Query 008333
Match_columns 570
No_of_seqs 342 out of 1320
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 22:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01363 FYVE: FYVE zinc finge 99.7 1.4E-18 3E-23 142.2 3.3 66 420-485 1-68 (69)
2 smart00064 FYVE Protein presen 99.7 4E-17 8.7E-22 133.2 3.7 66 420-485 2-67 (68)
3 KOG1729 FYVE finger containing 99.5 1.4E-15 3E-20 156.5 1.3 71 415-486 155-226 (288)
4 KOG1818 Membrane trafficking a 99.5 9E-15 1.9E-19 162.1 6.1 68 417-487 157-224 (634)
5 PTZ00303 phosphatidylinositol 99.4 4.8E-14 1E-18 156.5 3.7 68 418-485 449-530 (1374)
6 KOG1842 FYVE finger-containing 99.4 3.2E-14 6.9E-19 151.0 -0.4 88 419-506 171-281 (505)
7 cd00065 FYVE FYVE domain; Zinc 99.4 1.7E-13 3.7E-18 107.9 2.6 55 428-482 2-56 (57)
8 KOG1819 FYVE finger-containing 99.4 1.6E-13 3.5E-18 147.0 1.2 64 419-482 892-960 (990)
9 KOG0509 Ankyrin repeat and DHH 99.1 1.1E-11 2.3E-16 136.9 0.8 79 229-328 77-156 (600)
10 KOG1841 Smad anchor for recept 99.1 3.7E-11 8E-16 138.4 1.4 62 418-480 547-608 (1287)
11 KOG4412 26S proteasome regulat 99.0 1.8E-10 3.8E-15 111.6 2.8 69 258-327 80-149 (226)
12 PF13857 Ank_5: Ankyrin repeat 99.0 5.1E-11 1.1E-15 93.8 -2.1 55 269-324 1-56 (56)
13 PHA02859 ankyrin repeat protei 98.9 2.6E-10 5.7E-15 111.7 -1.6 61 263-324 66-130 (209)
14 KOG0509 Ankyrin repeat and DHH 98.8 9.4E-10 2E-14 121.8 1.4 108 218-327 101-222 (600)
15 KOG0195 Integrin-linked kinase 98.8 1.4E-09 3E-14 111.5 1.6 79 228-327 32-110 (448)
16 KOG4412 26S proteasome regulat 98.8 3.2E-09 7E-14 103.0 3.2 71 257-328 45-117 (226)
17 KOG0508 Ankyrin repeat protein 98.8 3.7E-09 8.1E-14 113.9 3.4 64 261-325 128-191 (615)
18 PHA02743 Viral ankyrin protein 98.8 1E-09 2.2E-14 103.8 -0.8 82 228-327 55-138 (166)
19 PHA02878 ankyrin repeat protei 98.7 1.6E-09 3.4E-14 117.7 -0.4 76 230-326 168-243 (477)
20 PHA02736 Viral ankyrin protein 98.7 1.8E-09 4E-14 99.7 -0.3 64 263-327 71-136 (154)
21 PF12796 Ank_2: Ankyrin repeat 98.7 1.7E-09 3.7E-14 90.5 -1.3 60 263-327 10-69 (89)
22 PHA02791 ankyrin-like protein; 98.7 2.6E-09 5.5E-14 110.3 -0.7 66 261-327 72-138 (284)
23 KOG0510 Ankyrin repeat protein 98.7 3.5E-09 7.6E-14 119.8 0.3 105 228-332 271-392 (929)
24 KOG4177 Ankyrin [Cell wall/mem 98.7 4E-09 8.6E-14 124.5 0.7 70 257-327 547-616 (1143)
25 KOG0512 Fetal globin-inducing 98.7 4.6E-09 1E-13 101.4 0.9 79 228-327 95-173 (228)
26 PHA02884 ankyrin repeat protei 98.7 3.4E-09 7.5E-14 110.4 -0.6 77 229-326 69-146 (300)
27 PHA02741 hypothetical protein; 98.7 3.3E-09 7.1E-14 100.2 -0.8 64 263-327 77-142 (169)
28 PHA02791 ankyrin-like protein; 98.7 3.6E-09 7.9E-14 109.2 -0.7 78 228-328 28-105 (284)
29 PHA02875 ankyrin repeat protei 98.7 3.7E-09 8E-14 112.0 -0.7 68 260-328 112-179 (413)
30 PHA02859 ankyrin repeat protei 98.7 3.9E-09 8.4E-14 103.5 -0.5 80 228-325 85-166 (209)
31 PHA02795 ankyrin-like protein; 98.6 4.7E-09 1E-13 114.2 -0.4 69 259-328 197-265 (437)
32 PHA02989 ankyrin repeat protei 98.6 5.4E-09 1.2E-13 114.3 0.1 84 227-325 66-153 (494)
33 PHA03095 ankyrin-like protein; 98.6 7.4E-09 1.6E-13 110.9 0.3 65 263-328 237-301 (471)
34 PF12796 Ank_2: Ankyrin repeat 98.6 4.6E-09 1E-13 87.9 -1.7 57 257-314 33-89 (89)
35 PHA02741 hypothetical protein; 98.6 6.1E-09 1.3E-13 98.4 -1.4 79 229-328 20-109 (169)
36 PHA02874 ankyrin repeat protei 98.6 9.8E-09 2.1E-13 110.1 -0.6 80 228-328 122-201 (434)
37 PHA03095 ankyrin-like protein; 98.6 1.1E-08 2.3E-13 109.7 -0.4 79 229-325 46-125 (471)
38 PHA02946 ankyin-like protein; 98.6 1.3E-08 2.8E-13 110.8 0.2 64 261-325 50-113 (446)
39 PHA02716 CPXV016; CPX019; EVM0 98.5 1.6E-08 3.4E-13 116.6 -0.1 64 261-325 190-255 (764)
40 PHA02874 ankyrin repeat protei 98.5 1.4E-08 3.1E-13 108.8 -0.7 80 228-328 155-234 (434)
41 PHA02798 ankyrin-like protein; 98.5 1.8E-08 3.8E-13 110.1 -0.3 84 226-327 67-155 (489)
42 KOG0508 Ankyrin repeat protein 98.5 2.4E-08 5.2E-13 107.9 0.6 99 228-328 115-226 (615)
43 KOG4424 Predicted Rho/Rac guan 98.5 1.3E-08 2.9E-13 111.8 -1.6 63 419-484 408-471 (623)
44 PLN03192 Voltage-dependent pot 98.5 2E-08 4.3E-13 116.9 -0.5 68 260-328 568-666 (823)
45 KOG1409 Uncharacterized conser 98.5 3.1E-08 6.8E-13 103.6 0.8 71 413-486 270-351 (404)
46 PHA02875 ankyrin repeat protei 98.5 2.9E-08 6.2E-13 105.3 0.2 97 230-327 102-212 (413)
47 PHA02798 ankyrin-like protein; 98.5 1.7E-08 3.8E-13 110.2 -1.7 82 228-327 107-192 (489)
48 PHA02730 ankyrin-like protein; 98.5 2.6E-08 5.6E-13 113.2 -0.6 82 228-326 39-123 (672)
49 PF13637 Ank_4: Ankyrin repeat 98.5 1.4E-08 3.1E-13 78.7 -1.9 54 230-303 1-54 (54)
50 PHA02878 ankyrin repeat protei 98.5 2.8E-08 6E-13 108.1 -0.5 76 228-324 199-276 (477)
51 PHA02946 ankyin-like protein; 98.5 2.6E-08 5.5E-13 108.6 -0.8 63 262-326 187-251 (446)
52 PHA03100 ankyrin repeat protei 98.4 3.4E-08 7.5E-13 106.2 -0.1 67 260-327 118-186 (480)
53 PHA02917 ankyrin-like protein; 98.4 4.4E-08 9.5E-13 111.8 0.1 99 226-326 392-494 (661)
54 PHA02884 ankyrin repeat protei 98.4 3.8E-08 8.2E-13 102.6 -0.5 70 258-328 41-115 (300)
55 KOG0502 Integral membrane anky 98.4 8.3E-08 1.8E-12 95.7 1.1 73 259-332 169-241 (296)
56 PHA02989 ankyrin repeat protei 98.4 3.9E-08 8.4E-13 107.6 -1.4 82 229-328 107-192 (494)
57 PHA02876 ankyrin repeat protei 98.4 6.8E-08 1.5E-12 109.6 -0.1 65 261-326 420-485 (682)
58 PTZ00322 6-phosphofructo-2-kin 98.3 8E-08 1.7E-12 109.7 -0.4 71 257-328 89-159 (664)
59 PLN03192 Voltage-dependent pot 98.3 8E-08 1.7E-12 111.9 -0.6 70 257-327 532-601 (823)
60 PHA03100 ankyrin repeat protei 98.3 1.4E-07 3E-12 101.6 1.0 71 257-328 80-152 (480)
61 PHA02792 ankyrin-like protein; 98.3 7.7E-08 1.7E-12 108.7 -1.0 63 263-326 390-452 (631)
62 PHA02876 ankyrin repeat protei 98.3 9.2E-08 2E-12 108.5 -0.6 100 227-327 304-418 (682)
63 PHA02743 Viral ankyrin protein 98.3 1.5E-07 3.3E-12 89.0 0.9 69 228-317 92-161 (166)
64 TIGR00870 trp transient-recept 98.3 4.9E-08 1.1E-12 112.0 -3.3 79 229-328 127-219 (743)
65 PHA02716 CPXV016; CPX019; EVM0 98.3 1.2E-07 2.7E-12 109.3 -0.1 62 261-323 330-405 (764)
66 COG0666 Arp FOG: Ankyrin repea 98.3 2.1E-07 4.5E-12 86.3 1.3 93 220-328 96-191 (235)
67 KOG0514 Ankyrin repeat protein 98.3 1.6E-07 3.4E-12 99.1 0.1 67 257-324 347-414 (452)
