~vTL~H~dlP~~L~~--~yGGW~n-~-~~~~~F~~Ya~~~f~~fgdrVk--~WiT~NEp~ 180 (477)
T PRK15014 125 EPVITLSHFEMPLHLVQ--QYGSWTN-R-KVVDFFVRFAEVVFERYKHKVK--YWMTFNEIN 180 (477)
T ss_pred EEEEEeeCCCCCHHHHH--hcCCCCC-h-HHHHHHHHHHHHHHHHhcCcCC--EEEEecCcc
Confidence 9999997754 554321 0124443 3 2478999999999999999733 244788885
No 21
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.18 E-value=7.2e-06 Score=71.80 Aligned_cols=93 Identities=28% Similarity=0.607 Sum_probs=69.7
Q ss_pred CceeeeecCC--CCceecCCCCCC---CCccccCCcceeecccceEEeeccC--CccceeccccC--CCCCceeEeeccc
Q 008330 419 TGLCVQRKSF--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHV--GKPAKLGIICT--DCGSTWEIISDSK 489 (570)
Q Consensus 419 tg~c~~~~~~--~~~~~~~~c~~~---~~W~~~~~~~~~~~~~~~cl~a~~~--g~~~~~~~~c~--~~~~~W~~~s~~~ 489 (570)
+|+|+++.+. ..++.+.+|.++ +.|.++.++.|+++.+++||++.+. |.++.+ ..|. +++|+|++..+.
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~~~~~~~~-~~c~~~~~~Q~W~~~~~~- 86 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAPGSKVRL-YTCSGGSDNQRWTFNKDG- 86 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCCCCCEEEE-EECCCCCcCCEEEECCCc-
Confidence 8999998552 355899999874 7999999888888778899998885 566666 7887 467999998763
Q ss_pred cEEEEecCCCceEEEeecCC---C-ceeecce
Q 008330 490 MHLSSKADNGTTVCLDVDSS---N-TIVTNTC 517 (570)
Q Consensus 490 ~~~~~~~~~~~~~cld~~~~---~-~~~~~~c 517 (570)
+|... .+.+|||+... + .|+...|
T Consensus 87 -~i~~~---~~~~cl~~~~~~~~~~~v~~~~c 114 (124)
T cd00161 87 -TIRNL---KSGKCLDVKGGNTNGTNLILWTC 114 (124)
T ss_pred -EEEEC---CCCeEEeCCCCCCCCCEEEEEeC
Confidence 34333 37899999753 3 4555666
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.18 E-value=1.6e-05 Score=83.34 Aligned_cols=213 Identities=13% Similarity=0.125 Sum_probs=109.0
Q ss_pred CCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcc
Q 008330 50 NGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQ 129 (570)
Q Consensus 50 ~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~ 129 (570)
+|+|+.|.+--..-+ -+...-.++.++.||++|+|+|-+++.|...++.
T Consensus 5 ~g~~~~~~~Ge~hy~-------r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~------------------------ 53 (319)
T PF01301_consen 5 DGKPFFILSGEFHYF-------RIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPE------------------------ 53 (319)
T ss_dssp TTEEE-EEEEEE-GG-------GS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSB------------------------
T ss_pred CCEEEEEEEeeeccc-------cCChhHHHHHHHHHHhCCcceEEEeccccccCCC------------------------
Confidence 788888876543211 1222346889999999999999999999766541
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCC--CCCC-CC------CCCC---HHHHHHHHHHH
Q 008330 130 SNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDG--NGFF-GD------QYFN---PDLWIKGLTKM 197 (570)
Q Consensus 130 ~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dg--ng~~-~d------~~~~---~~~~~~~w~~i 197 (570)
|...|-+...-|+++|+.|+++||+|||-. +.|.|+.-+. -+.| .. +..+ .+.+.+.++.|
T Consensus 54 ---~g~~df~g~~dl~~f~~~a~~~gl~vilrp----Gpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~ 126 (319)
T PF01301_consen 54 ---EGQFDFTGNRDLDRFLDLAQENGLYVILRP----GPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRAL 126 (319)
T ss_dssp ---TTB---SGGG-HHHHHHHHHHTT-EEEEEE----ES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHH
T ss_pred ---CCcccccchhhHHHHHHHHHHcCcEEEecc----cceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHH
Confidence 112222333458999999999999999973 3455543321 1112 10 0111 23444555666
Q ss_pred HHHhCC-----CCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEE-eCCCCCCcchhhhhcccCcCCCC
Q 008330 198 ATIFNG-----VRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVIL-SGLNFDKDLSFVRNQAVNLTFTG 271 (570)
Q Consensus 198 A~ryk~-----~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiV-eG~~w~~dl~~~~~~p~~l~~~~ 271 (570)
++..+. --.||++.+=||-.... . =..|++.+.++.++..++.++.. .+..|+.-+. .. ..++
T Consensus 127 ~~~~~~~~~~~GGpII~vQvENEyg~~~-~---~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~---~~----~~~g 195 (319)
T PF01301_consen 127 AKIIKPLQYTNGGPIIMVQVENEYGSYG-T---DRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLP---DG----GLPG 195 (319)
T ss_dssp HHHHGGGBGGGTSSEEEEEESSSGGCTS-S----HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHC---CC-----TTT
T ss_pred HHHHHhhhhcCCCceehhhhhhhhCCCc-c---cHhHHHHHHHHHHHhhCccceeeccCCCcccccc---cC----CCCc
Confidence 555443 24699999999986321 2 24666777777788777633333 2222322111 10 1123
Q ss_pred CEEEEEeecCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCC
Q 008330 272 KLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADL 327 (570)
Q Consensus 272 nlVys~H~Y~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~ 327 (570)
..+|...-+.+... + .+.+..... .....|.+++||+...
T Consensus 196 ~~~~~~~~~~~~~~-----------~---~~~~~~~~~--~~p~~P~~~~E~~~Gw 235 (319)
T PF01301_consen 196 ADIYATDNFPPGDN-----------P---DEYFGDQRS--FQPNQPLMCTEFWGGW 235 (319)
T ss_dssp GSCEEEEEETTTSS-----------H---HHHHHHHHH--HHTTS--EEEEEESS-
T ss_pred ceEEeccccCCCch-----------H---HHHHhhhhh--cCCCCCeEEEEecccc
Confidence 34777777765421 1 111211111 2255699999996543
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.15 E-value=4.4e-05 Score=80.08 Aligned_cols=217 Identities=15% Similarity=0.242 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHhcCCCEEE---EecCCCCCCccccCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCCcEEEEeccC
Q 008330 141 IKAFQAVVASLGNNNVMVI---LDNHISKPGWCCSNSDGNGFFGDQYF---NPDLWIKGLTKMATIFNGVRNVVGMSLRN 214 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VI---LD~H~~~~~w~~~~~dgng~~~d~~~---~~~~~~~~w~~iA~ryk~~p~Vig~dL~N 214 (570)
++..|+++++|.++||.|- |=.|...|.|....... +... -.+...+..+.|++||++...|..+|+.|
T Consensus 58 ~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~-----~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvN 132 (320)
T PF00331_consen 58 FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNLANG-----SPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVN 132 (320)
T ss_dssp -HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTS-----SBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEE
T ss_pred ccchhHHHHHHHhcCcceeeeeEEEcccccceeeeccCC-----CcccHHHHHHHHHHHHHHHHhHhccccceEEEEEee
Confidence 5779999999999999995 66787667775321000 0000 13445678889999999887899999999
Q ss_pred CCCCCCC-----ChhHHH-----HHHHHHHHHHHhcCCCcEEEEeCCCCCCc---------chhhhhcccCcCCCCCEEE
Q 008330 215 ELRGPKQ-----NVKDWY-----RYMQLGAEAVHAANPEVLVILSGLNFDKD---------LSFVRNQAVNLTFTGKLVF 275 (570)
Q Consensus 215 EP~~~~~-----~~~~W~-----~~~~~~~~aIr~~dp~~lIiVeG~~w~~d---------l~~~~~~p~~l~~~~nlVy 275 (570)
||..... ....|+ .|+..+.+..|+++|+...++-..+--.. +..+.... ++. +-+=+
T Consensus 133 E~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~g--vpI-dgIG~ 209 (320)
T PF00331_consen 133 EAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAKLFYNDYNIESPAKRDAYLNLVKDLKARG--VPI-DGIGL 209 (320)
T ss_dssp S-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTT--HCS--EEEE
T ss_pred ecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcEEEeccccccchHHHHHHHHHHHHHHhCC--Ccc-ceech
Confidence 9976531 123566 46788999999999999999954332111 01111111 122 45777
Q ss_pred EEeecCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCC------cchHHHHHHHHHHHHHCC
Q 008330 276 EAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNN------VNDNRYLNCFFGVAAELD 349 (570)
Q Consensus 276 s~H~Y~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~------~~~~~~~~~~~~~~~~~g 349 (570)
-.|+-.... .+.+.+.+++ +.+.|.||.|+|+-+...... .....+++.++..+.++.
T Consensus 210 Q~H~~~~~~------------~~~i~~~l~~----~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~ 273 (320)
T PF00331_consen 210 QSHFDAGYP------------PEQIWNALDR----FASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHP 273 (320)
T ss_dssp EEEEETTSS------------HHHHHHHHHH----HHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCCC------------HHHHHHHHHH----HHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 888765321 2344444443 455899999999999776542 134678888888888877
Q ss_pred ---C-ceEEeccCceeecccCccCCCceeeeecCCCCC
Q 008330 350 ---W-DWALWTLVGSYYLREGVIGLNEYYGLFDWNWCD 383 (570)
Q Consensus 350 ---i-gw~~W~~~G~y~~r~~~~~~~et~Gll~~dw~~ 383 (570)
+ |-++|.+...+-.+.... .+.-+|++.+|..
T Consensus 274 ~~~v~git~Wg~~D~~sW~~~~~--~~~~~lfd~~~~~ 309 (320)
T PF00331_consen 274 PAAVEGITWWGFTDGYSWRPDTP--PDRPLLFDEDYQP 309 (320)
T ss_dssp HCTEEEEEESSSBTTGSTTGGHS--EG--SSB-TTSBB
T ss_pred ccCCCEEEEECCCCCCcccCCCC--CCCCeeECCCcCC
Confidence 3 678898764442222111 2234567777654
No 24
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.14 E-value=3.2e-05 Score=85.69 Aligned_cols=245 Identities=16% Similarity=0.258 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCC----CCCCHHHHHHHHHHHHHHhCCCC---cE--EEEe
Q 008330 141 IKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGD----QYFNPDLWIKGLTKMATIFNGVR---NV--VGMS 211 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d----~~~~~~~~~~~w~~iA~ryk~~p---~V--ig~d 211 (570)
|..+|+++|.+.++||+.+|.+=-.+. +..+. ....|+.. ...+.++|.++.+++++||.+.- .| .-||
T Consensus 83 f~~lD~i~D~l~~~g~~P~vel~f~p~-~~~~~-~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fE 160 (486)
T PF01229_consen 83 FTYLDQILDFLLENGLKPFVELGFMPM-ALASG-YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFE 160 (486)
T ss_dssp -HHHHHHHHHHHHCT-EEEEEE-SB-G-GGBSS---EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHcCCEEEEEEEechh-hhcCC-CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEE
Confidence 688999999999999999999865432 11111 11112211 22457889888888888775421 11 2599
Q ss_pred ccCCCCCCC----CChhHHHHHHHHHHHHHHhcCCCcEEEEeCC--CCCCc------chhhhhcccCcCCCCCEEEEEee
Q 008330 212 LRNELRGPK----QNVKDWYRYMQLGAEAVHAANPEVLVILSGL--NFDKD------LSFVRNQAVNLTFTGKLVFEAHW 279 (570)
Q Consensus 212 L~NEP~~~~----~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~--~w~~d------l~~~~~~p~~l~~~~nlVys~H~ 279 (570)
+.|||.... ....++.++++.++++||+++|...| +|+ .++.. +.+...+.+.++ .+|+|.
T Consensus 161 iWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~v--GGp~~~~~~~~~~~~~l~~~~~~~~~~D-----fiS~H~ 233 (486)
T PF01229_consen 161 IWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKV--GGPAFAWAYDEWCEDFLEFCKGNNCPLD-----FISFHS 233 (486)
T ss_dssp ESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEE--EEEEEETT-THHHHHHHHHHHHCT---S-----EEEEEE
T ss_pred eCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcc--cCccccccHHHHHHHHHHHHhcCCCCCC-----EEEEEe
Confidence 999998642 24567889999999999999999864 444 34321 122333222222 579999
Q ss_pred cCCCCCCCCCCCCCcchh---hHHHHHHHHHHHHHHh---cCCCeEEeccccCCCCCC-cchHHHHHHH-HH-HHHHCC-
Q 008330 280 YGFTDGQAWVDGNPNQVC---GRVVDNVMRLSGFLLE---QGWPLFVSEFGADLRGNN-VNDNRYLNCF-FG-VAAELD- 349 (570)
Q Consensus 280 Y~~~~~~~w~~~~~~~~~---~~~~~~~~~~~g~l~~---~g~Pv~iGEFG~~~~~~~-~~~~~~~~~~-~~-~~~~~g- 349 (570)
|+...... ......... ..+...+......+.+ -.+|+.++||+......+ ..|..|..++ +. .++..+
T Consensus 234 y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~ 312 (486)
T PF01229_consen 234 YGTDSAED-INENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGA 312 (486)
T ss_dssp E-BESESE--SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGG
T ss_pred cccccccc-cchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHHHHHHhhhh
Confidence 98432100 000000111 1122223222233333 357799999998765443 2343443333 22 233333
Q ss_pred -Cc-eEEeccCceeecccCccC--CCceeeeecCCCCCccchhHHHHHHhcccc
Q 008330 350 -WD-WALWTLVGSYYLREGVIG--LNEYYGLFDWNWCDIRNSSFLERISSLQSP 399 (570)
Q Consensus 350 -ig-w~~W~~~G~y~~r~~~~~--~~et~Gll~~dw~~~~~~~~~~~~~~l~~~ 399 (570)
++ ..||++..-+.-. +++. --..+||++.+ ..+-|.+ ..++.|.++
T Consensus 313 ~l~~~sywt~sD~Fee~-~~~~~pf~ggfGLlt~~--gI~KPa~-~A~~~L~~l 362 (486)
T PF01229_consen 313 FLDSFSYWTFSDRFEEN-GTPRKPFHGGFGLLTKL--GIPKPAY-YAFQLLNKL 362 (486)
T ss_dssp T-SEEEES-SBS---TT-SS-SSSSSS-S-SEECC--CEE-HHH-HHHHHHTT-
T ss_pred hhhhhhccchhhhhhcc-CCCCCceecchhhhhcc--CCCchHH-HHHHHHHhh
Confidence 34 6899986433211 1111 12458999887 5555543 244444443
No 25
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=98.07 E-value=3.7e-05 Score=84.80 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.|++||+|+-|+.++|.-+.++ |. +...++..++.++++|+++.++||.
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~---------------------G~----~~~~N~~gl~~Y~~lId~L~~~GI~ 129 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPK---------------------GD----ELEPNEAGLQFYEDIFKECHKYGIE 129 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccC---------------------CC----CCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 6899999999999999999999766542 10 1113567899999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.||.+|+.. |.|... .-.||-+.. ..+.|.++-+.++++|++.-. -+=.+|||.
T Consensus 130 P~VTL~H~dlP~~L~~--~~GGW~n~~--~v~~F~~YA~~~~~~fgdrVk--~WiT~NEP~ 184 (478)
T PRK09593 130 PLVTITHFDCPMHLIE--EYGGWRNRK--MVGFYERLCRTLFTRYKGLVK--YWLTFNEIN 184 (478)
T ss_pred EEEEecccCCCHHHHh--hcCCCCChH--HHHHHHHHHHHHHHHhcCcCC--EEEeecchh
Confidence 999998754 555321 113554432 368899999999999999622 345778885
No 26
>PLN03059 beta-galactosidase; Provisional
Probab=98.05 E-value=0.00012 Score=84.32 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=108.3
Q ss_pred CCeEecCCeEEcCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhh
Q 008330 37 LPLSTNSRWIVDENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSF 116 (570)
Q Consensus 37 ~~L~t~G~~IVd~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~ 116 (570)
..++.+++.|+ -+|+|++|.+--..-+. ++..+ .++.++.||++|+|+|=.-+.|.+.++.
T Consensus 28 ~~v~~d~~~f~-idG~p~~i~sG~iHY~R---~~p~~----W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~----------- 88 (840)
T PLN03059 28 ASVSYDHRAFI-INGQRRILISGSIHYPR---STPEM----WPDLIQKAKDGGLDVIQTYVFWNGHEPS----------- 88 (840)
T ss_pred eEEEEeCCEEE-ECCEEEEEEEeCcccCc---CCHHH----HHHHHHHHHHcCCCeEEEEecccccCCC-----------
Confidence 36888888764 48999999765532221 23323 4788999999999999987776655431
Q ss_pred hhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCC--CCC-C-CC-----CCC-
Q 008330 117 QKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGN--GFF-G-DQ-----YFN- 186 (570)
Q Consensus 117 ~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgn--g~~-~-d~-----~~~- 186 (570)
|...+-+...-|.+.|+.|++.||||||= ++.+.|+.-+.- +.| - ++ ..+
T Consensus 89 ----------------~G~~dF~G~~DL~~Fl~la~e~GLyvilR----pGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~ 148 (840)
T PLN03059 89 ----------------PGNYYFEDRYDLVKFIKVVQAAGLYVHLR----IGPYICAEWNFGGFPVWLKYVPGIEFRTDNG 148 (840)
T ss_pred ----------------CCeeeccchHHHHHHHHHHHHcCCEEEec----CCcceeeeecCCCCchhhhcCCCcccccCCH
Confidence 11122233455899999999999999995 334555533221 223 1 10 011
Q ss_pred --HHHHHHHHHHHHHHhCC-------CCcEEEEeccCCCCCCCC---ChhHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 187 --PDLWIKGLTKMATIFNG-------VRNVVGMSLRNELRGPKQ---NVKDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 187 --~~~~~~~w~~iA~ryk~-------~p~Vig~dL~NEP~~~~~---~~~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
.++..++++.|+.+.+. --.||++.+=||= +... ...+ ..|++.+.+..++.+-+++.+..
T Consensus 149 ~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY-Gs~~~~~~~~d-~~Yl~~l~~~~~~~Gi~VPl~t~ 221 (840)
T PLN03059 149 PFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY-GPVEWEIGAPG-KAYTKWAADMAVKLGTGVPWVMC 221 (840)
T ss_pred HHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc-cceecccCcch-HHHHHHHHHHHHHcCCCcceEEC
Confidence 23445667777777642 2358999999994 3210 0112 56788888888888887766553
No 27
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=98.01 E-value=3.4e-05 Score=84.99 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..+++++.|+++|+|+-|+.++|.-+.++ |. .-.+...++.++++|+++.++||
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~---------------------G~-----g~vN~~gl~~Y~~lid~l~~~GI 108 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPD---------------------GY-----GEVNPKGVEYYHRLFAECHKRHV 108 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcC---------------------CC-----CCcCHHHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999766542 10 11356789999999999999999
Q ss_pred EEEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 157 MVILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 157 ~VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
..+|.+|+.. |.|... ..||.+.. ..+.|.++-+.++++|++ |--+=.+|||..
T Consensus 109 ~P~VTL~H~dlP~~L~~---~GGW~n~~--~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~~ 163 (469)
T PRK13511 109 EPFVTLHHFDTPEALHS---NGDWLNRE--NIDHFVRYAEFCFEEFPE---VKYWTTFNEIGP 163 (469)
T ss_pred EEEEEecCCCCcHHHHH---cCCCCCHH--HHHHHHHHHHHHHHHhCC---CCEEEEccchhh
Confidence 9999998754 655432 23655433 368899999999999999 333668999963
No 28
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.97 E-value=5.6e-05 Score=83.21 Aligned_cols=136 Identities=12% Similarity=0.035 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..+++++.|+++|+|+-|+.++|.-+.++. . .-.+...++.++++|+++.++||
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g---------------------~-----~~~N~~gl~~Y~~lid~l~~~GI 107 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTG---------------------Y-----GEVNEKGVEFYHKLFAECHKRHV 107 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCC---------------------C-----CCcCHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999997665521 0 11356789999999999999999
Q ss_pred EEEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC------------C-C
Q 008330 157 MVILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK------------Q-N 222 (570)
Q Consensus 157 ~VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~------------~-~ 222 (570)
..||.+|+.. |.|... ..||-+.. ..+.|.++-+.++++|++ |--+=.+|||.... . .
T Consensus 108 ~P~VTL~H~dlP~~L~~---~GGW~n~~--~v~~F~~YA~~~f~~fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 179 (467)
T TIGR01233 108 EPFVTLHHFDTPEALHS---NGDFLNRE--NIEHFIDYAAFCFEEFPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKY 179 (467)
T ss_pred EEEEeccCCCCcHHHHH---cCCCCCHH--HHHHHHHHHHHHHHHhCC---CCEEEEecchhhhhhccchhcccCCCccc
Confidence 9999998764 555422 23555432 478899999999999985 43466899996421 0 1
Q ss_pred -hhHHH-------HHHHHHHHHHHhcCCCcEE
Q 008330 223 -VKDWY-------RYMQLGAEAVHAANPEVLV 246 (570)
Q Consensus 223 -~~~W~-------~~~~~~~~aIr~~dp~~lI 246 (570)
...-+ ....++++++|+.+|+..|
T Consensus 180 ~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~I 211 (467)
T TIGR01233 180 DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEI 211 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 10111 1225778889988887443
No 29
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=97.86 E-value=4.8e-05 Score=83.91 Aligned_cols=109 Identities=10% Similarity=0.059 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.|++||+|+-|+.++|.-+.++. . +...++..++.++++|+++.++||.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G---------------------~----~~~~N~~gl~~Y~~lid~L~~~GI~ 123 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQG---------------------D----ELEPNEEGLQFYDDLFDECLKQGIE 123 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCC---------------------C----CCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 68999999999999999999997665521 0 0113567899999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.||.+|+.. |.|.... -.||-+.. ..+.|.++-+.++++|++.-. -+=.+|||.
T Consensus 124 P~VTL~H~dlP~~L~~~--yGGW~n~~--~i~~F~~YA~~~f~~fgdrVk--~WiT~NEp~ 178 (476)
T PRK09589 124 PVVTLSHFEMPYHLVTE--YGGWRNRK--LIDFFVRFAEVVFTRYKDKVK--YWMTFNEIN 178 (476)
T ss_pred EEEEecCCCCCHHHHHh--cCCcCChH--HHHHHHHHHHHHHHHhcCCCC--EEEEecchh
Confidence 999998754 5443211 13554432 468899999999999998622 244678875
No 30
>PLN02998 beta-glucosidase
Probab=97.85 E-value=4.5e-05 Score=84.40 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.|++||+|+-|+.++|.-+.++ |. .-.|...++.++++|+++.++||.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~---------------------G~-----g~vN~~gl~~Y~~lid~L~~~GIe 137 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPS---------------------GR-----GPINPKGLQYYNNLIDELITHGIQ 137 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcC---------------------CC-----CCcCHHHHHHHHHHHHHHHHcCCc
Confidence 6899999999999999999999766552 10 113667899999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
.||.+|+.. |.|.... -.||-+.+ ..+.|.++-+.++++|++.-. -+=.+|||..
T Consensus 138 P~VTL~H~dlP~~L~~~--yGGW~n~~--~v~~F~~YA~~~~~~fgdrVk--~WiT~NEP~~ 193 (497)
T PLN02998 138 PHVTLHHFDLPQALEDE--YGGWLSQE--IVRDFTAYADTCFKEFGDRVS--HWTTINEVNV 193 (497)
T ss_pred eEEEecCCCCCHHHHHh--hCCcCCch--HHHHHHHHHHHHHHHhcCcCC--EEEEccCcch
Confidence 999998754 5543211 13555433 468899999999999999622 3457888873
No 31
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.85 E-value=1.6e-05 Score=87.48 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.|+++|+|+.|+.++|..+.++. .....+...++.++++|+.+.++||.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g-------------------------~~g~~n~~~~~~Y~~~i~~l~~~gi~ 114 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDG-------------------------FEGKVNEEGLDFYRDLIDELLENGIE 114 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTS-------------------------SSSSS-HHHHHHHHHHHHHHHHTT-E
T ss_pred hhHHHHHHHhhccceeeeecchhheeecc-------------------------cccccCHhHhhhhHHHHHHHHhhccc
Confidence 58999999999999999999997766521 01224567899999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-------------CCh
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-------------QNV 223 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~-------------~~~ 223 (570)
.||.+|+.. |.|... -.||-+ + ...+.|.++-+.++++|++.-. -+=.+|||.... .+.
T Consensus 115 P~vtL~H~~~P~~l~~---~ggw~~-~-~~~~~F~~Ya~~~~~~~gd~V~--~w~T~NEp~~~~~~~y~~g~~~p~~~~~ 187 (455)
T PF00232_consen 115 PIVTLYHFDLPLWLED---YGGWLN-R-ETVDWFARYAEFVFERFGDRVK--YWITFNEPNVFALLGYLYGGFPPGRDSL 187 (455)
T ss_dssp EEEEEESS--BHHHHH---HTGGGS-T-HHHHHHHHHHHHHHHHHTTTBS--EEEEEETHHHHHHHHHTSSSSTTCSSTH
T ss_pred eeeeeeecccccceee---cccccC-H-HHHHHHHHHHHHHHHHhCCCcc--eEEeccccceeecccccccccccccccc
Confidence 999998753 555321 123333 2 2478999999999999999733 355789997521 111
Q ss_pred hHH-------HHHHHHHHHHHHhcCCCcEEEE
Q 008330 224 KDW-------YRYMQLGAEAVHAANPEVLVIL 248 (570)
Q Consensus 224 ~~W-------~~~~~~~~~aIr~~dp~~lIiV 248 (570)
... .....++++++|+..|+.-|-+
T Consensus 188 ~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi 219 (455)
T PF00232_consen 188 KAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGI 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEE
T ss_pred chhhHHHhhHHHHHHHHHHHHhhcccceEEec
Confidence 222 2233578899999988866644
No 32
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.85 E-value=2.2e-05 Score=69.27 Aligned_cols=93 Identities=27% Similarity=0.626 Sum_probs=66.3
Q ss_pred Cceeeeec---CCCCceecCCCCCC--CCccccCCcceeecccc-eEEeeccCC--ccceeccccC-C-CCCceeEeecc
Q 008330 419 TGLCVQRK---SFLDPLTLGPCTES--EAWSYTPHKTISLKGAY-FCLQAKHVG--KPAKLGIICT-D-CGSTWEIISDS 488 (570)
Q Consensus 419 tg~c~~~~---~~~~~~~~~~c~~~--~~W~~~~~~~~~~~~~~-~cl~a~~~g--~~~~~~~~c~-~-~~~~W~~~s~~ 488 (570)
+|+|+++. ....++.+.+|..+ +.|.++..+.|...... +||++.+.+ .++.+ ..|. . .+|+|.+..+.
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l-~~C~~~~~~Q~W~~~~~~ 89 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVL-WPCDSNSSNQRWKFDPDG 89 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTSBEEETTETTEEEEESSSSTTEBEEE-EETTTTGGGGBEEEETTS
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCCceeeccCcceEEEeeccCCCceEEE-eeccCCccCCeEEEcCCe
Confidence 99999997 22356999999995 68999999877765543 599999976 55566 8888 3 34899998844
Q ss_pred ccEEEEecCCCceEEEeecC--C-Cceeecce
Q 008330 489 KMHLSSKADNGTTVCLDVDS--S-NTIVTNTC 517 (570)
Q Consensus 489 ~~~~~~~~~~~~~~cld~~~--~-~~~~~~~c 517 (570)
. |... .+.+|||+.. + +.++.+.|
T Consensus 90 ~--i~n~---~s~~cL~~~~~~~~~~l~~~~c 116 (124)
T PF00652_consen 90 R--IRNK---NSGLCLDVKGGSDGNPLVLWPC 116 (124)
T ss_dssp B--EEET---TTTEEEEEGGGSTTEBEEEEE-
T ss_pred e--EEeC---CCCEEEEecCCCCCCEEEEEEC
Confidence 4 4323 3789999984 4 47777866
No 33
>PLN02814 beta-glucosidase
Probab=97.85 E-value=4.8e-05 Score=84.36 Aligned_cols=108 Identities=10% Similarity=0.054 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.||++|+|+-|+.++|.-+.++ |. .-.|+..++.++++|+++.++||.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~---------------------G~-----g~~N~~Gl~fY~~lId~l~~~GI~ 132 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPN---------------------GR-----GLINPKGLLFYKNLIKELRSHGIE 132 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcC---------------------CC-----CCCCHHHHHHHHHHHHHHHHcCCc
Confidence 6899999999999999999999766542 10 113667999999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.||.+|+.. |.|.... -.||-+.+ ..+.|.++-+.++++|++.-. -+=.+|||.
T Consensus 133 P~VTL~H~dlP~~L~~~--yGGW~n~~--~i~~F~~YA~~~f~~fgdrVk--~WiT~NEP~ 187 (504)
T PLN02814 133 PHVTLYHYDLPQSLEDE--YGGWINRK--IIEDFTAFADVCFREFGEDVK--LWTTINEAT 187 (504)
T ss_pred eEEEecCCCCCHHHHHh--cCCcCChh--HHHHHHHHHHHHHHHhCCcCC--EEEeccccc
Confidence 999998754 5553211 13554432 468899999999999999622 344688886
No 34
>PLN02849 beta-glucosidase
Probab=97.79 E-value=6.4e-05 Score=83.31 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.||++|+|+-|+.++|.-+.++ |. .-.|+..++.++++|+++.++||.
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~---------------------G~-----g~vN~~gl~fY~~lid~l~~~GI~ 134 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPN---------------------GR-----GSVNPKGLQFYKNFIQELVKHGIE 134 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcC---------------------CC-----CCCCHHHHHHHHHHHHHHHHcCCe
Confidence 6899999999999999999999766542 10 113567899999999999999999
Q ss_pred EEEecCCCC-CCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 158 VILDNHISK-PGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 158 VILD~H~~~-~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
.||.+|+.. |.|.... -.||-+.. ..+.|.++-+.++++|++.-. -+=.+|||..
T Consensus 135 P~VTL~H~dlP~~L~~~--yGGW~nr~--~v~~F~~YA~~~f~~fgDrVk--~WiT~NEP~~ 190 (503)
T PLN02849 135 PHVTLFHYDHPQYLEDD--YGGWINRR--IIKDFTAYADVCFREFGNHVK--FWTTINEANI 190 (503)
T ss_pred EEEeecCCCCcHHHHHh--cCCcCCch--HHHHHHHHHHHHHHHhcCcCC--EEEEecchhh
Confidence 999998754 5553211 13554432 478899999999999999632 2456888863
No 35
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.00085 Score=76.12 Aligned_cols=131 Identities=18% Similarity=0.272 Sum_probs=86.7
Q ss_pred CCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCc
Q 008330 50 NGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI 128 (570)
Q Consensus 50 ~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~ 128 (570)
+|+++.+.|.-.. |+-+.....++.++.||++|+|+||+ .++|..++++. |.
T Consensus 11 dg~~~~l~gG~y~-------p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e--------------------G~ 63 (673)
T COG1874 11 DGRRILLYGGDYY-------PERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEE--------------------GK 63 (673)
T ss_pred CCceeEEeccccC-------hHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccc--------------------cc
Confidence 7899999988643 22222244688999999999999999 89987766520 11
Q ss_pred ccCCCCCCCchHHHHHHHH-HHHHhcCCCEEEEecC--CCCCCccccCC------CCC------CCC-----CCCCCCHH
Q 008330 129 QSNNPSIVDLPLIKAFQAV-VASLGNNNVMVILDNH--ISKPGWCCSNS------DGN------GFF-----GDQYFNPD 188 (570)
Q Consensus 129 ~~~nP~~~~~t~l~~ld~v-V~~a~~~Gl~VILD~H--~~~~~w~~~~~------dgn------g~~-----~d~~~~~~ 188 (570)
.+-+ -+|.+ ++.|.+.|+||||-.- ...|.|-...- +.+ +-+ .+. +..+
T Consensus 64 -------fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~-~Yr~ 132 (673)
T COG1874 64 -------FDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSP-VYRE 132 (673)
T ss_pred -------cCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccH-HHHH
Confidence 1222 34455 9999999999999762 23345532110 001 101 111 1234
Q ss_pred HHHHHHHHHHHH-hCCCCcEEEEeccCCCCC
Q 008330 189 LWIKGLTKMATI-FNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 189 ~~~~~w~~iA~r-yk~~p~Vig~dL~NEP~~ 218 (570)
....+.++|++| |++.++|+++-+=||=.+
T Consensus 133 ~~~~i~~~irer~~~~~~~v~~w~~dneY~~ 163 (673)
T COG1874 133 YLDRILQQIRERLYGNGPAVITWQNDNEYGG 163 (673)
T ss_pred HHHHHHHHHHHHHhccCCceeEEEccCccCC
Confidence 455678889999 999999999999998544
No 36
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.072 Score=53.60 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHH---hCCCCcEEEEeccCCCCCC
Q 008330 143 AFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATI---FNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 143 ~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~r---yk~~p~Vig~dL~NEP~~~ 219 (570)
.|+.+..++.+.|++|+|-+.-.+ | -.++.++ ++... |.+.+.|..+-+-||.-..
T Consensus 88 ~le~v~pAa~~~g~kv~lGiw~td--------d-------~~~~~~~------til~ay~~~~~~d~v~~v~VGnEal~r 146 (305)
T COG5309 88 TLENVLPAAEASGFKVFLGIWPTD--------D-------IHDAVEK------TILSAYLPYNGWDDVTTVTVGNEALNR 146 (305)
T ss_pred hhhhhHHHHHhcCceEEEEEeecc--------c-------hhhhHHH------HHHHHHhccCCCCceEEEEechhhhhc
Confidence 378899999999999999654321 1 1122221 23333 4566789999999998543
Q ss_pred C-CChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCcchhhhhcccCcCCCCCEEEEEeecCCCCCCCCCCCCCcchhh
Q 008330 220 K-QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDLSFVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCG 298 (570)
Q Consensus 220 ~-~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~dl~~~~~~p~~l~~~~nlVys~H~Y~~~~~~~w~~~~~~~~~~ 298 (570)
+ -+..+.-.++.++-.++.+.+-+..|.--. .|.- +.++|.-...-+-++...|.|..... ..+.-.
T Consensus 147 ~~~tasql~~~I~~vrsav~~agy~gpV~T~d-sw~~----~~~np~l~~~SDfia~N~~aYwd~~~-------~a~~~~ 214 (305)
T COG5309 147 NDLTASQLIEYIDDVRSAVKEAGYDGPVTTVD-SWNV----VINNPELCQASDFIAANAHAYWDGQT-------VANAAG 214 (305)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCceeecc-ccee----eeCChHHhhhhhhhhcccchhccccc-------hhhhhh
Confidence 3 256788888888878888776665533221 1211 11122111123567777888853221 000011
Q ss_pred H-HHHHHHHHHHHHHh-cCCCeEEeccccCCCCCCc--------chHHHHHHHHHHHHHCCCceEE
Q 008330 299 R-VVDNVMRLSGFLLE-QGWPLFVSEFGADLRGNNV--------NDNRYLNCFFGVAAELDWDWAL 354 (570)
Q Consensus 299 ~-~~~~~~~~~g~l~~-~g~Pv~iGEFG~~~~~~~~--------~~~~~~~~~~~~~~~~gigw~~ 354 (570)
. +.+.+.+... .. ..++++|+|-|.+.++... +...+++.++.-+++.|++-++
T Consensus 215 ~f~~~q~e~vqs--a~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fv 278 (305)
T COG5309 215 TFLLEQLERVQS--ACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFV 278 (305)
T ss_pred HHHHHHHHHHHH--hcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEE
Confidence 1 1122222111 11 3489999999999876532 2468888889889999998653
No 37
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=97.03 E-value=0.0022 Score=55.76 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCCccccC----Cc--ceeecccceEEeeccC----CccceeccccC-CCCCceeEeeccccEEEEecCCCceEEEeecC
Q 008330 440 SEAWSYTP----HK--TISLKGAYFCLQAKHV----GKPAKLGIICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDS 508 (570)
Q Consensus 440 ~~~W~~~~----~~--~~~~~~~~~cl~a~~~----g~~~~~~~~c~-~~~~~W~~~s~~~~~~~~~~~~~~~~cld~~~ 508 (570)
+++|.+++ .+ .|+-+.+++||++.+. |.++.+ ..|. .++|+|++...++.+...+.. .+.+|||+.+
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~-~~~~~~~~Q~W~i~~~~~g~y~I~n~-~s~~~Ldv~~ 79 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQ-WTCNGNDNQQWKIEPVGDGYYRIRNK-NSGKVLDVAG 79 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEE-EESSSSGGGEEEEEESTTSEEEEEET-STTEEEEEGG
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEE-ecCCCCcCcEEEEEEecCCeEEEEEC-CCCcEEEECC
Confidence 45777765 33 3555679999999885 444444 7776 788999998888765555433 6789999973
Q ss_pred ----CC-ceeecce
Q 008330 509 ----SN-TIVTNTC 517 (570)
Q Consensus 509 ----~~-~~~~~~c 517 (570)
+| +|+.+.|
T Consensus 80 ~~~~~g~~v~~~~~ 93 (105)
T PF14200_consen 80 GSTANGTNVQQWEY 93 (105)
T ss_dssp GSSSTTEBEEEEE-
T ss_pred CCCCCCCEEEEEeC
Confidence 45 6776777
No 38
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.95 E-value=0.12 Score=55.15 Aligned_cols=104 Identities=14% Similarity=0.039 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCccccCCCC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCC-cEEEEeccCCCCCCC
Q 008330 146 AVVASLGNNNVMVILDNHISKPGWCCSNSDG----NGFFGDQYFNPDLWIKGLTKMATIFNGVR-NVVGMSLRNELRGPK 220 (570)
Q Consensus 146 ~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dg----ng~~~d~~~~~~~~~~~w~~iA~ryk~~p-~Vig~dL~NEP~~~~ 220 (570)
.++++|+++|+..++-+-.++|.|-+.+... .+--+-+.-..+.|..++..++++|+..- ++--++.+|||...+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 4789999999999998888888775322111 01000011236889999999999995542 355689999998653
Q ss_pred ----C-----ChhHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 221 ----Q-----NVKDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 221 ----~-----~~~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
| +.++-.+.++.+..++++.+.+..|.+.
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~ 225 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISAC 225 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEec
Confidence 1 2344456677777888888887766663
No 39
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.88 E-value=0.013 Score=58.98 Aligned_cols=134 Identities=17% Similarity=0.203 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCCCcEEEEeccCCCCCCCC---ChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC-----cchh----h
Q 008330 193 GLTKMATIFNGVRNVVGMSLRNELRGPKQ---NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-----DLSF----V 260 (570)
Q Consensus 193 ~w~~iA~ryk~~p~Vig~dL~NEP~~~~~---~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~-----dl~~----~ 260 (570)
.++.+.+. +. .+--+..+|||....+ +.++-.+...+.++.+|. +...|+-....+.. .+.. +
T Consensus 55 ~~~~v~~~-~~--~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~g~~Wl~~F~ 129 (239)
T PF11790_consen 55 WLANVQNA-HP--GSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPGGLDWLSQFL 129 (239)
T ss_pred HHHHHHhh-cc--CccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCCccHHHHHHH
Confidence 34555555 22 2223457899987653 222222223333344442 55555444443321 2222 2
Q ss_pred hhcccCcCCCCCEEEEEeecCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCC---CCcchHHH
Q 008330 261 RNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRG---NNVNDNRY 337 (570)
Q Consensus 261 ~~~p~~l~~~~nlVys~H~Y~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~---~~~~~~~~ 337 (570)
..-+ ....--++++|+|... ...+...+.+.. ...+.||+|+|||+.... .......|
T Consensus 130 ~~~~---~~~~~D~iavH~Y~~~-------------~~~~~~~i~~~~---~~~~kPIWITEf~~~~~~~~~~~~~~~~f 190 (239)
T PF11790_consen 130 SACA---RGCRVDFIAVHWYGGD-------------ADDFKDYIDDLH---NRYGKPIWITEFGCWNGGSQGSDEQQASF 190 (239)
T ss_pred Hhcc---cCCCccEEEEecCCcC-------------HHHHHHHHHHHH---HHhCCCEEEEeecccCCCCCCCHHHHHHH
Confidence 2211 0112347899999321 122333333211 225699999999986421 22335689
Q ss_pred HHHHHHHHHHCCC
Q 008330 338 LNCFFGVAAELDW 350 (570)
Q Consensus 338 ~~~~~~~~~~~gi 350 (570)
++.++.++++...
T Consensus 191 l~~~~~~ld~~~~ 203 (239)
T PF11790_consen 191 LRQALPWLDSQPY 203 (239)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999988753
No 40
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.094 Score=54.26 Aligned_cols=164 Identities=14% Similarity=0.291 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhcCCCEEE---EecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 141 IKAFQAVVASLGNNNVMVI---LDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VI---LD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
|++-|++++.|++|||.+= |=.|...|.|..+.. +..+ ...+...+....|+.|||+. |+.+|+.|||.
T Consensus 81 Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~e-----~~~~-~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE~v 152 (345)
T COG3693 81 FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFGDE-----LSKE-ALAKMVEEHIKTVVGRYKGS--VASWDVVNEAV 152 (345)
T ss_pred ccchHHHHHHHHHcCCeeccceeeecccCCchhhccc-----cChH-HHHHHHHHHHHHHHHhccCc--eeEEEeccccc
Confidence 6778999999999999872 455666666643211 0001 11344456778899999998 88999999997
Q ss_pred CCCC--ChhHHHH------HHHHHHHHHHhcCCCcEEEEeCCCCCCc----------chhhhhcccCcCCCCCEEEEEee
Q 008330 218 GPKQ--NVKDWYR------YMQLGAEAVHAANPEVLVILSGLNFDKD----------LSFVRNQAVNLTFTGKLVFEAHW 279 (570)
Q Consensus 218 ~~~~--~~~~W~~------~~~~~~~aIr~~dp~~lIiVeG~~w~~d----------l~~~~~~p~~l~~~~nlVys~H~ 279 (570)
...+ ..+.|+. +++.+...-|+++|+.-.++-...-..+ +..+..+. ++. +-+=.--|+
T Consensus 153 dd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG--~pI-DgiG~QsH~ 229 (345)
T COG3693 153 DDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKG--API-DGIGIQSHF 229 (345)
T ss_pred CCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCC--CCc-cceeeeeee
Confidence 7422 2345664 6677778889999998888755321111 01111111 122 456667773
Q ss_pred cCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCCC
Q 008330 280 YGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGN 330 (570)
Q Consensus 280 Y~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~ 330 (570)
=.... ..+.....+ ..+.+.|.|++|+|+-+...++
T Consensus 230 ~~~~~-----------~~~~~~~a~----~~~~k~Gl~i~VTELD~~~~~P 265 (345)
T COG3693 230 SGDGP-----------SIEKMRAAL----LKFSKLGLPIYVTELDMSDYTP 265 (345)
T ss_pred cCCCC-----------CHHHHHHHH----HHHhhcCCCceEEEeeeeccCC
Confidence 22111 112222222 2233469999999998876443
No 41
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.83 E-value=0.021 Score=54.32 Aligned_cols=140 Identities=8% Similarity=0.101 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccC-ccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATND-SLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~-~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
...++.++.|+++|+++|=|-+.- ..+. .|+ .. . .++. .....-+.|+.++++|.++
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~--~~~~~~yp-----s~-------------~-~~~~-~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTG--YGGFAFYP-----SK-------------L-SPGG-FYMPPVDLLEMILDAADKY 77 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEee--cCCcccCC-----cc-------------c-cCcc-ccCCcccHHHHHHHHHHHc
Confidence 346899999999999999764331 1110 010 00 0 0111 1112345699999999999
Q ss_pred CCEEEEecCCCCCCccccCCCCCCCCCCCCCC--HHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHH
Q 008330 155 NVMVILDNHISKPGWCCSNSDGNGFFGDQYFN--PDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQL 232 (570)
Q Consensus 155 Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~--~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~ 232 (570)
||+|++-+...+. ||.+...+ .+.-...-+.|+++|+.++.+.|+=|=.|+.... ... ....+.
