Query 008331
Match_columns 570
No_of_seqs 215 out of 1524
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 3.2E-85 7E-90 703.9 47.0 539 25-567 29-582 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 2.4E-82 5.3E-87 653.5 36.8 506 29-567 45-618 (623)
3 PRK02106 choline dehydrogenase 100.0 9.4E-74 2E-78 621.2 41.8 491 39-565 3-535 (560)
4 TIGR01810 betA choline dehydro 100.0 2.8E-73 6E-78 614.4 41.4 487 43-564 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 3.4E-66 7.4E-71 553.8 35.3 490 38-564 4-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 6.5E-50 1.4E-54 421.6 37.9 467 42-564 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 2.7E-43 5.8E-48 354.2 14.2 263 42-315 1-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 8.2E-33 1.8E-37 247.1 10.0 139 409-557 1-144 (144)
9 PRK06481 fumarate reductase fl 99.6 1.4E-14 3.1E-19 155.7 19.7 190 38-283 58-257 (506)
10 PRK12845 3-ketosteroid-delta-1 99.6 1.1E-14 2.3E-19 157.7 18.7 63 212-284 223-285 (564)
11 PRK07121 hypothetical protein; 99.6 4.5E-14 9.8E-19 151.8 17.6 194 39-285 18-247 (492)
12 PRK12835 3-ketosteroid-delta-1 99.6 6.4E-14 1.4E-18 152.6 16.9 61 214-283 221-281 (584)
13 PF00890 FAD_binding_2: FAD bi 99.6 3.4E-14 7.3E-19 150.0 13.9 187 43-284 1-209 (417)
14 PRK12844 3-ketosteroid-delta-1 99.5 9.6E-14 2.1E-18 150.6 16.8 63 212-284 214-276 (557)
15 PRK08274 tricarballylate dehyd 99.5 9.2E-14 2E-18 148.7 15.8 196 39-289 2-204 (466)
16 PRK12837 3-ketosteroid-delta-1 99.5 2.3E-13 5.1E-18 146.5 17.8 62 212-283 179-241 (513)
17 PRK12834 putative FAD-binding 99.5 4E-13 8.7E-18 146.0 17.7 193 39-283 2-233 (549)
18 TIGR01813 flavo_cyto_c flavocy 99.5 3.8E-13 8.3E-18 142.8 14.0 63 212-283 136-198 (439)
19 PRK12839 hypothetical protein; 99.5 1.3E-12 2.8E-17 141.9 17.9 63 212-283 220-282 (572)
20 PRK06175 L-aspartate oxidase; 99.5 8.7E-13 1.9E-17 139.0 15.0 177 40-278 3-190 (433)
21 PRK07843 3-ketosteroid-delta-1 99.4 2.2E-12 4.7E-17 140.3 18.1 63 213-285 215-277 (557)
22 PRK07573 sdhA succinate dehydr 99.4 1E-12 2.2E-17 144.5 15.5 196 26-278 15-233 (640)
23 PTZ00306 NADH-dependent fumara 99.4 1.7E-12 3.7E-17 151.7 17.4 58 218-280 559-623 (1167)
24 PRK12842 putative succinate de 99.4 3.5E-12 7.5E-17 139.4 18.5 63 212-284 220-282 (574)
25 PRK06263 sdhA succinate dehydr 99.4 1.5E-12 3.2E-17 141.5 14.3 58 212-278 140-198 (543)
26 PRK12843 putative FAD-binding 99.4 4.2E-12 9.1E-17 138.6 17.7 63 212-284 227-289 (578)
27 PRK08958 sdhA succinate dehydr 99.4 2.6E-12 5.6E-17 140.2 15.9 58 212-278 149-207 (588)
28 PRK07395 L-aspartate oxidase; 99.4 1.8E-12 3.9E-17 140.3 14.5 57 212-278 140-198 (553)
29 PRK06134 putative FAD-binding 99.4 5.5E-12 1.2E-16 137.8 18.3 62 212-283 223-284 (581)
30 PLN00128 Succinate dehydrogena 99.4 2.4E-12 5.3E-17 141.0 15.4 58 212-278 193-251 (635)
31 PRK06452 sdhA succinate dehydr 99.4 3E-12 6.4E-17 139.3 15.7 56 212-277 142-198 (566)
32 PTZ00139 Succinate dehydrogena 99.4 3.1E-12 6.7E-17 140.2 15.7 58 212-278 172-230 (617)
33 PRK09078 sdhA succinate dehydr 99.4 2.9E-12 6.4E-17 140.2 15.2 58 212-278 155-213 (598)
34 PLN02815 L-aspartate oxidase 99.4 2.9E-12 6.2E-17 139.3 13.8 61 212-278 161-223 (594)
35 COG2081 Predicted flavoprotein 99.4 5.9E-12 1.3E-16 124.8 12.6 168 40-281 2-171 (408)
36 PRK07804 L-aspartate oxidase; 99.4 1.1E-11 2.3E-16 134.4 15.8 38 38-75 13-51 (541)
37 PRK09077 L-aspartate oxidase; 99.3 1.4E-11 3E-16 133.4 16.0 62 212-278 144-208 (536)
38 PRK08071 L-aspartate oxidase; 99.3 1.1E-11 2.5E-16 133.2 14.9 56 212-278 136-191 (510)
39 PRK05945 sdhA succinate dehydr 99.3 1.6E-11 3.5E-16 134.1 15.2 57 212-278 141-198 (575)
40 PRK09231 fumarate reductase fl 99.3 2.1E-11 4.6E-16 133.0 15.9 51 218-278 146-197 (582)
41 PRK08641 sdhA succinate dehydr 99.3 1.6E-11 3.5E-16 134.1 14.9 50 220-278 151-201 (589)
42 PRK08626 fumarate reductase fl 99.3 1.3E-11 2.7E-16 136.1 14.0 57 212-278 164-221 (657)
43 PRK07057 sdhA succinate dehydr 99.3 1.2E-11 2.6E-16 135.2 13.6 58 212-278 154-212 (591)
44 TIGR00551 nadB L-aspartate oxi 99.3 3.8E-11 8.3E-16 128.8 15.7 56 212-278 134-190 (488)
45 TIGR01176 fum_red_Fp fumarate 99.3 3.6E-11 7.8E-16 130.9 15.3 52 217-278 144-196 (580)
46 PRK07803 sdhA succinate dehydr 99.3 2.1E-11 4.6E-16 134.0 13.5 48 221-278 166-214 (626)
47 PRK11101 glpA sn-glycerol-3-ph 99.3 4.3E-11 9.3E-16 129.9 15.4 65 212-287 155-220 (546)
48 TIGR01812 sdhA_frdA_Gneg succi 99.3 5.3E-11 1.1E-15 130.3 15.6 57 212-278 135-192 (566)
49 PRK06069 sdhA succinate dehydr 99.3 4.3E-11 9.4E-16 130.9 14.8 57 212-278 143-201 (577)
50 PF03486 HI0933_like: HI0933-l 99.3 9.7E-12 2.1E-16 128.7 8.6 167 42-280 1-169 (409)
51 PRK08205 sdhA succinate dehydr 99.2 4.2E-11 9.2E-16 130.9 12.8 58 212-278 146-207 (583)
52 TIGR01811 sdhA_Bsu succinate d 99.2 7.5E-11 1.6E-15 129.0 14.3 53 217-278 144-197 (603)
53 PRK07512 L-aspartate oxidase; 99.2 7.9E-11 1.7E-15 126.8 13.7 56 212-278 142-198 (513)
54 PRK08275 putative oxidoreducta 99.2 1.7E-10 3.6E-15 125.7 13.7 57 212-277 143-200 (554)
55 TIGR02061 aprA adenosine phosp 99.2 1.8E-10 3.9E-15 125.3 13.3 53 216-277 136-191 (614)
56 PF01266 DAO: FAD dependent ox 99.2 5.3E-11 1.1E-15 122.6 7.6 60 212-287 153-212 (358)
57 PLN02464 glycerol-3-phosphate 99.2 1.6E-10 3.4E-15 127.0 11.5 65 212-286 238-304 (627)
58 PRK06854 adenylylsulfate reduc 99.1 6.6E-10 1.4E-14 121.9 16.1 56 212-277 138-195 (608)
59 COG0579 Predicted dehydrogenas 99.1 5.1E-10 1.1E-14 114.8 14.0 66 211-290 158-223 (429)
60 PTZ00383 malate:quinone oxidor 99.1 1.3E-09 2.9E-14 115.8 14.7 61 212-288 217-283 (497)
61 PRK13800 putative oxidoreducta 99.1 1.3E-09 2.8E-14 125.0 14.8 51 218-278 155-206 (897)
62 PRK12266 glpD glycerol-3-phosp 99.1 2.2E-09 4.8E-14 115.6 15.8 60 213-284 162-222 (508)
63 COG0578 GlpA Glycerol-3-phosph 99.1 2.9E-09 6.3E-14 111.6 15.7 63 215-289 173-236 (532)
64 PRK04176 ribulose-1,5-biphosph 99.1 5E-10 1.1E-14 109.2 9.6 36 39-74 23-59 (257)
65 PF01946 Thi4: Thi4 family; PD 99.1 1.8E-10 3.9E-15 105.4 5.8 36 39-74 15-51 (230)
66 TIGR02485 CobZ_N-term precorri 99.1 1.2E-09 2.5E-14 115.8 12.9 61 212-284 129-190 (432)
67 TIGR01320 mal_quin_oxido malat 99.1 6.3E-09 1.4E-13 110.9 18.0 66 212-288 184-250 (483)
68 PRK08401 L-aspartate oxidase; 99.0 3.3E-09 7E-14 113.2 14.3 32 42-73 2-34 (466)
69 PRK13369 glycerol-3-phosphate 99.0 4.4E-09 9.5E-14 113.4 15.0 60 213-284 162-221 (502)
70 PRK05257 malate:quinone oxidor 99.0 9.3E-09 2E-13 109.7 16.8 66 212-288 189-256 (494)
71 TIGR01373 soxB sarcosine oxida 99.0 6.5E-09 1.4E-13 109.4 15.2 60 212-286 189-248 (407)
72 TIGR00292 thiazole biosynthesi 99.0 1.4E-09 3.1E-14 105.7 9.1 36 39-74 19-55 (254)
73 COG1635 THI4 Ribulose 1,5-bisp 99.0 1.4E-09 3.1E-14 98.7 8.3 35 40-74 29-64 (262)
74 PRK12409 D-amino acid dehydrog 99.0 4.7E-09 1E-13 110.6 13.7 33 42-74 2-35 (410)
75 COG3573 Predicted oxidoreducta 99.0 8.7E-09 1.9E-13 99.0 12.9 36 39-74 3-39 (552)
76 PLN02661 Putative thiazole syn 99.0 6.5E-09 1.4E-13 103.9 12.6 35 39-73 90-126 (357)
77 TIGR01377 soxA_mon sarcosine o 99.0 1.1E-08 2.4E-13 106.6 14.9 33 42-74 1-34 (380)
78 TIGR03329 Phn_aa_oxid putative 98.9 3.3E-09 7.1E-14 113.3 10.8 38 36-73 19-59 (460)
79 PRK11259 solA N-methyltryptoph 98.9 1.4E-08 3E-13 105.7 15.4 35 40-74 2-37 (376)
80 COG0029 NadB Aspartate oxidase 98.9 1.1E-08 2.5E-13 104.1 13.4 57 212-277 139-196 (518)
81 COG1053 SdhA Succinate dehydro 98.9 3.2E-09 6.9E-14 114.0 10.0 56 213-277 145-202 (562)
82 PRK13339 malate:quinone oxidor 98.9 3.4E-08 7.3E-13 104.7 17.4 66 212-288 190-257 (497)
83 KOG2404 Fumarate reductase, fl 98.9 4.1E-09 8.8E-14 100.7 8.9 56 219-284 158-214 (477)
84 PRK00711 D-amino acid dehydrog 98.9 2E-08 4.3E-13 106.1 14.5 57 212-284 207-263 (416)
85 PRK11728 hydroxyglutarate oxid 98.9 1.1E-08 2.3E-13 107.2 12.0 59 212-287 155-213 (393)
86 PF12831 FAD_oxidored: FAD dep 98.9 1.5E-09 3.2E-14 114.5 4.9 59 215-287 99-157 (428)
87 PRK10157 putative oxidoreducta 98.8 1.2E-08 2.6E-13 107.7 8.9 36 40-75 4-40 (428)
88 PTZ00363 rab-GDP dissociation 98.8 7.8E-08 1.7E-12 100.9 14.6 42 39-80 2-44 (443)
89 COG0644 FixC Dehydrogenases (f 98.8 2.6E-08 5.7E-13 104.2 10.6 37 40-76 2-39 (396)
90 PRK13977 myosin-cross-reactive 98.7 1.3E-07 2.8E-12 100.5 14.1 62 212-277 232-293 (576)
91 PF06039 Mqo: Malate:quinone o 98.7 3.2E-07 7E-12 93.4 16.0 66 212-288 187-254 (488)
92 TIGR03364 HpnW_proposed FAD de 98.7 4.3E-08 9.2E-13 101.6 10.0 33 42-74 1-34 (365)
93 KOG0042 Glycerol-3-phosphate d 98.7 3.9E-08 8.5E-13 100.4 9.3 73 202-284 217-293 (680)
94 PRK01747 mnmC bifunctional tRN 98.7 1.5E-07 3.2E-12 105.2 12.8 33 41-73 260-293 (662)
95 PRK05192 tRNA uridine 5-carbox 98.7 1.4E-07 2.9E-12 101.2 11.7 35 39-73 2-37 (618)
96 PRK10015 oxidoreductase; Provi 98.6 1.3E-07 2.8E-12 99.8 10.8 36 40-75 4-40 (429)
97 KOG1298 Squalene monooxygenase 98.6 2.9E-07 6.2E-12 90.5 11.1 57 215-285 157-213 (509)
98 PLN02172 flavin-containing mon 98.6 1.9E-07 4.2E-12 98.9 10.7 37 39-75 8-45 (461)
99 TIGR00275 flavoprotein, HI0933 98.6 2.4E-07 5.1E-12 97.0 11.3 31 45-75 1-32 (400)
100 COG1233 Phytoene dehydrogenase 98.6 4.4E-07 9.6E-12 97.3 13.6 38 40-77 2-40 (487)
101 COG0665 DadA Glycine/D-amino a 98.6 6.8E-07 1.5E-11 93.3 14.5 37 39-75 2-39 (387)
102 KOG2820 FAD-dependent oxidored 98.6 4.3E-07 9.4E-12 87.9 11.6 61 212-285 159-219 (399)
103 TIGR02730 carot_isom carotene 98.6 4E-07 8.8E-12 98.2 12.7 68 201-282 224-291 (493)
104 COG3380 Predicted NAD/FAD-depe 98.6 2.9E-07 6.3E-12 86.5 9.6 31 43-73 3-34 (331)
105 PRK06185 hypothetical protein; 98.5 2.9E-07 6.3E-12 96.9 10.1 36 38-73 3-39 (407)
106 PLN02985 squalene monooxygenas 98.5 8.4E-07 1.8E-11 95.5 12.3 37 37-73 39-76 (514)
107 PRK05675 sdhA succinate dehydr 98.5 1.4E-06 3E-11 95.2 14.2 58 212-278 132-190 (570)
108 KOG2415 Electron transfer flav 98.5 1.5E-07 3.2E-12 93.2 5.8 76 214-298 191-279 (621)
109 PF01134 GIDA: Glucose inhibit 98.4 6.5E-07 1.4E-11 91.1 9.0 47 216-277 106-152 (392)
110 PRK08773 2-octaprenyl-3-methyl 98.4 1.8E-06 3.9E-11 90.4 12.5 36 39-74 4-40 (392)
111 TIGR02734 crtI_fam phytoene de 98.4 5.7E-07 1.2E-11 97.4 8.5 68 202-283 215-282 (502)
112 PF13738 Pyr_redox_3: Pyridine 98.4 1.8E-07 3.8E-12 88.3 3.6 56 215-285 91-146 (203)
113 KOG2853 Possible oxidoreductas 98.4 2.2E-06 4.8E-11 83.0 10.0 68 215-289 252-331 (509)
114 PRK07364 2-octaprenyl-6-methox 98.4 3.7E-06 8.1E-11 88.7 12.9 36 39-74 16-52 (415)
115 PRK06126 hypothetical protein; 98.3 1.1E-05 2.3E-10 88.4 16.1 35 39-73 5-40 (545)
116 COG2072 TrkA Predicted flavopr 98.3 4.8E-06 1E-10 88.0 12.9 39 38-76 5-45 (443)
117 PRK07208 hypothetical protein; 98.3 1.1E-05 2.3E-10 87.0 15.5 39 39-77 2-41 (479)
118 PLN02697 lycopene epsilon cycl 98.3 2.1E-06 4.6E-11 92.0 9.6 34 39-72 106-140 (529)
119 TIGR01816 sdhA_forward succina 98.3 5.3E-06 1.1E-10 90.7 12.7 57 212-278 125-182 (565)
120 PRK06467 dihydrolipoamide dehy 98.3 5.2E-06 1.1E-10 88.9 11.3 35 39-73 2-37 (471)
121 PRK05976 dihydrolipoamide dehy 98.2 9.2E-06 2E-10 87.1 12.8 34 39-72 2-36 (472)
122 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.3E-05 2.9E-10 87.4 14.1 36 39-74 8-44 (538)
123 PRK08244 hypothetical protein; 98.2 7.9E-06 1.7E-10 88.2 11.4 34 41-74 2-36 (493)
124 TIGR03378 glycerol3P_GlpB glyc 98.2 1.4E-05 3.1E-10 82.4 12.5 62 212-285 269-330 (419)
125 PRK06847 hypothetical protein; 98.2 7E-06 1.5E-10 85.4 9.6 35 40-74 3-38 (375)
126 TIGR01988 Ubi-OHases Ubiquinon 98.2 1E-05 2.2E-10 84.5 10.6 33 43-75 1-34 (385)
127 PRK07818 dihydrolipoamide dehy 98.1 2.7E-05 5.8E-10 83.5 13.5 33 40-72 3-36 (466)
128 PRK07190 hypothetical protein; 98.1 2.3E-05 5E-10 84.1 12.6 36 39-74 3-39 (487)
129 TIGR00136 gidA glucose-inhibit 98.1 2.2E-05 4.8E-10 84.4 12.2 32 42-73 1-33 (617)
130 PRK07333 2-octaprenyl-6-methox 98.1 1.6E-05 3.4E-10 83.6 11.1 34 41-74 1-37 (403)
131 PRK06834 hypothetical protein; 98.1 2.8E-05 6E-10 83.5 12.9 34 41-74 3-37 (488)
132 PRK06184 hypothetical protein; 98.1 3.9E-05 8.5E-10 83.0 14.1 35 40-74 2-37 (502)
133 PRK07045 putative monooxygenas 98.1 3.7E-05 8.1E-10 80.3 13.5 36 39-74 3-39 (388)
134 PRK08243 4-hydroxybenzoate 3-m 98.1 3.3E-05 7.2E-10 80.8 13.1 34 41-74 2-36 (392)
135 KOG2665 Predicted FAD-dependen 98.1 1.5E-05 3.3E-10 76.5 9.4 39 36-74 43-84 (453)
136 KOG4254 Phytoene desaturase [C 98.1 1.5E-05 3.3E-10 80.2 9.5 58 212-283 270-327 (561)
137 COG0445 GidA Flavin-dependent 98.1 7.5E-06 1.6E-10 84.6 7.0 47 217-277 112-158 (621)
138 COG2509 Uncharacterized FAD-de 98.1 4.5E-05 9.8E-10 77.4 12.4 193 39-275 16-228 (486)
139 KOG2844 Dimethylglycine dehydr 98.0 4.2E-05 9.1E-10 80.6 12.1 74 198-287 176-252 (856)
140 PRK11445 putative oxidoreducta 98.0 6.1E-05 1.3E-09 77.6 13.1 33 42-74 2-34 (351)
141 COG0654 UbiH 2-polyprenyl-6-me 98.0 2.7E-05 5.7E-10 81.4 10.2 32 41-72 2-34 (387)
142 PRK08132 FAD-dependent oxidore 98.0 7.4E-05 1.6E-09 81.8 14.1 36 39-74 21-57 (547)
143 PRK15317 alkyl hydroperoxide r 98.0 3.5E-05 7.5E-10 83.6 11.2 33 39-71 209-242 (517)
144 PF13450 NAD_binding_8: NAD(P) 98.0 4.1E-06 9E-11 63.6 2.8 31 46-76 1-32 (68)
145 TIGR02731 phytoene_desat phyto 98.0 0.0002 4.4E-09 76.5 16.4 35 43-77 1-36 (453)
146 TIGR03377 glycerol3P_GlpA glyc 97.9 7E-05 1.5E-09 81.3 12.3 65 212-287 134-199 (516)
147 KOG2960 Protein involved in th 97.9 8.7E-06 1.9E-10 73.7 3.8 33 41-73 76-111 (328)
148 PLN00093 geranylgeranyl diphos 97.9 7.9E-06 1.7E-10 86.6 4.0 37 37-73 35-72 (450)
149 COG0562 Glf UDP-galactopyranos 97.9 1E-05 2.2E-10 78.2 4.3 39 41-79 1-40 (374)
150 PRK07236 hypothetical protein; 97.9 0.00029 6.2E-09 73.6 15.6 34 40-73 5-39 (386)
151 PRK07588 hypothetical protein; 97.9 3.1E-05 6.7E-10 81.0 8.1 32 43-74 2-34 (391)
152 PF00743 FMO-like: Flavin-bind 97.9 2E-05 4.4E-10 84.9 6.7 34 43-76 3-37 (531)
153 KOG1399 Flavin-containing mono 97.8 7.1E-05 1.5E-09 78.3 9.6 35 41-75 6-41 (448)
154 TIGR03140 AhpF alkyl hydropero 97.8 0.0001 2.2E-09 79.9 11.1 33 39-71 210-243 (515)
155 TIGR01421 gluta_reduc_1 glutat 97.8 1.2E-05 2.6E-10 85.5 3.8 34 40-73 1-35 (450)
156 TIGR02023 BchP-ChlP geranylger 97.8 1E-05 2.3E-10 84.5 3.2 31 42-72 1-32 (388)
157 PTZ00058 glutathione reductase 97.8 2E-05 4.3E-10 85.5 5.2 35 39-73 46-81 (561)
158 TIGR02032 GG-red-SF geranylger 97.8 1.5E-05 3.3E-10 79.6 3.8 34 42-75 1-35 (295)
159 TIGR01424 gluta_reduc_2 glutat 97.8 1.7E-05 3.7E-10 84.4 3.8 32 41-72 2-34 (446)
160 PF01494 FAD_binding_3: FAD bi 97.8 1.7E-05 3.7E-10 81.4 3.6 35 41-75 1-36 (356)
161 PRK07845 flavoprotein disulfid 97.7 0.00018 4E-09 76.9 11.0 31 43-73 3-34 (466)
162 PRK06116 glutathione reductase 97.7 2.7E-05 5.9E-10 83.0 3.9 34 40-73 3-37 (450)
163 PRK08020 ubiF 2-octaprenyl-3-m 97.7 2.9E-05 6.2E-10 81.3 3.9 35 39-73 3-38 (391)
164 PRK08010 pyridine nucleotide-d 97.7 3E-05 6.6E-10 82.5 4.0 35 40-74 2-37 (441)
165 PRK07608 ubiquinone biosynthes 97.7 3.1E-05 6.6E-10 81.0 3.9 37 39-75 3-40 (388)
166 PRK06370 mercuric reductase; V 97.7 3.8E-05 8.2E-10 82.2 4.5 37 39-75 3-40 (463)
167 PRK06416 dihydrolipoamide dehy 97.7 3.1E-05 6.7E-10 82.9 3.8 35 39-73 2-37 (462)
168 PF04820 Trp_halogenase: Trypt 97.7 4.5E-05 9.7E-10 81.0 4.8 50 212-275 160-209 (454)
169 PRK05868 hypothetical protein; 97.7 0.00065 1.4E-08 70.5 13.4 32 43-74 3-35 (372)
170 PRK06115 dihydrolipoamide dehy 97.7 3.6E-05 7.9E-10 82.3 4.1 32 41-72 3-35 (466)
171 TIGR02028 ChlP geranylgeranyl 97.6 2.9E-05 6.3E-10 81.3 3.1 32 42-73 1-33 (398)
172 PTZ00367 squalene epoxidase; P 97.6 4.9E-05 1.1E-09 82.5 4.8 35 39-73 31-66 (567)
173 TIGR00031 UDP-GALP_mutase UDP- 97.6 4.1E-05 9E-10 78.6 3.9 36 42-77 2-38 (377)
174 PRK09126 hypothetical protein; 97.6 3.5E-05 7.6E-10 80.7 3.5 34 41-74 3-37 (392)
175 PRK05249 soluble pyridine nucl 97.6 4.5E-05 9.7E-10 81.7 4.3 38 39-76 3-41 (461)
176 PRK08013 oxidoreductase; Provi 97.6 4E-05 8.6E-10 80.5 3.7 34 41-74 3-37 (400)
177 PRK07251 pyridine nucleotide-d 97.6 4.2E-05 9E-10 81.3 3.9 34 41-74 3-37 (438)
178 PRK05714 2-octaprenyl-3-methyl 97.6 4.2E-05 9.2E-10 80.4 3.7 33 41-73 2-35 (405)
179 PLN02546 glutathione reductase 97.6 4.3E-05 9.3E-10 83.0 3.7 33 39-71 77-110 (558)
180 KOG0029 Amine oxidase [Seconda 97.6 5.6E-05 1.2E-09 80.5 4.4 40 38-77 12-52 (501)
181 COG3634 AhpF Alkyl hydroperoxi 97.6 0.00027 5.9E-09 69.0 8.6 59 217-285 401-460 (520)
182 PRK07494 2-octaprenyl-6-methox 97.6 5.6E-05 1.2E-09 79.0 4.3 36 39-74 5-41 (388)
183 COG1249 Lpd Pyruvate/2-oxoglut 97.6 5E-05 1.1E-09 79.7 3.9 35 39-73 2-37 (454)
184 PLN02463 lycopene beta cyclase 97.6 5.7E-05 1.2E-09 79.8 4.0 35 39-73 26-61 (447)
185 PRK06292 dihydrolipoamide dehy 97.6 6.3E-05 1.4E-09 80.5 4.3 33 40-72 2-35 (460)
186 KOG0405 Pyridine nucleotide-di 97.5 0.00036 7.7E-09 68.3 8.8 34 39-72 18-52 (478)
187 PF06100 Strep_67kDa_ant: Stre 97.5 0.0014 3.1E-08 68.1 13.7 58 215-276 216-273 (500)
188 PRK14694 putative mercuric red 97.5 6.4E-05 1.4E-09 80.5 4.1 36 38-73 3-39 (468)
189 PTZ00153 lipoamide dehydrogena 97.5 6.1E-05 1.3E-09 83.0 4.0 33 40-72 115-148 (659)
190 PLN02676 polyamine oxidase 97.5 0.00012 2.6E-09 78.6 6.1 39 39-77 24-64 (487)
191 TIGR01350 lipoamide_DH dihydro 97.5 6.5E-05 1.4E-09 80.5 4.1 32 41-72 1-33 (461)
192 PF13434 K_oxygenase: L-lysine 97.5 0.00023 5E-09 72.6 7.8 63 210-281 98-161 (341)
193 COG0492 TrxB Thioredoxin reduc 97.5 5.9E-05 1.3E-09 75.2 3.3 34 40-73 2-37 (305)
194 PRK13748 putative mercuric red 97.5 6.9E-05 1.5E-09 82.4 4.2 34 40-73 97-131 (561)
195 PRK09897 hypothetical protein; 97.5 0.00067 1.4E-08 73.0 11.4 34 42-75 2-38 (534)
196 PRK08849 2-octaprenyl-3-methyl 97.5 6.5E-05 1.4E-09 78.4 3.6 33 41-73 3-36 (384)
197 PLN02507 glutathione reductase 97.5 5.7E-05 1.2E-09 81.4 3.0 33 39-71 23-56 (499)
198 TIGR01790 carotene-cycl lycope 97.5 8.3E-05 1.8E-09 77.7 4.0 32 43-74 1-33 (388)
199 TIGR02053 MerA mercuric reduct 97.5 7.3E-05 1.6E-09 80.1 3.6 33 42-74 1-34 (463)
200 TIGR02733 desat_CrtD C-3',4' d 97.5 8E-05 1.7E-09 80.5 3.9 36 42-77 2-38 (492)
201 TIGR03143 AhpF_homolog putativ 97.5 7.7E-05 1.7E-09 81.5 3.7 35 40-74 3-38 (555)
202 KOG2852 Possible oxidoreductas 97.5 5.6E-05 1.2E-09 71.9 2.0 61 215-287 157-217 (380)
203 PF05834 Lycopene_cycl: Lycope 97.4 8.8E-05 1.9E-09 77.0 3.6 32 43-74 1-35 (374)
204 TIGR01292 TRX_reduct thioredox 97.4 8.5E-05 1.8E-09 74.5 3.4 32 42-73 1-33 (300)
205 PRK06327 dihydrolipoamide dehy 97.4 9.7E-05 2.1E-09 79.3 3.6 32 40-71 3-35 (475)
206 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 9.8E-05 2.1E-09 77.2 3.4 34 41-74 2-36 (390)
207 TIGR01423 trypano_reduc trypan 97.4 0.00013 2.8E-09 78.2 4.4 33 40-72 2-36 (486)
208 PRK08850 2-octaprenyl-6-methox 97.4 0.0001 2.3E-09 77.4 3.6 32 41-72 4-36 (405)
209 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.00011 2.4E-09 76.6 3.6 33 43-75 1-35 (382)
210 PRK06617 2-octaprenyl-6-methox 97.4 0.00011 2.4E-09 76.3 3.5 32 42-73 2-34 (374)
211 PLN02268 probable polyamine ox 97.4 0.00013 2.9E-09 77.4 4.0 35 43-77 2-37 (435)
212 PTZ00052 thioredoxin reductase 97.4 0.00013 2.8E-09 78.6 3.7 33 40-72 4-37 (499)
213 PRK14727 putative mercuric red 97.3 0.0002 4.3E-09 77.0 4.1 36 40-75 15-51 (479)
214 COG1231 Monoamine oxidase [Ami 97.3 0.00023 5.1E-09 72.7 4.3 39 39-77 5-44 (450)
215 PRK10262 thioredoxin reductase 97.3 0.00018 4E-09 73.0 3.6 35 38-72 3-38 (321)
216 PRK11883 protoporphyrinogen ox 97.3 0.00018 4E-09 76.7 3.6 35 43-77 2-39 (451)
217 TIGR02352 thiamin_ThiO glycine 97.3 0.00077 1.7E-08 68.8 8.0 54 212-281 143-196 (337)
218 PRK07233 hypothetical protein; 97.3 0.0002 4.4E-09 75.9 3.7 35 43-77 1-36 (434)
219 PRK08163 salicylate hydroxylas 97.3 0.00021 4.6E-09 74.9 3.8 35 40-74 3-38 (396)
220 PRK05329 anaerobic glycerol-3- 97.2 0.0002 4.3E-09 74.9 3.4 33 41-73 2-35 (422)
221 PRK06996 hypothetical protein; 97.2 0.00024 5.3E-09 74.5 4.1 35 39-73 9-48 (398)
222 TIGR01989 COQ6 Ubiquinone bios 97.2 0.0002 4.4E-09 76.0 3.3 32 42-73 1-37 (437)
223 PRK05732 2-octaprenyl-6-methox 97.2 0.00025 5.5E-09 74.2 3.5 33 40-72 2-38 (395)
224 PRK06753 hypothetical protein; 97.2 0.00024 5.3E-09 73.7 3.3 32 43-74 2-34 (373)
225 PLN02576 protoporphyrinogen ox 97.2 0.00036 7.8E-09 75.5 4.5 39 39-77 10-50 (496)
226 COG2907 Predicted NAD/FAD-bind 97.2 0.0055 1.2E-07 60.3 12.0 39 41-79 8-46 (447)
227 TIGR01789 lycopene_cycl lycope 97.2 0.00034 7.3E-09 72.4 3.9 32 43-74 1-35 (370)
228 PF07992 Pyr_redox_2: Pyridine 97.1 0.00031 6.6E-09 65.9 3.2 31 43-73 1-32 (201)
229 PRK09754 phenylpropionate diox 97.1 0.018 3.8E-07 60.4 16.3 34 42-75 4-40 (396)
230 TIGR01438 TGR thioredoxin and 97.1 0.00034 7.4E-09 75.1 3.3 32 41-72 2-34 (484)
231 COG3349 Uncharacterized conser 97.1 0.00039 8.5E-09 72.3 3.6 34 44-77 3-37 (485)
232 PLN02568 polyamine oxidase 97.1 0.00047 1E-08 74.7 4.3 38 40-77 4-47 (539)
233 TIGR03197 MnmC_Cterm tRNA U-34 97.1 0.0037 7.9E-08 65.2 10.8 54 212-282 141-194 (381)
234 PRK07538 hypothetical protein; 97.1 0.00037 7.9E-09 73.5 3.2 32 43-74 2-34 (413)
235 TIGR03862 flavo_PP4765 unchara 97.0 0.0042 9.1E-08 63.8 10.7 88 168-281 57-145 (376)
236 PRK08294 phenol 2-monooxygenas 97.0 0.00052 1.1E-08 76.1 4.4 37 38-74 29-67 (634)
237 TIGR03452 mycothione_red mycot 97.0 0.00053 1.2E-08 73.1 4.1 32 41-73 2-33 (452)
238 PRK05335 tRNA (uracil-5-)-meth 97.0 0.00044 9.5E-09 71.5 3.2 34 42-75 3-37 (436)
239 PRK07846 mycothione reductase; 97.0 0.00062 1.3E-08 72.5 4.0 33 41-74 1-33 (451)
240 TIGR00562 proto_IX_ox protopor 96.9 0.00062 1.3E-08 72.9 3.8 36 42-77 3-43 (462)
241 COG1148 HdrA Heterodisulfide r 96.9 0.00053 1.2E-08 70.0 2.6 37 41-77 124-161 (622)
242 TIGR03315 Se_ygfK putative sel 96.9 0.00084 1.8E-08 76.9 4.3 37 40-76 536-573 (1012)
243 TIGR01372 soxA sarcosine oxida 96.9 0.00077 1.7E-08 78.6 4.0 65 212-287 357-421 (985)
244 PRK12416 protoporphyrinogen ox 96.9 0.00075 1.6E-08 72.3 3.5 35 43-77 3-44 (463)
245 PLN02927 antheraxanthin epoxid 96.8 0.0009 1.9E-08 73.5 4.0 35 39-73 79-114 (668)
246 PRK04965 NADH:flavorubredoxin 96.8 0.021 4.6E-07 59.3 14.1 62 212-288 189-250 (377)
247 COG3075 GlpB Anaerobic glycero 96.8 0.00092 2E-08 65.1 3.4 34 41-74 2-36 (421)
248 KOG4716 Thioredoxin reductase 96.8 0.0011 2.5E-08 64.6 3.7 35 37-71 15-50 (503)
249 PRK12831 putative oxidoreducta 96.8 0.0012 2.7E-08 70.4 4.3 37 39-75 138-175 (464)
250 PF13454 NAD_binding_9: FAD-NA 96.8 0.043 9.4E-07 49.2 13.6 30 45-74 1-36 (156)
251 KOG1335 Dihydrolipoamide dehyd 96.7 0.0017 3.8E-08 64.5 4.3 37 40-76 38-75 (506)
252 PRK06912 acoL dihydrolipoamide 96.7 0.0014 3E-08 70.1 4.0 33 43-75 2-35 (458)
253 PRK06475 salicylate hydroxylas 96.7 0.0012 2.7E-08 69.2 3.4 32 43-74 4-36 (400)
254 TIGR00137 gid_trmFO tRNA:m(5)U 96.6 0.0013 2.8E-08 68.4 3.3 33 42-74 1-34 (433)
255 PLN02529 lysine-specific histo 96.6 0.0016 3.4E-08 72.5 4.1 39 39-77 158-197 (738)
256 KOG2614 Kynurenine 3-monooxyge 96.6 0.0015 3.2E-08 66.0 3.4 33 41-73 2-35 (420)
257 PLN02328 lysine-specific histo 96.6 0.0017 3.8E-08 72.7 4.3 39 39-77 236-275 (808)
258 PRK12810 gltD glutamate syntha 96.6 0.002 4.4E-08 69.1 4.5 38 39-76 141-179 (471)