68 KOG1843 Uncharacterized conser 98.3 1.6E-07 3.5E-12 99.9 0.0 67 418-484 150-218 (473)
69 KOG0510 Ankyrin repeat protein 98.3 2.5E-07 5.3E-12 105.2 1.2 64 263-327 101-164 (929)
70 KOG0505 Myosin phosphatase, re 98.3 2.5E-07 5.4E-12 101.2 1.2 80 228-328 71-150 (527)
71 PHA02736 Viral ankyrin protein 98.3 1.8E-07 3.9E-12 86.4 0.1 50 259-308 101-151 (154)
72 KOG4214 Myotrophin and similar 98.3 1.2E-07 2.6E-12 83.6 -1.2 74 222-320 30-103 (117)
73 KOG0505 Myosin phosphatase, re 98.2 2.8E-07 6E-12 100.9 0.3 77 230-327 198-274 (527)
74 PHA02917 ankyrin-like protein; 98.2 2.6E-07 5.5E-12 105.6 -0.6 69 259-328 147-240 (661)
75 PF13857 Ank_5: Ankyrin repeat 98.2 1.2E-07 2.6E-12 74.6 -2.6 44 227-290 13-56 (56)
76 KOG0502 Integral membrane anky 98.2 7.4E-07 1.6E-11 89.0 2.3 96 228-324 158-266 (296)
77 PHA02795 ankyrin-like protein; 98.1 3.8E-07 8.2E-12 99.5 -1.2 68 228-316 219-294 (437)
78 KOG0515 p53-interacting protei 98.1 9.1E-07 2E-11 96.8 1.6 67 222-308 575-641 (752)
79 KOG1710 MYND Zn-finger and ank 98.1 4.1E-07 8.8E-12 93.7 -1.4 77 229-326 44-121 (396)
80 KOG0512 Fetal globin-inducing 98.1 7.8E-07 1.7E-11 86.2 -0.1 82 263-352 76-158 (228)
81 KOG0230 Phosphatidylinositol-4 98.0 2.8E-06 6E-11 101.7 3.5 51 427-488 4-54 (1598)
82 PHA02730 ankyrin-like protein; 98.0 1.3E-06 2.8E-11 99.7 -0.3 62 264-326 443-505 (672)
83 PTZ00322 6-phosphofructo-2-kin 98.0 2E-06 4.3E-11 98.4 0.6 73 228-321 113-192 (664)
84 COG0666 Arp FOG: Ankyrin repea 98.0 1.5E-06 3.2E-11 80.7 -0.5 68 261-328 84-158 (235)
85 KOG1811 Predicted Zn2+-binding 97.9 8.1E-07 1.8E-11 98.4 -2.7 65 419-483 313-382 (1141)
86 KOG4177 Ankyrin [Cell wall/mem 97.9 3E-06 6.5E-11 100.7 1.6 92 220-332 199-290 (1143)
87 cd00204 ANK ankyrin repeats; 97.9 1.5E-06 3.3E-11 73.6 -0.8 78 229-327 6-83 (126)
88 KOG0507 CASK-interacting adapt 97.9 5.4E-06 1.2E-10 94.0 1.8 70 257-327 89-158 (854)
89 KOG1729 FYVE finger containing 97.8 4.8E-06 1E-10 86.5 1.0 64 420-483 12-81 (288)
90 cd00204 ANK ankyrin repeats; 97.8 2.7E-06 6E-11 72.1 -0.7 79 228-327 38-116 (126)
91 KOG0514 Ankyrin repeat protein 97.8 5.9E-06 1.3E-10 87.5 1.5 53 275-328 331-384 (452)
92 KOG0195 Integrin-linked kinase 97.8 5.8E-06 1.3E-10 85.4 0.6 66 258-324 75-140 (448)
93 KOG3676 Ca2+-permeable cation 97.8 3.6E-06 7.9E-11 96.0 -1.1 66 262-328 196-284 (782)
94 KOG0507 CASK-interacting adapt 97.7 1.9E-05 4.1E-10 89.7 2.5 70 257-327 56-125 (854)
95 PF00023 Ank: Ankyrin repeat H 97.7 1E-05 2.2E-10 57.0 -0.0 32 282-314 1-32 (33)
96 PHA02792 ankyrin-like protein; 97.6 3.8E-05 8.2E-10 87.3 4.2 51 258-308 80-131 (631)
97 PF13606 Ank_3: Ankyrin repeat 97.6 1.3E-05 2.8E-10 56.1 -0.4 29 282-311 1-29 (30)
98 PF13637 Ank_4: Ankyrin repeat 97.6 7.3E-06 1.6E-10 63.5 -2.1 45 283-328 1-45 (54)
99 TIGR00870 trp transient-recept 97.5 1.5E-05 3.2E-10 91.8 -2.1 80 229-328 174-268 (743)
100 KOG0260 RNA polymerase II, lar 97.4 0.0028 6.1E-08 75.2 15.4 8 29-36 1446-1453(1605)
101 KOG0783 Uncharacterized conser 97.3 0.00011 2.3E-09 84.4 2.8 81 238-326 47-128 (1267)
102 KOG0515 p53-interacting protei 97.3 7.4E-05 1.6E-09 82.2 1.1 72 257-329 557-628 (752)
103 PF00023 Ank: Ankyrin repeat H 97.2 6.7E-05 1.4E-09 52.8 -0.2 33 229-281 1-33 (33)
104 KOG0522 Ankyrin repeat protein 97.2 9.6E-05 2.1E-09 81.4 0.4 76 232-327 22-98 (560)
105 KOG0521 Putative GTPase activa 97.2 0.00013 2.8E-09 85.1 1.2 103 222-325 623-730 (785)
106 KOG1924 RhoA GTPase effector D 97.1 0.0024 5.3E-08 73.2 10.8 43 262-308 715-757 (1102)
107 KOG1924 RhoA GTPase effector D 97.1 0.0024 5.2E-08 73.3 10.5 10 444-453 885-894 (1102)
108 KOG1842 FYVE finger-containing 97.1 0.00054 1.2E-08 74.3 4.5 37 526-570 159-195 (505)
109 KOG4369 RTK signaling protein 97.0 0.00028 6.2E-09 83.0 1.8 74 256-330 763-837 (2131)
110 PF13606 Ank_3: Ankyrin repeat 96.9 0.00022 4.7E-09 49.9 0.1 30 229-278 1-30 (30)
111 KOG4214 Myotrophin and similar 96.9 0.00022 4.8E-09 63.4 -0.1 74 257-332 9-82 (117)
112 KOG0818 GTPase-activating prot 96.8 0.00032 6.9E-09 76.9 0.3 70 256-326 139-209 (669)
113 KOG3676 Ca2+-permeable cation 96.5 0.00039 8.5E-09 79.9 -1.7 69 260-328 250-319 (782)
114 KOG0705 GTPase-activating prot 96.5 0.00059 1.3E-08 76.0 -0.5 69 257-326 631-703 (749)
115 PF02318 FYVE_2: FYVE-type zin 96.3 0.0037 8E-08 56.9 3.6 51 428-485 54-105 (118)
116 KOG0705 GTPase-activating prot 96.0 0.0027 5.9E-08 70.9 1.2 62 227-308 658-719 (749)
117 KOG0230 Phosphatidylinositol-4 95.9 0.0036 7.7E-08 76.1 2.0 34 423-458 92-125 (1598)
118 KOG3671 Actin regulatory prote 95.6 0.23 5E-06 55.2 14.1 9 12-20 316-324 (569)
119 KOG4369 RTK signaling protein 95.6 0.0076 1.7E-07 71.6 2.9 70 257-327 1001-1070(2131)
120 KOG0506 Glutaminase (contains 95.5 0.01 2.2E-07 65.3 3.2 67 257-324 513-580 (622)
121 KOG1710 MYND Zn-finger and ank 95.3 0.0037 8E-08 65.2 -0.6 79 261-339 23-103 (396)
122 KOG0818 GTPase-activating prot 95.1 0.007 1.5E-07 66.8 0.5 60 226-305 163-222 (669)
123 KOG0783 Uncharacterized conser 94.7 0.012 2.6E-07 68.2 1.2 50 276-326 45-95 (1267)
124 KOG3671 Actin regulatory prote 94.7 0.83 1.8E-05 51.0 15.0 7 12-18 298-304 (569)
125 KOG0511 Ankyrin repeat protein 94.7 0.0081 1.8E-07 64.6 -0.2 52 257-308 43-94 (516)
126 KOG0520 Uncharacterized conser 94.4 0.018 3.9E-07 68.1 1.7 61 259-319 616-677 (975)
127 KOG0782 Predicted diacylglycer 94.1 0.0078 1.7E-07 67.2 -2.0 67 257-324 906-974 (1004)
128 KOG2384 Major histocompatibili 93.6 0.015 3.3E-07 57.6 -0.8 51 273-324 2-53 (223)
129 KOG1841 Smad anchor for recept 92.8 0.048 1E-06 65.1 1.4 57 417-486 646-702 (1287)
130 KOG0522 Ankyrin repeat protein 92.4 0.034 7.4E-07 62.0 -0.3 53 231-303 56-108 (560)
131 smart00248 ANK ankyrin repeats 92.4 0.033 7.1E-07 34.6 -0.3 26 283-308 2-27 (30)
132 KOG0521 Putative GTPase activa 92.3 0.051 1.1E-06 64.0 0.9 60 270-330 641-702 (785)
133 KOG1830 Wiskott Aldrich syndro 91.6 6.3 0.00014 43.6 15.5 18 85-102 345-362 (518)
134 KOG2384 Major histocompatibili 89.6 0.11 2.4E-06 51.7 0.2 59 230-308 12-71 (223)
135 KOG0993 Rab5 GTPase effector R 88.5 0.017 3.7E-07 62.5 -6.8 65 420-486 460-526 (542)
136 KOG1818 Membrane trafficking a 88.3 0.2 4.3E-06 57.4 1.2 35 430-464 56-91 (634)
137 KOG2505 Ankyrin repeat protein 83.8 0.39 8.5E-06 53.6 0.5 62 263-325 404-471 (591)
