BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008331
(570 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 219/549 (39%), Positives = 310/549 (56%), Gaps = 50/549 (9%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y +F DAT L YDY+IVGGGTSGCPLAATLS+ VL+LE+G P PN+ +
Sbjct: 11 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTLPTAYPNLLTSD 70
Query: 86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
F L + +P ++F+S DG+ + R RVLGG S+INAG Y RA+ + G W
Sbjct: 71 GFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWD 130
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +Y+WVE + ++P WQS + LEAGVLP NGF+ DH GT+++G+ FD
Sbjct: 131 MDLVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDN 190
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
+G RH++ +LL DP L V + A V++I F+ TA V + D G H+A +
Sbjct: 191 NGTRHASDELLNKGDPNNLRVAVHASVEKIIFSSNSSGV-TAIGVIYKDSNGTPHQAFVR 249
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
G+ E+I+SAG IGSPQLL+LSGVGP + L I VV+ P VGQ + DNP N + +
Sbjct: 250 --GEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 307
Query: 323 SARPVEVSLVQVVGIT-RFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPET 381
P+E S V V+GIT F ++ S+ P ++ F N P+ P +
Sbjct: 308 PPNPIEPSTVTVLGITSNFYQCSFSSLPFSIPP---------FAFFPN----PTYPLPNS 354
Query: 382 VAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN----PSVTFNYFQEPE 437
V K+ GP S G + TL++D + P+V FNY+
Sbjct: 355 TFAH----------------FVNKVPGPLSYGSI---TLNSDSDVRVAPNVKFNYYSNST 395
Query: 438 DLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLEQ 496
DL CV GM+ I ++L+S AL ++ D+ + D++ + +P N + E
Sbjct: 396 DLAHCVSGMKKIGELLSSDALKPYKVEDLPGIDGFDILGIPLPENQT------DDAAFET 449
Query: 497 FCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRY 556
FCR+ V + WHYHGGC V V+D D++V G++ LRV+DGSTF SP ++PQ +MLGRY
Sbjct: 450 FCREAVASYWHYHGGCLVGEVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRY 509
Query: 557 MGLRILQDR 565
+G +ILQ+R
Sbjct: 510 VGSKILQER 518
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/544 (39%), Positives = 308/544 (56%), Gaps = 41/544 (7%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y +F DAT L YDY+IVGGGTSGCPLAATLS+ VL+LE+G P PN+
Sbjct: 11 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 70
Query: 86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
F L + +P ++F+SEDG+ N R RVLGG S+INAG Y RA S+ V W
Sbjct: 71 GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 130
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +YEWVE + ++P WQS + LEAGV P +GF+ DH GT+++G+ FD
Sbjct: 131 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 190
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
G RH+A +LL + L V + A V++I F+ TA V + D G H+A +
Sbjct: 191 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR 248
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
+ K E+I+SAG IG+PQLL+LSGVGP + L I VV+ P VGQ + DNP N + +
Sbjct: 249 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 306
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
P+E ++V V+GI+ D Y + S L T F + P + T
Sbjct: 307 PPNPIEPTIVTVLGISN-DFYQCSFSSLP--------FTTPPFGFFPSSSYP--LPNSTF 355
Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
A K+ GP S G L L+ + + +P+V FNY+ DL
Sbjct: 356 AH-----------------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 398
Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
CV GM+ I ++L++ AL ++ D+ E +++ IP P+ + + E FCR++
Sbjct: 399 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-GIPL---PKDQTDDA-AFETFCRES 453
Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
V + WHYHGGC V +V+D D++V G++ LRV+DGSTF +P ++PQ +MLGRY+G++I
Sbjct: 454 VASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 513
Query: 562 LQDR 565
LQ+R
Sbjct: 514 LQER 517
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/544 (39%), Positives = 308/544 (56%), Gaps = 41/544 (7%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y +F DAT L YDY+IVGGGTSGCPLAATLS+ VL+LE+G P PN+
Sbjct: 11 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 70
