BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008331
(570 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/532 (51%), Positives = 364/532 (68%), Gaps = 11/532 (2%)
Query: 40 SYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSP 99
S YDYI++GGGT+GCPLAATLSQN +VL+LE+GG P+ N N++ NF L D S +S
Sbjct: 61 SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120
Query: 100 SQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAH 159
SQ F+S DGVYNARARVLGGGS INAGFY+RA +V+ GW LV SY WVE+++ H
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180
Query: 160 EPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPE 219
+P + WQ A+RD LLE GV P+NGFT+DH+ GTK+ GTIFD G RH+AA+LL YA+P+
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240
Query: 220 KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP 279
KL V + A VQ+I F +G +P V F D G +H+A L+N +E+ILS+GAIGSP
Sbjct: 241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299
Query: 280 QLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITR 339
Q+LMLSG+GP EL++ I VV++ +VG+GM+DNPMN + VPS P+E SL+Q VGIT+
Sbjct: 300 QMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITK 359
Query: 340 FDSYIETASGLSLAPSWAQGLTRDYSSFLNKTD----IPSLVTPETVAEAVETVNSY-LN 394
Y+E ++G +P + + Y NK + IP+ +A T N Y L+
Sbjct: 360 MGVYVEASTGFGQSP---ESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLH 416
Query: 395 GTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLN 454
I+EK+ P S GHL L + DDNPSVTFNYF+ P DL RCV+ +R + V+
Sbjct: 417 EAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVT 476
Query: 455 S-RALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQ 513
S R L+ + +V +++ L V NLRP+ + + S+ QFC+DTV+TIWHYHGGC
Sbjct: 477 SNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQ-LNDTKSMAQFCKDTVVTIWHYHGGCL 535
Query: 514 VDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
V +VV + KVLGVD LRVIDGSTF SPGTNPQAT MM+GRYMG++IL++R
Sbjct: 536 VGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRER 587
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 261/556 (46%), Positives = 335/556 (60%), Gaps = 55/556 (9%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
+ F+ +AT YYDYIIVGGGT+GCPLAATLSQ+ VLLLE+GG PY PN+
Sbjct: 38 FMRFISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHD 97
Query: 86 NFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
F TTL D + SP+Q FISE+GV NAR RVLGG S INAGFY+RA ++ G W
Sbjct: 98 GFLTTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWD 157
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
S VN SYEWVE+ + P + WQ+A+RD LLE GV P+NGFT +H GTK+ G+ FD
Sbjct: 158 LSSVNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDR 217
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTET---GRAKPTAHCVTFYDHVGARHRA 259
G RHS+ADLL YA + V + A V+R+ + + +A V + D +G H A
Sbjct: 218 TGRRHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHA 277
Query: 260 CLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNAL 319
+ + G E+ILSAGA+GSPQLL LSG+GP + L GI V +DQP+VG + DNP N +
Sbjct: 278 LIRDRG--EVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGI 335
Query: 320 FVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTP 379
+ P+E SL+QVVG+T +++E AS + +A L +S F+ P L P
Sbjct: 336 SIVPPVPMENSLIQVVGVTEDGAFLEAASNVI---PFASPL---HSVFIRAPASP-LYVP 388
Query: 380 ETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDL 439
T I+EKI+GP S G LRL + D NP V FNYF +P+DL
Sbjct: 389 VTT-------------------IMEKILGPVSIGLLRLASTDVRINPVVRFNYFSDPQDL 429
Query: 440 VRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQ--- 496
RCV G R I ++L SRA+ D M+ R VGA + ++Q
Sbjct: 430 ERCVNGTRKIGEILRSRAMQ-------------DFMIREWFGNRRFRFVGAPLPVDQSND 476
Query: 497 -----FCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCM 551
FCR TV TIWHYHGG V +VVD D KV+GV+ LR++DGSTF SPGTNPQAT M
Sbjct: 477 LVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLM 536
Query: 552 MLGRYMGLRILQDRDR 567
MLGRYMGL++L++R R
Sbjct: 537 MLGRYMGLKMLRERMR 552
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 226/546 (41%), Positives = 319/546 (58%), Gaps = 44/546 (8%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y +FV DAT L YDYIIVGGGT+GCPLAATLS N +VL+LE+G P E PN+ +
Sbjct: 38 YLSFVYDATDPELEGSYDYIIVGGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISD 97
Query: 86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
F L + +P ++F+SEDG+ N R RVLGG S+INAG Y RA+ + + G W
Sbjct: 98 GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWD 157
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +YEWVE + EP WQ+ + LEAG+LP NGF+ DH+ GT+++G+ FD
Sbjct: 158 MDLVNQTYEWVEDTIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDN 217
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
+G RH++ +LL DP L V ++A V++I F+ + + TA V + D G H+A +
Sbjct: 218 NGTRHASDELLNKGDPNNLRVAVQAAVEKIIFS-SNTSGVTAIGVIYTDSNGTTHQAFVR 276
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
G+ E+ILSAG IGSPQLL+LSGVGP + L I VV P VGQ + DNP N + +
Sbjct: 277 --GEGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYIYDNPRNFINIL 334
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSL-APSWAQGLTRDYSSFLNKTDIPSLVTPET 381
P+E S V V+GIT D Y + S L P + SF T P + +T
Sbjct: 335 PPNPIEASTVTVLGITS-DFYQCSISSLPFDTPPF---------SFFPTTSYP--LPNQT 382
Query: 382 VAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLV 440
A IV K+ GP S G + L + D P+V FNY+ DL
Sbjct: 383 FAH-----------------IVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLS 425
Query: 441 RCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLEQFCR 499
CV GM+ + +VL++ AL ++ D+ + +++ + +P N + E FCR
Sbjct: 426 HCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIPLPENQT------DDAAFETFCR 479
Query: 500 DTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGL 559
++V + WHYHGGC V +V+D ++V G++ LRV+DGSTF ++P ++PQ +MLGRYMG+
Sbjct: 480 ESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGI 539
Query: 560 RILQDR 565
+ILQ+R
Sbjct: 540 QILQER 545
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 226/550 (41%), Positives = 310/550 (56%), Gaps = 42/550 (7%)
Query: 21 AEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPN 80
A Y FV DA L YDYIIVGGGT+GCPLAATLS N +VL+LE+G P E PN
Sbjct: 34 AHDFSYLEFVYDANDTELEGTYDYIIVGGGTAGCPLAATLSANYSVLVLERGTLPTEYPN 93
Query: 81 ITDTGNFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV 139
+ + F L + +P ++F+S DG+ N R RVLGG S+INAG Y RA+ + +
Sbjct: 94 LLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQT 153
Query: 140 G--WTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSG 197
G W LVN +Y+WVE + +P WQ+ LE G+LP NGF+ DH+ GT+++G
Sbjct: 154 GIEWDMDLVNKTYDWVEDTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRLTG 213
Query: 198 TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
+ FD +G RH++ +LL DP L V + A V++I F+ + + TA V + D G H
Sbjct: 214 STFDNNGTRHASDELLNKGDPNNLRVAVHAAVEKIIFS-SDSSGVTAIGVIYTDSNGTTH 272
Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMN 317
+A + G E+ILSAG IGSPQLL+LSGVG + L I VV P VGQ + DNP N
Sbjct: 273 QAFVR--GDGEVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNPRN 330
Query: 318 ALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLV 377
+ + P+E S V V+GIT D Y + S L + T + F N P+
Sbjct: 331 FINILPPNPIEASTVTVLGITS-DFYQCSISSLPFS-------TAPFGFFPN----PTYP 378
Query: 378 TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEP 436
P T IV K+ GP S G + L+ T D P+VTFNY+
Sbjct: 379 LPNTTFAH----------------IVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNT 422
Query: 437 EDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLE 495
DL CV GM+ I + L+S AL ++ D+ E D++ + +P N + E
Sbjct: 423 TDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGFDILGIPLPENQT------DDAAFE 476
Query: 496 QFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
FCR+ V + WHYHGGC V V+D D++V G++ LRV+DGSTF ++P ++PQ +MLGR
Sbjct: 477 TFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGR 536
Query: 556 YMGLRILQDR 565
YMG +ILQ+R
Sbjct: 537 YMGTKILQER 546
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 223/546 (40%), Positives = 310/546 (56%), Gaps = 44/546 (8%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y FV +A L YDYIIVGGGTSGCPLAATLS N +VL+LE+G E PN
Sbjct: 39 YLKFVYNAVDLELEGSYDYIIVGGGTSGCPLAATLSANYSVLVLERGTIATEYPNTLTVD 98
Query: 86 NFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVG--WT 142
FA L +P ++F+SEDG+ N R+R+LGG ++INAG Y RA+ + G W
Sbjct: 99 GFAYNLQQQDDGKTPVERFVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWD 158
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +YEWVE + ++P WQS LEAGV P NGF H GT+++G+ FD
Sbjct: 159 LDLVNEAYEWVEDAIVYKPSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDN 218
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
G RH++ +LL DP+ L V + A VQ+I F+ T + TA V + D G HRA ++
Sbjct: 219 SGTRHASDELLNKGDPDNLKVAVEAAVQKIIFS-TESSGLTAVGVVYTDSNGTSHRALVS 277
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
GK E+ILSAG +G+PQLL+LSGVGP + L I VV P VGQ ++DNP N + +
Sbjct: 278 --GKGEVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVASHPYVGQYVNDNPRNFINIL 335
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSL-APSWAQGLTRDYSSFLNKTDIPSLVTPET 381
P+E S V V+GIT D Y + S L P ++ T Y +P+ +T
Sbjct: 336 PPNPIEPSTVTVLGITS-DFYQCSLSSLPFDTPPFSLFPTTSYP-------LPN----QT 383
Query: 382 VAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLV 440
A IV K+ GP S G L L+ + + P+V FNY +P DL
Sbjct: 384 FAH-----------------IVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLT 426
Query: 441 RCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLM-VNIPTNLRPRHVVGASISLEQFCR 499
CV GM+ I L++ AL ++ D+ + +++ +P N + E+FCR
Sbjct: 427 HCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTPLPENQT------DDAAFEKFCR 480
Query: 500 DTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGL 559
DTV + WHYHGG V +V+D +++V G++ LRV+DGSTF +P ++PQ +MLGRY+G
Sbjct: 481 DTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGT 540
Query: 560 RILQDR 565
+I+Q+R
Sbjct: 541 KIVQER 546
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 222/550 (40%), Positives = 308/550 (56%), Gaps = 42/550 (7%)
Query: 21 AEKAPYYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPN 80
A Y FV +AT L YDYI++GGGTSGCPLAATLS+ VLLLE+G E PN
Sbjct: 33 AHDFSYLKFVYNATDTSLEGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTIATEYPN 92
Query: 81 ITDTGNFATTLLDPSP-TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV 139