138 smart00154 ZnF_AN1 AN1-like Zi 83.3 0.69 1.5E-05 34.6 1.5 27 431-459 1-27 (39)
139 TIGR00622 ssl1 transcription f 83.2 1.2 2.6E-05 40.9 3.3 54 420-481 47-110 (112)
140 KOG3576 Ovo and related transc 83.0 0.3 6.5E-06 49.1 -0.7 62 424-487 113-186 (267)
141 TIGR00599 rad18 DNA repair pro 82.4 0.48 1E-05 51.9 0.5 46 427-484 25-70 (397)
142 KOG0307 Vesicle coat complex C 81.4 44 0.00095 41.0 15.9 9 313-321 966-974 (1049)
143 KOG0520 Uncharacterized conser 79.8 0.94 2E-05 54.3 1.8 79 207-305 605-702 (975)
144 PF13717 zinc_ribbon_4: zinc-r 78.6 1.2 2.6E-05 32.7 1.4 25 430-454 4-35 (36)
145 PF07975 C1_4: TFIIH C1-like d 78.1 0.56 1.2E-05 37.3 -0.5 44 430-481 1-50 (51)
146 PRK00464 nrdR transcriptional 77.3 1.2 2.6E-05 42.9 1.4 25 430-454 2-38 (154)
147 PF01363 FYVE: FYVE zinc finge 76.9 1.1 2.4E-05 36.5 0.9 21 550-570 4-24 (69)
148 COG5432 RAD18 RING-finger-cont 75.6 0.61 1.3E-05 49.0 -1.2 30 428-462 25-55 (391)
149 PF13719 zinc_ribbon_5: zinc-r 74.8 1.8 3.9E-05 31.8 1.5 26 429-454 3-35 (37)
150 KOG1985 Vesicle coat complex C 72.7 39 0.00085 40.4 12.1 15 469-483 603-617 (887)
151 TIGR02300 FYDLN_acid conserved 72.6 2.2 4.9E-05 39.9 1.8 26 429-454 10-36 (129)
152 PF09538 FYDLN_acid: Protein o 71.8 2.5 5.4E-05 38.5 1.9 26 429-454 10-36 (108)
153 KOG0320 Predicted E3 ubiquitin 71.6 0.64 1.4E-05 45.8 -2.0 48 428-485 131-178 (187)
154 KOG3173 Predicted Zn-finger pr 71.6 1.9 4.1E-05 42.0 1.2 28 428-458 105-132 (167)
155 KOG1923 Rac1 GTPase effector F 71.4 18 0.00039 42.8 9.0 11 24-34 263-273 (830)
156 KOG0506 Glutaminase (contains 69.8 1.8 4E-05 48.3 0.7 50 257-306 546-596 (622)
157 PHA02768 hypothetical protein; 69.1 2 4.4E-05 34.7 0.6 25 430-454 7-41 (55)
158 KOG4275 Predicted E3 ubiquitin 68.6 0.79 1.7E-05 48.2 -2.2 49 426-483 42-90 (350)
159 TIGR03826 YvyF flagellar opero 66.8 2.5 5.5E-05 40.0 0.9 27 445-486 4-30 (137)
160 smart00064 FYVE Protein presen 65.5 3.8 8.3E-05 33.2 1.6 21 550-570 5-25 (68)
161 PF14634 zf-RING_5: zinc-RING 64.1 1.8 3.9E-05 32.5 -0.5 33 430-463 1-33 (44)
162 KOG0978 E3 ubiquitin ligase in 63.9 0.82 1.8E-05 53.2 -3.5 47 426-483 641-687 (698)
163 KOG4849 mRNA cleavage factor I 63.7 1.5E+02 0.0034 32.5 13.4 11 294-304 409-419 (498)
164 KOG2164 Predicted E3 ubiquitin 61.3 2.4 5.2E-05 47.6 -0.4 52 428-486 186-237 (513)
165 PF01485 IBR: IBR domain; Int 60.4 6.8 0.00015 30.7 2.2 33 428-460 18-56 (64)
166 PF12773 DZR: Double zinc ribb 59.3 6.3 0.00014 30.1 1.7 27 427-453 11-38 (50)
167 PRK03564 formate dehydrogenase 58.9 9.1 0.0002 40.9 3.4 59 428-486 187-264 (309)
168 KOG3609 Receptor-activated Ca2 57.7 4.8 0.0001 47.7 1.2 31 281-312 129-159 (822)
169 KOG0782 Predicted diacylglycer 57.5 1.2 2.6E-05 50.5 -3.4 64 262-325 867-942 (1004)
170 PF13639 zf-RING_2: Ring finge 56.7 3.2 7E-05 30.9 -0.3 34 429-463 1-34 (44)
171 TIGR00570 cdk7 CDK-activating 56.0 4.1 8.9E-05 43.4 0.2 33 429-463 4-39 (309)
172 PF01529 zf-DHHC: DHHC palmito 55.1 6.5 0.00014 37.0 1.4 26 427-454 47-72 (174)
173 KOG3799 Rab3 effector RIM1 and 54.5 10 0.00022 36.0 2.6 52 428-484 65-117 (169)
174 COG2126 RPL37A Ribosomal prote 54.1 6.1 0.00013 32.4 0.9 6 447-452 19-24 (61)
175 KOG3795 Uncharacterized conser 53.9 6.1 0.00013 39.1 1.1 24 437-460 8-34 (230)
176 KOG1985 Vesicle coat complex C 53.5 1.2E+02 0.0025 36.7 11.3 26 12-38 10-35 (887)
177 KOG3576 Ovo and related transc 53.4 2.2 4.7E-05 43.1 -2.1 55 427-481 144-219 (267)
178 PRK04136 rpl40e 50S ribosomal 52.5 8.2 0.00018 30.4 1.4 23 428-452 14-36 (48)
179 PF07282 OrfB_Zn_ribbon: Putat 51.7 9.8 0.00021 30.9 1.8 27 428-454 28-56 (69)
180 KOG1814 Predicted E3 ubiquitin 51.4 6.7 0.00015 43.2 1.0 41 420-461 361-403 (445)
181 KOG0317 Predicted E3 ubiquitin 51.3 4.8 0.0001 42.4 -0.1 44 428-484 239-283 (293)
182 KOG2932 E3 ubiquitin ligase in 51.0 7.7 0.00017 41.4 1.3 48 427-487 89-136 (389)
183 PRK00398 rpoP DNA-directed RNA 50.5 9.1 0.0002 29.1 1.3 25 430-454 5-31 (46)
184 PRK14559 putative protein seri 50.2 8.7 0.00019 44.9 1.7 31 427-461 14-50 (645)
185 KOG1311 DHHC-type Zn-finger pr 49.4 9.5 0.00021 39.7 1.7 33 420-454 103-137 (299)
186 PLN03208 E3 ubiquitin-protein 49.1 3.9 8.4E-05 40.9 -1.1 55 427-485 17-79 (193)
187 smart00647 IBR In Between Ring 48.0 14 0.00031 28.9 2.2 31 430-460 20-56 (64)
188 PF15135 UPF0515: Uncharacteri 47.3 12 0.00025 39.0 1.9 35 422-456 126-167 (278)
189 TIGR02098 MJ0042_CXXC MJ0042 f 47.1 11 0.00024 27.3 1.3 25 430-454 4-35 (38)
190 KOG1314 DHHC-type Zn-finger pr 46.5 6.6 0.00014 42.6 0.0 33 419-453 77-114 (414)
191 PF09947 DUF2180: Uncharacteri 45.9 6.7 0.00015 33.1 -0.0 54 430-484 2-66 (68)
192 PF06750 DiS_P_DiS: Bacterial 45.7 13 0.00028 32.7 1.7 25 428-452 33-66 (92)
193 KOG2391 Vacuolar sorting prote 45.5 41 0.00088 36.5 5.6 13 49-61 147-159 (365)
194 PF07191 zinc-ribbons_6: zinc- 44.2 11 0.00023 32.1 0.9 54 430-485 3-61 (70)
195 PRK00432 30S ribosomal protein 42.8 19 0.0004 28.4 2.0 27 428-454 20-47 (50)
196 PF13923 zf-C3HC4_2: Zinc fing 42.2 9 0.00019 27.9 0.2 29 431-462 1-29 (39)
197 TIGR01562 FdhE formate dehydro 41.6 25 0.00054 37.5 3.4 59 428-487 184-265 (305)
198 KOG4739 Uncharacterized protei 40.7 10 0.00022 38.9 0.4 41 430-482 5-45 (233)
199 cd00162 RING RING-finger (Real 40.1 8.9 0.00019 27.1 -0.2 30 430-462 1-30 (45)
200 PF13913 zf-C2HC_2: zinc-finge 40.0 14 0.00031 24.9 0.8 13 555-567 2-14 (25)
201 PF13445 zf-RING_UBOX: RING-ty 40.0 10 0.00022 29.0 0.1 30 431-461 1-30 (43)
202 PF07174 FAP: Fibronectin-atta 39.8 4E+02 0.0087 28.4 11.6 36 164-199 109-148 (297)
203 PRK04023 DNA polymerase II lar 39.8 20 0.00042 43.8 2.5 44 427-484 625-673 (1121)
204 COG4338 Uncharacterized protei 39.5 11 0.00025 29.8 0.4 12 555-566 12-23 (54)
205 KOG3896 Dynactin, subunit p62 39.4 9.9 0.00021 41.1 0.0 30 433-463 14-43 (449)
206 KOG0823 Predicted E3 ubiquitin 38.8 6.6 0.00014 40.2 -1.3 49 428-485 47-95 (230)
207 PF03604 DNA_RNApol_7kD: DNA d 38.8 19 0.00041 26.0 1.4 23 430-452 2-25 (32)
208 PF01286 XPA_N: XPA protein N- 38.4 18 0.00039 26.6 1.2 10 472-481 22-31 (34)
209 TIGR02605 CxxC_CxxC_SSSS putat 38.2 13 0.00028 28.7 0.5 23 430-452 7-34 (52)
210 KOG4672 Uncharacterized conser 37.9 2.2E+02 0.0048 31.9 9.8 8 263-270 428-435 (487)