T Consensus 78 Gmkv~~Gl~~~~~-----------~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~--~~~-~~~~~~ 143 (166)
T PF14488_consen 78 GMKVFVGLYFDPD-----------YWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN--WNA-PERFAL 143 (166)
T ss_pred CCEEEEeCCCCch-----------hhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc--cch-HHHHHH
Confidence 9999998876543 33321111 1122356778899999999999999999997652 111 234466
Q ss_pred HHHHHHhcCCCcEEEEeCC
Q 008330 233 GAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 233 ~~~aIr~~dp~~lIiVeG~ 251 (570)
..+.++++.|+.+|+|++.
T Consensus 144 l~~~lk~~s~~~Pv~ISpf 162 (166)
T PF14488_consen 144 LGKYLKQISPGKPVMISPF 162 (166)
T ss_pred HHHHHHHhCCCCCeEEecC
Confidence 7788888888999999874
No 42
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=96.74 E-value=0.0021 Score=56.09 Aligned_cols=70 Identities=21% Similarity=0.394 Sum_probs=52.7
Q ss_pred eeCCCCceeeeecCCC-CceecCCCCC---CCCccccCCcceeecccceEEeeccCCcc-ceeccccC-CCCCceeE
Q 008330 414 IYHPATGLCVQRKSFL-DPLTLGPCTE---SEAWSYTPHKTISLKGAYFCLQAKHVGKP-AKLGIICT-DCGSTWEI 484 (570)
Q Consensus 414 ~~~~~tg~c~~~~~~~-~~~~~~~c~~---~~~W~~~~~~~~~~~~~~~cl~a~~~g~~-~~~~~~c~-~~~~~W~~ 484 (570)
+++. +++|+++.+.. .++.+..|.. +++|.+..++.|....+++||++.+.... ......|. .++|+|.+
T Consensus 41 ~~~~-~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~~~Q~W~~ 116 (117)
T smart00458 41 IRIA-TDLCLTANGNTGSTVTLYSCDGDADNQYWTVNKDGTIRNPDSGLCLDVKDGNTGTKVILWTCNGNPNQKWIF 116 (117)
T ss_pred EEec-CCccCccCCCCCCEEEEEECCCCCcCCEEEECCCeeEEeCCCCEEEecCCCCCCceEEEEeCCCCccccEEe
Confidence 3444 88999985542 3689999976 37999998888887789999999876442 23347788 67899986
No 43
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=96.66 E-value=0.0028 Score=55.14 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=51.7
Q ss_pred CceeeeecCC--CCceecCCCCC---CCCccccCCcceeecccceEEeeccC---CccceeccccC-CCCCceeE
Q 008330 419 TGLCVQRKSF--LDPLTLGPCTE---SEAWSYTPHKTISLKGAYFCLQAKHV---GKPAKLGIICT-DCGSTWEI 484 (570)
Q Consensus 419 tg~c~~~~~~--~~~~~~~~c~~---~~~W~~~~~~~~~~~~~~~cl~a~~~---g~~~~~~~~c~-~~~~~W~~ 484 (570)
+++|+++.+. ..++.+.+|.. +++|.+.+.+.|..+.+++||++.+. |.++.+ ..|. ..+|+|++
T Consensus 51 ~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~i~~~~~~~cl~~~~~~~~~~~v~~-~~c~~~~~Q~W~~ 124 (124)
T cd00161 51 SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGTIRNLKSGKCLDVKGGNTNGTNLIL-WTCDGGPNQKWKF 124 (124)
T ss_pred CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcEEEECCCCeEEeCCCCCCCCCEEEE-EeCCCCccceEeC
Confidence 8999998543 24689999987 47999998888887778999999886 455555 8898 77899974
No 44
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=96.57 E-value=0.0033 Score=55.27 Aligned_cols=70 Identities=24% Similarity=0.560 Sum_probs=55.1
Q ss_pred ceeeCCCCceeeeecCCC--CceecCCCCCC---CCccccCCcceeecccceEEeecc--CCccceeccccC-CCCCce
Q 008330 412 KVIYHPATGLCVQRKSFL--DPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKH--VGKPAKLGIICT-DCGSTW 482 (570)
Q Consensus 412 ~~~~~~~tg~c~~~~~~~--~~~~~~~c~~~---~~W~~~~~~~~~~~~~~~cl~a~~--~g~~~~~~~~c~-~~~~~W 482 (570)
.+.......+|+.+.+.. .++.+.+|..+ +.|.+.+.+.|+-..+++||+..+ .+.++.+ ..|. +++|+|
T Consensus 47 ~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~~i~n~~s~~cL~~~~~~~~~~l~~-~~c~~~~~Q~W 124 (124)
T PF00652_consen 47 QIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDGRIRNKNSGLCLDVKGGSDGNPLVL-WPCNGSPNQQW 124 (124)
T ss_dssp BEEETTETTEEEEESSSSTTEBEEEEETTTTGGGGBEEEETTSBEEETTTTEEEEEGGGSTTEBEEE-EE-TSSGGGBE
T ss_pred ceeeccCcceEEEeeccCCCceEEEeeccCCccCCeEEEcCCeeEEeCCCCEEEEecCCCCCCEEEE-EECCCCccccC
Confidence 455555556699986552 46999999986 699999977888777999999999 7888888 5887 778988
No 45
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=96.47 E-value=0.0031 Score=54.83 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=56.1
Q ss_pred ccceeeCCCCceeeeecCC----CCceecCCCCCC--CCccccCCc----ceeecccceEEeeccC----Cccceecccc
Q 008330 410 LHKVIYHPATGLCVQRKSF----LDPLTLGPCTES--EAWSYTPHK----TISLKGAYFCLQAKHV----GKPAKLGIIC 475 (570)
Q Consensus 410 ~~~~~~~~~tg~c~~~~~~----~~~~~~~~c~~~--~~W~~~~~~----~~~~~~~~~cl~a~~~----g~~~~~~~~c 475 (570)
.++.|....||+|+++.+. .+++.+++|.++ ++|...+.+ .|.-+.+++||+..+. |.++.+ +.|
T Consensus 15 g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~-~~~ 93 (105)
T PF14200_consen 15 GYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQ-WEY 93 (105)
T ss_dssp TEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEE-EE-
T ss_pred CEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEE-EeC
Confidence 3577778899999999543 356999999764 799998555 4666789999999875 455555 777
Q ss_pred -C-CCCCceeE
Q 008330 476 -T-DCGSTWEI 484 (570)
Q Consensus 476 -~-~~~~~W~~ 484 (570)
. +++|+|++
T Consensus 94 ~~~~~~Q~W~l 104 (105)
T PF14200_consen 94 DNGSDNQQWKL 104 (105)
T ss_dssp STSSGGGEEEE
T ss_pred CCCCccCEEEe
Confidence 4 88999987
No 46
>PLN02361 alpha-amylase
Probab=96.04 E-value=0.021 Score=61.73 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred CCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCc
Q 008330 49 ENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI 128 (570)
Q Consensus 49 ~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~ 128 (570)
..|.+|.|.|.||..+. +.|-+.+.+-++.|+++||++|=||=..+......|.. .-.
T Consensus 8 ~~~~~v~lQ~F~W~~~~------~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~----------------~d~ 65 (401)
T PLN02361 8 RNGREILLQAFNWESHK------HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLP----------------QNL 65 (401)
T ss_pred cCCCcEEEEEEeccCCc------cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCc----------------ccc
Confidence 46899999999997542 23446678889999999999999954433222211210 012
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEec---CC
Q 008330 129 QSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDN---HI 164 (570)
Q Consensus 129 ~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~---H~ 164 (570)
+..||.+-. .+.|+.+|++|.++||+||+|+ |.
T Consensus 66 y~~~~~~Gt---~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 66 YSLNSAYGS---EHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred cccCcccCC---HHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 445666543 4669999999999999999994 75
No 47
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.033 Score=61.17 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++.|+++|+++-|+.++|..+.+. .+.. .-.++..++.+..+|+++.++||.
T Consensus 93 ykeDv~Lmk~lgv~afRFSIsWSRIlP~----G~~~--------------------~gVN~~Gi~fY~~LI~eL~~nGI~ 148 (524)
T KOG0626|consen 93 YKEDVKLMKELGVDAFRFSISWSRILPN----GRLT--------------------GGVNEAGIQFYNNLIDELLANGIE 148 (524)
T ss_pred hHHHHHHHHHcCCCeEEEEeehHhhCCC----CCcC--------------------CCcCHHHHHHHHHHHHHHHHcCCe
Confidence 5889999999999999999999776552 1110 113567899999999999999999
Q ss_pred EEEec-CCCCCCccccCCCC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 158 VILDN-HISKPGWCCSNSDG-NGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 158 VILD~-H~~~~~w~~~~~dg-ng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.++.+ |.+-|.+.. |. .||-+.+ ..+.|.++=+-.=++|.+. |=-+=.+|||.
T Consensus 149 P~VTLfHwDlPq~Le---DeYgGwLn~~--ivedF~~yA~~CF~~fGDr--VK~WiT~NEP~ 203 (524)
T KOG0626|consen 149 PFVTLFHWDLPQALE---DEYGGWLNPE--IVEDFRDYADLCFQEFGDR--VKHWITFNEPN 203 (524)
T ss_pred EEEEEecCCCCHHHH---HHhccccCHH--HHHHHHHHHHHHHHHhccc--ceeeEEecccc
Confidence 99986 545454321 21 2444432 2455666555566677775 43455677776
No 48
>PLN02784 alpha-amylase
Probab=95.84 E-value=0.035 Score=64.48 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=66.4
Q ss_pred cCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccC
Q 008330 48 DENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGG 127 (570)
Q Consensus 48 d~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g 127 (570)
..+|..+.|+|.+|..+. .|.|.+.+.+-++.|+++||++|=||=.........|.. ..
T Consensus 498 ~~~~~eVmlQgF~Wds~~-----dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p----------------~D 556 (894)
T PLN02784 498 TGSGFEILCQGFNWESHK-----SGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMP----------------KD 556 (894)
T ss_pred ccCCceEEEEeEEcCcCC-----CCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCc----------------cc
Confidence 457889999999997653 355667788889999999999999955433222211210 11
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEe---cCCC
Q 008330 128 IQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILD---NHIS 165 (570)
Q Consensus 128 ~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD---~H~~ 165 (570)
.+..|+.+.. .+-|+.+|++|.++||+||+| +|..
T Consensus 557 ~y~lds~yGT---~~ELk~LI~a~H~~GIkVIlDiViNH~a 594 (894)
T PLN02784 557 LYNLNSRYGT---IDELKDLVKSFHEVGIKVLGDAVLNHRC 594 (894)
T ss_pred ccccCcCcCC---HHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 2445665543 456999999999999999999 4754
No 49
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.69 E-value=0.23 Score=57.12 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCcEEEe-ccccccccc-CccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATN-DSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~-~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+.+++.|+++|+|+|=| |+....... -.|. ....+..+|.+.. .+.|+++|++|.++||
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~----------------~~~y~~i~~~~Gt---~~d~k~lv~~~H~~Gi 234 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQ----------------LTGYFAPTSRYGT---PEDFMYLVDALHQNGI 234 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCCCCCCCC----------------CcCcCcCCCCCCC---HHHHHHHHHHHHHCCC
Confidence 34568999999999998 664321110 0111 0122455666543 4679999999999999
Q ss_pred EEEEe---cCCC
Q 008330 157 MVILD---NHIS 165 (570)
Q Consensus 157 ~VILD---~H~~ 165 (570)
.|||| +|..
T Consensus 235 ~VilD~V~nH~~ 246 (633)
T PRK12313 235 GVILDWVPGHFP 246 (633)
T ss_pred EEEEEECCCCCC
Confidence 99999 4654
No 50
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.064 Score=58.85 Aligned_cols=173 Identities=18% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCc
Q 008330 49 ENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI 128 (570)
Q Consensus 49 ~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~ 128 (570)
-+|.|+.|+|.||.-.. +..+.....-++-.++.+++.|+|++|+ |.- |+
T Consensus 332 in~~pvflkg~nwip~s--~f~dr~t~~~~~~LL~Sv~e~~MN~lRV-WGG---------------------------Gv 381 (867)
T KOG2230|consen 332 INDEPVFLKGTNWIPVS--MFRDRENIAKTEFLLDSVAEVGMNMLRV-WGG---------------------------GV 381 (867)
T ss_pred EcCcEEEeecCCccChH--HHHhhHHHHHHHHHHHHHHHhCcceEEE-ecC---------------------------cc
Confidence 37899999999996321 0000000011355688899999999998 221 22
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHH----HHHHHHHHHhCCC
Q 008330 129 QSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWI----KGLTKMATIFNGV 204 (570)
Q Consensus 129 ~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~----~~w~~iA~ryk~~ 204 (570)
|+ -|..-..|.+.||.|--|+-- .|+--. ..++|+ +-.++=|.|.+.+
T Consensus 382 YE-------------sd~FY~lad~lGilVWQD~MF-----ACAlYP----------t~~eFl~sv~eEV~yn~~Rls~H 433 (867)
T KOG2230|consen 382 YE-------------SDYFYQLADSLGILVWQDMMF-----ACALYP----------TNDEFLSSVREEVRYNAMRLSHH 433 (867)
T ss_pred cc-------------chhHHHHhhhccceehhhhHH-----Hhhccc----------CcHHHHHHHHHHHHHHHHhhccC
Confidence 22 134556788999999888653 243211 123333 3345668899999
Q ss_pred CcEEEEeccCCCCCCC-------------CChhHHHHHHHH-HHHHHHhcCCCcEEEEeCCCCCCcch---hhhhcccCc
Q 008330 205 RNVVGMSLRNELRGPK-------------QNVKDWYRYMQL-GAEAVHAANPEVLVILSGLNFDKDLS---FVRNQAVNL 267 (570)
Q Consensus 205 p~Vig~dL~NEP~~~~-------------~~~~~W~~~~~~-~~~aIr~~dp~~lIiVeG~~w~~dl~---~~~~~p~~l 267 (570)
|.|+.|.--||-...- ...++..-++++ +.+.....+|.++.|++.+.-|..-. ++..+|
T Consensus 434 pSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPsNG~ete~e~~VS~NP--- 510 (867)
T KOG2230|consen 434 PSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPSNGKETEPENYVSSNP--- 510 (867)
T ss_pred CeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCCCCcccCccccccCCC---
Confidence 9999999999976531 012233334444 33334456777778887765443221 233333
Q ss_pred CCCCCEEEEEeecCCCC
Q 008330 268 TFTGKLVFEAHWYGFTD 284 (570)
Q Consensus 268 ~~~~nlVys~H~Y~~~~ 284 (570)
.+|--=++|+|....
T Consensus 511 --~dn~~GDVHfYdy~~ 525 (867)
T KOG2230|consen 511 --QDNQNGDVHFYDYTK 525 (867)
T ss_pred --ccccCCceEeeehhh
Confidence 234444899997543
No 51
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.64 E-value=0.43 Score=49.99 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=97.1
Q ss_pred HhcCCCEEEEecCCCCCCccccCCCCCCCCCC--CCCCHHHHHHHHHHHHHHhCCC-CcEEEEeccCCCCCCCC------
Q 008330 151 LGNNNVMVILDNHISKPGWCCSNSDGNGFFGD--QYFNPDLWIKGLTKMATIFNGV-RNVVGMSLRNELRGPKQ------ 221 (570)
Q Consensus 151 a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d--~~~~~~~~~~~w~~iA~ryk~~-p~Vig~dL~NEP~~~~~------ 221 (570)
+.++|+.|+-.-...+ .|-....+.++=-.. ++..-..|.+++......++++ -++.++.+-|||.....
T Consensus 111 ~in~g~ivfASPWspP-a~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~w 189 (433)
T COG5520 111 AINPGMIVFASPWSPP-ASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWW 189 (433)
T ss_pred hcCCCcEEEecCCCCc-hhhhhccCcCCccccccchhHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccc
Confidence 7889999988755442 332111121210000 1111245666777777777765 46889999999976521
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC-cch-hhhhcccCcCCCCCEEEEEeecCCCCC-CCCCCCCCcchhh
Q 008330 222 NVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDK-DLS-FVRNQAVNLTFTGKLVFEAHWYGFTDG-QAWVDGNPNQVCG 298 (570)
Q Consensus 222 ~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~-dl~-~~~~~p~~l~~~~nlVys~H~Y~~~~~-~~w~~~~~~~~~~ 298 (570)
+.++-.++|. +..++++.+.-|++....|+. +++ ++-++|-.+ ..-.++..|+|+-.++ |+..
T Consensus 190 tpQe~~rF~~---qyl~si~~~~rV~~pes~~~~~~~~dp~lnDp~a~--a~~~ilg~H~Ygg~v~~~p~~--------- 255 (433)
T COG5520 190 TPQEELRFMR---QYLASINAEMRVIIPESFKDLPNMSDPILNDPKAL--ANMDILGTHLYGGQVSDQPYP--------- 255 (433)
T ss_pred cHHHHHHHHH---HhhhhhccccEEecchhcccccccccccccCHhHh--cccceeEeeecccccccchhh---------
Confidence 2233334443 445556666667765444432 111 111222221 2346889999986654 1100
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCcchHHHHHHHHHHHH---HCCC-ceEEeccCcee
Q 008330 299 RVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRYLNCFFGVAA---ELDW-DWALWTLVGSY 361 (570)
Q Consensus 299 ~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~~~~~~~~~~~~~~~~---~~gi-gw~~W~~~G~y 361 (570)
.+.+ .-.+.-||++|.-.+..+++-.+...+.-...... +-|. ++.+|.+..+|
T Consensus 256 --------lak~-~~~gKdlwmte~y~~esd~~s~dr~~~~~~~hi~~gm~~gg~~ayv~W~i~~~~ 313 (433)
T COG5520 256 --------LAKQ-KPAGKDLWMTECYPPESDPNSADREALHVALHIHIGMTEGGFQAYVWWNIRLDY 313 (433)
T ss_pred --------HhhC-CCcCCceEEeecccCCCCCCcchHHHHHHHHHHHhhccccCccEEEEEEEeecc
Confidence 0000 01467799999988877664334323333222222 2233 57788876444
No 52
>PLN00196 alpha-amylase; Provisional
Probab=95.54 E-value=0.056 Score=59.05 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=59.6
Q ss_pred CCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCccc
Q 008330 51 GHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQS 130 (570)
Q Consensus 51 G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~ 130 (570)
+..|.|.|.+|..+. ..|-|-+.+.+-++.|+++||++|=||=..+......|.. .-.+.
T Consensus 23 ~~~v~~Q~F~W~~~~----~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~----------------~D~y~ 82 (428)
T PLN00196 23 AGQVLFQGFNWESWK----QNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMP----------------GRLYD 82 (428)
T ss_pred CCCEEEEeeccCCCC----CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCc----------------cccCC
Confidence 345679999996543 2333445577889999999999999954333222111210 01133
Q ss_pred CCC-CCCCchHHHHHHHHHHHHhcCCCEEEEe---cCCC
Q 008330 131 NNP-SIVDLPLIKAFQAVVASLGNNNVMVILD---NHIS 165 (570)
Q Consensus 131 ~nP-~~~~~t~l~~ld~vV~~a~~~Gl~VILD---~H~~ 165 (570)
.+| .+-. .+.|+++|++|.++||+||+| +|..
T Consensus 83 ld~~~fGt---~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 83 LDASKYGN---EAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CCcccCCC---HHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 443 3322 356999999999999999999 4654
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.27 E-value=0.39 Score=56.16 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCcEEEe-ccccccccc-CccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 80 MLSKRVVDMGFNCVRL-TWPLYLATN-DSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 80 ~~~~~i~~~GfN~VRl-Pi~~~~~~~-~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++.|+++|+|+|=| |+....... -.|. ....+..+|.+.. .+.|+++|++|.++||.
T Consensus 270 ~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~----------------~~~y~ai~~~~Gt---~~dfk~lV~~~H~~Gi~ 330 (726)
T PRK05402 270 QLIPYVKEMGFTHVELLPIAEHPFDGSWGYQ----------------PTGYYAPTSRFGT---PDDFRYFVDACHQAGIG 330 (726)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCC----------------cccCCCcCcccCC---HHHHHHHHHHHHHCCCE
Confidence 4468889999999998 664321110 0011 0122345666543 56799999999999999
Q ss_pred EEEec---CCC
Q 008330 158 VILDN---HIS 165 (570)
Q Consensus 158 VILD~---H~~ 165 (570)
||||+ |..
T Consensus 331 VilD~V~NH~~ 341 (726)
T PRK05402 331 VILDWVPAHFP 341 (726)
T ss_pred EEEEECCCCCC
Confidence 99994 654
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.07 E-value=0.42 Score=54.75 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCcEEEe-ccccccccc-CccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATN-DSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~-~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+.+++.|+++|+|+|=| |+....... -.|. ....+..+|.+.. .+.|+++|++|.++||
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~----------------~~~y~~~~~~~Gt---~~dlk~lV~~~H~~Gi 220 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQ----------------VTGYYAPTSRFGT---PDDFMYFVDACHQAGI 220 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCC----------------cccCcccccccCC---HHHHHHHHHHHHHCCC
Confidence 34458889999999999 775421110 0111 0122344555543 4679999999999999
Q ss_pred EEEEec---CCC
Q 008330 157 MVILDN---HIS 165 (570)
Q Consensus 157 ~VILD~---H~~ 165 (570)
+||||+ |..
T Consensus 221 ~VilD~V~NH~~ 232 (613)
T TIGR01515 221 GVILDWVPGHFP 232 (613)
T ss_pred EEEEEecccCcC
Confidence 999994 654
No 55
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.25 Score=55.60 Aligned_cols=142 Identities=16% Similarity=0.196 Sum_probs=84.4
Q ss_pred CCCeEecCCeEEcCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhh
Q 008330 36 GLPLSTNSRWIVDENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQS 115 (570)
Q Consensus 36 ~~~L~t~G~~IVd~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s 115 (570)
+..+..+++.++ .+|+|+.+-.....-... + ....++.++++++.|+|+|-..+.|.+.++.
T Consensus 17 ~~~v~yd~~~~~-idG~r~~~isGsIHY~R~---~----pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~---------- 78 (649)
T KOG0496|consen 17 SFNVTYDKRSLL-IDGQRFILISGSIHYPRS---T----PEMWPDLIKKAKAGGLNVIQTYVFWNLHEPS---------- 78 (649)
T ss_pred eeEEecccccee-ecCCeeEEEEeccccccC---C----hhhhHHHHHHHHhcCCceeeeeeecccccCC----------
Confidence 456777777766 478888876554322211 1 1235788999999999999998888765541
Q ss_pred hhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCC--CCCCCC-----------C
Q 008330 116 FQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSD--GNGFFG-----------D 182 (570)
Q Consensus 116 ~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~d--gng~~~-----------d 182 (570)
+|.+ +-+..--+.+.|..+.+.|+||||-.- | +-|+.-+ |-.||- |
T Consensus 79 ----------~g~y-------~FsG~~DlvkFikl~~~~GLyv~LRiG---P-yIcaEw~~GG~P~wL~~~pg~~~Rt~n 137 (649)
T KOG0496|consen 79 ----------PGKY-------DFSGRYDLVKFIKLIHKAGLYVILRIG---P-YICAEWNFGGLPWWLRNVPGIVFRTDN 137 (649)
T ss_pred ----------CCcc-------cccchhHHHHHHHHHHHCCeEEEecCC---C-eEEecccCCCcchhhhhCCceEEecCC
Confidence 1111 111122256779999999999999643 1 2222111 113441 1
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCC-CcEEEEeccCCCC
Q 008330 183 QYFNPDLWIKGLTKMATI----FNGV-RNVVGMSLRNELR 217 (570)
Q Consensus 183 ~~~~~~~~~~~w~~iA~r----yk~~-p~Vig~dL~NEP~ 217 (570)
+.| ..++.++|++|..+ |... --||...+=||=.
T Consensus 138 epf-k~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 138 EPF-KAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 111 34556667777764 3322 3377789999863
No 56
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.01 E-value=0.62 Score=54.05 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.++.|+++|+|+|=| |+....... ++ |.. ..+.+..+|.+.. .+.|+++|++|.++||.
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~-~w------------GY~--~~~~~a~~~~~G~---~~dfk~lV~~~H~~Gi~ 334 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGG-SW------------GYQ--PLGLYAPTARHGS---PDGFAQFVDACHRAGIG 334 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCC-CC------------CCC--CCcCCccCcccCC---HHHHHHHHHHHHHCCCE
Confidence 45678999999999998 664321111 00 000 0133555666543 47799999999999999
Q ss_pred EEEec
Q 008330 158 VILDN 162 (570)
Q Consensus 158 VILD~ 162 (570)
||||+
T Consensus 335 VIlD~ 339 (730)
T PRK12568 335 VILDW 339 (730)
T ss_pred EEEEe
Confidence 99994
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=94.34 E-value=1.2 Score=51.38 Aligned_cols=66 Identities=24% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+.+++.|++||+|+|-| |+....... ++ |.. ..+.+..+|.+.. .+.|+++|++|-++||.
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~-~w------------GY~--~~~~~~~~~~~g~---~~~~~~lv~~~H~~gi~ 232 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDG-SW------------GYQ--VTGYYAPTSRLGT---PEDFKYLVNHLHGLGIG 232 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCC-CC------------CcC--cccccccccccCC---HHHHHHHHHHHHHCCCE
Confidence 34567899999999998 554321111 01 000 0122444555532 57799999999999999
Q ss_pred EEEec
Q 008330 158 VILDN 162 (570)
Q Consensus 158 VILD~ 162 (570)
||||+
T Consensus 233 VilD~ 237 (639)
T PRK14706 233 VILDW 237 (639)
T ss_pred EEEEe
Confidence 99994
No 58
>PRK14705 glycogen branching enzyme; Provisional
Probab=94.24 E-value=0.84 Score=55.82 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.++.|++||||+|=| |+..+.... ++ |.. ..+.+..+|.+-. .+-|+++|++|.++||.
T Consensus 769 ~~lldYlk~LGvt~IeLmPv~e~p~~~-sw------------GY~--~~~y~ap~~ryGt---~~dfk~lVd~~H~~GI~ 830 (1224)
T PRK14705 769 KELVDYVKWLGFTHVEFMPVAEHPFGG-SW------------GYQ--VTSYFAPTSRFGH---PDEFRFLVDSLHQAGIG 830 (1224)
T ss_pred HHHHHHHHHhCCCEEEECccccCCCCC-CC------------CCC--ccccCCcCcccCC---HHHHHHHHHHHHHCCCE
Confidence 45679999999999988 764332211 01 000 1123455666543 56799999999999999
Q ss_pred EEEec---CCCC
Q 008330 158 VILDN---HISK 166 (570)
Q Consensus 158 VILD~---H~~~ 166 (570)
||||+ |...
T Consensus 831 VILD~V~nH~~~ 842 (1224)
T PRK14705 831 VLLDWVPAHFPK 842 (1224)
T ss_pred EEEEeccccCCc
Confidence 99994 6543
No 59
>smart00642 Aamy Alpha-amylase domain.
Probab=94.20 E-value=0.15 Score=48.39 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCcEEEe-ccccccc---ccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHh
Q 008330 77 PMDMLSKRVVDMGFNCVRL-TWPLYLA---TNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLG 152 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRl-Pi~~~~~---~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~ 152 (570)
.+.+-++.|+++|||+|-| |+..... ....|.. ...+..+|.+- -.+.++++|++|.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~----------------~d~~~i~~~~G---t~~d~~~lv~~~h 80 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDI----------------SDYKQIDPRFG---TMEDFKELVDAAH 80 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCc----------------cccCCCCcccC---CHHHHHHHHHHHH
Confidence 4556677899999999999 4322111 0001110 01123455543 2578999999999
Q ss_pred cCCCEEEEec
Q 008330 153 NNNVMVILDN 162 (570)
Q Consensus 153 ~~Gl~VILD~ 162 (570)
++||+||+|+
T Consensus 81 ~~Gi~vilD~ 90 (166)
T smart00642 81 ARGIKVILDV 90 (166)
T ss_pred HCCCEEEEEE
Confidence 9999999995
No 60
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.06 E-value=1.5 Score=51.16 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.++.|+++|+|+|=| |+....... ++ |.. ....+..+|.+.. .+.|+++|++|.++||.
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~-~w------------GY~--~~~~fa~~~~~Gt---p~dlk~LVd~aH~~GI~ 315 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYG-SF------------GYH--VTNFFAVSSRSGT---PEDLKYLIDKAHSLGLR 315 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCC-CC------------CcC--cccCcccccccCC---HHHHHHHHHHHHHCCCE
Confidence 56789999999999998 553221100 00 000 0112333444432 46799999999999999
Q ss_pred EEEec
Q 008330 158 VILDN 162 (570)
Q Consensus 158 VILD~ 162 (570)
||||+
T Consensus 316 VilDv 320 (758)
T PLN02447 316 VLMDV 320 (758)
T ss_pred EEEEe
Confidence 99994
No 61
>PRK10785 maltodextrin glucosidase; Provisional
Probab=93.82 E-value=1.4 Score=50.36 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+.+-++.|+++|+|+|=| |+... -.+..|. + .-.+..+|.+.+ .+.|+++|++|.++||
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s-~s~hgYd---~-------------~Dy~~iDp~~Gt---~~df~~Lv~~aH~rGi 240 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTA-PSVHKYD---T-------------EDYRHVDPQLGG---DAALLRLRHATQQRGM 240 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccC-CCCCCcC---c-------------ccccccCcccCC---HHHHHHHHHHHHHCCC
Confidence 456678899999999999 55321 0111111 0 012345777653 4679999999999999
Q ss_pred EEEEec---CCC
Q 008330 157 MVILDN---HIS 165 (570)
Q Consensus 157 ~VILD~---H~~ 165 (570)
+||||+ |..
T Consensus 241 kVilD~V~NH~~ 252 (598)
T PRK10785 241 RLVLDGVFNHTG 252 (598)
T ss_pred EEEEEECCCcCC
Confidence 999994 654
No 62
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=93.78 E-value=3.6 Score=45.89 Aligned_cols=195 Identities=15% Similarity=0.194 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCccccCCC--CCCCCCCCCCC--HHHHHHHHHHHHHHhCCC-CcEEEEeccCCC
Q 008330 142 KAFQAVVASLGNNNVMVILDNHISKPGWCCSNSD--GNGFFGDQYFN--PDLWIKGLTKMATIFNGV-RNVVGMSLRNEL 216 (570)
Q Consensus 142 ~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~d--gng~~~d~~~~--~~~~~~~w~~iA~ryk~~-p~Vig~dL~NEP 216 (570)
..++++++.- .+|+++..-... |.|-..+.+ +.+.......+ .+.|.+++.+..+.|+.+ =.|.++-+-|||
T Consensus 157 p~ik~a~~~~--~~lki~aSpWSp-P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP 233 (496)
T PF02055_consen 157 PLIKEALAIN--PNLKIFASPWSP-PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEP 233 (496)
T ss_dssp HHHHHHHHHH--TT-EEEEEES----GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSC
T ss_pred HHHHHHHHhC--CCcEEEEecCCC-CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 3444444332 348888887765 567543222 22322211011 367888888888999865 358899999999
Q ss_pred CCC------CC----ChhHHHHHHHH-HHHHHHhcCC--CcEEEEeCCCCCCcchh---hhhcccCcCCCCCEEEEEeec
Q 008330 217 RGP------KQ----NVKDWYRYMQL-GAEAVHAANP--EVLVILSGLNFDKDLSF---VRNQAVNLTFTGKLVFEAHWY 280 (570)
Q Consensus 217 ~~~------~~----~~~~W~~~~~~-~~~aIr~~dp--~~lIiVeG~~w~~dl~~---~~~~p~~l~~~~nlVys~H~Y 280 (570)
... .+ +.++-..++.. +.-++++.++ +.-|++-..++...-.. +-..|-. ..---...+|+|
T Consensus 234 ~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A--~~yv~GiA~HwY 311 (496)
T PF02055_consen 234 DNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEA--AKYVDGIAFHWY 311 (496)
T ss_dssp CGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHH--HTTEEEEEEEET
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhh--HhheeEEEEECC
Confidence 742 11 22333344433 6778888877 65554422222211111 1111100 001246799999
Q ss_pred CCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCC-------cc-hHHHHHHHHHHHHHCCCce
Q 008330 281 GFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNN-------VN-DNRYLNCFFGVAAELDWDW 352 (570)
Q Consensus 281 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~-------~~-~~~~~~~~~~~~~~~gigw 352 (570)
..... ...+. ...+ .| -+..++.+|-.......+ .. ..+|...++..+..---+|
T Consensus 312 ~g~~~-----------~~~l~-~~h~--~~---P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw 374 (496)
T PF02055_consen 312 GGDPS-----------PQALD-QVHN--KF---PDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGW 374 (496)
T ss_dssp TCS-H-----------CHHHH-HHHH--HS---TTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCCch-----------hhHHH-HHHH--HC---CCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhceee
Confidence 85321 01111 1111 10 235599999765432211 11 1356677777776544589
Q ss_pred EEeccC
Q 008330 353 ALWTLV 358 (570)
Q Consensus 353 ~~W~~~ 358 (570)
+.|.+-
T Consensus 375 ~~WNl~ 380 (496)
T PF02055_consen 375 IDWNLA 380 (496)
T ss_dssp EEEESE
T ss_pred eeeeee
Confidence 999863
No 63
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.1 Score=58.48 Aligned_cols=102 Identities=23% Similarity=0.510 Sum_probs=72.8
Q ss_pred CCCceeeeecCC----CCceecCCCCCC---CCccccCCcceeecccceEEeeccCCccceeccccC-CCCCceeEeecc
Q 008330 417 PATGLCVQRKSF----LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT-DCGSTWEIISDS 488 (570)
Q Consensus 417 ~~tg~c~~~~~~----~~~~~~~~c~~~---~~W~~~~~~~~~~~~~~~cl~a~~~g~~~~~~~~c~-~~~~~W~~~s~~ 488 (570)
..++.|.+.... +.++.+.+|.+. |-|.||.+++|.. +.+|++.-..|. +.+ .+|. ..+|.|..-.++
T Consensus 461 ~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~--~~~cl~~~~~~~-v~l-~~C~~~~~q~w~~~~~~ 536 (578)
T KOG3736|consen 461 GNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRI--GDLCLDVDDAGK-VTL-YDCHKMGNQLWHYDKDG 536 (578)
T ss_pred CCcchhhhhhchhccCCCcceEecCCCccccccccccCCcceEE--CCEEeccccCCc-eEE-EecccccccceEEcCCC
Confidence 778999998441 245889999883 7999999999886 349998765555 666 8996 338999997774
Q ss_pred ccEEEEecCCCceEEEeecCCCc-eeecceeeeCCCCCCCccCceE
Q 008330 489 KMHLSSKADNGTTVCLDVDSSNT-IVTNTCKCLSRDKTCDPASQWF 533 (570)
Q Consensus 489 ~~~~~~~~~~~~~~cld~~~~~~-~~~~~c~c~~~~~~~~~~~~~~ 533 (570)
.+ -..+++.||+...... ++-..|.|- +|..||.
T Consensus 537 ~i-----~~~~sg~CL~~~~~~~~~~l~~c~~~------~~~Q~W~ 571 (578)
T KOG3736|consen 537 TL-----YHRNSGKCLEAAVDKNGLILVACDPS------DPTQQWL 571 (578)
T ss_pred ce-----EcCCCCccccccCCCCCceEeecCCC------CCcceEE
Confidence 32 2346789999985332 444666653 4567884
No 64
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.54 E-value=1.4 Score=50.51 Aligned_cols=154 Identities=19% Similarity=0.289 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchh----hccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 80 MLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLE----AIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 80 ~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~----~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
+.++.|+++|+|+|=| |+....-.++ ..+ ..+. ..|... .+.+-+..+|... ....+.|+++|++|.++
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~---~~~-~~~~-~wGY~~~~y~~~~~~y~~~p~~~-~~~~~efk~lV~~~H~~ 241 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDE---EDP-NNAY-NWGYDPLNYNVPEGSYSTNPYDP-ATRIRELKQMIQALHEN 241 (605)
T ss_pred hHHHHHHHcCCCEEEeCCccccccccc---ccC-CCCC-CCCCCCccCCCcChhhhcCCCcc-chHHHHHHHHHHHHHHC
Confidence 4589999999999999 6642110000 000 0000 000000 0001122334321 22357899999999999
Q ss_pred CCEEEEe---cCCCC----------CCcccc-CCCC-----CCCCCCCCCCHHHHHHHH----HHHHHHhCCCCcEEEEe
Q 008330 155 NVMVILD---NHISK----------PGWCCS-NSDG-----NGFFGDQYFNPDLWIKGL----TKMATIFNGVRNVVGMS 211 (570)
Q Consensus 155 Gl~VILD---~H~~~----------~~w~~~-~~dg-----ng~~~d~~~~~~~~~~~w----~~iA~ryk~~p~Vig~d 211 (570)
||.|||| +|... |.|... ..++ .++.++-........++. +.-+++| +-...- +|
T Consensus 242 Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~-~iDGfR-~D 319 (605)
T TIGR02104 242 GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEY-NIDGFR-FD 319 (605)
T ss_pred CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHc-CCCEEE-Ee
Confidence 9999999 47642 111100 0000 011111111112222333 3333334 233443 67
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 212 LRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 212 L~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
++... +.. .++++.++|++++|+..++-|+
T Consensus 320 ~~~~~-----~~~----~~~~~~~~~~~~~p~~~ligE~ 349 (605)
T TIGR02104 320 LMGIH-----DIE----TMNEIRKALNKIDPNILLYGEG 349 (605)
T ss_pred chhcC-----CHH----HHHHHHHHHHhhCCCeEEEEcc
Confidence 77443 122 2356677888999999888886
No 65
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.40 E-value=1.2 Score=40.65 Aligned_cols=107 Identities=11% Similarity=0.275 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCcEEEecccc-cccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPL-YLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~-~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
.++.++.+++.|.|+|-+.-.- ..+. -|+. .+...+|.+. .+.|.++|++|.++||
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~a--yYPt-----------------~~~~~hp~L~----~Dllge~v~a~h~~Gi 58 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYA--YYPT-----------------KVGPRHPGLK----RDLLGEQVEACHERGI 58 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEE--EccC-----------------CCCcCCCCCC----cCHHHHHHHHHHHCCC
Confidence 4678999999999999994431 1110 0211 1123466653 3679999999999999
Q ss_pred EEEE--ecCCC------CCCccccCCCCC----------CCC----CCCCCCHHHHHHHHHHHHHHhCCCCcEEEEe
Q 008330 157 MVIL--DNHIS------KPGWCCSNSDGN----------GFF----GDQYFNPDLWIKGLTKMATIFNGVRNVVGMS 211 (570)
Q Consensus 157 ~VIL--D~H~~------~~~w~~~~~dgn----------g~~----~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~d 211 (570)
.|++ |.+.. .|.|++-..+|. +|+ ++.| .+..++..+.|.++| +-..|. +|
T Consensus 59 rv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y--~e~~~~~i~Ei~~~y-~~DGiF-~D 131 (132)
T PF14871_consen 59 RVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPY--REFLLEQIREILDRY-DVDGIF-FD 131 (132)
T ss_pred EEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccH--HHHHHHHHHHHHHcC-CCCEEE-ec
Confidence 9984 55533 278876444443 111 1111 355667778888888 444554 44
No 66
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=93.18 E-value=0.34 Score=53.84 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEeccccccccc---CccccchhhhhhhhccchhhccC
Q 008330 51 GHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATN---DSLASLTVRQSFQKLGLLEAIGG 127 (570)
Q Consensus 51 G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~---~~~~n~tv~~s~~~lg~~~~~~g 127 (570)
+..|.|+|.+|... ..|-+-+.+.+-++.|+++|||+|=|+=....... ..|.. . .+-.++ + +..
T Consensus 2 ~~~~~~q~f~w~~~-----~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~---~-D~~~~~--~-~~~ 69 (479)
T PRK09441 2 RNGTMMQYFEWYLP-----NDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGV---Y-DLFDLG--E-FDQ 69 (479)
T ss_pred CCceEEEEEEeccC-----CCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCe---e-cccccc--c-ccc
Confidence 34588999999632 33444455677789999999999999322221110 01110 0 000000 0 000
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEe---cCCC
Q 008330 128 IQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILD---NHIS 165 (570)
Q Consensus 128 ~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD---~H~~ 165 (570)
....+|.+-. .+.|+++|++|.++||+||+| +|..
T Consensus 70 ~~~id~~fGt---~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 70 KGTVRTKYGT---KEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred cCCcCcCcCC---HHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 0023555543 456999999999999999999 5765
No 67
>PLN02960 alpha-amylase
Probab=93.16 E-value=3.5 Score=48.64 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.++.|+++|+|+|=| |+..... . .+ .|.. ....+..+|.+.. .+.|+++|++|-++||.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~-~---~s---------wGY~--~~~yfa~~~~yGt---p~dfk~LVd~aH~~GI~ 481 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKD-Y---SS---------VGYK--VTNFFAVSSRFGT---PDDFKRLVDEAHGLGLL 481 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCC-C---CC---------CCCC--cccCCCcccccCC---HHHHHHHHHHHHHCCCE
Confidence 45689999999999999 5532110 0 00 0100 0122344555433 47799999999999999
Q ss_pred EEEec---CCCC
Q 008330 158 VILDN---HISK 166 (570)
Q Consensus 158 VILD~---H~~~ 166 (570)
||||+ |...