Query: 86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
F L + +P ++F+SEDG+ N R RVLGG S+INAG Y RA S+ V W
Sbjct: 71 GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 130
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +YEWVE + ++P WQS + LEAGV P +GF+ DH GT+++G+ FD
Sbjct: 131 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 190
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
G RH+A +LL + L V + A V++I F+ TA V + D G H+A +
Sbjct: 191 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR 248
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
+ K E+I+SAG IG+PQLL+LSGVGP + L I VV+ P VGQ + DNP N + +
Sbjct: 249 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 306
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
P+E ++V V+GI+ D Y + S L T F + P + T
Sbjct: 307 PPNPIEPTIVTVLGISN-DFYQCSFSSLP--------FTTPPFGFFPSSSYP--LPNSTF 355
Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
A K+ GP S G L L+ + + +P+V FNY+ DL
Sbjct: 356 AH-----------------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 398
Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
CV GM+ I ++L++ AL ++ D+ E +++ IP P+ + + E FCR++
Sbjct: 399 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-GIPL---PKDQTDDA-AFETFCRES 453
Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
V + WHYHGGC V +V+D D++V G++ LRV+DGSTF +P ++PQ +MLGRY+G++I
Sbjct: 454 VASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 513
Query: 562 LQDR 565
LQ+R
Sbjct: 514 LQER 517
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 139/599 (23%), Positives = 243/599 (40%), Gaps = 110/599 (18%)
Query: 42 YDYIIVGGGTSGCPLAATLSQN--ATVLLLEKGGSP-----YENPNITDTGNFATTLLDP 94
+DY++VG G +G +AA L+++ +VL+LE G S E P + G ++ D
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAP-LLAPGLVPNSIFDW 61
Query: 95 SPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVR---EVGWTESLVN 147
+ T+ +Q + + R R+LGG S ++ R S RY + GW +
Sbjct: 62 NYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQ 121
Query: 148 SSYEWVEKKVAHEPP------------------------MLQWQSAVRDGLLEAGVLPYN 183
++V K PP + + + + D +L
Sbjct: 122 ---QFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSE 178
Query: 184 GFTFDHIYGTK----VSGTIFD-EDGHRHSAADLLEYADPEK----LTVYLRAVVQRIKF 234
F F+ GT +S +I +G R S++ Y P + L+V + A V ++
Sbjct: 179 EFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLVN 236
Query: 235 TETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELR 294
+ T P CV + + GA K E++LSAG++G+P LL LSG+G N+L
Sbjct: 237 SGTTNGLPAFRCVEYAEQEGAPTTTVC---AKKEVVLSAGSVGTPILLQLSGIGDENDLS 293
Query: 295 KRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSL-A 353
GI +V+ P+VG+ +SD+ L +P+A V + FD+ +S ++
Sbjct: 294 SVGIDTIVNNPSVGRNLSDH----LLLPAAFFVNSN-------QTFDNIFRDSSEFNVDL 342
Query: 354 PSWAQGLTRDYSSFL-----------NKTDIPSLVTPETVAEAVETVNSYLNGTIRAGV- 401
W T ++ + N + + P + + N +
Sbjct: 343 DQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIP 402
Query: 402 ---------IVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDV 452
+ ++ P + G ++L T + D P + Y D+ +Q +++ +
Sbjct: 403 RPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRF 462
Query: 453 LNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGC 512
L+ +A + F V D + PT+ ++E + RD TI+H G
Sbjct: 463 LSGQAWADF------VIRPFDPRLRDPTD---------DAAIESYIRDNANTIFHPVGTA 507
Query: 513 QVDR------VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
+ VVD D KV GVDGLR++DGS +P + Q ++G+ I D+
Sbjct: 508 SMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKADQ 566
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
+NE++LS GAI +P+LLMLSG+GPA L + GI V+VD P VG+ + D+P + +
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
+P+ Q W G+ L++ D+ ++ +V
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
+ T+ T + + RS G +RLR+ D D P V YF +PE D+
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
V G+R ++ A++++ ++S P L+ + R T
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
T++H G ++ V +D + +V GV GLRV D S NP T MM+G