211 KOG3836 HLH transcription fact 37.9 16 0.00034 42.2 1.3 60 258-318 404-463 (605)
212 COG5574 PEX10 RING-finger-cont 37.1 10 0.00022 39.6 -0.3 45 429-483 216-260 (271)
213 KOG1315 Predicted DHHC-type Zn 36.5 16 0.00035 39.0 1.1 27 424-452 105-131 (307)
214 PF03107 C1_2: C1 domain; Int 36.5 28 0.00062 24.3 2.0 28 430-458 2-29 (30)
215 PF10367 Vps39_2: Vacuolar sor 36.0 27 0.00058 30.1 2.2 31 428-460 78-108 (109)
216 PF01690 PLRV_ORF5: Potato lea 36.0 30 0.00064 38.9 3.0 22 205-226 119-140 (465)
217 KOG1356 Putative transcription 35.7 22 0.00049 42.4 2.1 43 419-463 218-262 (889)
218 KOG1829 Uncharacterized conser 35.4 35 0.00076 39.5 3.5 60 428-487 340-406 (580)
219 PF01428 zf-AN1: AN1-like Zinc 35.3 24 0.00052 26.6 1.5 23 434-459 6-28 (43)
220 PF08271 TF_Zn_Ribbon: TFIIB z 35.3 22 0.00048 26.7 1.3 25 430-454 2-29 (43)
221 TIGR00100 hypA hydrogenase nic 35.3 18 0.00039 33.0 1.0 25 428-452 70-94 (115)
222 KOG0917 Uncharacterized conser 35.3 2.5E+02 0.0055 29.9 9.3 29 23-53 169-197 (338)
223 PRK15319 AIDA autotransporter- 35.1 64 0.0014 42.0 5.9 12 233-244 1806-1817(2039)
224 KOG0129 Predicted RNA-binding 35.0 21 0.00046 40.4 1.7 43 416-462 446-492 (520)
225 COG1996 RPC10 DNA-directed RNA 35.0 18 0.00038 28.7 0.8 24 429-452 7-32 (49)
226 COG0675 Transposase and inacti 34.9 21 0.00047 36.2 1.6 24 428-454 309-332 (364)
227 COG5273 Uncharacterized protei 34.8 18 0.0004 38.4 1.2 25 427-453 108-132 (309)
228 PF01907 Ribosomal_L37e: Ribos 34.7 20 0.00043 29.1 1.1 7 447-453 18-24 (55)
229 PF04981 NMD3: NMD3 family ; 34.3 18 0.00039 36.8 0.9 32 453-484 14-45 (236)
230 KOG2375 Protein interacting wi 33.5 6.3E+02 0.014 30.5 13.2 26 106-131 609-634 (756)
231 PRK11595 DNA utilization prote 33.4 12 0.00026 37.7 -0.5 31 429-461 21-57 (227)
232 PF07776 zf-AD: Zinc-finger as 33.3 38 0.00082 26.6 2.5 18 471-488 42-59 (75)
233 smart00659 RPOLCX RNA polymera 33.2 23 0.00051 27.2 1.2 23 430-452 4-27 (44)
234 KOG0825 PHD Zn-finger protein 32.9 17 0.00036 43.2 0.5 30 529-564 210-239 (1134)
235 PF09332 Mcm10: Mcm10 replicat 32.6 16 0.00035 39.6 0.3 11 473-483 302-312 (344)
236 KOG3609 Receptor-activated Ca2 31.2 21 0.00045 42.6 0.9 53 256-308 31-87 (822)
237 PF01155 HypA: Hydrogenase exp 30.6 15 0.00033 33.2 -0.2 26 428-453 70-95 (113)
238 KOG0917 Uncharacterized conser 30.6 2.8E+02 0.006 29.7 8.7 14 30-43 187-200 (338)
239 smart00291 ZnF_ZZ Zinc-binding 30.4 29 0.00063 26.2 1.3 30 428-459 4-34 (44)
240 PF04216 FdhE: Protein involve 30.2 22 0.00047 37.2 0.7 56 429-484 173-248 (290)
241 TIGR01628 PABP-1234 polyadenyl 30.1 4.2E+02 0.0091 30.0 11.0 8 187-194 508-515 (562)
242 PF04423 Rad50_zn_hook: Rad50 29.9 19 0.0004 28.3 0.1 10 557-566 22-31 (54)
243 PF02945 Endonuclease_7: Recom 29.7 18 0.0004 31.3 0.1 26 428-453 22-50 (81)
244 PF09889 DUF2116: Uncharacteri 29.4 30 0.00064 28.4 1.2 30 444-489 3-33 (59)
245 KOG2462 C2H2-type Zn-finger pr 29.2 20 0.00043 37.8 0.3 56 428-485 187-254 (279)
246 PF03276 Gag_spuma: Spumavirus 29.1 2.3E+02 0.0049 32.8 8.4 34 281-317 341-378 (582)
247 PRK00420 hypothetical protein; 28.9 36 0.00077 31.4 1.8 25 429-453 24-49 (112)
248 KOG0153 Predicted RNA-binding 28.6 11 0.00024 40.8 -1.7 18 426-443 39-56 (377)
249 PRK00564 hypA hydrogenase nick 28.4 28 0.00061 31.9 1.1 25 428-452 71-96 (117)
250 smart00834 CxxC_CXXC_SSSS Puta 27.7 25 0.00055 25.4 0.5 12 430-441 7-18 (41)
251 PF11781 RRN7: RNA polymerase 27.6 35 0.00077 25.1 1.3 26 428-453 8-34 (36)
252 KOG2505 Ankyrin repeat protein 27.4 22 0.00047 40.4 0.2 38 257-294 437-474 (591)
253 PF05502 Dynactin_p62: Dynacti 27.2 30 0.00064 39.1 1.2 33 443-484 4-36 (483)
254 PF01927 Mut7-C: Mut7-C RNAse 27.0 41 0.00089 31.7 2.0 13 427-439 90-102 (147)
255 smart00661 RPOL9 RNA polymeras 26.8 46 0.001 25.3 1.9 10 444-453 20-29 (52)
256 COG1645 Uncharacterized Zn-fin 26.7 30 0.00065 32.7 1.0 14 445-458 29-50 (131)
257 COG5178 PRP8 U5 snRNP spliceos 26.7 50 0.0011 41.2 2.9 9 220-228 300-308 (2365)
258 KOG1812 Predicted E3 ubiquitin 26.7 28 0.0006 38.2 0.8 32 428-460 306-339 (384)
259 KOG4323 Polycomb-like PHD Zn-f 26.6 26 0.00057 39.4 0.7 54 429-482 169-223 (464)
260 PF10497 zf-4CXXC_R1: Zinc-fin 26.0 23 0.0005 32.0 0.1 54 428-483 7-70 (105)
261 PF10263 SprT-like: SprT-like 26.0 34 0.00074 31.8 1.2 27 428-454 123-153 (157)
262 PF14353 CpXC: CpXC protein 25.9 35 0.00076 31.1 1.2 20 497-516 99-118 (128)
263 PF14803 Nudix_N_2: Nudix N-te 25.7 60 0.0013 23.7 2.2 13 469-481 17-29 (34)
264 PF02591 DUF164: Putative zinc 25.6 35 0.00075 27.0 1.0 26 429-454 23-56 (56)
265 PF07503 zf-HYPF: HypF finger; 25.6 17 0.00038 26.7 -0.6 21 431-451 2-28 (35)
266 COG1997 RPL43A Ribosomal prote 25.2 44 0.00095 29.6 1.6 29 428-457 35-66 (89)
267 PRK12380 hydrogenase nickel in 24.9 34 0.00074 31.1 1.0 25 428-452 70-94 (113)
268 PF06128 Shigella_OspC: Shigel 24.7 35 0.00076 35.4 1.1 49 260-308 227-279 (284)
269 COG2607 Predicted ATPase (AAA+ 24.6 14 0.00031 38.6 -1.7 23 220-242 87-109 (287)
270 PF10571 UPF0547: Uncharacteri 24.5 52 0.0011 22.7 1.6 12 555-566 14-25 (26)
271 TIGR01031 rpmF_bact ribosomal 24.4 50 0.0011 26.6 1.7 31 419-452 15-47 (55)
272 cd02340 ZZ_NBR1_like Zinc fing 24.2 39 0.00084 25.7 1.0 30 430-461 2-32 (43)
273 PF00097 zf-C3HC4: Zinc finger 24.2 26 0.00057 25.3 0.1 30 431-463 1-30 (41)
274 smart00531 TFIIE Transcription 23.9 41 0.0009 31.7 1.4 27 428-454 99-133 (147)
275 PF14835 zf-RING_6: zf-RING of 23.6 46 0.00099 28.0 1.4 29 429-461 8-37 (65)
276 PRK12496 hypothetical protein; 23.5 43 0.00094 32.4 1.4 23 430-452 129-151 (164)
277 PRK03824 hypA hydrogenase nick 23.4 38 0.00081 31.8 1.0 14 428-441 70-83 (135)
278 PRK14873 primosome assembly pr 23.4 44 0.00095 39.3 1.7 32 430-461 394-431 (665)
279 PF00569 ZZ: Zinc finger, ZZ t 23.4 25 0.00055 26.9 -0.2 23 428-451 4-26 (46)
280 TIGR00595 priA primosomal prot 23.1 57 0.0012 36.9 2.5 34 430-463 224-264 (505)
281 PF09297 zf-NADH-PPase: NADH p 23.1 67 0.0014 22.6 2.0 24 454-481 5-28 (32)
282 cd02249 ZZ Zinc finger, ZZ typ 23.1 37 0.00081 25.8 0.7 30 430-461 2-32 (46)
283 COG0498 ThrC Threonine synthas 23.0 31 0.00067 38.3 0.4 27 428-454 5-31 (411)
284 COG1439 Predicted nucleic acid 22.7 38 0.00083 33.6 0.9 21 430-452 141-161 (177)