T Consensus 482 VILDvV~NH~~~ 493 (897)
T PLN02960 482 VFLDIVHSYAAA 493 (897)
T ss_pred EEEEecccccCC
Confidence 99994 6543
No 68
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=93.09 E-value=1.8 Score=48.82 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=75.6
Q ss_pred HHHHHHHHHHcCCcEEEe-ccccccc-ccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLA-TNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~-~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
+.+-++.|+++|+|+|-| |+....- .+-.|.. ...+..+|.+.. .+.|+++|++|.++|
T Consensus 113 i~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~----------------~~~~~~~~~~G~---~~e~k~lV~~aH~~G 173 (542)
T TIGR02402 113 AIEKLPYLADLGITAIELMPVAQFPGTRGWGYDG----------------VLPYAPHNAYGG---PDDLKALVDAAHGLG 173 (542)
T ss_pred HHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCc----------------cCccccccccCC---HHHHHHHHHHHHHCC
Confidence 345578999999999999 5532110 0001110 011334555433 567999999999999
Q ss_pred CEEEEe---cCCCCCC--------ccccCCCCCCCCCCC-CCC-H--HHHHHHHHHHHHHhCC---CCcEEEEeccCCCC
Q 008330 156 VMVILD---NHISKPG--------WCCSNSDGNGFFGDQ-YFN-P--DLWIKGLTKMATIFNG---VRNVVGMSLRNELR 217 (570)
Q Consensus 156 l~VILD---~H~~~~~--------w~~~~~dgng~~~d~-~~~-~--~~~~~~w~~iA~ryk~---~p~Vig~dL~NEP~ 217 (570)
|.|||| +|....+ |... +...+|++. .++ + +...++....+...-. -...- +|+...-.
T Consensus 174 i~VilD~V~NH~~~~~~~~~~~~~y~~~--~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR-~D~~~~~~ 250 (542)
T TIGR02402 174 LGVILDVVYNHFGPEGNYLPRYAPYFTD--RYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLR-LDAVHAIA 250 (542)
T ss_pred CEEEEEEccCCCCCccccccccCccccC--CCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEE-EeCHHHhc
Confidence 999999 4653211 1100 111233322 111 1 1222333333333321 22332 56554432
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCC---cEEEEeC
Q 008330 218 GPKQNVKDWYRYMQLGAEAVHAANPE---VLVILSG 250 (570)
Q Consensus 218 ~~~~~~~~W~~~~~~~~~aIr~~dp~---~lIiVeG 250 (570)
.. . -..+++++.+++++++|+ .++|-|.
T Consensus 251 ~~--~---~~~~l~~~~~~~~~~~p~~~~~~li~E~ 281 (542)
T TIGR02402 251 DT--S---AKHILEELAREVHELAAELRPVHLIAES 281 (542)
T ss_pred cc--c---HHHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 11 1 123456677888999888 6666675
No 69
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=93.07 E-value=0.16 Score=51.71 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+.+-++.|+++|||+|-| |+...--....|. + ...+..+|.+- -.+.|+++|++|.++||
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~---~-------------~d~~~vd~~~G---t~~d~~~Lv~~~h~~gi 66 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYD---P-------------SDYYAVDPRFG---TMEDFKELVDAAHKRGI 66 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTS---E-------------SEEEEESTTTB---HHHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHcCCCceeccccccccccccccc---c-------------eeeeccccccc---hhhhhhhhhhccccccc
Confidence 445578999999999999 3422100000111 0 01134567664 35789999999999999
Q ss_pred EEEEec
Q 008330 157 MVILDN 162 (570)
Q Consensus 157 ~VILD~ 162 (570)
+||||+
T Consensus 67 ~VilD~ 72 (316)
T PF00128_consen 67 KVILDV 72 (316)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 999995
No 70
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=92.95 E-value=14 Score=38.87 Aligned_cols=254 Identities=16% Similarity=0.219 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
.++++++.|++.|+|+|=|.+-.+ ++..+-+... +.. ..+....+ ...-++++|+.+.++||
T Consensus 14 ~~~~~~~~i~~t~lNavVIDvKdd------~G~i~y~s~~-----~~~-~~~ga~~~------~i~D~~~l~~~l~e~gI 75 (316)
T PF13200_consen 14 RLDKLLDLIKRTELNAVVIDVKDD------DGNITYDSQV-----PLA-REIGAVKP------YIKDLKALVKKLKEHGI 75 (316)
T ss_pred HHHHHHHHHHhcCCceEEEEEecC------CceEEecCCC-----chh-hhcccccc------cccCHHHHHHHHHHCCC
Confidence 478999999999999999977432 1111110000 000 00001111 12338899999999999
Q ss_pred EEEEecCCC--------CCCccccCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhC--CCCcEEEEeccCCCCCC
Q 008330 157 MVILDNHIS--------KPGWCCSNSDGNGF-------FGDQYFNPDLWIKGLTKMATIFN--GVRNVVGMSLRNELRGP 219 (570)
Q Consensus 157 ~VILD~H~~--------~~~w~~~~~dgng~-------~~d~~~~~~~~~~~w~~iA~ryk--~~p~Vig~dL~NEP~~~ 219 (570)
|+|-=+... .|.|.-...+|..| |-|+ ++++.|. +.-.||++-. +...|- ||=+==|.+.
T Consensus 76 Y~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP-~~~evw~-Y~i~IA~Eaa~~GFdEIq-fDYIRFP~~~ 152 (316)
T PF13200_consen 76 YPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNP-YSKEVWD-YNIDIAKEAAKLGFDEIQ-FDYIRFPDEG 152 (316)
T ss_pred EEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCC-CCHHHHH-HHHHHHHHHHHcCCCEEE-eeeeecCCCC
Confidence 998654433 25565433333222 3333 4556552 2233444432 555655 6655555421
Q ss_pred C---------C----ChhHHHHHHHHHHHHHHhcCCCcEEEEeCC-CC-------CCcchhhhhcccCcCCCCCEEEEEe
Q 008330 220 K---------Q----NVKDWYRYMQLGAEAVHAANPEVLVILSGL-NF-------DKDLSFVRNQAVNLTFTGKLVFEAH 278 (570)
Q Consensus 220 ~---------~----~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~-~w-------~~dl~~~~~~p~~l~~~~nlVys~H 278 (570)
. . -.+....+++.+.+++++.+-..=+=|=|. .| |+++..+.. .--+.++=
T Consensus 153 ~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~--------~vD~IsPM 224 (316)
T PF13200_consen 153 RLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAE--------YVDYISPM 224 (316)
T ss_pred cccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhh--------hCCEEEec
Confidence 0 0 124456677777888888765443333232 23 233332221 11244555
Q ss_pred ecCCCCCCCC--CCCCCcchhhHHHHHHHHHHHHHHhc-CCC---eEEeccccCCCCCC--cchHHHHHHHHHHHHHCCC
Q 008330 279 WYGFTDGQAW--VDGNPNQVCGRVVDNVMRLSGFLLEQ-GWP---LFVSEFGADLRGNN--VNDNRYLNCFFGVAAELDW 350 (570)
Q Consensus 279 ~Y~~~~~~~w--~~~~~~~~~~~~~~~~~~~~g~l~~~-g~P---v~iGEFG~~~~~~~--~~~~~~~~~~~~~~~~~gi 350 (570)
.|+-...... ...+....++-+...+.+....+... +.+ =++=-|.......+ .-....++..+..+++.|+
T Consensus 225 iYPSh~~~g~~g~~~P~~~PY~~v~~~~~~~~~~~~~~~~~~~~RPWlQ~Ft~~~~~~~~~~Yg~~ev~aQI~A~~d~g~ 304 (316)
T PF13200_consen 225 IYPSHYGPGFFGIDKPDLEPYEIVYRSLKRAKERLRGLEGPAIIRPWLQDFTASWLGKNYKEYGPEEVRAQIQALKDAGI 304 (316)
T ss_pred ccccccCcccCCCCCcccChHHHHHHHHHHHHHHhhcCCCCCeEecccccccccccccCccccCHHHHHHHHHHHHHcCC
Confidence 5542111111 11121222233333443322222211 111 24555665543321 1135778888999999998
Q ss_pred -ceEEeccCc
Q 008330 351 -DWALWTLVG 359 (570)
Q Consensus 351 -gw~~W~~~G 359 (570)
+|++|.-.+
T Consensus 305 ~~~llWna~n 314 (316)
T PF13200_consen 305 EGWLLWNASN 314 (316)
T ss_pred CeEEEECCCC
Confidence 599998653
No 71
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.50 E-value=0.68 Score=50.26 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchh-hhhhhhc-cchh----hccCcc-----cCCCCCCCchHHHHHHH
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTV-RQSFQKL-GLLE----AIGGIQ-----SNNPSIVDLPLIKAFQA 146 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv-~~s~~~l-g~~~----~~~g~~-----~~nP~~~~~t~l~~ld~ 146 (570)
.+..+|.|+-+|||.+=.|..-+.+=.+.|....+ ++.++.. +-+. ...|+. ...|.+.. .-+-.=++
T Consensus 80 WeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~-~ql~Lqkr 158 (666)
T KOG2233|consen 80 WEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWML-NQLLLQKR 158 (666)
T ss_pred HHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHH-HHHHHHHH
Confidence 68889999999999998886543221111111001 0111110 0000 001111 11222211 11222358
Q ss_pred HHHHHhcCCCEEEEec---CCCC--------------CCc-------cccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC
Q 008330 147 VVASLGNNNVMVILDN---HISK--------------PGW-------CCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFN 202 (570)
Q Consensus 147 vV~~a~~~Gl~VILD~---H~~~--------------~~w-------~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk 202 (570)
+|+...+.||-++|-- |... +.| ||...-. + .|..| ++---.+++.+.++|.
T Consensus 159 Iidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~-P--~dplF-~eIgs~Flr~~~kefG 234 (666)
T KOG2233|consen 159 IIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVS-P--FDPLF-QEIGSTFLRHQIKEFG 234 (666)
T ss_pred HHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEcc-C--CcchH-HHHHHHHHHHHHHHhC
Confidence 9999999999999853 2221 122 2321000 0 01111 2333468899999999
Q ss_pred CCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 203 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 203 ~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
+..|+.+.|.+||-..+....+-......+++++.+++|++.+=.+.|-
T Consensus 235 ~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgW 283 (666)
T KOG2233|consen 235 GVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGW 283 (666)
T ss_pred CcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecc
Confidence 9999999999999877754444445566778889999999988777763
No 72
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.28 E-value=5.5 Score=41.74 Aligned_cols=159 Identities=15% Similarity=0.198 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
+.++++++.++++|||+|=+-+-.. ...-|++... ... ....|....+| .++-|+.+|++|.++|
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~--gda~Y~S~~~-p~s------~~~~g~~~~~p------g~DpL~~~I~eaHkrG 83 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPR--GDALYPSDIE-PWS------GYLTGKQGKDP------GFDPLEFMIEEAHKRG 83 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeC--cEEEeccccc-ccc------cccCCCCCCCC------CccHHHHHHHHHHHcC
Confidence 3478999999999999987755432 1111222111 000 00111112223 4678999999999999
Q ss_pred CEEEEec--CCC----------CCCccc--------cCCC--CCCCCCCCCC--CHHHHHHHHHHHHHHhCCCCcEEEEe
Q 008330 156 VMVILDN--HIS----------KPGWCC--------SNSD--GNGFFGDQYF--NPDLWIKGLTKMATIFNGVRNVVGMS 211 (570)
Q Consensus 156 l~VILD~--H~~----------~~~w~~--------~~~d--gng~~~d~~~--~~~~~~~~w~~iA~ryk~~p~Vig~d 211 (570)
|.|.-=+ ... .|.|.. ...+ +...|-|... .++..+++.+.|+++|. -..|- ||
T Consensus 84 levHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIh-lD 161 (311)
T PF02638_consen 84 LEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIH-LD 161 (311)
T ss_pred CEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEE-ec
Confidence 9986221 110 122311 1100 1112222211 13455788899999995 55554 55
Q ss_pred -cc--------CCCCC----------CCCC-----hhHHH-----HHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 212 -LR--------NELRG----------PKQN-----VKDWY-----RYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 212 -L~--------NEP~~----------~~~~-----~~~W~-----~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
.+ +++.. +..+ +.+|+ .+++++.++|++++|+..+-++..
T Consensus 162 dy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~ 230 (311)
T PF02638_consen 162 DYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPF 230 (311)
T ss_pred ccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 11 00000 0001 23464 578899999999999999998765
No 73
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=11 Score=40.91 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
..+.++++.++++|||+|=.-+....-. -|.+-..+.+ ...+|... ....++-|..+|+.|.++|
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~--lypS~~~p~s-------~~~~~~~~------~~~g~DpLa~~I~~AHkr~ 128 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDA--LYPSAVLPWS-------DGLPGVLG------VDPGYDPLAFVIAEAHKRG 128 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccc--cccccccccc-------cCcCcccC------CCCCCChHHHHHHHHHhcC
Confidence 4478899999999999997755321100 0211110000 00112111 2234577999999999999
Q ss_pred CEEEE--e----------cCCCCCCccccCCC------CCC----CCCCCCCCH--HHH-HHHHHHHHHHhCCCC----c
Q 008330 156 VMVIL--D----------NHISKPGWCCSNSD------GNG----FFGDQYFNP--DLW-IKGLTKMATIFNGVR----N 206 (570)
Q Consensus 156 l~VIL--D----------~H~~~~~w~~~~~d------gng----~~~d~~~~~--~~~-~~~w~~iA~ryk~~p----~ 206 (570)
|.|+- . .|...+.|-....+ +++ +|=|. ..+ .+| .++...|+++|.=.. .
T Consensus 129 l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldP-g~Pevq~~i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 129 LEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDP-GIPEVQDFITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred CeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCC-CChHHHHHHHHHHHHHHhCCCCCceecce
Confidence 99974 1 22222333222111 122 22222 222 334 467778888886432 2
Q ss_pred EEEEe----------------ccCCCCCCCCChhHHH-----HHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 207 VVGMS----------------LRNELRGPKQNVKDWY-----RYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 207 Vig~d----------------L~NEP~~~~~~~~~W~-----~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
+..+. -.+.|-.....+.+|+ ++|+++..+|+++.|+..+-|...
T Consensus 208 ~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp~ 273 (418)
T COG1649 208 YFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSPF 273 (418)
T ss_pred eecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEccC
Confidence 22111 1111111000123664 578999999999999999999873
No 74
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=90.33 E-value=0.35 Score=50.59 Aligned_cols=188 Identities=15% Similarity=0.215 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHH-HHH---h--CCCCcEEEEeccC
Q 008330 141 IKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKM-ATI---F--NGVRNVVGMSLRN 214 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~i-A~r---y--k~~p~Vig~dL~N 214 (570)
+++.|++.+-+.+-|+.||..+-...+.- ......+.--|..- |+. | ...-+|-++||.|
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLNAL~g~~--------------~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGN 173 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLNALLGRR--------------QLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGN 173 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-TTTS-H--------------HHHHHHHHHHHHHH-TTTEEEEEESS-GGG-------
T ss_pred hhHHHHHHHHHHHhCCEEEEEecccCCCC--------------CCCCCCcCCCCChHHHHHHHHHHHHcCCCcccccccc
Confidence 46789999999999999999876543210 00001222333221 111 2 1122466899999
Q ss_pred CCCCCC----CChhHHHHHH---HHHHHHHHhc-CCCcEEEEeCCCCCCcc--hhhhhcccCcCCCCCEEEEEeecCCCC
Q 008330 215 ELRGPK----QNVKDWYRYM---QLGAEAVHAA-NPEVLVILSGLNFDKDL--SFVRNQAVNLTFTGKLVFEAHWYGFTD 284 (570)
Q Consensus 215 EP~~~~----~~~~~W~~~~---~~~~~aIr~~-dp~~lIiVeG~~w~~dl--~~~~~~p~~l~~~~nlVys~H~Y~~~~ 284 (570)
||.+.+ -+..++-+-+ +++++.|... .+.-+|+-.+..++.+. .++....-. -=-+++.|+|....
T Consensus 174 El~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~----~vD~vT~H~Y~lg~ 249 (319)
T PF03662_consen 174 ELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPG----VVDAVTWHHYNLGS 249 (319)
T ss_dssp -HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT------SEEEEEEEEE--
T ss_pred ccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCC----ccCEEEEEecCCCC
Confidence 997643 1333343222 3344444332 34444555544444332 123221110 12367999995321
Q ss_pred CCCCC--CCCCc-chhhHHHHHHHHHHHHHH--hcCCCeEEeccccCCCCCC-cchHHHHHHHHHHHHH
Q 008330 285 GQAWV--DGNPN-QVCGRVVDNVMRLSGFLL--EQGWPLFVSEFGADLRGNN-VNDNRYLNCFFGVAAE 347 (570)
Q Consensus 285 ~~~w~--~~~~~-~~~~~~~~~~~~~~g~l~--~~g~Pv~iGEFG~~~~~~~-~~~~~~~~~~~~~~~~ 347 (570)
...-. .+..+ ..-..+...+......+. ..+.|+++||-|....++. ...++|...|. |+++
T Consensus 250 g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~Fw-wLDq 317 (319)
T PF03662_consen 250 GRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFW-WLDQ 317 (319)
T ss_dssp TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHH-HHHH
T ss_pred CchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHH-HHHh
Confidence 10000 00000 011122222222222221 1668999999999876543 23456666664 3444
No 75
>PLN02877 alpha-amylase/limit dextrinase
Probab=90.14 E-value=6.8 Score=46.97 Aligned_cols=37 Identities=32% Similarity=0.500 Sum_probs=27.6
Q ss_pred CcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEe---cCCC
Q 008330 127 GIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILD---NHIS 165 (570)
Q Consensus 127 g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD---~H~~ 165 (570)
|-|..+|. +..-+..|+++|+.|.++||.||+| +|..
T Consensus 453 gSYatdP~--g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~ 492 (970)
T PLN02877 453 GSYASNPD--GPCRIIEFRKMVQALNRIGLRVVLDVVYNHLH 492 (970)
T ss_pred cccccCCC--CcchHHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence 33444552 2344677999999999999999999 5774
No 76
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=90.09 E-value=7.3 Score=47.57 Aligned_cols=99 Identities=21% Similarity=0.457 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEe---cCCCC--------CCccc-cCCCCC---CCCCCCC-C-C---HHHHHHHHHHHHHH
Q 008330 141 IKAFQAVVASLGNNNVMVILD---NHISK--------PGWCC-SNSDGN---GFFGDQY-F-N---PDLWIKGLTKMATI 200 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VILD---~H~~~--------~~w~~-~~~dgn---g~~~d~~-~-~---~~~~~~~w~~iA~r 200 (570)
++.|+++|++|.++||.|||| +|... |+|.. ...++. .|-++.. . . .+.+++..+..++.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 577999999999999999999 46542 22210 000111 1111110 0 1 12233444444555
Q ss_pred hCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 201 FNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 201 yk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
|+ ....- ||++..- ... .++++..++++++|+.+++-|+
T Consensus 634 y~-VDGFR-fDl~g~~-----d~~----~~~~~~~~l~~~dP~~~liGE~ 672 (1111)
T TIGR02102 634 FK-VDGFR-FDMMGDH-----DAA----SIEIAYKEAKAINPNIIMIGEG 672 (1111)
T ss_pred cC-CcEEE-EeccccC-----CHH----HHHHHHHHHHHhCcCEEEEEec
Confidence 54 23433 7888531 122 2345567788899998888886
No 77
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=89.63 E-value=1.1 Score=50.98 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+++.+..+++|||++|=| |+..+-... +|+ .|- .+.+.....+- --+-|+++||+|-++||
T Consensus 167 a~~llpYl~elG~T~IELMPv~e~p~~~-sWG-------Yq~-------~g~yAp~sryG---tPedfk~fVD~aH~~GI 228 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAEHPGDR-SWG-------YQG-------TGYYAPTSRYG---TPEDFKALVDAAHQAGI 228 (628)
T ss_pred HHHHhHHHHHhCCCEEEEcccccCCCCC-CCC-------CCc-------ceeccccccCC---CHHHHHHHHHHHHHcCC
Confidence 467788999999999998 776543322 111 000 01122211221 23568999999999999
Q ss_pred EEEEec---CCCC
Q 008330 157 MVILDN---HISK 166 (570)
Q Consensus 157 ~VILD~---H~~~ 166 (570)
.||||. |-.+
T Consensus 229 gViLD~V~~HF~~ 241 (628)
T COG0296 229 GVILDWVPNHFPP 241 (628)
T ss_pred EEEEEecCCcCCC
Confidence 999994 6544
No 78
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=0.27 Score=52.10 Aligned_cols=92 Identities=23% Similarity=0.497 Sum_probs=58.5
Q ss_pred eeeeecCC--CCceecCCCCCC---CCccccCCcceeecccceEEeecc--CCccceeccccCCCCCceeEeeccccEEE
Q 008330 421 LCVQRKSF--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKH--VGKPAKLGIICTDCGSTWEIISDSKMHLS 493 (570)
Q Consensus 421 ~c~~~~~~--~~~~~~~~c~~~---~~W~~~~~~~~~~~~~~~cl~a~~--~g~~~~~~~~c~~~~~~W~~~s~~~~~~~ 493 (570)
.|++..+. .+.+.++.|-++ ++|.+.-+..-.+....+||.+.. .|+++++ .-|.....+|+.+-.+. ||
T Consensus 442 ~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~~~~~~~~elCL~v~~~~pg~~v~l-~~C~~~e~~q~~v~~~~-~l- 518 (559)
T KOG3738|consen 442 NCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTSTQLITHRELCLAVGSNTPGSPVAL-VPCGNNETKQRWVELGG-HL- 518 (559)
T ss_pred hhhhhhhcccccCcceeecccCCCCcchhhhhhhhhHHHHHhhhheeecCCCCCeEEE-EecCCCCCceEEEecCC-ch-
Confidence 47776332 233778999875 799994333222246789999888 5999999 78984444554443332 32
Q ss_pred EecCCCceEEEeecCCCc--eeecce
Q 008330 494 SKADNGTTVCLDVDSSNT--IVTNTC 517 (570)
Q Consensus 494 ~~~~~~~~~cld~~~~~~--~~~~~c 517 (570)
...++.||||...-|. +.-+.|
T Consensus 519 --~h~~s~KOGd~~~~g~~~l~~~~C 542 (559)
T KOG3738|consen 519 --LHAGSHLCLDNPLKGRWLLEVSTC 542 (559)
T ss_pred --hcccccceeccccCCCcceeeccc
Confidence 3458999999985443 444544
No 79
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=87.88 E-value=1.3 Score=49.98 Aligned_cols=69 Identities=19% Similarity=0.297 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcCCcEEEe-cccccccccC-ccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 77 PMDMLSKRVVDMGFNCVRL-TWPLYLATND-SLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~-~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
.+.+-++.|+++|+|+|=| |+... -..+ .|. + ...+..+|.+.. .+.|+++|++|.++
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~-~~~~~gY~---~-------------~d~~~id~~~Gt---~~~~~~lv~~ah~~ 87 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVS-PQKDNGYD---V-------------SDYYAINPLFGT---MADFEELVSEAKKR 87 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccC-CCCCCCCC---c-------------cccCccCcccCC---HHHHHHHHHHHHHC
Confidence 3556678999999999998 44221 0100 111 0 112345666543 47899999999999
Q ss_pred CCEEEEec---CCC
Q 008330 155 NVMVILDN---HIS 165 (570)
Q Consensus 155 Gl~VILD~---H~~ 165 (570)
||+||||+ |..
T Consensus 88 gi~vilD~v~NH~~ 101 (543)
T TIGR02403 88 NIKIMLDMVFNHTS 101 (543)
T ss_pred CCEEEEEECccccc
Confidence 99999994 654
No 80
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=87.83 E-value=1.4 Score=49.84 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+.+-++.|+++|+++|=| |+...--....|. + ...+..+|.+.. .+.|+++|++|.++||
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~---~-------------~d~~~id~~~Gt---~~d~~~lv~~~h~~gi 95 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYD---V-------------ANYTAIDPTYGT---LDDFDELVAQAKSRGI 95 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCC---c-------------ccCCCcCcccCC---HHHHHHHHHHHHHCCC
Confidence 456678999999999988 5531100000111 0 112455777653 4679999999999999
Q ss_pred EEEEec---CCC
Q 008330 157 MVILDN---HIS 165 (570)
Q Consensus 157 ~VILD~---H~~ 165 (570)
+||||+ |..
T Consensus 96 ~vilD~V~NH~s 107 (551)
T PRK10933 96 RIILDMVFNHTS 107 (551)
T ss_pred EEEEEECCCCcc
Confidence 999994 654
No 81
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=87.77 E-value=1.1 Score=51.78 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCcEEEe-cccccccccCccccchhhhhh-hhccchh----hccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 80 MLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSF-QKLGLLE----AIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 80 ~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~-~~lg~~~----~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.+++.++++|+++|.| |+....-.+.. . ...+ ...|... +..+-|..+|. -.+.+..|+..|+++.+
T Consensus 204 ~~i~yLk~LGvtaVeLLPV~~~~~~~~l-~----~~gl~n~WGYdP~~fFAp~~~Yss~p~--p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 204 VIIDYLKDLGVTAVELLPVFDFYDEPHL-D----KSGLNNNWGYDPLNFFAPEGRYASNPE--PATRIKEFKDMVKALHK 276 (697)
T ss_pred cHHHHHHHhCCceEEEecceEEeccccc-c----ccccccccCCCcccccCCCccccCCCC--cchHHHHHHHHHHHHHH
Confidence 3599999999999998 77654332210 0 0000 0011111 12344555665 23467789999999999
Q ss_pred CCCEEEEe---cCCCC
Q 008330 154 NNVMVILD---NHISK 166 (570)
Q Consensus 154 ~Gl~VILD---~H~~~ 166 (570)
+||-|||| +|...
T Consensus 277 aGI~VILDVVfNHTae 292 (697)
T COG1523 277 AGIEVILDVVFNHTAE 292 (697)
T ss_pred cCCEEEEEEeccCccc
Confidence 99999999 58753
No 82
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=86.95 E-value=1.7 Score=49.14 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 77 PMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
.+.+-++.|+++|+|+|=| |+......+..|. + ...+..+|.+-+ .+.++++|++|.++|
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~---~-------------~dy~~vd~~~Gt---~~df~~Lv~~ah~~G 89 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYD---V-------------SDYRAILPEFGT---IDDFKDFVDEAHARG 89 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCC---c-------------ccccccChhhCC---HHHHHHHHHHHHHCC
Confidence 3556688999999999998 4422110011111 0 112345666543 477999999999999
Q ss_pred CEEEEe---cCCC
Q 008330 156 VMVILD---NHIS 165 (570)
Q Consensus 156 l~VILD---~H~~ 165 (570)
|+|||| +|..
T Consensus 90 i~vilD~V~NH~s 102 (539)
T TIGR02456 90 MRVIIDLVLNHTS 102 (539)
T ss_pred CEEEEEeccCcCC
Confidence 999999 4653
No 83
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=85.96 E-value=1.3 Score=51.41 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=43.6
Q ss_pred HHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEE
Q 008330 81 LSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVI 159 (570)
Q Consensus 81 ~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VI 159 (570)
.++.|+++|+|+|=| |+... .... ..+..+.-...|.. ....+..+|.+....-.+.|+++|++|.++||+||
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~-~~~~---~~~~~~~~~ywGYd--~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VI 262 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAF-IDDR---HLLEKGLRNYWGYN--TLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVI 262 (688)
T ss_pred hhHHHHHcCCCEEEECCcccC-Cccc---cccccCCCCccCcC--cccccccChhhcCCCCHHHHHHHHHHHHHCCCEEE
Confidence 478999999999999 55321 1110 00000000000000 00112334444211236789999999999999999
Q ss_pred Ee---cCCC
Q 008330 160 LD---NHIS 165 (570)
Q Consensus 160 LD---~H~~ 165 (570)
|| +|..
T Consensus 263 lDvV~NHt~ 271 (688)
T TIGR02100 263 LDVVYNHTA 271 (688)
T ss_pred EEECcCCcc
Confidence 99 4654
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=85.29 E-value=2.1 Score=49.61 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCc-----ccCCCCCCCchHHHHHHHHHHHH
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI-----QSNNPSIVDLPLIKAFQAVVASL 151 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~-----~~~nP~~~~~t~l~~ld~vV~~a 151 (570)
+.+-++.|++||||+|=| |+-.. +... .+..+ ..++.. ..+.|. +..+|.+. -.+.|+++|++|
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~-~~~~-~~~g~-~g~~~~----~~yhgY~~~D~~~id~~~G---t~~dfk~Lv~~a 301 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQ-IHGW-VGGGT-KGDFPH----YAYHGYYTLDWTKLDANMG---TEADLRTLVDEA 301 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccc-cccc-ccccc-ccCCCc----CCCCCCCccccccCCCCCC---CHHHHHHHHHHH
Confidence 456688999999999998 33211 1000 00000 000000 011121 23355553 357799999999
Q ss_pred hcCCCEEEEec
Q 008330 152 GNNNVMVILDN 162 (570)
Q Consensus 152 ~~~Gl~VILD~ 162 (570)
.++||+||||+
T Consensus 302 H~~Gi~VilD~ 312 (683)
T PRK09505 302 HQRGIRILFDV 312 (683)
T ss_pred HHCCCEEEEEE
Confidence 99999999994
No 85
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=85.25 E-value=3 Score=44.30 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCcEEEeccccc----ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLY----LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~----~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.++.++.++++|+.-|=|+--.+ |+..+ +.+..+. .. ..--+.+.+++++|++
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~-~t~~~v~----------------~~------~~krDiv~El~~A~rk 149 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSK-YTDYNVV----------------NS------GPKRDIVGELADACRK 149 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--T-T-SSBGG----------------GG------GGTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCC-CCccccc----------------CC------CCCCCHHHHHHHHHHH
Confidence 57889999999999988755321 22110 0011110 00 0123679999999999
Q ss_pred CCCEEEEecCCCCCCccccCCCCCCCCCCCC-----------CCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCC
Q 008330 154 NNVMVILDNHISKPGWCCSNSDGNGFFGDQY-----------FNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQN 222 (570)
Q Consensus 154 ~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~-----------~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~ 222 (570)
+||++.|=+|.. .|......... ..+.. +-.+.+..-++.|.++| .+.++-||.-....
T Consensus 150 ~Glk~G~Y~S~~--dw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~----- 219 (346)
T PF01120_consen 150 YGLKFGLYYSPW--DWHHPDYPPDE-EGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDP----- 219 (346)
T ss_dssp TT-EEEEEEESS--SCCCTTTTSSC-HCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCC-----
T ss_pred cCCeEEEEecch--HhcCcccCCCc-cCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCcc-----
Confidence 999999965543 34211100000 00000 00124556777888999 77888899987752
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 223 VKDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 223 ~~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
.+.|.. .+.++.||+..|+.+|.-.
T Consensus 220 ~~~~~~--~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 220 DEDWDS--AELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp CTHHHH--HHHHHHHHHHSTTSEEECC
T ss_pred ccccCH--HHHHHHHHHhCCeEEEecc
Confidence 234433 6788999999998877653
No 86
>PRK03705 glycogen debranching enzyme; Provisional
Probab=84.95 E-value=1.7 Score=50.09 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=44.4
Q ss_pred HHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCc--hHHHHHHHHHHHHhcCCCE
Q 008330 81 LSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDL--PLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 81 ~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~--t~l~~ld~vV~~a~~~Gl~ 157 (570)
.++.|+++|+|+|=| |+.... ..... .....-...|.. ....+..+|.+... ..++.|+++|++|.++||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~-~~~~~---~~~g~~~ywGYd--~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFA-SEPRL---QRMGLSNYWGYN--PLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCcccCC-Ccccc---cccccccccCcc--cccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 488999999999999 554311 10000 000000000100 00113345554321 2467899999999999999
Q ss_pred EEEe---cCCC
Q 008330 158 VILD---NHIS 165 (570)
Q Consensus 158 VILD---~H~~ 165 (570)
|||| +|..
T Consensus 258 VIlDvV~NHt~ 268 (658)
T PRK03705 258 VILDVVFNHSA 268 (658)
T ss_pred EEEEEcccCcc
Confidence 9999 4765
No 87
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=83.27 E-value=14 Score=37.08 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCc--cc---------CCCCCCCchHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI--QS---------NNPSIVDLPLIKAF 144 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~--~~---------~nP~~~~~t~l~~l 144 (570)
.++++.++.++++||..|=|..... . ....+++.++..|+.-....+ .. .+|. ......+.+
T Consensus 15 ~~l~~~l~~~a~~Gf~~VEl~~~~~-~-----~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 87 (258)
T PRK09997 15 YDFLARFEKAAQCGFRGVEFMFPYD-Y-----DIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPG-REEEFRDGV 87 (258)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCCCC-C-----CHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCC-cHHHHHHHH
Confidence 3689999999999999999844221 1 112344556666665321111 01 1232 123456789
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChh
Q 008330 145 QAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVK 224 (570)
Q Consensus 145 d~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~ 224 (570)
+++|+.|.+.|..+|.- |. ++. . .+ +. .....+.+.+.++.+++..+++.-++++|..|.+..+..
T Consensus 88 ~~~i~~a~~lga~~i~~-~~---g~~----~-~~-~~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~--- 153 (258)
T PRK09997 88 AAAIRYARALGNKKINC-LV---GKT----P-AG-FS-SEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGF--- 153 (258)
T ss_pred HHHHHHHHHhCCCEEEE-CC---CCC----C-CC-CC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCC---
Confidence 99999999999987653 21 110 0 00 00 001124456777888888877777899999886432111
Q ss_pred HHHHHHHHHHHHHHhcCCCcE-EEEeC
Q 008330 225 DWYRYMQLGAEAVHAANPEVL-VILSG 250 (570)
Q Consensus 225 ~W~~~~~~~~~aIr~~dp~~l-IiVeG 250 (570)
...-.+++.+.|+++++..+ +.++.
T Consensus 154 -~~~~~~~~~~ll~~v~~~~v~l~~D~ 179 (258)
T PRK09997 154 -HLTGTRQALKLIDDVGCCNLKIQYDI 179 (258)
T ss_pred -ccCCHHHHHHHHHHhCCCCEEEEeEH
Confidence 10112345566777775544 55553
No 88
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=80.59 E-value=15 Score=43.97 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=62.6
Q ss_pred CcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEe---cCCCCCCcc-ccCCCC--CCCC---------------CCCCC
Q 008330 127 GIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILD---NHISKPGWC-CSNSDG--NGFF---------------GDQYF 185 (570)
Q Consensus 127 g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD---~H~~~~~w~-~~~~dg--ng~~---------------~d~~~ 185 (570)
|-|..+|. +..-+..|+++|++|.++||.|||| +|....+.. .+.-+. .++| ++...
T Consensus 391 gSYatdp~--g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~ 468 (898)
T TIGR02103 391 GSYATDPE--GPARIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTAT 468 (898)
T ss_pred hhhccCCC--CchHHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCC
Confidence 44555563 3455778999999999999999999 576542210 000000 0111 11101
Q ss_pred -CH---HHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 186 -NP---DLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 186 -~~---~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
.+ +.+++..+.-++.|+ ....- ||++..-. ...| +++.+++++++|+.+++=|+
T Consensus 469 e~~~Vrk~iiDsl~~W~~ey~-VDGFR-fDlm~~~~-----~~f~----~~~~~~l~~i~pdi~l~GEg 526 (898)
T TIGR02103 469 EHRMMAKLIVDSLVVWAKDYK-VDGFR-FDLMGHHP-----KAQM----LAAREAIKALTPEIYFYGEG 526 (898)
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CCEEE-EechhhCC-----HHHH----HHHHHHHHHhCCCEEEEecC
Confidence 11 223344444455554 23443 88886542 2334 45667889999998888787
No 89
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.36 E-value=1.9 Score=48.63 Aligned_cols=64 Identities=23% Similarity=0.429 Sum_probs=47.8
Q ss_pred eeeeecCCCCceecCCC--CCCCCccccCCcceeecccceEEeeccCCccceeccccC--CCCCceeEee
Q 008330 421 LCVQRKSFLDPLTLGPC--TESEAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT--DCGSTWEIIS 486 (570)
Q Consensus 421 ~c~~~~~~~~~~~~~~c--~~~~~W~~~~~~~~~~~~~~~cl~a~~~g~~~~~~~~c~--~~~~~W~~~s 486 (570)
.|..+..... +.+.+| ..++.|.|..++.|.-+++++||++...+..+.+ ..|. ++.|+|.+..
T Consensus 507 ~cl~~~~~~~-v~l~~C~~~~~q~w~~~~~~~i~~~~sg~CL~~~~~~~~~~l-~~c~~~~~~Q~W~~~~ 574 (578)
T KOG3736|consen 507 LCLDVDDAGK-VTLYDCHKMGNQLWHYDKDGTLYHRNSGKCLEAAVDKNGLIL-VACDPSDPTQQWLFEH 574 (578)
T ss_pred EEeccccCCc-eEEEecccccccceEEcCCCceEcCCCCccccccCCCCCceE-eecCCCCCcceEEEEe
Confidence 6776632213 889999 4468999998888888899999999998765555 4444 5689999843
No 90
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=78.78 E-value=5.9 Score=46.71 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHcCCcEEEe-ccccccc-ccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 76 QPMDMLSKRVVDMGFNCVRL-TWPLYLA-TNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRl-Pi~~~~~-~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
..+.+.++.|+++||++|=| |+....- ....|. + ...+..||.+.+ .+.|+++|++|.+
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYd---v-------------~D~~~idp~lGt---~edf~~Lv~aah~ 76 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYD---V-------------VDHSEINPELGG---EEGLRRLSEAARA 76 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCC---C-------------CCCCCcCCCCCC---HHHHHHHHHHHHH
Confidence 44678899999999999987 5422100 000111 0 112355777654 5679999999999
Q ss_pred CCCEEEEe---cCCCC
Q 008330 154 NNVMVILD---NHISK 166 (570)
Q Consensus 154 ~Gl~VILD---~H~~~ 166 (570)
+||+||+| +|...
T Consensus 77 ~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 77 RGLGLIVDIVPNHMAV 92 (825)
T ss_pred CCCEEEEEeccccccc
Confidence 99999999 46653
No 91
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=78.65 E-value=5.4 Score=47.26 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHcCCcEEEe-ccccccc-ccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 76 QPMDMLSKRVVDMGFNCVRL-TWPLYLA-TNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRl-Pi~~~~~-~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
..+.+.++.|+++|||+|=| |+....- ....|. + ......||.+.+ .+.|+++|++|.+
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYd---v-------------~D~~~idp~lGt---~e~f~~Lv~aah~ 80 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYD---V-------------VDHTRINPELGG---EEGLRRLAAALRA 80 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCC---c-------------CCCCCcCCCCCC---HHHHHHHHHHHHH
Confidence 45778899999999999988 4422100 000111 0 011345777654 4679999999999
Q ss_pred CCCEEEEec---CCC
Q 008330 154 NNVMVILDN---HIS 165 (570)
Q Consensus 154 ~Gl~VILD~---H~~ 165 (570)
+||.||+|+ |..
T Consensus 81 ~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 81 HGMGLILDIVPNHMA 95 (879)
T ss_pred CCCEEEEEecccccc
Confidence 999999994 654
No 92
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=77.05 E-value=51 Score=34.68 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHcCC-cEEEecccccccccCccccchhhhhhhhc----cchhhccCcccCCCCCCCchHHHHHHHHHH
Q 008330 75 KQPMDMLSKRVVDMGF-NCVRLTWPLYLATNDSLASLTVRQSFQKL----GLLEAIGGIQSNNPSIVDLPLIKAFQAVVA 149 (570)
Q Consensus 75 ~~~~~~~~~~i~~~Gf-N~VRlPi~~~~~~~~~~~n~tv~~s~~~l----g~~~~~~g~~~~nP~~~~~t~l~~ld~vV~ 149 (570)
...+++.++.|++.|+ ++|=+|+..+ |+..|+..+++.+ .-......+...++...+..+++.+-..|.
T Consensus 101 ~P~i~~~v~~l~~~gv~~iv~~pLyPq------yS~sTt~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~ 174 (320)
T COG0276 101 PPFIEEAVEELKKDGVERIVVLPLYPQ------YSSSTTGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIR 174 (320)
T ss_pred CCcHHHHHHHHHHcCCCeEEEEECCcc------cccccHHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHH
Confidence 3447899999999999 6777888654 3333444444321 000011122233444445677888777775
Q ss_pred H-HhcC---CCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCcEEEEeccCCCCCCCCCh
Q 008330 150 S-LGNN---NVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFN--GVRNVVGMSLRNELRGPKQNV 223 (570)
Q Consensus 150 ~-a~~~---Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk--~~p~Vig~dL~NEP~~~~~~~ 223 (570)
. +++. ...+|+..|..+-.. .+ . +|.| +++..+.-+.|+++.+ ...-.++|.-..=|..--+
T Consensus 175 ~~~~~~~~~~~~llfSaHglP~~~----~~---~-GDpY--~~q~~~t~~li~e~lg~~~~~~~~~~QS~~G~~~WL~-- 242 (320)
T COG0276 175 EKLAKHPRDDDVLLFSAHGLPKRY----ID---E-GDPY--PQQCQETTRLIAEALGLPEEEYDLTFQSRFGPEPWLQ-- 242 (320)
T ss_pred HHHHhcCCCCeEEEEecCCCchhh----hh---c-CCch--HHHHHHHHHHHHHHcCCCchheeEEeecCCCCCCCCC--
Confidence 4 4443 699999999985211 11 1 4544 5667777788999988 5666888998655532111
Q ss_pred hHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 224 KDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 224 ~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
.+.++.++.+.+.+.+++|++.-
T Consensus 243 ----P~t~~~l~~L~~~g~k~iiv~pi 265 (320)
T COG0276 243 ----PYTDDLLEELGEKGVKKIIVVPI 265 (320)
T ss_pred ----CCHHHHHHHHHhcCCCeEEEECC
Confidence 22344555566667778888864
No 93
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=76.86 E-value=65 Score=33.48 Aligned_cols=145 Identities=10% Similarity=0.029 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
.++++++.|+.+|+|.+-|-+.. ++. |... ++. ..++..+ --+-+++++++|+++||
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D-~f~---~~~~-----------p~~-----~~~~~~y---T~~ei~ei~~yA~~~gI 74 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYED-TFP---YEGE-----------PEV-----GRMRGAY---TKEEIREIDDYAAELGI 74 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEec-cee---cCCC-----------ccc-----ccCCCCc---CHHHHHHHHHHHHHcCC
Confidence 36888999999999999986643 221 1110 010 0011111 23569999999999999
Q ss_pred EEEEecCCCC--------CCc--cccCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC-CC-----
Q 008330 157 MVILDNHISK--------PGW--CCSNSDGNGFFG-DQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR-GP----- 219 (570)
Q Consensus 157 ~VILD~H~~~--------~~w--~~~~~dgng~~~-d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~-~~----- 219 (570)
.||-.+-... +.. .+.......-.. ....+.+-..++++++++.|+..-=.+|.|=..+.. +.