259 COG1232 HemY Protoporphyrinoge 96.6 0.0017 3.7E-08 67.7 3.7 34 44-77 3-39 (444)
260 PF00996 GDI: GDP dissociation 96.6 0.0016 3.4E-08 68.0 3.2 42 38-79 1-43 (438)
261 PLN02612 phytoene desaturase 96.5 0.0023 4.9E-08 70.1 4.3 38 40-77 92-130 (567)
262 TIGR01316 gltA glutamate synth 96.5 0.0024 5.3E-08 68.0 4.2 37 39-75 131-168 (449)
263 PF00070 Pyr_redox: Pyridine n 96.5 0.0028 6.2E-08 49.7 3.4 32 44-75 2-34 (80)
264 TIGR02732 zeta_caro_desat caro 96.4 0.0022 4.8E-08 68.7 3.6 65 212-282 225-289 (474)
265 KOG0685 Flavin-containing amin 96.4 0.0031 6.8E-08 64.7 3.9 37 41-77 21-59 (498)
266 TIGR03219 salicylate_mono sali 96.3 0.0027 5.8E-08 67.0 3.5 32 43-74 2-35 (414)
267 PRK11749 dihydropyrimidine deh 96.3 0.0035 7.6E-08 67.0 4.4 37 39-75 138-175 (457)
268 PRK12769 putative oxidoreducta 96.3 0.0033 7.1E-08 70.3 4.1 37 40-76 326-363 (654)
269 PRK12779 putative bifunctional 96.3 0.0029 6.2E-08 73.0 3.6 38 40-77 305-343 (944)
270 PRK09853 putative selenate red 96.3 0.0037 8.1E-08 71.4 4.3 37 40-76 538-575 (1019)
271 PLN02852 ferredoxin-NADP+ redu 96.3 0.0047 1E-07 65.8 4.7 38 39-76 24-64 (491)
272 PRK12775 putative trifunctiona 96.3 0.0033 7.2E-08 73.1 3.9 37 40-76 429-466 (1006)
273 PRK12778 putative bifunctional 96.2 0.0041 9E-08 70.7 4.4 35 40-74 430-465 (752)
274 KOG3855 Monooxygenase involved 96.2 0.0044 9.4E-08 62.4 3.8 37 38-74 33-74 (481)
275 PLN02487 zeta-carotene desatur 96.2 0.0052 1.1E-07 66.9 4.7 65 212-282 301-365 (569)
276 PRK14989 nitrite reductase sub 96.2 0.076 1.7E-06 60.9 14.1 62 213-287 194-255 (847)
277 TIGR02374 nitri_red_nirB nitri 96.1 0.044 9.6E-07 62.5 12.0 60 213-287 189-248 (785)
278 PRK12770 putative glutamate sy 96.0 0.0069 1.5E-07 62.3 4.4 46 28-75 7-53 (352)
279 TIGR01350 lipoamide_DH dihydro 96.0 0.035 7.6E-07 59.5 9.8 32 42-73 171-203 (461)
280 PRK12814 putative NADPH-depend 96.0 0.0069 1.5E-07 67.5 4.5 37 40-76 192-229 (652)
281 PLN03000 amine oxidase 95.9 0.0061 1.3E-07 68.5 3.9 38 40-77 183-221 (881)
282 KOG2311 NAD/FAD-utilizing prot 95.9 0.0068 1.5E-07 62.0 3.7 34 39-72 26-60 (679)
283 PLN02976 amine oxidase 95.9 0.0071 1.5E-07 70.6 4.2 39 39-77 691-730 (1713)
284 TIGR01318 gltD_gamma_fam gluta 95.8 0.0086 1.9E-07 64.1 4.1 36 40-75 140-176 (467)
285 PRK07818 dihydrolipoamide dehy 95.6 0.068 1.5E-06 57.3 10.3 53 217-280 224-276 (466)
286 TIGR01317 GOGAT_sm_gam glutama 95.6 0.012 2.5E-07 63.4 4.2 35 41-75 143-178 (485)
287 PRK08255 salicylyl-CoA 5-hydro 95.6 0.0084 1.8E-07 68.2 3.3 32 43-74 2-36 (765)
288 PRK06567 putative bifunctional 95.5 0.011 2.4E-07 67.0 3.7 35 40-74 382-417 (1028)
289 PRK12809 putative oxidoreducta 95.4 0.013 2.8E-07 65.4 4.0 37 40-76 309-346 (639)
290 PTZ00188 adrenodoxin reductase 95.4 0.014 3.1E-07 61.5 3.8 37 41-77 39-77 (506)
291 PRK06327 dihydrolipoamide dehy 95.4 0.08 1.7E-06 56.9 9.7 52 218-280 236-287 (475)
292 PRK05976 dihydrolipoamide dehy 95.3 0.12 2.5E-06 55.6 10.8 31 43-73 182-213 (472)
293 PRK12831 putative oxidoreducta 95.2 0.12 2.5E-06 55.4 10.3 30 43-72 283-313 (464)
294 PRK12771 putative glutamate sy 95.2 0.016 3.4E-07 63.7 3.7 37 40-76 136-173 (564)
295 COG4529 Uncharacterized protei 95.1 0.11 2.4E-06 54.0 9.3 33 42-74 2-38 (474)
296 TIGR01316 gltA glutamate synth 95.1 0.17 3.7E-06 53.9 11.1 31 43-73 274-305 (449)
297 PRK15317 alkyl hydroperoxide r 95.0 0.3 6.4E-06 53.1 12.7 57 219-285 400-457 (517)
298 PRK13984 putative oxidoreducta 94.9 0.027 5.8E-07 62.5 4.6 38 39-76 281-319 (604)
299 PRK09564 coenzyme A disulfide 94.8 0.18 3.9E-06 53.6 10.4 32 42-73 150-182 (444)
300 KOG1276 Protoporphyrinogen oxi 94.7 0.038 8.3E-07 56.1 4.5 39 39-77 9-50 (491)
301 TIGR03140 AhpF alkyl hydropero 94.7 0.42 9.1E-06 51.9 13.0 55 219-283 401-456 (515)
302 PRK09564 coenzyme A disulfide 94.4 0.032 7E-07 59.4 3.6 59 213-287 198-256 (444)
303 PRK13512 coenzyme A disulfide 94.4 0.034 7.3E-07 59.1 3.6 33 43-75 3-38 (438)
304 PRK10262 thioredoxin reductase 94.2 0.65 1.4E-05 47.0 12.4 60 217-287 196-257 (321)
305 KOG4405 GDP dissociation inhib 94.2 0.053 1.2E-06 54.6 4.1 41 39-79 6-47 (547)
306 KOG1439 RAB proteins geranylge 94.1 0.035 7.5E-07 55.9 2.7 42 39-80 2-44 (440)
307 KOG2403 Succinate dehydrogenas 94.0 0.1 2.3E-06 54.7 5.9 33 40-72 54-87 (642)
308 PTZ00318 NADH dehydrogenase-li 93.9 0.06 1.3E-06 57.0 4.4 37 39-75 8-45 (424)
309 KOG1800 Ferredoxin/adrenodoxin 93.6 0.076 1.7E-06 53.2 4.1 35 43-77 22-59 (468)
310 COG3486 IucD Lysine/ornithine 93.5 0.52 1.1E-05 48.0 9.8 38 38-75 2-41 (436)
311 COG5044 MRS6 RAB proteins gera 93.4 0.091 2E-06 52.4 4.2 40 40-79 5-45 (434)
312 KOG3851 Sulfide:quinone oxidor 92.7 0.15 3.3E-06 49.9 4.5 38 38-75 36-76 (446)
313 COG1206 Gid NAD(FAD)-utilizing 92.7 0.16 3.5E-06 49.9 4.7 32 43-74 5-37 (439)
314 TIGR03169 Nterm_to_SelD pyridi 92.6 0.12 2.6E-06 53.5 4.1 32 44-75 2-37 (364)
315 COG0493 GltD NADPH-dependent g 92.2 0.14 3E-06 54.2 3.9 35 42-76 124-159 (457)
316 PRK11749 dihydropyrimidine deh 91.6 1.1 2.5E-05 47.8 10.2 30 43-72 275-306 (457)
317 PRK05329 anaerobic glycerol-3- 91.4 0.4 8.6E-06 50.4 6.3 58 212-281 265-322 (422)
318 KOG0404 Thioredoxin reductase 90.9 0.19 4.2E-06 46.6 2.8 30 43-72 10-40 (322)
319 COG0446 HcaD Uncharacterized N 90.8 0.19 4.2E-06 52.5 3.3 35 42-76 137-172 (415)
320 PRK12778 putative bifunctional 90.7 1.1 2.4E-05 51.1 9.5 31 43-73 572-604 (752)
321 PF02558 ApbA: Ketopantoate re 90.1 0.23 5E-06 44.0 2.7 30 44-73 1-31 (151)
322 KOG0399 Glutamate synthase [Am 89.9 0.42 9.1E-06 54.3 4.9 38 40-77 1784-1822(2142)
323 KOG2755 Oxidoreductase [Genera 89.8 0.12 2.7E-06 49.1 0.7 33 44-76 2-37 (334)
324 COG4716 Myosin-crossreactive a 89.7 1.2 2.7E-05 44.7 7.5 57 214-276 235-291 (587)
325 COG0569 TrkA K+ transport syst 89.4 0.32 7E-06 46.4 3.2 32 43-74 2-34 (225)
326 COG1252 Ndh NADH dehydrogenase 89.1 0.36 7.7E-06 50.0 3.5 34 43-76 5-41 (405)
327 PRK09754 phenylpropionate diox 88.5 0.4 8.6E-06 50.2 3.5 33 43-75 146-179 (396)
328 TIGR02733 desat_CrtD C-3',4' d 88.3 1.1 2.3E-05 48.5 6.8 69 203-281 229-298 (492)
329 PF13434 K_oxygenase: L-lysine 87.8 1.6 3.4E-05 44.6 7.2 36 39-74 188-226 (341)
330 PRK07251 pyridine nucleotide-d 87.2 0.51 1.1E-05 50.1 3.5 33 43-75 159-192 (438)
331 PRK04965 NADH:flavorubredoxin 87.2 0.54 1.2E-05 48.8 3.5 34 42-75 142-176 (377)
332 PF13738 Pyr_redox_3: Pyridine 87.1 0.52 1.1E-05 43.9 3.0 33 42-74 168-201 (203)
333 PF01210 NAD_Gly3P_dh_N: NAD-d 87.0 0.46 1E-05 42.6 2.5 30 44-73 2-32 (157)
334 PF03721 UDPG_MGDP_dh_N: UDP-g 86.7 0.7 1.5E-05 42.7 3.6 30 44-73 3-33 (185)
335 PRK05708 2-dehydropantoate 2-r 86.6 0.57 1.2E-05 47.1 3.2 31 43-73 4-35 (305)
336 PRK07846 mycothione reductase; 86.4 0.62 1.3E-05 49.7 3.5 33 42-74 167-200 (451)
337 PRK06567 putative bifunctional 86.1 2 4.4E-05 49.4 7.4 54 215-277 649-728 (1028)
338 TIGR02053 MerA mercuric reduct 86.0 0.64 1.4E-05 49.8 3.4 33 42-74 167-200 (463)
339 PRK06912 acoL dihydrolipoamide 86.0 0.67 1.5E-05 49.5 3.6 32 43-74 172-204 (458)
340 PRK06467 dihydrolipoamide dehy 85.7 0.67 1.5E-05 49.7 3.4 33 43-75 176-209 (471)
341 TIGR01421 gluta_reduc_1 glutat 85.7 0.68 1.5E-05 49.4 3.4 33 43-75 168-201 (450)
342 PF02737 3HCDH_N: 3-hydroxyacy 85.2 0.72 1.6E-05 42.4 2.9 30 44-73 2-32 (180)
343 COG1249 Lpd Pyruvate/2-oxoglut 85.1 0.78 1.7E-05 48.6 3.4 33 43-75 175-208 (454)
344 PRK06370 mercuric reductase; V 84.8 0.81 1.8E-05 49.0 3.5 34 42-75 172-206 (463)
345 COG1252 Ndh NADH dehydrogenase 84.5 0.73 1.6E-05 47.7 2.8 35 41-75 155-203 (405)
346 PRK06416 dihydrolipoamide dehy 84.2 0.9 1.9E-05 48.6 3.5 33 43-75 174-207 (462)
347 PRK06115 dihydrolipoamide dehy 84.2 0.92 2E-05 48.6 3.6 33 43-75 176-209 (466)
348 TIGR03385 CoA_CoA_reduc CoA-di 84.0 0.91 2E-05 48.0 3.4 32 43-74 139-171 (427)
349 PRK01438 murD UDP-N-acetylmura 83.9 0.9 1.9E-05 48.9 3.4 31 43-73 18-49 (480)
350 PRK06249 2-dehydropantoate 2-r 83.9 0.96 2.1E-05 45.7 3.4 31 43-73 7-38 (313)
351 PRK05249 soluble pyridine nucl 83.3 1 2.2E-05 48.2 3.5 33 43-75 177-210 (461)
352 PRK13512 coenzyme A disulfide 83.3 0.95 2.1E-05 48.1 3.2 32 43-74 150-182 (438)
353 PRK06292 dihydrolipoamide dehy 83.0 1.1 2.3E-05 48.0 3.5 33 43-75 171-204 (460)
354 PRK02705 murD UDP-N-acetylmura 82.9 1 2.2E-05 48.1 3.4 31 44-74 3-34 (459)
355 TIGR02732 zeta_caro_desat caro 82.9 2.2 4.9E-05 45.7 5.9 35 43-77 1-36 (474)
356 PF01593 Amino_oxidase: Flavin 82.6 0.89 1.9E-05 47.6 2.7 27 51-77 1-28 (450)
357 TIGR03452 mycothione_red mycot 82.6 1.1 2.4E-05 47.8 3.4 33 42-74 170-203 (452)
358 PLN02487 zeta-carotene desatur 82.5 2.6 5.7E-05 46.1 6.2 37 41-77 75-112 (569)
359 TIGR01424 gluta_reduc_2 glutat 82.2 1.2 2.6E-05 47.5 3.4 32 43-74 168-200 (446)
360 PRK12921 2-dehydropantoate 2-r 82.1 1.1 2.5E-05 44.8 3.1 28 44-71 3-31 (305)
361 PF02254 TrkA_N: TrkA-N domain 82.1 1.2 2.7E-05 37.2 2.9 30 44-73 1-31 (116)
362 PRK04148 hypothetical protein; 81.8 1.4 3.1E-05 38.0 3.1 31 43-74 19-50 (134)
363 KOG2018 Predicted dinucleotide 81.7 0.76 1.6E-05 44.8 1.5 27 44-70 77-105 (430)
364 PRK06522 2-dehydropantoate 2-r 81.6 1.3 2.8E-05 44.4 3.2 29 44-72 3-32 (304)
365 PTZ00153 lipoamide dehydrogena 81.1 1.4 3.1E-05 49.1 3.6 33 43-75 314-347 (659)
366 PTZ00058 glutathione reductase 81.0 1.4 3E-05 48.3 3.4 33 42-74 238-271 (561)
367 PRK06129 3-hydroxyacyl-CoA deh 80.8 1.3 2.7E-05 44.7 2.9 31 43-73 4-35 (308)
368 PF13241 NAD_binding_7: Putati 80.6 1 2.2E-05 37.1 1.8 31 42-72 8-39 (103)
369 TIGR03143 AhpF_homolog putativ 80.4 1.4 3.1E-05 48.3 3.3 31 43-73 145-176 (555)
370 PF01488 Shikimate_DH: Shikima 80.3 1.5 3.2E-05 38.2 2.8 31 42-72 13-45 (135)
371 PLN02507 glutathione reductase 80.2 1.5 3.3E-05 47.4 3.4 32 43-74 205-237 (499)
372 PRK06116 glutathione reductase 80.1 1.6 3.4E-05 46.5 3.5 33 42-74 168-201 (450)
373 PRK06718 precorrin-2 dehydroge 80.1 1.6 3.6E-05 40.8 3.2 29 43-71 12-41 (202)
374 PRK07845 flavoprotein disulfid 80.0 1.6 3.6E-05 46.7 3.6 33 43-75 179-212 (466)
375 PRK06719 precorrin-2 dehydroge 79.8 1.7 3.8E-05 38.8 3.1 28 43-70 15-43 (157)
376 TIGR02374 nitri_red_nirB nitri 79.6 1.5 3.4E-05 50.1 3.4 33 43-75 142-175 (785)
377 PRK14106 murD UDP-N-acetylmura 79.4 1.6 3.5E-05 46.5 3.3 31 43-73 7-38 (450)
378 PRK08010 pyridine nucleotide-d 78.9 1.9 4E-05 45.9 3.6 32 43-74 160-192 (441)
379 PLN02546 glutathione reductase 78.3 1.8 3.9E-05 47.4 3.2 32 43-74 254-286 (558)
380 COG0686 Ald Alanine dehydrogen 78.2 2.3 5E-05 41.9 3.5 35 39-73 166-201 (371)
381 PF00899 ThiF: ThiF family; I 78.0 2.2 4.7E-05 37.0 3.1 32 43-74 4-37 (135)
382 PRK14989 nitrite reductase sub 78.0 1.9 4.1E-05 49.7 3.5 33 43-75 147-180 (847)
383 PF01262 AlaDh_PNT_C: Alanine 78.0 1.9 4.2E-05 39.0 2.9 33 41-73 20-53 (168)
384 PRK13748 putative mercuric red 77.9 1.9 4.1E-05 47.5 3.3 31 43-73 272-303 (561)
385 COG1004 Ugd Predicted UDP-gluc 77.7 2.1 4.6E-05 43.7 3.3 30 44-73 3-33 (414)
386 TIGR00518 alaDH alanine dehydr 77.7 1.9 4.1E-05 44.6 3.1 33 41-73 167-200 (370)
387 PRK08293 3-hydroxybutyryl-CoA 77.7 2 4.3E-05 42.7 3.2 31 43-73 5-36 (287)
388 PRK09260 3-hydroxybutyryl-CoA 77.5 1.8 3.8E-05 43.1 2.7 30 44-73 4-34 (288)
389 PRK12475 thiamine/molybdopteri 77.5 2.6 5.7E-05 42.9 4.0 36 41-76 24-61 (338)
390 PRK14694 putative mercuric red 77.5 2.3 4.9E-05 45.6 3.7 31 43-73 180-211 (468)
391 TIGR01470 cysG_Nterm siroheme 77.4 2.1 4.6E-05 40.1 3.1 29 43-71 11-40 (205)
392 PRK14727 putative mercuric red 77.3 2 4.3E-05 46.2 3.2 30 43-72 190-220 (479)
393 KOG3923 D-aspartate oxidase [A 77.2 2.5 5.4E-05 41.4 3.4 32 41-72 3-42 (342)
394 cd01080 NAD_bind_m-THF_DH_Cycl 77.1 2.8 6.2E-05 37.9 3.7 33 40-72 43-77 (168)
395 PRK15116 sulfur acceptor prote 77.1 2.4 5.3E-05 41.4 3.5 36 41-76 30-67 (268)
396 cd01075 NAD_bind_Leu_Phe_Val_D 76.8 2.3 5E-05 39.7 3.2 30 43-72 30-60 (200)
397 TIGR02354 thiF_fam2 thiamine b 76.6 2.5 5.3E-05 39.6 3.3 33 41-73 21-55 (200)
398 COG2072 TrkA Predicted flavopr 76.4 3 6.4E-05 44.3 4.2 34 42-75 176-210 (443)
399 PRK08229 2-dehydropantoate 2-r 76.3 2.3 4.9E-05 43.5 3.2 30 43-72 4-34 (341)
400 PRK12770 putative glutamate sy 76.3 2.2 4.9E-05 43.7 3.2 31 43-73 174-206 (352)
401 PLN02612 phytoene desaturase 76.1 4.5 9.9E-05 44.5 5.7 50 213-275 315-364 (567)
402 PRK07066 3-hydroxybutyryl-CoA 75.9 2.5 5.5E-05 42.6 3.4 30 44-73 10-40 (321)
403 COG1893 ApbA Ketopantoate redu 75.7 2.3 5E-05 42.7 3.0 30 44-73 3-33 (307)
404 PRK07688 thiamine/molybdopteri 75.6 2.5 5.5E-05 43.0 3.3 35 41-75 24-60 (339)
405 cd01483 E1_enzyme_family Super 75.5 3.3 7.1E-05 36.2 3.6 32 44-75 2-35 (143)
406 PRK07819 3-hydroxybutyryl-CoA 75.0 2.5 5.4E-05 42.0 3.0 31 43-73 7-38 (286)
407 PLN02172 flavin-containing mon 74.6 3.1 6.7E-05 44.5 3.8 31 43-73 206-237 (461)
408 cd00401 AdoHcyase S-adenosyl-L 74.6 2.7 5.9E-05 43.9 3.2 31 43-73 204-235 (413)
409 TIGR02355 moeB molybdopterin s 74.5 3.8 8.2E-05 39.5 4.0 36 41-76 24-61 (240)
410 TIGR01292 TRX_reduct thioredox 74.4 12 0.00026 37.0 7.8 61 214-285 184-246 (300)
411 COG1748 LYS9 Saccharopine dehy 74.3 3.1 6.7E-05 42.9 3.5 31 43-73 3-35 (389)
412 cd05311 NAD_bind_2_malic_enz N 74.1 2.6 5.5E-05 40.3 2.7 31 43-73 27-61 (226)
413 PRK14620 NAD(P)H-dependent gly 74.1 2.7 5.9E-05 42.6 3.1 29 44-72 3-32 (326)
414 PRK12549 shikimate 5-dehydroge 73.9 3 6.6E-05 41.3 3.3 32 42-73 128-161 (284)
415 PRK06035 3-hydroxyacyl-CoA deh 73.8 2.9 6.2E-05 41.7 3.1 30 44-73 6-36 (291)
416 TIGR01438 TGR thioredoxin and 73.8 2.5 5.5E-05 45.5 2.9 30 43-72 182-212 (484)
417 cd01487 E1_ThiF_like E1_ThiF_l 73.5 3.4 7.3E-05 37.7 3.2 32 44-75 2-35 (174)
418 PTZ00052 thioredoxin reductase 73.2 2.8 6.1E-05 45.3 3.1 30 43-72 184-214 (499)
419 cd01486 Apg7 Apg7 is an E1-lik 73.1 3.9 8.4E-05 40.5 3.7 34 44-77 2-37 (307)
420 PRK07530 3-hydroxybutyryl-CoA 73.1 3 6.6E-05 41.5 3.1 31 43-73 6-37 (292)
421 TIGR01381 E1_like_apg7 E1-like 73.0 3.5 7.5E-05 45.1 3.6 40 41-80 338-379 (664)
422 PF13478 XdhC_C: XdhC Rossmann 72.7 3.8 8.3E-05 35.6 3.2 31 44-74 1-32 (136)
423 PRK07233 hypothetical protein; 72.0 5.5 0.00012 41.9 5.0 65 203-282 195-259 (434)
424 TIGR01423 trypano_reduc trypan 72.0 3.5 7.5E-05 44.4 3.4 33 43-75 189-225 (486)
425 TIGR01763 MalateDH_bact malate 72.0 3.6 7.8E-05 41.3 3.3 28 44-71 4-33 (305)
426 PRK14618 NAD(P)H-dependent gly 71.3 3.6 7.9E-05 41.7 3.3 31 43-73 6-37 (328)
427 PRK05808 3-hydroxybutyryl-CoA 70.7 3.5 7.6E-05 40.8 2.9 31 43-73 5-36 (282)
428 COG3075 GlpB Anaerobic glycero 70.6 3.9 8.4E-05 40.7 3.0 55 215-281 267-321 (421)
429 PRK08328 hypothetical protein; 70.5 4.2 9.2E-05 39.0 3.3 34 41-74 27-62 (231)
430 TIGR02853 spore_dpaA dipicolin 70.5 3.7 8E-05 40.8 3.0 31 43-73 153-184 (287)
431 PTZ00318 NADH dehydrogenase-li 70.4 4.2 9E-05 43.0 3.6 33 43-75 175-222 (424)
432 TIGR02356 adenyl_thiF thiazole 70.3 4.2 9.2E-05 38.0 3.2 35 41-75 21-57 (202)
433 TIGR00936 ahcY adenosylhomocys 70.2 4 8.7E-05 42.5 3.3 31 43-73 197-228 (406)
434 PRK12548 shikimate 5-dehydroge 70.2 3.8 8.3E-05 40.7 3.1 31 43-73 128-160 (289)
435 TIGR03026 NDP-sugDHase nucleot 69.9 4.6 0.0001 42.4 3.8 30 44-73 3-33 (411)
436 PRK08644 thiamine biosynthesis 69.2 5 0.00011 37.9 3.4 34 41-74 28-63 (212)
437 PRK06130 3-hydroxybutyryl-CoA 69.0 4.2 9.2E-05 40.9 3.1 31 43-73 6-37 (311)
438 TIGR03736 PRTRC_ThiF PRTRC sys 69.0 5.2 0.00011 38.6 3.5 36 39-74 9-56 (244)
439 cd05292 LDH_2 A subgroup of L- 69.0 4.6 9.9E-05 40.6 3.4 31 43-73 2-35 (308)
440 cd00757 ThiF_MoeB_HesA_family 68.8 4.8 0.0001 38.5 3.3 34 41-74 21-56 (228)
441 PRK08223 hypothetical protein; 68.6 5.9 0.00013 39.1 3.9 36 41-76 27-64 (287)
442 PRK11064 wecC UDP-N-acetyl-D-m 68.2 4.9 0.00011 42.3 3.5 31 43-73 5-36 (415)
443 cd01484 E1-2_like Ubiquitin ac 68.1 4.9 0.00011 38.6 3.2 32 44-75 2-35 (234)
444 PRK02472 murD UDP-N-acetylmura 68.0 4.3 9.3E-05 43.2 3.1 30 44-73 8-38 (447)
445 PRK00094 gpsA NAD(P)H-dependen 67.5 4.9 0.00011 40.6 3.3 31 43-73 3-34 (325)
446 PRK06153 hypothetical protein; 67.4 6.8 0.00015 40.3 4.1 36 41-76 176-213 (393)
447 PLN02545 3-hydroxybutyryl-CoA 67.2 5.2 0.00011 39.9 3.3 30 44-73 7-37 (295)
448 PRK05690 molybdopterin biosynt 67.2 5.2 0.00011 38.7 3.2 35 41-75 32-68 (245)
449 PRK05476 S-adenosyl-L-homocyst 67.0 5.2 0.00011 42.0 3.3 31 43-73 214-245 (425)
450 cd05291 HicDH_like L-2-hydroxy 67.0 5.3 0.00011 40.1 3.3 30 44-73 3-35 (306)
451 COG3634 AhpF Alkyl hydroperoxi 66.8 4.9 0.00011 40.2 2.9 34 41-74 354-388 (520)
452 PLN02494 adenosylhomocysteinas 66.7 5.6 0.00012 42.1 3.5 31 43-73 256-287 (477)
453 PF00670 AdoHcyase_NAD: S-aden 66.7 4.4 9.5E-05 36.2 2.3 31 43-73 25-56 (162)
454 PLN02520 bifunctional 3-dehydr 65.7 5.4 0.00012 43.4 3.3 30 43-72 381-411 (529)
455 cd01490 Ube1_repeat2 Ubiquitin 65.6 7.2 0.00016 40.9 4.1 33 44-76 2-41 (435)
456 KOG1346 Programmed cell death 65.3 34 0.00073 35.4 8.4 140 33-283 170-315 (659)
457 PRK12810 gltD glutamate syntha 65.2 14 0.00029 39.7 6.3 62 215-286 338-410 (471)
458 TIGR01915 npdG NADPH-dependent 65.2 6.1 0.00013 37.4 3.2 30 44-73 3-34 (219)
459 cd01485 E1-1_like Ubiquitin ac 65.1 8.2 0.00018 36.0 4.0 34 41-74 19-54 (198)
460 cd01489 Uba2_SUMO Ubiquitin ac 64.8 7.3 0.00016 39.1 3.8 32 44-75 2-35 (312)
461 COG1179 Dinucleotide-utilizing 64.6 8.1 0.00018 36.8 3.7 36 42-77 31-68 (263)
462 PRK09424 pntA NAD(P) transhydr 64.6 5.7 0.00012 42.7 3.1 33 41-73 165-198 (509)
463 PRK08306 dipicolinate synthase 64.4 6.1 0.00013 39.5 3.1 32 42-73 153-185 (296)
464 PRK14619 NAD(P)H-dependent gly 64.1 6.8 0.00015 39.4 3.5 30 43-72 6-36 (308)
465 PLN02353 probable UDP-glucose 64.0 6.4 0.00014 42.1 3.4 31 43-73 3-36 (473)
466 cd01492 Aos1_SUMO Ubiquitin ac 63.7 7 0.00015 36.4 3.2 33 41-73 21-55 (197)
467 cd01488 Uba3_RUB Ubiquitin act 63.7 8 0.00017 38.4 3.8 32 44-75 2-35 (291)
468 cd05191 NAD_bind_amino_acid_DH 63.3 8.2 0.00018 30.4 3.2 29 43-71 25-55 (86)
469 PRK10669 putative cation:proto 63.3 7.7 0.00017 42.6 4.0 33 41-73 417-450 (558)
470 COG3486 IucD Lysine/ornithine 62.6 18 0.00038 37.3 5.9 56 217-282 289-346 (436)
471 PTZ00075 Adenosylhomocysteinas 62.5 7.1 0.00015 41.4 3.3 31 43-73 256-287 (476)
472 PRK14027 quinate/shikimate deh 62.4 7.4 0.00016 38.5 3.3 31 43-73 129-161 (283)
473 cd01339 LDH-like_MDH L-lactate 62.3 6.3 0.00014 39.4 2.8 30 44-73 1-32 (300)
474 TIGR00507 aroE shikimate 5-deh 62.2 7.4 0.00016 38.3 3.3 31 43-73 119-150 (270)
475 COG1250 FadB 3-hydroxyacyl-CoA 62.1 8 0.00017 38.6 3.5 30 44-73 6-36 (307)
476 PRK09496 trkA potassium transp 62.0 6.7 0.00015 41.7 3.2 31 43-73 2-33 (453)
477 PRK11730 fadB multifunctional 61.9 7.2 0.00016 44.2 3.5 31 43-73 315-346 (715)
478 KOG2304 3-hydroxyacyl-CoA dehy 61.9 10 0.00022 35.6 3.8 33 41-73 11-44 (298)
479 PRK08762 molybdopterin biosynt 61.8 7.4 0.00016 40.3 3.4 35 41-75 135-171 (376)
480 cd00755 YgdL_like Family of ac 61.4 7.5 0.00016 37.2 3.1 32 42-73 12-45 (231)
481 TIGR02032 GG-red-SF geranylger 61.3 18 0.00039 35.5 6.0 51 212-276 97-147 (295)
482 PTZ00082 L-lactate dehydrogena 61.2 8.5 0.00018 38.9 3.5 32 43-74 8-41 (321)
483 TIGR02279 PaaC-3OHAcCoADH 3-hy 61.1 7 0.00015 42.2 3.1 30 44-73 8-38 (503)
484 PRK12550 shikimate 5-dehydroge 61.0 7.5 0.00016 38.2 3.1 31 43-73 124-156 (272)
485 PRK05597 molybdopterin biosynt 60.9 8.7 0.00019 39.5 3.6 36 41-76 28-65 (355)
486 TIGR02437 FadB fatty oxidation 60.8 7.6 0.00017 43.9 3.5 31 43-73 315-346 (714)
487 KOG2495 NADH-dehydrogenase (ub 60.5 4.6 0.0001 41.6 1.5 30 44-73 221-265 (491)
488 PRK06223 malate dehydrogenase; 60.0 8.6 0.00019 38.6 3.4 30 43-72 4-35 (307)
489 PRK08017 oxidoreductase; Provi 60.0 9.1 0.0002 36.8 3.5 30 44-73 5-36 (256)
490 PRK05600 thiamine biosynthesis 59.6 8.3 0.00018 39.8 3.2 35 41-75 41-77 (370)
491 PRK07417 arogenate dehydrogena 59.5 7.8 0.00017 38.3 2.9 29 44-72 3-32 (279)
492 TIGR01809 Shik-DH-AROM shikima 59.3 8.8 0.00019 38.0 3.3 31 42-72 126-158 (282)
493 PRK05562 precorrin-2 dehydroge 59.1 9.1 0.0002 36.3 3.1 29 42-70 26-55 (223)
494 PRK00066 ldh L-lactate dehydro 59.0 9.2 0.0002 38.6 3.4 31 42-72 7-40 (315)
495 cd01078 NAD_bind_H4MPT_DH NADP 58.9 10 0.00022 35.1 3.4 30 43-72 30-61 (194)
496 PRK00258 aroE shikimate 5-dehy 58.7 8.5 0.00018 38.0 3.0 32 42-73 124-157 (278)
497 PRK15057 UDP-glucose 6-dehydro 58.3 9.4 0.0002 39.8 3.4 30 44-73 3-32 (388)
498 PF03807 F420_oxidored: NADP o 58.3 8.2 0.00018 30.9 2.4 30 44-73 2-36 (96)
499 PRK07411 hypothetical protein; 58.2 11 0.00024 39.3 3.9 36 41-76 38-75 (390)
500 COG2085 Predicted dinucleotide 58.1 9.8 0.00021 35.5 3.1 29 44-72 4-33 (211)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=3.2e-85 Score=703.87 Aligned_cols=539 Identities=55% Similarity=0.927 Sum_probs=407.9
Q ss_pred CcceeeecccCCCC----------CCcccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCCCcccccccccccCCC
Q 008331 25 PYYTFVKDATSAPL----------ISYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDP 94 (570)
Q Consensus 25 ~~~~~~~~~~~~~~----------~~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~ 94 (570)
+.+.|+.++.+.+. ..+|||||||+|.+||++|.+|+++.+|||||+|+....++....+..+.....+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~~~~~~d~ 108 (587)
T PLN02785 29 YRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADT 108 (587)
T ss_pred cCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhhCCccccc
Confidence 35788888888776 66899999999999999999999988999999998643334443344443344567
Q ss_pred CCCCCCcccccCCcccccCCceeccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHH
Q 008331 95 SPTSPSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGL 174 (570)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (570)
.+.+.++.+..++++.+.|||+|||+|.+|+|+|.|++++++++.||+|+.+.++|++.|+.+...|...++...+.+++
T Consensus 109 ~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~ 188 (587)
T PLN02785 109 SPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSL 188 (587)
T ss_pred CCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHHHHHHH
Confidence 78777777778889999999999999999999999999998888899999999999999987655666678889999999
Q ss_pred HHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCC
Q 008331 175 LEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVG 254 (570)
Q Consensus 175 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G 254 (570)
.++|+++++++..+...|...+.+.++..|.|+++..+++.+.+.|++|++++.|++|++++++ ...+++||++.+.+|
T Consensus 189 ~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~g 267 (587)
T PLN02785 189 LEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDENG 267 (587)
T ss_pred HHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECCC
Confidence 9999988887777777666677777777789999888888778899999999999999998642 223899999998778
Q ss_pred ceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCcccchhhhh
Q 008331 255 ARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEVSLVQV 334 (570)
Q Consensus 255 ~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~ 334 (570)
..+++.+..+++++||||||+|+||+|||+|||||+++|+++||+++.|+|.||+||+|||...+.+..+.+......+.