285 KOG2177 Predicted E3 ubiquitin 22.7 18 0.0004 35.1 -1.3 33 428-464 13-45 (386)
286 TIGR01384 TFS_arch transcripti 22.6 50 0.0011 29.1 1.5 9 557-565 92-100 (104)
287 PF15616 TerY-C: TerY-C metal 22.5 40 0.00087 31.9 0.9 25 428-457 77-101 (131)
288 cd02341 ZZ_ZZZ3 Zinc finger, Z 22.5 39 0.00085 26.5 0.7 30 430-460 2-34 (48)
289 PF13901 DUF4206: Domain of un 21.9 46 0.00099 33.2 1.3 42 446-487 2-48 (202)
290 PF10170 C6_DPF: Cysteine-rich 21.7 56 0.0012 29.5 1.6 33 444-486 49-83 (97)
291 PF03875 Statherin: Statherin; 21.7 84 0.0018 23.8 2.3 17 104-120 20-36 (42)
292 cd02342 ZZ_UBA_plant Zinc fing 21.2 44 0.00095 25.9 0.7 30 430-460 2-32 (43)
293 PF03154 Atrophin-1: Atrophin- 21.0 1.7E+03 0.037 27.9 16.4 6 539-544 760-765 (982)
294 PHA00732 hypothetical protein 20.8 68 0.0015 27.5 1.9 11 430-440 3-13 (79)
295 COG3791 Uncharacterized conser 20.5 44 0.00096 31.1 0.8 9 430-438 28-36 (133)
296 PLN02638 cellulose synthase A 20.2 63 0.0014 40.0 2.1 56 424-486 13-71 (1079)
297 PRK03681 hypA hydrogenase nick 20.2 48 0.001 30.2 1.0 25 428-452 70-95 (114)
298 PF03276 Gag_spuma: Spumavirus 20.2 4.7E+02 0.01 30.4 8.7 18 284-304 322-339 (582)
299 COG1198 PriA Primosomal protei 20.2 68 0.0015 38.3 2.4 33 429-461 445-484 (730)
300 PRK06260 threonine synthase; V 20.1 60 0.0013 35.4 1.8 25 429-453 4-28 (397)
301 PF08394 Arc_trans_TRASH: Arch 20.0 76 0.0016 23.8 1.8 36 447-487 1-36 (37)
302 KOG3875 Peroxisomal biogenesis 20.0 3.4E+02 0.0074 29.5 7.2 16 216-231 88-103 (362)
No 1
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.73 E-value=1.4e-18 Score=142.24 Aligned_cols=66 Identities=48% Similarity=1.177 Sum_probs=49.1
Q ss_pred CCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEec--cCCCCCceeeccccHHHHH
Q 008333 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALT--ADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp--~~~~~~pvRVC~~Cy~~l~ 485 (570)
++|++|+++..|+.|++.|++++||||||.||++||+.|+.+++.++ .....+++|||+.|+..++
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 47999999999999999999999999999999999999999999987 5566789999999998774
No 2
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.53 E-value=1.4e-15 Score=156.52 Aligned_cols=71 Identities=41% Similarity=1.025 Sum_probs=64.3
Q ss_pred CCCCCCCcccCCCCccccccCc-cccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 415 GNEEKDHWVPDEAVSKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 415 ~~~~~~~Wvpd~~~~~C~~C~~-~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
....+.+|+||.++++||.|++ .|+++.||||||+||+|||..|+.+++.|+.. ..+++|||+.||.++..
T Consensus 155 ~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~-~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 155 SNNSAAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNL-STKPIRVCDICFEELEK 226 (288)
T ss_pred CCCcCCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCccccccc-CCCCceecHHHHHHHhc
Confidence 3456789999999999999999 99999999999999999999999999888765 46899999999999875
No 4
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=9e-15 Score=162.09 Aligned_cols=68 Identities=40% Similarity=0.940 Sum_probs=62.3
Q ss_pred CCCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 417 ~~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
++.+.|++.. .|+.|.+.|++++||||||.||+|||..|+.+.+.|+..+..++||||+.||+.+...
T Consensus 157 ~~~pdW~D~~---~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~ 224 (634)
T KOG1818|consen 157 ETAPDWIDSE---ECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRA 224 (634)
T ss_pred cCCccccccc---ccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhc
Confidence 3568899854 8999999999999999999999999999999999999999999999999999987543
No 5
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.43 E-value=4.8e-14 Score=156.45 Aligned_cols=68 Identities=32% Similarity=0.770 Sum_probs=53.9
Q ss_pred CCCCcccCCC-CccccccCccccCc-----cccccccccCceeccCCCcceEEec-----cCCC---CCceeeccccHHH
Q 008333 418 EKDHWVPDEA-VSKCTACGTDFSAF-----VRKHHCRNCGDIFCDKCTHGRIALT-----ADAN---AQPVRVCDRCMAE 483 (570)
Q Consensus 418 ~~~~Wvpd~~-~~~C~~C~~~Fsl~-----~RKHHCR~CG~vfC~~CS~~~~~Lp-----~~~~---~~pvRVC~~Cy~~ 483 (570)
..+.|++|++ .+.|+.|++.|+.+ +||||||+||++||..||.++..++ ..+. ..+.|||+.||++
T Consensus 449 hAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq 528 (1374)
T PTZ00303 449 HNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKE 528 (1374)
T ss_pred cCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHH
Confidence 4689999998 48899999999754 6999999999999999999876432 2221 2356899999975
Q ss_pred HH
Q 008333 484 VT 485 (570)
Q Consensus 484 l~ 485 (570)
+.
T Consensus 529 ~E 530 (1374)
T PTZ00303 529 YE 530 (1374)
T ss_pred HH
Confidence 53
No 6
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=99.40 E-value=3.2e-14 Score=150.95 Aligned_cols=88 Identities=32% Similarity=0.703 Sum_probs=65.3
Q ss_pred CCCcccCCCCccccccCccccCccccccccccCceeccCCCcceE-----Eec-----------------cCCCCCceee
Q 008333 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI-----ALT-----------------ADANAQPVRV 476 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~-----~Lp-----------------~~~~~~pvRV 476 (570)
...|++|.++..|..|..+|++++||||||.||+|+|.+|+.+-- .|. -+....++|+
T Consensus 171 vVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRl 250 (505)
T KOG1842|consen 171 VVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRL 250 (505)
T ss_pred cccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhHH
Confidence 468999999999999999999999999999999999999987521 000 0111245799
Q ss_pred ccccHHHHHhhhhhhhhhcCCC-cccchHHH
Q 008333 477 CDRCMAEVTQRLSNAKEMANKP-ALQSHEDL 506 (570)
Q Consensus 477 C~~Cy~~l~~r~s~~~e~~sk~-~~q~~e~L 506 (570)
|..|...+..|.....+....+ +++.++.+
T Consensus 251 C~hCl~~L~~R~~~~d~r~~~p~ivq~Ye~m 281 (505)
T KOG1842|consen 251 CMHCLDNLFRRKLQQDEREPSPGIVQHYEHL 281 (505)
T ss_pred HHHHHHHHHHHHHhhhhccCCchHHHHHHHH
Confidence 9999998877655544433323 35666654
No 7
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.38 E-value=1.7e-13 Score=107.91 Aligned_cols=55 Identities=51% Similarity=1.159 Sum_probs=50.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~ 482 (570)
+..|+.|++.|+++.||||||.||++||..|+.+++.++.....+++|||..|+.