FA L +P ++F+SEDG+ N RAR+LGG ++INAG Y RA++ + +
Sbjct: 93 TLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANISFYSQT 152
Query: 140 G--WTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSG 197
G W LVN +YEWVE + +P WQS + +G LEAG+LP NGF+ DH GT+++G
Sbjct: 153 GIEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTG 212
Query: 198 TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
+ FD +G RH+A +LL DP L V ++A V++I F+ + + +A V + D G H
Sbjct: 213 STFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFS-SNTSNLSAIGVIYTDSDGNSH 271
Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMN 317
+A + G E+I+SAG IG+PQLL+LSGVGP + L I VV P VGQ + +NP N
Sbjct: 272 QAFVR--GNGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNPRN 329
Query: 318 ALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLV 377
+ P+E S+V V+GI R D Y + S L + T +S F
Sbjct: 330 FINNFPPNPIEASVVTVLGI-RSDYYQVSLSSLPFS-------TPPFSLF---------- 371
Query: 378 TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEP 436
P T SY IV ++ GP S G + L + D P++ FNY+
Sbjct: 372 -PTT---------SYPLPNSTFAHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNS 421
Query: 437 EDLVRCVQGMRTIIDVLNSRALSKFRYPDV-SVQELIDLMVNIPTNLRPRHVVGASISLE 495
DL CV GM+ + D+L ++AL ++ DV + L V +P N S E
Sbjct: 422 TDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGFNYLGVPLPENQT------DDASFE 475
Query: 496 QFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGR 555
FC D V + WHYHGG V +V+D ++V+G+ LRV+D STF P ++PQ +MLGR
Sbjct: 476 TFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGR 535
Query: 556 YMGLRILQDR 565
Y+GL+ILQ+R
Sbjct: 536 YVGLQILQER 545
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 221/544 (40%), Positives = 307/544 (56%), Gaps = 41/544 (7%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y F DAT L YDY+IVGGGTSGCPLAATLS+ VL+LE+G P PN+
Sbjct: 38 YLRFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 97
Query: 86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
F L + +P ++F+SEDG+ N R RVLGG S+INAG Y RA S+ V W
Sbjct: 98 GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWD 157
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +YEWVE + +P WQS LEAGV P +GF+ DH GT+++G+ FD
Sbjct: 158 MDLVNKTYEWVEDTIVFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDN 217
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
G RH+A +LL + L V + A V++I F+ TA V + D G HRA +
Sbjct: 218 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHRAFVR 275
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
+ K E+I+SAG IG+PQLL+LSGVGP + L I VV+ P VGQ + DNP N + +
Sbjct: 276 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 333
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
P+E ++V V+GI+ D Y + S L T SF T P + T
Sbjct: 334 PPNPIEPTIVTVLGISN-DFYQCSFSSLP--------FTTPPFSFFPSTSYP--LPNSTF 382
Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
A K+ GP S G L L+ + + +P+V FNY+ P DL
Sbjct: 383 AH-----------------FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSH 425
Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
CV GM+ I ++L++ AL ++ D+ E +++ IP P+ + + E FCR++
Sbjct: 426 CVSGMKKIGELLSTDALKPYKVEDLPGIEGFNIL-GIPL---PKDQTDDA-AFETFCRES 480
Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
V + WHYHGGC V +V+D D++V G+D LRV+DGSTF +P ++PQ +MLGRY+G++I
Sbjct: 481 VASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 540
Query: 562 LQDR 565
LQ+R
Sbjct: 541 LQER 544
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/544 (40%), Positives = 309/544 (56%), Gaps = 41/544 (7%)
Query: 26 YYTFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTG 85
Y +F DAT L YDY+IVGGGTSGCPLAATLS+ VL+LE+G P PN+
Sbjct: 38 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTAD 97
Query: 86 NFATTLL-DPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--SLRYVREVGWT 142
F L + +P ++F+SEDG+ N R RVLGG S+INAG Y RA S+ V W
Sbjct: 98 GFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWD 157
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDE 202
LVN +YEWVE + ++P WQS + LEAGV P +GF+ DH GT+++G+ FD
Sbjct: 158 MDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDN 217
Query: 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
G RH+A +LL + L V + A V++I F+ TA V + D G H+A +
Sbjct: 218 KGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA--PGLTATGVIYRDSNGTPHQAFVR 275
Query: 263 NGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVP 322
+ K E+I+SAG IG+PQLL+LSGVGP + L I VV+ P VGQ + DNP N + +
Sbjct: 276 S--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINIL 333
Query: 323 SARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETV 382
P+E ++V V+GI+ D Y + S L T + F PS P
Sbjct: 334 PPNPIEPTIVTVLGISN-DFYQCSFSSLPFT-------TPPFGFF------PSASYPLP- 378
Query: 383 AEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR-TLDADDNPSVTFNYFQEPEDLVR 441
N T K+ GP S G L L+ + + +P+V FNY+ DL
Sbjct: 379 -----------NSTFAH--FASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 425
Query: 442 CVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDT 501
CV GM+ I ++L++ AL ++ D+ E +++ IP P+ + + E FCR++
Sbjct: 426 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL-GIPL---PKDQTDDA-AFETFCRES 480
Query: 502 VMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
V + WHYHGGC V +V+D D++V G++ LRV+DGSTF +P ++PQ +MLGRY+G++I
Sbjct: 481 VASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKI 540
Query: 562 LQDR 565
LQ+R
Sbjct: 541 LQER 544
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 156/565 (27%), Positives = 234/565 (41%), Gaps = 95/565 (16%)
Query: 38 LISYYDYIIVGGGTSGCPLAATLSQNATV-LLLEKGGSPYENPNITDTGNFATTLLDPSP 96
+ S +DYI+VGGG++GC LAA LS+N +V + L + G +P I FA P
Sbjct: 1 MTSGFDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPHT 60
Query: 97 ----TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVREV--GWTESLV 146
T P Q+ + + + R+LGGGS INA +TR R+ E GW+ V
Sbjct: 61 WDLLTEP-QKHANNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDV 119
Query: 147 NSSYEWVE------------------KKVAHEPPMLQWQSAVRDGLLEAGVLPYN-GFTF 187
+ E +A P + A E G LPYN F
Sbjct: 120 QKYFIRSEGNAVFSGTWHGTNGPLGVSNLAEPNPTSR---AFVQSCQEMG-LPYNPDFNG 175
Query: 188 DHIYGTKVSGTIFDEDGHRHSAADLLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHC 246
G + + +A L A K LTV RA+V +I F T RA +
Sbjct: 176 ASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVFNGT-RATGVQYI 234
Query: 247 VTFYDHVGARHRACLNNG-GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQP 305
LN EI+++AGAIG+P+L+MLSGVGPA LR+ GI VV D P
Sbjct: 235 AN----------GTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLP 284
Query: 306 NVGQGMSDN---------PMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSW 356
VG+ + D+ + F R + L + T F S ++ + W
Sbjct: 285 GVGENLQDHFGVDIVAELKTDESF-DKYRKLHWMLWAGLEYTMFRSGPVASNVVEGGAFW 343
Query: 357 ----AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRST 412
+ G+ FL + + VT + T+NSY ++ P+S
Sbjct: 344 YSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGASGITLNSY-------------VLRPKSR 390
Query: 413 GHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELI 472
G +RLR+ D NP V N+ +P DL +G+R ++ + +L K +++
Sbjct: 391 GTVRLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKH------IRKTC 444
Query: 473 DLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVD 528
PT R + R+ T +H C++ R VVD KV G++
Sbjct: 445 FFSGKQPTMQMYR----------DYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLE 494
Query: 529 GLRVIDGSTFYNSPGTNPQATCMML 553
G+R+ D S + G+N A +M+
Sbjct: 495 GIRICDSSVMPSLLGSNTNAATIMI 519
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 141/556 (25%), Positives = 223/556 (40%), Gaps = 69/556 (12%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGS---PYENPNITDTGNFATTLLDPSPT 97
DYII+G G++G LA LS+++ +V++LE GG+ P+ + +
Sbjct: 4 DYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 98 SPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS------LRYVREVGWTESLVNSSYE 151
S + ++ + R +V+GG S IN Y R + GW + V ++
Sbjct: 64 SEPEPHLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFK 123
Query: 152 WVEKKVAHEP-------PMLQWQSAVRDGLLEAGVL--PYNGFTF-DHIYGTKVSGTIFD 201
+E E P+ + V++ L A V GF D G+K G
Sbjct: 124 RMEHSHGGEDGWRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYNGSKQEGFGLM 183
Query: 202 ED----GHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARH 257
E G R SAA ++ V L R E GRA G R
Sbjct: 184 EQTTWRGRRWSAASAYLKPALKRPNVQLIRCFARKIVIENGRA------TGVEIERGGRI 237
Query: 258 RACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMN 317
N E+I+SA + SP+LLMLSG+GPA L+ GI V VD+P VGQ + D+
Sbjct: 238 EVVKAN---REVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEF 294
Query: 318 ALFVPSARPVEVS-----LVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTD 372
S +PV + Q V + ++ SGL ++ + + + + D
Sbjct: 295 YFQQISTKPVSLYSWLPWFWQGVAGAQ---WLFFKSGLGISNQFEACAFLRSAPGVKQPD 351
Query: 373 IPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNY 432
I P + + + + G + K S G + LR D +P + FNY
Sbjct: 352 IQYHFLPVAIRYDGKAAANTHGFQVHVGYNLSK-----SRGSVTLRASDPKADPVIRFNY 406
Query: 433 FQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASI 492
PED + +R ++ +A ++R P++ +P V
Sbjct: 407 MSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEI----------------QPGERVQTDE 450
Query: 493 SLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYKVLGVDGLRVIDGSTFYNSPGTNP 546
++ F R+ + + +H G C++ VVD + +V+GVDGLRV D S F + N
Sbjct: 451 EIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNL 510
Query: 547 QATCMMLGRYMGLRIL 562
A +M G IL
Sbjct: 511 NAPSIMTGEKAADHIL 526
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 143/562 (25%), Positives = 228/562 (40%), Gaps = 81/562 (14%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATT---------- 90
DY+IVG G++G +A LS++ +V+++E GGS + P I A
Sbjct: 4 DYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDF-GPFIQMPAALAWPMSMKRYNWGY 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS------LRYVREVGWTES 144
L +P P +++ + R +V+GG S IN Y R + GW +
Sbjct: 63 LSEPEPNLDNRRITA------PRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYA 116
Query: 145 LVNSSYEWVEKKVAHEP-------PMLQWQSAVRDGLLEAGVLP--YNGFTF-DHIYGTK 194
V ++ +E E P+ + V + L A + GF D G+K
Sbjct: 117 DVLPYFKRMEHSHGGEEGWRGTDGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDDYNGSK 176
Query: 195 VSGTIFDE----DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY 250