T Consensus 268 ~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~ 347 (587)
T PLN02785 268 NQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQT 347 (587)
T ss_pred ceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHhh
Confidence 75554322225689999999999999999999999999999999999999999999999999888877665543222232
Q ss_pred hcccchhhhHhhhcCCccCcCc----cccccccccccccccCCCCCCChHHHHHHhHhhhccCCCceeeEEEEeeccccc
Q 008331 335 VGITRFDSYIETASGLSLAPSW----AQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVNSYLNGTIRAGVIVEKIMGPR 410 (570)
Q Consensus 335 ~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 410 (570)
++....+.|.....+....... ...+....+.+ ...++....++.+..++......+...+....+...+..|.
T Consensus 348 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~ 425 (587)
T PLN02785 348 VGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQL--STIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPI 425 (587)
T ss_pred hhhhccccceecccccccCchhhhhhccccccccccc--cccCcccccchhhhhhccCcccccccccccceEEEEecCCC
Confidence 2222222332221111000000 00000000000 01122222222222222111111111121123456778999
Q ss_pred ccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCc-chhHHhhhhccCCCCCCCCCCCC
Q 008331 411 STGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDV-SVQELIDLMVNIPTNLRPRHVVG 489 (570)
Q Consensus 411 s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~ 489 (570)
|||+|+|.++||.+.|.|+++|+.+|.|++.+.++++.+++++++..+..+...+. +..++....+..+.+..|+. .+
T Consensus 426 SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~ 504 (587)
T PLN02785 426 STGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKH-TN 504 (587)
T ss_pred cceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCC-CC
Confidence 99999999999999999999999999999999999999999999988877653321 11112111122223344553 46
Q ss_pred CHHHHHHHHHhcccccccccccccCCcccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccccC
Q 008331 490 ASISLEQFCRDTVMTIWHYHGGCQVDRVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR 567 (570)
Q Consensus 490 ~~~~i~~~~~~~~~~~~H~~GTc~MG~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~ 567 (570)
+++++++|+++...+.||++|||+||+|||+++||||++||||||+|+||..|++||++|+||||+|+|++|++++++
T Consensus 505 ~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~ 582 (587)
T PLN02785 505 DTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLG 582 (587)
T ss_pred CHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhh
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=2.4e-82 Score=653.54 Aligned_cols=506 Identities=39% Similarity=0.563 Sum_probs=382.3
Q ss_pred eeecccCCCCCCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCCCCCcccccc----cccccCCCCCCCCCcc
Q 008331 29 FVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYENPNITDTGN----FATTLLDPSPTSPSQQ 102 (570)
Q Consensus 29 ~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 102 (570)
++.+....+...+||+||||||.|||++|.+|+| ..||||||+|+... ...++.. +.....+|.|.+.++.
T Consensus 45 ~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~---~~~~~p~~~~~~q~s~~dw~y~t~Ps~ 121 (623)
T KOG1238|consen 45 RPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPP---LYSDPPLLAANLQLSLYDWSYHTEPSQ 121 (623)
T ss_pred ccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCc---ccccchHHHHHhccccccccCcCccCh
Confidence 3344444456779999999999999999999999 69999999998762 1222222 2223447888877766
Q ss_pred c----ccCCcccccCCceeccccccCceeeeCCCh----hhhhh--CCCChhhhhhhhHHHHhhccCCCC----------
Q 008331 103 F----ISEDGVYNARARVLGGGSVINAGFYTRASL----RYVRE--VGWTESLVNSSYEWVEKKVAHEPP---------- 162 (570)
Q Consensus 103 ~----~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~----~~~~~--~gw~~~~l~~~~~~~~~~~~~~~~---------- 162 (570)
. ..++...++|||++||+|.+|+|+|.|+.+ +|.+. +||+|+++.+||+|.|+.....++
T Consensus 122 ~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~ 201 (623)
T KOG1238|consen 122 HACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGP 201 (623)
T ss_pred hhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCc
Confidence 5 778889999999999999999999999995 44433 579999999999999987654433
Q ss_pred --------CcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeee---EECCCCccccHHH-hhh-h-cCCCCeEEEecce
Q 008331 163 --------MLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGT---IFDEDGHRHSAAD-LLE-Y-ADPEKLTVYLRAV 228 (570)
Q Consensus 163 --------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~---~~~~~g~r~~~~~-~l~-~-~~~~g~~i~~~~~ 228 (570)
..+....+.++..++|...+ |..+..+.+.. ....+|.|+++.. |+. . ..++|+++..++.
T Consensus 202 ~~ve~~~~~~~~~~~~~~ag~e~G~~~~-----D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~ 276 (623)
T KOG1238|consen 202 LLVEAGVYPNNLFTAFHRAGTEIGGSIF-----DRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAA 276 (623)
T ss_pred ceeccccccCchhhHhHHhHHhcCCCcc-----CCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccce
Confidence 23445677788888884321 11122222211 1125788877655 665 3 3478999999999
Q ss_pred EEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccC
Q 008331 229 VQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVG 308 (570)
Q Consensus 229 V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG 308 (570)
|++|.+|..+ +++.||++....|+.++++ +.|+|||+||+|+||+|||+|||||+++|++.||+++.++|.||
T Consensus 277 vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG 349 (623)
T KOG1238|consen 277 VTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVG 349 (623)
T ss_pred EEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccc
Confidence 9999999654 4999999985337888888 89999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeeeccCCcccchhhhhhcccchhhhHhhhcCCccCcCccccccccccccccc--cCCCCCC---------
Q 008331 309 QGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNK--TDIPSLV--------- 377 (570)
Q Consensus 309 ~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------- 377 (570)
+|||||+...++...+.+......+...+.....|+...+|+....+ . ...+++... ..+..++
T Consensus 350 ~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~-~----e~~~f~~t~~~~~~~~~PD~~~~~~~~ 424 (623)
T KOG1238|consen 350 QNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG-V----ETLGFINTVSSNLSLDWPDIELHFVAG 424 (623)
T ss_pred cccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc-c----eeeEEeccccccCcCCCCCeeEEeccc
Confidence 99999999988777766655555555555666677777666554422 0 001111110 0000000
Q ss_pred --ChH---HHHHHhH-hhhccCC--CceeeEEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHH
Q 008331 378 --TPE---TVAEAVE-TVNSYLN--GTIRAGVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTI 449 (570)
Q Consensus 378 --~~~---~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~ 449 (570)
..+ .+..... ....... .....+.++..+.+|.|+|+|.|.++||.+.|+|++||+.+|+|++.+.++++.+
T Consensus 425 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~ 504 (623)
T KOG1238|consen 425 SLSSDGLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTI 504 (623)
T ss_pred cccccchhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHH
Confidence 000 0000000 0000110 1112466778899999999999999999999999999999999999999999999
Q ss_pred HHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCC---CCCCHHHHHHHHHhcccccccccccccCC------cccCC
Q 008331 450 IDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRH---VVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDR 520 (570)
Q Consensus 450 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~i~~~~~~~~~~~~H~~GTc~MG------~VVD~ 520 (570)
.++.++.+|+++...... ...|+. ...+|+++++|+|....|.||++|||+|| +|||+
T Consensus 505 ~~l~~s~af~~~~~r~~~-------------~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~ 571 (623)
T KOG1238|consen 505 IRLSNSKAFQRFGARLWK-------------KPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDP 571 (623)
T ss_pred HHHHcCHHHHHhcchhcc-------------ccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCC
Confidence 999999999988766521 012222 26789999999999999999999999999 89999
Q ss_pred CCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhccccC
Q 008331 521 DYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQDRDR 567 (570)
Q Consensus 521 ~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~~~~ 567 (570)
++||||++||||+|||+||.+|++||++|+||||||+||.|++++..
T Consensus 572 ~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~ 618 (623)
T KOG1238|consen 572 QLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA 618 (623)
T ss_pred cceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999988887653
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=9.4e-74 Score=621.21 Aligned_cols=491 Identities=27% Similarity=0.364 Sum_probs=349.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCC-CCCCccccccccc----ccCCCCCCCCCcccccCCcccc
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPY-ENPNITDTGNFAT----TLLDPSPTSPSQQFISEDGVYN 111 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 111 (570)
.++|||||||||++|+++|.+|+| |.+|||||+|+... .......+..+.. ...+|.|.+.+++...++.+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRMEC 82 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeeec
Confidence 457999999999999999999999 89999999997532 2222223321111 1124556666666666677888
Q ss_pred cCCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccC-------------C---CCCcchHH
Q 008331 112 ARARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAH-------------E---PPMLQWQS 168 (570)
Q Consensus 112 ~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~-------------~---~~~~~~~~ 168 (570)
.+|++|||+|.+|++++.|+.+.+++. .+|+|++++|||+++|+...- . ....+..+
T Consensus 83 ~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~ 162 (560)
T PRK02106 83 PRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQ 162 (560)
T ss_pred ccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHH
Confidence 999999999999999999999965442 479999999999999986521 0 11234466
Q ss_pred HHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEE
Q 008331 169 AVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHC 246 (570)
Q Consensus 169 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~G 246 (570)
.+.++++++|++...........++......| .+|.|.++.. |++ ..++.|++|++++.|++|+++++ +++|
T Consensus 163 ~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~-~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~G 236 (560)
T PRK02106 163 AFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTV-TNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAVG 236 (560)
T ss_pred HHHHHHHHcCCCcCCCCCCCCCceeEEEeeec-CCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEEE
Confidence 78889999998654322211112222111222 4778877765 776 44578999999999999999854 9999
Q ss_pred EEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCc
Q 008331 247 VTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARP 326 (570)
Q Consensus 247 V~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~ 326 (570)
|++.+.++ ...+. ++|+||||||+|+||+|||+|||||+++|+++||+++.++|.||+||+||+...+.+..+.+
T Consensus 237 V~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~ 311 (560)
T PRK02106 237 VEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQP 311 (560)
T ss_pred EEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCC
Confidence 99986544 33443 68999999999999999999999999999999999999999999999999998887766554
Q ss_pred ccchh-hhhhc-ccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHH----HHHHhHhhhccCCCceeeE
Q 008331 327 VEVSL-VQVVG-ITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPET----VAEAVETVNSYLNGTIRAG 400 (570)
Q Consensus 327 ~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 400 (570)
..... ...+. ......|.....|...... ....++.... .....+.. ....+....... .....+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~ 382 (560)
T PRK02106 312 VSLYPALKWWNKPKIGAEWLFTGTGLGASNH-----FEAGGFIRSR---AGVDWPNIQYHFLPVAIRYDGSNA-VKGHGF 382 (560)
T ss_pred cccccccchhhhhHHHHHHHhcCCCCccccc-----cceeeEEecC---CCCCCCCeEEEEeeccccccCCCC-CCCCeE
Confidence 32100 00000 0001122221222110000 0000000000 00000000 000000000000 001122
Q ss_pred EEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCC
Q 008331 401 VIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPT 480 (570)
Q Consensus 401 ~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (570)
.+...+..|.|+|+|+|+++|+++.|.|+++|+.++.|++++.++++++++++++++++.+...+
T Consensus 383 ~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------- 447 (560)
T PRK02106 383 QAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE--------------- 447 (560)
T ss_pred EEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc---------------
Confidence 33345668999999999999999999999999999999999999999999999988777664333
Q ss_pred CCCCCCCCCCHHHHHHHHHhcccccccccccccCC----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHH
Q 008331 481 NLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRY 556 (570)
Q Consensus 481 ~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r 556 (570)
..|+...++++++++|+++...+++|++|||||| +|||++|||||++||||+|+||||+.+++||++|+||+|+|
T Consensus 448 -~~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaer 526 (560)
T PRK02106 448 -ISPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEK 526 (560)
T ss_pred -cCCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHH
Confidence 4566556788999999999988899999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHhhccc
Q 008331 557 MGLRILQDR 565 (570)
Q Consensus 557 ~a~~i~~~~ 565 (570)
+||+|+++.
T Consensus 527 aAd~I~~~~ 535 (560)
T PRK02106 527 AADLIRGRT 535 (560)
T ss_pred HHHHHhccC
Confidence 999988754
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.8e-73 Score=614.38 Aligned_cols=487 Identities=27% Similarity=0.365 Sum_probs=347.2
Q ss_pred cEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC-CCCcccccccc----cccCCCCCCCCCcccccCCcccccCCc
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE-NPNITDTGNFA----TTLLDPSPTSPSQQFISEDGVYNARAR 115 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~ 115 (570)
||||||||+||+++|.+|+| + .||||||+|+.... ......+..+. ....+|.|.+.++....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 7 79999999985321 22222332111 111246666667777777788899999
Q ss_pred eeccccccCceeeeCCChhhhh---h----CCCChhhhhhhhHHHHhhccCC---------------CCCcchHHHHHHH
Q 008331 116 VLGGGSVINAGFYTRASLRYVR---E----VGWTESLVNSSYEWVEKKVAHE---------------PPMLQWQSAVRDG 173 (570)
Q Consensus 116 ~lGG~s~~~~~~~~r~~~~~~~---~----~gw~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 173 (570)
+|||+|.+|+++|.|+.+.+++ . .+|+|+++++||+++|...... +...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999996433 2 4799999999999999865411 1123446778889
Q ss_pred HHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe
Q 008331 174 LLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD 251 (570)
Q Consensus 174 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~ 251 (570)
++++|++...........++......| .+|.|+++.. |++.+ ++.|++|+++++|++|+++++ +++||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 999998654332211111222212222 4778887765 77644 478999999999999999854 999999985
Q ss_pred cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeeccCCcccc-h
Q 008331 252 HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPSARPVEV-S 330 (570)
Q Consensus 252 ~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~~~~~~~-~ 330 (570)
.+....+. ++|+||||||+|+||+||++|||||+++|+++||+++.++|.||+|||||+...+.+.++.+... .
T Consensus 235 -~~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 235 -GGRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred -CCcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 34434444 68999999999999999999999999999999999999999999999999998888776544211 0
Q ss_pred hhhhhc-ccchhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhH---hhhccCCCceeeEEEEeec
Q 008331 331 LVQVVG-ITRFDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVE---TVNSYLNGTIRAGVIVEKI 406 (570)
Q Consensus 331 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 406 (570)
....+. ......|.....+......+. ..++.... .....++....+.. ............+.+....
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGASNHFE-----GGGFVRSN---DDVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGP 381 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccccccc-----eeEEEecC---CCCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEee
Confidence 000000 000011222112211110000 00000000 00000000000000 0000000001112333455
Q ss_pred ccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCC
Q 008331 407 MGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRH 486 (570)
Q Consensus 407 ~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 486 (570)
..|.|||+|+|+++|+.+.|.|+++|+.++.|++.++++++.++++++++.+..+...+ ..|+.
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~ 445 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----------------ISPGP 445 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc----------------cCCCC
Confidence 67999999999999999999999999999999999999999999999988777664333 45555
Q ss_pred CCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHHHHH
Q 008331 487 VVGASISLEQFCRDTVMTIWHYHGGCQVD------RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLR 560 (570)
Q Consensus 487 ~~~~~~~i~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~ 560 (570)
..++++++++|+++...+.+|++|||||| +|||+++||||++||||||+||||+.+++||++|+||+|+|+||+
T Consensus 446 ~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~ 525 (532)
T TIGR01810 446 EVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADI 525 (532)
T ss_pred CCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999 499999999999999999999999999999999999999999999
Q ss_pred hhcc
Q 008331 561 ILQD 564 (570)
Q Consensus 561 i~~~ 564 (570)
|+++
T Consensus 526 I~~~ 529 (532)
T TIGR01810 526 IRGK 529 (532)
T ss_pred Hhcc
Confidence 9875
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-66 Score=553.85 Aligned_cols=490 Identities=27% Similarity=0.334 Sum_probs=360.8
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCccccccccccc----CCCCCCCCCcccccCCccccc
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTL----LDPSPTSPSQQFISEDGVYNA 112 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 112 (570)
...+||+||||||.+|+++|.+|++ |.+|||||+|+..... ....+..+.... .+|.|.+.++++...+.+.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4678999999999999999999999 9999999999743211 223333333322 247777878888888899999
Q ss_pred CCceeccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhccCC--------C-----------CCcch
Q 008331 113 RARVLGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKVAHE--------P-----------PMLQW 166 (570)
Q Consensus 113 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~~~~--------~-----------~~~~~ 166 (570)
+|++|||+|.+|++++.|+++.+|+. .+|+|++++|||+++|+..... . ...++
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999999976532 4699999999999999855431 1 11345
Q ss_pred HHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeE
Q 008331 167 QSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTA 244 (570)
Q Consensus 167 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v 244 (570)
...+.++..++|++..+.+......++...+..+ .+|.|+++.. |++ +.+++|++|++++.|++|+++++ |+
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~ 236 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA 236 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence 6777888888898755433222222222222222 3788887765 665 57889999999999999999988 99
Q ss_pred EEEEEEecCCc-eEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCCCceeeecc
Q 008331 245 HCVTFYDHVGA-RHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNPMNALFVPS 323 (570)
Q Consensus 245 ~GV~~~~~~G~-~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~~~~~~~~~ 323 (570)
+||++...++. ..... ++++||||||+|+||+|||+||||+.+.+...|+.++.++|.||+|||||....+.+..
T Consensus 237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~ 312 (542)
T COG2303 237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA 312 (542)
T ss_pred EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence 99999854442 23333 78999999999999999999999999999999999999999999999999988877765
Q ss_pred CCcccchhhhhhcccc--hhhhHhhhcCCccCcCccccccccccccccccCCCCCCChHHHHHHhHhhh--ccCCCceee
Q 008331 324 ARPVEVSLVQVVGITR--FDSYIETASGLSLAPSWAQGLTRDYSSFLNKTDIPSLVTPETVAEAVETVN--SYLNGTIRA 399 (570)
Q Consensus 324 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 399 (570)
+.+............. ...|.....|..... ....++... .+....++... ++.... .........
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~------~~~~gf~~~---~~~~~~p~~~~-~~~~~~~~~~~~~~~~~ 382 (542)
T COG2303 313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGATN------HFEGGFVRS---GPAGEYPDGQY-HFAPLPLAIRAAGAEHG 382 (542)
T ss_pred cCccccccccccccccccceeEEeecCCCcccc------ccccccccc---CccccCCCccc-ccccccccccccccCCc
Confidence 5443111110000000 011222122211100 001111100 01111111111 110000 001112234
Q ss_pred EEEEeecccccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCC
Q 008331 400 GVIVEKIMGPRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIP 479 (570)
Q Consensus 400 ~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (570)
.++.....+|.|+|.|++++.|+...|.|+.+|..++.|++.+..+++..++++.+..+..+...+
T Consensus 383 ~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e-------------- 448 (542)
T COG2303 383 FTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE-------------- 448 (542)
T ss_pred cEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh--------------
Confidence 455666789999999999999999999999999999999999999999999999876666655444
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHH
Q 008331 480 TNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLG 554 (570)
Q Consensus 480 ~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala 554 (570)
..|+...+++++|.+|++....+.+|++|||||| +|+|++|||||++||||+|+|+||+++++||++||+|||
T Consensus 449 --~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala 526 (542)
T COG2303 449 --LAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALA 526 (542)
T ss_pred --hcCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHH
Confidence 5777778899999999999999999999999999 355599999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 008331 555 RYMGLRILQD 564 (570)
Q Consensus 555 ~r~a~~i~~~ 564 (570)
+|+||+|+++
T Consensus 527 ~raA~~I~~~ 536 (542)
T COG2303 527 ERAADHILGD 536 (542)
T ss_pred HHHHHHHhhc
Confidence 9999999874
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=6.5e-50 Score=421.57 Aligned_cols=467 Identities=19% Similarity=0.172 Sum_probs=280.5
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcc----------cccccc----cccCCCC-C-------CC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNIT----------DTGNFA----TTLLDPS-P-------TS 98 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~----------~~~~~~----~~~~~~~-~-------~~ 98 (570)
|||||||+|++|+++|+.|++ |+||+|||+|.......... ....+. ..+...+ + +.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 99999999998764311000 000110 0111000 0 00
Q ss_pred CC--------cccccC------C---ccc-ccCCceeccccccCceeeeCCChhhhh--hCCCC--hhhhhhhhHHHHhh
Q 008331 99 PS--------QQFISE------D---GVY-NARARVLGGGSVINAGFYTRASLRYVR--EVGWT--ESLVNSSYEWVEKK 156 (570)
Q Consensus 99 ~~--------~~~~~~------~---~~~-~~~g~~lGG~s~~~~~~~~r~~~~~~~--~~gw~--~~~l~~~~~~~~~~ 156 (570)
.+ ..++.+ + .+. ..+-+.|||+|.+|++.+.|.+++... ..+|| +++|+|||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 00 001100 0 111 345678999999999999999985322 14687 59999999999999
Q ss_pred ccCCCCCc--ch--HHHHHHHHHHc-CC-CCCCCCCcCCCCcceeeeeEECCCCccccHH-Hhhh-----hcCCCCeEEE
Q 008331 157 VAHEPPML--QW--QSAVRDGLLEA-GV-LPYNGFTFDHIYGTKVSGTIFDEDGHRHSAA-DLLE-----YADPEKLTVY 224 (570)
Q Consensus 157 ~~~~~~~~--~~--~~~~~~~~~~~-G~-~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-----~~~~~g~~i~ 224 (570)
+++.+... +. ...+....++. |. +..+. .. .|... .| ..+.+++.. ..++ .+...|++|+
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----Pl-A~~~~--~c-~~~ak~s~~~t~~~~~~~~~~~~~n~~l~ 232 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPL----PL-ACHRR--TD-PTYVEWHSADTVFDLQPNDDAPSERFTLL 232 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccC----ch-hhhcc--CC-CccceecCCccchhhhhhhhccCCCEEEE
Confidence 98776421 11 11111112222 22 11110 00 01110 01 123333321 2222 2246789999
Q ss_pred ecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCccccc
Q 008331 225 LRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVD 303 (570)
Q Consensus 225 ~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~ 303 (570)
+++.|++|++|+++ +.+|++|++.|. +|+.++++ ||.||||||+|+||+|||+|+++... .+.|+. ++
T Consensus 233 ~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~--~p~gl~--Ns 301 (544)
T TIGR02462 233 TNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLG--RPDPTN--PP 301 (544)
T ss_pred cCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCc--CCCCcC--CC
Confidence 99999999998642 128999999986 57777775 78999999999999999999987422 233443 32
Q ss_pred --CCccCcccccCCCceeeeccCCcccchhhhhhcccchhhhHhhhcCCccCcCcccccccccc-ccccccCCCCCC--C
Q 008331 304 --QPNVGQGMSDNPMNALFVPSARPVEVSLVQVVGITRFDSYIETASGLSLAPSWAQGLTRDYS-SFLNKTDIPSLV--T 378 (570)
Q Consensus 304 --~p~VG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~ 378 (570)
++.|||||+||+...+.+.++++....+...... .+.|............ .......+. .....+.+.... +
T Consensus 302 s~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~w 378 (544)
T TIGR02462 302 PLLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRG--LDWWKEKVANHMMKHP-EDPLPIPFRDPEPQVTTPFTEEHPW 378 (544)
T ss_pred CCCCCCCcchhcCCCccEEEEecchhhhhccCCccc--cccccccchhhhcccc-CCcccccccccCccccccccccccc
Confidence 4899999999999877776665431111000000 0000000000000000 000000000 000000000000 0
Q ss_pred hHHH-HHHhH--hh-hccC-CCceeeEEEEeecccccccEEEEecC--CCCCCCCeeecCCCCCHhHHHHHHHHHHHHHH
Q 008331 379 PETV-AEAVE--TV-NSYL-NGTIRAGVIVEKIMGPRSTGHLRLRT--LDADDNPSVTFNYFQEPEDLVRCVQGMRTIID 451 (570)
Q Consensus 379 ~~~~-~~~~~--~~-~~~~-~~~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~ 451 (570)
.... ...+. .. .... .....+..+.+.+ |..+++|+|++ +|.++.|.++++|..+++|.+.+..+++.+.+
T Consensus 379 ~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~l--P~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~ 456 (544)
T TIGR02462 379 HTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTE--PKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCN 456 (544)
T ss_pred chhhhhhhhhcccccccccccceeeEEEEeccC--CCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 0000 00000 00 0000 1112334455666 66678899975 59999999999999999999999999999999
Q ss_pred HHcCcccccccCCCcchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEec
Q 008331 452 VLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVVGASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLG 526 (570)
Q Consensus 452 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g 526 (570)
+++.++..... . .+ .+. ....+.|++|||||| +|||++|||||
T Consensus 457 i~~~~G~~~~~--~-----------------~~-----------~~~--~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g 504 (544)
T TIGR02462 457 VAAKIGGYLPG--S-----------------LP-----------QFM--EPGLALHLAGTTRIGFDEQTTVANTDSKVHN 504 (544)
T ss_pred HHHHcCCCccc--c-----------------cc-----------ccc--CCCccccCCCCeecCCCCCCceECCCCcEeC
Confidence 98876532110 0 00 000 112478999999999 79999999999
Q ss_pred cCCceEeeccCCCCCCCCchHHHHHHHHHHHHHHhhcc
Q 008331 527 VDGLRVIDGSTFYNSPGTNPQATCMMLGRYMGLRILQD 564 (570)
Q Consensus 527 ~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~a~~i~~~ 564 (570)
++||||+|+|+||+.+++||++|+||||+|+|++|+++
T Consensus 505 ~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 505 FKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred CCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999865
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=2.7e-43 Score=354.18 Aligned_cols=263 Identities=35% Similarity=0.481 Sum_probs=182.5
Q ss_pred ccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCCCCCccccccccccc---CCCCCCCCCcccccCCcccccCCce
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYENPNITDTGNFATTL---LDPSPTSPSQQFISEDGVYNARARV 116 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 116 (570)
|||||||||++|+++|.+|++ + .+|||||+|+...... ........... .++.+.+.++.....+.+.+.+|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 7999999999765433 10011111111 1233334445555666777889999
Q ss_pred eccccccCceeeeCCChhhhhh-------CCCChhhhhhhhHHHHhhc-------------cC---CCCCcchHHHHHHH
Q 008331 117 LGGGSVINAGFYTRASLRYVRE-------VGWTESLVNSSYEWVEKKV-------------AH---EPPMLQWQSAVRDG 173 (570)
Q Consensus 117 lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~l~~~~~~~~~~~-------------~~---~~~~~~~~~~~~~~ 173 (570)
|||+|.+|++++.|+.+.++++ .+|+|+++++||+++|... .+ .+...+....+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999965442 3588999999999999332 22 12234456788899
Q ss_pred HHHcCCCCCCCCCcCCCCcceeeeeE-ECCCCccccHHH-hhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEE
Q 008331 174 LLEAGVLPYNGFTFDHIYGTKVSGTI-FDEDGHRHSAAD-LLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY 250 (570)
Q Consensus 174 ~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~g~r~~~~~-~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~ 250 (570)
+.++|++.... ...+..+..+... ...+|.|+++.. ||+ +.++.|++|+++++|++|+++.++ .+++||++.