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 4689999999999999999999999999999999999887566799999999985
No 8
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.35 E-value=1.6e-13 Score=146.95 Aligned_cols=64 Identities=42% Similarity=1.039 Sum_probs=60.7
Q ss_pred CCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeecc-----ccHH
Q 008333 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCD-----RCMA 482 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~-----~Cy~ 482 (570)
.+-|++|+.+..||.|+..|++|+||||||+||.|||++|+...++|+..+..+.+|||+ .|+.
T Consensus 892 ppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~ 960 (990)
T KOG1819|consen 892 PPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLT 960 (990)
T ss_pred CcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCccccccee
Confidence 466999999999999999999999999999999999999999999999999899999999 8874
No 9
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.12 E-value=1.1e-11 Score=136.88 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=74.0
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
.|-+.|||||..+. .+|+|.||.+||+||..+ ..+.||||+|+++|+..+|++|+|+||
T Consensus 77 ~g~tlLHWAAiNNr--------------------l~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGA 136 (600)
T KOG0509|consen 77 EGVTLLHWAAINNR--------------------LDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGA 136 (600)
T ss_pred CCccceeHHHHcCc--------------------HHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCC
Confidence 67789999999987 999999999999999998 578999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
| +.+.|.+|.++||+|+.-.
T Consensus 137 d-pt~~D~~G~~~lHla~~~~ 156 (600)
T KOG0509|consen 137 D-PTLKDKQGLTPLHLAAQFG 156 (600)
T ss_pred C-CceecCCCCcHHHHHHHhC
Confidence 9 9999999999999996653
No 10
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=99.06 E-value=3.7e-11 Score=138.43 Aligned_cols=62 Identities=32% Similarity=0.770 Sum_probs=54.0
Q ss_pred CCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeecccc
Q 008333 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 480 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~C 480 (570)
..+.|++|.++..||.|..+|++++||||||+||+|||..|+..+..|... ....-|||..|
T Consensus 547 kqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl-~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 547 KQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYL-SESEGRVSNVD 608 (1287)
T ss_pred CCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhc-Ccccccccccc
Confidence 468999999999999999999999999999999999999999998877643 23445777777
No 11
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.8e-10 Score=111.64 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=61.7
Q ss_pred cCCCchhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 258 VGSGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~a-gA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+..|+.+||+.||-. |||+|+++..|+|+||+||-+|..+|+.+||++|+. +++.|..|.|+||.|.--
T Consensus 80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAav 149 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAV 149 (226)
T ss_pred hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhc
Confidence 344568999999987 999999999999999999999999999999999999 999999999999987443
No 12
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.95 E-value=5.1e-11 Score=93.82 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=33.4
Q ss_pred cccCC-cccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 269 VPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 269 Ll~ag-A~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
||++| +++|.+|..|.|+||+|++.|+.+++++|++.|+| +++.|.+|.|+||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence 78889 99999999999999999999999999999999999 999999999999985
No 13
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.85 E-value=2.6e-10 Score=111.70 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=30.6
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEecc---CCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAES---GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~---g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.+||+.||++||++|.++ ..|+||||+|+.. ++.+++.+|+++|++ ++..|..|.|+||++
T Consensus 66 ~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a 130 (209)
T PHA02859 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMY 130 (209)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 455555555555555554 2455555554332 234555555555555 555555555555543
No 14
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.82 E-value=9.4e-10 Score=121.77 Aligned_cols=108 Identities=11% Similarity=0.095 Sum_probs=58.4
Q ss_pred CCccccccCcCCCCCCCcccccccc----------CCcccCCCCcCCC---CccCCCchhHhhhcccCCccccccccccc
Q 008333 218 GGKLEPYGARGTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQK 284 (570)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~k 284 (570)
|+-+.--|. -.+.|+|||||+.+. |.-+..-...+=. -+|..|+..+|-.||..||++|.+|..|.
T Consensus 101 gadvn~~gG-~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~gr 179 (600)
T KOG0509|consen 101 GADVNAIGG-VLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGR 179 (600)
T ss_pred CCCccccCC-CCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCC
Confidence 555555454 578999999999876 1111111111000 23444455555555555555555555555
Q ss_pred ceEEEEeccCCchHHHHHHHcCCCCCcccC-CCCCceeeeeccc
Q 008333 285 FRVKLLAESGGQSTMDVLCQIGLDGIRMLD-PNTSRTLRIYPLE 327 (570)
Q Consensus 285 TpLHlAa~~g~~~iv~vLlq~Gadgv~~lD-~~gnn~LhIApLe 327 (570)
||||+||++|+...+..|++.|++ +++.| .+|+|+||.|.+.
T Consensus 180 TpLmwAaykg~~~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~ 222 (600)
T KOG0509|consen 180 TPLMWAAYKGFALFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVG 222 (600)
T ss_pred CHHHHHHHhcccHHHHHHHHhccc-ccccccccCCchHHHHHhc
Confidence 555555555555445556666655 55554 5566666665555
No 15
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.80 E-value=1.4e-09 Score=111.50 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=72.4
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
.+|-.+|||||.. |+..||+.||..||+||..+.--.|+|||||..||.+||..|++..+
T Consensus 32 dhgfsplhwaake--------------------gh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~ka 91 (448)
T KOG0195|consen 32 DHGFSPLHWAAKE--------------------GHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKA 91 (448)
T ss_pred ccCcchhhhhhhc--------------------ccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhc
Confidence 4667899997654 46999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
| +++++.+|+++||.|..=
T Consensus 92 d-vnavnehgntplhyacfw 110 (448)
T KOG0195|consen 92 D-VNAVNEHGNTPLHYACFW 110 (448)
T ss_pred c-cchhhccCCCchhhhhhh
Confidence 9 999999999999998664
No 16
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.2e-09 Score=103.02 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=65.2
Q ss_pred ccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHc-CCCCCcccCCCCCceeeeecccc
Q 008333 257 SVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~-Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
++.-|+.+||..|| ..+..+|.||-.|+||||||+-.|..++|++|+.. |+| +++++..|.|+||.|.-+.
T Consensus 45 a~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~ 117 (226)
T KOG4412|consen 45 ACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKG 117 (226)
T ss_pred eeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCC
Confidence 34567899999999 88889999999999999999999999999999999 999 9999999999999997664
No 17
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.76 E-value=3.7e-09 Score=113.94 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=60.6
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIAp 325 (570)
|+.+|||.|+++|||.++.|.+|.|-||||+++||.+|++.|++.||| ++..+..|||+||.+.
T Consensus 128 G~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~ca 191 (615)
T KOG0508|consen 128 GHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCA 191 (615)
T ss_pred chhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHhhh
Confidence 359999999999999999999999999999999999999999999999 9999999999999975
No 18
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.76 E-value=1e-09 Score=103.76 Aligned_cols=82 Identities=9% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHH-c
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQ-I 305 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq-~ 305 (570)
..|.|+||||+..+. .+..++|+.|+..||++|.+| ..|+|+||+|+..|+.++++.|++ .
T Consensus 55 ~~g~t~Lh~Aa~~g~-----------------~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ 117 (166)
T PHA02743 55 HHGRQCTHMVAWYDR-----------------ANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQL 117 (166)
T ss_pred CCCCcHHHHHHHhCc-----------------cCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc
Confidence 356889999987654 112456899999999999998 589999999999999999999994 8
Q ss_pred CCCCCcccCCCCCceeeeeccc
Q 008333 306 GLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 306 Gadgv~~lD~~gnn~LhIApLe 327 (570)
|++ ++..|..|.++||+|...
T Consensus 118 gad-~~~~d~~g~tpL~~A~~~ 138 (166)
T PHA02743 118 GVN-LGAINYQHETAYHIAYKM 138 (166)
T ss_pred CCC-ccCcCCCCCCHHHHHHHc
Confidence 999 889999999999998544
No 19
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.74 E-value=1.6e-09 Score=117.70 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=66.6
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadg 309 (570)
|.|+||+|+..+ +.++|+.||+.||++|.+|..|+||||+|++.|+.++++.|++.|++
T Consensus 168 g~tpLh~A~~~~--------------------~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~- 226 (477)
T PHA02878 168 GNTALHYATENK--------------------DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS- 226 (477)
T ss_pred CCCHHHHHHhCC--------------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-
Confidence 788999987654 48899999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeecc
Q 008333 310 IRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 310 v~~lD~~gnn~LhIApL 326 (570)
++..|..|.|+||+|..