G E +G R SAA+ ++ V L R E GRA
Sbjct: 177 QEGFGLMEQTIHNGRRWSAANAYLKPALKRGNVTLVNGFARKVIIENGRAVGV------- 229
Query: 251 DHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQG 310
+ R R + E+I+SA + SP+LLMLSG+GPA L+ GI V D+P VG
Sbjct: 230 -EIERRGRVETVKANR-EVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGAN 287
Query: 311 MSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLS-LAPSWAQGLTRDYSSFLN 369
+ D+ S +PV + + + + +G L G + + +
Sbjct: 288 LQDHMEFYFQQVSTKPVSL-------YSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAF 340
Query: 370 KTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG---PRSTGHLRLRTLDADDNP 426
P L P+ + SY + +G +S G++ LR+ D D+P
Sbjct: 341 LRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKSRGNVTLRSADPHDDP 400
Query: 427 SVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRH 486
+ FNY PED + +R ++ +A FR P++ E NI T+ +
Sbjct: 401 VIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFRGPEIQPGE------NIETDEQ--- 451
Query: 487 VVGASISLEQFCRDTVMTIWHYHGGCQV-DR-----VVDRDYKVLGVDGLRVIDGSTFYN 540
++ F R+ + + +H G C++ DR VVD + +V+GV+GLRV D S F +
Sbjct: 452 -------IDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPH 504
Query: 541 SPGTNPQATCMMLGRYMGLRIL 562
N +M G IL
Sbjct: 505 VTYGNLNGPSIMTGEKAADHIL 526
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 144/561 (25%), Positives = 226/561 (40%), Gaps = 79/561 (14%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGS---PYEN-------PNITDTGNFATT 90
D++I+G G++G LA LS++ +V++LE GGS P+ P + N+
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGY- 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS------LRYVREVGWTES 144
L +P P +++ + R +V+GG S IN Y R + GW +
Sbjct: 63 LSEPEPNLNNRRITA------PRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYA 116
Query: 145 LVNSSYEWVEKKVAHEP-------PMLQWQSAVRDGLLEAGVLPYN--GFTFDHIY-GTK 194
V Y+ +E E P+ + V++ L A + GF Y G+K
Sbjct: 117 DVLPYYKRMEHSHGGEEGWRGTDGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYNGSK 176
Query: 195 VSGTIFDED----GHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY 250
G E G R SAA ++ V L R E GRA
Sbjct: 177 QEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVELIRCFARKIVIENGRA------TGVE 230
Query: 251 DHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQG 310
G R N E+I+SA + SP+LLMLSG+GPA L++ GI V VD+P VGQ
Sbjct: 231 IERGGRIEVVKAN---REVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQN 287
Query: 311 MSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNK 370
+ D+ S +PV + + F + A L G++ + S
Sbjct: 288 LQDHMEFYFQQVSTKPVSL----YSWLPWFWQGVAGAQWLFFKR--GLGISNQFESCAFL 341
Query: 371 TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG---PRSTGHLRLRTLDADDNPS 427
P + P+ + SY + +G +S G++ LR+ D +P
Sbjct: 342 RSAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGNVSLRSSDPKADPV 401
Query: 428 VTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHV 487
+ FNY PED + +R ++ +A +R P++ +P
Sbjct: 402 IRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEI----------------QPGEK 445
Query: 488 VGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGSTFYNS 541
V ++ F R+ + + +H G C++ VVD + +V+GVDGLRV D S F +
Sbjct: 446 VQTDEEIDGFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHI 505
Query: 542 PGTNPQATCMMLGRYMGLRIL 562
N A +M G IL
Sbjct: 506 TYGNLNAPSIMTGEKSADHIL 526
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 135/560 (24%), Positives = 233/560 (41%), Gaps = 76/560 (13%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTG-NFATTLLD----- 93
YD+I++GGG++G +A+ LS+ VLL+E GG I NF + +D
Sbjct: 65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124
Query: 94 -PSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV------GWTESLV 146
P P + E Y R +VLGG SV+N Y R + + GW + V
Sbjct: 125 EPEPMACLSSM--EQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDV 182
Query: 147 NSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYN--------------GFTFDHIYG 192
++ E + + ++ + + GLL G PYN GF+ + G
Sbjct: 183 LPFFKKSEDNLDLDEVGTEYHA--KGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNG 240
Query: 193 TKVSGTIFDE----DGHRHSAADLLEYADPEK----LTVYLRAVVQRIKFTETGRAKPTA 244
+G + + +G R+S+A + P + L + L +I +
Sbjct: 241 QNSTGFMIAQMTARNGIRYSSAR--AFLRPARMRNNLHILLNTTATKILIHPHTK---NV 295
Query: 245 HCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQ 304
V D G+ + + K E++LSAGA+ SP +L+LSGVGP +EL++ +R V +
Sbjct: 296 LGVEVSDQFGSTRKILV----KKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNL 351
Query: 305 PNVGQGMSDNP--MNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTR 362
P VG+ + ++ F+ A ++ + F + + +G+S L
Sbjct: 352 PGVGKNLHNHVTYFTNFFIDDADTAPLNWATAMEYLLFRDGLMSGTGIS---DVTAKLAT 408
Query: 363 DYSSFLNKTDIPSLVTPETVAEAVET--VNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTL 420
Y+ + D+ L +A T V L+ R+ I ++ PRS G + LR+
Sbjct: 409 RYADSPERPDL-QLYFGGYLASCARTGQVGELLSNNSRSIQIFPAVLNPRSRGFIGLRSA 467
Query: 421 DADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYP-DVSVQELIDLMVNIP 479
D + P + NY +D+ V+G++ +I + + L ++ D +V + +
Sbjct: 468 DPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEA----- 522
Query: 480 TNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVI 533
H G+ E R H G C++ VV+ + +V G+ GLRV+
Sbjct: 523 ------HAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIRGLRVM 576
Query: 534 DGSTFYNSPGTNPQATCMML 553
D S N A +M+
Sbjct: 577 DTSIMPKVSSGNTHAPAVMI 596
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 224/561 (39%), Gaps = 79/561 (14%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGS---PYEN-------PNITDTGNFATT 90
D++I+G G++G LA LS++ +V++LE GGS P+ P + N+
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGY- 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS------LRYVREVGWTES 144
L +P P +++ + R +V+GG S IN Y R + GW +
Sbjct: 63 LSEPEPNLNNRRITA------PRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYA 116
Query: 145 LVNSSYEWVEKKVAHEP-------PMLQWQSAVRDGLLEAGVL--PYNGFTFDHIY-GTK 194
V Y+ +E E P+ + V++ L A + GF Y G+K
Sbjct: 117 DVLPYYKRMEHSHGGEEGWRGTDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYNGSK 176
Query: 195 VSGTIFDED----GHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY 250
G E G R SAA ++ V L R E GRA
Sbjct: 177 QEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVELVRCFARKIVIENGRA------TGVE 230
Query: 251 DHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQG 310
G R N E+I+SA + SP+LLMLSG+GPA L++ GI V D+P VGQ
Sbjct: 231 IERGGRTEVVRAN---REVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQN 287
Query: 311 MSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNK 370
+ D+ S +PV + + F + A L G++ + S
Sbjct: 288 LQDHMEFYFQQVSTKPVSL----YSWLPWFWQGVAGAQWLFFKR--GLGISNQFESCAFL 341
Query: 371 TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG---PRSTGHLRLRTLDADDNPS 427
P + P+ + SY + +G +S G + LR+ D +P
Sbjct: 342 RSAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGDVTLRSSDPKADPV 401
Query: 428 VTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHV 487
+ FNY PED + +R ++ +A +R P++ +P
Sbjct: 402 IRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEI----------------QPGEK 445
Query: 488 VGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGSTFYNS 541
V ++ F R+ + + +H G C++ VVD + +V+GVDGLRV D S F +
Sbjct: 446 VRTDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHI 505
Query: 542 PGTNPQATCMMLGRYMGLRIL 562
N A +M G IL
Sbjct: 506 TYGNLNAPSIMTGEKAADHIL 526
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 228/561 (40%), Gaps = 79/561 (14%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFA----TTLLDPSP 96
D++I+G G++G +A LS++ +V+++E GGS P I + +L D
Sbjct: 5 DFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDI-GPLIQMPSALSIPLNMSLYDWGF 63
Query: 97 TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLR----YVRE--VGWTESLVNSSY 150
S + + + R +V+GG S IN Y R R + E GW + V +
Sbjct: 64 ASEPEPHLGGRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYF 123
Query: 151 EWVEKK-------VAHEPPMLQWQSAVRDGL----LEAGVLPYNGFTF-DHIYGTKVSGT 198
+ +E H P+ + + ++ L +EAG GF D G+K G
Sbjct: 124 KRMEDNDGGEDGWRGHGGPLHVQRGSRKNPLYGAFVEAGR--QAGFELTDDYNGSKQEGF 181
Query: 199 IFDED----GHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV 253
E G R SAA L+ A K ++ +R+ E RA +
Sbjct: 182 GPMEQTISGGRRWSAASAYLKPALKRKNVSLVKGFARRV-IIENQRA------------I 228
Query: 254 GAR---HRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQG 310
G H+ + E+I++A +I SP++LMLSG+GPA LR+ GI VV D+P VG+
Sbjct: 229 GVEIEAHKQIQVVKARREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRN 288
Query: 311 MSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNK 370
+ D+ + S +P+ ++ V + F + A L G T + +
Sbjct: 289 LQDHMELYIQQESTKPITLNSV----LNPFSKALIGAQWLFFKS--GLGATNHFEAAAFV 342
Query: 371 TDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGP---RSTGHLRLRTLDADDNPS 427
+ P+ + Y + +GP +S G + LR+ D P
Sbjct: 343 RSRAGVDYPDIQYHFIPAAVRYDGKAAAKSHGFQAHVGPMRSKSRGSVTLRSPDPKAKPV 402
Query: 428 VTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHV 487
+ FNY P+D +R ++ A FR ++S P
Sbjct: 403 IRFNYMSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEIS----------------PGSH 446
Query: 488 VGASISLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYKVLGVDGLRVIDGSTFYNS 541
V + L+ F RD + +H G C++ R VVD + +V+GVDGLRV D S F
Sbjct: 447 VQSDDDLDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRV 506
Query: 542 PGTNPQATCMMLGRYMGLRIL 562
N A +M G IL
Sbjct: 507 TNGNLNAPSIMTGEKASDHIL 527
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 136/565 (24%), Positives = 234/565 (41%), Gaps = 86/565 (15%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTG-NFATTLLDPSPTS 98
YD+I++GGG++G +A+ LS+ VLL+E GG I NF + +D +
Sbjct: 65 YDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124
Query: 99 PSQQFIS----EDGVYNARARVLGGGSVINAGFYTRASLRYVREV------GWTESLVNS 148
++ E Y R +VLGG SV+N Y R + + GW+ V
Sbjct: 125 EPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLP 184
Query: 149 SYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYN--------------GFTFDHIYGTK 194
++ E + + ++ + + GLL G PYN GF+ + G
Sbjct: 185 FFKKSEDNLELDAVGTEYHA--KGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNGQN 242
Query: 195 VSGTIFDE----DGHRHSAADLLEYADPEK----LTVYLRAVVQRIKFTETGRAKPTAHC 246
+G + + +G R+S+A + P + L + L V ++ G
Sbjct: 243 STGFMIAQMTARNGIRYSSAR--AFLRPARMRNNLHILLNTTVTKV-LIHPGTKNVVG-- 297