T Consensus 160 ~~~~G~~~~~~--~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~ 234 (296)
T PF00732_consen 160 AEELGIPVPQD--FNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV 234 (296)
T ss_dssp HHHTTHHBCSC--TTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred HHHcCCccccc--cccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence 99999862211 1112222222222 125788887654 776 455669999999999999996332 399999999
Q ss_pred ecCCc-eEEEEecCCCCceEEEcCCccccHHHHHHhCCCChhhhhhcCCcccccCCccCcccccCC
Q 008331 251 DHVGA-RHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPANELRKRGIRVVVDQPNVGQGMSDNP 315 (570)
Q Consensus 251 ~~~G~-~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~~~l~~~gi~~~~~~p~VG~~l~dh~ 315 (570)
+.++. ...+. ++|+||||||+|+||+|||+||||+.++|+++||++++++| ||+||||||
T Consensus 235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 87776 33333 68999999999999999999999999999999999999999 999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.98 E-value=8.2e-33 Score=247.07 Aligned_cols=139 Identities=32% Similarity=0.544 Sum_probs=110.5
Q ss_pred ccccEEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccCCCcchhHHhhhhccCCCCCCCCCCC
Q 008331 409 PRSTGHLRLRTLDADDNPSVTFNYFQEPEDLVRCVQGMRTIIDVLNSRALSKFRYPDVSVQELIDLMVNIPTNLRPRHVV 488 (570)
Q Consensus 409 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 488 (570)
|.|+|+|+|+++|+++.|.|+++|+.+++|++.+.++++.+++++++. ++++...+.. ..+....+....
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~---------~~~~~~~~~~~~ 70 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELL---------PGPSPFCPDASL 70 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEE---------SCGCSCCGCSTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccc---------cccccccccccc
Confidence 789999999999999999999999999999999999999999999988 5544321100 000001222235
Q ss_pred CCHHHHHHHHHhcccccccccccccCC-----cccCCCCeEeccCCceEeeccCCCCCCCCchHHHHHHHHHHH
Q 008331 489 GASISLEQFCRDTVMTIWHYHGGCQVD-----RVVDRDYKVLGVDGLRVIDGSTFYNSPGTNPQATCMMLGRYM 557 (570)
Q Consensus 489 ~~~~~i~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rv~g~~nL~V~DaSv~P~~~~~NP~lTi~Ala~r~ 557 (570)
.+++++++|+++...+.+|++|||||| +|||++|||||++||||+|+|+||+.+++||++|+||||+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 71 DSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp TCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred ccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 788899999999999999999999999 999999999999999999999999999999999999999996
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.63 E-value=1.4e-14 Score=155.65 Aligned_cols=190 Identities=19% Similarity=0.232 Sum_probs=107.5
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCce
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARV 116 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 116 (570)
.+.++||||||+|.+|+++|.++++ |++|+||||.+..
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~----------------------------------------- 96 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA----------------------------------------- 96 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC-----------------------------------------
Confidence 3468999999999999999999999 9999999998643
Q ss_pred eccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCcCCC
Q 008331 117 LGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTFDHI 190 (570)
Q Consensus 117 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~~~~ 190 (570)
||+|...++.+......+....+.. +..+.+|++..+......+.... .....+++.+.|++... ....
T Consensus 97 -GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~-~~~~-- 171 (506)
T PRK06481 97 -GGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDN-LTIT-- 171 (506)
T ss_pred -CCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEee-cccC--
Confidence 3433333333322222222222221 22233444433221111111000 12345677777764211 0000
Q ss_pred CcceeeeeEECCCCccc---cHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCc
Q 008331 191 YGTKVSGTIFDEDGHRH---SAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKN 267 (570)
Q Consensus 191 ~~~~~~~~~~~~~g~r~---~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~ 267 (570)
.+........+.++... ....+...+++.|++|+++++|++|+.+++ +|+||.+...+|+..++. ++
T Consensus 172 ~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i~-----a~ 241 (506)
T PRK06481 172 GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTIS-----SK 241 (506)
T ss_pred CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEEe-----cC
Confidence 11101011111122111 112244556678999999999999987654 899999876555555564 79
Q ss_pred eEEEcCCccccHHHHH
Q 008331 268 EIILSAGAIGSPQLLM 283 (570)
Q Consensus 268 ~VVLaaGa~~tp~LLl 283 (570)
.||||+|+|..+.-++
T Consensus 242 ~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 242 AVVVTTGGFGANKDMI 257 (506)
T ss_pred eEEEeCCCcccCHHHH
Confidence 9999999987654433
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.62 E-value=1.1e-14 Score=157.71 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=49.2
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
+...+++.|++|+++++|++|+.+++ +|+||.+.+ +|+.+.++ ++|.||||+|+|+...-|+.
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHH
Confidence 34456678999999999999997643 999998874 66666665 77899999999986654443
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.58 E-value=4.5e-14 Score=151.80 Aligned_cols=194 Identities=17% Similarity=0.183 Sum_probs=110.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL 117 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 117 (570)
+.++||||||+|.+|+++|.+|++ |++|+||||.+. +
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~------------------------------------------~ 55 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG------------------------------------------A 55 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC------------------------------------------C
Confidence 468999999999999999999999 999999999863 3
Q ss_pred ccccccCceeeeCC-ChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCc---
Q 008331 118 GGGSVINAGFYTRA-SLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTF--- 187 (570)
Q Consensus 118 GG~s~~~~~~~~r~-~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~--- 187 (570)
||+|.+.++.+.-+ ...++...+.. ++.+.+++++.+..+...+.... .....+++.+.|++.......
T Consensus 56 gG~s~~sgG~~~~~~g~~~q~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~ 134 (492)
T PRK07121 56 GGATALSGGVIYLGGGTAVQKAAGFE-DSPENMYAYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKT 134 (492)
T ss_pred CCcccccCeEEEeCCCcHHHHhcCCC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcc
Confidence 55555555544332 22222222322 22233333333222222111111 123445667777632110000
Q ss_pred --C------CCCc----c---------eeeeeEECCCC----ccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCC
Q 008331 188 --D------HIYG----T---------KVSGTIFDEDG----HRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKP 242 (570)
Q Consensus 188 --~------~~~~----~---------~~~~~~~~~~g----~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~ 242 (570)
+ ...+ . ...... ...+ .+.....+...+++.|++|+++++|++|+.++++
T Consensus 135 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g---- 209 (492)
T PRK07121 135 SYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRV-QGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG---- 209 (492)
T ss_pred cCCCCCcccccchhhcchhhhhccCCcccceec-CCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC----
Confidence 0 0000 0 000000 0011 1111122445677789999999999999998654
Q ss_pred eEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 243 TAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 243 ~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
+++||++.+ +++.+.++ ++|.||||+|++...+-|++.
T Consensus 210 ~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 210 RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHHH
Confidence 899999974 56666665 449999999999865555543
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.56 E-value=6.4e-14 Score=152.60 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=49.1
Q ss_pred hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
+.+++.|++|+++++|++|+.|+++ +|+||.+. .+|+.+.++ +++.||||+|+|+...-|+
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~-~~~~~~~i~----a~~aVilAtGGf~~N~em~ 281 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVE-REGRTLRIG----ARRGVILATGGFDHDMDWR 281 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEE-eCCcEEEEE----eceeEEEecCcccCCHHHH
Confidence 4567789999999999999998655 99999997 477766776 5678999999998644444
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.55 E-value=3.4e-14 Score=149.97 Aligned_cols=187 Identities=23% Similarity=0.257 Sum_probs=102.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceecccc
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGGS 121 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s 121 (570)
||||||+|.||+++|.+|++ |.+|+||||++. +||++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~------------------------------------------~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR------------------------------------------LGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG------------------------------------------GGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc------------------------------------------ccccc
Confidence 89999999999999999999 999999999963 35555
Q ss_pred ccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch-------HHHHHHHHHHcCCCCCC----CCCcCCC
Q 008331 122 VINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW-------QSAVRDGLLEAGVLPYN----GFTFDHI 190 (570)
Q Consensus 122 ~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~G~~~~~----~~~~~~~ 190 (570)
...++.+.-.........+- .+..+.++.+..+......+ .++ .....+++.+.|++... .+.....
T Consensus 39 ~~s~g~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~ 116 (417)
T PF00890_consen 39 AFSSGGFDAAGTPPQREAGI-EDSPEEFFQDIMAAGGGLND-PDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPF 116 (417)
T ss_dssp GGTCSEEEESSSHSSHHTTT-TCHHHHHHHHHHHHTTT-S--HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEE
T ss_pred ccccCceeeecccccccccc-cccccccceeeecccccccc-cchhhhhhhcccceehhhhhhccccccccccccccccc
Confidence 55555444433222111111 12233344444333322221 111 23355677777764221 0000011
Q ss_pred Ccceee-eeEE-CCCC-------ccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEE
Q 008331 191 YGTKVS-GTIF-DEDG-------HRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRAC 260 (570)
Q Consensus 191 ~~~~~~-~~~~-~~~g-------~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~ 260 (570)
...... .... ..+. .......+...+++.|++|+++++|++|+.+++ +|+||++.+ .+|+.++++
T Consensus 117 g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~ 191 (417)
T PF00890_consen 117 GGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK 191 (417)
T ss_dssp TTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE
T ss_pred CCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe
Confidence 111111 1111 1111 011111244466778899999999999999876 999999984 467777775
Q ss_pred ecCCCCceEEEcCCccccHHHHHH
Q 008331 261 LNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 261 ~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
++.||||+|+|.. .++.+
T Consensus 192 -----A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 192 -----AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp -----ESEEEE----BGG-HHHHH
T ss_pred -----eeEEEeccCcccc-ccccc
Confidence 5699999999998 44443
No 14
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.54 E-value=9.6e-14 Score=150.65 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=50.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
+.+.+++.|++|+++++|++|+.+++ +|+||++.. +|+.+.++ +++.||||+|+|....-|+.
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence 34466778999999999999998765 999999974 67666675 56799999999987555543
No 15
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.54 E-value=9.2e-14 Score=148.66 Aligned_cols=196 Identities=17% Similarity=0.146 Sum_probs=110.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL 117 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 117 (570)
..++||||||+|.+|+++|.+|++ |.+|+||||++.. ..
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~----------------------------------------~~ 41 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPRE----------------------------------------WR 41 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc----------------------------------------CC
Confidence 356899999999999999999999 9999999998631 12
Q ss_pred ccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCCCcCCCC
Q 008331 118 GGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGFTFDHIY 191 (570)
Q Consensus 118 GG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~~~~~ 191 (570)
||+|.+.+++........ +... ..+..+.++++..+..+...+.... .....+++.+.|++..... ....
T Consensus 42 GG~s~~s~G~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~--~~~~ 117 (466)
T PRK08274 42 GGNSRHTRNLRCMHDAPQ-DVLV-GAYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPL--SGAL 117 (466)
T ss_pred CcccccCCceeeeCCCch-hhcc-ccccHHHHHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecC--CCcc
Confidence 444444333211111100 0000 0011222333333322211111000 1234566777776421100 0000
Q ss_pred cceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEE
Q 008331 192 GTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIIL 271 (570)
Q Consensus 192 ~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVL 271 (570)
......... ..+.......+...+++.|++++++++|++|+.+++ +++||.+.+.+|+...++ ++.|||
T Consensus 118 ~~~~~~~~~-~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIl 186 (466)
T PRK08274 118 HVARTNAFF-WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVL 186 (466)
T ss_pred ccCCCCeee-cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEE
Confidence 000000111 111111122245566778999999999999998754 899999865566666664 689999
Q ss_pred cCCccccHHHHHHhCCCC
Q 008331 272 SAGAIGSPQLLMLSGVGP 289 (570)
Q Consensus 272 aaGa~~tp~LLl~SGiG~ 289 (570)
|+|++..++.|+..-.++
T Consensus 187 AtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 187 AAGGFESNREWLREAWGQ 204 (466)
T ss_pred CCCCCCCCHHHHHhhcCC
Confidence 999999988888765543
No 16
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.53 E-value=2.3e-13 Score=146.53 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=47.7
Q ss_pred hhhh-cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 212 LLEY-ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 212 ~l~~-~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
++.. .++.|++|+++++|++|+.+++ +|+||++.. +|+.+.++ ++|.||||||+|+..+-|+
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHH
Confidence 4443 3446999999999999998754 999999864 67766776 6679999999997544443
No 17
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.51 E-value=4e-13 Score=146.05 Aligned_cols=193 Identities=19% Similarity=0.174 Sum_probs=104.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCcee
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVL 117 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 117 (570)
..++||||||+|.+|+++|..+++ |++|+||||++.. .+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~----------------------------------------~~ 41 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEA----------------------------------------NL 41 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC----------------------------------------CC
Confidence 357999999999999999999999 9999999999721 23
Q ss_pred ccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcc----h--------HHHHHHHHHHcCCCCCCCC
Q 008331 118 GGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQ----W--------QSAVRDGLLEAGVLPYNGF 185 (570)
Q Consensus 118 GG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~----~--------~~~~~~~~~~~G~~~~~~~ 185 (570)
||+|.+.++.+.-......+..+.. ++.+.++++..+......+... + .....+++.+.|++.....
T Consensus 42 GG~s~~s~Gg~~~~~~~~q~~~gi~-ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~ 120 (549)
T PRK12834 42 GGQAFWSLGGLFLVDSPEQRRLGIK-DSLELALQDWLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVV 120 (549)
T ss_pred CCceeccCCceeccCCHHHHhcCcc-cCHHHHHHHHHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecC
Confidence 4555444443332322222222332 3344444444333222211111 0 1345567777887421110
Q ss_pred C--cCC--C-C--cceeeeeEEC-CCCccccHHHhhhhc----CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-
Q 008331 186 T--FDH--I-Y--GTKVSGTIFD-EDGHRHSAADLLEYA----DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH- 252 (570)
Q Consensus 186 ~--~~~--~-~--~~~~~~~~~~-~~g~r~~~~~~l~~~----~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~- 252 (570)
. ... . . +......... ..|. .....+...+ ++.|++|++++++++|+.+++ +|+||++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~~G~-~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g-----~V~Gv~~~~~~ 194 (549)
T PRK12834 121 GWAERGGGDAGGHGNSVPRFHITWGTGP-GVVEPFERRVREAAARGLVRFRFRHRVDELVVTDG-----AVTGVRGTVLE 194 (549)
T ss_pred CccccCCcccCCcccccCceecCCCCcH-HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCC-----EEEEEEEEecc
Confidence 0 000 0 0 0000000000 0111 1111222222 345699999999999998754 9999997421
Q ss_pred -C------------CceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 253 -V------------GARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 253 -~------------G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
+ +..+.++ +|.||||+|+|+...=|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~i~-----AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 195 PSDAERGEASSREVVGEFELR-----AQAVIVTSGGIGGNHELV 233 (549)
T ss_pred cccccccccccccccceEEEe-----cCEEEEeCCCcccCHHHH
Confidence 1 1234443 689999999998554333
No 18
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.47 E-value=3.8e-13 Score=142.79 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=49.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
+...+++.|++|+++++|++|+.++++ +++||++.+.+++.+.+ +++.||||+|++....-|+
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHH
Confidence 445667789999999999999997654 89999998655654444 5799999999987644444
No 19
>PRK12839 hypothetical protein; Provisional
Probab=99.47 E-value=1.3e-12 Score=141.90 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=49.3
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
++..+.+.|++|++++.|++|+.++++ +|+||.+.+.+|. ..+. ++|.||||+|+|....-|+
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 445667789999999999999987554 9999999866664 4444 6799999999998744443
No 20
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.45 E-value=8.7e-13 Score=138.96 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=96.3
Q ss_pred CcccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceecc
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGG 119 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG 119 (570)
.++||||||+|.||+++|.++++|++|+||||++...+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg------------------------------------------ 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC------------------------------------------ 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC------------------------------------------
Confidence 57899999999999999999855999999999975332
Q ss_pred ccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcch------HHHHHHHHHHcCCCCCCCC---CcCCC
Q 008331 120 GSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQW------QSAVRDGLLEAGVLPYNGF---TFDHI 190 (570)
Q Consensus 120 ~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~---~~~~~ 190 (570)
+|.+..+...... +.++.+.|+++..+.-....+.... .....+++.+.|++..... .+...
T Consensus 41 ~s~~a~ggi~~~~---------~~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~ 111 (433)
T PRK06175 41 NTYLAQGGISVAR---------NKDDITSFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE 111 (433)
T ss_pred chHHHhHhheeCC---------CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCceeeecc
Confidence 1111111110000 0122333444333222221111100 1234567777776421110 00000
Q ss_pred CcceeeeeEECCCCc-cccHHHhhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCce
Q 008331 191 YGTKVSGTIFDEDGH-RHSAADLLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNE 268 (570)
Q Consensus 191 ~~~~~~~~~~~~~g~-r~~~~~~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~ 268 (570)
.+..........+.. +.....++..+ ++.|++|+++++|++|+.+++ +++||.+.+ ++..+.++ +|.
T Consensus 112 g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~ 180 (433)
T PRK06175 112 GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKV 180 (433)
T ss_pred CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCe
Confidence 011111111111111 11122244444 356999999999999998765 899988764 55555554 699
Q ss_pred EEEcCCcccc
Q 008331 269 IILSAGAIGS 278 (570)
Q Consensus 269 VVLaaGa~~t 278 (570)
||||+|++..
T Consensus 181 VILAtGG~~~ 190 (433)
T PRK06175 181 TILATGGIGG 190 (433)
T ss_pred EEEccCcccc
Confidence 9999999764
No 21
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.45 E-value=2.2e-12 Score=140.25 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=50.4
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
.+.+++.|++|+++++|++|+.+++ +|+||++.. +|+.+.++ +++.||||+|+|...+-|+..
T Consensus 215 ~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 215 RIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence 3456678999999999999998754 999999874 67666665 556899999999987666554
No 22
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=1e-12 Score=144.52 Aligned_cols=196 Identities=18% Similarity=0.203 Sum_probs=107.2
Q ss_pred cceeeecccCCC-----CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC-CCCcccccccccccCCCCCCC
Q 008331 26 YYTFVKDATSAP-----LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE-NPNITDTGNFATTLLDPSPTS 98 (570)
Q Consensus 26 ~~~~~~~~~~~~-----~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~-~~~~~~~~~~~~~~~~~~~~~ 98 (570)
++.|++.+.++. ...++||||||||.||+++|.+|++ |++|+||||...... +...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~----------------- 77 (640)
T PRK07573 15 EEKWDRYKFHLKLVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIA----------------- 77 (640)
T ss_pred hhhhhhccccccccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH-----------------
Confidence 467877776653 2357999999999999999999999 999999998753321 0000
Q ss_pred CCcccccCCcccccCCceeccccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCc------chHHHHHH
Q 008331 99 PSQQFISEDGVYNARARVLGGGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPML------QWQSAVRD 172 (570)
Q Consensus 99 ~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~ 172 (570)
.-||-..... .... .++.+.++++..+.-....+.. .......+
T Consensus 78 -----------------a~GGi~a~~~--~~~~-----------~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~ 127 (640)
T PRK07573 78 -----------------AQGGINAAKN--YQND-----------GDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIID 127 (640)
T ss_pred -----------------hhhchHhHhh--cccc-----------CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 0111111110 0000 0122223333222211111110 01234567
Q ss_pred HHHHcCCCCCCCCC----cCCCCcceeeeeEECC--CCccccH---HHhhhhcCCCCeEEEecceEEEEEecCCCCCCCe
Q 008331 173 GLLEAGVLPYNGFT----FDHIYGTKVSGTIFDE--DGHRHSA---ADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPT 243 (570)
Q Consensus 173 ~~~~~G~~~~~~~~----~~~~~~~~~~~~~~~~--~g~r~~~---~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~ 243 (570)
++.+.|++...... .....+.......... .|..... ..+...+++.|++|++++.|++|+.+++ +
T Consensus 128 wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~g-----~ 202 (640)
T PRK07573 128 QCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVDG-----R 202 (640)
T ss_pred HHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeCC-----E
Confidence 77788875321100 0000111111111111 1211110 1123355678999999999999998765 9
Q ss_pred EEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 244 AHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 244 v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
|+||.+.+. +|..+.+ .+|.||||+|+++.
T Consensus 203 V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 233 (640)
T PRK07573 203 ARGIVARNLVTGEIERH-----TADAVVLATGGYGN 233 (640)
T ss_pred EEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence 999999864 5665555 47999999999875
No 23
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.44 E-value=1.7e-12 Score=151.72 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=45.7
Q ss_pred CCCeEEEecceEEEEEecCCC----CCCCeEEEEEEEec---CCceEEEEecCCCCceEEEcCCccccHH
Q 008331 218 PEKLTVYLRAVVQRIKFTETG----RAKPTAHCVTFYDH---VGARHRACLNNGGKNEIILSAGAIGSPQ 280 (570)
Q Consensus 218 ~~g~~i~~~~~V~~i~~~~~~----~~~~~v~GV~~~~~---~G~~~~v~~~~~aa~~VVLaaGa~~tp~ 280 (570)
+.|++|+++++|++|+.++++ ....+|+||++.+. +|+.+.++ +|.||||+|+|+...
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~-----AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLL-----ADAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEE-----eceEEEecCCcccCc
Confidence 469999999999999997521 11238999999875 67766664 699999999998754
No 24
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.43 E-value=3.5e-12 Score=139.39 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=48.3
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
+...+++.|++|++++.|++|+.+++ +|+||.+.+.++ ...+. +++.||||+|++....-++.
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence 33456778999999999999998765 999999985444 34454 56799999999976555544
No 25
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.42 E-value=1.5e-12 Score=141.45 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=46.9
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+.+.++ +|.||||+|++..
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 444566689999999999999988763 699999876 567666664 6999999999864
No 26
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.42 E-value=4.2e-12 Score=138.63 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=50.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
++..+++.|++|++++.|++|+.+++ +|+||.+.+ +|+.+.+. +++.||||+|++....=|++
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence 45566778999999999999998754 999999874 66666665 56899999999987555544
No 27
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.42 E-value=2.6e-12 Score=140.18 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=46.6
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.++ +|.||||+|++..
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 445566789999999999999997544 999999864 367666664 6999999999875
No 28
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.42 E-value=1.8e-12 Score=140.25 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=43.7
Q ss_pred hhhhcC-CCCeEEEecceEEEEEecC-CCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYAD-PEKLTVYLRAVVQRIKFTE-TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~-~~g~~i~~~~~V~~i~~~~-~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+. +.|++|++++.|++|+.++ ++ +|+||.+.+ +|..+.+ .+|.||||+|+++.
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~ 198 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence 344443 4699999999999999874 23 899998874 6665555 37999999999753
No 29
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.41 E-value=5.5e-12 Score=137.81 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=48.3
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
+.+.+++.|++|+++++|++|+.+++ +++||.+.+ ++..+.++ +++.||||+|++....-++
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHHH
Confidence 44567778999999999999998754 999999875 44445565 4599999999987655554
No 30
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.41 E-value=2.4e-12 Score=141.03 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=46.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|+.++.+++|+.++++ +|.||.+.+. +|+.+.+. +|.||||+|+++.
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 251 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRFR-----AHSTILATGGYGR 251 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEEE-----cCeEEECCCCCcc
Confidence 444556679999999999999987544 9999998763 57666664 7999999999875
No 31
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=3e-12 Score=139.34 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=45.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
+...+.+.|+++++++.|++|+.+++ +|+||.+.+. +|+.+.+ .+|.||||+|+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 44455567999999999999999765 9999999865 4554555 4799999999987
No 32
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.41 E-value=3.1e-12 Score=140.24 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=46.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|++++.|++|+.++++ +|+||.+.+ .+|+.+.+ .+|.||||+|++..
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 445566789999999999999985443 999999865 35766666 47999999999864
No 33
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=2.9e-12 Score=140.16 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=46.8
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+. +|.||||+|+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 445566789999999999999997644 999999864 467666664 6899999999875
No 34
>PLN02815 L-aspartate oxidase
Probab=99.39 E-value=2.9e-12 Score=139.26 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=44.2
Q ss_pred hhhhcC-CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYAD-PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~-~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+. ..|++|++++.|++|+.++++ ...+|+||.+.+. +|..+.+. +|.||||+|+++.
T Consensus 161 L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 223 (594)
T PLN02815 161 LLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI-----SKVTLLASGGAGH 223 (594)
T ss_pred HHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE-----eceEEEcCCccee
Confidence 444443 459999999999999986532 0014999998653 56655664 7999999999863
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.36 E-value=5.9e-12 Score=124.84 Aligned_cols=168 Identities=20% Similarity=0.288 Sum_probs=102.9
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceec
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLG 118 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 118 (570)
+.+||||||+|+||+++|..+++ |.+|+|+|+++.... .. .+-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~Gr--Ki----------------------------------l~s 45 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGR--KI----------------------------------LMS 45 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccc--ee----------------------------------Eec
Confidence 46899999999999999999999 999999999975431 00 122
Q ss_pred cccccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeee
Q 008331 119 GGSVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGT 198 (570)
Q Consensus 119 G~s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 198 (570)
|++-.|...... ..++..+..=+...+.+.+.+. . .+.+++++..+|+.... ...| .
T Consensus 46 GgGrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~f------t------~~d~i~~~e~~Gi~~~e-----~~~G-----r 102 (408)
T COG2081 46 GGGRCNFTNSEA-PDEFLSRNPGNGHFLKSALARF------T------PEDFIDWVEGLGIALKE-----EDLG-----R 102 (408)
T ss_pred CCCCcccccccc-HHHHHHhCCCcchHHHHHHHhC------C------HHHHHHHHHhcCCeeEE-----ccCc-----e
Confidence 333444433222 2222221110112222222221 1 25688889999985321 1111 1
Q ss_pred EECC-CCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331 199 IFDE-DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 199 ~~~~-~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
.++. +....-...++..+++.|++|+++++|..|..++. +..+..++|+ ++ .++.+|||+|+..
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i-----~~d~lilAtGG~S 167 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TV-----KCDSLILATGGKS 167 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EE-----EccEEEEecCCcC
Confidence 2222 33333333466778899999999999999998874 3444445776 34 3799999999977
Q ss_pred cHHH
Q 008331 278 SPQL 281 (570)
Q Consensus 278 tp~L 281 (570)
-|++
T Consensus 168 ~P~l 171 (408)
T COG2081 168 WPKL 171 (408)
T ss_pred CCCC
Confidence 7754
No 36
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.36 E-value=1.1e-11 Score=134.37 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=34.7
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.+.++||||||+|.||+.+|.++++ |.+|+||||+...
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 4568999999999999999999999 9999999999753
No 37
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.35 E-value=1.4e-11 Score=133.43 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=44.3
Q ss_pred hhhhc-CCCCeEEEecceEEEEEecCCC-CCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYA-DPEKLTVYLRAVVQRIKFTETG-RAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~-~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+ +++|++|++++.|++|+.++.. .++.+|+||.+.+. +|+...+ .++.||||+|++..
T Consensus 144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK 208 (536)
T ss_pred HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence 34433 4469999999999999986410 00128999998764 4665556 47999999999864
No 38
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.34 E-value=1.1e-11 Score=133.18 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=44.5
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+. .|++|++++.|++|+.+++ ++.||.+.+.+|+.+.+. ++.||||+|++..
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 334444 6999999999999998765 999999887667655554 7999999999864
No 39
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.33 E-value=1.6e-11 Score=134.11 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=45.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|++++.|++|+.+++ +|.||...+ .+|+...+. +|.||||+|++..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVVR-----AKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEEE-----CCEEEECCCCCcC
Confidence 45556778999999999999998765 899998654 356555553 7999999999864
No 40
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.32 E-value=2.1e-11 Score=133.00 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=41.5
Q ss_pred CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
..|+++++++.|++|+.+++ +|+||.+.+ .+|+.+.+. +|.||||+|++..
T Consensus 146 ~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 197 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGR 197 (582)
T ss_pred CCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----CCEEEECCCCCcC
Confidence 35899999999999998765 999998864 356655564 7999999999764
No 41
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.6e-11 Score=134.13 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=40.5
Q ss_pred CeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCcccc
Q 008331 220 KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 220 g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+++++.++.+++|+.++++ +|+||.+.+.+ |+.+.+ .+|.||||+|++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 4899999999999987544 99999998754 444445 47999999999875
No 42
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.32 E-value=1.3e-11 Score=136.10 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=46.6
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|+.++.|++|+.+++ +|.||.+.+ .+|+.+.+. +|.||||+|+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 33456678999999999999998765 999999986 467766664 7999999999864
No 43
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.2e-11 Score=135.16 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=45.6
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
++..+.+.|++++.++.|++|+.++++ +|+||.+.+. +|+...+ .+|.||||+|++..
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 445556789999999999999987544 8999998653 4554555 47999999999864
No 44
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.30 E-value=3.8e-11 Score=128.80 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=43.5
Q ss_pred hhhhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+ .|++|++++.|++|+.+++ +++||.+.+. +....+ .++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 4444554 7999999999999998765 8999998854 444445 47999999999864
No 45
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.29 E-value=3.6e-11 Score=130.92 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=42.3
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+..|++++.++.|++|+.+++ +|+||.+.+ .+|+.+.+. +|.||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 346899999999999999765 999999865 367656664 7999999999864
No 46
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=2.1e-11 Score=134.03 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.3
Q ss_pred eEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 221 LTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 221 ~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
++|+.++.|++|+.+++ +++||...+ .+|+.+.+. ++.||||+|+++.
T Consensus 166 v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLFE-----APAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEEE-----cCeEEECCCcccC
Confidence 99999999999998754 899998765 356555554 7999999999764
No 47
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.29 E-value=4.3e-11 Score=129.85 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=51.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
+...+.+.|++++++++|+.|..+++ +++||++.+. +|+...++ ++.||+|||+ ++.+|+...|+
T Consensus 155 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i~-----A~~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 155 NMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEIH-----APVVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred HHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEEE-----CCEEEECCCh-hHHHHHHhcCC
Confidence 34456778999999999999998765 8999998753 35445664 7999999998 78888876654
No 48
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.28 E-value=5.3e-11 Score=130.30 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=45.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|+++++++.|++|+.+++ +|+||.+.+ .+|+...+. +|.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 44455566999999999999998764 999999875 356555564 7999999999863
No 49
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=4.3e-11 Score=130.90 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=43.7
Q ss_pred hhhhcC-CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYAD-PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~-~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
++..+. ..|++++.++.|++|+.+++ +++||.+.+. +|+...+ .+|.||||+|++..