Sbjct: 462 NTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
+NE++LS GAI +P+LLMLSG+GPA L + GI V+VD P VG+ + D+P + +
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
+P+ Q W G+ L++ D+ ++ +V
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
+ T+ T + + RS G +RLR+ D D P V YF +PE D+
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
V G+R ++ A++++ ++S P L+ + R T
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
T++H G ++ V +D + +V GV GLRV D S NP T MM+G
Sbjct: 462 NTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 129/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
+NE++LS GAI +P+LLMLSG+GPA L + GI V+VD P VG+ + D+P + +
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
+P+ Q W G+ L++ D+ ++ +V
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
+ T+ T + + RS G +RLR+ D D P V YF +PE D+
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
V G+R ++ A++++ ++S P L+ + R T
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
T +H G ++ V +D + +V GV GLRV D S NP T MM+G
Sbjct: 462 NTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 142/600 (23%), Positives = 229/600 (38%), Gaps = 125/600 (20%)
Query: 40 SYYDYIIVGGGTSGCPLAATLSQN--ATVLLLEKG-GSPYENPNITDTGNFATTLLDPSP 96
S++D++IVGGGT+G +A L++N TVL++E G G+P + P IT T + A L +
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEIT-TPSSAMDLRNSKY 63
Query: 97 TSPSQQFISEDGVY------NARARVLGGGSVINAGFYT-----RASLRYVREVGWTESL 145
+ + Y N R + LGG S +N ++T +A+ E G E
Sbjct: 64 DWAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLN--YFTWVPGHKATFDQWEEFGGKEWT 121
Query: 146 VNSSYEWVEKKVA-HEPPMLQWQSAVRDGLLEAGVLPY-NGFTFDHI------------- 190
+ ++ K H+ P L S + + G +P + D +
Sbjct: 122 WDPLVPYLRKSATYHDDPRLY--SPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKS 179
Query: 191 YGTKVSGTIFD--EDGHRHS---------AADLLEYADPEKLTVYLRAVVQRIKFTETGR 239
G + I+D DG H + L + +T+ +R+ E R
Sbjct: 180 MGQPLIENIYDGEMDGLTHCCDTIYRGQRSGSFLFVKNKPNITIVPEVHSKRLIINEADR 239
Query: 240 AKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
T VT G LN E+ILS G +P+LLMLSG+GP EL + GI
Sbjct: 240 ---TCKGVTVVTAAGNE----LNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGIN 292
Query: 300 VVVDQPNVGQGMSDNP----------------------------MNALFVPSARPVEVSL 331
+VD +VGQ + D+P ++A + PV L
Sbjct: 293 TIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGL 352
Query: 332 VQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAV---ET 388
+++VG R D Y+E + A + G K L P + V T
Sbjct: 353 LELVGFPRIDKYLEKDAEYRKAKAANGG----------KDPFSPLGQPHFELDFVCMFGT 402
Query: 389 VNSYLNGTIRAG----VIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQ 444
+ T + G V+V+ + G + L + D P++ N+F D++ +
Sbjct: 403 AFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMRE 462
Query: 445 GMRTIIDVLNS----RALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRD 500
G+R D+L + L + YP +P + + + + D
Sbjct: 463 GIRFSYDLLFKGEGFKDLVESEYP-----------WEMPLD--------SDKEMHRAVLD 503
Query: 501 TVMTIWHYHGGCQVDR-----VVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
T +H G ++ + VVD KV G+ LRV D S P Q + +G
Sbjct: 504 RCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGE 563
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 130/539 (24%), Positives = 223/539 (41%), Gaps = 99/539 (18%)
Query: 43 DYIIVGGGTSGCPLAATLSQN--ATVLLLEKGGSPYENPNITDTGNFATTL---LDPSPT 97
D +IVGGG++G LAA LS++ + VLL+E G P +P+I + + D
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77
Query: 98 SPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEK-- 155
+ +Q + + AR R++GG S ++A Y R + W ++ + + W E
Sbjct: 78 TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQ--AWVDASGDRRWGWDELLP 135
Query: 156 --KVAHEPPMLQWQ-----------------SAVRDGLLEAGV---LP-YNGFTFDHIYG 192
+ + P+ S + +EAG LP G + G
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIG 195
Query: 193 TKVSGTIFDEDGHRHSAAD--LLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHCVTF 249
++ DG R +AAD L + K LT+ + V+R+K + V
Sbjct: 196 V-TPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--------GNQVRS 246