Query: 247 VTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPN 306
V D G+ + + K E+I+S GA+ SPQ+L+LSGVGP +L+K +R V P
Sbjct: 298 VEVSDQFGSMRKILV----KKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPG 353
Query: 307 VGQGMSDNP--MNALFVPSARPVEVSLVQVVGITRFDSYIETASGLS-----LAPSWAQG 359
VG+ + ++ F+ A ++ + F + + +G+S +A WA
Sbjct: 354 VGKNLHNHVAYFTNFFIDDADTAPLNWATAMEYLLFRDGLMSGTGISDVTAKMATRWA-- 411
Query: 360 LTRDYSSFLNKTDIPSLVT--PETVAEAVET--VNSYLNGTIRAGVIVEKIMGPRSTGHL 415
++ ++P L +A T V L+ RA I ++ P+S G++
Sbjct: 412 ---------DRPNLPDLQLYFGGYLASCARTGQVGELLSNNSRAIQIFPAVLNPKSRGYI 462
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYP-DVSVQELIDL 474
LR+ D D P + NY + D+ V+G++ I + + L ++ D +V + +
Sbjct: 463 TLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCE- 521
Query: 475 MVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVD 528
H + E R H G C++ VV+ + +V GV
Sbjct: 522 ----------SHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVR 571
Query: 529 GLRVIDGSTFYNSPGTNPQATCMML 553
GLRV+D S N A +M+
Sbjct: 572 GLRVMDTSIMPKVTAGNTHAPAVMI 596
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 142/570 (24%), Positives = 229/570 (40%), Gaps = 97/570 (17%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATT---------- 90
D++I+G G++G LA LS++ +VL++E GGS + P I A
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDF-GPFIQMPAALAWPMSMKRYNWGY 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY 150
L +P P +++ + R +V+GG S IN Y R + + E L S +
Sbjct: 63 LSEPEPNLNNRRITA------PRGKVIGGSSSINGMVYVRG---HAEDFNRWEELGASGW 113
Query: 151 EWVE-----KKVAHE------------PPMLQ---WQSAVRDGLLEAGVLPYNGFTFDHI 190
+ + K++ H P +Q + + + +EAG GF
Sbjct: 114 AYADVLPYFKRMEHSHGGEEGWRGTDGPLHVQRGGFTNPLFRAFIEAG--KQAGFETTED 171
Query: 191 Y-GTKVSG------TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPT 243
Y G+K G TIF G R SAA+ ++ V + + R E GRA
Sbjct: 172 YNGSKQEGFGLMEQTIFA--GRRWSAANAYLKPALKRDNVGIVYGLARRIVIENGRA--- 226
Query: 244 AHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303
G R N E+I+SA + SP+LLMLSG+GPA L++ GI V D
Sbjct: 227 ---TGVEIERGGRTEVVKAN---REVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKAD 280
Query: 304 QPNVGQGMSDNPMNALFVPSARPVEVS-----LVQVVGITRFDSYIETASGLSLAPSWAQ 358
+P VG + D+ S +PV + Q V + ++ + GL + +
Sbjct: 281 RPGVGANLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQ---WLLSKGGLGASNQFEA 337
Query: 359 GLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLR 418
+ L + DI P ++ + + G + K S G + LR
Sbjct: 338 CAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSK-----SRGSVTLR 392
Query: 419 TLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNI 478
+ D +P + FNY PED + +R ++ +A +R P++
Sbjct: 393 SPDPKADPVLRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDAYRGPEI------------ 440
Query: 479 PTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRV 532
+P V + ++ F R+ + + +H G C++ VVD +V+GVDGLRV
Sbjct: 441 ----QPGEGVQSDEQIDSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRV 496
Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRIL 562
D S F + N +M G IL
Sbjct: 497 ADSSIFPHVTYGNLNGPSIMTGEKAADHIL 526
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 139/574 (24%), Positives = 229/574 (39%), Gaps = 105/574 (18%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGS---PYEN-------PNITDTGNFATT 90
D++I+G G++G +A+ LS++ TV++LE GGS P+ P D N+
Sbjct: 4 DFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNWGY- 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS------LRYVREVGWTES 144
L +P P +++ + R +V+GG S IN Y R + GW +
Sbjct: 63 LSEPEPQLNNRRITA------PRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYA 116
Query: 145 LVNSSYEWVEKKVAHEP-------PMLQWQSAVRDGL----LEAGVLPYNGFTFDHIYGT 193
V ++ +E E P+ + R+ L +EAG T D+ G
Sbjct: 117 DVLPYFKRMEHSHGGEEGWRGTDGPLHVRRGDARNPLFHAFIEAGKQAGFEATEDYNGGK 176
Query: 194 KVSGTIFDED---GHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY 250
+ + ++ G R SAA ++ V L R E GRA
Sbjct: 177 QEGFGLMEQTTWMGRRWSAATAYLKPALKRPNVELIRCFARKVVIENGRATGVE------ 230
Query: 251 DHVGARHRACLNNGGK-------NEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303
+ GGK +E+I+SA + SP+LLMLSG+GP L++ GI V +D
Sbjct: 231 ----------IERGGKIEIVKANSEVIVSASSFNSPKLLMLSGIGPGQHLQEMGIEVKID 280
Query: 304 QPNVGQGMSDNPMNALFVPSARPVEVS------LVQVVGITRFDSYIETASGLSLAPSWA 357
+P VG + D+ S +PV + + +VG ++ SGL
Sbjct: 281 RPGVGANLQDHMEFYFQQTSLKPVSLYSWLPWYMQGIVGA----QWMFFKSGL------- 329
Query: 358 QGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG---PRSTGH 414
G + + + P + P+ + SY + +G +S G
Sbjct: 330 -GTSNQFEACAFLRSAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKSRGA 388
Query: 415 LRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDL 474
+ LR+ D +P + FNY PED + +R ++ +A +R P++
Sbjct: 389 VTLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDYRGPEI-------- 440
Query: 475 MVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYKVLGVD 528
+P V ++ F R+ + + +H G C++ VVD D +V+GV+
Sbjct: 441 --------QPGPDVQTDDQIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVE 492
Query: 529 GLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRIL 562
GLRV D S F + N +M G IL
Sbjct: 493 GLRVADSSIFPSLTYGNLNGPSIMTGEKAADHIL 526
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 138/569 (24%), Positives = 240/569 (42%), Gaps = 74/569 (13%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNAT--VLLLEKGGSPYE-NPNITDTGNFA----TTLLDP 94
YDYIIVG G++GC LA LS + + V LLE G P + NP I A + L+
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAG--PRDTNPLIHMPLGIALLSNSKKLNW 59
Query: 95 SPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--------------------SLR 134
+ + QQ ++E ++ R + LGG S INA Y R +
Sbjct: 60 AFQTAPQQHLNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAFA 119
Query: 135 YVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGV---LPYNG-FTFDHI 190
+++ + S+Y + ++A L+ + + ++AG+ + +NG F H
Sbjct: 120 LFKKLEHNQRFDKSNYHGTDGELAVSD--LKDLNPLSKSFVQAGMEAKISFNGDFNGAHQ 177
Query: 191 YGTKVSGTIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVT 248
G + + G R S+A L + D L + A ++ F + A V+
Sbjct: 178 EGVGFY-QVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKVLFEDR-----KAVGVS 231
Query: 249 FYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVG 308
+ + ++G E+ILS GA+ +PQLLMLSGVG A EL++ GI +V D P VG
Sbjct: 232 YIQKNMHQQVKTTDSG---EVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVG 288
Query: 309 QGMSDNPMNALFVP--SARPVEVSLVQV-VGITRFDSYIETASGLSLAPSWAQGLTRDYS 365
+ + D+ L S P+ V+ + G+ SYI G + G S
Sbjct: 289 KNLQDHLDITLMCAANSRTPIGVAFSFIPRGLVGLFSYIFKRKGFLTSNVAESGGFVKSS 348
Query: 366 SFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN 425
++ ++ P + + + T+ ++ P+S G + L++ + D+
Sbjct: 349 PERDRPNLQFHFLPTYLKDHGRKIAVGYGYTLHICDLL-----PKSRGRIGLKSANPMDD 403
Query: 426 PSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPR 485
P + NY +PED+ + G++ + ++ +++K + + P
Sbjct: 404 PLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAK----------------HFKREIVPG 447
Query: 486 HVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRVIDGSTFYNS 541
V + + R TI+H G C++ + VVD +V G+ +RV+D S N
Sbjct: 448 PAVTSDDEIVADIRSRAETIYHPVGTCRMGKDPASVVDPCLQVRGLRNIRVVDASIMPNL 507
Query: 542 PGTNPQATCMMLGRYMGLRILQDRDRISF 570
N A +M+ I++ D S
Sbjct: 508 VAGNTNAPTIMIAENAAEIIVRKVDMASL 536
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 156/571 (27%), Positives = 221/571 (38%), Gaps = 105/571 (18%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ--NATVLLLEKG------GSPYENPNITDTGNFATTLLD 93
Y +++VG G++GC LA+ L++ N VLLLE G GS I + L D
Sbjct: 43 YTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCD 102
Query: 94 PS-----PTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVRE--VGWT 142
T P Q + +Y R RV GG S +NA Y R R+ RE GW
Sbjct: 103 DKYNWYYHTEP-QPGMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWD 161
Query: 143 ESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNG-FTFDHIYGTKVSGTIFD 201
+ + K HE ++ DG L N + + +G F
Sbjct: 162 YA---HCLPYFRKAQRHELGANMYRGG--DGPLHVSRGKTNHPLHQAFLQAARQAGYPFT 216
Query: 202 ED------------------GHRHSAADLLEYADPEKLTVYLRAVVQ----RIKFTETGR 239
ED G R S A Y P LRA VQ R+ F T R
Sbjct: 217 EDMNGFQQEGFGWMDMTVHQGKRWSTA--CAYLHPVLSRPNLRAEVQTLVSRVLFEGT-R 273
Query: 240 AKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
A Y G RH+A ++ E+ILS GAI SPQLLMLSGVG A++LRK I
Sbjct: 274 AVGVE-----YIKDGQRHKAYVSR----EVILSGGAINSPQLLMLSGVGNADDLRKLDIP 324
Query: 300 VVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQ------VVGITRFDSYIETASGLSLA 353
VV P VGQ + D+ + +P+ + Q +G+ SY + L
Sbjct: 325 VVCHLPGVGQNLQDHLEVYVQQACTQPITLHSAQKPLRKVCIGLEWLWSYTGDGATAHLE 384
Query: 354 PSWAQGLTRDYSSF----LNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGP 409
G R + +PS V + GT+RA
Sbjct: 385 TG---GFIRSRPGVPHPDIQFHFLPSQVIDHGRKPTQQEAYQVHVGTMRA---------- 431
Query: 410 RSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQ 469
S G L+LR+ + D+P + NY D+ Q +R ++ AL+ FR +
Sbjct: 432 TSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKE---- 487
Query: 470 ELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYK 523
L+P V + ++ F R + +H C++ R VVD K
Sbjct: 488 ------------LQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTK 535
Query: 524 VLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
V+GV+ LRV+D S + N A +M+
Sbjct: 536 VIGVENLRVVDASIMPSVVSGNLNAPTVMIA 566
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 143/577 (24%), Positives = 227/577 (39%), Gaps = 111/577 (19%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATT---------- 90
D++I+G G++G LA LS++ +VL++E GGS + P I A
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDF-GPFIQMPAALAWPMSMKRYNWGY 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSY 150
L +P P +++ + R +V+GG S IN Y R + + E L S +
Sbjct: 63 LSEPEPNLNNRRITA------PRGKVIGGSSSINGMVYVRG---HAEDFNRWEELGASGW 113
Query: 151 EWVE-----KKVAHE------------PPMLQ---WQSAVRDGLLEAGVLPYNGF-TFDH 189
+ + K++ H P +Q + + + +EAG GF T D
Sbjct: 114 AYADVLPYFKRMEHSHGGEEGWRGTDGPLHVQRGGFTNPLFRAFIEAG--KQAGFETTDD 171
Query: 190 IYGTKVSG------TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPT 243
G+K G TIF G R SAA+ YL+ ++R G
Sbjct: 172 YNGSKQEGFGLMEQTIFS--GRRWSAAN-----------AYLKPALKR---KNVGMVYGL 215
Query: 244 AHCVTFYDHVGARHRACLNNGGK-------NEIILSAGAIGSPQLLMLSGVGPANELRKR 296
A + D G + GGK E+I+SA + SP+LLMLSG+GP L
Sbjct: 216 ARKIVIED--GRATGVEIERGGKVEVVKATREVIVSASSFNSPKLLMLSGIGPGQHLNDM 273