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhcc
Confidence 444443 36999999999999998765 9999988653 5654455 37999999999853
No 50
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.27 E-value=9.7e-12 Score=128.71 Aligned_cols=167 Identities=23% Similarity=0.306 Sum_probs=81.1
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcccccCCceeccc
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNARARVLGGG 120 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 120 (570)
|||||||+|+||+++|..|++ |++|+||||+..... .. .+-|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk--Ki----------------------------------l~tG~ 44 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK--KI----------------------------------LITGN 44 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H--HH----------------------------------HHCGG
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc--ce----------------------------------eecCC
Confidence 899999999999999999999 999999999975420 00 01122
Q ss_pred cccCceeeeCCChhhhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEE
Q 008331 121 SVINAGFYTRASLRYVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIF 200 (570)
Q Consensus 121 s~~~~~~~~r~~~~~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 200 (570)
+..|.........++....+-+.+.+.+.+.+.. ...+.+.+.+.|++.. ....+ .++
T Consensus 45 GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~------------~~d~~~ff~~~Gv~~~-----~~~~g-----r~f 102 (409)
T PF03486_consen 45 GRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS------------PEDLIAFFEELGVPTK-----IEEDG-----RVF 102 (409)
T ss_dssp GT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EE-----E-STT-----EEE
T ss_pred CCccccccccchhhHhhhcccchHHHHHHHhcCC------------HHHHHHHHHhcCCeEE-----EcCCC-----EEC
Confidence 2333222111111121110001122222222211 1456777888888421 00111 222
Q ss_pred CCCCccccHHH-hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccH
Q 008331 201 DEDGHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP 279 (570)
Q Consensus 201 ~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp 279 (570)
+......+... ++..+++.|++|+++++|++|..+++ .+..|++. ++.. + .++.||||+|+...|
T Consensus 103 P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~~--~-----~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 103 PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGGE--Y-----EADAVILATGGKSYP 168 (409)
T ss_dssp ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTEE--E-----EESEEEE----SSSG
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Cccc--c-----cCCEEEEecCCCCcc
Confidence 22222222222 55567788999999999999999887 66777772 3432 3 379999999997766
Q ss_pred H
Q 008331 280 Q 280 (570)
Q Consensus 280 ~ 280 (570)
+
T Consensus 169 ~ 169 (409)
T PF03486_consen 169 K 169 (409)
T ss_dssp G
T ss_pred c
Confidence 5
No 51
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=4.2e-11 Score=130.93 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=45.2
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCC---CCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTET---GRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~---~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|+++++++.|++|+.+++ + +|+||.+.+ .+|+.+.+. +|.||||+|++..
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 44556678999999999999998752 3 899998864 356555554 7999999999863
No 52
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.24 E-value=7.5e-11 Score=129.01 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcccc
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
++.|++|++++.|++|+.++++ +|+||.+.+. +|+...+. +|.||||+|+++.
T Consensus 144 ~~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i~-----AkaVVLATGG~g~ 197 (603)
T TIGR01811 144 AAGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETHS-----ADAVILATGGYGN 197 (603)
T ss_pred ccCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcC
Confidence 3458999999999999987654 9999999864 56655554 7899999999864
No 53
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.23 E-value=7.9e-11 Score=126.79 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=42.6
Q ss_pred hhhhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+ .|++++.++.|++|+.+++ +|+||.+.+ ++..+.+ .++.||||+|++..
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence 4444443 5899999999999988754 999999875 3444445 37999999999863
No 54
>PRK08275 putative oxidoreductase; Provisional
Probab=99.19 E-value=1.7e-10 Score=125.73 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=44.6
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
+...+++.|++|++++.|++|+.++++ ++.||.+.+ .+|+...+ .+|.||||+|++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~ 200 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCcc
Confidence 445566789999999999999997443 899998764 35655555 3799999999975
No 55
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.18 E-value=1.8e-10 Score=125.30 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=41.6
Q ss_pred cCCCCeEEEecceEEEEEecCC--CCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331 216 ADPEKLTVYLRAVVQRIKFTET--GRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 216 ~~~~g~~i~~~~~V~~i~~~~~--~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
+.+.+++|+.++.|++|+.+++ + +|+||.+.+ .+|+.+.+. +|.||||+|++.
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 191 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV 191 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence 3445679999999999998752 3 899999865 356656664 799999999985
No 56
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.16 E-value=5.3e-11 Score=122.63 Aligned_cols=60 Identities=28% Similarity=0.305 Sum_probs=45.2
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
+...+.+.|++|+++++|++|..+++ +++||.+. +|+ + .++.||+|+|+ +++.|+..+|+
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i-----~ad~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---I-----RADRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---E-----EECEEEE--GG-GHHHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---c-----ccceeEecccc-cceeeeecccc
Confidence 44456677999999999999999987 88888875 563 4 36999999997 78888877653
No 57
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.15 E-value=1.6e-10 Score=127.00 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=51.8
Q ss_pred hhhhcCCCCeEEEecceEEEEEecC-CCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTE-TGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG 286 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~-~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG 286 (570)
++..+.+.|++++.+++|++|..++ ++ ++++|.+.|. +|+.+.+. ++.||+|||+ ++.+|+...|
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCH-hHHHHHHhcc
Confidence 4556778899999999999999874 33 8999998764 45555564 7999999998 7888888765
No 58
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.15 E-value=6.6e-10 Score=121.91 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=42.3
Q ss_pred hhhhcCCC-CeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccc
Q 008331 212 LLEYADPE-KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 212 ~l~~~~~~-g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
+...+.+. |++++.++.|++|+.+++ +|+||.+.+ .+|+.+.+. ++.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVFK-----AKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEEE-----CCEEEECCCchh
Confidence 33445444 599999999999998765 899998653 356555553 799999999975
No 59
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.14 E-value=5.1e-10 Score=114.85 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=51.0
Q ss_pred HhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCCCh
Q 008331 211 DLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGPA 290 (570)
Q Consensus 211 ~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~~ 290 (570)
.|+..+.+.|++|.+|++|++|...++ .++-+.. .+|+.. + .+|.||.|||. .+-+|++++|+.+.
T Consensus 158 ~l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~~~--~~g~~~-~-----~ak~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 158 ALAEEAQANGVELRLNTEVTGIEKQSD-----GVFVLNT--SNGEET-L-----EAKFVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEEEe--cCCcEE-E-----EeeEEEECCch-hHHHHHHHhCCCcc
Confidence 366667777999999999999999877 2232333 467654 5 48999999998 78999999998763
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.09 E-value=1.3e-09 Score=115.77 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=46.4
Q ss_pred hhhhcCC----CC--eEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 212 LLEYADP----EK--LTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 212 ~l~~~~~----~g--~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
|...+.+ .| ++|+++++|++|..+++ ....|.+ .+|. + .++.||+|||+ +|.+|+.++
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~-----~~~~V~T--~~G~---i-----~A~~VVvaAG~-~S~~La~~~ 280 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERSND-----SLYKIHT--NRGE---I-----RARFVVVSACG-YSLLFAQKM 280 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC-----CeEEEEE--CCCE---E-----EeCEEEECcCh-hHHHHHHHh
Confidence 5556666 56 89999999999988755 4445544 3552 4 37999999999 799999999
Q ss_pred CCC
Q 008331 286 GVG 288 (570)
Q Consensus 286 GiG 288 (570)
|++
T Consensus 281 Gi~ 283 (497)
T PTZ00383 281 GYG 283 (497)
T ss_pred CCC
Confidence 885
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.07 E-value=1.3e-09 Score=125.03 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=41.4
Q ss_pred CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+.++++.+++.+.+|+.+++ +|+||.+.+ .+|+.+.+. +|.||||+|+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence 45899999999999998754 999999865 457766664 7999999999863
No 62
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.07 E-value=2.2e-09 Score=115.60 Aligned_cols=60 Identities=20% Similarity=0.128 Sum_probs=44.9
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
...+.+.|++++.+++|++|..+++ . .+|.+.+ .+|+..++. ++.||+|||+ ++..++..
T Consensus 162 ~~~A~~~Ga~i~~~~~V~~i~~~~~-----~-~~v~~~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~ 222 (508)
T PRK12266 162 ARDAAERGAEILTRTRVVSARRENG-----L-WHVTLEDTATGKRYTVR-----ARALVNAAGP-WVKQFLDD 222 (508)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEeCC-----E-EEEEEEEcCCCCEEEEE-----cCEEEECCCc-cHHHHHhh
Confidence 3456778999999999999987643 3 4677765 246555664 8999999998 67787654
No 63
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.07 E-value=2.9e-09 Score=111.55 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccccHHHHHHhCCCC
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVGP 289 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG~ 289 (570)
.|...|.++++.++|++++.+++ +.||++.|.. |+.+.++ ++.||.|||. |+-+++...+..+
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~~~~ 236 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAGLEQ 236 (532)
T ss_pred HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhcccC
Confidence 46678999999999999999763 8899999865 7777875 8999999998 8999999887654
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.07 E-value=5e-10 Score=109.22 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
..+|||+|||+|++|+++|++|++ |++|+||||...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 457999999999999999999999 999999998753
No 65
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.06 E-value=1.8e-10 Score=105.39 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=30.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
..++||+|||+|++|+++|+.|++ |+||+|+|+...
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 457999999999999999999999 999999999853
No 66
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.06 E-value=1.2e-09 Score=115.80 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=46.0
Q ss_pred hhhhcCCCCeEEEecceEEEEEecC-CCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTE-TGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~-~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
+...+++.|++|+++++|++|+.++ ++ +++||...+ ++ ..+ .+|.||||+|+++..+-++.
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHHH
Confidence 5556778899999999999999873 33 899988742 22 344 36999999999987665544
No 67
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.05 E-value=6.3e-09 Score=110.95 Aligned_cols=66 Identities=26% Similarity=0.355 Sum_probs=47.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG 288 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG 288 (570)
++..+.+.|++|+++++|++|..++++ .+ .|.+.+ ..|+..++. ++.||+|||+ ++.+|+...|+.
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v-~v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDG----SW-TVTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC----eE-EEEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcCCC
Confidence 555666789999999999999886542 22 233332 234434453 7999999999 788999888874
No 68
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.02 E-value=3.3e-09 Score=113.21 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=30.6
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+||||||+|.||+++|.+|++ |.+|+||||+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 99999999984
No 69
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.01 E-value=4.4e-09 Score=113.39 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=46.3
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
+..+.+.|++++.+++|++|..+++ ..+|.+.+..|+..++. ++.||.|+|+ ++.+|+.+
T Consensus 162 ~~~a~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~ 221 (502)
T PRK13369 162 ALDAAERGATILTRTRCVSARREGG------LWRVETRDADGETRTVR-----ARALVNAAGP-WVTDVIHR 221 (502)
T ss_pred HHHHHHCCCEEecCcEEEEEEEcCC------EEEEEEEeCCCCEEEEE-----ecEEEECCCc-cHHHHHhh
Confidence 3456778999999999999988643 35677776556666664 7999999998 78888763
No 70
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.00 E-value=9.3e-09 Score=109.74 Aligned_cols=66 Identities=27% Similarity=0.411 Sum_probs=46.5
Q ss_pred hhhhcCCCC-eEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331 212 LLEYADPEK-LTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG 288 (570)
Q Consensus 212 ~l~~~~~~g-~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG 288 (570)
|...+++.| ++|+++++|++|..++++ ++ .|.+.+ ..|+..++. ++.||+|||+ ++.+|+..+|+.
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg----~~-~v~~~~~~~G~~~~i~-----A~~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDDG----SW-TVTVKDLKTGEKRTVR-----AKFVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCCC----CE-EEEEEEcCCCceEEEE-----cCEEEECCCc-chHHHHHHcCCC
Confidence 445555555 899999999999886552 33 244432 245433453 7999999999 788999888874
No 71
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.99 E-value=6.5e-09 Score=109.39 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=43.5
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSG 286 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SG 286 (570)
|+..+.+.|++++.+++|++|..++++ ++.+|.+. +|. + .++.||+|||+ +++.++...|
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~----~~~~v~t~--~g~---i-----~a~~vVvaagg-~~~~l~~~~g 248 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDGG----RVIGVETT--RGF---I-----GAKKVGVAVAG-HSSVVAAMAG 248 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCC----cEEEEEeC--Cce---E-----ECCEEEECCCh-hhHHHHHHcC
Confidence 455677789999999999999865433 67777654 552 3 37889999999 5666665443
No 72
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.99 E-value=1.4e-09 Score=105.72 Aligned_cols=36 Identities=36% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
..+|||+|||+|++|+++|++|++ |++|+||||+..
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999 999999999964
No 73
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.99 E-value=1.4e-09 Score=98.75 Aligned_cols=35 Identities=37% Similarity=0.406 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+-||||||+|++|+++|++||+ |+||+|+||.-.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 45699999999999999999999 999999998743
No 74
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.99 E-value=4.7e-09 Score=110.61 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=31.4
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+||||||+|..|+++|++|++ |.+|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 599999999999999999999 999999999974
No 75
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.96 E-value=8.7e-09 Score=98.99 Aligned_cols=36 Identities=36% Similarity=0.500 Sum_probs=33.0
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
..++||||||+|.+|+++|.+||+ |.+|++||+-+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 457899999999999999999999 999999998653
No 76
>PLN02661 Putative thiazole synthesis
Probab=98.96 E-value=6.5e-09 Score=103.89 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=32.0
Q ss_pred CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~ 73 (570)
..++||+|||+|++|+++|+.|++ |++|+||||+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 457899999999999999999996 79999999875
No 77
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.95 E-value=1.1e-08 Score=106.56 Aligned_cols=33 Identities=39% Similarity=0.612 Sum_probs=31.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
|||||||+|.+|+++|+.|++ |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999764
No 78
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.95 E-value=3.3e-09 Score=113.25 Aligned_cols=38 Identities=34% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCCCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCC
Q 008331 36 APLISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGG 73 (570)
Q Consensus 36 ~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~ 73 (570)
...+.++||||||+|..|+++|++|++ |.+|+|||++.
T Consensus 19 L~~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 19 LVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CCCCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 344567999999999999999999997 68999999985
No 79
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.95 E-value=1.4e-08 Score=105.66 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=32.6
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+|||+|||+|..|+++|+.|++ |.+|+||||+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 36899999999999999999999 999999999863
No 80
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.93 E-value=1.1e-08 Score=104.07 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=44.5
Q ss_pred hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331 212 LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
++..+ +++|++|+.++.+.+|+.+++. .+.||.+.+.+++...+ .++.||||+|+++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence 44433 5599999999999999999873 55599998654545555 4899999999874
No 81
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.93 E-value=3.2e-09 Score=114.01 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=43.6
Q ss_pred hhhcCC-CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccc
Q 008331 213 LEYADP-EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 213 l~~~~~-~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
.+...+ .+++++.+..|++|+.++++ ++.||...+.+ |+.+.++ +|.||||+|+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g 202 (562)
T COG1053 145 YEQLLKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAG 202 (562)
T ss_pred HHHHHHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCce
Confidence 333333 67799999999999998774 59999988754 6555554 699999999987
No 82
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.92 E-value=3.4e-08 Score=104.75 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=45.7
Q ss_pred hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEE-ecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331 212 LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFY-DHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG 288 (570)
Q Consensus 212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~-~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG 288 (570)
|...+ +..|++++++++|++|..++++ ..+ |.++ ...|+..++ .++.||+|||+ ++.+|+..+|+.
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w~-v~v~~t~~g~~~~i-----~Ad~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDG----GWE-VTVKDRNTGEKREQ-----VADYVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCC----CEE-EEEEecCCCceEEE-----EcCEEEECCCc-chHHHHHHcCCC
Confidence 44545 3468999999999999887332 332 3332 123432344 37999999999 899999999874
No 83
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.92 E-value=4.1e-09 Score=100.73 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=45.5
Q ss_pred CCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccH-HHHHH
Q 008331 219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSP-QLLML 284 (570)
Q Consensus 219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp-~LLl~ 284 (570)
.-++|.++++|++|+.+++ +|.||+|.|.+|+...+. ...||||+|+|+-. .-|++
T Consensus 158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGYSDKELLK 214 (477)
T ss_pred HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCcChHHHHH
Confidence 3489999999999996665 999999999888876663 79999999999853 44443
No 84
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.90 E-value=2e-08 Score=106.07 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=42.1
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLML 284 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~ 284 (570)
++..+.+.|++|+++++|++|..+++ ++.+|+.. ++ ++ .++.||+|+|+ ++..|+..
T Consensus 207 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~v~t~--~~---~~-----~a~~VV~a~G~-~~~~l~~~ 263 (416)
T PRK00711 207 LAAMAEQLGVKFRFNTPVDGLLVEGG-----RITGVQTG--GG---VI-----TADAYVVALGS-YSTALLKP 263 (416)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEecCC-----EEEEEEeC--Cc---EE-----eCCEEEECCCc-chHHHHHH
Confidence 44566778999999999999988765 66666543 44 23 37999999998 56666543
No 85
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.89 E-value=1.1e-08 Score=107.19 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=43.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
+...+.+.|++++++++|+++..+++ .+ .|+. .+| ++ .++.||+|+|+ +++.++...|+
T Consensus 155 L~~~~~~~Gv~i~~~~~V~~i~~~~~-----~~-~V~~--~~g---~i-----~ad~vV~A~G~-~s~~l~~~~g~ 213 (393)
T PRK11728 155 MAELIQARGGEIRLGAEVTALDEHAN-----GV-VVRT--TQG---EY-----EARTLINCAGL-MSDRLAKMAGL 213 (393)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEecCC-----eE-EEEE--CCC---EE-----EeCEEEECCCc-chHHHHHHhCC
Confidence 44566778999999999999987654 33 3443 345 24 37999999998 78888877765
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.87 E-value=1.5e-09 Score=114.53 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=0.0
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
.+.+.|++|++++.|.+++.+++ ++++|.+.++.| ..++ .++.||-|+|- -.|+.++|+
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG~---g~l~~~aG~ 157 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATGD---GDLAALAGA 157 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-cccc-----ccccccccccc---ccccccccc
Confidence 44668999999999999999876 899999987666 5666 48999999993 477888875
No 87
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.80 E-value=1.2e-08 Score=107.67 Aligned_cols=36 Identities=42% Similarity=0.689 Sum_probs=33.4
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
+.|||||||+|++|+++|+.|++ |++|+||||+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 46999999999999999999999 9999999999753
No 88
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.80 E-value=7.8e-08 Score=100.89 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=38.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPN 80 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~ 80 (570)
+++|||||||+|.+|+++|..|++ |.|||+||+.+.+++...
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 568999999999999999999999 999999999998876443
No 89
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.78 E-value=2.6e-08 Score=104.19 Aligned_cols=37 Identities=43% Similarity=0.692 Sum_probs=34.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
.+|||||||+|+||+++|++|++ |++|+||||+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 57999999999999999999999 99999999997653
No 90
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.74 E-value=1.3e-07 Score=100.45 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=46.7
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
+...+++.|++++++++|++|+++.++ +..+|+||++.. +|+..++.+. +++.||+++|++.
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t 293 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCc
Confidence 445677899999999999999986221 224899999974 4444444433 8999999999974
No 91
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.73 E-value=3.2e-07 Score=93.44 Aligned_cols=66 Identities=27% Similarity=0.386 Sum_probs=50.1
Q ss_pred hhhhc-CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331 212 LLEYA-DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG 288 (570)
Q Consensus 212 ~l~~~-~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG 288 (570)
++..+ ++.|+++.++++|++|...+++ ---|.+++ ..|....++ ++.|++.||+ ++=.||++|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcCCh
Confidence 55533 4469999999999999998773 23355554 346666674 8999999999 788999999883
No 92
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.73 E-value=4.3e-08 Score=101.62 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=31.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
|||||||+|.+|+++|++|++ |.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999853
No 93
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.73 E-value=3.9e-08 Score=100.37 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCCccccHHHh--hh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccc
Q 008331 202 EDGHRHSAADL--LE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 202 ~~g~r~~~~~~--l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
.+|.-..+..- +. -|.+.|+.+.-..+|.+|+.|+++ ++.|++++|. .|+++.|+ +|.||-|+|-|
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpf- 286 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPF- 286 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCc-
Confidence 46655555431 11 355689999999999999999886 8999999985 48888886 89999999997
Q ss_pred cHHHHHH
Q 008331 278 SPQLLML 284 (570)
Q Consensus 278 tp~LLl~ 284 (570)
|-.|++.
T Consensus 287 sDsIr~M 293 (680)
T KOG0042|consen 287 SDSIRKM 293 (680)
T ss_pred cHHHHhh
Confidence 3444443
No 94
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.67 E-value=1.5e-07 Score=105.16 Aligned_cols=33 Identities=36% Similarity=0.509 Sum_probs=31.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
++||||||+|.+|+++|+.|++ |.+|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4799999999999999999999 99999999985
No 95
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.67 E-value=1.4e-07 Score=101.24 Aligned_cols=35 Identities=40% Similarity=0.652 Sum_probs=32.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..+|||||||||.||+.||..||+ |.+|+|+|+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 346999999999999999999999 99999999874
No 96
>PRK10015 oxidoreductase; Provisional
Probab=98.65 E-value=1.3e-07 Score=99.84 Aligned_cols=36 Identities=33% Similarity=0.633 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
++|||||||+|+||+++|+.||+ |++|+||||+...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 46999999999999999999999 9999999999753
No 97
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.61 E-value=2.9e-07 Score=90.49 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=45.6
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
++..+|+++..+ .|..|+.|++ .+.||.++++.|++.+.. |..-|+|-|.|.. |.+|
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSn---lRrs 213 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSN---LRRS 213 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHH---HHHH
Confidence 456789998665 7888888877 899999998888877764 7899999999844 4555
No 98
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.61 E-value=1.9e-07 Score=98.91 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
....+|+|||||++|+++|.+|.+ |.+|+|+||++..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v 45 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV 45 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 345799999999999999999999 9999999998754
No 99
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.60 E-value=2.4e-07 Score=96.96 Aligned_cols=31 Identities=45% Similarity=0.638 Sum_probs=28.8
Q ss_pred EEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 45 IIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 45 IIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
||||+|++|+++|.+|++ |.+|+||||++..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 699999999999999999 9999999998753
No 100
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.60 E-value=4.4e-07 Score=97.28 Aligned_cols=38 Identities=32% Similarity=0.494 Sum_probs=35.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
..+||||||||.+|+++|..||+ |++|+||||.....+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 36899999999999999999999 999999999887665
No 101
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.59 E-value=6.8e-07 Score=93.34 Aligned_cols=37 Identities=35% Similarity=0.497 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
..++||||||+|.+|+++|+.|++ |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 457899999999999999999999 9999999998754
No 102
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.59 E-value=4.3e-07 Score=87.94 Aligned_cols=61 Identities=25% Similarity=0.160 Sum_probs=45.3
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
+...+.+.|+.++.+..|..+.++++. ...++|.++ +|..+ -+|.+|+++|+ ++.+||-.|
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~---~~~v~V~Tt--~gs~Y-------~akkiI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVDEE---GNHVSVQTT--DGSIY-------HAKKIIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeeccCC---CceeEEEec--cCCee-------ecceEEEEecH-HHHhhcCcc
Confidence 334678899999999999999887652 134445444 77643 37999999999 888988765
No 103
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.58 E-value=4e-07 Score=98.16 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=48.1
Q ss_pred CCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331 201 DEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ 280 (570)
Q Consensus 201 ~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~ 280 (570)
+..|.......+.+.+++.|++|+++++|++|..+++ ++.+|.+. +|+. + .++.||+|+|...+-.
T Consensus 224 ~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 224 PKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDTFG 289 (493)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHHHH
Confidence 3344433333355667788999999999999998765 88899875 5653 3 3688999999865544
Q ss_pred HH
Q 008331 281 LL 282 (570)
Q Consensus 281 LL 282 (570)
.|
T Consensus 290 ~L 291 (493)
T TIGR02730 290 KL 291 (493)
T ss_pred Hh
Confidence 34
No 104
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.57 E-value=2.9e-07 Score=86.54 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=29.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+++|||+|++|+++|+.|++ |.+|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 69999999999999999999 99999999995
No 105
>PRK06185 hypothetical protein; Provisional
Probab=98.55 E-value=2.9e-07 Score=96.87 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=33.4
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
...+|||+|||+|++|+++|..|++ |.+|+|||+.+
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4567999999999999999999999 99999999985
No 106
>PLN02985 squalene monooxygenase
Probab=98.50 E-value=8.4e-07 Score=95.51 Aligned_cols=37 Identities=32% Similarity=0.404 Sum_probs=33.7
Q ss_pred CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..+..+||||||+|++|+++|..|++ |.+|+||||..
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 34568999999999999999999999 99999999974
No 107
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.50 E-value=1.4e-06 Score=95.24 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=47.1
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+ .+|+.+.++ +|.||||+|++..
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 445566789999999999999987554 999999865 467766664 7999999999874
No 108
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.50 E-value=1.5e-07 Score=93.22 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=53.1
Q ss_pred hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe----cCCce-------EEEEecCCCCceEEEcCCccc--cHH
Q 008331 214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD----HVGAR-------HRACLNNGGKNEIILSAGAIG--SPQ 280 (570)
Q Consensus 214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~----~~G~~-------~~v~~~~~aa~~VVLaaGa~~--tp~ 280 (570)
..|+..|++|+.+..+.++++++++ .|.||.+.| ++|.. ..++ ++..|+|-|.=+ |-+
T Consensus 191 ~kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~h-----ak~TifAEGc~G~Lskq 261 (621)
T KOG2415|consen 191 EKAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEFH-----AKVTIFAEGCHGSLSKQ 261 (621)
T ss_pred HHHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCccccccccceec-----ceeEEEeccccchhHHH
Confidence 4788899999999999999999987 899999876 23321 2233 688899888654 567
Q ss_pred HHHHhCCCChhhhhhcCC
Q 008331 281 LLMLSGVGPANELRKRGI 298 (570)
Q Consensus 281 LLl~SGiG~~~~l~~~gi 298 (570)
++.+=++..-.+-+..||
T Consensus 262 i~kkf~Lr~n~e~qtYgl 279 (621)
T KOG2415|consen 262 IIKKFDLRENCEPQTYGL 279 (621)
T ss_pred HHHHhCcccCCCcceecc
Confidence 776655433333343333
No 109
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.44 E-value=6.5e-07 Score=91.12 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=36.1
Q ss_pred cCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331 216 ADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 216 ~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
...+|++|+ +.+|++|+.+++ ++.||... +|.. + .++.||||+|.|.
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~-----~a~~vVlaTGtfl 152 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--I-----EADAVVLATGTFL 152 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--E-----EECEEEE-TTTGB
T ss_pred hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--E-----ecCEEEEeccccc
Confidence 356899996 679999999887 99999875 7764 3 3799999999953
No 110
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.43 E-value=1.8e-06 Score=90.43 Aligned_cols=36 Identities=36% Similarity=0.478 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 567999999999999999999999 999999999863
No 111
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.42 E-value=5.7e-07 Score=97.38 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 202 EDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 202 ~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
..|.......+...+++.|++|++++.|++|..+++ ++++|++. +|+. + .++.||+|++...+-..
T Consensus 215 ~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~~~ 280 (502)
T TIGR02734 215 RGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHTYRR 280 (502)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHHHH
Confidence 334332333355566778999999999999998765 78888765 5653 3 36889999997666655
Q ss_pred HH
Q 008331 282 LM 283 (570)
Q Consensus 282 Ll 283 (570)
|+
T Consensus 281 l~ 282 (502)
T TIGR02734 281 LL 282 (502)
T ss_pred hc
Confidence 54
No 112
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.40 E-value=1.8e-07 Score=88.34 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=33.5
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
.+++.+++++++++|+++..+++ + --|++ .++ .++. ++.||||+|.+..|+.+..-
T Consensus 91 ~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 91 YAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred HHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCccccc
Confidence 55666888999999999999876 3 22444 356 3343 69999999998888887544
No 113
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.37 E-value=2.2e-06 Score=82.99 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=47.1
Q ss_pred hcCCCCeEEEecceEEEEEecC---------CCCC---CCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331 215 YADPEKLTVYLRAVVQRIKFTE---------TGRA---KPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~---------~~~~---~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL 282 (570)
.+...|+.+. +-+|++++++. .+.. -.++.||.++-.++..++++ ...+|+|||+ +|-++.
T Consensus 252 k~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk-----~al~V~aAGa-~s~QvA 324 (509)
T KOG2853|consen 252 KAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVK-----FALCVNAAGA-WSGQVA 324 (509)
T ss_pred HhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCcee-----EEEEEeccCc-cHHHHH
Confidence 4555677664 44888887762 2101 12566777765566667775 6889999999 899999
Q ss_pred HHhCCCC
Q 008331 283 MLSGVGP 289 (570)
Q Consensus 283 l~SGiG~ 289 (570)
.+.|||.
T Consensus 325 rlAgIG~ 331 (509)
T KOG2853|consen 325 RLAGIGK 331 (509)
T ss_pred HHhccCC
Confidence 9999983
No 114
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.36 E-value=3.7e-06 Score=88.71 Aligned_cols=36 Identities=39% Similarity=0.551 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
..+|||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 457999999999999999999999 999999999874
No 115
>PRK06126 hypothetical protein; Provisional
Probab=98.34 E-value=1.1e-05 Score=88.37 Aligned_cols=35 Identities=34% Similarity=0.517 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..++||+|||+|++|+++|..|++ |.+|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 457899999999999999999999 99999999875
No 116
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.33 E-value=4.8e-06 Score=87.96 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=34.5
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCe-EEEEccCCCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGGSPY 76 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~~~~ 76 (570)
..+.+||+|||+|.+|+++|++|.+ |.. ++||||.....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~G 45 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVG 45 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcC
Confidence 4567899999999999999999999 887 99999997543
No 117
>PRK07208 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-05 Score=86.96 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=35.1
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
.+..||||||||.+|+++|++|++ |.+|+|+|+.+..++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 356799999999999999999999 999999999887655
No 118
>PLN02697 lycopene epsilon cyclase
Probab=98.31 E-value=2.1e-06 Score=91.99 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+..|||||||+|++|+++|..|++ |++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 446999999999999999999999 9999999975
No 119
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.30 E-value=5.3e-06 Score=90.68 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=46.3
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe-cCCceEEEEecCCCCceEEEcCCcccc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD-HVGARHRACLNNGGKNEIILSAGAIGS 278 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~-~~G~~~~v~~~~~aa~~VVLaaGa~~t 278 (570)
+...+.+.|++|++++.|++|+.+++ +|+||...+ .+|+...++ +|.||||+|+++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 44556678999999999999998754 999999865 357666664 7999999999865
No 120
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.26 E-value=5.2e-06 Score=88.89 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
...||+||||+|++|..+|.+|++ |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346999999999999999999999 99999999864
No 121
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=9.2e-06 Score=87.15 Aligned_cols=34 Identities=38% Similarity=0.621 Sum_probs=31.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
...||+||||||+||+.+|.+|++ |++|+|+|++
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 357999999999999999999999 9999999986
No 122
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.24 E-value=1.3e-05 Score=87.41 Aligned_cols=36 Identities=39% Similarity=0.501 Sum_probs=33.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
...+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 567999999999999999999999 999999999864
No 123
>PRK08244 hypothetical protein; Provisional
Probab=98.21 E-value=7.9e-06 Score=88.23 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=32.0
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+|||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999 999999999864
No 124
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.21 E-value=1.4e-05 Score=82.43 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=47.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
+...+++.|++++.+++|+++..+++ ++++|.+. ++....+ .++.||||+|++.|..|+...
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhhc
Confidence 34456778999999999999998876 88887764 3422344 378899999998788886654
No 125
>PRK06847 hypothetical protein; Provisional
Probab=98.17 E-value=7e-06 Score=85.38 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=32.1
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+..||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 45799999999999999999999 999999998753
No 126
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.16 E-value=1e-05 Score=84.46 Aligned_cols=33 Identities=36% Similarity=0.602 Sum_probs=31.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999753
No 127
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.14 E-value=2.7e-05 Score=83.47 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=31.2
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
++||+||||+|+||+.+|.+|++ |++|+|+|++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 36999999999999999999999 9999999986
No 128
>PRK07190 hypothetical protein; Provisional
Probab=98.12 E-value=2.3e-05 Score=84.08 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+.+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 346899999999999999999999 999999999864
No 129
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.12 E-value=2.2e-05 Score=84.38 Aligned_cols=32 Identities=38% Similarity=0.706 Sum_probs=30.5
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|||||||+|.+|+.+|..+++ |.+|+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999874
No 130
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.12 E-value=1.6e-05 Score=83.60 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=31.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~ 74 (570)
.|||+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 3899999999999999999999 7 99999999863
No 131
>PRK06834 hypothetical protein; Provisional
Probab=98.11 E-value=2.8e-05 Score=83.53 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999 999999998863
No 132
>PRK06184 hypothetical protein; Provisional
Probab=98.10 E-value=3.9e-05 Score=83.02 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=32.4
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 35899999999999999999999 999999999764
No 133
>PRK07045 putative monooxygenase; Reviewed
Probab=98.10 E-value=3.7e-05 Score=80.34 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+.++||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 356899999999999999999999 999999999874
No 134
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.10 E-value=3.3e-05 Score=80.84 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5799999999999999999999 999999999863
No 135
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.10 E-value=1.5e-05 Score=76.54 Aligned_cols=39 Identities=38% Similarity=0.492 Sum_probs=34.2
Q ss_pred CCCCCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331 36 APLISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS 74 (570)
Q Consensus 36 ~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~ 74 (570)
....+.||.||||+|..|++.|.+|.- +++|+||||-..