Query: 250 YDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQ 309
+ VG + A + ++I+L AGA+ SP LLM SG+GP + L G+ ++D P++G+
Sbjct: 247 LEVVGRQGSAEVF---ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGR 303
Query: 310 GMSDNPMNALFVPSAR-PVEVSLVQ---VVGITRFDSYIETASGLSLAPSWAQGLTRDYS 365
+ D+ + A + +AR PV S +Q + R DS+ TA+G
Sbjct: 304 NLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSF--TAAG--------------QP 347
Query: 366 SFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN 425
+ + +V+ A A + S L G I P S G +R+ + D
Sbjct: 348 EIVVGCGVAPIVSESFPAPAAGSAYSLLFG----------ITHPTSRGSVRISGPELGDR 397
Query: 426 PSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPR 485
+ Y Q D R + + + + L+ +R +EL+ N
Sbjct: 398 LIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRE-----RELLPGTPN-------- 444
Query: 486 HVVGASISLEQFCRDTVMTIWHYHGGCQV----DRVVDRDYKVLGVDGLRVIDGSTFYN 540
++ ++ F +V+T H G C++ D VVD + ++ +D L V+D S N
Sbjct: 445 ----SAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPN 499
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 142/599 (23%), Positives = 212/599 (35%), Gaps = 128/599 (21%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYEN---PNITDTGNFATTLLDPSPT 97
DYII GGG +G AA L++N +VL++E G YE+ P I D + D +
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESG--SYESDRGPIIEDLNAYG----DIFGS 74
Query: 98 SPSQQFISEDGVYNARARV------LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYE 151
S + + + N + + LGG +++N G +TR V W N +
Sbjct: 75 SVDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDS--WETVFGNEGWN 132
Query: 152 W-------VEKKVAHEPPMLQWQS-------------------------------AVRDG 173
W ++ + A P Q + A+
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192
Query: 174 LLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD---LLEYADPEKLTVYLRAVVQ 230
+ + GV F +G + ED R AA L Y P L V V
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRP-NLQVLTGQYVG 251
Query: 231 RIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPA 290
++ ++ G P A V F H G H N K+E++L+AG+ SP +L SG+G
Sbjct: 252 KVLLSQNG-TTPRAVGVEFGTHKGNTH----NVYAKHEVLLAAGSAVSPTILEYSGIGMK 306
Query: 291 NELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGL 350
+ L GI VVD P VG + D Q R S I +A
Sbjct: 307 SILEPLGIDTVVDLP-VGLNLQD-------------------QTTATVR--SRITSAGAG 344
Query: 351 SLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPR 410
+W + + K E AE + N T + E
Sbjct: 345 QGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALL-IQYENYRDWI 403
Query: 411 STGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRY-PDVSVQ 469
++ L D +F+ + DL+ +G I+D L F Y P +
Sbjct: 404 VNHNVAYSELFLDTAGVASFDVW----DLLPFTRGYVHILD--KDPYLHHFAYDPQYFLN 457
Query: 470 ELIDLMVNIPTNLRPRHV----------VGASISLEQFCRDTVMTIW----------HYH 509
EL DL+ R++ G +I + D ++ W +YH
Sbjct: 458 EL-DLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDADLSAWTEYIPYHFRPNYH 516
Query: 510 --GGC-----QVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
G C ++ VVD +V GV GLRVIDGS P T + M + M L+I
Sbjct: 517 GVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMALKI 571
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 135/567 (23%), Positives = 202/567 (35%), Gaps = 80/567 (14%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATT---------- 90
YDYIIVG G G A LS+ VLLLE+GG + T +AT+
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY 150
L + T + + +D A V GG SV A ++ + VGW S N +
Sbjct: 63 LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN--H 120
Query: 151 EWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHR---- 206
K++ P S LE + Y TI D ++
Sbjct: 121 APYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYN---QATINDNPNYKDHVF 177
Query: 207 -HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGAR-HRACLNNG 264
+SA D L + YL+ + R FT + +G + + L
Sbjct: 178 GYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPN 237
Query: 265 G------KNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPN------------ 306
G K +ILSAGA G+ ++L SG+GP + I+ V P