Query: 297 GIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVS-----LVQVVGITRFDSYIETASGLS 351
GI V D+P VG + D+ S +PV + Q V + ++ + GL
Sbjct: 274 GIAVKADRPGVGANLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQ---WLLSKGGLG 330
Query: 352 LAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRS 411
+ + + L + DI P ++ + + G + K S
Sbjct: 331 ASNQFEACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSK-----S 385
Query: 412 TGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQEL 471
G + LR+ D P + FNY PED + +R ++ A +R P++
Sbjct: 386 RGSVTLRSPDPKAEPVLRFNYMSHPEDWEKFRHCVRLTREIFGQTAFDAYRGPEI----- 440
Query: 472 IDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVL 525
+P V + ++ F R+ + + +H G C++ VVD +V+
Sbjct: 441 -----------QPGEGVQSDEQIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVI 489
Query: 526 GVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRIL 562
GVDGLRV D S F + N +M G IL
Sbjct: 490 GVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHIL 526
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 157/576 (27%), Positives = 235/576 (40%), Gaps = 105/576 (18%)
Query: 42 YDYIIVGGGTSGCPLAATLSQN--ATVLLLEKGGSPYE------------NPNITDTGNF 87
YDYII+G G++G LA L+++ TVLLLE GG Y P N+
Sbjct: 6 YDYIIIGAGSAGNVLATRLTEDRDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNW 65
Query: 88 ATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA-SLRYVREVGWTE--S 144
A DP P F++ + R + LGG S+IN Y R +L Y GW E
Sbjct: 66 AYET-DPEP------FMNNRRMECGRGKGLGGSSLINGMCYIRGNALDYD---GWAERKG 115
Query: 145 LVNSSY-------EWVEKKVA------------HEPPMLQWQSAVRDGLLEAGVLPYNGF 185
L N +Y E + A H + + + + ++EAGV
Sbjct: 116 LENWTYLDCLPYFRKAETRDAGANDYHGGDGPVHVTTSKRGVNPLFEAMVEAGVQAGYPR 175
Query: 186 TFDHIYGTKVSG-----TIFDEDGHRHSAA-DLLEYADPE-KLTVYLRAVVQRIKFTETG 238
T D + G + G +G R S A L+ A P LT+ A RI F+
Sbjct: 176 T-DDLNGYQQEGFGPMDRTVTANGRRASTARGYLDQARPRPNLTIVTYATTDRILFSGK- 233
Query: 239 RAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGI 298
A V + D +A + + E++L +GAI SPQ+L SGVGP LR I
Sbjct: 234 ----RAQGVVYLDG-----QAQITAHARREVLLCSGAIASPQILQRSGVGPGGWLRDLDI 284
Query: 299 RVVVDQPNVGQGMSDNPMNALFVPSARPVEV--SLV----QVVGITRFDSYIETASGLSL 352
VV+D P VGQ + D+ + PV + +L+ +GI ++ +G+
Sbjct: 285 PVVLDLPGVGQNLQDHLEMYMQYECKEPVSLYPALLLRNQPAIGI----EWMLKGTGIGA 340
Query: 353 APSWAQG---LTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGP 409
+ + G TRD + N I P VA N+ +A V M
Sbjct: 341 SNHFEAGGFIRTRDDDPWPN---IQYHFLP--VAINYNGTNAIKMHGFQAHV---GSMRS 392
Query: 410 RSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQ 469
S G ++LR+ D ++PS+ FNY E D +R +++ AL +FR ++S
Sbjct: 393 PSRGRVKLRSRDPREHPSILFNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELS-- 450
Query: 470 ELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD----RVVDRDYKVL 525
P + + ++ F R T +H C + VVD + +V
Sbjct: 451 --------------PGAELQSDAQIDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVH 496
Query: 526 GVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
G++GLRV+D S N A +ML + RI
Sbjct: 497 GLEGLRVVDASIMPRITTGNLNAPTIMLAEKIADRI 532
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 152/569 (26%), Positives = 230/569 (40%), Gaps = 85/569 (14%)
Query: 40 SYYDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPT 97
S YDYII+G G++G LAA L+++A TVLLLE GG Y T L
Sbjct: 5 SEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 64
Query: 98 SPSQQFISEDGVYN-----ARARVLGGGSVINAGFYTRASLR----YVREVG---W---- 141
+ + + E + N R + LGG S+IN Y R + + +E G W
Sbjct: 65 NWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLD 124
Query: 142 ---------TESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGF-TFDHIY 191
T + + Y E V+ P + + ++EAGV GF D +
Sbjct: 125 CLPYFRKAETRDIGPNDYHGGEGPVSVTKPKAG-NNPLFHAMVEAGV--QAGFPRTDDLN 181
Query: 192 GTKVSG-----TIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTA 244
G + G +G R S A L E LT+ A+ RI F E RA A
Sbjct: 182 GYQQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILF-EGKRAVGVA 240
Query: 245 HCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303
+ V D + AR R E++L GAI SPQ+L SGVGPA L K I VV D
Sbjct: 241 YLVGDSDTRIQARAR--------KEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHD 292
Query: 304 QPNVGQGMSDNPMNALFVPSARPVEV--SLVQVVGITRFDSYIETASGLSLAPSW-AQGL 360
P VGQ + D+ L +PV + SL ++ +G+ + + A G
Sbjct: 293 LPGVGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAKWMFLGTGIGASNQFEAGGF 352
Query: 361 TRDYSSF----LNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLR 416
R +F + +P + E G++R+ S G ++
Sbjct: 353 IRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRS----------PSRGRVQ 402
Query: 417 LRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMV 476
+++ D + PS+ FNY +D G+R +++ AL +R ++S
Sbjct: 403 VKSKDPREYPSILFNYMSSEQDWQEFRDGIRLTREIMQQPALDPYRGREIS--------- 453
Query: 477 NIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRV 532
P V + +L+QF R+ T +H C++ VVD +V G+ LRV
Sbjct: 454 -------PGIDVQSDEALDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRV 506
Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
+D S N A +M+ + +I
Sbjct: 507 VDASIMPIITTGNLNAPTIMIAEKIADKI 535
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 152/569 (26%), Positives = 230/569 (40%), Gaps = 85/569 (14%)
Query: 40 SYYDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPT 97
S YDYII+G G++G LAA L+++A TVLLLE GG Y T L
Sbjct: 5 SEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 64
Query: 98 SPSQQFISEDGVYN-----ARARVLGGGSVINAGFYTRASLR----YVREVG---W---- 141
+ + + E + N R + LGG S+IN Y R + + +E G W
Sbjct: 65 NWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLD 124
Query: 142 ---------TESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGF-TFDHIY 191
T + + Y E V+ P + + ++EAGV GF D +
Sbjct: 125 CLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAG-NNPLFHAMVEAGV--QAGFPRTDDLN 181
Query: 192 GTKVSG-----TIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTA 244
G + G +G R S A L E LT+ A+ RI F E RA A
Sbjct: 182 GYQQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILF-EGKRAVGVA 240
Query: 245 HCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303
+ V D + AR R E++L GAI SPQ+L SGVGPA L K I VV D
Sbjct: 241 YLVGDSDTRIQARAR--------KEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHD 292
Query: 304 QPNVGQGMSDNPMNALFVPSARPVEV--SLVQVVGITRFDSYIETASGLSLAPSW-AQGL 360
P VGQ + D+ L +PV + SL ++ +G+ + + A G
Sbjct: 293 LPGVGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGF 352
Query: 361 TRDYSSF----LNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLR 416
R +F + +P + E G++R+ S G ++
Sbjct: 353 IRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRS----------PSRGRVQ 402
Query: 417 LRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMV 476
+++ D + PS+ FNY +D G+R +++ AL +R ++S
Sbjct: 403 VKSKDPREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREIS--------- 453
Query: 477 NIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRV 532
P V + +L+QF R+ T +H C++ VVD +V G+ LRV
Sbjct: 454 -------PGIDVQSDEALDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRV 506
Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
+D S N A +M+ + +I
Sbjct: 507 VDASIMPIITTGNLNAPTIMIAEKIADKI 535
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 147/569 (25%), Positives = 232/569 (40%), Gaps = 91/569 (15%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYE------------NPNITDTGNF 87
YDYII+G G++G LAA L++ + +VLLLE GG Y P N+
Sbjct: 3 YDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 62
Query: 88 ATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS--------------- 132
A DP P +++ + R + LGG S+IN Y R +
Sbjct: 63 AYET-DPEP------HMNDRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWATMSGLED 115
Query: 133 ------LRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFT 186
L Y R+ T + + Y V+ P + + + ++EAGV T
Sbjct: 116 WSYLDCLPYFRKAE-TRDVGANDYHGASGPVSVTTPKMG-NNELFHAMVEAGVQAGYPRT 173
Query: 187 FDHIYGTKVSG------TIFDEDGHRHSAADLLEYADPEK-LTVYLRAVVQRIKFTETGR 239
D + G + G T+ + +A L+ A K LT+ A+ RI F + R
Sbjct: 174 -DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKSRKNLTIVTHALTDRILF-DGKR 231
Query: 240 AKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
A A+ + + + E++L AGAI SPQ+L SGVGP + L++ I
Sbjct: 232 AVGVAYF---------KGESAQTAKARREVLLCAGAIASPQILQRSGVGPKDLLQRLDIS 282
Query: 300 VVVDQPNVGQGMSDNPMNALFVPSARPVEV-SLVQVVGITRFDS-YIETASGLSLAPSW- 356
VV D P VG+ + D+ L PV + +Q + + ++ +G+ + +
Sbjct: 283 VVHDLPGVGENLQDHLEMYLQYACKEPVSLYPALQWFNQPKIGAEWLFNGTGIGASNQFE 342
Query: 357 AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLR 416
A G R F +I P VA N+ +A V M S G ++
Sbjct: 343 AGGFIRSRDEF-TWPNIQYHFLP--VAINYNGSNAVKEHGFQAHV---GSMRSLSRGRVQ 396
Query: 417 LRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMV 476
+R+ DA ++PS+ FNY +D +R +++ AL K+R ++S
Sbjct: 397 VRSKDAREHPSILFNYMSTEQDWQEFRDAIRITREIMAQPALDKYRGREIS--------- 447
Query: 477 NIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRV 532
P V L++F R T +H C++ VVD V G++GLRV
Sbjct: 448 -------PGLAVQTDEELDEFIRTHAETAFHPSCSCKMGEDDMSVVDGQGCVHGMEGLRV 500
Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
+D S N AT +M+ + RI
Sbjct: 501 VDASIMPQIITGNLNATTIMIAEKIADRI 529
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 135/566 (23%), Positives = 236/566 (41%), Gaps = 76/566 (13%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNAT--VLLLEKGGSPYE-NPNITDTGNFA----TTLLDP 94
YDYIIVG G++GC LA LS + + V LLE G P + NP I A + L+
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAG--PRDTNPLIHMPLGIALLSNSKKLNW 59
Query: 95 SPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRA--------------------SLR 134
+ + QQ ++ ++ R + LGG S INA Y R +L
Sbjct: 60 AFQTAPQQNLNGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYRALE 119
Query: 135 YVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTK 194
+ + + S + V+ ++A L++ + + ++AG+ F D G
Sbjct: 120 LFKRLECNQRFDKSEHHGVDGELAVSD--LKYINPLSKAFVQAGMEANINFNGD-FNGEY 176
Query: 195 VSGTIF----DEDGHRHSAADLLEYA--DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVT 248
G F ++G R S+A + L + A +I F + +
Sbjct: 177 QDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKILFEDRKAVGVS----- 231
Query: 249 FYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVG 308
Y H+ +GG E++LS GA+G+P LLMLSGVG A EL++ G+ +V D P VG
Sbjct: 232 -YIKKNMHHQVKTTSGG--EVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVG 288