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 344678999999999999999999975 799999999864
No 136
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.09 E-value=1.5e-05 Score=80.21 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=46.9
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
+.+.+++.|.+|++++.|++|+.|++ +++||... +|++ ++ +|.||=.|+-+.|=.-|+
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~e--v~-----sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTE--VR-----SKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcE--EE-----eeeeecCCchHHHHHHhC
Confidence 55678889999999999999999995 99999997 7865 43 588888888777753443
No 137
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=7.5e-06 Score=84.65 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=37.5
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccc
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIG 277 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~ 277 (570)
...|++|+.+ .|++|+.+++. +|.||... +|.. + .++.|||++|+|-
T Consensus 112 ~~~NL~l~q~-~v~dli~e~~~----~v~GV~t~--~G~~--~-----~a~aVVlTTGTFL 158 (621)
T COG0445 112 NQPNLHLLQG-EVEDLIVEEGQ----RVVGVVTA--DGPE--F-----HAKAVVLTTGTFL 158 (621)
T ss_pred cCCCceehHh-hhHHHhhcCCC----eEEEEEeC--CCCe--e-----ecCEEEEeecccc
Confidence 5679999776 78888887663 79999986 7864 3 4799999999983
No 138
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.06 E-value=4.5e-05 Score=77.40 Aligned_cols=193 Identities=17% Similarity=0.190 Sum_probs=100.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc------cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCccccc
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ------NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGVYNA 112 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~------g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (570)
...||+||||+|++|+.+|++++. .++|+++|+|....... .+ .... + ......-. ...
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~---~~-~~~~---~-------~~~c~~~~-~~~ 80 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRL---CP-KDEK---K-------LEKCPKCD-PCP 80 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhh---cc-cccc---c-------hhhcCCCC-Cce
Confidence 457999999999999999999995 36899999997543100 00 0000 0 00000000 011
Q ss_pred CCceeccccccCceeee-CCCh-hhhhh--CCCChhhhhhhhHHHH----hhccCCCC----CcchHHHHH-HHHHHcCC
Q 008331 113 RARVLGGGSVINAGFYT-RASL-RYVRE--VGWTESLVNSSYEWVE----KKVAHEPP----MLQWQSAVR-DGLLEAGV 179 (570)
Q Consensus 113 ~g~~lGG~s~~~~~~~~-r~~~-~~~~~--~gw~~~~l~~~~~~~~----~~~~~~~~----~~~~~~~~~-~~~~~~G~ 179 (570)
--.++||...+..+.+. +|.. .+++. .+|. .+++... -++++... ..+....+. ..++++|.
T Consensus 81 I~~G~GgaG~fs~g~lnl~P~~Gg~~~~~~~d~~-----~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a 155 (486)
T COG2509 81 IVIGFGGAGLFSDGILNLRPIRGGDVHERTKDTD-----EFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGA 155 (486)
T ss_pred eEecccccccccccceecccccccchhhhhCChH-----HHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCC
Confidence 12367898888887765 3322 12111 1221 1111111 11122111 011122222 22333333
Q ss_pred CC-CCCCCcCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEE
Q 008331 180 LP-YNGFTFDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHR 258 (570)
Q Consensus 180 ~~-~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~ 258 (570)
.. +-. ....+.| .+..+.-..++.+..+..|++++++|+|++|++.++ .+.+|... +|..
T Consensus 156 ~~eil~-----~~~rHiG-----TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~-- 216 (486)
T COG2509 156 GEEILP-----IYQRHIG-----TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE-- 216 (486)
T ss_pred Cceeee-----ccccccC-----ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--
Confidence 11 000 0000010 122222333445566778999999999999999887 57777765 6754
Q ss_pred EEecCCCCceEEEcCCc
Q 008331 259 ACLNNGGKNEIILSAGA 275 (570)
Q Consensus 259 v~~~~~aa~~VVLaaGa 275 (570)
+ .++.||||-|-
T Consensus 217 i-----~~~~vvlA~Gr 228 (486)
T COG2509 217 I-----EADYVVLAPGR 228 (486)
T ss_pred E-----ecCEEEEccCc
Confidence 3 37999999995
No 139
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.04 E-value=4.2e-05 Score=80.58 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=53.0
Q ss_pred eEECCCCccccHHH---hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCC
Q 008331 198 TIFDEDGHRHSAAD---LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAG 274 (570)
Q Consensus 198 ~~~~~~g~r~~~~~---~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaG 274 (570)
-+.+.+|.-.++.. +...|.+.|+.|+.+|.|++|....+ +..||++. -|.. .+..||-|||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~i--------et~~~VNaaG 240 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSI--------ETECVVNAAG 240 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Ccce--------ecceEEechh
Confidence 44456776655543 44577889999999999999998877 45589876 6753 3678999999
Q ss_pred ccccHHHHHHhCC
Q 008331 275 AIGSPQLLMLSGV 287 (570)
Q Consensus 275 a~~tp~LLl~SGi 287 (570)
. |.-..-.++|+
T Consensus 241 v-WAr~Vg~m~gv 252 (856)
T KOG2844|consen 241 V-WAREVGAMAGV 252 (856)
T ss_pred H-HHHHhhhhcCC
Confidence 6 55555555553
No 140
>PRK11445 putative oxidoreductase; Provisional
Probab=98.03 E-value=6.1e-05 Score=77.56 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=30.6
Q ss_pred ccEEEECCCCchhHHHHhhhccCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~ 74 (570)
|||+|||+|+||+++|..|++..+|+||||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 899999999999999999988789999998864
No 141
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.01 E-value=2.7e-05 Score=81.37 Aligned_cols=32 Identities=41% Similarity=0.613 Sum_probs=30.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.+||+|||+|++|+++|..|++ |.+|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5799999999999999999999 9999999997
No 142
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.01 E-value=7.4e-05 Score=81.77 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=33.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
..++||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 467999999999999999999999 999999999863
No 143
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.00 E-value=3.5e-05 Score=83.59 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=30.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
.+.||++|||||++|+.+|.+|++ |++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999974
No 144
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.00 E-value=4.1e-06 Score=63.57 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=28.1
Q ss_pred EECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 46 IVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 46 IVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
|||+|++|+++|++|++ |.+|+|+||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999 99999999998654
No 145
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.98 E-value=0.0002 Score=76.47 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=32.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
+|+|||+|.+|+++|++|++ |.+|+|+|+.+...+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 48999999999999999999 999999999886554
No 146
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.94 E-value=7e-05 Score=81.28 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
+...+.+.|++|+++++|++|..+++ ++.||++.+. +|+...++ ++.||+|||+ ++..|+...|+
T Consensus 134 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 134 NVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCc-chHHHHHhcCC
Confidence 44567788999999999999998765 8999998753 45555664 7999999998 78899887765
No 147
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.92 E-value=8.7e-06 Score=73.71 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=29.9
Q ss_pred cccEEEECCCCchhHHHHhhhc---cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~ 73 (570)
+-||||||+|.+|+++|+..+. +++|.+||..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 5699999999999999999996 69999999764
No 148
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.91 E-value=7.9e-06 Score=86.59 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=33.8
Q ss_pred CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
....+|||||||+|+||+++|..|++ |++|+||||..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44668999999999999999999999 99999999874
No 149
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=1e-05 Score=78.20 Aligned_cols=39 Identities=38% Similarity=0.597 Sum_probs=35.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP 79 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~ 79 (570)
.||+||||||.+|+++|..|++ |.+|||+||-+..++|-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 3899999999999999999999 99999999998887653
No 150
>PRK07236 hypothetical protein; Provisional
Probab=97.90 E-value=0.00029 Score=73.61 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=31.8
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
...||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45799999999999999999999 99999999885
No 151
>PRK07588 hypothetical protein; Provisional
Probab=97.89 E-value=3.1e-05 Score=81.05 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=30.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 79999999999999999999 999999999853
No 152
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.88 E-value=2e-05 Score=84.87 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=28.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
-|+|||||++|+++|..|.| |++|+++||.+..+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC
Confidence 48999999999999999999 99999999997654
No 153
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=7.1e-05 Score=78.31 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.0
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.-+|+|||||+||+++|+.|.+ |..|+|+||.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 3489999999999999999999 9999999999754
No 154
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.83 E-value=0.0001 Score=79.88 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=30.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
...|||+|||+|+||+.+|.+|++ |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 457999999999999999999999 999999963
No 155
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.83 E-value=1.2e-05 Score=85.52 Aligned_cols=34 Identities=35% Similarity=0.683 Sum_probs=31.8
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
++||+||||+|++|..+|.+|++ |++|+|+||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36999999999999999999999 99999999964
No 156
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.82 E-value=1e-05 Score=84.46 Aligned_cols=31 Identities=42% Similarity=0.790 Sum_probs=30.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
|||||||+|+||+++|+.|++ |++|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 157
>PTZ00058 glutathione reductase; Provisional
Probab=97.81 E-value=2e-05 Score=85.52 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..+||+||||+|++|..+|.+|++ |++|+|+||+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 357999999999999999999999 99999999874
No 158
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.80 E-value=1.5e-05 Score=79.61 Aligned_cols=34 Identities=44% Similarity=0.721 Sum_probs=31.9
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
|||+|||+|++|+++|..|++ |.+|+|+||....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 799999999999999999999 9999999998643
No 159
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.77 E-value=1.7e-05 Score=84.42 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=30.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+||+||||+|+||..+|.+|++ |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 6999999999999999999999 9999999985
No 160
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.76 E-value=1.7e-05 Score=81.44 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=30.6
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
+|||||||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5899999999999999999999 9999999998653
No 161
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.73 E-value=0.00018 Score=76.94 Aligned_cols=31 Identities=35% Similarity=0.648 Sum_probs=29.4
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|+||||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999873
No 162
>PRK06116 glutathione reductase; Validated
Probab=97.69 E-value=2.7e-05 Score=83.02 Aligned_cols=34 Identities=35% Similarity=0.581 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+||+||||+|+||+.+|.+|++ |++|+|+|++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 46999999999999999999999 99999999973
No 163
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.68 E-value=2.9e-05 Score=81.29 Aligned_cols=35 Identities=40% Similarity=0.508 Sum_probs=32.7
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+.|||||||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 457999999999999999999999 99999999875
No 164
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.68 E-value=3e-05 Score=82.46 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.5
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
++||+||||+|++|+.+|.+|++ |++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 36999999999999999999999 999999999853
No 165
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.67 E-value=3.1e-05 Score=80.97 Aligned_cols=37 Identities=38% Similarity=0.607 Sum_probs=33.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
+.++||||||+|++|+++|..|++ |.+|+|+||++..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 346899999999999999999999 9999999998653
No 166
>PRK06370 mercuric reductase; Validated
Probab=97.66 E-value=3.8e-05 Score=82.23 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=33.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
..+||+||||+|+||..+|.+|++ |++|+|+|++...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~G 40 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLG 40 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccC
Confidence 456999999999999999999999 9999999997543
No 167
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=3.1e-05 Score=82.95 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..+||+||||+|+||+.+|.+|++ |.+|+|+|++.
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 357999999999999999999999 99999999875
No 168
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.65 E-value=4.5e-05 Score=81.01 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=35.1
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGA 275 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa 275 (570)
++..+.+.|++++.+ +|+++..++++ .+++|+.. +|+ ++. ++-||=|+|.
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~g----~i~~v~~~--~g~--~i~-----ad~~IDASG~ 209 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDEDG----RITAVRLD--DGR--TIE-----ADFFIDASGR 209 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTS----EEEEEEET--TSE--EEE-----ESEEEE-SGG
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCCC----CEEEEEEC--CCC--EEE-----EeEEEECCCc
Confidence 345677779999988 58888888765 88888876 564 343 7999999995
No 169
>PRK05868 hypothetical protein; Validated
Probab=97.65 E-value=0.00065 Score=70.52 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=30.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 89999999999999999999 999999999864
No 170
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=3.6e-05 Score=82.34 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=30.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+||+||||+|+||+.+|.+|++ |++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999999999999999 9999999974
No 171
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.64 E-value=2.9e-05 Score=81.27 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.3
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+||||||+|++|+++|..|++ |++|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999864
No 172
>PTZ00367 squalene epoxidase; Provisional
Probab=97.63 E-value=4.9e-05 Score=82.55 Aligned_cols=35 Identities=46% Similarity=0.586 Sum_probs=32.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+.+|||||||+|++|+++|..|++ |.+|+|+||..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 457999999999999999999999 99999999875
No 173
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.62 E-value=4.1e-05 Score=78.61 Aligned_cols=36 Identities=50% Similarity=0.680 Sum_probs=33.0
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
+|++|||||.+|+++|.+|++ |.+|+|||+....++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 799999999999999999999 999999999776554
No 174
>PRK09126 hypothetical protein; Provisional
Probab=97.62 E-value=3.5e-05 Score=80.65 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=32.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+|||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 5899999999999999999999 999999999975
No 175
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.62 E-value=4.5e-05 Score=81.70 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
...||+||||+|++|+.+|.+|++ |++|+|+|+++...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~G 41 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG 41 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence 346999999999999999999999 99999999975443
No 176
>PRK08013 oxidoreductase; Provisional
Probab=97.61 E-value=4e-05 Score=80.46 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=32.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+|||||||+|++|+++|..|++ |++|+||||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5899999999999999999999 999999999874
No 177
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.61 E-value=4.2e-05 Score=81.33 Aligned_cols=34 Identities=38% Similarity=0.602 Sum_probs=32.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+||+||||||+||+.+|.+|++ |.+|+|+||++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 6999999999999999999999 999999999863
No 178
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.60 E-value=4.2e-05 Score=80.42 Aligned_cols=33 Identities=42% Similarity=0.608 Sum_probs=31.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999986
No 179
>PLN02546 glutathione reductase
Probab=97.59 E-value=4.3e-05 Score=82.99 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
..+|||||||+|++|..+|.+|++ |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 346999999999999999999999 999999996
No 180
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=5.6e-05 Score=80.47 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
..+..+|||||||.+|++||..|.+ |.+|+|||+-++.++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3557899999999999999999999 999999999887664
No 181
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00027 Score=69.04 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC-CceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV-GARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~-G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
.-+|++|++|+.-++|.-|++ +|+|..|+|+. |+.+.+. =..|.+--|-+-++.+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence 347999999999999988766 99999999865 6666664 36788888888888888755
No 182
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.58 E-value=5.6e-05 Score=79.01 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+.|||||||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 446899999999999999999999 999999999753
No 183
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.58 E-value=5e-05 Score=79.72 Aligned_cols=35 Identities=34% Similarity=0.596 Sum_probs=32.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..+||+||||+|++|-++|.+|++ |+||+++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999 98899999995
No 184
>PLN02463 lycopene beta cyclase
Probab=97.56 E-value=5.7e-05 Score=79.76 Aligned_cols=35 Identities=26% Similarity=0.487 Sum_probs=32.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
...|||||||+|+||+++|..|++ |++|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 446999999999999999999999 99999999864
No 185
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.55 E-value=6.3e-05 Score=80.54 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=31.1
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
++||+||||||++|+.+|.+|++ |++|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999 9999999994
No 186
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.55 E-value=0.00036 Score=68.30 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=32.0
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
...||++|||+|.+|..+|+++|+ |.||.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 458999999999999999999999 9999999976
No 187
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.54 E-value=0.0014 Score=68.06 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=46.8
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI 276 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~ 276 (570)
..+..||++..+++|++|.++.++ +.+.++++++. .+|+...|.+. ..+.|++.-|.+
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~-~~g~~~~i~l~--~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIE-QDGKEETIDLG--PDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEE-cCCCeeEEEeC--CCCEEEEECCcc
Confidence 556789999999999999998654 44578888887 57877776654 789999999975
No 188
>PRK14694 putative mercuric reductase; Provisional
Probab=97.54 E-value=6.4e-05 Score=80.55 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=33.5
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
....||+||||+|+||+++|.+|++ |++|+|+|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 3568999999999999999999999 99999999975
No 189
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.54 E-value=6.1e-05 Score=83.02 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=31.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
++||+||||+|++|..+|.++++ |+||+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 47999999999999999999999 9999999975
No 190
>PLN02676 polyamine oxidase
Probab=97.54 E-value=0.00012 Score=78.56 Aligned_cols=39 Identities=36% Similarity=0.382 Sum_probs=34.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~~~ 77 (570)
...+||||||+|.+|+++|++|++ |. +|+|||+.+...+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 446799999999999999999999 97 6999999887654
No 191
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.53 E-value=6.5e-05 Score=80.46 Aligned_cols=32 Identities=38% Similarity=0.617 Sum_probs=30.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+||+||||||++|+.+|.+|++ |.+|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4899999999999999999999 9999999993
No 192
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.53 E-value=0.00023 Score=72.56 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=38.1
Q ss_pred HHhhh-hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 210 ADLLE-YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 210 ~~~l~-~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
..|+. .+++-.-.+..+++|++|..+.++ +. ....|++++.+|....+. ++.||||+| .+|.+
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~-~~-~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~i 161 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDG-DE-DLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEET-TE-EEEEEEEEETTS-EEEEE-----ESEEEE------EE--
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCC-Cc-cEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCCC
Confidence 34555 445555458899999999987752 11 456677766677666664 799999999 45543
No 193
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=5.9e-05 Score=75.24 Aligned_cols=34 Identities=41% Similarity=0.685 Sum_probs=30.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG 73 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~ 73 (570)
+.|||||||||+||++||..+++ +++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 46999999999999999999999 988 77777764
No 194
>PRK13748 putative mercuric reductase; Provisional
Probab=97.52 E-value=6.9e-05 Score=82.37 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+||+||||+|++|+.+|.+|++ |++|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999 99999999873
No 195
>PRK09897 hypothetical protein; Provisional
Probab=97.52 E-value=0.00067 Score=73.03 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.6
Q ss_pred ccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~ 75 (570)
.+|+|||+|++|+.+|.+|.+ + ++|.|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 479999999999999999987 3 699999997643
No 196
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.51 E-value=6.5e-05 Score=78.41 Aligned_cols=33 Identities=33% Similarity=0.615 Sum_probs=31.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999 99999999875
No 197
>PLN02507 glutathione reductase
Probab=97.49 E-value=5.7e-05 Score=81.37 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
..+||+||||+|++|..+|.+|++ |+||+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 457999999999999999999999 999999996
No 198
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.48 E-value=8.3e-05 Score=77.73 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=30.4
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
||||||+|++|+++|+.|++ |++|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999864
No 199
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.48 E-value=7.3e-05 Score=80.07 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=31.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
||+||||||++|..+|.+|++ |++|+|+|++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 799999999999999999999 999999999753
No 200
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.48 E-value=8e-05 Score=80.45 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
-||||||||.+|+++|..|++ |++|+||||....++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 589999999999999999999 999999999987654
No 201
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.47 E-value=7.7e-05 Score=81.51 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=32.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+.|||||||||+||+.+|.+|++ |++|+|+|++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF 38 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 45999999999999999999999 999999999753
No 202
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.45 E-value=5.6e-05 Score=71.94 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=42.5
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
+.++.|++++.+ +|..+. |+.+ |+++|-.....+..+.. ....+|||+|. ||++||..-+|
T Consensus 157 a~k~~~V~lv~G-kv~ev~-dEk~----r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 157 AEKRGGVKLVFG-KVKEVS-DEKH----RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHhhcCeEEEEe-eeEEee-cccc----cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhcccccc
Confidence 445667999988 777776 4343 88887765323333333 36889999999 99999987654
No 203
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.45 E-value=8.8e-05 Score=76.98 Aligned_cols=32 Identities=41% Similarity=0.646 Sum_probs=29.8
Q ss_pred cEEEECCCCchhHHHHhh--hc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATL--SQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~L--a~-g~~VlvLE~G~~ 74 (570)
||||||+|+||+++|.+| ++ |.+|+|||+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 66 999999998764
No 204
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.45 E-value=8.5e-05 Score=74.49 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=30.6
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
||++|||+|++|+.+|..|++ |.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999885
No 205
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.42 E-value=9.7e-05 Score=79.30 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=30.8
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
.+||+||||+|++|+.+|.+|++ |++|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 47999999999999999999999 999999998
No 206
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.41 E-value=9.8e-05 Score=77.17 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=31.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999 999999999863
No 207
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.41 E-value=0.00013 Score=78.18 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=30.9
Q ss_pred CcccEEEECCCCchhHHHHhhhc--cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G 72 (570)
.+||+||||+|++|..+|.++++ |++|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999 6999999985
No 208
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.41 E-value=0.0001 Score=77.44 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=30.7
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.+||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5899999999999999999999 9999999986
No 209
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.40 E-value=0.00011 Score=76.61 Aligned_cols=33 Identities=42% Similarity=0.654 Sum_probs=31.0
Q ss_pred cEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~ 75 (570)
||||||+|++|+++|..|++ | .+|+|+||.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999998643
No 210
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.38 E-value=0.00011 Score=76.30 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=30.7
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999 99999999875
No 211
>PLN02268 probable polyamine oxidase
Probab=97.37 E-value=0.00013 Score=77.39 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=32.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
+|||||+|.+|+++|++|.+ |.+|+|||+.++.++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 79999999999999999999 999999999988765
No 212
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.36 E-value=0.00013 Score=78.63 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=30.9
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
..||+||||+|+||+.+|.+|++ |++|+|+|++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 36999999999999999999999 9999999973
No 213
>PRK14727 putative mercuric reductase; Provisional
Probab=97.29 E-value=0.0002 Score=76.99 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=32.9
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.+||+||||+|++|..+|.+|++ |.+|+|+|++...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 46999999999999999999999 9999999997533
No 214
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00023 Score=72.67 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
.+..||||||+|.+||++|++|.+ |++|+|||..+...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 567899999999999999999999 999999999876553
No 215
>PRK10262 thioredoxin reductase; Provisional
Probab=97.28 E-value=0.00018 Score=73.02 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=32.2
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
..+.+||+|||+|+||+.+|..|++ |.+|+++|+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 4678999999999999999999999 9999999864
No 216
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.27 E-value=0.00018 Score=76.72 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=31.9
Q ss_pred cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~ 77 (570)
+|+|||||.+|+++|++|++ | .+|+|||+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 58999999999999999999 8 89999999877654
No 217
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.27 E-value=0.00077 Score=68.81 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=41.7
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
++..+.+.|++++.+++|+.|..+++ ++++|... +| ++ .++.||+|+|+ ++++|
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~-----~a~~vV~a~G~-~~~~l 196 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DV-----QADQVVLAAGA-WAGEL 196 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EE-----ECCEEEEcCCh-hhhhc
Confidence 45567788999999999999998665 78888653 45 24 37999999998 56654
No 218
>PRK07233 hypothetical protein; Provisional
Probab=97.26 E-value=0.0002 Score=75.94 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=32.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
+|||||||.+|+++|+.|++ |.+|+|||+.+..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 58999999999999999999 999999999987765
No 219
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.25 E-value=0.00021 Score=74.89 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=32.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.+.||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 45799999999999999999999 999999999863
No 220
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.24 E-value=0.0002 Score=74.89 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=31.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+||+||||+|.+|+++|..|++ |++|+|+|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999 99999999984
No 221
>PRK06996 hypothetical protein; Provisional
Probab=97.24 E-value=0.00024 Score=74.45 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=31.7
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-c----CeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-N----ATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g----~~VlvLE~G~ 73 (570)
.++|||+|||+|++|+++|..|++ | ++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 557899999999999999999998 7 4799999975
No 222
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.22 E-value=0.0002 Score=76.00 Aligned_cols=32 Identities=47% Similarity=0.767 Sum_probs=29.9
Q ss_pred ccEEEECCCCchhHHHHhhhc-----cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-----NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvLE~G~ 73 (570)
|||||||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 89999999964
No 223
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.18 E-value=0.00025 Score=74.21 Aligned_cols=33 Identities=48% Similarity=0.632 Sum_probs=30.4
Q ss_pred CcccEEEECCCCchhHHHHhhhc----cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ----NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G 72 (570)
+.+||+|||+|++|+++|..|++ |.+|+|+||-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 45899999999999999999975 8999999985
No 224
>PRK06753 hypothetical protein; Provisional
Probab=97.18 E-value=0.00024 Score=73.73 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=30.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 79999999999999999999 999999999974
No 225
>PLN02576 protoporphyrinogen oxidase
Probab=97.17 E-value=0.00036 Score=75.51 Aligned_cols=39 Identities=31% Similarity=0.320 Sum_probs=34.6
Q ss_pred CCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~~~ 77 (570)
...+||+|||||.+|+++|++|++ |.+|+|||+.+..++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 445799999999999999999998 799999999987654
No 226
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.16 E-value=0.0055 Score=60.34 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=34.5
Q ss_pred cccEEEECCCCchhHHHHhhhccCeEEEEccCCCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGSPYENP 79 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~~~~~~ 79 (570)
.-++-|||+|.+|+++|+.|+.-.+|.+.|++...++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCcc
Confidence 347999999999999999999989999999999876533
No 227
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.15 E-value=0.00034 Score=72.44 Aligned_cols=32 Identities=38% Similarity=0.651 Sum_probs=29.9
Q ss_pred cEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~ 74 (570)
||||||+|+||+++|.+|++ |++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 89999999999999999986 899999999864
No 228
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.14 E-value=0.00031 Score=65.92 Aligned_cols=31 Identities=42% Similarity=0.734 Sum_probs=29.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
||||||+|+||+.+|.+|++ +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999 99999998765
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.10 E-value=0.018 Score=60.39 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=30.0
Q ss_pred ccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~ 75 (570)
.+|||||+|+||+.+|..|++ | .+|+|+++.+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 479999999999999999998 6 489999988654
No 230
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.09 E-value=0.00034 Score=75.11 Aligned_cols=32 Identities=38% Similarity=0.643 Sum_probs=30.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+||+||||+|++|..+|.+|++ |++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999999 9999999974
No 231
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00039 Score=72.35 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=32.3
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
|+|+|+|.||+++|++||+ |++|.|+|++++.++
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 8999999999999999999 999999999998765
No 232
>PLN02568 polyamine oxidase
Probab=97.08 E-value=0.00047 Score=74.74 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-c-----CeEEEEccCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-N-----ATVLLLEKGGSPYE 77 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g-----~~VlvLE~G~~~~~ 77 (570)
+..||||||+|.+|+++|.+|++ | .+|+|||+.....+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 35799999999999999999998 7 89999999987654
No 233
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.07 E-value=0.0037 Score=65.18 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=38.1
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL 282 (570)
+...+.+ |++++++++|+.|..+++ + ..| +..+|.. + .++.||+|+|+ +++.|+
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~-----~-~~v--~t~~g~~--~-----~a~~vV~a~G~-~~~~l~ 194 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGE-----G-WQL--LDANGEV--I-----AASVVVLANGA-QAGQLA 194 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCC-----e-EEE--EeCCCCE--E-----EcCEEEEcCCc-cccccc
Confidence 4456677 999999999999987654 3 234 3346642 3 37999999998 565544
No 234
>PRK07538 hypothetical protein; Provisional
Probab=97.06 E-value=0.00037 Score=73.52 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=30.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
||+|||+|++|+++|..|++ |++|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 89999999999999999999 999999999753
No 235
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.05 E-value=0.0042 Score=63.77 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCCCcceeeeeEECCCCccccHHH-hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEE
Q 008331 168 SAVRDGLLEAGVLPYNGFTFDHIYGTKVSGTIFDEDGHRHSAAD-LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHC 246 (570)
Q Consensus 168 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~G 246 (570)
..+.+.+.+.|++... + ..+ .++|......+... ++..+++.|++|+++++|+.| +++ . ..
T Consensus 57 ~d~~~fF~~~Gi~~~~----e-~~g-----rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~~ 118 (376)
T TIGR03862 57 VALQDWARGLGIETFV----G-SSG-----RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-LR 118 (376)
T ss_pred HHHHHHHHHCCCceEE----C-CCC-----EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-EE
Confidence 5677888889984210 1 111 23333333333333 556778899999999999999 322 2 34
Q ss_pred EEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 247 VTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 247 V~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
|.+. .+. ..+ .++.||||+|+...|.+
T Consensus 119 v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 119 FETP--DGQ-STI-----EADAVVLALGGASWSQL 145 (376)
T ss_pred EEEC--CCc-eEE-----ecCEEEEcCCCcccccc
Confidence 5543 222 123 47999999999877754
No 236
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.05 E-value=0.00052 Score=76.08 Aligned_cols=37 Identities=38% Similarity=0.493 Sum_probs=33.2
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGS 74 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~ 74 (570)
+.+++||+|||+|++|+++|..|++ |.+|+||||-+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 3458999999999999999999998 899999998753
No 237
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.02 E-value=0.00053 Score=73.07 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=27.1
Q ss_pred cccEEEECCCCchhHHHHhhhccCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~ 73 (570)
+||+||||+|++|..+|.+++ |+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHHC-CCeEEEEeCCC
Confidence 599999999999988865432 99999999864
No 238
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.01 E-value=0.00044 Score=71.46 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=31.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
-||+|||||.+|+.+|..||+ |++|.|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 489999999999999999999 9999999987643
No 239
>PRK07846 mycothione reductase; Reviewed
Probab=96.97 E-value=0.00062 Score=72.53 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=28.3
Q ss_pred cccEEEECCCCchhHHHHhhhccCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQNATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~g~~VlvLE~G~~ 74 (570)
+||+||||+|++|..+|.++ .|+||+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 48999999999999888763 3999999998753
No 240
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.94 E-value=0.00062 Score=72.92 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=32.4
Q ss_pred ccEEEECCCCchhHHHHhhhc-----cCeEEEEccCCCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-----NATVLLLEKGGSPYE 77 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-----g~~VlvLE~G~~~~~ 77 (570)
.||+|||||.+|+++|++|++ |.+|+|+|+.+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 589999999999999999997 589999999887654
No 241
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.90 E-value=0.00053 Score=70.02 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=33.7
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
.-+++|||+|.+|+.||..||+ |.+|.|+||.+..++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 3479999999999999999999 999999999987654
No 242
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.89 E-value=0.00084 Score=76.88 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
..+||+|||||+||+++|+.|++ |++|+|+|+.+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence 45899999999999999999999 99999999986543
No 243
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.87 E-value=0.00077 Score=78.60 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=48.3
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
++...++.|+++++++.|+++.-+ + ++.+|++...+|...++ .++.|+++.|..-...|+...|.
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcCC
Confidence 344556789999999999998643 2 67788887434544555 47999999998888888777664
No 244
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.85 E-value=0.00075 Score=72.32 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.3
Q ss_pred cEEEECCCCchhHHHHhhhc-c------CeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N------ATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g------~~VlvLE~G~~~~~ 77 (570)
+|||||||.+|+++|++|++ | .+|+|||+.+..++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 59999999999999999997 4 68999999887654
No 245
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.85 E-value=0.0009 Score=73.51 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+.++|+|||||++|+++|..|++ |.+|.|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999 99999999975
No 246
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.83 E-value=0.021 Score=59.34 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=44.1
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCCC
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGVG 288 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGiG 288 (570)
+....++.|++++++++|+++..+++ . ..|+. .+|+. + .++.||+|+|.-..+.++..+|+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCCCC
Confidence 33455678999999999999986543 2 23444 35653 4 379999999987667787777763
No 247
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.00092 Score=65.11 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=32.1
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+|||+|||+|.||+++|.+|++ |+++.++-+|-.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6999999999999999999999 999999999863
No 248
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0011 Score=64.56 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 37 PLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 37 ~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
....+||.||||+|.+|+++|.++|. |.+|.+|+-
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 34668999999999999999999999 999999984
No 249
>PRK12831 putative oxidoreductase; Provisional
Probab=96.77 E-value=0.0012 Score=70.43 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
....||+|||+|++|+.+|..|++ |++|+|+|+....