T Consensus 75 ~vIPeid~pGH~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG~DE~~~~g~~~~~~~~ 154 (301)
T cd06565 75 EVIPLIQTLGHLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIGMDEAYDLGRGRSLRKH 154 (301)
T ss_pred EEEecCCCHHHHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEECCCcccccCCCHHHHHh
Confidence 9997653210 000 010000000000 000112333578888888888554457777555432 11
Q ss_pred --CCChhHHHHHHHHHHHHHHhcCCCc
Q 008330 220 --KQNVKDWYRYMQLGAEAVHAANPEV 244 (570)
Q Consensus 220 --~~~~~~W~~~~~~~~~aIr~~dp~~ 244 (570)
.+..+.+..+++++.+.|++.+++.
T Consensus 155 ~~~~~~~l~~~~~~~v~~~v~~~g~~~ 181 (301)
T cd06565 155 GNLGRGELYLEHLKKVLKIIKKRGPKP 181 (301)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1123456778899999999999843
No 94
>PLN00197 beta-amylase; Provisional
Probab=76.38 E-value=16 Score=40.90 Aligned_cols=59 Identities=10% Similarity=0.199 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.-++.+|+.|+.-|=+++-|-.++.+ .|..++ |..|.++++.+++.||+
T Consensus 129 l~~~L~~LK~~GVdGVmvDvWWGiVE~~--------------------------~p~~Yd---WsgY~~L~~mvr~~GLK 179 (573)
T PLN00197 129 MKASLQALKSAGVEGIMMDVWWGLVERE--------------------------SPGVYN---WGGYNELLEMAKRHGLK 179 (573)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeccC--------------------------CCCcCC---cHHHHHHHHHHHHcCCe
Confidence 6778899999999999999988666542 222232 56799999999999999
Q ss_pred E--EEecCCC
Q 008330 158 V--ILDNHIS 165 (570)
Q Consensus 158 V--ILD~H~~ 165 (570)
+ |+.+|..
T Consensus 180 lq~VmSFHqC 189 (573)
T PLN00197 180 VQAVMSFHQC 189 (573)
T ss_pred EEEEEEeccc
Confidence 5 7888974
No 95
>PLN02905 beta-amylase
Probab=76.25 E-value=13 Score=42.07 Aligned_cols=130 Identities=8% Similarity=0.165 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.-+..+|++|+.-|=+++-|-.++.+ .|..++ |..|.++++.+++.||+
T Consensus 288 l~a~L~aLK~aGVdGVmvDVWWGiVE~~--------------------------gP~~Yd---WsgY~~L~~mvr~~GLK 338 (702)
T PLN02905 288 LLKQLRILKSINVDGVKVDCWWGIVEAH--------------------------APQEYN---WNGYKRLFQMVRELKLK 338 (702)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeeeecC--------------------------CCCcCC---cHHHHHHHHHHHHcCCe
Confidence 5677889999999999999988666542 222232 56799999999999998
Q ss_pred E--EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH-----HhCC-----CCcEEEEeccCCCCCC-CCChh
Q 008330 158 V--ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT-----IFNG-----VRNVVGMSLRNELRGP-KQNVK 224 (570)
Q Consensus 158 V--ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~-----ryk~-----~p~Vig~dL~NEP~~~-~~~~~ 224 (570)
+ |+.+|... .+-|+. -.....+|+ |+ +++ -|++ ++.-|.+-.=|+|... ++..+
T Consensus 339 lqvVMSFHqCG------GNVGD~----~~IPLP~WV--~e-~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq 405 (702)
T PLN02905 339 LQVVMSFHECG------GNVGDD----VCIPLPHWV--AE-IGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALE 405 (702)
T ss_pred EEEEEEecccC------CCCCCc----ccccCCHHH--HH-hhhcCCCceEecCCCCccCceeeeecccccccCCCCHHH
Confidence 5 78889742 212211 001122343 11 111 1332 2334556666777533 33456
Q ss_pred HHHHHHHHHHHHHHhc-CCCcEEEEe
Q 008330 225 DWYRYMQLGAEAVHAA-NPEVLVILS 249 (570)
Q Consensus 225 ~W~~~~~~~~~aIr~~-dp~~lIiVe 249 (570)
.+..+|+.-.+..... +...++-|+
T Consensus 406 ~Y~DFM~SFr~~F~~fl~~g~I~eI~ 431 (702)
T PLN02905 406 VYFDYMRSFRVEFDEFFEDGVISMVE 431 (702)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 6667776666666553 334554444
No 96
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=75.43 E-value=5.8 Score=49.17 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccC-----cccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 80 MLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGG-----IQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 80 ~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g-----~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
+.++.|+++|+|+|=| |+... ..+.. +...|++ .+.| .+..+|.+.. ...+.|+++|++|.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~-~~~~~---------~~~~g~~-~yWGY~~~~yfa~dp~yg~-~~~~efk~lV~~~H~ 258 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFAS-VDEHH---------LPQLGLS-NYWGYNTVAFLAPDPRLAP-GGEEEFAQAIKEAQS 258 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCcccc-Ccccc---------cccccCc-CcCCCCCCCCCCcChhhcc-CcHHHHHHHHHHHHH
Confidence 5678999999999998 66431 11100 0001110 1112 2334555431 246789999999999
Q ss_pred CCCEEEEe---cCCCC
Q 008330 154 NNVMVILD---NHISK 166 (570)
Q Consensus 154 ~Gl~VILD---~H~~~ 166 (570)
+||.|||| +|...
T Consensus 259 ~GI~VILDvV~NHt~~ 274 (1221)
T PRK14510 259 AGIAVILDVVFNHTGE 274 (1221)
T ss_pred CCCEEEEEEccccccC
Confidence 99999999 47653
No 97
>PLN02705 beta-amylase
Probab=74.89 E-value=21 Score=40.42 Aligned_cols=131 Identities=8% Similarity=0.125 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+++-++.||++|+.-|=+++-|-.++.+ .|..+ -|..|.++++.+++.||+
T Consensus 270 l~a~L~aLK~aGVdGVmvDVWWGiVE~~--------------------------~P~~Y---dWsgY~~L~~mvr~~GLK 320 (681)
T PLN02705 270 VRQELSHMKSLNVDGVVVDCWWGIVEGW--------------------------NPQKY---VWSGYRELFNIIREFKLK 320 (681)
T ss_pred HHHHHHHHHHcCCCEEEEeeeeeEeecC--------------------------CCCcC---CcHHHHHHHHHHHHcCCe
Confidence 5677889999999999999988666542 12222 256799999999999999
Q ss_pred E--EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH----HhCC-----CCcEEEEeccCCCCCC-CCChhH
Q 008330 158 V--ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT----IFNG-----VRNVVGMSLRNELRGP-KQNVKD 225 (570)
Q Consensus 158 V--ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~----ryk~-----~p~Vig~dL~NEP~~~-~~~~~~ 225 (570)
+ |+.+|...+ +-|+. -.....+|+ |+...+ -|++ +..-|.+-.=++|.-. ++..+.
T Consensus 321 lqvVmSFHqCGG------NVGD~----~~IPLP~WV--~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~ 388 (681)
T PLN02705 321 LQVVMAFHEYGG------NASGN----VMISLPQWV--LEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEV 388 (681)
T ss_pred EEEEEEeeccCC------CCCCc----ccccCCHHH--HHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHH
Confidence 5 788997421 11110 001112232 111100 1222 2334556666777432 334566
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEe
Q 008330 226 WYRYMQLGAEAVHAA-NPEVLVILS 249 (570)
Q Consensus 226 W~~~~~~~~~aIr~~-dp~~lIiVe 249 (570)
+.++|+.-.+..... +...++-|+
T Consensus 389 Y~DFM~SFr~~F~~fl~~g~I~eI~ 413 (681)
T PLN02705 389 YFDFMRSFRSEFDDLFVEGLITAVE 413 (681)
T ss_pred HHHHHHHHHHHHHHhccCCceeEEE
Confidence 677776666666653 344554444
No 98
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=74.80 E-value=53 Score=32.74 Aligned_cols=154 Identities=9% Similarity=0.050 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCccc-----------CCCCCCCchHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQS-----------NNPSIVDLPLIKAF 144 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~-----------~nP~~~~~t~l~~l 144 (570)
.++++.++.++++||+.|=|...+..- -..++.-++..|+.-....... ..|+- .....+.+
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~------~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 86 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWD------AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGR-EEEFREGV 86 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCC------HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCcc-HHHHHHHH
Confidence 468999999999999999885532110 1123444555555422111000 01111 12346788
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChh
Q 008330 145 QAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVK 224 (570)
Q Consensus 145 d~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~ 224 (570)
+++|+.|.+.|..+|. .+.... ..+. +.....+.+++.++.+++.-+++.-.+++|..|-+..+.
T Consensus 87 ~~~i~~a~~lg~~~i~-~~~g~~-------~~~~---~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~---- 151 (254)
T TIGR03234 87 ALAIAYARALGCPQVN-CLAGKR-------PAGV---SPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPG---- 151 (254)
T ss_pred HHHHHHHHHhCCCEEE-ECcCCC-------CCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCC----
Confidence 9999999999998775 332110 0000 000112445677888887666666668888766443221
Q ss_pred HHHHHHHHHHHHHHhcCC-CcEEEEeCC
Q 008330 225 DWYRYMQLGAEAVHAANP-EVLVILSGL 251 (570)
Q Consensus 225 ~W~~~~~~~~~aIr~~dp-~~lIiVeG~ 251 (570)
.+-.-.+++.+.|++++. +.-|.++-.
T Consensus 152 ~~l~t~~~~~~li~~v~~~~~~i~~D~~ 179 (254)
T TIGR03234 152 FFLTTTEQALAVIDDVGRENLKLQYDLY 179 (254)
T ss_pred ChhcCHHHHHHHHHHhCCCCEeEeeehh
Confidence 122233566777888774 444555543
No 99
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=73.15 E-value=1.2e+02 Score=31.45 Aligned_cols=151 Identities=10% Similarity=0.046 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCCcEEEeccccc---ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLY---LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~---~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.++++++.|+..++|++-+-++.. .+.-..|+..+-. | .....+..+. .+ --+-+.++|++|++
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~------g---~~~~~~~~~~-~y---T~~di~elv~yA~~ 83 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEK------G---GQINPRSPGG-FY---TYAQLKDIIEYAAA 83 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhh------c---ccccCCCCCC-eE---CHHHHHHHHHHHHH
Confidence 367889999999999998876531 1111111111100 0 0000001111 11 23569999999999
Q ss_pred CCCEEEEecCCCC---------CCccccCCCCCCCCC--CC-----CCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 154 NNVMVILDNHISK---------PGWCCSNSDGNGFFG--DQ-----YFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 154 ~Gl~VILD~H~~~---------~~w~~~~~dgng~~~--d~-----~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
+||.||..+-... |.-.|....+..+.. +. ....+-..++++++++.|.+.-=.+|.|=.+...
T Consensus 84 rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~~iHiGgDE~~~~~ 163 (303)
T cd02742 84 RGIEVIPEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDRYLHIGGDEAHFKQ 163 (303)
T ss_pred cCCEEEEeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCCeEEecceecCCCC
Confidence 9999997653210 110111001111110 00 0112333578888999997655567777554331
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCC
Q 008330 218 GPKQNVKDWYRYMQLGAEAVHAANPE 243 (570)
Q Consensus 218 ~~~~~~~~W~~~~~~~~~aIr~~dp~ 243 (570)
...+.+..+++++.+.|++.+.+
T Consensus 164 ---~~~~l~~~f~~~~~~~v~~~g~~ 186 (303)
T cd02742 164 ---DRKHLMSQFIQRVLDIVKKKGKK 186 (303)
T ss_pred ---CHHHHHHHHHHHHHHHHHHcCCe
Confidence 22445677788899999988843
No 100
>PLN02803 beta-amylase
Probab=72.84 E-value=17 Score=40.41 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.-++.+|+.|+.-|=+++-|-.++.+ .|..++ |..|.++++.+++.||+
T Consensus 109 l~~~L~~LK~~GVdGVmvDVWWGiVE~~--------------------------~p~~Yd---WsgY~~l~~mvr~~GLK 159 (548)
T PLN02803 109 MNASLMALRSAGVEGVMVDAWWGLVEKD--------------------------GPMKYN---WEGYAELVQMVQKHGLK 159 (548)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeccC--------------------------CCCcCC---cHHHHHHHHHHHHcCCe
Confidence 6778899999999999999988666542 122232 56799999999999999
Q ss_pred E--EEecCCC
Q 008330 158 V--ILDNHIS 165 (570)
Q Consensus 158 V--ILD~H~~ 165 (570)
+ |+.+|+.
T Consensus 160 lq~vmSFHqC 169 (548)
T PLN02803 160 LQVVMSFHQC 169 (548)
T ss_pred EEEEEEeccc
Confidence 5 7888974
No 101
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=72.12 E-value=10 Score=48.19 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCcEEEe-ccccccc-ccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLYLA-TNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~~~-~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
+.+.++.|+++|||+|=| |+....- ....|. + ...+..||.+.+ .+.|+++|++|.++|
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYd---v-------------~D~~~idp~lG~---~edf~~Lv~~ah~~G 820 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYD---I-------------VDHSQINPEIGG---EEGFERFCAALKAHG 820 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCC---C-------------CCCCccCcccCC---HHHHHHHHHHHHHCC
Confidence 467788999999999988 4432100 000011 1 112355777754 567999999999999
Q ss_pred CEEEEe---cCCC
Q 008330 156 VMVILD---NHIS 165 (570)
Q Consensus 156 l~VILD---~H~~ 165 (570)
|+|||| +|..
T Consensus 821 i~vilDiV~NH~~ 833 (1693)
T PRK14507 821 LGQLLDIVPNHMG 833 (1693)
T ss_pred CEEEEEecccccC
Confidence 999999 4765
No 102
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=72.07 E-value=9.1 Score=42.10 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 76 QPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
+.+.+-++.|+++||++|=| |+.........|. + .-.+..+|.+. -++-+++.|++|.++
T Consensus 29 ~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~---~-------------~Dy~~id~~~G---t~~d~~~li~~~H~~ 89 (505)
T COG0366 29 KGITEKLDYLKELGVDAIWLSPIFESPQADHGYD---V-------------SDYTKVDPHFG---TEEDFKELVEEAHKR 89 (505)
T ss_pred HhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCcc---c-------------cchhhcCcccC---CHHHHHHHHHHHHHC
Confidence 34557789999999999977 4433211111111 0 01123455443 467799999999999
Q ss_pred CCEEEEec
Q 008330 155 NVMVILDN 162 (570)
Q Consensus 155 Gl~VILD~ 162 (570)
||+||+|+
T Consensus 90 gi~vi~D~ 97 (505)
T COG0366 90 GIKVILDL 97 (505)
T ss_pred CCEEEEEe
Confidence 99999996
No 103
>PRK09989 hypothetical protein; Provisional
Probab=71.60 E-value=78 Score=31.72 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCc--ccCCCC-----CC---CchHHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGI--QSNNPS-----IV---DLPLIKAFQ 145 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~--~~~nP~-----~~---~~t~l~~ld 145 (570)
.|+++.++.++++||..|=|...+. +....+++-++..|+.-...+. ...++. .. .....+.++
T Consensus 15 ~~l~~~l~~~~~~Gfd~VEl~~~~~------~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (258)
T PRK09989 15 VPFIERFAAARKAGFDAVEFLFPYD------YSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADID 88 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEECCccc------CCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHH
Confidence 4789999999999999998854322 1111234445556654221110 011110 00 123467799
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhH
Q 008330 146 AVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKD 225 (570)
Q Consensus 146 ~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~ 225 (570)
++|+.|.+.|...|. .|. ++.. .+ .+.....+..++.++.+++..++..-.+++|-+|.......-
T Consensus 89 ~~i~~A~~lg~~~v~-v~~---g~~~---~~----~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~--- 154 (258)
T PRK09989 89 LALEYALALNCEQVH-VMA---GVVP---AG----EDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYL--- 154 (258)
T ss_pred HHHHHHHHhCcCEEE-ECc---cCCC---CC----CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCc---
Confidence 999999999997663 221 2210 00 000011244678889999988888778889998864321111
Q ss_pred HHHHHHHHHHHHHhcCCCcE-EEEe
Q 008330 226 WYRYMQLGAEAVHAANPEVL-VILS 249 (570)
Q Consensus 226 W~~~~~~~~~aIr~~dp~~l-IiVe 249 (570)
+. -..++.+.|++++++.+ +.++
T Consensus 155 ~~-~~~~~~~ll~~v~~~~v~l~lD 178 (258)
T PRK09989 155 FS-SQYQALAIVEEVARDNVFIQLD 178 (258)
T ss_pred cC-CHHHHHHHHHHcCCCCeEEEee
Confidence 11 22456677888876554 4444
No 104
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=71.48 E-value=12 Score=39.12 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEe-cCCCCCCccccCCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCC---CcEE
Q 008330 140 LIKAFQAVVASLGNNNVMVILD-NHISKPGWCCSNSDGNGFFGDQ-YFNPDLWIKGLTKMATIFNGV---RNVV 208 (570)
Q Consensus 140 ~l~~ld~vV~~a~~~Gl~VILD-~H~~~~~w~~~~~dgng~~~d~-~~~~~~~~~~w~~iA~ryk~~---p~Vi 208 (570)
.++.+-..+..+++.|+-||+- +|...++| =||+.. ..+++.|+++|+.|.+++++. .|++
T Consensus 135 ~ld~iA~~l~~l~~~~vPVl~Rp~HE~nG~W--------fwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~~Nli 200 (311)
T PF02156_consen 135 DLDRIADFLKQLKDAGVPVLFRPFHEMNGGW--------FWWGAKGHCTPEQYKALWRHMVDYLRNVKGLHNLI 200 (311)
T ss_dssp HHHHHHHHHHHHHCTTS-EEEEESTSTTSSS--------STTSTTSTCHHHHHHHHHHHHHHHHHTTST-TSEE
T ss_pred HHHHHHHHHHHhhcCCCeEEEeehhhcCCCc--------cccCCCCCCCHHHHHHHHHHHHHHHHhccCCceEE
Confidence 4555556666778899999997 45555555 357654 345899999999999998653 4554
No 105
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=70.79 E-value=97 Score=33.49 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=91.4
Q ss_pred EEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecc----cccccccCccc-cchhhhhhhhccch--hhcc
Q 008330 54 VKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTW----PLYLATNDSLA-SLTVRQSFQKLGLL--EAIG 126 (570)
Q Consensus 54 v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi----~~~~~~~~~~~-n~tv~~s~~~lg~~--~~~~ 126 (570)
|-|.-|.|.|. +++-...-...+..+.++.++++||..|=++- .+..-..+.-. -..+++.++..|+. ....
T Consensus 11 ~~~w~~~~~~~-~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~ 89 (382)
T TIGR02631 11 FGLWTVGWVGR-DPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTT 89 (382)
T ss_pred EEeeccCCCCC-CCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 34555666665 22222212223578889999999999998752 22110000000 00233445556664 1111
Q ss_pred CcccCCC-----CCC--C----chHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHH
Q 008330 127 GIQSNNP-----SIV--D----LPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLT 195 (570)
Q Consensus 127 g~~~~nP-----~~~--~----~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~ 195 (570)
.... +| .+. + ...++.+.+.|+.|.+.|-..|+ +|. ++.....+.. .+.....+.+++.++
T Consensus 90 nl~~-~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa~~v~-v~~---G~~g~~~~~~---~d~~~a~~~~~e~L~ 161 (382)
T TIGR02631 90 NLFS-HPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYV-VWG---GREGAEYDGA---KDVRAALDRMREALN 161 (382)
T ss_pred cccC-CccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEE-Ecc---CCCCCcCccc---cCHHHHHHHHHHHHH
Confidence 1100 01 111 2 24578889999999999997653 232 2110000000 000011244567788
Q ss_pred HHHHHhCCC--CcEEEEecc-CCCCCCCCChhHHHHHHHHHHHHHHhcC-CCc-EEEEeC
Q 008330 196 KMATIFNGV--RNVVGMSLR-NELRGPKQNVKDWYRYMQLGAEAVHAAN-PEV-LVILSG 250 (570)
Q Consensus 196 ~iA~ryk~~--p~Vig~dL~-NEP~~~~~~~~~W~~~~~~~~~aIr~~d-p~~-lIiVeG 250 (570)
.+++.-++. .-.+++|-+ |||+... ...-+.++...|++++ |+. -|.++-
T Consensus 162 ~lae~A~~~G~GV~laLEp~p~~~~~~~-----ll~T~~~al~li~~v~~pn~vgl~lDv 216 (382)
T TIGR02631 162 LLAAYAEDQGYGLRFALEPKPNEPRGDI-----LLPTVGHALAFIETLERPELFGLNPET 216 (382)
T ss_pred HHHHHHHhhCCCcEEEEccCCCCCCcce-----ecCCHHHHHHHHHHcCCccceeEEEec
Confidence 888777654 235789988 7886421 1112245567777776 443 254553
No 106
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=69.59 E-value=42 Score=33.66 Aligned_cols=157 Identities=9% Similarity=0.163 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 139 PLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQ-YFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 139 t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~-~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
..++.+.++|..|.+.||.+|== .++ | -+|... ..+..+|++..+..++-=....-.+++|+|.-|.
T Consensus 93 ~aleiM~KaI~LA~dLGIRtIQL-----AGY-----D--VYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDtpf 160 (287)
T COG3623 93 QALEIMEKAIQLAQDLGIRTIQL-----AGY-----D--VYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDTPF 160 (287)
T ss_pred HHHHHHHHHHHHHHHhCceeEee-----ccc-----e--eeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecccHH
Confidence 46788999999999999999831 111 1 011111 1245788888877655444455578999999986
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCC----CCCcchhhhhcccCcCCCCCEEEEEeecCCCCC----C-CC
Q 008330 218 GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLN----FDKDLSFVRNQAVNLTFTGKLVFEAHWYGFTDG----Q-AW 288 (570)
Q Consensus 218 ~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~----w~~dl~~~~~~p~~l~~~~nlVys~H~Y~~~~~----~-~w 288 (570)
.. +..-|. ...+.++.-++-+....+ |++++.. .+. .+-.-|..+|.=..+.- . ..
T Consensus 161 m~--sIsk~~-------~~~~~I~sP~f~vYPDiGNlsaw~ndv~~----El~--lG~~~I~aiHlKDTy~vte~~~GqF 225 (287)
T COG3623 161 MN--SISKWL-------KYDKYINSPWFTVYPDIGNLSAWNNDVQS----ELQ--LGIDKIVAIHLKDTYAVTETSPGQF 225 (287)
T ss_pred HH--HHHHHH-------HHHHHhCCCcEEecCCcccHhhhhhhHHH----HHH--cCcCceEEEEecccccccccCCCcc
Confidence 53 344444 444556666666665543 5544321 122 23455678997653211 0 00
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHh--cCCCeEEeccccC
Q 008330 289 VDGNPNQVCGRVVDNVMRLSGFLLE--QGWPLFVSEFGAD 326 (570)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l~~--~g~Pv~iGEFG~~ 326 (570)
-+-+.-+.|.++.+.+.. +.+ ...|.+|.=|.-.
T Consensus 226 rdvpfGeG~Vdf~~~f~~----lk~~ny~gpfLIEMWse~ 261 (287)
T COG3623 226 RDVPFGEGCVDFEECFKT----LKQLNYRGPFLIEMWSET 261 (287)
T ss_pred ccCCcCCcchhHHHHHHH----HHHhCCCCceehhhhhhh
Confidence 011112235444444332 322 6688888766653
No 107
>PLN02161 beta-amylase
Probab=68.12 E-value=77 Score=35.35 Aligned_cols=130 Identities=9% Similarity=0.058 Sum_probs=75.1
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++.-++.+|+.|+.-|=+++-|-.++.+ .|..++ |..|+++++.+++.||+
T Consensus 119 l~~~L~~LK~~GVdGVmvDVWWGiVE~~--------------------------~p~~Yd---WsgY~~l~~mvr~~GLK 169 (531)
T PLN02161 119 LTVSLKALKLAGVHGIAVEVWWGIVERF--------------------------SPLEFK---WSLYEELFRLISEAGLK 169 (531)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeeeeecC--------------------------CCCcCC---cHHHHHHHHHHHHcCCe
Confidence 5777889999999999999988666542 222232 56799999999999998
Q ss_pred E--EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH----HhCC-----CCcEEEEeccCCCCCCC-CChhH
Q 008330 158 V--ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT----IFNG-----VRNVVGMSLRNELRGPK-QNVKD 225 (570)
Q Consensus 158 V--ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~----ryk~-----~p~Vig~dL~NEP~~~~-~~~~~ 225 (570)
+ |+.+|+..+. ++. +.+ ....+|+ |+...+ -|+| ++.-+.+-.=|+|.-.. ...+.
T Consensus 170 lq~vmSFHqCGGN--vGd-~~~-------IpLP~WV--~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~ 237 (531)
T PLN02161 170 LHVALCFHSNMHL--FGG-KGG-------ISLPLWI--REIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQC 237 (531)
T ss_pred EEEEEEecccCCC--CCC-ccC-------ccCCHHH--HhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHH
Confidence 5 7888974221 111 000 1112232 111110 1222 23345566667886543 33456
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEE
Q 008330 226 WYRYMQLGAEAVHAANPEVLVIL 248 (570)
Q Consensus 226 W~~~~~~~~~aIr~~dp~~lIiV 248 (570)
+.++|+.-.+.....=.+.++-|
T Consensus 238 Y~Dfm~SFr~~F~~~~~~~I~eI 260 (531)
T PLN02161 238 YEDFMLSFSTKFEPYIGNVIEEI 260 (531)
T ss_pred HHHHHHHHHHHHHHHhcCceEEE
Confidence 67777666666555433444433
No 108
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=67.47 E-value=1.5e+02 Score=31.03 Aligned_cols=168 Identities=14% Similarity=0.198 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
..+....+++.|+|.|=|- |. ..++.+....+++.+.++-+.++.+||+
T Consensus 59 ~~~YARllASiGINgvvlN------------NV-------------------Na~~~~Lt~~~l~~v~~lAdvfRpYGIk 107 (328)
T PF07488_consen 59 YRDYARLLASIGINGVVLN------------NV-------------------NANPKLLTPEYLDKVARLADVFRPYGIK 107 (328)
T ss_dssp HHHHHHHHHHTT--EEE-S-------------S-------------------S--CGGGSTTTHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHhhcCCceEEec------------cc-------------------ccChhhcCHHHHHHHHHHHHHHhhcCCE
Confidence 5677888999999999761 10 1123334456889999999999999999
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCcEEEEeccCCCCCCC---CChhHHHHHHHHH
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT-IFNGVRNVVGMSLRNELRGPK---QNVKDWYRYMQLG 233 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~-ryk~~p~Vig~dL~NEP~~~~---~~~~~W~~~~~~~ 233 (570)
|-|..--..|.- -|.---.|. .+ ++.++.|+..++ -|+--|..-||=+.=+-.+-. .-..+-.+-++-.
T Consensus 108 v~LSvnFasP~~-----lggL~TaDP-ld-~~V~~WW~~k~~eIY~~IPDfgGflVKAdSEGqPGP~~YgRthAdGANml 180 (328)
T PF07488_consen 108 VYLSVNFASPIE-----LGGLPTADP-LD-PEVRQWWKDKADEIYSAIPDFGGFLVKADSEGQPGPFTYGRTHADGANML 180 (328)
T ss_dssp EEEEE-TTHHHH-----TTS-S---T-TS-HHHHHHHHHHHHHHHHH-TT--EEEE--SBTTB--GGGGT--HHHHHHHH
T ss_pred EEEEeeccCCcc-----cCCcCcCCC-CC-HHHHHHHHHHHHHHHHhCCCccceEEEecCCCCCCCcccCCCchhhHHHH
Confidence 999876543310 010001122 23 456778877555 477778877776653322211 0012334455556
Q ss_pred HHHHHhcCCCcEEEEeCCCCC-----Ccchh--hh-----hcccCcCCCCCEEEEEeecCCCCCC
Q 008330 234 AEAVHAANPEVLVILSGLNFD-----KDLSF--VR-----NQAVNLTFTGKLVFEAHWYGFTDGQ 286 (570)
Q Consensus 234 ~~aIr~~dp~~lIiVeG~~w~-----~dl~~--~~-----~~p~~l~~~~nlVys~H~Y~~~~~~ 286 (570)
++|+... .-+||....-|+ .+... .+ -.|++-.|++|+|+.+- |+|-+||
T Consensus 181 A~Al~P~--GG~V~wRaFVY~~~~dw~d~~~DRakaAy~~F~pLDG~F~dNVilQiK-nGPiDFQ 242 (328)
T PF07488_consen 181 ARALKPH--GGIVIWRAFVYNCHQDWRDRKTDRAKAAYDEFKPLDGQFDDNVILQIK-NGPIDFQ 242 (328)
T ss_dssp HHHHGGG--T-EEEEE-----TT--TTTTTS-GGGHHHHHHGGGTT-S-TTEEEEEE-SSSSSS-
T ss_pred HHHhhcc--CCEEEEEeEeeccccccccccccHHHHHHhhccCCCCCcccceEEEee-cCCccCc
Confidence 6777555 367777765554 11111 00 12555457899999885 6777776
No 109
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=65.33 E-value=13 Score=39.00 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCC
Q 008330 139 PLIKAFQAVVASLGNNNVMVILDNHI 164 (570)
Q Consensus 139 t~l~~ld~vV~~a~~~Gl~VILD~H~ 164 (570)
.++.++++++++|.+.||+||+|.--
T Consensus 46 ~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 46 LYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 58899999999999999999999753
No 110
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=64.12 E-value=30 Score=30.24 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=37.6
Q ss_pred eeecc-cceEEeeccCCccceeccccC-CCCCceeEeeccccEEEEecCCCceEEEeecCCCce
Q 008330 451 ISLKG-AYFCLQAKHVGKPAKLGIICT-DCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNTI 512 (570)
Q Consensus 451 ~~~~~-~~~cl~a~~~g~~~~~~~~c~-~~~~~W~~~s~~~~~~~~~~~~~~~~cld~~~~~~~ 512 (570)
+.|+. ++++|.++.+|..+. .+... ++.+.|++.-.+...++.+..+|.+|+.+- +|.+
T Consensus 4 v~Lrs~~gkyl~~~~~g~~v~-a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~--~g~l 64 (119)
T cd00257 4 VVLRSVNGRYLSAEAGGDKVD-ANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADS--DGGV 64 (119)
T ss_pred EEEEEcCCCEEEEeccCCEEE-EcCccCCCceEEEEEECCCCeEEEEECCCcEEEEEC--CCCE
Confidence 44443 788898888884222 23333 446889886654444566678999999863 5544
No 111
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=64.09 E-value=1.5e+02 Score=31.07 Aligned_cols=160 Identities=12% Similarity=0.064 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHcCCcEEEeccccc-ccccCccccchhhhhhhhccc--hhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLY-LATNDSLASLTVRQSFQKLGL--LEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~-~~~~~~~~n~tv~~s~~~lg~--~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.++++++.|+..++|.+=+-++.. -+.-+.++..+-......... +....+. ..+..++ --+-++.+|+.|++
T Consensus 18 ~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~-~~~~~~Y---T~~di~eiv~yA~~ 93 (326)
T cd06564 18 FLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNL-TANDGYY---TKEEFKELIAYAKD 93 (326)
T ss_pred HHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCC-CCCCCcc---cHHHHHHHHHHHHH
Confidence 467889999999999999866531 111111111110000000000 0000000 0111122 23569999999999
Q ss_pred CCCEEEEecCCCC---------CCccccCCCCCCCCCCCC---CCH---HHHHHHHHHHHHHhC--CCCcEEEEeccCCC
Q 008330 154 NNVMVILDNHISK---------PGWCCSNSDGNGFFGDQY---FNP---DLWIKGLTKMATIFN--GVRNVVGMSLRNEL 216 (570)
Q Consensus 154 ~Gl~VILD~H~~~---------~~w~~~~~dgng~~~d~~---~~~---~~~~~~w~~iA~ryk--~~p~Vig~dL~NEP 216 (570)
+||.||-.+-... |.-.|... ..+..... ..+ +-..++++++++.|. +.-=.+|-|=.+.-
T Consensus 94 rgI~vIPEID~PGH~~a~~~~~pel~~~~~--~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~~~~~~HiGgDE~~~~ 171 (326)
T cd06564 94 RGVNIIPEIDSPGHSLAFTKAMPELGLKNP--FSKYDKDTLDISNPEAVKFVKALFDEYLDGFNPKSDTVHIGADEYAGD 171 (326)
T ss_pred cCCeEeccCCCcHHHHHHHHhhHHhcCCCc--ccCCCcccccCCCHHHHHHHHHHHHHHHHhcCCCCCEEEecccccccc
Confidence 9999996543210 11111110 00000000 112 223578888888898 44345676644443
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhcCCCcE
Q 008330 217 RGPKQNVKDWYRYMQLGAEAVHAANPEVL 245 (570)
Q Consensus 217 ~~~~~~~~~W~~~~~~~~~aIr~~dp~~l 245 (570)
....+.+..+++++.+.|++.+.+.+
T Consensus 172 ---~~~~~~~~~f~~~~~~~v~~~gk~~~ 197 (326)
T cd06564 172 ---AGYAEAFRAYVNDLAKYVKDKGKTPR 197 (326)
T ss_pred ---CccHHHHHHHHHHHHHHHHHcCCeEE
Confidence 22456677888999999999875543
No 112
>PLN02801 beta-amylase
Probab=63.89 E-value=56 Score=36.34 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
.+++-++.+|++|+.-|=+++-|-.++.+ .|..+ -|..++++++.+++.||
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~--------------------------~P~~Y---dWsgY~~l~~mvr~~GL 88 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESK--------------------------GPKQY---DWSAYRSLFELVQSFGL 88 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccC--------------------------CCCcc---CcHHHHHHHHHHHHcCC
Confidence 36788999999999999999988666542 12222 25679999999999999
Q ss_pred EE--EEecCCC
Q 008330 157 MV--ILDNHIS 165 (570)
Q Consensus 157 ~V--ILD~H~~ 165 (570)
++ |+.+|+.
T Consensus 89 Klq~vmSFHqC 99 (517)
T PLN02801 89 KIQAIMSFHQC 99 (517)
T ss_pred eEEEEEEeccc
Confidence 85 7899973
No 113
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.04 E-value=2e+02 Score=30.62 Aligned_cols=168 Identities=10% Similarity=0.070 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHcCCcEEEeccccc-c--cccCccccchhhhhhhhccchhhccCcccCCCCCC-CchHHHHHHHHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLY-L--ATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIV-DLPLIKAFQAVVASL 151 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~-~--~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~-~~t~l~~ld~vV~~a 151 (570)
..++++++.|+..++|.+-+-++.. . ++-..|+..+..+++......+ ......++.-. +.=--+-++++|+.|
T Consensus 18 ~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~--~~~~~~~~~~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 18 DEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIG--LPQGGGDGTPYGGFYTQEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCccccc--ccccccCCCccCceECHHHHHHHHHHH
Confidence 3467889999999999999866431 1 1111122222111110000000 00000011100 101246699999999
Q ss_pred hcCCCEEEEecCCC---------CCCccccCCCC----CCCCCCCCC---CH---HHHHHHHHHHHHHhCCCCcEEEEec
Q 008330 152 GNNNVMVILDNHIS---------KPGWCCSNSDG----NGFFGDQYF---NP---DLWIKGLTKMATIFNGVRNVVGMSL 212 (570)
Q Consensus 152 ~~~Gl~VILD~H~~---------~~~w~~~~~dg----ng~~~d~~~---~~---~~~~~~w~~iA~ryk~~p~Vig~dL 212 (570)
+++||.||..+-.. .|.-.|..... ......... ++ +-..++++++++.|.+.-=.+|.|=
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~lF~~~~iHiGgDE 175 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAELFPSPYIHIGGDE 175 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEeccc
Confidence 99999999765221 11111211110 000011111 12 2235678888988986655678875
Q ss_pred cCCCCCCC-------------CChhHH-HHHHHHHHHHHHhcCCCcE
Q 008330 213 RNELRGPK-------------QNVKDW-YRYMQLGAEAVHAANPEVL 245 (570)
Q Consensus 213 ~NEP~~~~-------------~~~~~W-~~~~~~~~~aIr~~dp~~l 245 (570)
.+.-.... .+..+. ..+++++.+.+++.+.+.+
T Consensus 176 ~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i 222 (357)
T cd06563 176 VPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMI 222 (357)
T ss_pred cCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 55432110 022233 4467888888888774433
No 114
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=62.89 E-value=13 Score=34.68 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=41.3
Q ss_pred cccceEEeeccCCccceeccccCCCC--CceeEeecccc--EEEEecCCCceEEEeecCCC------ceeecceeeeCCC
Q 008330 454 KGAYFCLQAKHVGKPAKLGIICTDCG--STWEIISDSKM--HLSSKADNGTTVCLDVDSSN------TIVTNTCKCLSRD 523 (570)
Q Consensus 454 ~~~~~cl~a~~~g~~~~~~~~c~~~~--~~W~~~s~~~~--~~~~~~~~~~~~cld~~~~~------~~~~~~c~c~~~~ 523 (570)
.+++.||.+.++|.-..- .|...+ |.|+++--++. +|.+ .++..||....++ ++-...| ...
T Consensus 59 ~~~~~CL~~~~~G~~~~~--~C~~~~~~q~F~iiPtttgAVQIks---~~~~~Cl~~~~~~~~~~~~~i~l~~C---d~~ 130 (150)
T PF03498_consen 59 PKTGTCLAAYGNGVFHYK--SCDQDNLEQVFSIIPTTTGAVQIKS---LSTGECLQTFNNSRTPIYYSIGLTPC---DKS 130 (150)
T ss_dssp TTTSEEEEEETTCEEEE----TTTCHGHH-EEEEEBTTS-EEEEE---TTT--EEEE-STTSS-SSEEEEEE------S-
T ss_pred CCCCcceeecCCCeEeec--ccCCCChhceEEEEEcCCCcEEEEe---cCCCceEEecCCCceeEEeeEEeeeC---CCc
Confidence 456679999888864333 299444 99999765554 5544 4677999997544 4455666 222
Q ss_pred CCCCccCceEEE
Q 008330 524 KTCDPASQWFKL 535 (570)
Q Consensus 524 ~~~~~~~~~~~~ 535 (570)
..=+...|||=.
T Consensus 131 ~~~~l~~lw~it 142 (150)
T PF03498_consen 131 KEINLDQLWFIT 142 (150)
T ss_dssp EEETGGGEEEEE
T ss_pred CCCCHHHcEEEc
Confidence 233667788743
No 115
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.83 E-value=38 Score=34.42 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+.++.+.+++.|++.+|=.. |+|.|-..+|+-+ .++.++.+.+.+.+.||.
T Consensus 31 ~~~~a~~~~~~g~~~~r~g~---------~kpRts~~sf~G~--------------------G~~gl~~L~~~~~~~Gl~ 81 (250)
T PRK13397 31 IRLAASSAKKLGYNYFRGGA---------YKPRTSAASFQGL--------------------GLQGIRYLHEVCQEFGLL 81 (250)
T ss_pred HHHHHHHHHHcCCCEEEecc---------cCCCCCCcccCCC--------------------CHHHHHHHHHHHHHcCCC
Confidence 55677789999999999632 3333433344322 246788889999999999
Q ss_pred EEEecCCCCCC-ccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHH
Q 008330 158 VILDNHISKPG-WCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEA 236 (570)
Q Consensus 158 VILD~H~~~~~-w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~a 236 (570)
++-+.|....- ......|- -+-+. ++. +-..+++.+|+. +.|-++ . ++...+..+|. .+++.
T Consensus 82 ~~Tev~d~~~v~~~~e~vdi-lqIgs--~~~-~n~~LL~~va~t--gkPVil----k---~G~~~t~~e~~----~A~e~ 144 (250)
T PRK13397 82 SVSEIMSERQLEEAYDYLDV-IQVGA--RNM-QNFEFLKTLSHI--DKPILF----K---RGLMATIEEYL----GALSY 144 (250)
T ss_pred EEEeeCCHHHHHHHHhcCCE-EEECc--ccc-cCHHHHHHHHcc--CCeEEE----e---CCCCCCHHHHH----HHHHH
Confidence 99999975310 00000000 00000 000 013456666653 444333 1 12122567775 45677
Q ss_pred HHhcCCCcEEEEe-CC
Q 008330 237 VHAANPEVLVILS-GL 251 (570)
Q Consensus 237 Ir~~dp~~lIiVe-G~ 251 (570)
|++.+...+++.+ |.
T Consensus 145 i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 145 LQDTGKSNIILCERGV 160 (250)
T ss_pred HHHcCCCeEEEEcccc
Confidence 8887777788887 64
No 116
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.80 E-value=1.4e+02 Score=29.95 Aligned_cols=158 Identities=8% Similarity=0.002 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHcCCcEEEecccc-cccccCcccc---chhhhhhhhccchhhcc----CcccCCCCCCC----chHHH
Q 008330 75 KQPMDMLSKRVVDMGFNCVRLTWPL-YLATNDSLAS---LTVRQSFQKLGLLEAIG----GIQSNNPSIVD----LPLIK 142 (570)
Q Consensus 75 ~~~~~~~~~~i~~~GfN~VRlPi~~-~~~~~~~~~n---~tv~~s~~~lg~~~~~~----g~~~~nP~~~~----~t~l~ 142 (570)
..++++.++.++++||..|=|.... +.+.++ ... ..+++.++..|++-..- ..+..|....+ ...++
T Consensus 12 ~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~-~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~ 90 (275)
T PRK09856 12 RLPIEHAFRDASELGYDGIEIWGGRPHAFAPD-LKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLD 90 (275)
T ss_pred eCCHHHHHHHHHHcCCCEEEEccCCccccccc-cCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHH
Confidence 3478999999999999999984321 111110 100 12334455556642110 00111211112 24678
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCC
Q 008330 143 AFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQN 222 (570)
Q Consensus 143 ~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~ 222 (570)
.+++.|+.|.+.|...|+- |....++ . .+.....+..++.++.+++.-+.+.-.+++|-++.....