T Consensus 227 in~~d~~g~TpLh~A~~ 243 (477)
T PHA02878 227 TDARDKCGNTPLHISVG 243 (477)
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 88899999999998863
No 20
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.72 E-value=1.8e-09 Score=99.71 Aligned_cols=64 Identities=8% Similarity=0.083 Sum_probs=58.1
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq-~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++|+.|+..||++|.+| ..|+|+||+|++.|+.++++.|++ .|++ +++.|..|.|+||+|...
T Consensus 71 ~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~ 136 (154)
T PHA02736 71 QEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACER 136 (154)
T ss_pred HHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHc
Confidence 367899999999999998 589999999999999999999997 5999 999999999999998543
No 21
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.69 E-value=1.7e-09 Score=90.52 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=29.1
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++|+.|++.|++++. |.|+||+|+..|+.++++.|++.|++ ++..|.+|.|+||+|...
T Consensus 10 ~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 69 (89)
T PF12796_consen 10 LEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAEN 69 (89)
T ss_dssp HHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHT
T ss_pred HHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHc
Confidence 4555555554444443 44455555555555555555555554 444444555555554443
No 22
>PHA02791 ankyrin-like protein; Provisional
Probab=98.68 E-value=2.6e-09 Score=110.33 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=49.4
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC-ceeeeeccc
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIYPLE 327 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gn-n~LhIApLe 327 (570)
|+.+||+.||..||++|.+|..|+||||+|++.|+.+++++|++.|++ ++..+..|. ++||+|...
T Consensus 72 g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~ 138 (284)
T PHA02791 72 EDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVML 138 (284)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHc
Confidence 447777887777887777777778888888887777778888887777 766776663 677777554
No 23
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.68 E-value=3.5e-09 Score=119.82 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=86.1
Q ss_pred CCCCCCCcccccccc----------CCcccCCCCcCCC---CccCCCchhHhhhccc-CCc-ccccccccccceEEEEec
Q 008333 228 GTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPK-VDT-HQDVKSGVQKFRVKLLAE 292 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~-agA-~vn~kd~~~kTpLHlAa~ 292 (570)
-+|.|+||.||.+++ |.+|-+-|...-+ -+|..|....||-||+ .|. ..|..|.+|.||||+|++
T Consensus 271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~ 350 (929)
T KOG0510|consen 271 NDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAK 350 (929)
T ss_pred ccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhh
Confidence 357899999998875 6677777754322 4678899999999998 444 788999999999999999
Q ss_pred cCCchHHHHHHHcCCCCCc--ccCCCCCceeeeecccccccc
Q 008333 293 SGGQSTMDVLCQIGLDGIR--MLDPNTSRTLRIYPLENITRC 332 (570)
Q Consensus 293 ~g~~~iv~vLlq~Gadgv~--~lD~~gnn~LhIApLe~itr~ 332 (570)
.||..++++|++.||+-.+ -.|.+|+|+||+|.++..+.+
T Consensus 351 ~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~a 392 (929)
T KOG0510|consen 351 SGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSA 392 (929)
T ss_pred cCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHH
Confidence 9999999999999999333 349999999999999965433
No 24
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.68 E-value=4e-09 Score=124.52 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=66.4
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
++..|+.++|+.||.+||+++.+|..|+||||.|+..|+.+|+.+|+|+||+ +++.|.++.|+||||..-
T Consensus 547 A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~-vna~d~~g~TpL~iA~~l 616 (1143)
T KOG4177|consen 547 AVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS-VNAADLDGFTPLHIAVRL 616 (1143)
T ss_pred HHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC-CCcccccCcchhHHHHHh
Confidence 5667789999999999999999999999999999999999999999999999 999999999999998655
No 25
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.68 E-value=4.6e-09 Score=101.40 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=68.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
.++.|+||-|||.+. .+||+.||+.||+++.+...|+||||-|+.=.+.+++..|++.|+
T Consensus 95 ~D~YTpLHRAaYn~h--------------------~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhga 154 (228)
T KOG0512|consen 95 EDEYTPLHRAAYNGH--------------------LDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA 154 (228)
T ss_pred cccccHHHHHHhcCc--------------------hHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccC
Confidence 356788888888776 899999999999999999999999999999888899999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
| +++.-.-.-++||+++--
T Consensus 155 D-VnA~t~g~ltpLhlaa~~ 173 (228)
T KOG0512|consen 155 D-VNAQTKGLLTPLHLAAGN 173 (228)
T ss_pred c-ccccccccchhhHHhhcc
Confidence 9 888888888899987443
No 26
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.66 E-value=3.4e-09 Score=110.36 Aligned_cols=77 Identities=8% Similarity=0.090 Sum_probs=67.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
.|.|+||+|+..+. .++|+.|+++||++|.++ ..|.||||+|+..|+.++++.|+++|+
T Consensus 69 ~g~TpLh~Aa~~~~--------------------~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GA 128 (300)
T PHA02884 69 SKTNPLIYAIDCDN--------------------DDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGA 128 (300)
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 46788999876554 899999999999999874 579999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecc
Q 008333 308 DGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApL 326 (570)
+ +++.|..|.|+||+|..
T Consensus 129 d-in~kd~~G~TpL~~A~~ 146 (300)
T PHA02884 129 D-INIQTNDMVTPIELALM 146 (300)
T ss_pred C-CCCCCCCCCCHHHHHHH
Confidence 9 99999999999999854
No 27
>PHA02741 hypothetical protein; Provisional
Probab=98.66 E-value=3.3e-09 Score=100.22 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=57.8
Q ss_pred hhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~-~~kTpLHlAa~~g~~~iv~vLlq-~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.+|++.|+.+||++|.++. .|+|+||+|+..++.++++.|++ .|++ +++.|.+|.|+||+|...
T Consensus 77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~ 142 (169)
T PHA02741 77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDN 142 (169)
T ss_pred HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHC
Confidence 5899999999999999985 89999999999999999999997 6999 999999999999997443
No 28
>PHA02791 ankyrin-like protein; Provisional
Probab=98.65 E-value=3.6e-09 Score=109.21 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.||.+||++|.++ ++||||+|++.|+.+++++|++.|+
T Consensus 28 ~~G~TpLh~Aa~~g~--------------------~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Ga 85 (284)
T PHA02791 28 VHGHSALYYAIADNN--------------------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGM 85 (284)
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCC
Confidence 458899999877665 999999999999999876 5899999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.|+||+|....
T Consensus 86 d-vn~~d~~G~TpLh~Aa~~g 105 (284)
T PHA02791 86 D-DSQFDDKGNTALYYAVDSG 105 (284)
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 9999999999999997764
No 29
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.65 E-value=3.7e-09 Score=112.04 Aligned_cols=68 Identities=12% Similarity=0.050 Sum_probs=56.5
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
.|+.+||+.|+++||++|.++..|.||||+|+..|+.++++.|+++|++ +++.|..|.|+||+|....
T Consensus 112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g 179 (413)
T PHA02875 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKG 179 (413)
T ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 3458888888888888888888888888888888888888888888888 8888888888888886653
No 30
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.65 E-value=3.9e-09 Score=103.49 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=60.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEec--cCCchHHHHHHHc
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE--SGGQSTMDVLCQI 305 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~--~g~~~iv~vLlq~ 305 (570)
+.|.|+||+|+...- .++.+||++||++||++|.+|..|+|+||+|+. .++.+++++|++.
T Consensus 85 ~~g~TpLh~a~~~~~-----------------~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ 147 (209)
T PHA02859 85 DNNLSALHHYLSFNK-----------------NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDS 147 (209)
T ss_pred CCCCCHHHHHHHhCc-----------------cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence 467899999875321 134788888888888888888888888887764 3566788888888
Q ss_pred CCCCCcccCCCCCceeeeec
Q 008333 306 GLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 306 Gadgv~~lD~~gnn~LhIAp 325 (570)
|++ ++..|.+|+|+||++.
T Consensus 148 gad-in~~d~~g~t~Lh~~a 166 (209)
T PHA02859 148 GVS-FLNKDFDNNNILYSYI 166 (209)
T ss_pred CCC-cccccCCCCcHHHHHH
Confidence 888 8888888888888643
No 31
>PHA02795 ankyrin-like protein; Provisional
Probab=98.64 E-value=4.7e-09 Score=114.20 Aligned_cols=69 Identities=9% Similarity=-0.051 Sum_probs=64.9
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
..++.+||+.||.+||++|.+|..|+||||+|++.|+.++++.|+++|++ +++.|..|.|+||+|....
T Consensus 197 ~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g 265 (437)
T PHA02795 197 EPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRG 265 (437)
T ss_pred hcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence 34568999999999999999999999999999999999999999999999 9999999999999997664
No 32
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.64 E-value=5.4e-09 Score=114.25 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=65.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEecc---CCchHHHHHH
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES---GGQSTMDVLC 303 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~---g~~~iv~vLl 303 (570)
++.+.|+||+|+...+ .+..|+.+||+.||++||++|.+|..|.||||+|+.. |+.+++++|+
T Consensus 66 ~~~~~tpL~~a~~~~~--------------~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll 131 (494)
T PHA02989 66 KGYIETPLCAVLRNRE--------------ITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLL 131 (494)
T ss_pred CCCCCCcHHHHHhccC--------------cchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHH
Confidence 3456799998765443 1224568899999999999999999999999876554 5678899999
Q ss_pred HcCCCCC-cccCCCCCceeeeec
Q 008333 304 QIGLDGI-RMLDPNTSRTLRIYP 325 (570)
Q Consensus 304 q~Gadgv-~~lD~~gnn~LhIAp 325 (570)
+.||| + ++.|..|.|+||+|.