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 456899999999999999999999 9999999987643
No 250
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.75 E-value=0.043 Score=49.18 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.3
Q ss_pred EEECCCCchhHHHHhhhc-c-----CeEEEEccCCC
Q 008331 45 IIVGGGTSGCPLAATLSQ-N-----ATVLLLEKGGS 74 (570)
Q Consensus 45 IIVGsG~aG~~~A~~La~-g-----~~VlvLE~G~~ 74 (570)
.|||+|++|++++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 489999999999999976 3 58999998543
No 251
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.70 E-value=0.0017 Score=64.47 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
.+||+||||+|++|-++|.++++ |++...+|+.....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LG 75 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLG 75 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccC
Confidence 58999999999999999999999 99999999955443
No 252
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.69 E-value=0.0014 Score=70.09 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
++||||+|+||.++|.+|++ |++|+|+||+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 68999999999999999999 9999999998643
No 253
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.67 E-value=0.0012 Score=69.20 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=30.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
+|+|||||++|+++|..|++ |.+|.|+||.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 69999999999999999999 999999999753
No 254
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.65 E-value=0.0013 Score=68.44 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.5
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.||+|||+|.+|+.+|..||+ |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 379999999999999999999 999999998764
No 255
>PLN02529 lysine-specific histone demethylase 1
Probab=96.65 E-value=0.0016 Score=72.52 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=34.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
....||+|||+|++|+++|..|++ |++|+|||+.+..++
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 456899999999999999999999 999999999876554
No 256
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.63 E-value=0.0015 Score=65.98 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=30.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+-+|||||||.+|++.|..|.+ |.+|+|+|+-.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3479999999999999999999 99999999843
No 257
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.63 E-value=0.0017 Score=72.65 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=34.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
....+|+|||+|.+|+++|+.|++ |.+|+|+|+....++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 446899999999999999999999 999999999876653
No 258
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.59 E-value=0.002 Score=69.05 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
....+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G 179 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG 179 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 345799999999999999999999 99999999987653
No 259
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.58 E-value=0.0017 Score=67.73 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=31.4
Q ss_pred EEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE 77 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~ 77 (570)
++|||||.+|+++|++|.+ + ..|.|+|++++.++
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 7999999999999999999 7 89999999987664
No 260
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.56 E-value=0.0016 Score=67.98 Aligned_cols=42 Identities=31% Similarity=0.352 Sum_probs=32.4
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP 79 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~ 79 (570)
++++|||||+|.|..-+++|..|+. |.|||.||+.+++++..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~ 43 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEW 43 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCch
Confidence 3678999999999999999999999 99999999999987643
No 261
>PLN02612 phytoene desaturase
Probab=96.52 E-value=0.0023 Score=70.14 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
...+|+|||+|.+|+++|++|++ |.+|+|+|+.....+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 46799999999999999999999 999999999876543
No 262
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.49 E-value=0.0024 Score=67.97 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=33.3
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
...+||+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 346899999999999999999999 9999999997644
No 263
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.47 E-value=0.0028 Score=49.72 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=30.1
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 7999999999999999999 9999999999754
No 264
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.45 E-value=0.0022 Score=68.73 Aligned_cols=65 Identities=18% Similarity=0.285 Sum_probs=43.6
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL 282 (570)
+.+..++.|.+|+++++|++|..++++++..++++|.+.+.++. ..+ .++.||+|+..-.+.+||
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence 34445568999999999999998752101113788888532221 224 379999999987776665
No 265
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.37 E-value=0.0031 Score=64.72 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=32.7
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE 77 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~ 77 (570)
+.-+||||||+||++||.+|-+ | .+|+|+|+.++.++
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 4469999999999999999998 5 78999999987764
No 266
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.34 E-value=0.0027 Score=67.02 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=29.3
Q ss_pred cEEEECCCCchhHHHHhhhc-c-CeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~ 74 (570)
.|+|||+|++|+++|..|++ | .+|.|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 58999999999999999999 7 69999999754
No 267
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.34 E-value=0.0035 Score=66.97 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
....+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 346799999999999999999999 9999999998754
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.31 E-value=0.0033 Score=70.32 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=33.2
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
...+|+|||||++|+++|..|++ |++|+|+|+.+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45699999999999999999999 99999999986543
No 269
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.30 E-value=0.0029 Score=73.02 Aligned_cols=38 Identities=24% Similarity=0.091 Sum_probs=33.7
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
...+|+|||||+||+++|..|++ |++|+|+|+.+...+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG 343 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGG 343 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCc
Confidence 35789999999999999999999 999999999875443
No 270
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.27 E-value=0.0037 Score=71.44 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
...+|+|||||+||+++|+.|++ |++|+|+|+.+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence 45689999999999999999999 99999999987544
No 271
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.26 E-value=0.0047 Score=65.81 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=33.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY 76 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~ 76 (570)
.....|+|||||+||+.+|..|++ |.+|.|+|+-+...
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 345689999999999999999984 89999999998654
No 272
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.26 E-value=0.0033 Score=73.14 Aligned_cols=37 Identities=24% Similarity=0.200 Sum_probs=33.4
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
...+|+|||||+||+++|..|++ |++|+|+|+.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 35799999999999999999999 99999999987554
No 273
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.22 E-value=0.0041 Score=70.68 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
...||+|||||+||+++|..|++ |++|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46799999999999999999999 999999998654
No 274
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.19 E-value=0.0044 Score=62.42 Aligned_cols=37 Identities=49% Similarity=0.749 Sum_probs=32.1
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc-----cCeEEEEccCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ-----NATVLLLEKGGS 74 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~-----g~~VlvLE~G~~ 74 (570)
..+.|||||||+|+.|.++|..|.. .+||++||.+..
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3458999999999999999999976 479999999954
No 275
>PLN02487 zeta-carotene desaturase
Probab=96.18 E-value=0.0052 Score=66.85 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=44.4
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL 282 (570)
+.+..++.|.+|++++.|++|..+.++++..+++||++.. ++....+ .++.||+|++.....+||
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 3345667899999999999999985321112589998852 3332334 369999999976555544
No 276
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.16 E-value=0.076 Score=60.85 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=45.4
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
....++.|+++++++.|++|..++.+ .+..|.+. +|+. + .++.||+|+|.--...|+..+|+
T Consensus 194 ~~~L~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 194 RRKIESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcCc
Confidence 34556789999999999999765432 45556654 6653 4 47999999998777777767775
No 277
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.12 E-value=0.044 Score=62.53 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=44.0
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
....++.|+++++++.|++|..+ + ++.+|.+. +|+. + .++.||+|+|.--.+.|+..+|+
T Consensus 189 ~~~l~~~GV~v~~~~~v~~i~~~-~-----~~~~v~~~--dG~~--i-----~~D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 189 QRELEQKGLTFLLEKDTVEIVGA-T-----KADRIRFK--DGSS--L-----EADLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHHHHcCCEEEeCCceEEEEcC-C-----ceEEEEEC--CCCE--E-----EcCEEEECCCCCcCcHHHHhcCC
Confidence 34556789999999999998643 2 56677775 5653 3 37999999997666666666665
No 278
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.00 E-value=0.0069 Score=62.34 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=36.4
Q ss_pred eeeecccCCCCCCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 28 TFVKDATSAPLISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 28 ~~~~~~~~~~~~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.|+++.... ....+|+|||+|++|+.+|..|++ |.+|.|+|+.+..
T Consensus 7 ~~~~~~~~~--~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 7 AFMCKEKPP--PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred hhhcccCCC--CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 455543332 234589999999999999999999 9999999998754
No 279
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.98 E-value=0.035 Score=59.45 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=28.9
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-+++|||+|..|+-+|..|++ |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 479999999999999999999 99999999875
No 280
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.97 E-value=0.0069 Score=67.55 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=33.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
...+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G 229 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG 229 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45799999999999999999999 99999999987643
No 281
>PLN03000 amine oxidase
Probab=95.95 E-value=0.0061 Score=68.53 Aligned_cols=38 Identities=34% Similarity=0.369 Sum_probs=34.6
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
...||+|||+|.+|+.+|..|++ |++|+|+|+.+...+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 45799999999999999999999 999999999887654
No 282
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.0068 Score=61.99 Aligned_cols=34 Identities=41% Similarity=0.781 Sum_probs=31.0
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+..|||||||+|-|||-+|..+|+ |.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 678999999999999999999999 9999998644
No 283
>PLN02976 amine oxidase
Probab=95.90 E-value=0.0071 Score=70.61 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=34.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
...+|++|||+|++|+.+|+.|++ |.+|+|||+.+...+
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 345899999999999999999999 999999999766543
No 284
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.79 E-value=0.0086 Score=64.08 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=32.8
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 45799999999999999999999 9999999998754
No 285
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.63 E-value=0.068 Score=57.30 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=35.4
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ 280 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~ 280 (570)
++.|++|+++++|+++..+++ .+ .|.+.+.+|+..++ .++.||+|+|..-...
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQEL-----EADKVLQAIGFAPRVE 276 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEE-----EeCEEEECcCcccCCC
Confidence 346899999999999975433 22 34444235654455 3799999999654443
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.59 E-value=0.012 Score=63.37 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=32.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
..+|+|||+|++|+.+|..|++ |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4699999999999999999999 9999999998753
No 287
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.59 E-value=0.0084 Score=68.20 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=29.5
Q ss_pred cEEEECCCCchhHHHHhhhc---cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~ 74 (570)
+|+|||+|++|+++|..|++ |++|+|+||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 69999999999999999998 589999999874
No 288
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.49 E-value=0.011 Score=66.96 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=31.6
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
....|+|||+|+||+.+|+.|++ |++|.|+|+...
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 45689999999999999999999 999999998643
No 289
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.43 E-value=0.013 Score=65.36 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=33.5
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
...+|+|||+|++|+++|..|++ |++|+|+|+.+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G 346 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG 346 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 35689999999999999999999 99999999998654
No 290
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.37 E-value=0.014 Score=61.53 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=32.0
Q ss_pred cccEEEECCCCchhHHHHhhh-c-cCeEEEEccCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLS-Q-NATVLLLEKGGSPYE 77 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La-~-g~~VlvLE~G~~~~~ 77 (570)
..-|.|||||+||+.+|.+|+ + |.+|.|+||-+.+.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 446999999999999999875 5 999999999987654
No 291
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=95.36 E-value=0.08 Score=56.91 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=36.4
Q ss_pred CCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHH
Q 008331 218 PEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQ 280 (570)
Q Consensus 218 ~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~ 280 (570)
+.|++++++++|++|..+++ .+ .|++.+.+|+...+ .++.||+|.|..-...
T Consensus 236 ~~gi~i~~~~~v~~i~~~~~-----~v-~v~~~~~~g~~~~i-----~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 236 KQGLDIHLGVKIGEIKTGGK-----GV-SVAYTDADGEAQTL-----EVDKLIVSIGRVPNTD 287 (475)
T ss_pred HcCcEEEeCcEEEEEEEcCC-----EE-EEEEEeCCCceeEE-----EcCEEEEccCCccCCC
Confidence 46899999999999976544 33 35555444654455 4799999999754444
No 292
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.31 E-value=0.12 Score=55.60 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=27.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|.+|+-+|..|++ |.+|.|+|+++
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 68999999999999999988 88999998775
No 293
>PRK12831 putative oxidoreductase; Provisional
Probab=95.23 E-value=0.12 Score=55.41 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.|+|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 69999999999999999999 9999999865
No 294
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.19 E-value=0.016 Score=63.73 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=32.7
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
..-+|+|||+|++|+.+|..|++ |++|+|+|+.+...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 34589999999999999999999 99999999976543
No 295
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.13 E-value=0.11 Score=54.00 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=27.9
Q ss_pred ccEEEECCCCchhHHHHhhhc----cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ----NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~ 74 (570)
++|.|||+|++|..+|..|.+ ..+|.|+|+-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 689999999999999999987 234999997654
No 296
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.08 E-value=0.17 Score=53.87 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.|+|||+|..|+-+|..|++ |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 99999998763
No 297
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.96 E-value=0.3 Score=53.12 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=44.1
Q ss_pred CCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
.|+++++++.|+++..+++ ++++|++.+. +|+..++ .++.|++|.|..-.+.+|..+
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhhh
Confidence 5899999999999986544 8889998864 3555556 479999999987767776543
No 298
>PRK13984 putative oxidoreductase; Provisional
Probab=94.92 E-value=0.027 Score=62.55 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
....+++|||+|++|+.+|..|++ |.+|+|+|+.+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 346789999999999999999999 99999999987543
No 299
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.78 E-value=0.18 Score=53.65 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.1
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-.++|||+|..|+-+|..|++ |.+|.++|+++
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 369999999999999999999 99999998764
No 300
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=94.70 E-value=0.038 Score=56.13 Aligned_cols=39 Identities=31% Similarity=0.333 Sum_probs=32.5
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPYE 77 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~~ 77 (570)
....+++|||+|.+|+++|+.|++ + ..|.|.|++++..+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 345689999999999999999999 5 45677999987654
No 301
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.67 E-value=0.42 Score=51.91 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHH
Q 008331 219 EKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLM 283 (570)
Q Consensus 219 ~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl 283 (570)
.|+++++++.|+++.-+++ ++++|++.+. +|+...+ .++.||+|.|..-.+.+|.
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 5899999999999976544 7888988753 3444455 4799999999776666664
No 302
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.42 E-value=0.032 Score=59.39 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=41.6
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
...+++.|++++++++|++|.. ++ ++..+.. ++.. + .++.||+|+|..-...+|..+|+
T Consensus 198 ~~~l~~~gI~v~~~~~v~~i~~-~~-----~~~~v~~---~~~~--i-----~~d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 198 EEELRENGVELHLNEFVKSLIG-ED-----KVEGVVT---DKGE--Y-----EADVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHHCCCEEEcCCEEEEEec-CC-----cEEEEEe---CCCE--E-----EcCEEEECcCCCcCHHHHHhcCc
Confidence 3456678999999999999953 22 4555543 2322 4 36899999998766778877776
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.37 E-value=0.034 Score=59.09 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=29.6
Q ss_pred cEEEECCCCchhHHHHhhhc---cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~ 75 (570)
.|||||+|+||+.+|.+|++ +.+|+|+|+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 59999999999999999987 4789999999754
No 304
>PRK10262 thioredoxin reductase; Provisional
Probab=94.16 E-value=0.65 Score=46.99 Aligned_cols=60 Identities=5% Similarity=0.080 Sum_probs=41.6
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecC--CceEEEEecCCCCceEEEcCCccccHHHHHHhCC
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHV--GARHRACLNNGGKNEIILSAGAIGSPQLLMLSGV 287 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~--G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~SGi 287 (570)
++.|+++++++.|+++.-+++ ++.+|++.+.. +...++ .++.||+|.|.--...|+ .+++
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh-hccc
Confidence 456899999999999976544 67788887432 333445 479999999975555543 3344
No 305
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.15 E-value=0.053 Score=54.61 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP 79 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~ 79 (570)
.++||+||||.|.-=+++|...++ |.+||=|++..+++++.
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~w 47 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNW 47 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcc
Confidence 568999999999999999999999 99999999999887643
No 306
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.035 Score=55.94 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=37.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENPN 80 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~~ 80 (570)
+++|||||+|.|.-=|+++..|+. |.+||.++|.+.+++...
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sa 44 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESA 44 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccc
Confidence 567999999999999999999999 999999999998876443
No 307
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=93.95 E-value=0.1 Score=54.66 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=30.0
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
..||.+|||+|.||+-+|..|+| |.++.++-+-
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl 87 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKL 87 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEecc
Confidence 35999999999999999999999 9999998764
No 308
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.93 E-value=0.06 Score=56.96 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
....+|||||+|.||+.+|.+|.. +.+|+|+|+.+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 345689999999999999999987 8999999988754
No 309
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=93.62 E-value=0.076 Score=53.18 Aligned_cols=35 Identities=37% Similarity=0.460 Sum_probs=30.7
Q ss_pred cEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~~ 77 (570)
-|+|||||+||..+|..|-+ +.+|-|.|+-+.+.+
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 69999999999999988876 699999999986543
No 310
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.53 E-value=0.52 Score=47.99 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=33.8
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc--cCeEEEEccCCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ--NATVLLLEKGGSP 75 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~--g~~VlvLE~G~~~ 75 (570)
+.+.+|+|.||-|+.-+.+|..|.+ +.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 3567999999999999999999999 5899999998753
No 311
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.091 Score=52.43 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=36.5
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYENP 79 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~~~ 79 (570)
..|||||+|.|.-=|+++.+|+- |.+||.+++.+.+++..
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~ 45 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTS 45 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccc
Confidence 47999999999999999999998 99999999999887643
No 312
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.74 E-value=0.15 Score=49.90 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=32.1
Q ss_pred CCCcccEEEECCCCchhHHHHhhhc--c-CeEEEEccCCCC
Q 008331 38 LISYYDYIIVGGGTSGCPLAATLSQ--N-ATVLLLEKGGSP 75 (570)
Q Consensus 38 ~~~~~DvIIVGsG~aG~~~A~~La~--g-~~VlvLE~G~~~ 75 (570)
....|.|+|||+|.+|+.+|.++.+ + -+|.|+|-....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 3568999999999999999999998 5 689999966543
No 313
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.69 E-value=0.16 Score=49.92 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-|.|||+|.||+-+|+.+|+ |.+|.+.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 48899999999999999999 999999997654
No 314
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.65 E-value=0.12 Score=53.46 Aligned_cols=32 Identities=16% Similarity=0.396 Sum_probs=28.5
Q ss_pred EEEECCCCchhHHHHhhhc----cCeEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ----NATVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~----g~~VlvLE~G~~~ 75 (570)
|||||+|+||+.+|.+|.+ +.+|+|+|+.+..
T Consensus 2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 8999999999999999963 6899999998764
No 315
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.21 E-value=0.14 Score=54.21 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=32.0
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
-.|-|||||++|+.+|..|+. |.+|++.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 579999999999999999999 99999999887544
No 316
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.56 E-value=1.1 Score=47.75 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=27.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cC-eEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G 72 (570)
.|+|||+|..|+-+|..|++ |. +|.|+++.
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 69999999999999999998 87 89999865
No 317
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.44 E-value=0.4 Score=50.40 Aligned_cols=58 Identities=14% Similarity=0.004 Sum_probs=43.6
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
+.+..++.|++++++++|+++..+++ +++.|.. .+|+...+. ++.||||+|.+.+..|
T Consensus 265 L~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~--~~g~~~~i~-----AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 265 LRRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWT--RNHGDIPLR-----ARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEe--eCCceEEEE-----CCEEEEeCCCcccCce
Confidence 44456678999999999999988765 6776663 356555564 7999999998866554
No 318
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=0.19 Score=46.63 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=28.1
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.|+|||||+|+-.+|..+++ .+|-+|.|-.
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 69999999999999999999 9999999954
No 319
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=90.78 E-value=0.19 Score=52.53 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=32.3
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPY 76 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~ 76 (570)
-+++|||+|..|+.+|..|++ |.+|.++|+.+...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 589999999999999999999 99999999997653
No 320
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.71 E-value=1.1 Score=51.12 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=27.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~ 73 (570)
.|||||+|..|+-+|..|.+ |.+ |.|+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 69999999999999999999 876 99998663
No 321
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.11 E-value=0.23 Score=44.04 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=28.1
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
++|+|+|+.|+..|.+|++ |.+|.++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 5899999999999999999 99999999885
No 322
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=89.88 E-value=0.42 Score=54.31 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=34.3
Q ss_pred CcccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 40 SYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 40 ~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
.-.-|-|||||++|+++|..|-+ |..|+|-||.++..+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 34679999999999999999999 999999999987664
No 323
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=89.75 E-value=0.12 Score=49.10 Aligned_cols=33 Identities=36% Similarity=0.630 Sum_probs=29.3
Q ss_pred EEEECCCCchhHHHHhhhc---cCeEEEEccCCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPY 76 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~ 76 (570)
+||||+|.||.++|..||. ..+||+|-+.+...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence 7999999999999999997 68999998887554
No 324
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=89.70 E-value=1.2 Score=44.72 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=38.7
Q ss_pred hhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331 214 EYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI 276 (570)
Q Consensus 214 ~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~ 276 (570)
...+.+++++-.+.+|++|.++... +++.+..+.+. .+++..++. ..+.|++..|.+
T Consensus 235 ~yL~~H~Vdf~~~~~Vedi~v~~t~-gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsi 291 (587)
T COG4716 235 TYLKSHGVDFTYDQKVEDIDVDDTP-GKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSI 291 (587)
T ss_pred HHHHHcCCceEeccEEeeeeeccCc-chhHHHHHHHh-cCcceeecC----CCceEEEeccee
Confidence 3567899999999999999998753 11222233322 355554444 779999999976
No 325
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.37 E-value=0.32 Score=46.44 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=29.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|-.|..+|..|++ |..|+++|+-..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 48999999999999999999 999999998753
No 326
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.14 E-value=0.36 Score=50.00 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=30.6
Q ss_pred cEEEECCCCchhHHHHhhhc-c--CeEEEEccCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGSPY 76 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~~~ 76 (570)
-+||||||.+|+.+|.+|.. . .+|+++|+-.+..
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 48999999999999999999 5 8899999998654
No 327
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=88.47 E-value=0.4 Score=50.19 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=30.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 69999999999999999999 9999999998643
No 328
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=88.26 E-value=1.1 Score=48.46 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=46.5
Q ss_pred CCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 203 ~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
.|...-+..+.+.+++.|.+|+++++|++|+.+++ ++++|.+.+. .|....+ .++.||+++-...+.+|
T Consensus 229 GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~l 298 (492)
T TIGR02733 229 GSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLEL 298 (492)
T ss_pred CcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHHh
Confidence 34333333455556668999999999999999876 7888887642 1222334 37899999887555443
No 329
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=87.75 E-value=1.6 Score=44.60 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=26.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-c--CeEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~~ 74 (570)
.....|+|||||-+++-++..|.+ + .+|.++=|++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 345679999999999999999988 5 48888887753
No 330
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=87.24 E-value=0.51 Score=50.10 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=30.4
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 69999999999999999999 9999999998643
No 331
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=87.17 E-value=0.54 Score=48.82 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.7
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
-.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 369999999999999999999 9999999998643
No 332
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=87.08 E-value=0.52 Score=43.94 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=27.1
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 479999999999999999999 999999988764
No 333
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.04 E-value=0.46 Score=42.56 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=27.5
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|+|+|..|.++|..|++ |.+|.|..+-.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6899999999999999999 99999998753
No 334
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.69 E-value=0.7 Score=42.66 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=24.4
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|||.|..|+.+|..||+ |.+|+.+|...
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899999999999999999 99999999764
No 335
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=86.57 E-value=0.57 Score=47.08 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=29.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+.|||+|+.|+..|.+|++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 58999999999999999999 99999999974
No 336
>PRK07846 mycothione reductase; Reviewed
Probab=86.40 E-value=0.62 Score=49.68 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=30.6
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 479999999999999999999 999999999864
No 337
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=86.10 E-value=2 Score=49.40 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=41.0
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-------CC-------------------ceEEEEecCCCCce
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-------VG-------------------ARHRACLNNGGKNE 268 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-------~G-------------------~~~~v~~~~~aa~~ 268 (570)
.|.+.|+++..++.-.+|+.|+++ ++++|++..- .| ...++ .++.
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~g----~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~ 719 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKYG----HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDI-----KTKT 719 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCCC----eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccc-----cCCE
Confidence 567789999999999999988765 9999988631 11 22333 5899
Q ss_pred EEEcCCccc
Q 008331 269 IILSAGAIG 277 (570)
Q Consensus 269 VVLaaGa~~ 277 (570)
||+|+|.--
T Consensus 720 vi~A~G~~~ 728 (1028)
T PRK06567 720 VIMAIGIEN 728 (1028)
T ss_pred EEEecccCC
Confidence 999999643
No 338
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=86.01 E-value=0.64 Score=49.80 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=30.4
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 369999999999999999999 999999999864
No 339
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=85.99 E-value=0.67 Score=49.54 Aligned_cols=32 Identities=34% Similarity=0.667 Sum_probs=29.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 69999999999999999999 999999999864
No 340
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.69 E-value=0.67 Score=49.71 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 69999999999999999999 9999999998743
No 341
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=85.69 E-value=0.68 Score=49.38 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=30.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 69999999999999999999 9999999998643
No 342
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.19 E-value=0.72 Score=42.37 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.7
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|||+|..|...|..++. |++|.+++..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 6899999999999999999 99999999764
No 343
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=85.05 E-value=0.78 Score=48.55 Aligned_cols=33 Identities=30% Similarity=0.582 Sum_probs=31.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
-++|||+|..|+-.|.-++. |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 49999999999999999999 9999999999865
No 344
>PRK06370 mercuric reductase; Validated
Probab=84.79 E-value=0.81 Score=48.99 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=30.8
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
-.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 369999999999999999999 9999999998643
No 345
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=84.50 E-value=0.73 Score=47.74 Aligned_cols=35 Identities=37% Similarity=0.649 Sum_probs=29.9
Q ss_pred cccEEEECCCCchhHHHHhhhc--c------------CeEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ--N------------ATVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~--g------------~~VlvLE~G~~~ 75 (570)
.-+++|||||+.|.=+|.+|++ . .+|.|+|+++..
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 3579999999999999999986 2 289999999865
No 346
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.16 E-value=0.9 Score=48.63 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 69999999999999999999 9999999998643
No 347
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.15 E-value=0.92 Score=48.62 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=30.1
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 68999999999999999999 9999999998643
No 348
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.96 E-value=0.91 Score=48.03 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=29.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 69999999999999999999 999999998864
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.91 E-value=0.9 Score=48.91 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=28.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 59999999999999999999 99999999764
No 350
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.86 E-value=0.96 Score=45.65 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+.|||+|..|+..|..|++ |.+|.++.|+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 59999999999999999999 99999998874
No 351
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=83.35 E-value=1 Score=48.18 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=30.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 59999999999999999999 9999999998643
No 352
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=83.29 E-value=0.95 Score=48.08 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=29.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 69999999999999999999 999999998863
No 353
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=83.00 E-value=1.1 Score=48.03 Aligned_cols=33 Identities=30% Similarity=0.584 Sum_probs=30.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 69999999999999999999 9999999998643
No 354
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.94 E-value=1 Score=48.10 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.6
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
|.|||.|.+|+++|..|++ |.+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 7999999999999999999 999999998754
No 355
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=82.92 E-value=2.2 Score=45.74 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=31.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
+++|||+|.+|+++|++|++ |.+|+|+|+.+...+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 48999999999999999999 999999999876654
No 356
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=82.65 E-value=0.89 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=24.5
Q ss_pred CchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 51 TSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 51 ~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
.||+++|++|++ |.+|+|||+.+..++
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 379999999999 999999999987765
No 357
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=82.60 E-value=1.1 Score=47.79 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=30.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 369999999999999999999 999999998864
No 358
>PLN02487 zeta-carotene desaturase
Probab=82.52 E-value=2.6 Score=46.14 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSPYE 77 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~~~ 77 (570)
..+|+|||+|.+|+++|++|++ |++|+|+|+.+...+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG 112 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGG 112 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCC
Confidence 4699999999999999999999 999999999886653
No 359
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=82.15 E-value=1.2 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 58999999999999999999 999999999864
No 360
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.15 E-value=1.1 Score=44.79 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=26.9
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
+.|||+|..|+..|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999 999999988
No 361
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.05 E-value=1.2 Score=37.21 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=26.8
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|||+|.|..|..+|..|.+ +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999 77999999775
No 362
>PRK04148 hypothetical protein; Provisional
Probab=81.84 E-value=1.4 Score=37.98 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=27.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 49999999 88888999999 999999997753
No 363
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=0.76 Score=44.81 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.8
Q ss_pred EEEECCCCchhHHHHhhhc-c-CeEEEEc
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N-ATVLLLE 70 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g-~~VlvLE 70 (570)
|||||+|-.|+-++..|.+ | .|+.+++
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred EEEEecCchhHHHHHHHHHhcCceEEEec
Confidence 8999999999999999999 8 5788887
No 364
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.59 E-value=1.3 Score=44.39 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=27.3
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+.|||+|..|+..|..|++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 7899999999999999999 9999999974
No 365
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=81.13 E-value=1.4 Score=49.08 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=30.4
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-.|..|++ |.+|.|+|+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 69999999999999999999 9999999998753
No 366
>PTZ00058 glutathione reductase; Provisional
Probab=80.98 E-value=1.4 Score=48.29 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=30.3
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 369999999999999999999 999999999864
No 367
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.85 E-value=1.3 Score=44.65 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=28.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.|.|||+|..|+..|..|++ |.+|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 48999999999999999999 99999999774
No 368
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=80.58 E-value=1 Score=37.08 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.3
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
--++|||+|..|..-+..|.+ |.+|.|+-..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 459999999999999999999 9999998754
No 369
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=80.37 E-value=1.4 Score=48.32 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=29.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|..|+-+|..|++ |.+|.++++++
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 69999999999999999999 99999999885
No 370
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.30 E-value=1.5 Score=38.17 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=27.5
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCe-EEEEccC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKG 72 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G 72 (570)
--++|||+|-+|-.++..|++ |.+ |.|+-|.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 469999999999999999999 866 9998875
No 371
>PLN02507 glutathione reductase
Probab=80.16 E-value=1.5 Score=47.37 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=29.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 69999999999999999999 999999998864
No 372
>PRK06116 glutathione reductase; Validated
Probab=80.10 E-value=1.6 Score=46.54 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=30.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 369999999999999999999 999999998864
No 373
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=80.09 E-value=1.6 Score=40.82 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
-++|||+|-.|...|..|.+ |.+|.|+++
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 59999999999999999999 999999974
No 374
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=79.96 E-value=1.6 Score=46.67 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=30.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.++|+++..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 68999999999999999999 9999999988643
No 375
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=79.80 E-value=1.7 Score=38.84 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=25.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEc
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLE 70 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE 70 (570)
-++|||+|..|.--|..|.+ |.+|.|+.
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 49999999999999999998 99999994
No 376
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=79.60 E-value=1.5 Score=50.13 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 58999999999999999999 9999999998754
No 377
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.44 E-value=1.6 Score=46.47 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=28.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|..|+.+|..|++ |++|.+.|+..
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999 99999999864
No 378
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=78.89 E-value=1.9 Score=45.87 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 69999999999999999999 999999999864
No 379
>PLN02546 glutathione reductase
Probab=78.26 E-value=1.8 Score=47.39 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=29.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 69999999999999999999 999999998864
No 380
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=78.20 E-value=2.3 Score=41.86 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-..-+|+|+|+|.+|.-+|.-+.- |.+|.+||...
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 445689999999999999999988 99999999774
No 381
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=78.02 E-value=2.2 Score=37.02 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cC-eEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~ 74 (570)
-|+|||+|.-|+.+|..|+. |. ++.+++....
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred EEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 48999999999999999999 95 7999997654
No 382
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=78.00 E-value=1.9 Score=49.65 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+++..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 58999999999999999999 9999999998753
No 383
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=77.97 E-value=1.9 Score=39.00 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..-|+|+|+|.+|.-||.-|.. |.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3569999999999999999999 99999999653
No 384
>PRK13748 putative mercuric reductase; Provisional
Probab=77.87 E-value=1.9 Score=47.47 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=28.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|..|+-+|..|++ |.+|.|+|+..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 69999999999999999999 99999999853
No 385
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.74 E-value=2.1 Score=43.69 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=27.9
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+.|||+|..|++.|.-||+ |..|+.+|.-.
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 7899999999999999999 99999999764
No 386
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.74 E-value=1.9 Score=44.56 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=29.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
..+++|||+|.+|..+|..|.. |.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4569999999999999999999 99999998753
No 387
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.70 E-value=2 Score=42.74 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=28.1
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-|.|||+|..|...|..|++ |.+|.++++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999999999999999999 99999998653
No 388
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.52 E-value=1.8 Score=43.15 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=28.0
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|||+|..|..+|..|++ |.+|.++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 7899999999999999999 99999998764
No 389
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=77.46 E-value=2.6 Score=42.92 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.6
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~~ 76 (570)
..-|+|||+|..|+.+|..|+. |. ++.|+|......
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~ 61 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEW 61 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccc
Confidence 3459999999999999999999 95 899999776443
No 390
>PRK14694 putative mercuric reductase; Provisional
Probab=77.46 E-value=2.3 Score=45.64 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|..|+-+|..|++ |.+|.|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 69999999999999999999 99999999753
No 391
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.38 E-value=2.1 Score=40.15 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=26.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEcc
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEK 71 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~ 71 (570)
-++|||+|..|..-|..|.+ |.+|.|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 58999999999999999999 999999974
No 392
>PRK14727 putative mercuric reductase; Provisional
Probab=77.29 E-value=2 Score=46.24 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=28.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 69999999999999999999 9999999975
No 393
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=77.22 E-value=2.5 Score=41.36 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=25.1
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-------CeEEEEccC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-------ATVLLLEKG 72 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-------~~VlvLE~G 72 (570)
..+++|||+|..|++.|..+.+ . .+|.|++--
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4589999999999999977765 3 577777633
No 394
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.12 E-value=2.8 Score=37.90 Aligned_cols=33 Identities=36% Similarity=0.420 Sum_probs=28.4
Q ss_pred CcccEEEECCCC-chhHHHHhhhc-cCeEEEEccC
Q 008331 40 SYYDYIIVGGGT-SGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 40 ~~~DvIIVGsG~-aG~~~A~~La~-g~~VlvLE~G 72 (570)
....++|||+|- +|..+|..|.+ |.+|.++.|-
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 345799999995 69999999999 9999999875
No 395
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=77.12 E-value=2.4 Score=41.43 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=30.7
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~ 76 (570)
..-|+|||.|..|+.+|..|++ | .++.|+|......