Sbjct: 238 GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDM-----IQTVQSNPTAAAALPPQNQWI 292
Query: 307 ---VGQGMSDNP-MNALFVPSARPVEVSLVQVVGITR---FDSYIETASGLSLAPSWAQG 359
VG DNP +N +F + + V R Y+ SG+ S
Sbjct: 293 NLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLN 352
Query: 360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYL--NGTIRAGVIVEKIMGPRSTGHLRL 417
R YS +D + TV +VNS L N + + V G +S G + +
Sbjct: 353 FWRAYSG----SDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGI 408
Query: 418 RTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV--SVQELIDLM 475
A +T + P D +Q + ++ + S PDV +++E +D
Sbjct: 409 DA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAY 466
Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
P + H V ++ TI G VVD + KV G + L ++D
Sbjct: 467 --DPATMNSNHWVSST------------TI----GSSPQSAVVDSNVKVFGTNNLFIVDA 508
Query: 536 STFYNSPGTNPQATCMMLGRYMGLRIL 562
+ P NPQ T M +IL
Sbjct: 509 GIIPHLPTGNPQGTLMSAAEQAAAKIL 535
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 135/567 (23%), Positives = 202/567 (35%), Gaps = 80/567 (14%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATT---------- 90
YDYIIVG G G A LS+ VLLLE+GG + T +AT+
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY 150
L + T + + +D A V GG SV A ++ + VGW S N +
Sbjct: 68 LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTN--H 125
Query: 151 EWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHR---- 206
K++ P S LE + Y TI D ++
Sbjct: 126 APYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYN---QATINDNPNYKDHVF 182
Query: 207 -HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGAR-HRACLNNG 264
+SA D L + YL+ + R FT + +G + + L
Sbjct: 183 GYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPN 242
Query: 265 G------KNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPN------------ 306
G K +ILSAGA G+ ++L SG+GP + I+ V P
Sbjct: 243 GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDM-----IQTVQSNPTAAAALPPQNQWI 297
Query: 307 ---VGQGMSDNP-MNALFVPSARPVEVSLVQVVGITR---FDSYIETASGLSLAPSWAQG 359
VG DNP +N +F + + V R Y+ SG+ S
Sbjct: 298 NLPVGMNAQDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLN 357
Query: 360 LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYL--NGTIRAGVIVEKIMGPRSTGHLRL 417
R YS +D + TV +VNS L N + + V G +S G + +
Sbjct: 358 FWRAYSG----SDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGI 413
Query: 418 RTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV--SVQELIDLM 475
A +T + P D +Q + ++ + S PDV +++E +D
Sbjct: 414 DA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQTLEEYVDAY 471
Query: 476 VNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDG 535
P + H V ++ TI G VVD + KV G + L ++D
Sbjct: 472 --DPATMNSNHWVSST------------TI----GSSPQSAVVDSNVKVFGTNNLFIVDA 513
Query: 536 STFYNSPGTNPQATCMMLGRYMGLRIL 562
+ P NPQ T M +IL
Sbjct: 514 GIIPHLPTGNPQGTLMSAAEQAAAKIL 540
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 130/321 (40%), Gaps = 62/321 (19%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKG------GSPYENPNITDTGNFATTLLD 93
YDYII GGG +G +AA L++N VL++EKG G+ E+PN F TT+
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQ-IFGTTVDQ 83
Query: 94 PSPTSPSQQFISEDGVYNARA-RVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEW 152
T P + + N +A + LGG ++IN +TR V+ W + + W
Sbjct: 84 NYLTVP----LINNRTNNIKAGKGLGGSTLINGDSWTRPD--KVQIDSWEKVFGMEGWNW 137
Query: 153 -------VEKKVAHEPPMLQW-----------------QSAVRDG------LLEA----- 177
+ + A P Q QS RD +++A
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197
Query: 178 ---GVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRI 232
GV F H G + DE+ R AA LL L + +V ++
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV 257
Query: 233 KFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANE 292
F +T P A V F G + K+E++L+AG+ SP +L SG+G +
Sbjct: 258 LFKQTASG-PQAVGVNF----GTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 293 LRKRGIRVVVDQPNVGQGMSD 313
L + + ++D P VG M D
Sbjct: 313 LDQANVTQLLDLP-VGINMQD 332