Query: 309 QGMSDNPMNALFVP--SARPVEVSLVQV-VGITRFDSYIETASGLSLAPSWAQGLTRDYS 365
+ + D+ L S P+ V+L + G++ SY+ G + G S
Sbjct: 289 KNLQDHLDITLMCAANSREPIGVALSFIPRGVSGLFSYVFKREGFLTSNVAESGGFVKSS 348
Query: 366 SFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN 425
++ ++ P + + + T+ ++ P+S G + L++ +
Sbjct: 349 PDRDRPNLQFHFLPTYLKDHGRKIAGGYGYTLHICDLL-----PKSRGRIGLKSANPLQP 403
Query: 426 PSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSK-FRYPDVSVQELIDLMVNIPTNLRP 484
P + NY + ED+ + G++ +L + +++K F++ V P
Sbjct: 404 PLIDPNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKHEVV-----------------P 446
Query: 485 RHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRVIDGSTFYN 540
V + + R TI+H G C++ + VVD K+ G+ +RV+D S +
Sbjct: 447 GQAVKTDDEIIEDIRRRAETIYHPVGTCRMGKDPASVVDPCLKIRGLANIRVVDASIMPH 506
Query: 541 SPGTNPQATCMMLGRYMGLRILQDRD 566
N A +M+ I+++ D
Sbjct: 507 LVAGNTNAPTIMIAENAAEIIMRNLD 532
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 150/568 (26%), Positives = 221/568 (38%), Gaps = 101/568 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNAT--VLLLEKG------GSPYENPNITDTGNFATTLLD 93
Y Y++VG G++GC LA L+++ VLLLE G GS + I L D
Sbjct: 41 YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCD 100
Query: 94 PSPT----SPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVRE--VGWTE 143
+ Q+ + +Y R RV GG S +NA Y R R+ R+ GW
Sbjct: 101 DRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDY 160
Query: 144 SLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNG-FTFDHIYGTKVSGTIFDE 202
+ + K HE +++ A DG L N + T+ +G E
Sbjct: 161 A---HCLPYFRKAQGHELGASRYRGA--DGPLRVSRGKTNHPLHCAFLEATQQAGYPLTE 215
Query: 203 D------------------GHRHSAADLLEYADPEKLTVYLRA----VVQRIKFTETGRA 240
D G R SAA Y P L+A +V R+ F T RA
Sbjct: 216 DMNGFQQEGFGWMDMTIHEGKRWSAA--CAYLHPALSRTNLKAEAETLVSRVLFEGT-RA 272
Query: 241 KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRV 300
Y G HRA + E+ILS GAI SPQLLMLSG+G A++L+K GI V
Sbjct: 273 VGVE-----YVKNGQSHRAYASK----EVILSGGAINSPQLLMLSGIGNADDLKKLGIPV 323
Query: 301 VVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQ------VVGITRFDSYIETASGLSLAP 354
V P VGQ + D+ + RP+ + Q +G+ + + L
Sbjct: 324 VCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLET 383
Query: 355 SWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGH 414
G R + DI P V + + G M S G
Sbjct: 384 G---GFIRSQPG-VPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGP-----MRGTSVGW 434
Query: 415 LRLRTLDADDNPSVTFNYFQ---EPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQEL 471
L+LR+ + D+P + NY + ED CV+ R ++ AL+ FR +
Sbjct: 435 LKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTR---EIFAQEALAPFRGKE------ 485
Query: 472 IDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYKVL 525
L+P + + ++ F R + +H C++ + VVD +VL
Sbjct: 486 ----------LQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVL 535
Query: 526 GVDGLRVIDGSTFYNSPGTNPQATCMML 553
GV+ LRV+D S + N A +M+
Sbjct: 536 GVENLRVVDASIMPSMVSGNLNAPTIMI 563
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 155/576 (26%), Positives = 228/576 (39%), Gaps = 117/576 (20%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ--NATVLLLEKG------GSPYENPNITDTGNFATTLLD 93
Y +I+VG G++GC LA L++ N VLLLE G GS I L D
Sbjct: 46 YTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCD 105
Query: 94 PSPT----SPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVRE--VGWTE 143
+ +Q + +Y R RV GG S +NA Y R R+ R+ GW
Sbjct: 106 DKYNWYYHTEAQPGLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDY 165
Query: 144 SLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNG-FTFDHIYGTKVSGTIFDE 202
+ + K HE ++ DG L N + + +G F E
Sbjct: 166 A---HCLPYFRKAQKHELGANMYRGG--DGPLHVSRGKTNHPLHQAFLQAARQAGYPFTE 220
Query: 203 D------------------GHRHSAADLLEYADPEKLTVYLRAVVQ----RIKFTETGRA 240
D G R S A Y P LRA VQ R+ F T RA
Sbjct: 221 DMNGFQQEGFGWMDMTIHQGKRWSTAS--AYLRPALSRPNLRAEVQTLVSRVLFEGT-RA 277
Query: 241 KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRV 300
Y G H+A ++ E+ILS GAI SPQLLMLSGVG A++L+K GI V
Sbjct: 278 VGVE-----YIKDGQSHKAYVSR----EVILSGGAINSPQLLMLSGVGNADDLKKLGIPV 328
Query: 301 VVDQPNVGQGMSDN----PMNALFVP-----SARPVEVSLVQVVGITRF-----DSYIET 346
V P VGQ + D+ +A P + +P+ + + + RF +++ET
Sbjct: 329 VCHLPGVGQNLQDHLEIYIQHACTQPITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLET 388
Query: 347 ASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKI 406
+ P G+ F +PS V + GT+RA
Sbjct: 389 GGFIRSRP----GVPHPDIQF---HFLPSQVIDHGRKPTQQEAYQVHVGTMRA------- 434
Query: 407 MGPRSTGHLRLRTLDADDNPSVTFNYFQ---EPEDLVRCVQGMRTIIDVLNSRALSKFRY 463
S G L+LR+ + D+P + NY + ED +CV+ R ++ A + FR
Sbjct: 435 ---TSVGWLKLRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTR---EIFAQEAFAPFRG 488
Query: 464 PDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR------V 517
+ L+P V + ++ F R + +H C++ + V
Sbjct: 489 KE----------------LQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAV 532
Query: 518 VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMML 553
VD+ +V+GV+ LRVID S + N A +M+
Sbjct: 533 VDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMI 568
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 149/585 (25%), Positives = 226/585 (38%), Gaps = 108/585 (18%)
Query: 38 LISYYDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPS 95
+ +YDYIIVG G++GC LA LS++ +VLLLE GGS + + T L P
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGS-----DKSIFIQMPTALSYPM 55
Query: 96 PTSP-SQQFISE-----DG--VYNARARVLGGGSVINAGFYTR----------------- 130
+ + QF ++ DG ++ R +VLGG S IN Y R
Sbjct: 56 NSEKYAWQFETDAEADLDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGW 115
Query: 131 ---ASLRYVREVGWTESLVNSSYEW------VEKKVAHEPPMLQWQSAVRDGLLEAG--- 178
A L Y R E+ ++ E+ + ++ + A D EAG
Sbjct: 116 NYQACLPYFRRA---ENWIDGEDEYRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPE 172
Query: 179 VLPYNGFT---FDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT 235
YNG+ F ++ T +G S A L + VVQRI
Sbjct: 173 TSDYNGYQQEGFGPMHMTVKNGVRAST-----SNAYLSRAKKRSNFKLIKGVVVQRILLE 227
Query: 236 ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRK 295
E A V F + R C KNE+I SAG+IGS QLL LSG+GP L K
Sbjct: 228 EK-----RAVGVEF--ELAGELRTCF---AKNEVISSAGSIGSVQLLQLSGIGPKTVLEK 277
Query: 296 RGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVS------LVQVVGITRFDSYIETASG 349
G+ V P VGQ + D+ +P+ ++ ++G +I T G
Sbjct: 278 AGVTPVHHLPGVGQNLQDHLEVYFQYHCQKPITLNGKLDWFSKGLIGA----EWILTRKG 333
Query: 350 LSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG- 408
L G T + S L P + Y G + +G
Sbjct: 334 L--------GATNHFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGP 385
Query: 409 --PRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV 466
P S G + + + + D P + FNY D +R ++L A+ +FR
Sbjct: 386 NKPESRGRVEIVSANPSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFR---- 441
Query: 467 SVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDR 520
E I +N+ T+ ++Q+ ++ V + +H C++ V+D
Sbjct: 442 --GEEIQPGINVATD----------AEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDE 489
Query: 521 DYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
+ +V G+ LRV+D S F P N A +M+ IL +
Sbjct: 490 ECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLILHKQ 534
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 149/585 (25%), Positives = 226/585 (38%), Gaps = 108/585 (18%)
Query: 38 LISYYDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPS 95
+ +YDYIIVG G++GC LA LS++ +VLLLE GGS + + T L P
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGS-----DKSIFIQMPTALSYPM 55
Query: 96 PTSP-SQQFISE-----DG--VYNARARVLGGGSVINAGFYTR----------------- 130
+ + QF ++ DG ++ R +VLGG S IN Y R
Sbjct: 56 NSEKYAWQFETDAEADLDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGW 115
Query: 131 ---ASLRYVREVGWTESLVNSSYEW------VEKKVAHEPPMLQWQSAVRDGLLEAG--- 178
A L Y R E+ ++ E+ + ++ + A D EAG
Sbjct: 116 NYQACLPYFRRA---ENWIDGEDEYRGGDGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPE 172
Query: 179 VLPYNGFT---FDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFT 235
YNG+ F ++ T +G S A L + VVQRI
Sbjct: 173 TSDYNGYQQEGFGPMHMTVKNGVRAST-----SNAYLSRAKKRSNFKLIKGVVVQRILLE 227
Query: 236 ETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRK 295
E A V F + R C KNE+I SAG+IGS QLL LSG+GP L K
Sbjct: 228 EK-----RAVGVEF--ELAGELRTCF---AKNEVISSAGSIGSVQLLQLSGIGPKTVLEK 277
Query: 296 RGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVS------LVQVVGITRFDSYIETASG 349
G+ V P VGQ + D+ +P+ ++ ++G +I T G
Sbjct: 278 AGVTPVYHLPGVGQNLQDHLEVYFQYHCQKPITLNGKLDWFSKGLIGT----EWILTRKG 333
Query: 350 LSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG- 408
L G T + S L P + Y G + +G
Sbjct: 334 L--------GATNHFESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGP 385
Query: 409 --PRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV 466
P S G + + + + D P + FNY D +R ++L A+ +FR
Sbjct: 386 NKPESRGRVEIVSANPLDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFR---- 441
Query: 467 SVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDR 520
E I +N+ T+ ++Q+ ++ V + +H C++ V+D
Sbjct: 442 --GEEIQPGINVATD----------AEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDE 489
Query: 521 DYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDR 565
+ +V G+ LRV+D S F P N A +M+ IL +
Sbjct: 490 ECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADLILHKQ 534
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 150/569 (26%), Positives = 228/569 (40%), Gaps = 85/569 (14%)
Query: 40 SYYDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTLLDPSPT 97
S YDYII+G G++G LAA L+++A TVLLLE GG Y T L
Sbjct: 5 SEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRY 64
Query: 98 SPSQQFISEDGVYN-----ARARVLGGGSVINAGFYTRASLR----YVREVG---W---- 141
+ + + E + N R + LGG S+IN Y R + + +E G W
Sbjct: 65 NWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKEPGLEDWSYLD 124
Query: 142 ---------TESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGF-TFDHIY 191
T + + Y E V+ P + + ++EAGV GF D +
Sbjct: 125 CLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAG-NNPLFHAMVEAGV--QAGFPRTDDLN 181
Query: 192 GTKVSG-----TIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTA 244
G + G G R S A L E + L++ A+ RI F E RA A
Sbjct: 182 GYQQEGFGPMDRTVTPKGRRASTARGYLDEAKKRDTLSIVTHALTDRILF-EGKRAVGVA 240
Query: 245 HCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303