T Consensus 91 ~~~~~i~~a~~lGa~~i~~-~~~~~~~-----~-----~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~--- 156 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI-SAAHAGY-----L-----TPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESN--- 156 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE-cCCCCCC-----C-----CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccc---
Confidence 8999999999999998854 2211110 0 011011345567777777777777667889976532211
Q ss_pred hhHHHHHHHHHHHHHHhcC-CCcEEEEeC
Q 008330 223 VKDWYRYMQLGAEAVHAAN-PEVLVILSG 250 (570)
Q Consensus 223 ~~~W~~~~~~~~~aIr~~d-p~~lIiVeG 250 (570)
.....+++.+.+++++ |+.-+.++-
T Consensus 157 ---~~~t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 157 ---VVCNANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred ---ccCCHHHHHHHHHHcCCCcceeEEee
Confidence 0111245567777776 565566654
No 117
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=60.90 E-value=40 Score=36.49 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=42.4
Q ss_pred EEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCC
Q 008330 54 VKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNP 133 (570)
Q Consensus 54 v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP 133 (570)
..|||.|..|.. +.- ..-++..++...+.|+.++|+ |. +||
T Consensus 82 MLlRGQNlvGYr-----hya-DDvVe~Fv~ka~~nGidvfRi-FD-------------------AlN------------- 122 (472)
T COG5016 82 MLLRGQNLVGYR-----HYA-DDVVEKFVEKAAENGIDVFRI-FD-------------------ALN------------- 122 (472)
T ss_pred HHHccCcccccc-----CCc-hHHHHHHHHHHHhcCCcEEEe-ch-------------------hcc-------------
Confidence 458999987653 110 012566777788999999998 21 111
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCEEEEec
Q 008330 134 SIVDLPLIKAFQAVVASLGNNNVMVILDN 162 (570)
Q Consensus 134 ~~~~~t~l~~ld~vV~~a~~~Gl~VILD~ 162 (570)
-...++..+++++++|..|..-+
T Consensus 123 ------D~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 123 ------DVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred ------chhHHHHHHHHHHhcCceeEEEE
Confidence 01237889999999999887654
No 118
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=60.70 E-value=71 Score=32.39 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++..++..+.+|.++||++-. ..... . ...+. -....+.+.++++.|.++|+.
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~~-~~~~~----~-~~~~~---------------------~~~~~~~l~~l~~~A~~~Gv~ 148 (279)
T TIGR00542 96 MEKAIQLARDLGIRTIQLAGY-DVYYE----E-HDEET---------------------RRRFREGLKEAVELAARAQVT 148 (279)
T ss_pred HHHHHHHHHHhCCCEEEecCc-ccccC----c-CCHHH---------------------HHHHHHHHHHHHHHHHHcCCE
Confidence 456677888999999998532 11000 0 00000 123567889999999999999
Q ss_pred EEEecCC
Q 008330 158 VILDNHI 164 (570)
Q Consensus 158 VILD~H~ 164 (570)
+.|-+|.
T Consensus 149 l~lE~~~ 155 (279)
T TIGR00542 149 LAVEIMD 155 (279)
T ss_pred EEEeeCC
Confidence 9999874
No 119
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=59.91 E-value=18 Score=41.53 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCcEEEe-ccccc--ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 79 DMLSKRVVDMGFNCVRL-TWPLY--LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRl-Pi~~~--~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
+...+.|+++|+++|=+ |+... .+..+ +. +.+...++.. . +..+|.+- -++-|+++++.|.++|
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~-~t-P~~D~gyDi~-------d-~~Idp~~G---T~eDf~~L~~~Ah~~G 143 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGRE-FT-PSIDGNFDRI-------S-FDIDPLLG---SEEELIQLSRMAAAHN 143 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccC-CC-CCCCCCCCcc-------c-CccCcccC---CHHHHHHHHHHHHHCC
Confidence 45678899999999988 44221 00000 00 0111111100 1 34567664 3567999999999999
Q ss_pred CEEEEec
Q 008330 156 VMVILDN 162 (570)
Q Consensus 156 l~VILD~ 162 (570)
|+||+|+
T Consensus 144 ~~vi~Dl 150 (688)
T TIGR02455 144 AITIDDI 150 (688)
T ss_pred CEEEEEe
Confidence 9999996
No 120
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.77 E-value=98 Score=30.79 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+++.++..+.+|..+||++..... .+.+..+. .....+.+.++++.|.++||.
T Consensus 86 ~~~~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~---------------------~~~~~~~l~~l~~~A~~~gi~ 138 (254)
T TIGR03234 86 VALAIAYARALGCPQVNCLAGKRP------AGVSPEEA---------------------RATLVENLRYAADALDRIGLT 138 (254)
T ss_pred HHHHHHHHHHhCCCEEEECcCCCC------CCCCHHHH---------------------HHHHHHHHHHHHHHHHhcCCE
Confidence 345677788999999998654310 01111111 123457789999999999999
Q ss_pred EEEecCC
Q 008330 158 VILDNHI 164 (570)
Q Consensus 158 VILD~H~ 164 (570)
+.|-.|.
T Consensus 139 l~lE~~~ 145 (254)
T TIGR03234 139 LLIEPIN 145 (254)
T ss_pred EEEEECC
Confidence 9998774
No 121
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=59.29 E-value=18 Score=39.20 Aligned_cols=129 Identities=5% Similarity=0.075 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
.++.-++.+|++|+..|=+++-|-.++.. .|..+ -|..++++.+.+++.||
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~--------------------------~p~~y---dWs~Y~~l~~~vr~~GL 67 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGE--------------------------GPQQY---DWSGYRELFEMVRDAGL 67 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGS--------------------------STTB------HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccC--------------------------CCCcc---CcHHHHHHHHHHHHcCC
Confidence 46788999999999999999988665542 12222 36779999999999999
Q ss_pred EE--EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH---HhCCCCcEEEEeccCCCCCCCCChhHHHHHHH
Q 008330 157 MV--ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT---IFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQ 231 (570)
Q Consensus 157 ~V--ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~---ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~ 231 (570)
++ |+.+|+..+ +-|+. -......|+ |+..++ -|++.....--|-+. |.....+.+....+|+
T Consensus 68 k~~~vmsfH~cGg------NvgD~----~~IpLP~Wv--~~~~~~~di~ytd~~G~rn~E~lS-p~~~grt~~~Y~dfm~ 134 (402)
T PF01373_consen 68 KLQVVMSFHQCGG------NVGDD----CNIPLPSWV--WEIGKKDDIFYTDRSGNRNKEYLS-PVLDGRTLQCYSDFMR 134 (402)
T ss_dssp EEEEEEE-S-BSS------STTSS----SEB-S-HHH--HHHHHHSGGEEE-TTS-EEEEEE--CTBTTBCHHHHHHHHH
T ss_pred eEEEEEeeecCCC------CCCCc----cCCcCCHHH--HhccccCCcEEECCCCCcCcceee-cccCCchHHHHHHHHH
Confidence 96 678897532 12210 011224552 222222 145554444445444 5433223555666666
Q ss_pred HHHHHHHhcCCCcEEEE
Q 008330 232 LGAEAVHAANPEVLVIL 248 (570)
Q Consensus 232 ~~~~aIr~~dp~~lIiV 248 (570)
.-.+..+..- +.+.-|
T Consensus 135 sF~~~f~~~~-~~I~~I 150 (402)
T PF01373_consen 135 SFRDNFSDYL-STITEI 150 (402)
T ss_dssp HHHHHCHHHH-TGEEEE
T ss_pred HHHHHHHHHH-hhheEE
Confidence 6655555443 444433
No 122
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=58.94 E-value=20 Score=35.07 Aligned_cols=44 Identities=18% Similarity=0.331 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 77 PMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
+.+..++.+++||.+.|.+ |+. ++..++.|.++.++|.++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~--------------------------------------Gl~~leE~~avAkA~a~~g 177 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMG--------------------------------------GLKHLEELKAVAKACARNG 177 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---T--------------------------------------TTTTHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHcCCCeeeEeecC--------------------------------------CcccHHHHHHHHHHHHHcC
Confidence 5789999999999999997 221 2356788999999999999
Q ss_pred CEE
Q 008330 156 VMV 158 (570)
Q Consensus 156 l~V 158 (570)
|++
T Consensus 178 ~~l 180 (218)
T PF07071_consen 178 FTL 180 (218)
T ss_dssp -EE
T ss_pred cee
Confidence 998
No 123
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=57.83 E-value=90 Score=27.15 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=42.3
Q ss_pred CCccccC--Ccceee-cccceEEeeccCCccceeccccCCCCCceeEeeccccEEEEecCCCceEEEeecCCCc
Q 008330 441 EAWSYTP--HKTISL-KGAYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNT 511 (570)
Q Consensus 441 ~~W~~~~--~~~~~~-~~~~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~~~~~~~~~~~~~~~~cld~~~~~~ 511 (570)
+.|..+. ++.+.| ..+++.|.+..+|. +..... -++...|++.-.+..+++++..+|.+|+.+. +|.
T Consensus 34 e~F~l~~~~~g~v~Lrs~~G~yls~~~~g~-l~~~~~-~~~~e~F~~e~~~~g~~al~~~~G~yl~~~~--~g~ 103 (119)
T cd00257 34 ETFTLEFDNTGKYALRSHDGKYLSADSDGG-VQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGDG--SGT 103 (119)
T ss_pred eEEEEEECCCCeEEEEECCCcEEEEECCCC-EEecCC-CCCCcEEEEEECCCCeEEEEcCCCCEEeecC--CCe
Confidence 5666653 344433 25888898888775 344333 4566778875444345666777999999875 554
No 124
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=56.18 E-value=12 Score=38.74 Aligned_cols=69 Identities=20% Similarity=0.147 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
-+++.++.|++.|+|++=+-+-.+ +++.|-+.+. .+ + .-....|| +.-+..+|+.|.++||
T Consensus 78 ~~de~fk~ikdn~~Na~ViD~Kdd------~G~lty~s~d-~~--~---~~~~sv~~-------f~Di~~~iKkaKe~gi 138 (400)
T COG1306 78 RLDELFKLIKDNNINAFVIDVKDD------YGELTYPSSD-EI--N---KYTKSVNK-------FKDIEPVIKKAKENGI 138 (400)
T ss_pred HHHHHHHHHHhCCCCEEEEEecCC------CccEeccccc-hh--h---hhhhcccc-------ccccHHHHHHHHhcCe
Confidence 368899999999999998876433 3333322110 00 0 00112233 2337899999999999
Q ss_pred EEEEecCC
Q 008330 157 MVILDNHI 164 (570)
Q Consensus 157 ~VILD~H~ 164 (570)
|+|--.-.
T Consensus 139 Y~IARiVv 146 (400)
T COG1306 139 YAIARIVV 146 (400)
T ss_pred EEEEEEEE
Confidence 99865443
No 125
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=54.59 E-value=17 Score=42.03 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 76 QPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
..+.+.++.++++|+-.+=+ |+-.. .+.+--...|-+ -...||.+.+. +.|.++|.+++++
T Consensus 19 ~~A~~~l~yl~~LGIShLY~SPIftA--~pGStHGYDVvD-------------~t~InPeLGG~---egl~rLvaalk~~ 80 (889)
T COG3280 19 ADARALLDYLADLGISHLYLSPIFTA--RPGSTHGYDVVD-------------PTEINPELGGE---EGLERLVAALKSR 80 (889)
T ss_pred HHHHHhhHHHHhcCchheeccchhhc--CCCCCCCccCCC-------------ccccChhhcCh---HHHHHHHHHHHhc
Confidence 45678899999999998877 44321 111000000000 02458887654 5688899999999
Q ss_pred CCEEEEec
Q 008330 155 NVMVILDN 162 (570)
Q Consensus 155 Gl~VILD~ 162 (570)
||-+|+|+
T Consensus 81 GlGlI~DI 88 (889)
T COG3280 81 GLGLIVDI 88 (889)
T ss_pred CCceEEEe
Confidence 99999994
No 126
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=54.38 E-value=42 Score=35.46 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhc-------------------cCcccCCC-CCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAI-------------------GGIQSNNP-SIV 136 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~-------------------~g~~~~nP-~~~ 136 (570)
..+..||.|+-.|+|.+=.++..+.+-. +-|..+|+++.. .|....-| ++.
T Consensus 20 rWEreIDWMALnGiNl~La~~GqEavw~---------~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~ 90 (333)
T PF05089_consen 20 RWEREIDWMALNGINLPLAIVGQEAVWQ---------RVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWI 90 (333)
T ss_dssp HHHHHHHHHHHTT--EEE--TTHHHHHH---------HHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHH
T ss_pred HHHHHHHHHHHhCCchhhhhhHHHHHHH---------HHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHH
Confidence 4688999999999999888776543321 223444544321 11111111 111
Q ss_pred CchHHHHHHHHHHHHhcCCCEEEEec---CCCC--------------CCccccCCCCCCCCCCC---CCCHHHHHHHHHH
Q 008330 137 DLPLIKAFQAVVASLGNNNVMVILDN---HISK--------------PGWCCSNSDGNGFFGDQ---YFNPDLWIKGLTK 196 (570)
Q Consensus 137 ~~t~l~~ld~vV~~a~~~Gl~VILD~---H~~~--------------~~w~~~~~dgng~~~d~---~~~~~~~~~~w~~ 196 (570)
..-.+.=+++++..++.||..||=- |... +.|+. . .+ ..+-+. .| .+--..+.+.
T Consensus 91 -~~q~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~-f-~~-~~~L~P~dplF-~~i~~~F~~~ 165 (333)
T PF05089_consen 91 -DQQAELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNG-F-CR-PYFLDPTDPLF-AEIAKLFYEE 165 (333)
T ss_dssp -HHHHHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETT-E-E---EEE-SS--HH-HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCC-C-CC-CceeCCCCchH-HHHHHHHHHH
Confidence 1122333588999999999998842 1111 12320 0 00 001111 11 1222456777
Q ss_pred HHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 197 MATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 197 iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
..+.|. ..++.+.|++||-..+....+...+..+++.+++.++||+.+=++.|
T Consensus 166 q~~~yG-~~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 166 QIKLYG-TDHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp HHHHH----SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred HHHhcC-CCceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 788887 88899999999987665444557778888999999999998777766
No 127
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=54.30 E-value=2.9e+02 Score=29.28 Aligned_cols=153 Identities=14% Similarity=0.046 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCcEEEeccccc---ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLY---LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~---~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.++++++.|+..++|++-+-++.+ -+.-..|+..+ + .|-+..+..+ --+-+..+|+.|++
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt-----------~--~ga~~~~~~Y----T~~di~eiv~yA~~ 81 (348)
T cd06562 19 SIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELS-----------K--KGAYSPSEVY----TPEDVKEIVEYARL 81 (348)
T ss_pred HHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhh-----------h--ccCcCCCceE----CHHHHHHHHHHHHH
Confidence 467889999999999998866431 11111111111 0 1111111111 23569999999999
Q ss_pred CCCEEEEec----CCCC-----CCccccCCCC-----CCCCCCC--CCCH---HHHHHHHHHHHHHhCCCCcEEEEeccC
Q 008330 154 NNVMVILDN----HISK-----PGWCCSNSDG-----NGFFGDQ--YFNP---DLWIKGLTKMATIFNGVRNVVGMSLRN 214 (570)
Q Consensus 154 ~Gl~VILD~----H~~~-----~~w~~~~~dg-----ng~~~d~--~~~~---~~~~~~w~~iA~ryk~~p~Vig~dL~N 214 (570)
+||.||..+ |... |.-.+...+. ..-.... .-++ +-..++++.+++.|.+.-=.+|-|=.+
T Consensus 82 rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~iHiGgDE~~ 161 (348)
T cd06562 82 RGIRVIPEIDTPGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKYFHLGGDEVN 161 (348)
T ss_pred cCCEEEEeccCchhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcceEeecCCCC
Confidence 999999765 3211 1001110000 0000000 0012 223467888888887655567777555
Q ss_pred CCCCCC-------------CChhH-HHHHHHHHHHHHHhcCCCcEE
Q 008330 215 ELRGPK-------------QNVKD-WYRYMQLGAEAVHAANPEVLV 246 (570)
Q Consensus 215 EP~~~~-------------~~~~~-W~~~~~~~~~aIr~~dp~~lI 246 (570)
...... .+..+ +..+++++.+.|++.+...++
T Consensus 162 ~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~ 207 (348)
T cd06562 162 FNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIV 207 (348)
T ss_pred CCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 432110 11222 234677888889988855443
No 128
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=54.14 E-value=28 Score=43.42 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=58.5
Q ss_pred CC-CEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccC
Q 008330 50 NG-HRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGG 127 (570)
Q Consensus 50 ~G-~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g 127 (570)
+| +.+.|-|++.......+. |- ....++.++.|+++|+|+|=+ |+...--.+-.|+ +. -
T Consensus 108 ~~~~~lPl~~i~iqTvlsK~m--G~-~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ys---i~-------------D 168 (1464)
T TIGR01531 108 NADKFLPLDSIALQTVLAKLL--GP-LSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYS---LY-------------D 168 (1464)
T ss_pred CCCcccCcCceeeeeehhhhc--CC-HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCcc---cc-------------c
Confidence 45 666666666543322111 10 033678899999999999998 5542111111121 11 1
Q ss_pred cccCCCCCCC-chHHHHHHHHHHHHhcC-CCEEEEe---cCCC
Q 008330 128 IQSNNPSIVD-LPLIKAFQAVVASLGNN-NVMVILD---NHIS 165 (570)
Q Consensus 128 ~~~~nP~~~~-~t~l~~ld~vV~~a~~~-Gl~VILD---~H~~ 165 (570)
....||.+.. ....+.++++|+.+.+. ||+||+| +|..
T Consensus 169 yl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa 211 (1464)
T TIGR01531 169 QLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFNHTA 211 (1464)
T ss_pred hhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeecccc
Confidence 1355777642 12457799999999996 9999999 4654
No 129
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.11 E-value=1.1e+02 Score=30.85 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++..++..+.+|...|+++-....... +-.... ....+.++.+.+.|.++|+.
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~~~~~~~~------~~~~~~---------------------~~~~~~l~~l~~~A~~~GV~ 153 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAGYDVYYEQ------ANNETR---------------------RRFIDGLKESVELASRASVT 153 (283)
T ss_pred HHHHHHHHHHcCCCEEEECCccccccc------cHHHHH---------------------HHHHHHHHHHHHHHHHhCCE
Confidence 456678888999999998521100000 000000 13467789999999999999
Q ss_pred EEEecCC
Q 008330 158 VILDNHI 164 (570)
Q Consensus 158 VILD~H~ 164 (570)
+.+-+|.
T Consensus 154 i~iE~~~ 160 (283)
T PRK13209 154 LAFEIMD 160 (283)
T ss_pred EEEeecC
Confidence 9999884
No 130
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=52.76 E-value=1.3e+02 Score=33.15 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcCCC-EEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC
Q 008330 141 IKAFQAVVASLGNNNV-MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl-~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~ 219 (570)
.+.+.++|+.+.+.|+ .|-+|+-..-|+ .+.+.|.+.++.+.+. +-..|-.+.|.++|...
T Consensus 186 ~~~~~~ai~~l~~~G~~~v~~dli~GlPg----------------qt~e~~~~~l~~~~~l--~~~~i~~y~l~~~p~~~ 247 (453)
T PRK09249 186 FEFTFALVEAARELGFTSINIDLIYGLPK----------------QTPESFARTLEKVLEL--RPDRLAVFNYAHVPWLF 247 (453)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCC----------------CCHHHHHHHHHHHHhc--CCCEEEEccCccchhhh
Confidence 4567788999999999 677776543221 3567787777776652 22335456666555431
Q ss_pred ----------CCChhHHHHHHHHHHHHHHhcC
Q 008330 220 ----------KQNVKDWYRYMQLGAEAVHAAN 241 (570)
Q Consensus 220 ----------~~~~~~W~~~~~~~~~aIr~~d 241 (570)
..+.++....++.+.+...+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~G 279 (453)
T PRK09249 248 KAQRKIDEADLPSPEEKLAILQQTIETLTEAG 279 (453)
T ss_pred hHhcCCCcccCCCHHHHHHHHHHHHHHHHHCC
Confidence 0134455556666666666554
No 131
>PRK12677 xylose isomerase; Provisional
Probab=52.42 E-value=2.8e+02 Score=30.01 Aligned_cols=177 Identities=12% Similarity=0.123 Sum_probs=86.1
Q ss_pred EEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccccccccCcccc-------chhhhhhhhccchhh--c
Q 008330 55 KLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLAS-------LTVRQSFQKLGLLEA--I 125 (570)
Q Consensus 55 ~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n-------~tv~~s~~~lg~~~~--~ 125 (570)
-|.-|.|.|. +|+-+..-...+.++.++.+++.||..|=+... +++--+ .+. ..+++-++..|+.-. .
T Consensus 11 ~~w~~~~~~~-~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~-~l~p~~-~~~~~~~~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 11 GLWTVGWQGR-DPFGDATRPPLDPVEAVHKLAELGAYGVTFHDD-DLVPFG-ATDAERDRIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred EEeeccCCCC-CCCCCCCCCCCCHHHHHHHHHHhCCCEEEeccc-ccCCCC-CChhhhHHHHHHHHHHHHHcCCeeEEEe
Confidence 3555666665 333222222345889999999999999977421 111000 000 012233444555411 1
Q ss_pred cCcccCCC-----CCC------CchHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCC--CCCCCCHHHHHH
Q 008330 126 GGIQSNNP-----SIV------DLPLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFF--GDQYFNPDLWIK 192 (570)
Q Consensus 126 ~g~~~~nP-----~~~------~~t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~--~d~~~~~~~~~~ 192 (570)
...+ .+| .+. ....++.+.++|+.|.+.|...|+= |. ++ ++.... .+.....+.+.+
T Consensus 88 ~n~f-~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv-~~---G~-----~g~~~~~~~d~~~a~~~~~e 157 (384)
T PRK12677 88 TNLF-THPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVM-WG---GR-----EGAEYDAAKDVRAALDRYRE 157 (384)
T ss_pred cCCC-CCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE-ee---CC-----CCccCcccCCHHHHHHHHHH
Confidence 1101 011 111 1235778999999999999976543 21 21 111000 010011344566
Q ss_pred HHHHHHHHhCC--CCcEEEEecc-CCCCCCCCChhHHHHHHHHHHHHHHhcC-CCcE-EEEe
Q 008330 193 GLTKMATIFNG--VRNVVGMSLR-NELRGPKQNVKDWYRYMQLGAEAVHAAN-PEVL-VILS 249 (570)
Q Consensus 193 ~w~~iA~ryk~--~p~Vig~dL~-NEP~~~~~~~~~W~~~~~~~~~aIr~~d-p~~l-IiVe 249 (570)
.++.|++.-++ +.-.+++|-+ |||+... -..++ .++...|+.++ |+.+ |.++
T Consensus 158 aL~~l~~~A~~~G~gV~laIEpkp~ep~~~~-~l~t~----~~al~li~~lg~~~~vGv~lD 214 (384)
T PRK12677 158 AIDLLAAYVKDQGYDLRFALEPKPNEPRGDI-LLPTV----GHALAFIATLEHPEMVGLNPE 214 (384)
T ss_pred HHHHHHHHHHhcCCCcEEEEccCCCCCCCCe-eeCCH----HHHHHHHHHhCCCccEEEeee
Confidence 77778777655 3345789876 4665421 11222 33445566665 4423 4544
No 132
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=51.10 E-value=48 Score=33.39 Aligned_cols=56 Identities=20% Similarity=0.110 Sum_probs=34.3
Q ss_pred HHHHHHHhCCC---CcEEEEeccCCCCCCC----------CChhHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 194 LTKMATIFNGV---RNVVGMSLRNELRGPK----------QNVKDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 194 w~~iA~ryk~~---p~Vig~dL~NEP~~~~----------~~~~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
...|..+|... ..|-+|.|=|||..-. -+.++...-..+.+++||+++|...|+=.
T Consensus 110 V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~GP 178 (239)
T PF12891_consen 110 VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVFGP 178 (239)
T ss_dssp HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEeec
Confidence 35566777644 4588899999996411 13455666666888999999999876653
No 133
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.89 E-value=26 Score=34.67 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 76 QPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
-|.+..++.+++||.+.|.+ |+. ++..++.|.++.++|.++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~--------------------------------------Gl~~leE~~avA~aca~~ 176 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG--------------------------------------GLKHLEEYAAVAKACAKH 176 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC--------------------------------------CcccHHHHHHHHHHHHHc
Confidence 35789999999999999997 221 234677888888999999
Q ss_pred CCE
Q 008330 155 NVM 157 (570)
Q Consensus 155 Gl~ 157 (570)
|++
T Consensus 177 g~~ 179 (236)
T TIGR03581 177 GFY 179 (236)
T ss_pred CCc
Confidence 987
No 134
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=50.78 E-value=1.5e+02 Score=30.02 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+...++..+++|.+.|++....... . +.++.+ ....+.+.++++.|.++||.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~~~~-~------~~~~~~---------------------~~~~~~l~~l~~~a~~~gi~ 138 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGSYLG-Q------SKEEGL---------------------KRVIEALNELIDKAETKGVV 138 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCC-C------CHHHHH---------------------HHHHHHHHHHHHhccCCCCE
Confidence 4566777888999999884432110 0 011111 23567888999999999999
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcE-EEEeccCC
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNV-VGMSLRNE 215 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~V-ig~dL~NE 215 (570)
+.|-+|..... .+ ..+.+++.++++.+- +.|++ +-+|+.|=
T Consensus 139 l~lEn~~~~~~----------~~---~~t~~~~~~li~~v~----~~~~~g~~lD~~h~ 180 (279)
T cd00019 139 IALETMAGQGN----------EI---GSSFEELKEIIDLIK----EKPRVGVCIDTCHI 180 (279)
T ss_pred EEEeCCCCCCC----------CC---CCCHHHHHHHHHhcC----CCCCeEEEEEhhhH
Confidence 99988854310 01 123455555555552 24554 55888773
No 135
>PRK04302 triosephosphate isomerase; Provisional
Probab=50.32 E-value=2.6e+02 Score=27.49 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-
Q 008330 142 KAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK- 220 (570)
Q Consensus 142 ~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~- 220 (570)
+.+...++.|.++||.+|++.|.. ++.. .+ .+..+.+++|+-.+= .+..
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~----------------------~~~~----~~---~~~~~~~I~~~p~~~-igt~~ 150 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNP----------------------ETSA----AA---AALGPDYVAVEPPEL-IGTGI 150 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCH----------------------HHHH----HH---hcCCCCEEEEeCccc-cccCC
Confidence 447889999999999999986631 1111 11 122355777765321 1111
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 221 QNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 221 ~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
.....-...+++..+.||+..++..|+++|
T Consensus 151 ~~~~~~~~~i~~~~~~ir~~~~~~pvi~Gg 180 (223)
T PRK04302 151 PVSKAKPEVVEDAVEAVKKVNPDVKVLCGA 180 (223)
T ss_pred CCCcCCHHHHHHHHHHHHhccCCCEEEEEC
Confidence 000011234567778898876677777765
No 136
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=50.12 E-value=1.7e+02 Score=30.43 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC
Q 008330 141 IKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK 220 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~ 220 (570)
.+.+.++++.+.++|+.|.+++=.--|+ .+.+.+.+..+.+.+. + -..|-.+-|.-+|.-+-
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI~GlPg----------------et~e~~~~t~~~l~~l-~-~d~i~i~~l~~~pgT~L 223 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVILGLPG----------------EDREEMMETAKIVSLL-D-VDGIKIHPLHVVKGTKM 223 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEEECCCC----------------CCHHHHHHHHHHHHhc-C-CCEEEEEEEEecCCCHH
Confidence 4567788999999999977654322111 2457777766665442 2 22344566666665321
Q ss_pred ------C--ChhHHHHHHHHHHHHHHhcCCCcEEE
Q 008330 221 ------Q--NVKDWYRYMQLGAEAVHAANPEVLVI 247 (570)
Q Consensus 221 ------~--~~~~W~~~~~~~~~aIr~~dp~~lIi 247 (570)
+ ...++..+++.++..++...|+..|.
T Consensus 224 ~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~ 258 (302)
T TIGR01212 224 AKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIH 258 (302)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEE
Confidence 0 12346677888888888888876543
No 137
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=48.89 E-value=3.9e+02 Score=29.86 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCCEEEEecCC--CCCCccccCCCCC-CC---------CCC--C--CCCHHHHHHHHHHHHHHhCCCC
Q 008330 142 KAFQAVVASLGNNNVMVILDNHI--SKPGWCCSNSDGN-GF---------FGD--Q--YFNPDLWIKGLTKMATIFNGVR 205 (570)
Q Consensus 142 ~~ld~vV~~a~~~Gl~VILD~H~--~~~~w~~~~~dgn-g~---------~~d--~--~~~~~~~~~~w~~iA~ryk~~p 205 (570)
+-+..||++|.-+||.|+..+-. ..+.|.-+..+-+ .- ++. . ...-+...++.+.|++-|.+.-
T Consensus 250 eDv~evV~yarlRGIRVlpEfD~PgHt~sWg~g~~~fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~ 329 (542)
T KOG2499|consen 250 EDVSEVVEYARLRGIRVLPEFDTPGHTGSWGPGYPDFLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEF 329 (542)
T ss_pred HHHHHHHHHHHhccceeeecccCCcccccccCCCCcccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHH
Confidence 45789999999999999976532 2234643322200 00 111 0 0112444567788888887543
Q ss_pred cEEEEeccCCCCCCC-CChhH--------------HHHHHHHHHHHHHhcCCC
Q 008330 206 NVVGMSLRNELRGPK-QNVKD--------------WYRYMQLGAEAVHAANPE 243 (570)
Q Consensus 206 ~Vig~dL~NEP~~~~-~~~~~--------------W~~~~~~~~~aIr~~dp~ 243 (570)
-.+|-|=.+-+-... ....+ ...|.+...+.|-+.|..
T Consensus 330 ~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~ 382 (542)
T KOG2499|consen 330 FHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKT 382 (542)
T ss_pred eecCCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCce
Confidence 334433333221111 01112 233556677777777665
No 138
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=48.71 E-value=29 Score=38.27 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=34.8
Q ss_pred CCCeEEeccccCCCCC-------CcchHHHHHHHHHHHH---HCCC---ceEEeccCceeecccCccCCCceeeeecCC
Q 008330 315 GWPLFVSEFGADLRGN-------NVNDNRYLNCFFGVAA---ELDW---DWALWTLVGSYYLREGVIGLNEYYGLFDWN 380 (570)
Q Consensus 315 g~Pv~iGEFG~~~~~~-------~~~~~~~~~~~~~~~~---~~gi---gw~~W~~~G~y~~r~~~~~~~et~Gll~~d 380 (570)
..|++|+|.|+...+. +..+..|++..+..+. +.|+ |+++|++-..|-.. .+....|||+-=|
T Consensus 355 ~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~---~Gy~~rfGl~~VD 430 (455)
T PF00232_consen 355 NPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWA---EGYKKRFGLVYVD 430 (455)
T ss_dssp SSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGG---GGGGSE--SEEEE
T ss_pred CCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccc---cCccCccCceEEc
Confidence 3999999999976553 2335566666555544 4564 79999986555333 2446789986433
No 139
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=48.15 E-value=2.6e+02 Score=27.94 Aligned_cols=155 Identities=10% Similarity=0.001 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHcCCcEEEeccccc-ccccCcccc---chhhhhhhhccchhhccCcccCCCCCCCc----hHHHHHHHHH
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLY-LATNDSLAS---LTVRQSFQKLGLLEAIGGIQSNNPSIVDL----PLIKAFQAVV 148 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~-~~~~~~~~n---~tv~~s~~~lg~~~~~~g~~~~nP~~~~~----t~l~~ld~vV 148 (570)
+++..++.++++||+.|-|-...- .+....+.. ..+++.+...|+.-...+-+..|+.-.+. ..++.+.+++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 466778888888888888854321 111100111 11223334444432111112223332222 3567799999
Q ss_pred HHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC-CCChhHHH
Q 008330 149 ASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP-KQNVKDWY 227 (570)
Q Consensus 149 ~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~-~~~~~~W~ 227 (570)
+.|.+.|..+|+ +|.. +. .. .+.....+.+++.++.+++. .+.-.+++|-++-.... ..+..++
T Consensus 91 ~~A~~lGa~~vv-~h~g---~~-----~~---~~~e~~~~~~~~~l~~l~~~--~~gv~l~lEn~~~~~~~~~~~~~~~- 155 (273)
T smart00518 91 KRCEELGIKALV-FHPG---SY-----LK---QSKEEALNRIIESLNEVIDE--TKGVVILLETTAGKGSQIGSTFEDL- 155 (273)
T ss_pred HHHHHcCCCEEE-Eccc---cc-----cC---CCHHHHHHHHHHHHHHHHhc--cCCcEEEEeccCCCCCccCCCHHHH-
Confidence 999999998665 4642 11 00 00011134556788888773 33334667766432211 1233333
Q ss_pred HHHHHHHHHHHhcC--CCcEEEEeCCC
Q 008330 228 RYMQLGAEAVHAAN--PEVLVILSGLN 252 (570)
Q Consensus 228 ~~~~~~~~aIr~~d--p~~lIiVeG~~ 252 (570)
.+.++.++ |+.-+.++-.+
T Consensus 156 ------~~ll~~v~~~~~~g~~lD~gH 176 (273)
T smart00518 156 ------KEIIDLIKELDRIGVCIDTCH 176 (273)
T ss_pred ------HHHHHhcCCCCCeEEEEEccc
Confidence 23334444 56667776543
No 140
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=47.97 E-value=56 Score=27.86 Aligned_cols=85 Identities=9% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHHHHHH---HHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Q 008330 140 LIKAFQAVVA---SLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNEL 216 (570)
Q Consensus 140 ~l~~ld~vV~---~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP 216 (570)
|++.+...++ ...+.+++|++|.++-.+ ...+..|.+++.- .+ .++-.+|
T Consensus 3 Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~-----------------------~~~~~~ll~~lg~--~~--~~~n~~~ 55 (104)
T PF02879_consen 3 YIESLLSFIDILEAIKKSGLKIVVDCMNGAG-----------------------SDILPRLLERLGC--DV--IELNCDP 55 (104)
T ss_dssp HHHHHHHTSCHHHHHHHTTCEEEEE-TTSTT-----------------------HHHHHHHHHHTTC--EE--EEESSS-
T ss_pred HHHHHhhhccchhhcccCCCEEEEECCCCHH-----------------------HHHHHHHHHHcCC--cE--EEEeccc
Confidence 5555555544 778999999999765321 1346667776655 23 3344445
Q ss_pred CCCC---CChhHHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 217 RGPK---QNVKDWYRYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 217 ~~~~---~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
.+.. .........++++.+.+++.+.+.-+.+.|.
T Consensus 56 d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~DgD 93 (104)
T PF02879_consen 56 DPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFDGD 93 (104)
T ss_dssp STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-TT
T ss_pred ccccccccccccccchhHHHHHHhhccCceEEEEECCc
Confidence 4421 1111111455677888899888888887763
No 141
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.91 E-value=2.5e+02 Score=28.30 Aligned_cols=180 Identities=10% Similarity=0.013 Sum_probs=95.1
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccc--cccCcccc---chhhhhhhhccchhhc--c-CcccCCCCCCC----chHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYL--ATNDSLAS---LTVRQSFQKLGLLEAI--G-GIQSNNPSIVD----LPLIKA 143 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~--~~~~~~~n---~tv~~s~~~lg~~~~~--~-g~~~~nP~~~~----~t~l~~ 143 (570)
.++++.++.+++.||..|=|.+.... .....+.. ..++..++..|+.-.. . .....++...+ ...++.
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~ 100 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEI 100 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHH
Confidence 36889999999999999998764210 00000111 1223344555553210 0 00111222112 246778
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCC
Q 008330 144 FQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGD-QYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQN 222 (570)
Q Consensus 144 ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d-~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~ 222 (570)
++++|+.|.+.|..+|. +|.... + ++. .....+.+++.++.+++.-+.+.-++++|..+.+... +
T Consensus 101 ~~~~i~~a~~lG~~~i~-~~~~~~-~----------~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~--~ 166 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQ-LAGYDV-Y----------YEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMN--S 166 (283)
T ss_pred HHHHHHHHHHcCCCEEE-ECCccc-c----------ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccC--C
Confidence 99999999999999875 442210 0 000 0112355677888888777766667889876443221 1
Q ss_pred hhHHHHHHHHHHHHHHhcC-CCcEEEEeCCC---CCCcchhhhhcccCcCCCCCEEEEEeecCC
Q 008330 223 VKDWYRYMQLGAEAVHAAN-PEVLVILSGLN---FDKDLSFVRNQAVNLTFTGKLVFEAHWYGF 282 (570)
Q Consensus 223 ~~~W~~~~~~~~~aIr~~d-p~~lIiVeG~~---w~~dl~~~~~~p~~l~~~~nlVys~H~Y~~ 282 (570)
. .++.+.|++++ |+.-+.++-.+ ++.+.... +. .....|..+|.-..
T Consensus 167 ---~----~~~~~ll~~v~~~~lgl~~D~~h~~~~~~~~~~~----i~--~~~~~i~~vHikD~ 217 (283)
T PRK13209 167 ---I----SKALGYAHYLNSPWFQLYPDIGNLSAWDNDVQME----LQ--AGIGHIVAFHVKDT 217 (283)
T ss_pred ---H----HHHHHHHHHhCCCccceEeccchHHHhcCCHHHH----HH--hCcCcEEEEEeccC
Confidence 1 24556666766 44445555432 22222111 11 11345678887653
No 142
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=47.50 E-value=1.4e+02 Score=30.51 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCC
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNN 155 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~G 155 (570)
.+++..++.++++||.-|-= |+.--+. +...++.|+..|+ .++.==+.|..|.+.|
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~N-fPTvgli-----DG~fR~~LEe~Gm------------------gy~~EVemi~~A~~~g 150 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQN-FPTVGLI-----DGQFRQNLEETGM------------------GYDREVEMIRKAHEKG 150 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE--S-GGG-------HHHHHHHHHTT--------------------HHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHhCCceEEE-CCcceee-----ccHHHHHHHhcCC------------------CHHHHHHHHHHHHHCC
Confidence 56899999999999998862 3221111 1234455554443 1222236788899999
Q ss_pred CEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEecc-CCC--CCC--CCChhHHHHHH
Q 008330 156 VMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLR-NEL--RGP--KQNVKDWYRYM 230 (570)
Q Consensus 156 l~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~-NEP--~~~--~~~~~~W~~~~ 230 (570)
|.-+-= .|++++..++-+. +- .|+..-+- ..= .+. ..+.++=...+
T Consensus 151 l~T~~y----------------------vf~~e~A~~M~~A------Ga-Diiv~H~GlT~gG~~Ga~~~~sl~~a~~~~ 201 (268)
T PF09370_consen 151 LFTTAY----------------------VFNEEQARAMAEA------GA-DIIVAHMGLTTGGSIGAKTALSLEEAAERI 201 (268)
T ss_dssp -EE--E----------------------E-SHHHHHHHHHH------T--SEEEEE-SS----------S--HHHHHHHH
T ss_pred Ceeeee----------------------ecCHHHHHHHHHc------CC-CEEEecCCccCCCCcCccccCCHHHHHHHH
Confidence 876531 1455655443322 11 12222220 000 000 11456667788
Q ss_pred HHHHHHHHhcCCCcEEEEeCC
Q 008330 231 QLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 231 ~~~~~aIr~~dp~~lIiVeG~ 251 (570)
+++.++.++++|+.++++-|-
T Consensus 202 ~~i~~aa~~v~~dii~l~hGG 222 (268)
T PF09370_consen 202 QEIFDAARAVNPDIIVLCHGG 222 (268)
T ss_dssp HHHHHHHHCC-TT-EEEEECT
T ss_pred HHHHHHHHHhCCCeEEEEeCC
Confidence 999999999999999999763
No 143
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=47.11 E-value=30 Score=37.04 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCCC
Q 008330 139 PLIKAFQAVVASLGNNNVMVILDNHIS 165 (570)
Q Consensus 139 t~l~~ld~vV~~a~~~Gl~VILD~H~~ 165 (570)
.+++.++.++++|.++||.||+|+...
T Consensus 44 ~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 44 DYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 578999999999999999999998643
No 144
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=46.05 E-value=23 Score=40.86 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCcEEEe-ccccc--ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcC
Q 008330 78 MDMLSKRVVDMGFNCVRL-TWPLY--LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNN 154 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRl-Pi~~~--~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~ 154 (570)
++.++..||++|.|+|-| |+..+ ....-.|. ++ .-| ++...|...+. . --+..++.+|++|-..
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~--~~-nFF-------apssrYgt~~s-~--~ri~efK~lVd~aHs~ 323 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQ--VT-NFF-------APSSRYGTPES-P--CRINEFKELVDKAHSL 323 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcc--ee-Eee-------cccccccCCCc-c--cchHHHHHHHHHHhhC
Confidence 355689999999999999 55332 11110110 00 000 01111222222 1 1266799999999999
Q ss_pred CCEEEEec
Q 008330 155 NVMVILDN 162 (570)
Q Consensus 155 Gl~VILD~ 162 (570)
||-||||+
T Consensus 324 GI~VlLDV 331 (757)
T KOG0470|consen 324 GIEVLLDV 331 (757)
T ss_pred CcEEehhh
Confidence 99999995
No 145
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=45.84 E-value=3.8e+02 Score=28.12 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=85.0
Q ss_pred CCChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhcc--chhh--c-cCcccCCCCCCCchHHHHHHHH
Q 008330 74 SKQPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLG--LLEA--I-GGIQSNNPSIVDLPLIKAFQAV 147 (570)
Q Consensus 74 ~~~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg--~~~~--~-~g~~~~nP~~~~~t~l~~ld~v 147 (570)
+...+++.++.|++.|++-|-+ |+..+ |+..|....++.+. +.+. . +.+...++...+..+++.+-..
T Consensus 102 ~~P~i~~~l~~l~~~G~~~iv~lPL~Pq------yS~~t~gs~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~yi~a~~~~ 175 (322)
T TIGR00109 102 GEPFTEEAVKELLKDGVERAVVLPLYPH------FSSSTTGSSFNELAEALKKLRSLRPTISVIESWYDNPKYIKALADS 175 (322)
T ss_pred CCCCHHHHHHHHHhcCCCeEEEEeCCcc------cccccHHHHHHHHHHHHHhcccCCCeEEEeCccccCcHHHHHHHHH
Confidence 3345788999999999987766 66533 22223332222110 0000 0 1122223333455677777766
Q ss_pred HHHHh----c-CCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC-CCcEEEEeccCCCCCCCC
Q 008330 148 VASLG----N-NNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNG-VRNVVGMSLRNELRGPKQ 221 (570)
Q Consensus 148 V~~a~----~-~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~-~p~Vig~dL~NEP~~~~~ 221 (570)
|.... . ....+|+..|..+-.- .+ -+|.| +++..+.-+.|+++.+. .+-.++|.-.--|.