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 506 WHYHGGC-----QVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLR 560
WH C ++ VVD KV G GLRVIDGS P T + M + M L+
Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMALK 574
Query: 561 I 561
+
Sbjct: 575 V 575
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 495 EQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
+ FC +H GGC + + D +V G L V DGS S G NP T L
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 489
Query: 555 RYMGLRILQ 563
RI++
Sbjct: 490 ERNVERIIK 498
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 495 EQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
+ FC +H GGC + + D +V G L V DGS S G NP T L
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 489
Query: 555 RYMGLRILQ 563
RI++
Sbjct: 490 ERNVERIIK 498
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 495 EQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
+ FC +H GGC + + D +V G L V DGS S G NP T L
Sbjct: 435 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 487
Query: 555 RYMGLRILQ 563
RI++
Sbjct: 488 ERNVERIIK 496
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEK----GGSPY 76
YDYIIVG G G A L + N VL++EK GG+ Y
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAY 41
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 510 GGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
GGC + + D +V G L V DGS S G NP T L RI++
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIK 498
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 510 GGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
GGC + + D +V G L V DGS S G NP T L RI++
Sbjct: 447 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIK 500
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 510 GGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
GGC + + D +V G L V DGS S G NP T L RI++
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIK 498
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 495 EQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
+ FC +H GGC + + D +V G L V DGS S G +P T L
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITALA 489
Query: 555 RYMGLRILQ 563
RI++
Sbjct: 490 ERNVERIIK 498
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 510 GGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQ 563
GGC + + D +V G L V DGS S G NP T L RI++
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIK 498
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS 74
YD I+VGGG SG A L+ +LL +GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS 74
YD I+VGGG SG A L+ +LL +GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 293 LRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQ 333
LR+RG++++ D+P +G G N +N + S + V + L Q
Sbjct: 106 LRERGVQLLYDEPKLGTG--GNRINFMHPKSGKGVLIELTQ 144
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 42 YDYIIVGGGTSGCPLAATLSQN---ATVLLLEKG 72
YD IIVGGG G A L++N V +LEKG
Sbjct: 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 42 YDYIIVGGGTSGCPLAATLSQN---ATVLLLEKG 72
YD IIVGGG G A L++N V +LEKG
Sbjct: 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 495 EQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
+ FC +H GGC + + D +V G L V DGS S G P T L
Sbjct: 437 DDFC-------YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITALA 489
Query: 555 RYMGLRILQ 563
RI++
Sbjct: 490 ERNVERIIK 498
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 35 SAPLISYYDYIIVGGGTSGCPLAA-TLSQNATVLLLEKG 72
+AP YD +I+GGG +G A T + L+LEKG
Sbjct: 2 TAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,031,930
Number of Sequences: 62578
Number of extensions: 787056
Number of successful extensions: 2117
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2035
Number of HSP's gapped (non-prelim): 69
length of query: 570
length of database: 14,973,337
effective HSP length: 104
effective length of query: 466
effective length of database: 8,465,225
effective search space: 3944794850
effective search space used: 3944794850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)