+ V D + R R E++L GAI SPQ+L SGVGPA L K I VV D
Sbjct: 241 YLVGDSDTRIEVRAR--------KEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHD 292
Query: 304 QPNVGQGMSDNPMNALFVPSARPVEV--SLVQVVGITRFDSYIETASGLSLAPSW-AQGL 360
P VGQ + D+ L +PV + SL ++ +G+ + + A G
Sbjct: 293 LPGVGQNLQDHLEMYLQYACTQPVSLYPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGF 352
Query: 361 TRDYSSF----LNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLR 416
R +F + +P + E G++R+ S G +
Sbjct: 353 IRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRS----------PSRGRVH 402
Query: 417 LRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMV 476
+++ D + PS+ FNY +D G+R +++ AL +R ++S
Sbjct: 403 VKSKDPREYPSILFNYMASDQDWQEFRDGIRLTREIMQQPALDPYRGREIS--------- 453
Query: 477 NIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRV 532
P V + +L+QF R+ T +H C++ VVD +V G+ LRV
Sbjct: 454 -------PGIDVQSDEALDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGMQNLRV 506
Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
+D S N A +M+ + +I
Sbjct: 507 VDASIMPIITTGNLNAPTIMIAEKIADKI 535
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 137/563 (24%), Positives = 224/563 (39%), Gaps = 83/563 (14%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTL----LDPSP 96
D++I+G G++G LA LS+ +V+++E GGS + P I A + +
Sbjct: 4 DFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDF-GPFIQMPAALAWPMSMKRYNWGY 62
Query: 97 TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVE-- 154
S + ++ + R +V+GG S IN Y R + + E L S + + +
Sbjct: 63 LSEPEANLNNRRITAPRGKVIGGSSSINGMVYVRG---HAEDFNRWEELGASGWAYADVL 119
Query: 155 ---KKVAH-----------EPPMLQWQSAVRDGLLEAGVL--PYNGFTFDHIY-GTKVSG 197
K++ H + P+ + + L +A V GF Y G+K G
Sbjct: 120 PYFKRMEHSHGGEEGWRGTDGPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQEG 179
Query: 198 ------TIFDEDGHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY 250
TIF G R SAA+ L+ A + + QRI E GRA
Sbjct: 180 FGLMEQTIFG--GRRWSAANAYLKPALKRDNVKIVYGLAQRI-VIEDGRATGVEIERNGR 236
Query: 251 DHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQG 310
V +R E+I+SA + SP+LLMLSG+GP L+ GI V D+P VG
Sbjct: 237 IEVVKANR---------EVIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRPGVGAN 287
Query: 311 MSDNPMNALFVPSARPVEVS-----LVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYS 365
+ D+ S +PV + Q V + ++ + GL + + +
Sbjct: 288 LQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQ---WLLSRGGLGASNQFEACAFLRSA 344
Query: 366 SFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDN 425
L + DI P ++ + + G + K S G + LR+ D +
Sbjct: 345 PGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSK-----SRGSVSLRSADPKAD 399
Query: 426 PSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPR 485
P + FNY ED + +R ++ A +R P++ +P
Sbjct: 400 PVLRFNYMSHAEDWEKFRHCVRLTREIFGQSAFHDYRGPEI----------------QPG 443
Query: 486 HVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGSTFY 539
V + ++ F R+ + + +H G C++ VVD +V+G+DGLRV D S F
Sbjct: 444 EGVQSDEEIDAFLREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFP 503
Query: 540 NSPGTNPQATCMMLGRYMGLRIL 562
+ N +M G IL
Sbjct: 504 HVTYGNLNGPSIMTGEKAADHIL 526
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 134/563 (23%), Positives = 211/563 (37%), Gaps = 78/563 (13%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNAT--VLLLEKGGSP----YENPNITDTGNFATTLLDPS 95
YDYIIVG G++GC LA LS + +LLLE GGS + P +
Sbjct: 5 YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYAWQF 64
Query: 96 PTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNS-SYEWVE 154
T P S ++ R RVLGG S IN Y R E W E SY+
Sbjct: 65 ETQPEAGLDSRS-LHCPRGRVLGGSSSINGMVYVRGHACDYDE--WVEQGAEGWSYQECL 121
Query: 155 KKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSG-------TIFDEDGHRH 207
+ + R G G N + +Y + D +G++
Sbjct: 122 PYFRRAESWIHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAGYPKTDDYNGYQQ 181
Query: 208 SAADLLEYADPEKL-----TVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLN 262
+ + + YLR ++R T + +G +
Sbjct: 182 EGFGPMHMTVDKGIRASTSNAYLRRAMKRSNLTVRKGVVTRKVLIKNKQAIGVE----IE 237
Query: 263 NGGK-------NEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNP 315
GGK E++LSAG++GSPQLL LSG+GP L + GI V D P VG+ + D+
Sbjct: 238 VGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHL 297
Query: 316 MNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQGLTRDYSSFLNKT 371
+P ++L +G+ +I GL G T + S
Sbjct: 298 EVYFQYACHQP--ITLNSKLGLISKGLIGTRWILQKDGL--------GATNHFESCAFIR 347
Query: 372 DIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMG---PRSTGHLRLRTLDADDNPSV 428
L P + Y G + +G P+S G + + + D P++
Sbjct: 348 SRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPQSRGRIWITSADPHQKPNI 407
Query: 429 TFNYF---QEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPR 485
FNY Q+ +D C+ R ++L A+ +R ++ +P
Sbjct: 408 EFNYISTEQDKQDWRDCI---RLTREILAQPAMDDYRGEEI----------------QPG 448
Query: 486 HVVGASISLEQFCRDTVMTIWHYHGGCQVDR------VVDRDYKVLGVDGLRVIDGSTFY 539
+ + +++ + R V + +H C++ V+++D +V G+D LRVID S F
Sbjct: 449 ADITSDEAMDAWVRQNVESAYHPSCTCKMGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFP 508
Query: 540 NSPGTNPQATCMMLGRYMGLRIL 562
P N A +M+ IL
Sbjct: 509 TIPNGNLNAPTIMVAEKAADAIL 531
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 138/566 (24%), Positives = 223/566 (39%), Gaps = 89/566 (15%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATTL----LDPSP 96
D++I+G G++G +A LS++ +V+++E G P P I + + D
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYG-VPDVGPLIQMPAALSFPMNMETYDWGF 62
Query: 97 TSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV------GWTESLVNSSY 150
++ + I + R +VLGG S IN Y R R GW + V +
Sbjct: 63 STEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADVLPYF 122
Query: 151 EWVEKKVAHEPPM------LQWQSAVRD-----GLLEAGVLPYNGFTFDHIY-GTKVSG- 197
+ +E + L Q RD +EAG GF Y G K G
Sbjct: 123 KRMENSSGGQEGWRGTNGPLYIQRGKRDNPLFHAFVEAG--HEAGFEVTEDYNGEKQEGF 180
Query: 198 -----TIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH 252
TI +G R SAA+ ++ V L + R E RA V
Sbjct: 181 GPMEQTI--HNGRRWSAANAYLKPALKRPNVKLVKGLARKIVLEGKRA------VGVEIE 232
Query: 253 VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMS 312
G R+ + E+I++A +I SP+LLMLSG+GPA +L++ GI VV D+P VGQ +
Sbjct: 233 AG---RSFSTIRARREVIIAASSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQ 289
Query: 313 DNPMNALFVPSARPVEVSLVQVVG--ITRFDSYIETASGLSLAPSW-----AQGLTRDYS 365
D+ +EV + Q IT + S + S + W G T +
Sbjct: 290 DH------------LEVYIQQECTQPITLY-SKLNLFSKAKIGAEWLFFKTGDGATNHFE 336
Query: 366 SFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGP---RSTGHLRLRTLDA 422
S + P+ + Y + +GP +S G + LR+ +
Sbjct: 337 SAAFLRSKAGVEYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANP 396
Query: 423 DDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNL 482
+ P + FNY +D +R ++ A + +R ++
Sbjct: 397 REKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFNPYRGAEI---------------- 440
Query: 483 RPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGS 536
+P V + ++ F ++ V + +H G C++ VVD + +V+GV+GLRV D S
Sbjct: 441 QPGAHVQSDDEIDNFIKEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSS 500
Query: 537 TFYNSPGTNPQATCMMLGRYMGLRIL 562
F N +M+G IL
Sbjct: 501 IFPRITNGNLNGPSIMVGEKASDHIL 526
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 146/569 (25%), Positives = 232/569 (40%), Gaps = 91/569 (15%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYE------------NPNITDTGNF 87
YDYII+G G++G LA L++ + +VLLLE GG Y P N+
Sbjct: 3 YDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 62
Query: 88 ATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS--------------- 132
A DP P +++ R + LGG S+IN Y R +
Sbjct: 63 AYET-DPEPHMNNRRMEC------GRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLED 115
Query: 133 ------LRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFT 186
L Y R+ T + ++ Y V+ P + + + ++EAGV T
Sbjct: 116 WSYLDCLPYFRKAE-TRDVGSNDYHGATGPVSVATPKMG-NNELFHAMVEAGVQAGYPRT 173
Query: 187 FDHIYGTKVSG------TIFDEDGHRHSAADLLEYADPEK-LTVYLRAVVQRIKFTETGR 239
D + G + G T+ + +A L+ A K LT+ A+ +I F E R
Sbjct: 174 -DDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKGRKNLTIVTHALTDKILF-EGKR 231
Query: 240 AKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIR 299
A A+ + + + E++L AGAI SPQ+L SGVGP + L+ I
Sbjct: 232 AVGVAYF---------KGESPQTVQARREVLLCAGAIASPQILQRSGVGPKDLLQGLDIP 282
Query: 300 VVVDQPNVGQGMSDNPMNALFVPSARPVEV-SLVQVVGITRFDS-YIETASGLSLAPSW- 356
VV D P VG+ + D+ L PV + +Q + + ++ + +G+ + +
Sbjct: 283 VVHDLPGVGENLQDHLEMYLQYACKEPVSLYPALQWFNQPKIGAEWLFSGTGIGASNQFE 342
Query: 357 AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHLR 416
A G R F +I P VA N+ +A V M S G ++
Sbjct: 343 AGGFIRSRDEFA-WPNIQYHFLP--VAINYNGSNAVKEHGFQAHV---GSMRSLSRGRVQ 396
Query: 417 LRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMV 476
+R+ DA ++PS+ FNY +D +R +++ AL K+R ++S
Sbjct: 397 VRSKDAREHPSILFNYMSTEQDWQEFRDAIRITREIMAQPALDKYRGREIS--------- 447
Query: 477 NIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDGLRV 532
P V L++F R T +H C++ VVD +V G++GLRV
Sbjct: 448 -------PGLEVQTDEELDEFIRTHAETAFHPSCSCKMGEDEMAVVDGQGRVHGMEGLRV 500
Query: 533 IDGSTFYNSPGTNPQATCMMLGRYMGLRI 561
+D S N AT +M+ + RI
Sbjct: 501 VDASIMPQIITGNLNATTIMIAEKIADRI 529
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 140/568 (24%), Positives = 231/568 (40%), Gaps = 95/568 (16%)
Query: 42 YDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYE------------NPNITDTGNF 87
+DYII+G G++G LA L++ N TVLLLE GG Y P N+
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNW 62
Query: 88 ATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASL----RYVREVG--- 140
A +P P +++ + R + LGG S+IN Y R + + +E G
Sbjct: 63 AYET-EPEP------YMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLEH 115
Query: 141 W-------------TESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTF 187
W T + + Y + V+ P + + + ++EAGV T
Sbjct: 116 WSYLDCLPYYRKAETRDIGPNDYHGGDGPVSVTTPKPG-NNPLFEAMVEAGVQAGYPRT- 173
Query: 188 DHIYGTKVSG------TIFDEDGHRHSAADLLEYADPE-KLTVYLRAVVQRIKFTETGRA 240
D + G + G T+ + +A L+ A LT+ A+ I F G+
Sbjct: 174 DDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARGRPNLTIRTHALTDHIIFA--GKR 231
Query: 241 KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRV 300
+ + ++ A E++L AGAI SPQ+L SGVG LR+ I V
Sbjct: 232 AVGVEWLEGESTIPSKATA------NKEVLLCAGAIASPQILQRSGVGNPELLRQFDIPV 285