T Consensus 176 I~~~l~~~~~~~~~~llfSaHglP~~~----~~----~Gd~Y--~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~---- 241 (322)
T TIGR00109 176 IKETLASFPEPDNAVLLFSAHGLPQSY----VD----EGDPY--PAECEATTRLIAEKLGFPNEYRLTWQSRVGPE---- 241 (322)
T ss_pred HHHHHHhcCCcCCcEEEEeCCCCchhH----hh----CCCCh--HHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCC----
Confidence 66442 1 2468999999986211 01 12333 46777777888888873 33455776643331
Q ss_pred ChhHH-HHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 222 NVKDW-YRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 222 ~~~~W-~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
.| ..+.++.++.+.+.+.+++++|.-
T Consensus 242 ---~Wl~P~~~~~l~~l~~~G~k~V~vvP~ 268 (322)
T TIGR00109 242 ---PWLGPYTEELLEKLGEQGVQHIVVVPI 268 (322)
T ss_pred ---CcCCCCHHHHHHHHHHcCCceEEEECC
Confidence 13 223455666777778788888764
No 146
>PLN02449 ferrochelatase
Probab=45.42 E-value=4.4e+02 Score=29.56 Aligned_cols=154 Identities=11% Similarity=0.058 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccc--hhh----ccCcccCCCCCCCchHHHHHHHH
Q 008330 75 KQPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGL--LEA----IGGIQSNNPSIVDLPLIKAFQAV 147 (570)
Q Consensus 75 ~~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~--~~~----~~g~~~~nP~~~~~t~l~~ld~v 147 (570)
...+++.++.|++.|++-|-+ |+..+ |+..|...+++.+.- ... ...+........++.+++.+-..
T Consensus 190 ~P~iedal~~l~~~G~~~iVvLPLYPQ------yS~sTtgSs~~~l~~~~~~~~~~~~~~~~~I~~~~~~p~yI~A~a~~ 263 (485)
T PLN02449 190 HPFTEEAIDQIKADGITKLVVLPLYPQ------FSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYVKAMADL 263 (485)
T ss_pred CCCHHHHHHHHHhcCCCeEEEEECCcc------cccccHHHHHHHHHHHHhhcccccCCeeEEeccccCChHHHHHHHHH
Confidence 344788899999999987665 66443 333344444433200 000 00111122233355677777766
Q ss_pred HHHHh-c----CCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC----CCcEEEEeccCCCCC
Q 008330 148 VASLG-N----NNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNG----VRNVVGMSLRNELRG 218 (570)
Q Consensus 148 V~~a~-~----~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~----~p~Vig~dL~NEP~~ 218 (570)
|.... + ...++|+..|..+-.. .+. -+|.| +++..+.-+.|+++.+. .+-.++|.-+=-|.
T Consensus 264 I~~~l~~~~~~~~~~LlFSAHGlP~~~----v~~---~GDpY--~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~- 333 (485)
T PLN02449 264 IKKELAKFSDPEEVHIFFSAHGVPVSY----VEE---AGDPY--KAQMEECVDLIMEELKARGILNRHTLAYQSRVGPV- 333 (485)
T ss_pred HHHHHHhccCcCCcEEEEecCCChhhh----hhh---cCCCh--HHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCC-
Confidence 66442 2 2488999999986221 101 12444 57777788888888864 34456677643331
Q ss_pred CCCChhHH-HHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 219 PKQNVKDW-YRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 219 ~~~~~~~W-~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
.| ..+.++.++.+.+.+-+.+++|.-
T Consensus 334 ------eWL~P~t~d~L~~L~~~Gvk~VlvvPi 360 (485)
T PLN02449 334 ------EWLKPYTDETIVELGKKGVKSLLAVPI 360 (485)
T ss_pred ------CCCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 23 234456666666677777777764
No 147
>PLN02849 beta-glucosidase
Probab=45.19 E-value=67 Score=36.06 Aligned_cols=67 Identities=22% Similarity=0.545 Sum_probs=42.7
Q ss_pred cCC-CeEEeccccCCCCC------CcchHHHHHHHHHHHHH---CC---CceEEeccCceeecccCccCCCceeeeecCC
Q 008330 314 QGW-PLFVSEFGADLRGN------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWN 380 (570)
Q Consensus 314 ~g~-Pv~iGEFG~~~~~~------~~~~~~~~~~~~~~~~~---~g---igw~~W~~~G~y~~r~~~~~~~et~Gll~~d 380 (570)
.+. ||+|+|-|....+. +..+..|++.-+..+.+ .| .|+++|++-..|-.. .+....|||+-=|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~---~Gy~~RfGLi~VD 459 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELL---KGYEFSFGLYSVN 459 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEEC
Confidence 445 79999999874321 23355677766665543 45 479999986544332 3356789998655
Q ss_pred CCC
Q 008330 381 WCD 383 (570)
Q Consensus 381 w~~ 383 (570)
..+
T Consensus 460 ~~~ 462 (503)
T PLN02849 460 FSD 462 (503)
T ss_pred CCC
Confidence 554
No 148
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=44.52 E-value=4e+02 Score=28.04 Aligned_cols=148 Identities=12% Similarity=0.054 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHh--CCCCcEE-----EEeccCCCCCCC-CChhHHHHHHHHHHHHHHhcCCCcEEEEeC-CCCCCcch
Q 008330 188 DLWIKGLTKMATIF--NGVRNVV-----GMSLRNELRGPK-QNVKDWYRYMQLGAEAVHAANPEVLVILSG-LNFDKDLS 258 (570)
Q Consensus 188 ~~~~~~w~~iA~ry--k~~p~Vi-----g~dL~NEP~~~~-~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG-~~w~~dl~ 258 (570)
.+|.+++..-..+. ++...|. +|+..+|+.... ....+-.++..++++.+|+..|+.+||..+ ...-....
T Consensus 143 ~~W~~il~~rl~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~~~~ 222 (315)
T TIGR01370 143 PEWKAIAFSYLDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLRDDH 222 (315)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhhccc
Confidence 34655554444555 5777665 333344432211 123456667777778889999998887643 22111000
Q ss_pred hhhhcccCcCCCCCEEEEEeecCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCcchHHHH
Q 008330 259 FVRNQAVNLTFTGKLVFEAHWYGFTDGQAWVDGNPNQVCGRVVDNVMRLSGFLLEQGWPLFVSEFGADLRGNNVNDNRYL 338 (570)
Q Consensus 259 ~~~~~p~~l~~~~nlVys~H~Y~~~~~~~w~~~~~~~~~~~~~~~~~~~~g~l~~~g~Pv~iGEFG~~~~~~~~~~~~~~ 338 (570)
..+ .+.-+-++.+-=+|..+.. .. +.-.+.+......+.+.|+||++=|+..+..... .+..-.
T Consensus 223 ----g~~-~~~idgV~~Eslf~~~~~~------~~----e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~~~-~n~~~~ 286 (315)
T TIGR01370 223 ----GGL-AATVSGWAVEELFYYAANR------PT----EAERQRRLLALYRLWQQGKFVLTVDYVDDGTKTN-ENPARM 286 (315)
T ss_pred ----cch-hhhceEEEecceEEcCCCC------CC----HHHHHHHHHHHHHHHHCCCcEEEEEecCCcccch-hhHHHH
Confidence 000 0111222222222332111 01 1111111122223445799999999987643322 234456
Q ss_pred HHHHHHHHHCCCc
Q 008330 339 NCFFGVAAELDWD 351 (570)
Q Consensus 339 ~~~~~~~~~~gig 351 (570)
+.+.++++++|..
T Consensus 287 ~~~~~~~~~~Gf~ 299 (315)
T TIGR01370 287 KDAAEKARAAGLI 299 (315)
T ss_pred HHHHHHHHHcCCe
Confidence 7788888888873
No 149
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=44.23 E-value=2.5e+02 Score=28.44 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhc----cCc-------ccCCCCCCCchHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAI----GGI-------QSNNPSIVDLPLIKAF 144 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~----~g~-------~~~nP~~~~~t~l~~l 144 (570)
.|..+=++..+++||-.|=.-|+++.. ..-+.+-++..+|+... +|. ...-|+.. ...-+-+
T Consensus 15 ~pFl~Rf~aaa~aGF~~ve~lfPyd~~------~~~i~~~l~~~~L~~~Lfn~pagDw~~gErg~aalp~r~-~~fr~~v 87 (260)
T COG3622 15 VPFLERFAAAAKAGFRGVEFLFPYDYD------AEELKARLDFNGLTQVLFNLPAGDWAAGERGIAALPGRE-EEFRLGV 87 (260)
T ss_pred CcHHHHHHHHHHcCCceEEEcCCCccc------HHHHHHHHHHcCCceeeeCCCCcchhhhhcchhcCCCch-HHHHhHH
Confidence 356667888899999999998887532 12334445555554321 111 11223322 2344557
Q ss_pred HHHHHHHhcCC---CEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCC
Q 008330 145 QAVVASLGNNN---VMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ 221 (570)
Q Consensus 145 d~vV~~a~~~G---l~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~ 221 (570)
+..+++|...| |.++.-. .| .+. +.......+++-++..|+++....-++.+|-+|--..|+.
T Consensus 88 ~~a~~ya~aLg~~~vh~mag~---~p-------~~~----~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~~d~PG~ 153 (260)
T COG3622 88 ALAIEYATALGCKQVHCLAGI---PP-------EGV----DTEAMWATFVENLRYAADLLAAEGIRLLIEPLNLRDMPGY 153 (260)
T ss_pred HHHHHHHHHhCCCceeeeecC---CC-------CCc----cHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCc
Confidence 88888888877 2232211 11 000 0101134578889999999998887778999987443321
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCcE
Q 008330 222 NVKDWYRYMQLGAEAVHAANPEVL 245 (570)
Q Consensus 222 ~~~~W~~~~~~~~~aIr~~dp~~l 245 (570)
......++...|++++...|
T Consensus 154 ----~l~~~~~al~li~~V~~~Nl 173 (260)
T COG3622 154 ----FLTSQEQALALIDEVGRPNL 173 (260)
T ss_pred ----ccccHHHHHHHHHHhCCCCe
Confidence 11222456677777765544
No 150
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=43.90 E-value=2.1e+02 Score=31.50 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~ 219 (570)
.+.+.++|+.+.+.|+. |-+|+-..-|+ .+.+.|.+.++.+.+ ++ -..|-.|.+...|...
T Consensus 187 ~~~~~~ai~~lr~~G~~~v~~dli~GlPg----------------qt~e~~~~tl~~~~~-l~-p~~i~~y~l~~~p~~~ 248 (453)
T PRK13347 187 EEMVARAVELLRAAGFESINFDLIYGLPH----------------QTVESFRETLDKVIA-LS-PDRIAVFGYAHVPSRR 248 (453)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeEEEeCCC----------------CCHHHHHHHHHHHHh-cC-CCEEEEeccccccchh
Confidence 45678889999999986 66775332121 357888887777764 22 2235456666666421
Q ss_pred C----------CChhHHHHHHHHHHHHHHhcCC
Q 008330 220 K----------QNVKDWYRYMQLGAEAVHAANP 242 (570)
Q Consensus 220 ~----------~~~~~W~~~~~~~~~aIr~~dp 242 (570)
. .+.++-...++.+.+.+.+.+=
T Consensus 249 ~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy 281 (453)
T PRK13347 249 KNQRLIDEAALPDAEERLRQARAVADRLLAAGY 281 (453)
T ss_pred hHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC
Confidence 0 1233445556666677766653
No 151
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=43.87 E-value=2.1e+02 Score=30.53 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~ 219 (570)
.+.+.++|+.+.+.|+. |-+|+-..-|+ .+.+.+.+.++.+.+ ++ -+.|-.|.|.-||.-+
T Consensus 135 ~~~~~~~i~~l~~~g~~~v~~dli~GlPg----------------qt~~~~~~~l~~~~~-l~-~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 135 EEDVYEAIANAKKAGFDNISIDLIYALPG----------------QTIEDFKESLAKALA-LD-IPHYSAYSLILEPKTV 196 (377)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeecCCCC----------------CCHHHHHHHHHHHHc-cC-CCEEeeeceeecCCCh
Confidence 45677889999999986 55665432221 356777777766544 32 3345567777777532
Q ss_pred C-----------CChhHHHHHHHHHHHHHHhcC
Q 008330 220 K-----------QNVKDWYRYMQLGAEAVHAAN 241 (570)
Q Consensus 220 ~-----------~~~~~W~~~~~~~~~aIr~~d 241 (570)
. .+.+.....++.+.+.+.+.+
T Consensus 197 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G 229 (377)
T PRK08599 197 FYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHG 229 (377)
T ss_pred hHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 122334445556666666654
No 152
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=43.70 E-value=3.6e+02 Score=29.50 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEE
Q 008330 79 DMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMV 158 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~V 158 (570)
++.++.++++|+|.|-|.+.. +.+ +.+..+| - ....+.+.++|+.+.+.|+.+
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS--~~~---------~~L~~l~------------R----~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQS--FHD---------SELHALH------------R----PQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred HHHHHHHHHcCCCEEEEeccc--CCH---------HHHHHhC------------C----CCCHHHHHHHHHHHHHcCCCe
Confidence 677888899999876665532 211 0111111 0 012456778899999999976
Q ss_pred E-EecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-----CChhHHHHHHHH
Q 008330 159 I-LDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK-----QNVKDWYRYMQL 232 (570)
Q Consensus 159 I-LD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~-----~~~~~W~~~~~~ 232 (570)
| +|+=..-|+ .+.+.|.+.++.+.+ .+ -+.+-.|.|.=||.-+- ...+.....++.
T Consensus 194 i~~dlI~GlP~----------------qt~e~~~~~l~~~~~-l~-~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~ 255 (430)
T PRK08208 194 LNIDLIYGIPG----------------QTHASWMESLDQALV-YR-PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRL 255 (430)
T ss_pred EEEEeecCCCC----------------CCHHHHHHHHHHHHh-CC-CCEEEEccccccCCCccchhcCCCHHHHHHHHHH
Confidence 4 775322121 456788777777654 22 23455677777775431 122344455555
Q ss_pred HHHHHHhcC
Q 008330 233 GAEAVHAAN 241 (570)
Q Consensus 233 ~~~aIr~~d 241 (570)
+.+...+.+
T Consensus 256 ~~~~L~~~G 264 (430)
T PRK08208 256 ARDLLLEAG 264 (430)
T ss_pred HHHHHHHcC
Confidence 556555554
No 153
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=43.57 E-value=37 Score=38.53 Aligned_cols=69 Identities=14% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccC-ccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATND-SLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~-~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..+-++.|+++||++|=|+=-......+ .|.. + -.+..||.+. -++-+.++|+++.+.||
T Consensus 42 I~~kldyi~~lG~taiWisP~~~s~~~~~GY~~----~------------d~~~l~p~fG---t~edf~~Li~~~h~~gi 102 (545)
T KOG0471|consen 42 ITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDA----S------------DLEQLRPRFG---TEEDFKELILAMHKLGI 102 (545)
T ss_pred chhhhhHHHhcCCceEEeCCCcCCCHHHhccCc----c------------chhhhccccc---HHHHHHHHHHHHhhcce
Confidence 4556899999999999883222221110 0100 0 1133456553 46779999999999999
Q ss_pred EEEEec---CCC
Q 008330 157 MVILDN---HIS 165 (570)
Q Consensus 157 ~VILD~---H~~ 165 (570)
++|+|+ |..
T Consensus 103 ~ii~D~viNh~~ 114 (545)
T KOG0471|consen 103 KIIADLVINHRS 114 (545)
T ss_pred EEEEeeccccCC
Confidence 999995 654
No 154
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.63 E-value=1.1e+02 Score=26.46 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=31.4
Q ss_pred CCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 008330 203 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLN 252 (570)
Q Consensus 203 ~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~ 252 (570)
.+|.++++.....+. + ..+.+.++.+|+.+|+..|+++|..
T Consensus 50 ~~pd~V~iS~~~~~~--------~-~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 50 ERPDVVGISVSMTPN--------L-PEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp TTCSEEEEEESSSTH--------H-HHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred CCCcEEEEEccCcCc--------H-HHHHHHHHHHHhcCCCCEEEEECCc
Confidence 378899998874442 2 2345777889999999999999975
No 155
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=42.41 E-value=4.1e+02 Score=28.11 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.+.+.++|+.+.+.|+. |-+|+-..-|+ .+.+.|.+.++.+.+. + -+.+..+.+.=||.
T Consensus 135 ~~~~~~ai~~l~~~G~~~v~~dli~GlPg----------------qt~~~~~~~l~~~~~l-~-~~~is~y~l~~~~g 194 (360)
T TIGR00539 135 AKNIAPAIETALKSGIENISLDLMYGLPL----------------QTLNSLKEELKLAKEL-P-INHLSAYALSVEPN 194 (360)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccCCCCC----------------CCHHHHHHHHHHHHcc-C-CCEEEeecceEcCC
Confidence 46677889999999995 66886543222 3567787777766542 2 23454566665664
No 156
>PRK05660 HemN family oxidoreductase; Provisional
Probab=42.32 E-value=4e+02 Score=28.53 Aligned_cols=59 Identities=10% Similarity=-0.043 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcCCCEE-EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 141 IKAFQAVVASLGNNNVMV-ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~V-ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
.+...++|+.+.+.|+.. -+|+-..-|+ .+.+.|.+..+.+.+.= -+.+-.|.|.=||.
T Consensus 142 ~~~~~~ai~~~~~~G~~~v~~dli~Glpg----------------qt~~~~~~~l~~~~~l~--p~~is~y~l~~~~g 201 (378)
T PRK05660 142 PDEAKRAAKLAQGLGLRSFNLDLMHGLPD----------------QSLEEALDDLRQAIALN--PPHLSWYQLTIEPN 201 (378)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCC----------------CCHHHHHHHHHHHHhcC--CCeEEeeccEeccC
Confidence 455677899999999965 4776442221 35677877777666522 23455566665664
No 157
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=42.28 E-value=2.2e+02 Score=28.24 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHcCCcEEEecccccccccCccc-cchhhhhhhhccchhhccCcccCCCCCCC----chHHHHHHHHHH
Q 008330 75 KQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLA-SLTVRQSFQKLGLLEAIGGIQSNNPSIVD----LPLIKAFQAVVA 149 (570)
Q Consensus 75 ~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~-n~tv~~s~~~lg~~~~~~g~~~~nP~~~~----~t~l~~ld~vV~ 149 (570)
..++++.++.++++||..|=++-.. .+..+ +. -..+.+.+...|+.-..-+....++.-.+ ...++.+..+++
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~~~-~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSPGD-LFPAD-YKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIE 91 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCCcc-cCCch-hhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHH
Confidence 3567889999999999988886521 11110 00 01233344444543221111111111111 234788888999
Q ss_pred HHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCC--CCCCCChhHHH
Q 008330 150 SLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNEL--RGPKQNVKDWY 227 (570)
Q Consensus 150 ~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP--~~~~~~~~~W~ 227 (570)
.|.+.|..+|+-.....+. .... . ......+.|.+.+..++..-+.. ++.|.+|| +... +.
T Consensus 92 ~a~~lg~~~vv~~~g~~~~----~~~~-~---~~~~~~~~~~~~l~~l~~~a~~~----~i~l~~e~~~~~~~-----~~ 154 (274)
T COG1082 92 LAKELGAKVVVVHPGLGAG----ADDP-D---SPEEARERWAEALEELAEIAEEL----GIGLALENHHHPGN-----VV 154 (274)
T ss_pred HHHHcCCCeEEeecccCCc----CCCC-C---CCcccHHHHHHHHHHHHHHHHHh----CCceEEeecCCccc-----ee
Confidence 9999998877754433211 0000 0 11123366777777776665555 23333443 3221 11
Q ss_pred HHHHHHHHHHHhcCCC-cEEEEeCC
Q 008330 228 RYMQLGAEAVHAANPE-VLVILSGL 251 (570)
Q Consensus 228 ~~~~~~~~aIr~~dp~-~lIiVeG~ 251 (570)
....+.++.|+.++.. .-+.++..
T Consensus 155 ~~~~~~~~~~~~~~~~~v~~~lD~~ 179 (274)
T COG1082 155 ETGADALDLLREVDSPNVGLLLDTG 179 (274)
T ss_pred ecCHHHHHHHHhcCCCceEEEEecC
Confidence 1113345667676544 44555543
No 158
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=42.21 E-value=2.3e+02 Score=28.54 Aligned_cols=180 Identities=9% Similarity=-0.000 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHcCCcEEEeccccccc--ccCcccc---chhhhhhhhccchhhc--cCc------ccCCCCCCCchHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLYLA--TNDSLAS---LTVRQSFQKLGLLEAI--GGI------QSNNPSIVDLPLIK 142 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~~~--~~~~~~n---~tv~~s~~~lg~~~~~--~g~------~~~nP~~~~~t~l~ 142 (570)
-++.+.++.+++.||..|=|++..... ....+.. ..+.+.++..|+.-.. .+. ...+|.. -...++
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~-r~~~~~ 94 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAV-RQQGLE 94 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHH-HHHHHH
Confidence 468899999999999999887654211 0000111 1123345555553210 000 0011111 124677
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCC
Q 008330 143 AFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQN 222 (570)
Q Consensus 143 ~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~ 222 (570)
.+.++++.|.+.|..+|+ ++..... .+ .+.....+.+++.|+.+++.-+.+--++++|..+.|... +
T Consensus 95 ~~~~~i~~a~~lG~~~v~-~~~~~~~------~~----~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~--t 161 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQ-LAGYDVY------YE----EHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMS--S 161 (279)
T ss_pred HHHHHHHHHHHhCCCEEE-ecCcccc------cC----cCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhc--C
Confidence 899999999999999885 3321100 00 000112456778889999988887778999977654332 2
Q ss_pred hhHHHHHHHHHHHHHHhcC-CCcEEEEeCCC---CCCcchhhhhcccCcCCCCCEEEEEeecCC
Q 008330 223 VKDWYRYMQLGAEAVHAAN-PEVLVILSGLN---FDKDLSFVRNQAVNLTFTGKLVFEAHWYGF 282 (570)
Q Consensus 223 ~~~W~~~~~~~~~aIr~~d-p~~lIiVeG~~---w~~dl~~~~~~p~~l~~~~nlVys~H~Y~~ 282 (570)
.. ++.+.|..++ |+.-+.++-.+ ++.+.... +. .....|..+|.-..
T Consensus 162 ~~-------~~~~li~~v~~~~v~~~~D~~h~~~~~~~~~~~----i~--~~~~~i~~vHikD~ 212 (279)
T TIGR00542 162 IS-------KWLKWDHYLNSPWFTLYPDIGNLSAWDNDVQME----LQ--LGIDKIVAIHLKDT 212 (279)
T ss_pred HH-------HHHHHHHHcCCCceEEEeCcChhhhccCCHHHH----HH--HhhhhEEEEEeCCC
Confidence 33 3344556666 44444444322 22222110 11 11345778888653
No 159
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=41.93 E-value=67 Score=35.17 Aligned_cols=71 Identities=10% Similarity=0.156 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccchhhccCcccCCCCCCC---chHHHHHHHHHHHH-
Q 008330 77 PMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVD---LPLIKAFQAVVASL- 151 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~---~t~l~~ld~vV~~a- 151 (570)
..++.++.++++|+|.|=+ |+...-..+-.| .+.+- ...||.+.. ...++.+.++|..+
T Consensus 23 ~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~Y---SI~Dq-------------l~~~~~~~~~~~~~~~~~v~~~v~~~~ 86 (423)
T PF14701_consen 23 DWEKHLKVISEKGYNMIHFTPLQERGESNSPY---SIYDQ-------------LKFDPDFFPPGKESTFEDVKEFVKEAE 86 (423)
T ss_pred HHHHHHHHHHHcCCcEEEecccccCCCCCCCc---cccch-------------hhcChhhcCCCccccHHHHHHHHHHHH
Confidence 4688999999999999998 443221111111 12111 234555432 23466778888777
Q ss_pred hcCCCEEEEecC
Q 008330 152 GNNNVMVILDNH 163 (570)
Q Consensus 152 ~~~Gl~VILD~H 163 (570)
.++||.+|.|++
T Consensus 87 ~~~~ll~~~DvV 98 (423)
T PF14701_consen 87 KKYGLLSMTDVV 98 (423)
T ss_pred HHcCceEEEEEe
Confidence 589999999965
No 160
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=41.25 E-value=76 Score=28.10 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=36.4
Q ss_pred cceEEeeccCCccceeccccCCCCCceeEeeccccEEEEe-cCCCceEEEeec
Q 008330 456 AYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSK-ADNGTTVCLDVD 507 (570)
Q Consensus 456 ~~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~~~~~~~~~-~~~~~~~cld~~ 507 (570)
++++|+...+|.-.-. .+-.++.+.|++.+.+...|..+ ...+.+||+|-+
T Consensus 9 ~~~~L~i~~~g~V~gt-~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~ 60 (122)
T PF00167_consen 9 TGYFLQINPNGTVDGT-GDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKC 60 (122)
T ss_dssp TSEEEEEETTSBEEEE-SSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTT
T ss_pred CCeEEEECCCCeEeCC-CCcCcceeEEEEEeccceEEEEEEecceEEEEECCC
Confidence 3778888777753333 23357789999988877667777 556789999964
No 161
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=40.56 E-value=99 Score=29.49 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHh
Q 008330 73 LSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLG 152 (570)
Q Consensus 73 l~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~ 152 (570)
.+.++++++++.|+++|+..| +.+-. + ..|..++ +..+-+.++
T Consensus 55 d~~RdL~~DL~~Lk~~G~~~V-vtl~~----~---------~EL~~l~-----------------------Vp~L~~~~~ 97 (168)
T PF05706_consen 55 DWRRDLQADLERLKDWGAQDV-VTLLT----D---------HELARLG-----------------------VPDLGEAAQ 97 (168)
T ss_dssp TEEB-HHHHHHHHHHTT--EE-EE-S-----H---------HHHHHTT------------------------TTHHHHHH
T ss_pred cccchHHHHHHHHHHCCCCEE-EEeCc----H---------HHHHHcC-----------------------CccHHHHHH
Confidence 345789999999999999998 43322 1 1222222 223457788
Q ss_pred cCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEE
Q 008330 153 NNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVV 208 (570)
Q Consensus 153 ~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vi 208 (570)
++||.++ |..-+ |+. .-+.+.+.+++..|++..++...|+
T Consensus 98 ~~Gi~~~---h~PI~-------D~~------aPd~~~~~~i~~eL~~~L~~g~~V~ 137 (168)
T PF05706_consen 98 ARGIAWH---HLPIP-------DGS------APDFAAAWQILEELAARLENGRKVL 137 (168)
T ss_dssp HTT-EEE---E-----------TTS---------HHHHHHHHHHHHHHHHTT--EE
T ss_pred HcCCEEE---ecCcc-------CCC------CCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 9998775 54322 211 0123445567788888888776766
No 162
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=40.46 E-value=1.9e+02 Score=29.61 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
.+++++...+.|+..||+-++.. -++.+...|+.++++|+.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~---------------------------------------~~~~~~~~i~~ak~~G~~ 133 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALN---------------------------------------DVRNLEVAIKAVKKAGKH 133 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCC---------------------------------------hHHHHHHHHHHHHHCCCe
Confidence 56788888899999999944321 246688999999999999
Q ss_pred EEEecC
Q 008330 158 VILDNH 163 (570)
Q Consensus 158 VILD~H 163 (570)
|.+.+.
T Consensus 134 v~~~i~ 139 (275)
T cd07937 134 VEGAIC 139 (275)
T ss_pred EEEEEE
Confidence 987654
No 163
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.27 E-value=4.1e+02 Score=28.70 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
.+.+.++++.+.+.|+. |-+|+=..-|+ .+.+.|.+.++.+.+- +-..|-.+.|.-||.-
T Consensus 150 ~~~~~~ai~~l~~~G~~~v~~dlI~GlPg----------------qt~e~~~~tl~~~~~l--~p~~is~y~L~~~pgT 210 (400)
T PRK07379 150 VKDIFAAVDLIHQAGIENFSLDLISGLPH----------------QTLEDWQASLEAAIAL--NPTHLSCYDLVLEPGT 210 (400)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCC----------------CCHHHHHHHHHHHHcC--CCCEEEEecceecCCc
Confidence 34567788899999998 66786432221 3567777777666542 2345667788888864
No 164
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=39.47 E-value=1.1e+02 Score=36.53 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEe
Q 008330 140 LIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGN-GFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMS 211 (570)
Q Consensus 140 ~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgn-g~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~d 211 (570)
-++.|.++|+.+.++||+||--+---.|++-. .+. |.++-+ .....++...|.+.=+.+|+++.||
T Consensus 806 ~~~~l~~~i~~~~~~~~~~ig~~~p~~p~y~~---t~~fg~~g~~---rs~a~~~~~~~~~~~~~y~~f~~~d 872 (912)
T TIGR02171 806 NMNSLKAFIDETAKKGVKVIGTIFPQSPGYKN---TGSFGRYGPR---RSIAKKIIDSFKKMEKTYPHFILFD 872 (912)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCCCCccc---cCcccccCcc---hhhHHHHHHHHHHHHhhCCceEEEe
Confidence 47889999999999999999655433344311 111 223322 2334445555555556677766444
No 165
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=38.60 E-value=4.9e+02 Score=27.37 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHcCCcEEEeccccc---ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLY---LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~---~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.++++++.|+..++|++=+-+... .+.-..|+..+..++.. . .....-.++ --+-+.++|++|++
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~--------~-~~~~~~~~Y---T~~di~elv~yA~~ 86 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGST--------E-VGGGPGGYY---TQEDYKDIVAYAAE 86 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCccccccccccc--------c-cCCCCCCcC---CHHHHHHHHHHHHH
Confidence 467889999999999998866431 11111122221111000 0 000001111 24569999999999
Q ss_pred CCCEEEEecCCC---------CCCccccCCCCC-----CCCCCC--CCCHH---HHHHHHHHHHHHhCCCCcEEEEeccC
Q 008330 154 NNVMVILDNHIS---------KPGWCCSNSDGN-----GFFGDQ--YFNPD---LWIKGLTKMATIFNGVRNVVGMSLRN 214 (570)
Q Consensus 154 ~Gl~VILD~H~~---------~~~w~~~~~dgn-----g~~~d~--~~~~~---~~~~~w~~iA~ryk~~p~Vig~dL~N 214 (570)
+||.||..+-.. .|.-.|...... +...+. ..+++ -..++++.+++.|.+.-=.+|-|=.+
T Consensus 87 rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~~~iHiGgDE~~ 166 (329)
T cd06568 87 RHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPGPYIHIGGDEAH 166 (329)
T ss_pred cCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCCCeEEEecccCC
Confidence 999999765221 011112110000 000010 01122 22467788888887654456666332
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 008330 215 ELRGPKQNVKDWYRYMQLGAEAVHAANPE 243 (570)
Q Consensus 215 EP~~~~~~~~~W~~~~~~~~~aIr~~dp~ 243 (570)
.. ....+..+++++.+.+++.+..
T Consensus 167 ---~~--~~~~~~~f~~~~~~~v~~~Gk~ 190 (329)
T cd06568 167 ---ST--PHDDYAYFVNRVRAIVAKYGKT 190 (329)
T ss_pred ---CC--chHHHHHHHHHHHHHHHHCCCe
Confidence 22 3456777888888888888754
No 166
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=38.58 E-value=1.1e+02 Score=34.01 Aligned_cols=64 Identities=17% Similarity=0.421 Sum_probs=40.4
Q ss_pred CeEEeccccCCCCC--------CcchHHHHHHHHHHHHH---CC---CceEEeccCceeecccCccCCCceeeeecCCCC
Q 008330 317 PLFVSEFGADLRGN--------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 382 (570)
Q Consensus 317 Pv~iGEFG~~~~~~--------~~~~~~~~~~~~~~~~~---~g---igw~~W~~~G~y~~r~~~~~~~et~Gll~~dw~ 382 (570)
|++|+|-|+...+. +..+..|++..+..+.+ .| .|+++|++-..|-.. .+....|||+--|..
T Consensus 370 pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~---~Gy~~RfGl~~VD~~ 446 (469)
T PRK13511 370 KIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWS---NGYEKRYGLFYVDFE 446 (469)
T ss_pred CEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchh---cCccCccceEEECCC
Confidence 79999999863321 22355677766655543 56 479999986544332 235677998765544
Q ss_pred C
Q 008330 383 D 383 (570)
Q Consensus 383 ~ 383 (570)
+
T Consensus 447 ~ 447 (469)
T PRK13511 447 T 447 (469)
T ss_pred c
Confidence 3
No 167
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.53 E-value=3.8e+02 Score=26.80 Aligned_cols=127 Identities=8% Similarity=0.039 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHcCCcEEEecccccc--cccCcccc---chhhhhhhhccchhhcc--Ccc-cCCCCCCC----chHHHHH
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYL--ATNDSLAS---LTVRQSFQKLGLLEAIG--GIQ-SNNPSIVD----LPLIKAF 144 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~--~~~~~~~n---~tv~~s~~~lg~~~~~~--g~~-~~nP~~~~----~t~l~~l 144 (570)
++++.++.++++||..|=|.+.... .....+.. ..+++.++..|+.-... +.. ..+..-.+ ...++.+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~ 96 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIM 96 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653210 00000111 12334556666643211 100 01111111 2467889
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCC
Q 008330 145 QAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGD-QYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNE 215 (570)
Q Consensus 145 d~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d-~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NE 215 (570)
+++|+.|.+.|..+|. ++.... ++.. .....+.+++.++.+++..+.+--.+++|..+.
T Consensus 97 ~~~i~~a~~lG~~~v~-~~~~~~-----------~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~ 156 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQ-LAGYDV-----------YYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDT 156 (284)
T ss_pred HHHHHHHHHhCCCEEE-ECCccc-----------ccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCc
Confidence 9999999999999986 232110 0000 001235667888888888877766678887643
No 168
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=38.20 E-value=99 Score=34.35 Aligned_cols=67 Identities=16% Similarity=0.364 Sum_probs=41.9
Q ss_pred cCC--CeEEeccccCCCCC-------CcchHHHHHHHHHHHHH---CC---CceEEeccCceeecccCccCCCceeeeec
Q 008330 314 QGW--PLFVSEFGADLRGN-------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFD 378 (570)
Q Consensus 314 ~g~--Pv~iGEFG~~~~~~-------~~~~~~~~~~~~~~~~~---~g---igw~~W~~~G~y~~r~~~~~~~et~Gll~ 378 (570)
.+. |++|+|-|....+. +..+..|++..+..+.+ .| .|+++|++-..|-.. .+....|||+-
T Consensus 364 Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~---~Gy~~RfGLv~ 440 (467)
T TIGR01233 364 YPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWS---NGYEKRYGLFY 440 (467)
T ss_pred cCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEE
Confidence 444 69999999974321 22355677776666544 45 479999986444322 34567799975
Q ss_pred CCCCC
Q 008330 379 WNWCD 383 (570)
Q Consensus 379 ~dw~~ 383 (570)
=|..+
T Consensus 441 VD~~t 445 (467)
T TIGR01233 441 VDFDT 445 (467)
T ss_pred ECCCC
Confidence 55443
No 169
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=37.92 E-value=5.1e+02 Score=27.62 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE-
Q 008330 79 DMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM- 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~- 157 (570)
++.++.+++.|+|-|-|.+ +.+.++ -++.+| - ....+.+.++|+.+.+.|+.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~---------~L~~l~------------R----~~~~~~~~~ai~~~~~~g~~~ 155 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDP---------LLKLLG------------R----THSSSKAIDAVQECSEHGFSN 155 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHH---------HHHHcC------------C----CCCHHHHHHHHHHHHHcCCCe
Confidence 5678889999988555544 322221 111111 0 01234566788899999995
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCC
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~ 217 (570)
|-+|+=..-|+ .+.+.|.+.++.+.+ ++ -+.|-.|.|.=||.
T Consensus 156 v~~Dli~GlPg----------------qt~~~~~~~l~~~~~-l~-~~~is~y~l~~~~g 197 (370)
T PRK06294 156 LSIDLIYGLPT----------------QSLSDFIVDLHQAIT-LP-ITHISLYNLTIDPH 197 (370)
T ss_pred EEEEeecCCCC----------------CCHHHHHHHHHHHHc-cC-CCeEEEeeeEecCC
Confidence 77885332221 356777777776654 22 33466688887875
No 170
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.74 E-value=27 Score=37.47 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=65.6
Q ss_pred ceeeCCCCceeeeecCC--CCceecCCCCCC---CCccccCCcceeecccceEEeeccCCccceeccccC-CC-CCceeE
Q 008330 412 KVIYHPATGLCVQRKSF--LDPLTLGPCTES---EAWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICT-DC-GSTWEI 484 (570)
Q Consensus 412 ~~~~~~~tg~c~~~~~~--~~~~~~~~c~~~---~~W~~~~~~~~~~~~~~~cl~a~~~g~~~~~~~~c~-~~-~~~W~~ 484 (570)
-.+..++|+.|++..+. ...+.++.|-+. +-...+.+++| ..+..||+|.|.+ +++ +.|. +. +..|+-
T Consensus 482 GE~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~agQl--~qge~CltAdg~~--i~~-~hC~lgtv~g~WqY 556 (603)
T KOG3737|consen 482 GEIRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAGQL--MQGEQCLTADGSK--IMI-THCNLGTVKGEWQY 556 (603)
T ss_pred hhccCcccchhHHhcCCCCCCccccccccCCCCceEEEeccccch--hccceeeecCCce--EEE-EEeecccccCceeh
Confidence 56788999999999554 244789999763 55555555554 4678899987653 344 7788 44 468998
Q ss_pred eeccccEEEEecCCCceEEEeecCCCceee-cce
Q 008330 485 ISDSKMHLSSKADNGTTVCLDVDSSNTIVT-NTC 517 (570)
Q Consensus 485 ~s~~~~~~~~~~~~~~~~cld~~~~~~~~~-~~c 517 (570)
.-+.+- + ...-+..|||+.....-|+ ..|
T Consensus 557 ~~~tk~-~---~H~~~~kC~~~se~~~qv~l~~C 586 (603)
T KOG3737|consen 557 FKNTKR-F---THIPSGKCLDRSEVLHQVFLSNC 586 (603)
T ss_pred hhcchh-e---eeccccccccccchhheeeeccc
Confidence 766653 1 2234789999987665555 444
No 171
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=37.70 E-value=93 Score=29.26 Aligned_cols=112 Identities=9% Similarity=0.048 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++..++..+.+|...|+++....-.. ......+.+ ....+.++++++.|.++|+.
T Consensus 73 ~~~~i~~a~~lg~~~i~~~~g~~~~~----~~~~~~~~~---------------------~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 73 LKKAIDLAKRLGAKYIVVHSGRYPSG----PEDDTEENW---------------------ERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp HHHHHHHHHHHTBSEEEEECTTESSS----TTSSHHHHH---------------------HHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHhCCCceeecCcccccc----cCCCHHHHH---------------------HHHHHHHHHHHhhhhhhcce
Confidence 46678888899999999976521000 011111111 23677899999999999999
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHH
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAE 235 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~ 235 (570)
+.|-+|..... ....+.+++ ..+.+++....--+.+|+-|-... ..++..++++..+
T Consensus 128 i~lE~~~~~~~-------------~~~~~~~~~----~~~l~~~~~~~~~i~~D~~h~~~~----~~~~~~~i~~~~~ 184 (213)
T PF01261_consen 128 IALENHPGPFS-------------ETPFSVEEI----YRLLEEVDSPNVGICFDTGHLIMA----GEDPDEAIKRLAP 184 (213)
T ss_dssp EEEE-SSSSSS-------------SEESSHHHH----HHHHHHHTTTTEEEEEEHHHHHHT----THHHHHHHHHHHH
T ss_pred EEEecccCccc-------------cchhhHHHH----HHHHhhcCCCcceEEEehHHHHHc----CCCHHHHHHHhhc
Confidence 99998864311 011222333 344455543323355888777654 2345444444444
No 172
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=37.47 E-value=56 Score=34.26 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHcCCcEEEeccccc-cc--ccCccccchhhhhhhhccchhhccCcccCCC--CCCCchHHHHHHHHHHHH
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLY-LA--TNDSLASLTVRQSFQKLGLLEAIGGIQSNNP--SIVDLPLIKAFQAVVASL 151 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~-~~--~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP--~~~~~t~l~~ld~vV~~a 151 (570)
.+.++++.|+..++|++=+-+... .+ .-..++..+. .|-+...- ..+ --+-++++|++|
T Consensus 19 ~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~-------------~ga~~~~~~~~~y---T~~di~~lv~yA 82 (351)
T PF00728_consen 19 TIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTE-------------KGAYRPSDAGGYY---TKEDIRELVAYA 82 (351)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHH-------------TTTESTTCTESEB---EHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccc-------------cCccccccccccC---CHHHHHHHHHHH
Confidence 367889999999999999877532 11 0001111110 01000000 011 235699999999
Q ss_pred hcCCCEEEEecCCCC--CCcc-------cc--CCCC-----CCCCCC--C--CCCH---HHHHHHHHHHHHHhCCCCcEE
Q 008330 152 GNNNVMVILDNHISK--PGWC-------CS--NSDG-----NGFFGD--Q--YFNP---DLWIKGLTKMATIFNGVRNVV 208 (570)
Q Consensus 152 ~~~Gl~VILD~H~~~--~~w~-------~~--~~dg-----ng~~~d--~--~~~~---~~~~~~w~~iA~ryk~~p~Vi 208 (570)
+++||.||..+-... ..|. +. ..+. ..+..+ . ..++ +-..++++++++.|...-=.+
T Consensus 83 ~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~~~iHi 162 (351)
T PF00728_consen 83 KERGIEVIPEIDTPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPSKYIHI 162 (351)
T ss_dssp HHTT-EEEEEEEESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHcCCceeeeccCchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCCCeEEe
Confidence 999999996542210 0010 00 0000 001000 0 0112 223567888888888555567
Q ss_pred EEeccCC-CCCCC------------CChh-HHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 209 GMSLRNE-LRGPK------------QNVK-DWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 209 g~dL~NE-P~~~~------------~~~~-~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
|.|=.|- -.... .+.. .+..+++++.+.+++.+.+ +++-+.
T Consensus 163 GgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~W~D 217 (351)
T PF00728_consen 163 GGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PIIWND 217 (351)
T ss_dssp E-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEEEST
T ss_pred CCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEEEcc
Confidence 8775541 10000 0111 2234567888888888877 444443
No 173
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=37.44 E-value=2e+02 Score=33.14 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=25.9
Q ss_pred EEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEe
Q 008330 53 RVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRL 95 (570)
Q Consensus 53 ~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRl 95 (570)
...+||.|..|... ....-++..++..++.|+.++|+
T Consensus 79 qmL~Rg~N~vGy~~------~~d~vv~~~v~~a~~~Gidv~Ri 115 (596)
T PRK14042 79 SMLLRGQNLLGYRN------YADDVVRAFVKLAVNNGVDVFRV 115 (596)
T ss_pred EEEecccccccccc------CChHHHHHHHHHHHHcCCCEEEE
Confidence 45688999776531 01112567788889999999999
No 174
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.10 E-value=3.1e+02 Score=28.66 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHcCCcEEEeccccc-cc--ccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHh
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLY-LA--TNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLG 152 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~-~~--~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~ 152 (570)
..++++++.|+..++|++-+-+..+ .+ +-..|+..+ +. | ..+ .++ --+-+..+|++|+
T Consensus 18 ~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt-----------~~--g--~~~-~~y---T~~di~elv~yA~ 78 (311)
T cd06570 18 AVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQ-----------QK--A--SDG-LYY---TQEQIREVVAYAR 78 (311)
T ss_pred HHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCcccc-----------cc--C--CCC-Ccc---CHHHHHHHHHHHH
Confidence 3467889999999999998866421 11 111121111 00 0 001 111 1356899999999
Q ss_pred cCCCEEEEecC
Q 008330 153 NNNVMVILDNH 163 (570)
Q Consensus 153 ~~Gl~VILD~H 163 (570)
++||.||..+-
T Consensus 79 ~rgI~vIPEId 89 (311)
T cd06570 79 DRGIRVVPEID 89 (311)
T ss_pred HcCCEEEEeec
Confidence 99999997653
No 175
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=36.95 E-value=88 Score=27.65 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=30.9
Q ss_pred CCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 008330 203 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLN 252 (570)
Q Consensus 203 ~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~ 252 (570)
..|.++||..+..- +. .+.+.++.||+..|+.+|+++|..