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~ 67 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCV 67 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecc
Confidence 3469999999999999999999 8 6899999665443
No 396
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=76.84 E-value=2.3 Score=39.74 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=27.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
-++|+|.|..|..+|.+|.+ |.+|++.++.
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 49999999999999999999 9999998754
No 397
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.63 E-value=2.5 Score=39.56 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
..-|+|||+|.-|+.+|..|+. |. ++.+++...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3469999999999999999999 97 699988664
No 398
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=76.37 E-value=3 Score=44.33 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=31.1
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGSP 75 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~~ 75 (570)
-.|+|||+|++|.-+|..|++ |.+|.|+=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 379999999999999999999 9999999988754
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=76.32 E-value=2.3 Score=43.46 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=28.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.+.|||+|..|...|..|++ |.+|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 48999999999999999999 9999999975
No 400
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=76.26 E-value=2.2 Score=43.74 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~ 73 (570)
.++|||+|..|+-+|..|++ |.+ |.|+|+..
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 59999999999999999988 886 99999764
No 401
>PLN02612 phytoene desaturase
Probab=76.10 E-value=4.5 Score=44.47 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=37.0
Q ss_pred hhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCc
Q 008331 213 LEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGA 275 (570)
Q Consensus 213 l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa 275 (570)
.+..++.|.+|+++++|++|..++++ ++++|++. +|+. + .++.||+|...
T Consensus 315 ~~~l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~-----~ad~VI~a~p~ 364 (567)
T PLN02612 315 VDHFQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--V-----EGDVYVSATPV 364 (567)
T ss_pred HHHHHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--E-----ECCEEEECCCH
Confidence 33344579999999999999987654 67777774 5653 3 37999998764
No 402
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.95 E-value=2.5 Score=42.60 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=27.8
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|||+|..|...|..++. |++|.+.+..+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999 99999999764
No 403
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=75.66 E-value=2.3 Score=42.70 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=27.6
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+.|+|+|+.|+..|++|++ |..|+++=|..
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 7899999999999999999 98899988775
No 404
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=75.65 E-value=2.5 Score=43.04 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~ 75 (570)
..-|+|||+|.-|+.+|..|+. |. ++.+++.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVE 60 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccC
Confidence 4569999999999999999999 86 89999986543
No 405
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=75.46 E-value=3.3 Score=36.24 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.2
Q ss_pred EEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~ 75 (570)
|+|||.|..|+.+|..|+. |. ++.+++.....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 7899999999999999999 85 79999876543
No 406
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.05 E-value=2.5 Score=41.99 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-|-|||+|..|...|..++. |.+|.++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48899999999999999999 99999999775
No 407
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=74.62 E-value=3.1 Score=44.46 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=29.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.|+|||+|.+|+-+|..|++ +.+|.++.+++
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 69999999999999999999 99999999874
No 408
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.57 E-value=2.7 Score=43.88 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=28.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.|+|+|.|..|..+|..|.. |.+|++.|..+
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 58999999999999999988 99999998764
No 409
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=74.51 E-value=3.8 Score=39.54 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=30.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~ 76 (570)
...|+|||+|..|+.+|..|+. | .++.+++......
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 4579999999999999999999 8 5788888765443
No 410
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=74.39 E-value=12 Score=37.00 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=43.0
Q ss_pred hhcCCC-CeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCccccHHHHHHh
Q 008331 214 EYADPE-KLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAIGSPQLLMLS 285 (570)
Q Consensus 214 ~~~~~~-g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~~tp~LLl~S 285 (570)
..+.+. |++++++++|+++..++ ++.+|++.+. .|+...+ .++.||+|+|....+.+|..+
T Consensus 184 ~~l~~~~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 184 DRLRKNPNIEFLWNSTVKEIVGDN------KVEGVKIKNTVTGEEEEL-----KVDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred HHHHhCCCeEEEeccEEEEEEccC------cEEEEEEEecCCCceEEE-----EccEEEEeeCCCCChHHHHHh
Confidence 334445 99999999999997532 5777777642 3555556 479999999976666666554
No 411
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=74.29 E-value=3.1 Score=42.87 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-c-CeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~ 73 (570)
+++|||+|..|.++|..||+ + .+|.+..|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 58999999999999999999 6 8999999874
No 412
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=74.11 E-value=2.6 Score=40.31 Aligned_cols=31 Identities=26% Similarity=0.549 Sum_probs=27.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cC---eEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA---TVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~---~VlvLE~G~ 73 (570)
-++|+|+|.+|..+|..|.+ |. +|.|++|-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 48999999999999999999 86 599999874
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.09 E-value=2.7 Score=42.63 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=27.2
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+.|||+|+-|...|..|++ |.+|.++.|.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 7899999999999999999 9999999874
No 414
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=73.85 E-value=3 Score=41.35 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=28.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
-.++|||+|.+|.++|..|++ |. +|.|+.|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 369999999999999999999 86 799998763
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.78 E-value=2.9 Score=41.68 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=27.8
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|||+|..|...|..|+. |.+|.+.|+.+
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8899999999999999999 99999999764
No 416
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=73.77 E-value=2.5 Score=45.45 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=28.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 59999999999999999999 9999999864
No 417
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.46 E-value=3.4 Score=37.69 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=28.0
Q ss_pred EEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~ 75 (570)
|+|||+|..|+.+|..|+. |. ++.+++.....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE 35 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 7899999999999999999 86 69999976543
No 418
>PTZ00052 thioredoxin reductase; Provisional
Probab=73.25 E-value=2.8 Score=45.31 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=28.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 69999999999999999999 9999999863
No 419
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=73.11 E-value=3.9 Score=40.53 Aligned_cols=34 Identities=26% Similarity=0.628 Sum_probs=29.4
Q ss_pred EEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE 77 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~ 77 (570)
|+|||+|.-|+.+|..|+. | .++.+++.+.....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~s 37 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYS 37 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccc
Confidence 7999999999999999999 8 57999997765443
No 420
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.11 E-value=3 Score=41.52 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=28.2
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.|.|||+|..|...|..|+. |.+|.+.++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 38899999999999999999 99999998753
No 421
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=72.99 E-value=3.5 Score=45.14 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=32.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYENPN 80 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~~~~ 80 (570)
..-|+|||+|.-|+.+|..|+. | .++.+++.+....+|..
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~ 379 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPV 379 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccc
Confidence 4569999999999999999999 9 57999998876554443
No 422
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=72.67 E-value=3.8 Score=35.62 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
++|+|+|..+..+|.-++. |++|.|+|--+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999998888 999999996643
No 423
>PRK07233 hypothetical protein; Provisional
Probab=71.98 E-value=5.5 Score=41.93 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=43.1
Q ss_pred CCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHHH
Q 008331 203 DGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQLL 282 (570)
Q Consensus 203 ~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~LL 282 (570)
.|.......+...+.+.|++|+++++|++|..+++ +++++.. +++. + .++.||+|+..-..++||
T Consensus 195 gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~~--~-----~ad~vI~a~p~~~~~~ll 259 (434)
T PRK07233 195 GGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGEE--E-----DFDAVISTAPPPILARLV 259 (434)
T ss_pred CCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCce--E-----ECCEEEECCCHHHHHhhc
Confidence 44333333355556677899999999999998765 5655542 4432 3 378999999875555443
No 424
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=71.97 E-value=3.5 Score=44.42 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=27.7
Q ss_pred cEEEECCCCchhHHHHhh---hc-cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATL---SQ-NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~L---a~-g~~VlvLE~G~~~ 75 (570)
.++|||+|..|+-+|..+ .+ |.+|.|+|+++..
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 699999999999988644 44 8999999998753
No 425
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=71.95 E-value=3.6 Score=41.30 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.0
Q ss_pred EEEECCCCchhHHHHhhhc-cC-eEEEEcc
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NA-TVLLLEK 71 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~-~VlvLE~ 71 (570)
+.|||+|..|+.+|..|+. |. +|+++|.
T Consensus 4 V~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7899999999999999999 75 8999997
No 426
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.29 E-value=3.6 Score=41.73 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=28.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-+.|||+|.-|...|..|++ |.+|.+..+..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 48999999999999999999 99999998853
No 427
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.66 E-value=3.5 Score=40.84 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=28.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+.|||+|..|...|..|+. |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 48999999999999999999 99999998653
No 428
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=70.65 E-value=3.9 Score=40.68 Aligned_cols=55 Identities=11% Similarity=-0.079 Sum_probs=44.9
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCccccHHH
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAIGSPQL 281 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~~tp~L 281 (570)
..++.|.-++++-+|.+..+.++ +|++|.++ ++....+ .++.+|||+|+|-|.-|
T Consensus 267 ~f~~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~tr--n~~diP~-----~a~~~VLAsGsffskGL 321 (421)
T COG3075 267 QFEQLGGLWMPGDEVKKATCKGG-----RVTEIYTR--NHADIPL-----RADFYVLASGSFFSKGL 321 (421)
T ss_pred HHHHcCceEecCCceeeeeeeCC-----eEEEEEec--ccccCCC-----ChhHeeeeccccccccc
Confidence 45678999999999999999887 99999987 5555555 48999999999866433
No 429
>PRK08328 hypothetical protein; Provisional
Probab=70.51 E-value=4.2 Score=38.96 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=28.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~ 74 (570)
..-|+|||+|..|+.+|..|+. | .++.+++....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3469999999999999999999 8 46888875543
No 430
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.45 E-value=3.7 Score=40.79 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=28.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-++|||.|..|..+|..|.. |.+|.+.+|..
T Consensus 153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 153 NVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999 99999998764
No 431
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=70.43 E-value=4.2 Score=42.99 Aligned_cols=33 Identities=36% Similarity=0.740 Sum_probs=28.2
Q ss_pred cEEEECCCCchhHHHHhhhc---------------cCeEEEEccCCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ---------------NATVLLLEKGGSP 75 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~---------------g~~VlvLE~G~~~ 75 (570)
.++|||+|+.|+-+|..|++ +.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 69999999999999988874 5789999998643
No 432
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.30 E-value=4.2 Score=38.05 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=30.0
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~ 75 (570)
+.-|+|||.|..|+.+|..|+. |. ++.+++.....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 4569999999999999999999 95 89999876543
No 433
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.25 E-value=4 Score=42.48 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=28.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-++|||.|..|..+|..|.. |.+|++.|..+
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 69999999999999999999 99999999765
No 434
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=70.18 E-value=3.8 Score=40.74 Aligned_cols=31 Identities=10% Similarity=0.304 Sum_probs=27.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cCe-EEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NAT-VLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~-VlvLE~G~ 73 (570)
-++|+|+|-+|.++|..|++ |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 48999999999999999999 976 99998753
No 435
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=69.90 E-value=4.6 Score=42.44 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=27.9
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+.|||.|..|+.+|..|++ |.+|.+.++..
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 7899999999999999999 99999998764
No 436
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=69.19 E-value=5 Score=37.90 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=29.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~ 74 (570)
..-|+|||+|..|+.+|..|+. |. ++.+++....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 3469999999999999999999 85 6999987653
No 437
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.03 E-value=4.2 Score=40.88 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=27.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.|.|||+|..|...|..|+. |.+|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998653
No 438
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=69.00 E-value=5.2 Score=38.58 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=28.8
Q ss_pred CCcccEEEECCCCchhHHHHhhhc-cC-----------eEEEEccCCC
Q 008331 39 ISYYDYIIVGGGTSGCPLAATLSQ-NA-----------TVLLLEKGGS 74 (570)
Q Consensus 39 ~~~~DvIIVGsG~aG~~~A~~La~-g~-----------~VlvLE~G~~ 74 (570)
.+...|+|||+|..|+.++..||+ |. ++.|++....
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 345679999999999999999997 62 7788775543
No 439
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.97 E-value=4.6 Score=40.61 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.5
Q ss_pred cEEEECCCCchhHHHHhhhc-c--CeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~ 73 (570)
.+.|||+|..|+++|..|+. | ..|+++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 48999999999999999999 8 4799999764
No 440
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=68.77 E-value=4.8 Score=38.48 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=28.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~ 74 (570)
..-|+|||+|..|+.+|..|+. | .++.+++....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 3469999999999999999999 8 47888886643
No 441
>PRK08223 hypothetical protein; Validated
Probab=68.56 E-value=5.9 Score=39.12 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=30.1
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~ 76 (570)
..-|+|||+|.-|+.+|..|+. | .++.+++......
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~ 64 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFEL 64 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcch
Confidence 4579999999999999999999 8 4788888665443
No 442
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=68.18 E-value=4.9 Score=42.27 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=28.4
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-+.|||.|..|+.+|..|++ |.+|.++++.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 38899999999999999999 99999999754
No 443
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.06 E-value=4.9 Score=38.55 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=27.7
Q ss_pred EEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~ 75 (570)
|+|||+|.-|+.++..|+. | .++.|++.....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve 35 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTID 35 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 7899999999999999999 8 578998866543
No 444
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.00 E-value=4.3 Score=43.18 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=27.8
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
++|+|+|..|.++|..|++ |.+|++.|+..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 7999999999999999999 99999998764
No 445
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=67.47 E-value=4.9 Score=40.56 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=28.4
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.+.|||+|..|+..|..|++ |.+|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 48999999999999999999 99999998764
No 446
>PRK06153 hypothetical protein; Provisional
Probab=67.35 E-value=6.8 Score=40.26 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=30.5
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~ 76 (570)
..-|.|||.|..|+.+|..||+ | .++.|++......
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~ 213 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQ 213 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecc
Confidence 3579999999999999999999 8 5799999765443
No 447
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.24 E-value=5.2 Score=39.93 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.8
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|.|||+|..|...|..|+. |.+|.+.++..
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8899999999999999999 99999998664
No 448
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=67.16 E-value=5.2 Score=38.75 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=29.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~ 75 (570)
+..|+|||.|.-|+.+|..|+. | .++.|++.....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 4679999999999999999999 8 478998866543
No 449
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=66.98 E-value=5.2 Score=41.96 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-++|+|.|..|..+|..|.. |.+|++.|..+
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 49999999999999999999 99999999764
No 450
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=66.98 E-value=5.3 Score=40.13 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=26.9
Q ss_pred EEEECCCCchhHHHHhhhc-c--CeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~ 73 (570)
+.|||+|..|.++|+.|+. | ..|.++++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7899999999999999999 7 4799999864
No 451
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.79 E-value=4.9 Score=40.19 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=29.7
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~~ 74 (570)
.-||-|||+|.+|.-+|..||- =..|.|||=.+.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 3589999999999999999997 678999996654
No 452
>PLN02494 adenosylhomocysteinase
Probab=66.71 E-value=5.6 Score=42.07 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=28.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|+|.|..|..+|.+|.. |.+|++.|+.+
T Consensus 256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999988 99999999765
No 453
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=66.68 E-value=4.4 Score=36.23 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=24.9
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-++|+|=|..|..+|.+|.. |.+|.|.|..|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 48999999999999999999 99999999765
No 454
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=65.67 E-value=5.4 Score=43.40 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=27.3
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
-++|+|+|.+|.++|+.|++ |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 48999999999999999999 9999999764
No 455
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=65.62 E-value=7.2 Score=40.94 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=28.5
Q ss_pred EEEECCCCchhHHHHhhhc-cC------eEEEEccCCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NA------TVLLLEKGGSPY 76 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~------~VlvLE~G~~~~ 76 (570)
|+|||+|..||-++..|+. |. ++.|++......
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~ 41 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEK 41 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccc
Confidence 7999999999999999999 87 788988765443
No 456
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=65.33 E-value=34 Score=35.35 Aligned_cols=140 Identities=22% Similarity=0.324 Sum_probs=0.0
Q ss_pred ccCCCCCCcccEEEECCCCchhHHHHhhhc---cCeEEEEccCCCCCCCCCcccccccccccCCCCCCCCCcccccCCcc
Q 008331 33 ATSAPLISYYDYIIVGGGTSGCPLAATLSQ---NATVLLLEKGGSPYENPNITDTGNFATTLLDPSPTSPSQQFISEDGV 109 (570)
Q Consensus 33 ~~~~~~~~~~DvIIVGsG~aG~~~A~~La~---g~~VlvLE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (570)
+.+........++|||+|.+..+++..... +.+|++|-.-+..+
T Consensus 170 P~~~~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP--------------------------------- 216 (659)
T KOG1346|consen 170 PSSEDLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP--------------------------------- 216 (659)
T ss_pred CccccCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------------------------------
Q ss_pred cccCCceeccccccCceeeeCCChh---hhhhCCCChhhhhhhhHHHHhhccCCCCCcchHHHHHHHHHHcCCCCCCCCC
Q 008331 110 YNARARVLGGGSVINAGFYTRASLR---YVREVGWTESLVNSSYEWVEKKVAHEPPMLQWQSAVRDGLLEAGVLPYNGFT 186 (570)
Q Consensus 110 ~~~~g~~lGG~s~~~~~~~~r~~~~---~~~~~gw~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 186 (570)
|.|+.-. | |..+ .....++.+.++++-.
T Consensus 217 ------------------YmRPPLSKELW-----~~~d--------------------------pn~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 217 ------------------YMRPPLSKELW-----WYGD--------------------------PNSAKKLRFKQWSGKE 247 (659)
T ss_pred ------------------ccCCCcchhce-----ecCC--------------------------CChhhheeecccCCcc
Q ss_pred cCCCCcceeeeeEECCCCccccHHHhhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCC
Q 008331 187 FDHIYGTKVSGTIFDEDGHRHSAADLLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGK 266 (570)
Q Consensus 187 ~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa 266 (570)
.+ -++.+++...+... |+.+...|+-++.+-+|++|...+. -|... ||.....
T Consensus 248 Rs---------iffepd~FfvspeD-Lp~~~nGGvAvl~G~kvvkid~~d~--------~V~Ln--DG~~I~Y------- 300 (659)
T KOG1346|consen 248 RS---------IFFEPDGFFVSPED-LPKAVNGGVAVLRGRKVVKIDEEDK--------KVILN--DGTTIGY------- 300 (659)
T ss_pred ce---------eEecCCcceeChhH-CcccccCceEEEeccceEEeecccC--------eEEec--CCcEeeh-------
Q ss_pred ceEEEcCCccccHHHHH
Q 008331 267 NEIILSAGAIGSPQLLM 283 (570)
Q Consensus 267 ~~VVLaaGa~~tp~LLl 283 (570)
+...+|+| .+|+-|.
T Consensus 301 dkcLIATG--~~Pk~l~ 315 (659)
T KOG1346|consen 301 DKCLIATG--VRPKKLQ 315 (659)
T ss_pred hheeeecC--cCcccch
No 457
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=65.18 E-value=14 Score=39.72 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=42.6
Q ss_pred hcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEe---c-------CCceEEEEecCCCCceEEEcCCcccc-HHHHH
Q 008331 215 YADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYD---H-------VGARHRACLNNGGKNEIILSAGAIGS-PQLLM 283 (570)
Q Consensus 215 ~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~---~-------~G~~~~v~~~~~aa~~VVLaaGa~~t-p~LLl 283 (570)
.+.+.|+++++++.+++|.-+++ ++++|++.. . .|+...+ .++.||+|.|..-. ..|+.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhcc
Confidence 44567999999999999975444 899888652 1 2444555 47999999995433 34554
Q ss_pred HhC
Q 008331 284 LSG 286 (570)
Q Consensus 284 ~SG 286 (570)
..|
T Consensus 408 ~~g 410 (471)
T PRK12810 408 QFG 410 (471)
T ss_pred ccC
Confidence 444
No 458
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.15 E-value=6.1 Score=37.45 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=26.7
Q ss_pred EEEEC-CCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVG-GGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVG-sG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+.||| +|..|.++|..|++ |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987654
No 459
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=65.14 E-value=8.2 Score=35.99 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=29.1
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGS 74 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~ 74 (570)
+.-|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 3569999999999999999999 94 6999986643
No 460
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.76 E-value=7.3 Score=39.09 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=28.0
Q ss_pred EEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~ 75 (570)
|+|||+|.-|+-+|..|+. | .++.|++.....
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 7999999999999999999 8 579999876543
No 461
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=64.61 E-value=8.1 Score=36.78 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=30.8
Q ss_pred ccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPYE 77 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~~ 77 (570)
.-|+|||-|-.|+.++..|++ | -++.+++.-..--.
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT 68 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT 68 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc
Confidence 459999999999999999999 8 58999998765443
No 462
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=64.61 E-value=5.7 Score=42.73 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=28.9
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.-.|+|+|+|.+|+.++..+.. |.+|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4469999999999999988888 99999998764
No 463
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=64.39 E-value=6.1 Score=39.48 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=29.0
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-.++|||.|.+|..+|..|.. |.+|.+.++-+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 469999999999999999999 99999998763
No 464
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.06 E-value=6.8 Score=39.38 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=27.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.+.|||+|..|..+|..|++ |.+|.+..+.
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 48999999999999999999 9999998875
No 465
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=63.95 E-value=6.4 Score=42.05 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=27.4
Q ss_pred cEEEECCCCchhHHHHhhhc-c--CeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N--ATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g--~~VlvLE~G~ 73 (570)
.+.|||+|..|+++|..||+ | .+|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 38999999999999999998 5 7899998654
No 466
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=63.68 E-value=7 Score=36.44 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=28.1
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
..-|+|||+|.-|+.+|..|+. |. ++.+++-..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3459999999999999999999 95 688888554
No 467
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=63.65 E-value=8 Score=38.36 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=27.5
Q ss_pred EEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP 75 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~ 75 (570)
|+|||+|.-|+-++..|+. | .++.|++-....
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID 35 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 7999999999999999999 8 478888866543
No 468
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=63.35 E-value=8.2 Score=30.39 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=26.0
Q ss_pred cEEEECCCCchhHHHHhhhc-c-CeEEEEcc
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-N-ATVLLLEK 71 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~ 71 (570)
.++|+|+|..|..+|..|.+ + .+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 59999999999999999998 4 67888887
No 469
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=63.31 E-value=7.7 Score=42.61 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.0
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
+-.+||+|.|.-|-.+|.+|.+ |.+|+++|+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 3578999999999999999999 99999999764
No 470
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.57 E-value=18 Score=37.33 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=41.5
Q ss_pred CCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEec-CCceEEEEecCCCCceEEEcCCcc-ccHHHH
Q 008331 217 DPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDH-VGARHRACLNNGGKNEIILSAGAI-GSPQLL 282 (570)
Q Consensus 217 ~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~-~G~~~~v~~~~~aa~~VVLaaGa~-~tp~LL 282 (570)
.++++.++.+++|+.+.-+++| + .-+.++.. .|+..++. .+.||||+|.= ..|.+|
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~g----~-~~l~~~~~~~~~~~t~~-----~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGDG----R-YRLTLRHHETGELETVE-----TDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCCCeeeccccceeeeecCCCc----e-EEEEEeeccCCCceEEE-----eeEEEEecccccCCchhh
Confidence 3678999999999999988774 5 44555543 46666664 69999999975 455454
No 471
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=62.49 E-value=7.1 Score=41.36 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=28.7
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-++|||.|..|..+|.+|.. |.+|++.|+.+
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999 99999998764
No 472
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=62.40 E-value=7.4 Score=38.54 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=27.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
-++|+|+|.++-++|+.|++ |. +|.|+.|..
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 58999999999999999999 85 788987753
No 473
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=62.29 E-value=6.3 Score=39.45 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=26.5
Q ss_pred EEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
+.|||+|..|..+|..|+. ++ .|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 4799999999999999997 76 999999864
No 474
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=62.23 E-value=7.4 Score=38.26 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=27.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|+|+|.+|..+|..|++ |.+|.++.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 58999999999999999999 99999997753
No 475
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=62.08 E-value=8 Score=38.59 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=27.7
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|-|||+|.-|.-.|..+|. |++|++.|...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 7899999999999999999 89999999763
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=62.04 E-value=6.7 Score=41.72 Aligned_cols=31 Identities=39% Similarity=0.587 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.++|||+|..|..+|..|.+ |..|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 48999999999999999999 99999999864
No 477
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.92 E-value=7.2 Score=44.17 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=28.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-|.|||+|..|.-+|..+|. |++|.++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 38899999999999999999 99999999764
No 478
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=61.88 E-value=10 Score=35.61 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=29.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
.--|-|||+|.-|+-+|.-.|. |+.|.+.++..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 3468999999999999999999 99999999764
No 479
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=61.84 E-value=7.4 Score=40.34 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.8
Q ss_pred cccEEEECCCCchhHHHHhhhc-cC-eEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~~ 75 (570)
..-|+|||+|..|+.+|..|+. |. ++.+++.....
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~ 171 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVD 171 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 4569999999999999999999 85 79999876543
No 480
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=61.40 E-value=7.5 Score=37.20 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=27.9
Q ss_pred ccEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
.-|+|||.|..|+.+|..|+. |. ++.+++...
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 459999999999999999999 84 788888554
No 481
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=61.30 E-value=18 Score=35.49 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=35.8
Q ss_pred hhhhcCCCCeEEEecceEEEEEecCCCCCCCeEEEEEEEecCCceEEEEecCCCCceEEEcCCcc
Q 008331 212 LLEYADPEKLTVYLRAVVQRIKFTETGRAKPTAHCVTFYDHVGARHRACLNNGGKNEIILSAGAI 276 (570)
Q Consensus 212 ~l~~~~~~g~~i~~~~~V~~i~~~~~~~~~~~v~GV~~~~~~G~~~~v~~~~~aa~~VVLaaGa~ 276 (570)
++..+.+.|++++.+++|+++..+++ ++ .|.+. ++. .++ .++.||+|+|..
T Consensus 97 l~~~~~~~gv~~~~~~~v~~~~~~~~-----~~-~~~~~--~~~-~~~-----~a~~vv~a~G~~ 147 (295)
T TIGR02032 97 LAERAQEAGAELRLGTTVLDVEIHDD-----RV-VVIVR--GGE-GTV-----TAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHcCCEEEeCcEEeeEEEeCC-----EE-EEEEc--Ccc-EEE-----EeCEEEECCCcc
Confidence 45556678999999999999988776 33 23333 222 234 379999999974
No 482
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=61.18 E-value=8.5 Score=38.93 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.0
Q ss_pred cEEEECCCCchhHHHHhhhc-cC-eEEEEccCCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGGS 74 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~~ 74 (570)
-+.|||+|..|..+|..++. |+ +|+|+|..+.
T Consensus 8 KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 8 KISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 48999999999999999998 85 8999997653
No 483
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=61.10 E-value=7 Score=42.17 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=28.2
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
|-|||+|.-|...|..|+. |++|.|.|+.+
T Consensus 8 V~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8899999999999999999 99999999774
No 484
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=61.04 E-value=7.5 Score=38.24 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=27.5
Q ss_pred cEEEECCCCchhHHHHhhhc-cC-eEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G~ 73 (570)
.++|+|+|.++-++++.|++ |. +|.|+.|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 69999999999999999998 85 699998764
No 485
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.89 E-value=8.7 Score=39.47 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=30.2
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~ 76 (570)
+.-|+|||.|..|+.+|..|+. | .++.+++......
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~ 65 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDL 65 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcc
Confidence 4569999999999999999999 8 4799998765433
No 486
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=60.84 E-value=7.6 Score=43.91 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=28.6
Q ss_pred cEEEECCCCchhHHHHhhhc-cCeEEEEccCC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
-|.|||+|..|.-.|..++. |+.|.++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 48999999999999999999 99999999764
No 487
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=60.51 E-value=4.6 Score=41.62 Aligned_cols=30 Identities=37% Similarity=0.763 Sum_probs=0.0
Q ss_pred EEEECCCCchhHHHHhhhc----cC-----------eEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ----NA-----------TVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~----g~-----------~VlvLE~G~ 73 (570)
+||||+|+.|.-.|.+|++ .+ +|.++|+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
No 488
>PRK06223 malate dehydrogenase; Reviewed
Probab=60.02 E-value=8.6 Score=38.57 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.8
Q ss_pred cEEEECCCCchhHHHHhhhc-cC-eEEEEccC
Q 008331 43 DYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKG 72 (570)
Q Consensus 43 DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G 72 (570)
-+.|||+|..|..+|..++. |. .|.++|.-
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 48999999999999999998 65 89999974
No 489
>PRK08017 oxidoreductase; Provisional
Probab=59.99 E-value=9.1 Score=36.84 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=27.0
Q ss_pred EEEECC-CCchhHHHHhhhc-cCeEEEEccCC
Q 008331 44 YIIVGG-GTSGCPLAATLSQ-NATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGs-G~aG~~~A~~La~-g~~VlvLE~G~ 73 (570)
++|.|+ |..|..+|..|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999999 99999987753
No 490
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=59.60 E-value=8.3 Score=39.82 Aligned_cols=35 Identities=23% Similarity=0.547 Sum_probs=30.1
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSP 75 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~ 75 (570)
..-|+|||+|..|+.+|..|+. | .++.+++.....
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve 77 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVD 77 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEc
Confidence 4569999999999999999999 8 589999876543
No 491
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=59.54 E-value=7.8 Score=38.31 Aligned_cols=29 Identities=31% Similarity=0.289 Sum_probs=26.9
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
|.|||.|..|...|..|++ |.+|.+.++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 7899999999999999999 9999999865
No 492
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=59.25 E-value=8.8 Score=38.01 Aligned_cols=31 Identities=10% Similarity=0.387 Sum_probs=27.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-cC-eEEEEccC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NA-TVLLLEKG 72 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~-~VlvLE~G 72 (570)
..++|||+|-+|-++|+.|++ |. +|.|+.|.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999 85 69998765
No 493
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=59.11 E-value=9.1 Score=36.33 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.4
Q ss_pred ccEEEECCCCchhHHHHhhhc-cCeEEEEc
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NATVLLLE 70 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~~VlvLE 70 (570)
--++|||+|..+.-=+..|.+ |.+|.|+=
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 359999999999888888888 99999984
No 494
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=58.96 E-value=9.2 Score=38.56 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=27.4
Q ss_pred ccEEEECCCCchhHHHHhhhc-cC--eEEEEccC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-NA--TVLLLEKG 72 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g~--~VlvLE~G 72 (570)
.-+.|||+|..|..+|+.|+. +. .++|++..
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 369999999999999999998 75 69999974
No 495
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=58.90 E-value=10 Score=35.12 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=26.7
Q ss_pred cEEEECC-CCchhHHHHhhhc-cCeEEEEccC
Q 008331 43 DYIIVGG-GTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 43 DvIIVGs-G~aG~~~A~~La~-g~~VlvLE~G 72 (570)
.++|+|+ |..|..+|..|++ |.+|.++.|.
T Consensus 30 ~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 30 TAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5899996 9999999999999 9999998765
No 496
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=58.73 E-value=8.5 Score=38.02 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=28.2
Q ss_pred ccEEEECCCCchhHHHHhhhc-c-CeEEEEccCC
Q 008331 42 YDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGG 73 (570)
Q Consensus 42 ~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~ 73 (570)
-.++|+|+|.+|..+|..|++ | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 358999999999999999999 8 7899998764
No 497
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=58.32 E-value=9.4 Score=39.75 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=26.8
Q ss_pred EEEECCCCchhHHHHhhhccCeEEEEccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQNATVLLLEKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~g~~VlvLE~G~ 73 (570)
|.|||.|..|+.+|..+|.|.+|+++|+..
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~ 32 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCH
Confidence 789999999999997777799999999875
No 498
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=58.31 E-value=8.2 Score=30.88 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.1
Q ss_pred EEEECCCCchhHHHHhhhc-c---CeEEEE-ccCC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-N---ATVLLL-EKGG 73 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g---~~VlvL-E~G~ 73 (570)
+.|||+|.-|.+++..|.+ | .+|.+. ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 5789999999999999999 8 889966 7664
No 499
>PRK07411 hypothetical protein; Validated
Probab=58.24 E-value=11 Score=39.26 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=30.4
Q ss_pred cccEEEECCCCchhHHHHhhhc-c-CeEEEEccCCCCC
Q 008331 41 YYDYIIVGGGTSGCPLAATLSQ-N-ATVLLLEKGGSPY 76 (570)
Q Consensus 41 ~~DvIIVGsG~aG~~~A~~La~-g-~~VlvLE~G~~~~ 76 (570)
..-|+|||+|.-|+.+|..|+. | .++.+++......
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~ 75 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDS 75 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecc
Confidence 4579999999999999999999 8 5788888765443
No 500
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=58.13 E-value=9.8 Score=35.50 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=25.8
Q ss_pred EEEECCCCchhHHHHhhhc-cCeEEEEccC
Q 008331 44 YIIVGGGTSGCPLAATLSQ-NATVLLLEKG 72 (570)
Q Consensus 44 vIIVGsG~aG~~~A~~La~-g~~VlvLE~G 72 (570)
+.|+|.|..|..+|.+++. |..|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 6899999999999999999 9999996433
Done!