Query: 301 VVDQPNVGQGMSDNPMNALFVPSARPVEV-SLVQVVGITRFDS-YIETASGLSLAPSW-A 357
V D P VG+ + D+ L PV + +Q + + ++ +G+ + + A
Sbjct: 286 VHDLPGVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEA 345
Query: 358 QGLTRDYSSF----LNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTG 413
G R + F + +P + E G++R+ S G
Sbjct: 346 GGFIRSRAEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRS----------PSRG 395
Query: 414 HLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELID 473
H+RL++ D +P++ FNY +D +R +++N AL K+R ++S
Sbjct: 396 HVRLKSRDPHAHPAILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREIS------ 449
Query: 474 LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD----RVVDRDYKVLGVDG 529
P + L++F R+ T +H G C++ VVD + +V G++G
Sbjct: 450 ----------PGIECQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEG 499
Query: 530 LRVIDGSTFYNSPGTNPQATCMMLGRYM 557
LRV+D S N AT +M+G M
Sbjct: 500 LRVVDASIMPQIITGNLNATTIMIGEKM 527
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 141/575 (24%), Positives = 224/575 (38%), Gaps = 107/575 (18%)
Query: 43 DYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYENPNITDTGNFATT---------- 90
D++I+G G++G LA LS++ +VL++E GGS + P I A
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDF-GPFIQMPAALAWPMSMKRYNWGY 62
Query: 91 LLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREV------GWTES 144
L +P P +++ + R +V+GG S IN Y R GW +
Sbjct: 63 LSEPEPNLNNRRITA------PRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYA 116
Query: 145 LVNSSYEWVEKKVAHE--------PPMLQ---WQSAVRDGLLEAGVLPYNGFTFDHIY-G 192
V ++ +E E P +Q + + + +EAG GF Y G
Sbjct: 117 DVLPYFKRMEHSHGGEEGWRGTDGPLHVQRGGFTNPLFRAFVEAG--KQAGFETTEDYNG 174
Query: 193 TKVSG------TIFDEDGHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAH 245
+K G TIF G R SAA+ L+ A K + QRI E GRA
Sbjct: 175 SKQEGFGLMEQTIFS--GRRWSAANAYLKPALKRKNVEIIYGFAQRI-VIEDGRATGVE- 230
Query: 246 CVTFYDHVGARHRACLNNGGK-------NEIILSAGAIGSPQLLMLSGVGPANELRKRGI 298
+ GGK E+I+SA + SP+LLMLSG+GP L++ GI
Sbjct: 231 ---------------IERGGKIEVVKANREVIVSASSFNSPKLLMLSGIGPGEHLKEMGI 275
Query: 299 RVVVDQPNVGQGMSDNPMNALFVPSARPVEVS-----LVQVVGITRFDSYIETASGLSLA 353
V D+P VG + D+ S +PV + Q V + ++ + GL +
Sbjct: 276 EVKADRPGVGANLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQ---WLLSKGGLGAS 332
Query: 354 PSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTG 413
+ + L + DI P ++ + + G + K S G
Sbjct: 333 NQFEACAFLRSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSK-----SRG 387
Query: 414 HLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELID 473
+ LR+ D +P + FNY ED + +R ++ A +R ++
Sbjct: 388 SVTLRSPDPKADPVLRFNYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEI------- 440
Query: 474 LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGV 527
+P V + ++ F R+ + + +H G C++ VVD +V+GV
Sbjct: 441 ---------QPGESVQSDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGV 491
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRIL 562
+ LRV D S F + N +M G IL
Sbjct: 492 EALRVADSSIFPHVTYGNLNGPSIMTGEKAADHIL 526
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 153/578 (26%), Positives = 232/578 (40%), Gaps = 98/578 (16%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPYE------------NPNITDTGNF 87
+DYII+G G++G LA L+++A +VLLLE GG Y P N+
Sbjct: 5 FDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNW 64
Query: 88 ATTLLDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS--------------- 132
A DP P +++ R + LGG S+IN Y R +
Sbjct: 65 AYET-DPEPHMNNRRMEC------GRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLED 117
Query: 133 ------LRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFT 186
L Y R+ + + + Y + V+ P + + ++EAGV T
Sbjct: 118 WTYHDCLPYFRKA-ESRDIGPNDYHGGDGPVSVTTPKA-GNNPLFHAMVEAGVQAGYPRT 175
Query: 187 FDHIYGTKVSG-----TIFDEDGHRHSAAD--LLEYADPEKLTVYLRAVVQRIKFTETGR 239
D + G + G G R S A L + + LT+ A RI F + R
Sbjct: 176 -DDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILF-DGKR 233
Query: 240 AKPTAHCV-TFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGI 298
A ++ + D AR R E++L AGAI SPQ+L SGVGPA LR+ I
Sbjct: 234 ASGVSYLIGNANDATEARAR--------REVLLCAGAIASPQILQRSGVGPAALLRELDI 285
Query: 299 RVVVDQPNVGQGMSDNPMNALFVPSARPVE----VSLVQVVGITRFDSYIETASGLSLAP 354
+V + P VGQ + D+ L +PV + L+ GI ++ T +G+ +
Sbjct: 286 ALVHELPGVGQNLQDHLEMYLQYACTQPVSLYPALKLLNQPGIGA--QWLFTGNGIGASN 343
Query: 355 SW-AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTG 413
+ A G R F +I P VA N+ +A V M S G
Sbjct: 344 QFEAGGFIRTRPEFA-WPNIQFHFLP--VAINYNGSNAVNEHGFQAHV---GSMRSPSRG 397
Query: 414 HLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELID 473
++L++ D +PS+ FNY +D +R +++ AL +R ++S
Sbjct: 398 RIQLKSKDPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREIS------ 451
Query: 474 LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDR----VVDRDYKVLGVDG 529
P + L+ F R+ T +H C++ VVD +V GV G
Sbjct: 452 ----------PGIDCQSDAELDAFIREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQG 501
Query: 530 LRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR 567
LRV+D S N AT +M+ + RI RDR
Sbjct: 502 LRVVDASIMPEIITGNLNATTIMMAEKIADRI---RDR 536
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 130/298 (43%), Gaps = 47/298 (15%)
Query: 265 GKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSA 324
+NE++LS GAI +P+LLMLSG+GPA L + GI V+VD P VG+ + D+P + +
Sbjct: 261 ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAK 320
Query: 325 RPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAE 384
+P+ Q W G+ L++ D+ ++ +V
Sbjct: 321 QPMVAESTQW---------------------WEIGIFTPTEDGLDRPDL--MMHYGSVPF 357
Query: 385 AVETVNSYLNGTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPE--DLVRC 442
+ T+ T + + RS G +RLR+ D D P V YF +PE D+
Sbjct: 358 DMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVM 417
Query: 443 VQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTV 502
V G+R ++ A++++ ++S P L+ + R T
Sbjct: 418 VAGIRKAREIAAQPAMAEWTGRELS----------------PGVEAQTDEELQDYIRKTH 461
Query: 503 MTIWHYHGGCQVDRV------VDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554
T++H G ++ V +D + +V GV GLRV D S NP T MM+G
Sbjct: 462 NTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIG 519
>sp|A8Z5A4|BETA_STAAT Choline dehydrogenase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=betA PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|Q6GDJ1|BETA_STAAR Choline dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=betA PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|P60337|BETA_STAAN Choline dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=betA PE=1 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|P60336|BETA_STAAM Choline dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=betA PE=1 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|A6QK99|BETA_STAAE Choline dehydrogenase OS=Staphylococcus aureus (strain Newman)
GN=betA PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|Q5HCU1|BETA_STAAC Choline dehydrogenase OS=Staphylococcus aureus (strain COL) GN=betA
PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|Q2YWJ5|BETA_STAAB Choline dehydrogenase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=betA PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|A5IW37|BETA_STAA9 Choline dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=betA
PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|Q2FV11|BETA_STAA8 Choline dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=betA PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|Q2FDP9|BETA_STAA3 Choline dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=betA PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
>sp|A6U4Z2|BETA_STAA2 Choline dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=betA
PE=3 SV=1
Length = 569
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 234/566 (41%), Gaps = 99/566 (17%)
Query: 42 YDYIIVGGGTSGCPLAATLSQNA--TVLLLEKGGSPY------ENPN--ITDTGNFATTL 91
YDY+I+GGG++G L LS++ VL+LE G S Y + P + +GN
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGN---KF 64
Query: 92 LDPSPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRAS-LRYVREVGWTESLVNSSY 150
D ++ + + V +AR +VLGG S IN Y R + + Y GW E ++
Sbjct: 65 YDWIYSTDEEPHMGGRKVAHARGKVLGGSSSINGMIYQRGNPMDYE---GWAEPEGMETW 121
Query: 151 EWV------------------EKKVAHEPPMLQWQSAVRDGLLE----AGVLPYNGFTFD 188
++ +K H+ P+ + + L + AGV T D
Sbjct: 122 DFAHCLPYFKKLEKTYGAAPYDKFRGHDGPIKLKRGPATNPLFQSFFDAGVEAGYHKTPD 181
Query: 189 HIYGTKVSG-TIFDEDGHR-----HSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242
+ G + G FD HR S A L + LTV RA V I + GR
Sbjct: 182 -VNGFRQEGFGPFDSQVHRGRRMSASRAYLHPAMKRKNLTVETRAFVTEIHYE--GR--- 235
Query: 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVV 302
A VT+ + L+ NE+ILS GA +PQLL LSG+G + L+ +GI V
Sbjct: 236 RATGVTY------KKNGKLHTIDANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRV 289
Query: 303 DQPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFD----SYIETASGLSLAPSWAQ 358
P VG+ D+ +++ VSL + I R +I T +G + + +
Sbjct: 290 HLPGVGENFEDH--LEVYIQHKCKEPVSLQPSLDIKRMPFIGLQWIFTRTGAAASNHFEG 347
Query: 359 GLTRDYSSFLNKTDIPSLV---TPETVAEAVETVNSYLNGTIRAGVIVEKIMGPRSTGHL 415
G + N+ D P+L+ P V + + G M S G L
Sbjct: 348 G---GFVRSNNEVDYPNLMFHFLPIAVRYDGQKAAVAHGYQVHVGP-----MYSNSRGSL 399
Query: 416 RLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSV------- 468
++++ D + PS+ FNY ED V+ +R ++L+ +A+ F ++S
Sbjct: 400 KIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMDPFNGGEISPGPEVQTD 459
Query: 469 QELID-LMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGV 527
+E++D + + T L P S S + M + VD + KV G+
Sbjct: 460 EEILDWVRRDGETALHP------SCSAKMGPASDPMAV--------VDPLT---MKVHGM 502
Query: 528 DGLRVIDGSTFYNSPGTNPQATCMML 553
+ LRV+D S + N A +ML
Sbjct: 503 ENLRVVDASAMPRTTNGNIHAPVLML 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,721,804
Number of Sequences: 539616
Number of extensions: 9861676
Number of successful extensions: 25550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 24731
Number of HSP's gapped (non-prelim): 466
length of query: 570
length of database: 191,569,459
effective HSP length: 123
effective length of query: 447
effective length of database: 125,196,691
effective search space: 55962920877
effective search space used: 55962920877
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)