T Consensus 38 ~~pdiv~~S~~~~~---------~~-~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 38 LKPDVVGISLMTSA---------IY-EALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred cCCCEEEEeecccc---------HH-HHHHHHHHHHHHCCCCEEEECCcc
Confidence 68899999865321 22 456788999999999999999964
No 176
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=36.66 E-value=1.1e+02 Score=34.05 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=42.1
Q ss_pred cCCCeEEeccccCCCCC--------CcchHHHHHHHHHHHHH---CC---CceEEeccCceeecccCccC-CCceeeeec
Q 008330 314 QGWPLFVSEFGADLRGN--------NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIG-LNEYYGLFD 378 (570)
Q Consensus 314 ~g~Pv~iGEFG~~~~~~--------~~~~~~~~~~~~~~~~~---~g---igw~~W~~~G~y~~r~~~~~-~~et~Gll~ 378 (570)
.+.|++|+|-|+...+. +..+..|++.-+..+.+ .| .|+++|++-..|-.. .+ ....|||+-
T Consensus 364 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~---~G~y~~RfGLv~ 440 (474)
T PRK09852 364 YQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSAS---TGEMSKRYGFVY 440 (474)
T ss_pred cCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccccccc---CCCccceeeeEE
Confidence 66899999999874321 22345676666555443 45 479999986544322 23 356799986
Q ss_pred CCCCC
Q 008330 379 WNWCD 383 (570)
Q Consensus 379 ~dw~~ 383 (570)
=|..+
T Consensus 441 VD~~~ 445 (474)
T PRK09852 441 VDRDD 445 (474)
T ss_pred ECCCC
Confidence 55543
No 177
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=36.46 E-value=3.9e+02 Score=26.88 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHcCCcEEEeccccc-ccccCccccc---hhhhhhhhc-cchhhccCcccCCCCC----CCchHHHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRLTWPLY-LATNDSLASL---TVRQSFQKL-GLLEAIGGIQSNNPSI----VDLPLIKAFQA 146 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRlPi~~~-~~~~~~~~n~---tv~~s~~~l-g~~~~~~g~~~~nP~~----~~~t~l~~ld~ 146 (570)
.++++.++.++++||+.|=|.+... .+......+. .++..+... ++.-...+.+..|..- .-...++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~ 89 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKD 89 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHH
Confidence 4688999999999999998876431 1110000000 112222333 2221111111111111 12346788999
Q ss_pred HHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC-CCChhH
Q 008330 147 VVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP-KQNVKD 225 (570)
Q Consensus 147 vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~-~~~~~~ 225 (570)
+++.|.+.|...|+ +|.... .. .+.....+.+++.|++|++.-+.+.-.+++|-.+-+... ..+..
T Consensus 90 ~i~~A~~lG~~~v~-~~~g~~-------~~----~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~- 156 (279)
T cd00019 90 EIERCEELGIRLLV-FHPGSY-------LG----QSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFE- 156 (279)
T ss_pred HHHHHHHcCCCEEE-ECCCCC-------CC----CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHH-
Confidence 99999999999765 453210 00 001112355678888888887777667778765444211 11222
Q ss_pred HHHHHHHHHHHHHhcC--CCcEEEEeCCC
Q 008330 226 WYRYMQLGAEAVHAAN--PEVLVILSGLN 252 (570)
Q Consensus 226 W~~~~~~~~~aIr~~d--p~~lIiVeG~~ 252 (570)
++.+.|.+++ |+.=+.++-.+
T Consensus 157 ------~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 157 ------ELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred ------HHHHHHHhcCCCCCeEEEEEhhh
Confidence 3345566665 55556666544
No 178
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.33 E-value=74 Score=32.75 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHHhcCCCEEEEecCCC
Q 008330 137 DLPLIKAFQAVVASLGNNNVMVILDNHIS 165 (570)
Q Consensus 137 ~~t~l~~ld~vV~~a~~~Gl~VILD~H~~ 165 (570)
+...++.++++++.|+++.|+ ||+|..
T Consensus 132 ~Q~~v~~y~~i~~~AA~~~Lm--vnfHg~ 158 (273)
T PF10566_consen 132 DQEMVNWYEDILEDAAEYKLM--VNFHGA 158 (273)
T ss_dssp SHHHHHHHHHHHHHHHHTT-E--EEETTS
T ss_pred CHHHHHHHHHHHHHHHHcCcE--EEecCC
Confidence 346788999999999999875 577875
No 179
>PLN02814 beta-glucosidase
Probab=35.70 E-value=1e+02 Score=34.68 Aligned_cols=65 Identities=17% Similarity=0.499 Sum_probs=41.0
Q ss_pred CCeEEeccccCCCCC----CcchHHHHHHHHHHHHH---CC---CceEEeccCceeecccCccCCCceeeeecCCCCC
Q 008330 316 WPLFVSEFGADLRGN----NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWCD 383 (570)
Q Consensus 316 ~Pv~iGEFG~~~~~~----~~~~~~~~~~~~~~~~~---~g---igw~~W~~~G~y~~r~~~~~~~et~Gll~~dw~~ 383 (570)
.|++|+|-|+...+. +..+..|++.-+..+.+ .| .|+++|++-..|-.. .+....|||+-=|..+
T Consensus 388 ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~---~Gy~~RfGLvyVD~~~ 462 (504)
T PLN02814 388 PPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELL---GGYTTSFGMYYVNFSD 462 (504)
T ss_pred CCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEECCCC
Confidence 489999999864321 33456677766655443 45 479999985444322 3456779997655443
No 180
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=35.64 E-value=3.3e+02 Score=29.93 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~ 219 (570)
.+.+.++|+.+.+.|+. |-+|+-..-|+ .+.+.|.+.++.+.+. + -..|-.|.|.=+|...
T Consensus 186 ~~~~~~ai~~l~~~G~~~v~~dli~GlPg----------------qt~e~~~~tl~~~~~l-~-~~~is~y~L~~~p~~~ 247 (455)
T TIGR00538 186 EEMIFELMNHAREAGFTSINIDLIYGLPK----------------QTKESFAKTLEKVAEL-N-PDRLAVFNYAHVPWVK 247 (455)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeEEeeCCC----------------CCHHHHHHHHHHHHhc-C-CCEEEEecCccccchh
Confidence 45678889999999985 55775432221 3567887777766653 2 2234445552233210
Q ss_pred ----------CCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Q 008330 220 ----------KQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFD 254 (570)
Q Consensus 220 ----------~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~ 254 (570)
..+.+++.+.++.+.+...+.+ ..-++-.+|.
T Consensus 248 ~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~G---y~~~~~~~fa 289 (455)
T TIGR00538 248 PAQRKIPEAALPSAEEKLDILQETIAFLTEAG---YQFIGMDHFA 289 (455)
T ss_pred HHHhcccccCCCCHHHHHHHHHHHHHHHHHCC---CEEEecccee
Confidence 0134566666666666666554 2334444443
No 181
>PLN02998 beta-glucosidase
Probab=35.55 E-value=1.1e+02 Score=34.18 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=42.6
Q ss_pred cCC-CeEEeccccCCCC-C---CcchHHHHHHHHHHHHH---CC---CceEEeccCceeecccCccCCCceeeeecCCCC
Q 008330 314 QGW-PLFVSEFGADLRG-N---NVNDNRYLNCFFGVAAE---LD---WDWALWTLVGSYYLREGVIGLNEYYGLFDWNWC 382 (570)
Q Consensus 314 ~g~-Pv~iGEFG~~~~~-~---~~~~~~~~~~~~~~~~~---~g---igw~~W~~~G~y~~r~~~~~~~et~Gll~~dw~ 382 (570)
.+. |++|+|-|+...+ + +..+..|++.-+..+.+ .| +|+++|++-..|-.. .+....|||+-=|..
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~---~Gy~~RfGLv~VD~~ 466 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELF---GGYERSFGLLYVDFK 466 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEECCC
Confidence 445 7999999986542 1 33456677776665543 45 479999986444322 345677999865555
Q ss_pred C
Q 008330 383 D 383 (570)
Q Consensus 383 ~ 383 (570)
+
T Consensus 467 ~ 467 (497)
T PLN02998 467 D 467 (497)
T ss_pred C
Confidence 3
No 182
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=35.03 E-value=1.1e+02 Score=27.37 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=40.1
Q ss_pred ceEEeeccCCccceeccccCCCCCceeEeeccccEEEEe-cCCCceEEEeecC---CCceeecceeee
Q 008330 457 YFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSK-ADNGTTVCLDVDS---SNTIVTNTCKCL 520 (570)
Q Consensus 457 ~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~~~~~~~~~-~~~~~~~cld~~~---~~~~~~~~c~c~ 520 (570)
+.-|+.-.+|+ +.-..+-+++.+.|++.|.+...|+.+ ...+.+||.|.++ .....+..|...
T Consensus 8 ~~~L~I~~dG~-V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~s~~~~~dC~F~ 74 (123)
T cd00058 8 GFHLQILPDGT-VDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYGSKGFTEECLFR 74 (123)
T ss_pred CeEEEEcCCCc-EecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECCCCCEEECCCCCCCCEEE
Confidence 44455555554 222222335689999999887778877 5677899999764 233455666664
No 183
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=34.67 E-value=5.4e+02 Score=26.68 Aligned_cols=92 Identities=10% Similarity=0.098 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCC
Q 008330 142 KAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQ 221 (570)
Q Consensus 142 ~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~ 221 (570)
..+..-|..++++|.+|||-+= +|... . +.....+.+++++....+..+|.= ..| =||+-+-. . .
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~G----G~~g~-----~-~~~~~~~~~~~~~a~~~~i~~y~~-dgi-DfDiE~~~-~--~ 118 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSFG----GASGT-----P-LATSCTSADQLAAAYQKVIDAYGL-THL-DFDIEGGA-L--T 118 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEec----CCCCC-----c-cccCcccHHHHHHHHHHHHHHhCC-CeE-EEeccCCc-c--c
Confidence 3467778899999999999763 33211 1 222224578888888888888842 233 35555522 1 1
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 222 NVKDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 222 ~~~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
+...+.+.. ++++.+++..|+..|.+-
T Consensus 119 d~~~~~~~~-~al~~Lq~~~p~l~vs~T 145 (294)
T cd06543 119 DTAAIDRRA-QALALLQKEYPDLKISFT 145 (294)
T ss_pred cchhHHHHH-HHHHHHHHHCCCcEEEEe
Confidence 223344443 566888888898777764
No 184
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=34.46 E-value=1.4e+02 Score=33.33 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=40.4
Q ss_pred cCCCeEEeccccCCCCC--------CcchHHHHHHHHHHHH----HCCC---ceEEeccCceeecccCccC-CCceeeee
Q 008330 314 QGWPLFVSEFGADLRGN--------NVNDNRYLNCFFGVAA----ELDW---DWALWTLVGSYYLREGVIG-LNEYYGLF 377 (570)
Q Consensus 314 ~g~Pv~iGEFG~~~~~~--------~~~~~~~~~~~~~~~~----~~gi---gw~~W~~~G~y~~r~~~~~-~~et~Gll 377 (570)
.+.|++|+|-|+...+. +..+..|++.-+..+. +.|+ |+++|++-..|-.. .+ ....|||+
T Consensus 367 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~---~G~y~~RfGl~ 443 (478)
T PRK09593 367 YQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAG---TGEMKKRYGFI 443 (478)
T ss_pred cCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhccc---CCCccCeeceE
Confidence 56799999999864321 2224556665554443 2454 79999986554332 23 45679997
Q ss_pred cCCCC
Q 008330 378 DWNWC 382 (570)
Q Consensus 378 ~~dw~ 382 (570)
-=|..
T Consensus 444 ~VD~~ 448 (478)
T PRK09593 444 YVDRD 448 (478)
T ss_pred EECCC
Confidence 65544
No 185
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=33.58 E-value=1.7e+02 Score=31.58 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCcEEEeccccc----ccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhc
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLY----LATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGN 153 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~----~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~ 153 (570)
.++.++.+|++|+.-|=|.--.+ |+... +.+..+ ...-| --+.+.+++++|++
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~-~t~~n~----------------~~~~p------krDiv~el~~A~rk 139 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSK-YSNWNA----------------VDTGP------KRDLVGELADAVRK 139 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCC-CCCCcc----------------cCCCC------CcchHHHHHHHHHH
Confidence 57889999999999987754322 22110 100000 00111 23679999999999
Q ss_pred CCCEEEEecCCCCCCccccC-CC---CCCCCCCCCCCHHH----HHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhH
Q 008330 154 NNVMVILDNHISKPGWCCSN-SD---GNGFFGDQYFNPDL----WIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKD 225 (570)
Q Consensus 154 ~Gl~VILD~H~~~~~w~~~~-~d---gng~~~d~~~~~~~----~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~ 225 (570)
+||++-+ .|.. ..|.... .+ ...--.+. ....+ +..-++.|.++|.. .++-||.-.+-. ...
T Consensus 140 ~Glk~G~-Y~S~-~DW~~p~y~~~~~~~~~~~~~-~~~~~y~~~~~~Ql~ELit~Ygp--d~lWfD~~~~~~-----~~~ 209 (384)
T smart00812 140 RGLKFGL-YHSL-FDWFNPLYAGPTSSDEDPDNW-PRFQEFVDDWLPQLRELVTRYKP--DLLWFDGGWEAP-----DDY 209 (384)
T ss_pred cCCeEEE-EcCH-HHhCCCccccccccccccccc-hhHHHHHHHHHHHHHHHHhcCCC--ceEEEeCCCCCc-----cch
Confidence 9999988 4543 2332100 00 00000000 01122 35667778889976 567799754321 123
Q ss_pred HHHHHHHHHHHHHhcCCCc
Q 008330 226 WYRYMQLGAEAVHAANPEV 244 (570)
Q Consensus 226 W~~~~~~~~~aIr~~dp~~ 244 (570)
| ..+++++.||+..|+.
T Consensus 210 ~--~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 210 W--RSKEFLAWLYNLSPVK 226 (384)
T ss_pred h--cHHHHHHHHHHhCCCC
Confidence 4 2357788999999987
No 186
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=33.53 E-value=2.5e+02 Score=28.61 Aligned_cols=58 Identities=9% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCC---EEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEe
Q 008330 141 IKAFQAVVASLGNNNV---MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMS 211 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl---~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~d 211 (570)
++.+++.++.|.++|+ .+|||--. ++++......-+.++..+.+.++|.+.|-++|..
T Consensus 137 ~~~l~~~v~~a~~~GI~~~~IilDPgi-------------~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~S 197 (261)
T PRK07535 137 LAVAKELVEKADEYGIPPEDIYIDPLV-------------LPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLS 197 (261)
T ss_pred HHHHHHHHHHHHHcCCCHhHEEEeCCC-------------CcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 5667777888888888 67887222 2122111111233555666666666666665544
No 187
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=33.39 E-value=1.1e+02 Score=34.12 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=41.5
Q ss_pred cCCCeEEeccccCCCCC--------CcchHHHHHHHHHHHH----HCC---CceEEeccCceeecccCccC-CCceeeee
Q 008330 314 QGWPLFVSEFGADLRGN--------NVNDNRYLNCFFGVAA----ELD---WDWALWTLVGSYYLREGVIG-LNEYYGLF 377 (570)
Q Consensus 314 ~g~Pv~iGEFG~~~~~~--------~~~~~~~~~~~~~~~~----~~g---igw~~W~~~G~y~~r~~~~~-~~et~Gll 377 (570)
.+.|++|+|-|+...+. +..+..|++.-+..+. +.| .|+++|++-..|-.. .+ ....|||+
T Consensus 366 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~---~G~y~~RfGlv 442 (476)
T PRK09589 366 YQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAG---TGEMKKRYGFI 442 (476)
T ss_pred cCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccccccc---CCccccceeeE
Confidence 56899999999874321 2234566666555443 345 479999986444322 23 45689998
Q ss_pred cCCCCC
Q 008330 378 DWNWCD 383 (570)
Q Consensus 378 ~~dw~~ 383 (570)
-=|..+
T Consensus 443 ~VD~~~ 448 (476)
T PRK09589 443 YVDKDN 448 (476)
T ss_pred EEcCCC
Confidence 655543
No 188
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=33.31 E-value=2.4e+02 Score=30.25 Aligned_cols=128 Identities=14% Similarity=0.159 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+.++++.+++.|+..+|--. |.+.|-..+|+ +. .++.+..+-+.+.+.||.
T Consensus 134 ~~~~A~~lk~~g~~~~r~~~---------~kpRtsp~~f~-------------------g~-~~e~l~~L~~~~~~~Gl~ 184 (360)
T PRK12595 134 VEAVAKALKAKGLKLLRGGA---------FKPRTSPYDFQ-------------------GL-GVEGLKILKQVADEYGLA 184 (360)
T ss_pred HHHHHHHHHHcCCcEEEccc---------cCCCCCCcccc-------------------CC-CHHHHHHHHHHHHHcCCC
Confidence 56778889999999999311 22223222222 22 236677888889999999
Q ss_pred EEEecCCCCCC-ccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHH
Q 008330 158 VILDNHISKPG-WCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEA 236 (570)
Q Consensus 158 VILD~H~~~~~-w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~a 236 (570)
++-+.|....- ......|- -+-+. ++... ..+++.+|+. +.|-++ . ++...+.++|. .+++.
T Consensus 185 ~~t~v~d~~~~~~l~~~vd~-lkI~s--~~~~n-~~LL~~~a~~--gkPVil--k-----~G~~~t~~e~~----~Ave~ 247 (360)
T PRK12595 185 VISEIVNPADVEVALDYVDV-IQIGA--RNMQN-FELLKAAGRV--NKPVLL--K-----RGLSATIEEFI----YAAEY 247 (360)
T ss_pred EEEeeCCHHHHHHHHHhCCe-EEECc--ccccC-HHHHHHHHcc--CCcEEE--e-----CCCCCCHHHHH----HHHHH
Confidence 99999875310 00000000 00000 00011 2455566642 333333 1 12112566775 45677
Q ss_pred HHhcCCCcEEEEe-CC
Q 008330 237 VHAANPEVLVILS-GL 251 (570)
Q Consensus 237 Ir~~dp~~lIiVe-G~ 251 (570)
|++.+...+++.+ |.
T Consensus 248 i~~~Gn~~i~L~erg~ 263 (360)
T PRK12595 248 IMSQGNGQIILCERGI 263 (360)
T ss_pred HHHCCCCCEEEECCcc
Confidence 7777776778886 64
No 189
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=33.03 E-value=1e+02 Score=28.04 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEecc
Q 008330 149 ASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLR 213 (570)
Q Consensus 149 ~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~ 213 (570)
+.+.+.|-.|||+++. .||.. =..+...+.+++++|++.-.++.+++-
T Consensus 14 ~~a~~~gk~vvV~F~A---~WC~~--------------C~~~~p~l~~l~~~~~~~~~~v~v~vd 61 (142)
T cd02950 14 EVALSNGKPTLVEFYA---DWCTV--------------CQEMAPDVAKLKQKYGDQVNFVMLNVD 61 (142)
T ss_pred HHHHhCCCEEEEEEEC---CcCHH--------------HHHhHHHHHHHHHHhccCeeEEEEEcC
Confidence 4455788899999986 47621 123455678899999887777777763
No 190
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.48 E-value=80 Score=33.88 Aligned_cols=27 Identities=15% Similarity=0.356 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHcCCcEEEeccccc
Q 008330 74 SKQPMDMLSKRVVDMGFNCVRLTWPLY 100 (570)
Q Consensus 74 ~~~~~~~~~~~i~~~GfN~VRlPi~~~ 100 (570)
+..+++++++.++++||+++|-.++..
T Consensus 332 s~p~~~~vv~~L~~~G~~asrTHf~p~ 358 (380)
T COG1867 332 SAPPLEEVVEALRSAGYEASRTHFSPT 358 (380)
T ss_pred CCCCHHHHHHHHHhcCceeeeeccCCc
Confidence 345578999999999999999877654
No 191
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.41 E-value=29 Score=37.36 Aligned_cols=69 Identities=22% Similarity=0.406 Sum_probs=50.0
Q ss_pred CCCceeeeecCC--CCceecCCCCCCC---CccccCCcceeecccceEEeeccCCccceeccccCCC--CCceeEee
Q 008330 417 PATGLCVQRKSF--LDPLTLGPCTESE---AWSYTPHKTISLKGAYFCLQAKHVGKPAKLGIICTDC--GSTWEIIS 486 (570)
Q Consensus 417 ~~tg~c~~~~~~--~~~~~~~~c~~~~---~W~~~~~~~~~~~~~~~cl~a~~~g~~~~~~~~c~~~--~~~W~~~s 486 (570)
...++|..+.++ ..++.+-.|..++ +|.-.+. .|.-.++.+||+....|.-......|.+. .|+|++..
T Consensus 480 ~~~elCL~v~~~~pg~~v~l~~C~~~e~~q~~v~~~~-~l~h~~s~KOGd~~~~g~~~l~~~~C~~~~~sQ~w~f~~ 555 (559)
T KOG3738|consen 480 THRELCLAVGSNTPGSPVALVPCGNNETKQRWVELGG-HLLHAGSHLCLDNPLKGRWLLEVSTCESHLVSQSWQFAL 555 (559)
T ss_pred HHHhhhheeecCCCCCeEEEEecCCCCCceEEEecCC-chhcccccceeccccCCCcceeecccccccccceeeeeh
Confidence 456789988553 3568899999873 5554443 44445789999998888876667889954 58999843
No 192
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=32.40 E-value=1.4e+02 Score=26.93 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=40.6
Q ss_pred eEEeeccCCccceeccccCCCCCceeEeeccccEEEEe-cCCCceEEEeecC---CCceeecceeee
Q 008330 458 FCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSK-ADNGTTVCLDVDS---SNTIVTNTCKCL 520 (570)
Q Consensus 458 ~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~~~~~~~~~-~~~~~~~cld~~~---~~~~~~~~c~c~ 520 (570)
.-|+.-.+|.. .-..+-.++.+.|++.|.+...|..+ ...+.+||.|.++ .....+..|...
T Consensus 13 ~~L~I~~~G~V-~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s~~~~~dC~F~ 78 (126)
T smart00442 13 QHLQILPDGTV-DGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGSKNFTEDCVFR 78 (126)
T ss_pred eEEEEcCCceE-ecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEcccCCCCcEEE
Confidence 44555555542 22223346689999999886667777 5667899999875 334456777775
No 193
>PRK00865 glutamate racemase; Provisional
Probab=31.99 E-value=1.8e+02 Score=29.49 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEE
Q 008330 191 IKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANPEVLVIL 248 (570)
Q Consensus 191 ~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiV 248 (570)
...++.|.+++.+..-++..|..|=|.|.+ +.++...++.++++.+.+.+.+.+|+-
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG~k-s~~~i~~~~~~~~~~L~~~g~d~iVIa 74 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYGEK-SEEEIRERTLEIVEFLLEYGVKMLVIA 74 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCC-CHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 457889999999999999999999999986 567888899999999999888876554
No 194
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=31.74 E-value=1.7e+02 Score=31.15 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
.+.+.++|+.+.+.|+. |-+|+-..-|+ .+.+.|.+.++.+.+. + -..|-.|.|.-||.-
T Consensus 134 ~~~~~~ai~~l~~~g~~~v~~dli~GlPg----------------qt~e~~~~~l~~~~~l-~-~~~is~y~l~~~pgT 194 (374)
T PRK05799 134 FEEFLENYKLARKLGFNNINVDLMFGLPN----------------QTLEDWKETLEKVVEL-N-PEHISCYSLIIEEGT 194 (374)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCC----------------CCHHHHHHHHHHHHhc-C-CCEEEEeccEecCCC
Confidence 45567888899999986 55776432221 3578888888777653 2 234556777767753
No 195
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=31.53 E-value=39 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred cccCCCCCCC-----cC---ccceeeCCCCceeeee
Q 008330 398 SPFRGPGVFE-----TG---LHKVIYHPATGLCVQR 425 (570)
Q Consensus 398 ~~~~~p~~~~-----~~---~~~~~~~~~tg~c~~~ 425 (570)
++++||.+++ .+ ..+.+|+|+||+.|.+
T Consensus 9 KvL~DP~SG~Yy~vd~P~Qp~~k~lfDPETGqYVeV 44 (75)
T PF15232_consen 9 KVLQDPESGQYYVVDAPVQPKTKTLFDPETGQYVEV 44 (75)
T ss_pred cEeecCCCCCEEEEecCCCcceeeeecCCCCcEEEE
Confidence 5677887773 22 2589999999999988
No 196
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=31.32 E-value=1.5e+02 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=25.9
Q ss_pred CCCCceeEe-eccccEEEEecCCCceEEEeecCCCceee
Q 008330 477 DCGSTWEII-SDSKMHLSSKADNGTTVCLDVDSSNTIVT 514 (570)
Q Consensus 477 ~~~~~W~~~-s~~~~~~~~~~~~~~~~cld~~~~~~~~~ 514 (570)
++.+.|++. .+.+..++.+..+|.|+++|- +|.|+.
T Consensus 22 ~~~e~f~le~~~~~~~v~lrs~~GkYls~~~--~G~v~~ 58 (111)
T PF06268_consen 22 SDWETFQLEFDDGSYKVALRSHNGKYLSVDS--DGSVVA 58 (111)
T ss_dssp SCGGSEEEEEETTEEEEEEECTTSEEEEEET--TSEEEE
T ss_pred cccEEEEEEEECCCCEEEEEcCCCCEEEEcC--CCeEEe
Confidence 345789997 455667778888999999865 666544
No 197
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=30.68 E-value=3.5e+02 Score=28.65 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
.+.+.++|+.+.+.|+. |-+|+=..-|+ .+.+.|.+.++.+.+ .+ -+.|..+.|.=||..
T Consensus 133 ~~~~~~ai~~lr~~g~~~v~iDli~GlPg----------------qt~~~~~~~l~~~~~-l~-~~~is~y~L~~~~gT 193 (350)
T PRK08446 133 QKQIIKAIENAKKAGFENISIDLIYDTPL----------------DNKKLLKEELKLAKE-LP-INHLSAYSLTIEENT 193 (350)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecCCCC----------------CCHHHHHHHHHHHHh-cC-CCEEEeccceecCCC
Confidence 45677889999999986 55776432221 456778777766554 22 234556677767754
No 198
>PRK12435 ferrochelatase; Provisional
Probab=30.43 E-value=6.5e+02 Score=26.31 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhcc--chh-hccCcccCCCCCCCchHHHHHHHHHHHH
Q 008330 76 QPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLG--LLE-AIGGIQSNNPSIVDLPLIKAFQAVVASL 151 (570)
Q Consensus 76 ~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg--~~~-~~~g~~~~nP~~~~~t~l~~ld~vV~~a 151 (570)
..+++.++.|++.|+.-|-+ |+..+ |+..|.....+.+. +.. ..+.+...++...+..+++++-..|..+
T Consensus 90 P~i~~~l~~l~~~g~~~iv~lpLyPq------yS~~Tt~s~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~a~~I~~~ 163 (311)
T PRK12435 90 PFIEDAVEQMHNDGIEEAISIVLAPH------YSTFSVKSYNKRAKEEAEKLGGPTITSIESWYDEPKFIQYWADQIKET 163 (311)
T ss_pred CCHHHHHHHHHHcCCCeEEEEECCCc------cccccHHHHHHHHHHHhcccCCCeEEEeCCccCChHHHHHHHHHHHHH
Confidence 45788999999999987765 55433 33333332221110 000 0011222333444566777776666544
Q ss_pred hc-------CCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChh
Q 008330 152 GN-------NNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVK 224 (570)
Q Consensus 152 ~~-------~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~ 224 (570)
.+ ...++|+..|..+-.. .+ -+|.| +++..+.-+.|+++..-..-.++|.-.=.+..
T Consensus 164 l~~~~~~~~~~~~llfSaHslP~~~----i~----~GDpY--~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~------ 227 (311)
T PRK12435 164 FAQIPEEEREKAVLIVSAHSLPEKI----IA----AGDPY--PDQLEETADLIAEQANVEHYAIGWQSEGNTPD------ 227 (311)
T ss_pred HHHcCcccccceEEEEecCCCchhH----hh----CCCCH--HHHHHHHHHHHHHHcCCCCCeEeeecCCCCCC------
Confidence 32 2368999999986221 00 12343 46666777778888754444567776411111
Q ss_pred HH-HHHHHHHHHHHHhc-CCCcEEEEe
Q 008330 225 DW-YRYMQLGAEAVHAA-NPEVLVILS 249 (570)
Q Consensus 225 ~W-~~~~~~~~~aIr~~-dp~~lIiVe 249 (570)
.| ..+..+.++.+.+. +-+.++++.
T Consensus 228 ~WL~P~t~d~l~~l~~~~G~k~v~vvp 254 (311)
T PRK12435 228 PWLGPDVQDLTRDLYEEHGYKSFIYTP 254 (311)
T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEC
Confidence 23 12333444555444 556666665
No 199
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=30.23 E-value=85 Score=28.71 Aligned_cols=36 Identities=28% Similarity=0.262 Sum_probs=25.0
Q ss_pred EEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEeccc
Q 008330 54 VKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWP 98 (570)
Q Consensus 54 v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~ 98 (570)
..|||||..|+. .-++++.-+.+.+.||.-||--+.
T Consensus 6 aLLRGINVGG~n---------ki~MaeLr~~l~~~Gf~~V~Tyi~ 41 (137)
T PF08002_consen 6 ALLRGINVGGKN---------KIKMAELREALEDLGFTNVRTYIQ 41 (137)
T ss_dssp EEESS-SBTTBS------------HHHHHHHHHHCT-EEEEEETT
T ss_pred EEEcceecCCCC---------cccHHHHHHHHHHcCCCCceEEEe
Confidence 579999987653 345788888889999999997554
No 200
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.10 E-value=3.1e+02 Score=29.24 Aligned_cols=95 Identities=21% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE-
Q 008330 79 DMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM- 157 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~- 157 (570)
++.++.+++.|+|-|-|.+.. +.+ .+ ++.+| .....+.+.++++.+.+.|+.
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS--~~~------~~---L~~l~----------------R~~s~~~~~~a~~~l~~~g~~~ 160 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQS--AAP------HV---LAVLD----------------RTHTPGRAVAAAREARAAGFEH 160 (375)
T ss_pred HHHHHHHHHcCCCEEEEeccc--CCH------HH---HHHcC----------------CCCCHHHHHHHHHHHHHcCCCc
Confidence 577888888898866665532 221 11 11111 011245577888899999998
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
|.+|+=..-|+ .+.+.|.+.++.+.+ ++ -..+..|.|.=||..
T Consensus 161 v~~dli~GlPg----------------qt~~~~~~tl~~~~~-l~-~~~i~~y~l~~~~gT 203 (375)
T PRK05628 161 VNLDLIYGTPG----------------ESDDDWRASLDAALE-AG-VDHVSAYALIVEDGT 203 (375)
T ss_pred EEEEEeccCCC----------------CCHHHHHHHHHHHHh-cC-CCEEEeeeeecCCCC
Confidence 87886432121 356777777666554 32 233545667666643
No 201
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.92 E-value=1.7e+02 Score=29.36 Aligned_cols=60 Identities=8% Similarity=0.000 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++..++..+.+|..+|++.-....... +-.+.+ ....+.++.+.+.|.++||.
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~~~~~------~~~~~~---------------------~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHAGYLT------PPNVIW---------------------GRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCC------CHHHHH---------------------HHHHHHHHHHHHHHHHcCCE
Confidence 345667778999999999543211100 000110 24567899999999999999
Q ss_pred EEEecCC
Q 008330 158 VILDNHI 164 (570)
Q Consensus 158 VILD~H~ 164 (570)
+.+-+|.
T Consensus 145 l~iE~~~ 151 (275)
T PRK09856 145 LILEPLT 151 (275)
T ss_pred EEEecCC
Confidence 9999885
No 202
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=29.68 E-value=1.6e+02 Score=32.75 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=40.4
Q ss_pred cCCCeEEeccccCCCCC--------CcchHHHHHHHHHHHH----HCCC---ceEEeccCceeecccCccC-CCceeeee
Q 008330 314 QGWPLFVSEFGADLRGN--------NVNDNRYLNCFFGVAA----ELDW---DWALWTLVGSYYLREGVIG-LNEYYGLF 377 (570)
Q Consensus 314 ~g~Pv~iGEFG~~~~~~--------~~~~~~~~~~~~~~~~----~~gi---gw~~W~~~G~y~~r~~~~~-~~et~Gll 377 (570)
.+.||+|+|-|+...+. +..+..|++.-+..+. +.|+ |+++|++-..|-.. .+ ....|||+
T Consensus 367 Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~---~G~y~~RfGl~ 443 (477)
T PRK15014 367 YQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFT---TGQYSKRYGFI 443 (477)
T ss_pred cCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhccc---CCCccCccceE
Confidence 56799999999874321 2234566666555443 2553 79999975443222 23 45679997
Q ss_pred cCCCC
Q 008330 378 DWNWC 382 (570)
Q Consensus 378 ~~dw~ 382 (570)
-=|..
T Consensus 444 ~VD~~ 448 (477)
T PRK15014 444 YVNKH 448 (477)
T ss_pred EECCC
Confidence 55544
No 203
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=29.29 E-value=5.9e+02 Score=27.99 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCC-CEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC
Q 008330 142 KAFQAVVASLGNNN-VMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK 220 (570)
Q Consensus 142 ~~ld~vV~~a~~~G-l~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~ 220 (570)
+.+.+.|+.+.+.| ..|.+|+=---|+ .+.+.|.+.++.+.+ ++ -..|-.|.|.-||..+.
T Consensus 199 ~~~~~~i~~l~~~g~~~v~~DlI~GlPg----------------qT~e~~~~~l~~~~~-l~-~~~is~y~L~~~pgT~l 260 (449)
T PRK09058 199 EEVLARLEELVARDRAAVVCDLIFGLPG----------------QTPEIWQQDLAIVRD-LG-LDGVDLYALNLLPGTPL 260 (449)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEEeeCCC----------------CCHHHHHHHHHHHHh-cC-CCEEEEeccccCCCCHH
Confidence 45677888889999 6788887432221 456778777766655 22 23466788888885421
Q ss_pred -----------C-ChhHHHHHHHHHHHHHHhcCCC
Q 008330 221 -----------Q-NVKDWYRYMQLGAEAVHAANPE 243 (570)
Q Consensus 221 -----------~-~~~~W~~~~~~~~~aIr~~dp~ 243 (570)
. +.+.....++.+.+...+.+=.
T Consensus 261 ~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy~ 295 (449)
T PRK09058 261 AKAVEKGKLPPPATPAERADMYAYGVEFLAKAGWR 295 (449)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 1 2344555666666766666543
No 204
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=28.94 E-value=6e+02 Score=26.59 Aligned_cols=156 Identities=10% Similarity=0.010 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHcCCcEEEe-cccccccccCccccchhhhhhhhccc--hh--hccCcccCCCCCCCchHHHHHHHHHH
Q 008330 75 KQPMDMLSKRVVDMGFNCVRL-TWPLYLATNDSLASLTVRQSFQKLGL--LE--AIGGIQSNNPSIVDLPLIKAFQAVVA 149 (570)
Q Consensus 75 ~~~~~~~~~~i~~~GfN~VRl-Pi~~~~~~~~~~~n~tv~~s~~~lg~--~~--~~~g~~~~nP~~~~~t~l~~ld~vV~ 149 (570)
...+++.++.|++.|+.-|-+ |+..+ |+..|....++.+.- .+ ....+...++...++.+++.+-..|.
T Consensus 99 ~P~i~~~l~~l~~~g~~~ivvlPLyPq------yS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~ 172 (316)
T PF00762_consen 99 PPSIEDALEELKADGVDRIVVLPLYPQ------YSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIR 172 (316)
T ss_dssp SSBHHHHHHHHHHTT-SEEEEEESSSS--------TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeCCCc------hhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHH
Confidence 345889999999999988776 66543 333344433332210 00 01112233444556778888888887
Q ss_pred HHhcC-----CCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChh
Q 008330 150 SLGNN-----NVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVK 224 (570)
Q Consensus 150 ~a~~~-----Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~ 224 (570)
.+.+. +..+|+..|..+-.- ...+ +|.| .++..+.-+.|+++..-..-.++|.-.--| .+|-
T Consensus 173 ~~l~~~~~~~~~~llfSaHglP~~~----~~~~---GdpY--~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~-~~WL--- 239 (316)
T PF00762_consen 173 EALERFPRGEPDHLLFSAHGLPQRY----VEDK---GDPY--PAQCEETARLIAERLGLPEWRLAFQSRFGP-GEWL--- 239 (316)
T ss_dssp HHHTTS-HCCCEEEEEEEE--BHHH----HTCC---T-SH--HHHHHHHHHHHHHHTTTSSEEEEEES-SSS-S-BS---
T ss_pred HHHHhcCCCCCCEEEEccCCCCccc----cccC---CCCh--HHHHHHHHHHHHHHcCCCceEEEEECCCCC-CCCc---
Confidence 66555 499999999875211 0001 1333 566777778899998655556778876444 2221
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 008330 225 DWYRYMQLGAEAVHAANPEVLVILSGL 251 (570)
Q Consensus 225 ~W~~~~~~~~~aIr~~dp~~lIiVeG~ 251 (570)
..+.++.++.+.+.+-++++++...
T Consensus 240 --~P~~~~~l~~l~~~G~~~V~v~p~g 264 (316)
T PF00762_consen 240 --GPSTEDVLEELAKEGVKRVVVVPPG 264 (316)
T ss_dssp --SSBHHHHHHHHHHCT-SEEEEEETT
T ss_pred --cccHHHHHHHHHhcCCCeEEEECCc
Confidence 1123455566667777777887653
No 205
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=28.84 E-value=1.9e+02 Score=32.84 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=36.2
Q ss_pred ChHHHHH---HHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHh
Q 008330 76 QPMDMLS---KRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLG 152 (570)
Q Consensus 76 ~~~~~~~---~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~ 152 (570)
.++++.+ ..+++.|+..||+.+... ..-+.+..+.+.+.
T Consensus 42 ~D~~atv~Qi~~L~~aGceiVRvtvp~~--------------------------------------~~A~al~~I~~~L~ 83 (606)
T PRK00694 42 TDVDGTVRQICALQEWGCDIVRVTVQGL--------------------------------------KEAQACEHIKERLI 83 (606)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCCH--------------------------------------HHHHhHHHHHHHHh
Confidence 4455444 456788999999987542 12355777888877
Q ss_pred cCCCE--EEEecCCCC
Q 008330 153 NNNVM--VILDNHISK 166 (570)
Q Consensus 153 ~~Gl~--VILD~H~~~ 166 (570)
+.|.. +|-|+|-.+
T Consensus 84 ~~g~~iPLVADIHF~~ 99 (606)
T PRK00694 84 QQGISIPLVADIHFFP 99 (606)
T ss_pred ccCCCCCEEeecCCCh
Confidence 77766 577998753
No 206
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=28.62 E-value=2.2e+02 Score=32.58 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=35.7
Q ss_pred ChHHHHH---HHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHh
Q 008330 76 QPMDMLS---KRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLG 152 (570)
Q Consensus 76 ~~~~~~~---~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~ 152 (570)
.++++.+ ..+++.|+..||+.+... ..-+.+..+.+...
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~~--------------------------------------~~a~~l~~I~~~l~ 79 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQGV--------------------------------------REAENLMNINIGLR 79 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCCH--------------------------------------HHHHhHHHHHHHHh
Confidence 4455544 456788999999987541 12345777777777
Q ss_pred cCCCE--EEEecCCCC
Q 008330 153 NNNVM--VILDNHISK 166 (570)
Q Consensus 153 ~~Gl~--VILD~H~~~ 166 (570)
+.|.. +|-|+|-.+
T Consensus 80 ~~G~~iPLVADIHF~~ 95 (611)
T PRK02048 80 SQGYMVPLVADVHFNP 95 (611)
T ss_pred hcCCCCCEEEecCCCc
Confidence 77655 577998753
No 207
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.37 E-value=38 Score=36.42 Aligned_cols=61 Identities=20% Similarity=0.440 Sum_probs=45.3
Q ss_pred eeeeecCCCCceecCCCCCCC---CccccCC-cceeecccceEEeeccCCccceeccccC--CCCCceeE
Q 008330 421 LCVQRKSFLDPLTLGPCTESE---AWSYTPH-KTISLKGAYFCLQAKHVGKPAKLGIICT--DCGSTWEI 484 (570)
Q Consensus 421 ~c~~~~~~~~~~~~~~c~~~~---~W~~~~~-~~~~~~~~~~cl~a~~~g~~~~~~~~c~--~~~~~W~~ 484 (570)
+|+...+. .+.+.-|+.++ .|+|... +.+.-.-.++||+....++.+.|++ |. ...|+|.+
T Consensus 531 ~CltAdg~--~i~~~hC~lgtv~g~WqY~~~tk~~~H~~~~kC~~~se~~~qv~l~~-Cd~~~~~Qkw~~ 597 (603)
T KOG3737|consen 531 QCLTADGS--KIMITHCNLGTVKGEWQYFKNTKRFTHIPSGKCLDRSEVLHQVFLSN-CDSSKTTQKWEM 597 (603)
T ss_pred eeeecCCc--eEEEEEeecccccCceehhhcchheeeccccccccccchhheeeecc-cCCCchhheeeh
Confidence 37775332 37888899885 8999744 3555557899999999999999954 55 45699987
No 208
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=27.98 E-value=3.4e+02 Score=27.17 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+++.++..++.||++|-|.-..-++ -.+...+.|+.+.+.|++
T Consensus 92 vdeyl~e~~~lGfe~iEIS~G~i~m-------------------------------------~~eek~~lIe~a~d~Gf~ 134 (258)
T COG1809 92 VDEYLNEAKELGFEAIEISNGTIPM-------------------------------------STEEKCRLIERAVDEGFM 134 (258)
T ss_pred HHHHHHHHHHcCccEEEecCCeeec-------------------------------------chHHHHHHHHHHHhcccE
Confidence 6888999999999999884332111 123467889999999999
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEE--EEeccCCCCCCCCChhHHHHHHHHHHH
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVV--GMSLRNELRGPKQNVKDWYRYMQLGAE 235 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vi--g~dL~NEP~~~~~~~~~W~~~~~~~~~ 235 (570)
|.-.+-.-.|. . +....++.+++......++=+.+ |+ +=+..=| .+...+..+|.. +.+..
T Consensus 135 vlsEvGkk~~e-------~-----~~~l~~~d~~k~i~~dvdaGa~~--vi~eAresg~~-~Gi~~~~g~~r~--~~~~~ 197 (258)
T COG1809 135 VLSEVGKKDPE-------S-----DSALSPDDRVKLINDDVDAGAEY--VIAEARESGKE-IGITDNEGEVRE--GELDS 197 (258)
T ss_pred EehhhcccCcc-------h-----hhhcChHHHHHHHHHHHHcchHH--hhhhhhhhccc-cCccccccchhh--hHHHH
Confidence 98765332210 0 12245677776665555443332 22 1222222 344445556653 23344
Q ss_pred HHHhcCCCcEEEEeCCC
Q 008330 236 AVHAANPEVLVILSGLN 252 (570)
Q Consensus 236 aIr~~dp~~lIiVeG~~ 252 (570)
.|..++=++ ||+|.++
T Consensus 198 ii~~l~i~r-viFEAp~ 213 (258)
T COG1809 198 IIKGLGINR-VIFEAPQ 213 (258)
T ss_pred HHhcCCchh-eeeecCC
Confidence 455555555 4555543
No 209
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD). FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.
Probab=27.86 E-value=1.2e+02 Score=29.51 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCCCceeEeec-cccEEEEecCCCceEEEeec
Q 008330 477 DCGSTWEIISD-SKMHLSSKADNGTTVCLDVD 507 (570)
Q Consensus 477 ~~~~~W~~~s~-~~~~~~~~~~~~~~~cld~~ 507 (570)
++.|.|..+-- |.-+++++..+|.||+.|..
T Consensus 25 ~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk~ 56 (191)
T PF06229_consen 25 DPRQVWVATRVPGDEKIAFKSGHGKYLSCDKD 56 (191)
T ss_dssp -TTT-EEEEE--SSS-EEEEETTS-BEEE-SS
T ss_pred ChhHeEEEEEecCCCceEeeccCccEEEEcCC
Confidence 56788976433 44469999999999999864
No 210
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=27.76 E-value=1.2e+02 Score=30.71 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
.+++.++..+++||++|=|.-..--+ ..+...++|+.+.++|+
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l-------------------------------------~~~~r~~~I~~~~~~Gf 127 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDL-------------------------------------PEEERLRLIRKAKEEGF 127 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS----------------------------------------HHHHHHHHHHHCCTTS
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeC-------------------------------------CHHHHHHHHHHHHHCCC
Confidence 46889999999999999984332100 12345678999999999
Q ss_pred EEEEecCC
Q 008330 157 MVILDNHI 164 (570)
Q Consensus 157 ~VILD~H~ 164 (570)
+|+--+..
T Consensus 128 ~v~~EvG~ 135 (244)
T PF02679_consen 128 KVLSEVGK 135 (244)
T ss_dssp EEEEEES-
T ss_pred EEeecccC
Confidence 99998774
No 211
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=26.51 E-value=4e+02 Score=27.46 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+.+..+.+++.|.+.+|-.- |...|-+=+||.+| .+.++..-+.+.++|+.
T Consensus 61 i~~~A~~vk~~Ga~~lRGga---------fKPRTSPYsFQGlg--------------------e~gL~~l~~a~~~~Gl~ 111 (286)
T COG2876 61 VRETAESVKAAGAKALRGGA---------FKPRTSPYSFQGLG--------------------EEGLKLLKRAADETGLP 111 (286)
T ss_pred HHHHHHHHHHcchhhccCCc---------CCCCCCcccccccC--------------------HHHHHHHHHHHHHcCCe
Confidence 56677889999999999732 22223222343322 35677777888999999
Q ss_pred EEEecC
Q 008330 158 VILDNH 163 (570)
Q Consensus 158 VILD~H 163 (570)
|+-.+-
T Consensus 112 vvtEvm 117 (286)
T COG2876 112 VVTEVM 117 (286)
T ss_pred eEEEec
Confidence 987643
No 212
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=25.83 E-value=67 Score=25.77 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=20.1
Q ss_pred CCCeEecCCeEEcCCCCEEEEEEee
Q 008330 36 GLPLSTNSRWIVDENGHRVKLACVN 60 (570)
Q Consensus 36 ~~~L~t~G~~IVd~~G~~v~L~GVN 60 (570)
-..+++.|+-+.|++|+++.+.||+
T Consensus 67 ~~wi~~~~~~~~d~~g~~~~~~Gv~ 91 (91)
T PF08447_consen 67 YRWIEVRGRPIFDENGKPIRIIGVI 91 (91)
T ss_dssp EEEEEEEEEEEETTTS-EEEEEEEE
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEC
Confidence 3457888888889999999999986
No 213
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.69 E-value=6.8e+02 Score=24.95 Aligned_cols=78 Identities=6% Similarity=-0.052 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC
Q 008330 141 IKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK 220 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~ 220 (570)
.+..+++++.+.++||.+++-+|-..+ .++. +.+++ ..+.++-+. . +|...
T Consensus 115 ~~~~~~~~~~~~~~Gl~~~~~v~p~T~-------------------~e~l----~~~~~---~~~~~l~ms-v-~~~~g- 165 (244)
T PRK13125 115 PDDLEKYVEIIKNKGLKPVFFTSPKFP-------------------DLLI----HRLSK---LSPLFIYYG-L-RPATG- 165 (244)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCC-------------------HHHH----HHHHH---hCCCEEEEE-e-CCCCC-
Confidence 356889999999999999998875321 2222 22222 244555452 2 44332
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCcEEEEeC
Q 008330 221 QNVKDWYRYMQLGAEAVHAANPEVLVILSG 250 (570)
Q Consensus 221 ~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG 250 (570)
+ .+...+.+-++.+|+..++..|.++|
T Consensus 166 ~---~~~~~~~~~i~~lr~~~~~~~i~v~g 192 (244)
T PRK13125 166 V---PLPVSVERNIKRVRNLVGNKYLVVGF 192 (244)
T ss_pred C---CchHHHHHHHHHHHHhcCCCCEEEeC
Confidence 1 25555666778888877666677765
No 214
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=25.49 E-value=4.9e+02 Score=25.82 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC
Q 008330 140 LIKAFQAVVASLGNNNVMVILDNHI 164 (570)
Q Consensus 140 ~l~~ld~vV~~a~~~Gl~VILD~H~ 164 (570)
.++..+..|..++++|++|++-+..
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg 73 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILG 73 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECC
Confidence 3566788899999999999998754
No 215
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.44 E-value=1.2e+02 Score=30.61 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
++..++..+.+|.+.||++- ...... ..-..++ ....+.++++.+.|.++||.
T Consensus 96 ~~~~i~~a~~lG~~~v~~~~-~~~~~~-----~~~~~~~---------------------~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLAG-YDVYYE-----EKSEETR---------------------QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred HHHHHHHHHHhCCCEEEECC-cccccc-----cccHHHH---------------------HHHHHHHHHHHHHHHHhCCE
Confidence 35667778899999999852 111000 0000111 23567899999999999999
Q ss_pred EEEecCC
Q 008330 158 VILDNHI 164 (570)
Q Consensus 158 VILD~H~ 164 (570)
+.+-+|.
T Consensus 149 l~lE~~~ 155 (284)
T PRK13210 149 LAVEIMD 155 (284)
T ss_pred EEEEecC
Confidence 9999884
No 216
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=25.36 E-value=32 Score=21.17 Aligned_cols=8 Identities=38% Similarity=1.468 Sum_probs=6.5
Q ss_pred EEEeeCCC
Q 008330 56 LACVNWVS 63 (570)
Q Consensus 56 L~GVNw~g 63 (570)
+||+||+-
T Consensus 3 ikCiNWFE 10 (22)
T PF08452_consen 3 IKCINWFE 10 (22)
T ss_pred cEEeehhh
Confidence 78999973
No 217
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=25.20 E-value=1e+02 Score=30.65 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEEE
Q 008330 80 MLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVI 159 (570)
Q Consensus 80 ~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VI 159 (570)
..++...++|.+.|=+.+++..+..+. ....++.+.++++.|.++||.||
T Consensus 80 ~~ve~A~~~GAd~vd~vi~~~~~~~~~------------------------------~~~~~~~i~~v~~~~~~~gl~vI 129 (236)
T PF01791_consen 80 AEVEEAIRLGADEVDVVINYGALGSGN------------------------------EDEVIEEIAAVVEECHKYGLKVI 129 (236)
T ss_dssp HHHHHHHHTT-SEEEEEEEHHHHHTTH------------------------------HHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHcCCceeeeecccccccccc------------------------------HHHHHHHHHHHHHHHhcCCcEEE
Confidence 556777899999999988774332210 02357789999999999999999
Q ss_pred Ee
Q 008330 160 LD 161 (570)
Q Consensus 160 LD 161 (570)
|-
T Consensus 130 lE 131 (236)
T PF01791_consen 130 LE 131 (236)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 218
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=25.07 E-value=1.2e+02 Score=31.78 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
+..+.++.+++.|+..||| +.. --.++.+...-||
T Consensus 14 ~p~~vv~l~ks~~i~~vri-~d~--------------------------------------------~~~iL~a~a~S~i 48 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI-YDA--------------------------------------------DPSILRAFAGSGI 48 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE-SS----------------------------------------------HHHHHHHTTS--
T ss_pred CHHHHHHHHHhcccccEEe-ecC--------------------------------------------cHHHHHHHhcCCc
Confidence 4678899999999999999 211 1357777888899
Q ss_pred EEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHH-HHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHH
Q 008330 157 MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTK-MATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAE 235 (570)
Q Consensus 157 ~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~-iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~ 235 (570)
.|++.+=...-. ...+-......|-+ =...|....++-.+=+.||....... ......|+...+
T Consensus 49 ~v~v~vpN~~l~--------------~la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~~~~-~~lvpAm~ni~~ 113 (310)
T PF00332_consen 49 EVMVGVPNEDLA--------------SLASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTGTDN-AYLVPAMQNIHN 113 (310)
T ss_dssp EEEEEE-GGGHH--------------HHHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCCSGG-GGHHHHHHHHHH
T ss_pred eeeeccChHHHH--------------HhccCHHHHhhhhhhcccccCcccceeeeecccccccCccc-eeeccHHHHHHH
Confidence 999875321000 00001122334422 12223344567777888998665322 246667777777
Q ss_pred HHHhcCCC
Q 008330 236 AVHAANPE 243 (570)
Q Consensus 236 aIr~~dp~ 243 (570)
++.+.+=.
T Consensus 114 aL~~~~L~ 121 (310)
T PF00332_consen 114 ALTAAGLS 121 (310)
T ss_dssp HHHHTT-T
T ss_pred HHHhcCcC
Confidence 77776554
No 219
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=24.53 E-value=4.4e+02 Score=27.33 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=54.9
Q ss_pred HHHHHHhcCCCEE------EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH--HhCCCCcEEEEeccCCCC
Q 008330 146 AVVASLGNNNVMV------ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT--IFNGVRNVVGMSLRNELR 217 (570)
Q Consensus 146 ~vV~~a~~~Gl~V------ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~--ryk~~p~Vig~dL~NEP~ 217 (570)
+.+=.++..|+-| .+-+|...+.| ++ ....++.+.++.+.+.+ .......|+ .
T Consensus 19 AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~----------~g-~v~~~e~l~~~l~~l~~~~~~~~~davl--------t 79 (281)
T COG2240 19 AAIFPLQRLGLDVWAVPTVQFSNHTGYGKW----------TG-IVMPPEQLADLLNGLEAIDKLGECDAVL--------T 79 (281)
T ss_pred hHHHHHHHcCCceeeeceEEecCCCCCCCC----------CC-cCCCHHHHHHHHHHHHhcccccccCEEE--------E
Confidence 3444455556654 55666543322 22 23456778888888877 566677776 2
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 008330 218 GPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLN 252 (570)
Q Consensus 218 ~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~ 252 (570)
|.-++..+- +.+.+++.+||+.+|+.++++++.-
T Consensus 80 GYlgs~~qv-~~i~~~v~~vk~~~P~~~~l~DPVM 113 (281)
T COG2240 80 GYLGSAEQV-RAIAGIVKAVKEANPNALYLCDPVM 113 (281)
T ss_pred ccCCCHHHH-HHHHHHHHHHhccCCCeEEEeCCcc
Confidence 333344444 4455788999999999999998763
No 220
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=24.40 E-value=4.2e+02 Score=28.20 Aligned_cols=90 Identities=9% Similarity=0.143 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC-CCCCh
Q 008330 145 QAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG-PKQNV 223 (570)
Q Consensus 145 d~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~-~~~~~ 223 (570)
+.++..|.++|++|++.-.... ..-.++ ...++|++-...++++|. ...|- +|.-+ |.. ...+.
T Consensus 67 ~~~~~~A~~~~v~v~~~~~~~~-----------~~l~~~-~~R~~fi~siv~~~~~~g-fDGId-IDwE~-p~~~~~~d~ 131 (358)
T cd02875 67 DELLCYAHSKGVRLVLKGDVPL-----------EQISNP-TYRTQWIQQKVELAKSQF-MDGIN-IDIEQ-PITKGSPEY 131 (358)
T ss_pred HHHHHHHHHcCCEEEEECccCH-----------HHcCCH-HHHHHHHHHHHHHHHHhC-CCeEE-EcccC-CCCCCcchH
Confidence 4788899999999998621110 000111 124567666666666663 34443 33322 221 11234
Q ss_pred hHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 224 KDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 224 ~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
+.+...++++.+++++.++..+|.+.
T Consensus 132 ~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 132 YALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 56777888888889888777666663
No 221
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.35 E-value=2.6e+02 Score=27.86 Aligned_cols=60 Identities=7% Similarity=0.089 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+++.++..+.+|...|+++..... . .+ ..++.. ....+.+.++.+.|+++||.
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~~~--~-~~---~~~~~~---------------------~~~~~~l~~l~~~a~~~Gv~ 139 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGKTP--A-GF---SSEQIH---------------------ATLVENLRYAANMLMKEDIL 139 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCC--C-CC---CHHHHH---------------------HHHHHHHHHHHHHHHHcCCE
Confidence 466778888999999998764310 0 00 000100 13456788889999999999
Q ss_pred EEEecCC
Q 008330 158 VILDNHI 164 (570)
Q Consensus 158 VILD~H~ 164 (570)
+.+-.|.
T Consensus 140 l~lE~~n 146 (258)
T PRK09997 140 LLIEPIN 146 (258)
T ss_pred EEEEeCC
Confidence 9998753
No 222
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.78 E-value=3.1e+02 Score=27.66 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHH-hcCCCcEEEEe
Q 008330 191 IKGLTKMATIFNGVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVH-AANPEVLVILS 249 (570)
Q Consensus 191 ~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr-~~dp~~lIiVe 249 (570)
...++.|.+++.+..-++.-|-.|=|.|.+ +.++...++.++++.+. +.+.+.+||-=
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~k-s~~~i~~~~~~~~~~L~~~~g~d~ivIaC 69 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEK-SPEFILEYVLELLTFLKERHNIKLLVVAC 69 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCC-CHHHHHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 356888999998888899999999999986 46778888889999998 88888876653
No 223
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=23.62 E-value=8.7e+02 Score=25.95 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCC-
Q 008330 142 KAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPK- 220 (570)
Q Consensus 142 ~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~- 220 (570)
+.+.++++.+.+.++.|-+|+=..-|+ .+.+.|.+..+++.+ + +-+.|-.+.|.=||..+-
T Consensus 140 ~~~~~ai~~~~~~~~~v~~dli~GlPg----------------qt~~~~~~~l~~~~~-l-~p~~is~y~L~~~~gT~l~ 201 (380)
T PRK09057 140 AEALAAIDLAREIFPRVSFDLIYARPG----------------QTLAAWRAELKEALS-L-AADHLSLYQLTIEEGTAFY 201 (380)
T ss_pred HHHHHHHHHHHHhCccEEEEeecCCCC----------------CCHHHHHHHHHHHHh-c-CCCeEEeecceecCCChHH
Confidence 345567777887788888887432221 356777776666664 3 334577788888875320
Q ss_pred ----------CChhHHHHHHHHHHHHHHhcC
Q 008330 221 ----------QNVKDWYRYMQLGAEAVHAAN 241 (570)
Q Consensus 221 ----------~~~~~W~~~~~~~~~aIr~~d 241 (570)
.+.+.....++.+.+.+.+.+
T Consensus 202 ~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G 232 (380)
T PRK09057 202 GLHAAGKLILPDEDLAADLYELTQEITAAAG 232 (380)
T ss_pred HHHhcCCCCCCChHHHHHHHHHHHHHHHHcC
Confidence 122333344555555555554
No 224
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=23.17 E-value=2e+02 Score=24.94 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCcccc--CCc-ceeec-ccceEEeeccCCccceeccccCCCCCceeEeeccccEEEEecCCCceEEEeecCCCceee
Q 008330 441 EAWSYT--PHK-TISLK-GAYFCLQAKHVGKPAKLGIICTDCGSTWEIISDSKMHLSSKADNGTTVCLDVDSSNTIVT 514 (570)
Q Consensus 441 ~~W~~~--~~~-~~~~~-~~~~cl~a~~~g~~~~~~~~c~~~~~~W~~~s~~~~~~~~~~~~~~~~cld~~~~~~~~~ 514 (570)
+-|+.+ ..+ .+.|+ .++++|.+.++|.- ...-+-.++...|++.-.++ .+.....+|.||+ +..+|.+.+
T Consensus 25 e~f~le~~~~~~~v~lrs~~GkYls~~~~G~v-~~~~~~~~~~~~F~i~~~~~-~~~~~~~nGkYl~--~~~~g~l~a 98 (111)
T PF06268_consen 25 ETFQLEFDDGSYKVALRSHNGKYLSVDSDGSV-VADSETPGPDEFFEIEWHGG-KVALRASNGKYLS--AGPNGQLKA 98 (111)
T ss_dssp GSEEEEEETTEEEEEEECTTSEEEEEETTSEE-EEEESSSSGGGCBEEEEETT-EEEEECTTSCEEE--EETTTEEEE
T ss_pred EEEEEEEECCCCEEEEEcCCCCEEEEcCCCeE-EecCCCCCCCcEEEEEECCC-EEEEECCCCCEEe--eCCCCeEEE
Confidence 456665 222 32343 58899999999862 22122115567788866655 3555678999999 445666544
No 225
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.10 E-value=3.7e+02 Score=28.58 Aligned_cols=86 Identities=9% Similarity=-0.048 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCCE-EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC
Q 008330 141 IKAFQAVVASLGNNNVM-VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl~-VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~ 219 (570)
.+.+.++|+.+.+.|+. |-+|+=..-|+ .+.+.|.+.++.+.+ .+- ..|..|.|.=||.-+
T Consensus 138 ~~~~~~ai~~lr~~G~~~v~~dlI~GlPg----------------qt~e~~~~tl~~~~~-l~p-~~is~y~L~~~~gT~ 199 (353)
T PRK05904 138 IQDSKEAINLLHKNGIYNISCDFLYCLPI----------------LKLKDLDEVFNFILK-HKI-NHISFYSLEIKEGSI 199 (353)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeecCCC----------------CCHHHHHHHHHHHHh-cCC-CEEEEEeeEecCCCh
Confidence 45577889999999986 77775432221 456778777776654 331 234455555455321
Q ss_pred C------CChhHHHHHHHHHHHHHHhcCCCc
Q 008330 220 K------QNVKDWYRYMQLGAEAVHAANPEV 244 (570)
Q Consensus 220 ~------~~~~~W~~~~~~~~~aIr~~dp~~ 244 (570)
. -..+.-...++.+.+...+.+-++
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 200 LKKYHYTIDEDKEAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHcCCcE
Confidence 0 012233344455666666665544
No 226
>PLN03244 alpha-amylase; Provisional
Probab=22.83 E-value=70 Score=37.79 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=24.9
Q ss_pred CcccCCCCCCCchHHHHHHHHHHHHhcCCCEEEEec
Q 008330 127 GIQSNNPSIVDLPLIKAFQAVVASLGNNNVMVILDN 162 (570)
Q Consensus 127 g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~VILD~ 162 (570)
+.++.++.+.. .+-|+++|++|-++||.||||+
T Consensus 429 ~fFApssRYGT---PeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 429 NFFAASSRYGT---PDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred cccccCcccCC---HHHHHHHHHHHHHCCCEEEEEe
Confidence 33444555432 4679999999999999999994
No 227
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.52 E-value=3.2e+02 Score=30.52 Aligned_cols=43 Identities=12% Similarity=0.073 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCC-EEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 008330 141 IKAFQAVVASLGNNNV-MVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMAT 199 (570)
Q Consensus 141 l~~ld~vV~~a~~~Gl-~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ 199 (570)
.+.+.++++.|.+.|+ .|-+|+-..-|+ .+.+.+.+..+.+.+
T Consensus 304 ~e~v~~ai~~ar~~Gf~~In~DLI~GLPg----------------Et~ed~~~tl~~l~~ 347 (488)
T PRK08207 304 VEDIIEKFHLAREMGFDNINMDLIIGLPG----------------EGLEEVKHTLEEIEK 347 (488)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEEeCCCC----------------CCHHHHHHHHHHHHh
Confidence 4567788999999999 666776543222 346777777766544
No 228
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=22.28 E-value=2.4e+02 Score=25.77 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCCcEEEEeccCCCCCCC---CChhHHHHHHHHHHHHHHhcCCCcEEEEe
Q 008330 194 LTKMATIFNGVRNVVGMSLRNELRGPK---QNVKDWYRYMQLGAEAVHAANPEVLVILS 249 (570)
Q Consensus 194 w~~iA~ryk~~p~Vig~dL~NEP~~~~---~~~~~W~~~~~~~~~aIr~~dp~~lIiVe 249 (570)
|..++++++..-.|+.+|+..--.... .....+..+++.+.+.|++.+.+.+++|+
T Consensus 14 ~~~~~~~l~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG 72 (228)
T PF12697_consen 14 WDPLAEALARGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVG 72 (228)
T ss_dssp GHHHHHHHHTTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred HHHHHHHHhCCCEEEEEecCCccccccccccCCcchhhhhhhhhhcccccccccccccc
Confidence 344555554555789999986322211 02345667777788888888877777774
No 229
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=22.04 E-value=4.1e+02 Score=31.12 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=34.5
Q ss_pred ChHHHHH---HHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHh
Q 008330 76 QPMDMLS---KRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLG 152 (570)
Q Consensus 76 ~~~~~~~---~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~ 152 (570)
.++++.+ ..+++.|+..||+.+... ..-+.+..+.+.+.
T Consensus 107 ~D~eatv~Qi~~l~~aGceiVRvtv~~~--------------------------------------~~A~al~~I~~~L~ 148 (733)
T PLN02925 107 KDVEATVDQVMRIADKGADIVRITVQGK--------------------------------------KEADACFEIKNTLV 148 (733)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCCH--------------------------------------HHHHhHHHHHHHHh
Confidence 4455444 456788999999987542 12245667777666
Q ss_pred cCCCE--EEEecCCCC
Q 008330 153 NNNVM--VILDNHISK 166 (570)
Q Consensus 153 ~~Gl~--VILD~H~~~ 166 (570)
+.|.. +|-|+|-.+
T Consensus 149 ~~g~~iPLVADIHF~~ 164 (733)
T PLN02925 149 QKGYNIPLVADIHFAP 164 (733)
T ss_pred hcCCCCCEEEecCCCH
Confidence 66644 678888753
No 230
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=21.95 E-value=1.9e+02 Score=22.39 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHh-CCCCcEEEEeccCCCCCC
Q 008330 187 PDLWIKGLTKMATIF-NGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 187 ~~~~~~~w~~iA~ry-k~~p~Vig~dL~NEP~~~ 219 (570)
.++|.+.++.++... +..|+.+++++.-.+..+
T Consensus 15 ~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 48 (78)
T PF03992_consen 15 EEEFLAAFQELAEATLRKEPGCLSYELYRSLDDP 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTEEEEEEEEESSST
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCC
Confidence 589999999999988 899999999998755554
No 231
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.95 E-value=3.5e+02 Score=27.54 Aligned_cols=24 Identities=4% Similarity=0.081 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecC
Q 008330 140 LIKAFQAVVASLGNNNVMVILDNH 163 (570)
Q Consensus 140 ~l~~ld~vV~~a~~~Gl~VILD~H 163 (570)
.++.+...|+.++++|+.|.+.+-
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEE
Confidence 356788899999999999988754
No 232
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=21.71 E-value=2e+02 Score=24.91 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Q 008330 144 FQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNEL 216 (570)
Q Consensus 144 ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP 216 (570)
++.+|. +.+-.|+|++|. .||.. =..+...|++++++|+++...+.+-.+|.-
T Consensus 11 f~~~i~---~~~~~vvV~f~a---~wC~~--------------C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 11 FNSALL---GSPSAWLVEFYA---SWCGH--------------CRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred HHHHHh---cCCCeEEEEEEC---CCCHH--------------HHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 555554 344699999996 46511 123455788999999887665545556643
No 233
>PRK09936 hypothetical protein; Provisional
Probab=21.46 E-value=9.4e+02 Score=25.10 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCC
Q 008330 77 PMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNV 156 (570)
Q Consensus 77 ~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl 156 (570)
..++.+..+++.||+++=+=|+-. .+. ++... --.+.+.++.|.+.||
T Consensus 39 qWq~~~~~~~~~G~~tLivQWt~y--G~~----------------------------~fg~~--~g~La~~l~~A~~~Gl 86 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTLVVQWTRY--GDA----------------------------DFGGQ--RGWLAKRLAAAQQAGL 86 (296)
T ss_pred HHHHHHHHHHHcCCcEEEEEeeec--cCC----------------------------Ccccc--hHHHHHHHHHHHHcCC
Confidence 467899999999999998877532 110 11111 1237789999999999
Q ss_pred EEEEecCCCCC
Q 008330 157 MVILDNHISKP 167 (570)
Q Consensus 157 ~VILD~H~~~~ 167 (570)
.|+|-++.++.
T Consensus 87 ~v~vGL~~Dp~ 97 (296)
T PRK09936 87 KLVVGLYADPE 97 (296)
T ss_pred EEEEcccCChH
Confidence 99999887653
No 234
>COG4996 Predicted phosphatase [General function prediction only]
Probab=21.41 E-value=2.2e+02 Score=26.18 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCCeEecCCeEEcCCCCEEEEEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCC
Q 008330 36 GLPLSTNSRWIVDENGHRVKLACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGF 90 (570)
Q Consensus 36 ~~~L~t~G~~IVd~~G~~v~L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~Gf 90 (570)
.++-+++...|+|..|.+|.|++ .+.+.++..+.-|.
T Consensus 22 pPf~rVs~n~i~Ds~G~ev~L~~------------------~v~~~l~warnsG~ 58 (164)
T COG4996 22 PPFRRVSSNTIEDSKGREVHLFP------------------DVKETLKWARNSGY 58 (164)
T ss_pred CcceecCccceecCCCeEEEEcH------------------HHHHHHHHHHhCCc
Confidence 34457888899999999999854 25667777777775
No 235
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=21.19 E-value=4.5e+02 Score=28.99 Aligned_cols=101 Identities=12% Similarity=0.208 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCE
Q 008330 78 MDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVM 157 (570)
Q Consensus 78 ~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~ 157 (570)
+.+....+++.|+|.+=|- |..|. +..-.+....++..+.++.+-.+.+||+
T Consensus 185 ~kDYAR~laSiGINg~v~N------------NVNvk----------------~~e~~lit~~fl~k~aklAdiFR~YGIK 236 (684)
T COG3661 185 MKDYARALASIGINGTVLN------------NVNVK----------------KAESYLITAPFLAKAAKLADIFRPYGIK 236 (684)
T ss_pred HHHHHHHHhhcCcceEEec------------ccccc----------------hhhhheechHhHHHHHHHHHHhhhccce
Confidence 5677778889999988761 11111 0111334556888899999999999999
Q ss_pred EEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHH-HHHHhCCCCcEEEEecc
Q 008330 158 VILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTK-MATIFNGVRNVVGMSLR 213 (570)
Q Consensus 158 VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~-iA~ryk~~p~Vig~dL~ 213 (570)
|.|...-..|....+. + -.|+ .+ ++..+.|+. .++-|+--|..-||=+.
T Consensus 237 ~yLsinfaSP~~lGgL-~----TADP-LD-e~VrawWkeka~~IY~yIPDFGGFLVK 286 (684)
T COG3661 237 VYLSINFASPMELGGL-K----TADP-LD-EAVRAWWKEKADEIYKYIPDFGGFLVK 286 (684)
T ss_pred EEEEeccCCccccCCc-C----cCCc-cc-HHHHHHHHHHHHHHHHhcccccceEEe
Confidence 9998876655322111 0 0122 22 445567765 55667777766555444
No 236
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.17 E-value=2e+02 Score=24.96 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=33.0
Q ss_pred CCCcEEEEeccCCCCCCCCChhHHHHHHHHHHHHHHhcCC-CcEEEEeCCCCC
Q 008330 203 GVRNVVGMSLRNELRGPKQNVKDWYRYMQLGAEAVHAANP-EVLVILSGLNFD 254 (570)
Q Consensus 203 ~~p~Vig~dL~NEP~~~~~~~~~W~~~~~~~~~aIr~~dp-~~lIiVeG~~w~ 254 (570)
..|.++++...++.+. ..+.+.++++|+..| +..|+++|....
T Consensus 49 ~~pdvV~iS~~~~~~~---------~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 49 EDADAIGLSGLLTTHM---------TLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred cCCCEEEEeccccccH---------HHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 4778999988866642 344677899999998 899999997543
No 237
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=21.14 E-value=6.4e+02 Score=27.93 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCEEE--EEEeeCCCCCCccccCCCCCChHHHHHHHHHHcCCcEEEecccc
Q 008330 51 GHRVK--LACVNWVSHLEPVVAEGLSKQPMDMLSKRVVDMGFNCVRLTWPL 99 (570)
Q Consensus 51 G~~v~--L~GVNw~g~~~~~v~~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~ 99 (570)
+.+++ +||.|..|... .| ..-++++++...+.|+..||+..+.
T Consensus 75 ~~~l~~l~r~~N~~G~~~--~p----ddvv~~~v~~A~~~Gvd~irif~~l 119 (448)
T PRK12331 75 KTKLQMLLRGQNLLGYRN--YA----DDVVESFVQKSVENGIDIIRIFDAL 119 (448)
T ss_pred CCEEEEEecccccccccc--Cc----hhhHHHHHHHHHHCCCCEEEEEEec
Confidence 34444 78888766521 00 0125677888889999999996643
No 238
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=20.84 E-value=2.7e+02 Score=27.22 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcC-CCEEEEecCCCC
Q 008330 143 AFQAVVASLGNN-NVMVILDNHISK 166 (570)
Q Consensus 143 ~ld~vV~~a~~~-Gl~VILD~H~~~ 166 (570)
.-+.|-+.+.++ +|.++||+|.+.
T Consensus 69 Sr~tv~~~l~~~p~i~~viDiHRDs 93 (196)
T TIGR02867 69 SRETVKKALKENKDLKYIIDLHRDS 93 (196)
T ss_pred HHHHHHHHHHHCCCceEEEEeecCC
Confidence 334444455555 689999999963
No 239
>PRK10673 acyl-CoA esterase; Provisional
Probab=20.82 E-value=3e+02 Score=26.55 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCcEEEEeccCCCCCCC--CChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCcc
Q 008330 193 GLTKMATIFNGVRNVVGMSLRNELRGPK--QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNFDKDL 257 (570)
Q Consensus 193 ~w~~iA~ryk~~p~Vig~dL~NEP~~~~--~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w~~dl 257 (570)
.|..++.++...-.|+.+|+.. +|.. ....++..+++.+.+.|...+.+.+++| |..+|..+
T Consensus 31 ~~~~~~~~l~~~~~vi~~D~~G--~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lv-GhS~Gg~v 94 (255)
T PRK10673 31 NLGVLARDLVNDHDIIQVDMRN--HGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFI-GHSMGGKA 94 (255)
T ss_pred HHHHHHHHHhhCCeEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEE-EECHHHHH
Confidence 3566666666666899999975 1110 0112345556667777777777766555 44566543
No 240
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.39 E-value=4.5e+02 Score=24.44 Aligned_cols=97 Identities=7% Similarity=-0.018 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCC
Q 008330 139 PLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRG 218 (570)
Q Consensus 139 t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~ 218 (570)
..++.+..+++.|.+.|...|+- |.. .+... ... +.....+.+.+.++++++.-+.+.-.+.+|....+..
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~-~~g--~~~~~---~~~---~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVV-HSG--RYPSG---PED---DTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEE-ECT--TESSS---TTS---SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCceee-cCc--ccccc---cCC---CHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 46889999999999999988653 321 00000 000 0001245667788888888776666777886655543
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCCCc-EEEEeC
Q 008330 219 PKQNVKDWYRYMQLGAEAVHAANPEV-LVILSG 250 (570)
Q Consensus 219 ~~~~~~~W~~~~~~~~~aIr~~dp~~-lIiVeG 250 (570)
.. ... .+++...+.++++.. =|.++.
T Consensus 139 ~~--~~~----~~~~~~~l~~~~~~~~~i~~D~ 165 (213)
T PF01261_consen 139 ET--PFS----VEEIYRLLEEVDSPNVGICFDT 165 (213)
T ss_dssp SE--ESS----HHHHHHHHHHHTTTTEEEEEEH
T ss_pred cc--hhh----HHHHHHHHhhcCCCcceEEEeh
Confidence 21 111 245556777777544 344443
No 241
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.31 E-value=9e+02 Score=24.42 Aligned_cols=93 Identities=10% Similarity=-0.048 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEecc-CCCCC
Q 008330 140 LIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLR-NELRG 218 (570)
Q Consensus 140 ~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~-NEP~~ 218 (570)
.++...+.++.+.+.||.|...+-. +. + .+.++..+....+.+ + .+..+.+-.+ =.|..
T Consensus 156 s~~~~~~ai~~l~~~Gi~v~~~~i~--Gl------------~---et~~d~~~~~~~l~~-l--~~~~i~l~~l~p~~gT 215 (296)
T TIGR00433 156 TYDDRVDTLENAKKAGLKVCSGGIF--GL------------G---ETVEDRIGLALALAN-L--PPESVPINFLVKIKGT 215 (296)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeEEE--eC------------C---CCHHHHHHHHHHHHh-C--CCCEEEeeeeEEcCCC
Confidence 3456668888999999987543211 10 0 134555565555543 2 2232323332 11211
Q ss_pred CC--CChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 008330 219 PK--QNVKDWYRYMQLGAEAVHAANPEVLVILSGLNF 253 (570)
Q Consensus 219 ~~--~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w 253 (570)
+. ....+...++ +.+...|..-|+..|.+.+..|
T Consensus 216 ~l~~~~~~s~~~~~-~~ia~~r~~lp~~~i~~~~~~~ 251 (296)
T TIGR00433 216 PLADNKELSADDAL-KTIALARIIMPKAEIRLAGGRE 251 (296)
T ss_pred ccCCCCCCCHHHHH-HHHHHHHHHCCcceEEEeCCcc
Confidence 10 0112233333 5567778888888888877766
No 242
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=20.27 E-value=6.5e+02 Score=27.56 Aligned_cols=100 Identities=10% Similarity=0.039 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEecCCCCCCccccCCCCCCCCCCCCC--CHHHHHHHHHHHHHHhCCCCcEEEEec-cCC
Q 008330 139 PLIKAFQAVVASLGNNNVMVILDNHISKPGWCCSNSDGNGFFGDQYF--NPDLWIKGLTKMATIFNGVRNVVGMSL-RNE 215 (570)
Q Consensus 139 t~l~~ld~vV~~a~~~Gl~VILD~H~~~~~w~~~~~dgng~~~d~~~--~~~~~~~~w~~iA~ryk~~p~Vig~dL-~NE 215 (570)
-+++...++++.+++.|-..| .+...+ |+ .+-.+..+ ..+++++.+++|.++.-+. ..+.+|- ..|
T Consensus 147 ~AIeh~~~~i~Ig~elGs~~v-~IW~gD-G~--------~yP~Q~~~~~~~~rl~esL~eI~~~~pd~-~k~~iEyKpfE 215 (412)
T TIGR02629 147 QAVEHNLECIEIGKALGSKAL-TVWIGD-GS--------NFPGQSNFTRAFERYLDAMKAVYAGLPDD-WKLFTEHKMYE 215 (412)
T ss_pred HHHHHHHHHHHHHHHhCCCee-EEECCC-CC--------CCcCccchHHHHHHHHHHHHHHHhhCCcc-ceEEEecccCC
Confidence 478888899999999999987 655432 21 11111212 1233444444444443331 2455664 689
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 008330 216 LRGPKQNVKDWYRYMQLGAEAVHAANPEVLVILSGLNF 253 (570)
Q Consensus 216 P~~~~~~~~~W~~~~~~~~~aIr~~dp~~lIiVeG~~w 253 (570)
|+.......+|... +.++++++++.+|.++-..+
T Consensus 216 P~~ys~~v~d~g~~----yl~~~~lg~~~~vlLD~GH~ 249 (412)
T TIGR02629 216 PAFYSTVVQDWGTN----YLIAQELGPKAFCLVDLGHH 249 (412)
T ss_pred CceeeeechHHHHH----HHHHHHhCCCcEEEeecCCC
Confidence 98765555788754 35677889999999875444
No 243
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=20.19 E-value=4.4e+02 Score=26.52 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCCEEEEec
Q 008330 142 KAFQAVVASLGNNNVMVILDN 162 (570)
Q Consensus 142 ~~ld~vV~~a~~~Gl~VILD~ 162 (570)
+.+..++++++++|+.|.+..
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEE
Confidence 357789999999999998875
No 244
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=20.16 E-value=4.6e+02 Score=28.62 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHHHhcCCCEE
Q 008330 79 DMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVASLGNNNVMV 158 (570)
Q Consensus 79 ~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~a~~~Gl~V 158 (570)
.+-++.+++.|+| |+.+..+.+.++ +... +| . ..-.+....+|+.+++.|+.-
T Consensus 137 ~e~~~~l~~~GvN--RiSlGVQsf~~~------~lk~---lg--------R--------~h~~~~~~~a~~~~~~~g~~~ 189 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGVQSFNDE------VLKA---LG--------R--------IHDEEEAKEAVELARKAGFTS 189 (416)
T ss_pred HHHHHHHHHcCCC--EEEeccccCCHH------HHHH---hc--------C--------CCCHHHHHHHHHHHHHcCCCc
Confidence 5678888999999 887776655431 1111 11 0 112345678888899988874
Q ss_pred -EEecCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCC
Q 008330 159 -ILDNHISKPGWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGP 219 (570)
Q Consensus 159 -ILD~H~~~~~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~ 219 (570)
-+|+=-.-| ..+.+.|.+-++++.+-= -+.|-.|.|.-||...
T Consensus 190 in~DLIyglP----------------~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~ 233 (416)
T COG0635 190 INIDLIYGLP----------------GQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTK 233 (416)
T ss_pred EEEEeecCCC----------------CCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCch
Confidence 488643222 245777777776655532 3347789999999764
No 245
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=20.11 E-value=3.3e+02 Score=28.94 Aligned_cols=97 Identities=15% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHhcCCCEEEEecCCCCC---CccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcEEEEeccCCCCCCCCC
Q 008330 146 AVVASLGNNNVMVILDNHISKP---GWCCSNSDGNGFFGDQYFNPDLWIKGLTKMATIFNGVRNVVGMSLRNELRGPKQN 222 (570)
Q Consensus 146 ~vV~~a~~~Gl~VILD~H~~~~---~w~~~~~dgng~~~d~~~~~~~~~~~w~~iA~ryk~~p~Vig~dL~NEP~~~~~~ 222 (570)
.+|++|.++|++|+=-++.... .|+. .+..+.......+++-+.+||+.|+=. .+. ++.=|.+... ..
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~~------~lL~~~~~~~~~~a~kLv~lak~yGfD-Gw~-iN~E~~~~~~-~~ 120 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWLE------DFLKKDEDGSFPVADKLVEVAKYYGFD-GWL-INIETELGDA-EK 120 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHHH------HHhccCcccchHHHHHHHHHHHHhCCC-ceE-eeeeccCCcH-HH
Confidence 5788999999999877654321 1110 111110123456677778888877643 333 5555555211 13
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcEEEE-eCC
Q 008330 223 VKDWYRYMQLGAEAVHAANPEVLVIL-SGL 251 (570)
Q Consensus 223 ~~~W~~~~~~~~~aIr~~dp~~lIiV-eG~ 251 (570)
.+....+++++.++.++..|...|+- ++.
T Consensus 121 ~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~ 150 (339)
T cd06547 121 AKRLIAFLRYLKAKLHENVPGSLVIWYDSM 150 (339)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEecC
Confidence 56677788888888898898876655 444
No 246
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.04 E-value=2e+02 Score=29.66 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=42.9
Q ss_pred CCCCCChHHHHHHHHHHcCCcEEEecccccccccCccccchhhhhhhhccchhhccCcccCCCCCCCchHHHHHHHHHHH
Q 008330 71 EGLSKQPMDMLSKRVVDMGFNCVRLTWPLYLATNDSLASLTVRQSFQKLGLLEAIGGIQSNNPSIVDLPLIKAFQAVVAS 150 (570)
Q Consensus 71 ~Gl~~~~~~~~~~~i~~~GfN~VRlPi~~~~~~~~~~~n~tv~~s~~~lg~~~~~~g~~~~nP~~~~~t~l~~ld~vV~~ 150 (570)
+|......++.+|.-+++|+--|=|--.|+....+ ..++ ..+.+|. .-+.++|++
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~--------~~~d----------~~~~~~~-------~dl~elv~Y 81 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKD--------DDFD----------FTKPIPD-------FDLPELVDY 81 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--T--------TT------------TT-B-TT---------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecccccccccc--------cccc----------ccccCCc-------cCHHHHHHH
Confidence 35555567889999999999999885555432110 0000 0112222 248999999
Q ss_pred HhcCCCEEEEecCCCC
Q 008330 151 LGNNNVMVILDNHISK 166 (570)
Q Consensus 151 a~~~Gl~VILD~H~~~ 166 (570)
|+++|+.|+|=.|...
T Consensus 82 a~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 82 AKEKGVGIWLWYHSET 97 (273)
T ss_dssp HHHTT-EEEEEEECCH
T ss_pred HHHcCCCEEEEEeCCc
Confidence 9999999998777653
Done!