T Consensus 132 ~~Gad-in~~~d~~g~tpLh~a~ 153 (494)
T PHA02989 132 SKGIN-VNDVKNSRGYNLLHMYL 153 (494)
T ss_pred HCCCC-cccccCCCCCCHHHHHH
Confidence 99998 7 788889999998864
No 33
>PHA03095 ankyrin-like protein; Provisional
Probab=98.61 E-value=7.4e-09 Score=110.91 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=58.1
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
..+|+.|++.|+++|.+|..|+||||+|+..|+.++++.|++.|+| +++.|.+|.|+||+|....
T Consensus 237 ~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~ 301 (471)
T PHA03095 237 RSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNN 301 (471)
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhC
Confidence 4688889999999999999999999999999999999999999999 8899999999999986553
No 34
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.59 E-value=4.6e-09 Score=87.91 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=50.0
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccC
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD 314 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD 314 (570)
++..|+.+||+.|+..|+++|.+|..|+|+||+|++.|+.+++++|++.|++ ++..|
T Consensus 33 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~n 89 (89)
T PF12796_consen 33 AAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGAD-VNIRN 89 (89)
T ss_dssp HHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT--TTSS-
T ss_pred HHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcC
Confidence 4567789999999999999999999999999999999999999999999999 66543
No 35
>PHA02741 hypothetical protein; Provisional
Probab=98.58 E-value=6.1e-09 Score=98.38 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=67.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcc------cCCcccccccccccceEEEEeccCC----chH
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP------KVDTHQDVKSGVQKFRVKLLAESGG----QST 298 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll------~agA~vn~kd~~~kTpLHlAa~~g~----~~i 298 (570)
.|.|+||+|+..+. .+||+.|+ ..|+++|.+|..|+|+||+|+..|+ .++
T Consensus 20 ~g~t~Lh~Aa~~g~--------------------~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~i 79 (169)
T PHA02741 20 EGENFFHEAARCGC--------------------FDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEI 79 (169)
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHH
Confidence 57788998776654 89999874 4579999999999999999999998 478
Q ss_pred HHHHHHcCCCCCcccCC-CCCceeeeecccc
Q 008333 299 MDVLCQIGLDGIRMLDP-NTSRTLRIYPLEN 328 (570)
Q Consensus 299 v~vLlq~Gadgv~~lD~-~gnn~LhIApLe~ 328 (570)
++.|++.|++ ++..|. +|+|+||+|....
T Consensus 80 i~~Ll~~gad-in~~~~~~g~TpLh~A~~~~ 109 (169)
T PHA02741 80 IDHLIELGAD-INAQEMLEGDTALHLAAHRR 109 (169)
T ss_pred HHHHHHcCCC-CCCCCcCCCCCHHHHHHHcC
Confidence 9999999999 988885 9999999986654
No 36
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.56 E-value=9.8e-09 Score=110.11 Aligned_cols=80 Identities=6% Similarity=0.047 Sum_probs=66.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+ +.++|+.|++.||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 122 ~~g~T~Lh~A~~~~--------------------~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~ 181 (434)
T PHA02874 122 AELKTFLHYAIKKG--------------------DLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA 181 (434)
T ss_pred CCCccHHHHHHHCC--------------------CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC
Confidence 45678899877544 4888888888888888888888889998888888888888888888
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ +++.|..|.|+||+|....
T Consensus 182 ~-~n~~~~~g~tpL~~A~~~g 201 (434)
T PHA02874 182 Y-ANVKDNNGESPLHNAAEYG 201 (434)
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 8 8888888888888886653
No 37
>PHA03095 ankyrin-like protein; Provisional
Probab=98.56 E-value=1.1e-08 Score=109.72 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=68.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC-CchHHHHHHHcCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG-GQSTMDVLCQIGL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g-~~~iv~vLlq~Ga 307 (570)
.|.|+||+|+.... .++.++|+.|++.||++|.+|..|+||||+|++.| ..+++++|++.|+
T Consensus 46 ~g~t~Lh~a~~~~~-----------------~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga 108 (471)
T PHA03095 46 YGKTPLHLYLHYSS-----------------EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGA 108 (471)
T ss_pred CCCCHHHHHHHhcC-----------------CChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCC
Confidence 46799999876541 23589999999999999999999999999999999 4899999999999
Q ss_pred CCCcccCCCCCceeeeec
Q 008333 308 DGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIAp 325 (570)
+ ++..|..|.|+||+|.
T Consensus 109 ~-in~~~~~g~tpLh~a~ 125 (471)
T PHA03095 109 D-VNAKDKVGRTPLHVYL 125 (471)
T ss_pred C-CCCCCCCCCCHHHHHh
Confidence 9 9999999999999986
No 38
>PHA02946 ankyin-like protein; Provisional
Probab=98.56 E-value=1.3e-08 Score=110.85 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=60.6
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIAp 325 (570)
++++||+.||.+||++|.+|..|+||||+|++.|+.++|++|+++|+| +++.|.+|.|+||+|.
T Consensus 50 ~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~ 113 (446)
T PHA02946 50 LDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD-PNACDKQHKTPLYYLS 113 (446)
T ss_pred CCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHH
Confidence 468999999999999999999999999999999999999999999999 9999999999999864
No 39
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.53 E-value=1.6e-08 Score=116.64 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=59.9
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCc--hHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ--STMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~--~iv~vLlq~Gadgv~~lD~~gnn~LhIAp 325 (570)
++.+||+.||+.||++|.+|..|+||||+|++.|+. ++|+.|+++||| +++.|..|.|+||.|.
T Consensus 190 ~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD-VN~kD~~G~TPLh~Ai 255 (764)
T PHA02716 190 VDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD-MDMKCVNGMSPIMTYI 255 (764)
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence 468999999999999999999999999999999964 899999999999 9999999999999764
No 40
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.52 E-value=1.4e-08 Score=108.80 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 155 ~~g~tpLh~A~~~~~--------------------~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~ 214 (434)
T PHA02874 155 DNGCYPIHIAIKHNF--------------------FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214 (434)
T ss_pred CCCCCHHHHHHHCCc--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 457899999886554 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ +...+..|.|+||+|....
T Consensus 215 ~-i~~~~~~g~TpL~~A~~~~ 234 (434)
T PHA02874 215 H-IMNKCKNGFTPLHNAIIHN 234 (434)
T ss_pred C-CcCCCCCCCCHHHHHHHCC
Confidence 9 8899999999999987654
No 41
>PHA02798 ankyrin-like protein; Provisional
Probab=98.51 E-value=1.8e-08 Score=110.12 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=67.7
Q ss_pred CcCCCCCCCcccccc--ccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC---CchHHH
Q 008333 226 ARGTVPKSSNSTLFD--DYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG---GQSTMD 300 (570)
Q Consensus 226 ~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g---~~~iv~ 300 (570)
..+.|.|+||+|+-. ++ .+..+||+.|+++||++|.+|..|+||||+|+..+ +.+++.
T Consensus 67 ~d~~g~TpL~~~~~n~~~~-----------------~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~ 129 (489)
T PHA02798 67 LDNEYSTPLCTILSNIKDY-----------------KHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILL 129 (489)
T ss_pred CCCCCCChHHHHHHhHHhH-----------------HhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHH
Confidence 346778899887632 22 23478999999999999999999999999998875 568899
Q ss_pred HHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 301 VLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 301 vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.|++.|+| +++.|.+|.|+||+|...
T Consensus 130 ~Ll~~Gad-vn~~d~~g~tpL~~a~~~ 155 (489)
T PHA02798 130 FMIENGAD-TTLLDKDGFTMLQVYLQS 155 (489)
T ss_pred HHHHcCCC-ccccCCCCCcHHHHHHHc
Confidence 99999999 889999999999987554
No 42
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.51 E-value=2.4e-08 Score=107.87 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=79.4
Q ss_pred CCCCCCCcccccccc----------CCcccCCCCcCCC---CccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008333 228 GTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g 294 (570)
-|++|+|.-|.||+- |.-+..+|-.+-. -++..|+.+|++.||+.|||+|.++-.|+|+||.+|+.|
T Consensus 115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG 194 (615)
T KOG0508|consen 115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESG 194 (615)
T ss_pred ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcc
Confidence 477888888888852 3333333322110 356678899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 295 ~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+.+|+.+|+++|+. + ++|..|-|+|..|.+..
T Consensus 195 ~vdivq~Ll~~ga~-i-~~d~~GmtPL~~Aa~tG 226 (615)
T KOG0508|consen 195 SVDIVQLLLKHGAK-I-DVDGHGMTPLLLAAVTG 226 (615)
T ss_pred cHHHHHHHHhCCce-e-eecCCCCchHHHHhhhc
Confidence 99999999999998 6 67888999998886653
No 43
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-08 Score=111.82 Aligned_cols=63 Identities=29% Similarity=0.620 Sum_probs=53.3
Q ss_pred CCCcccCCCCccccccCcccc-CccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 419 KDHWVPDEAVSKCTACGTDFS-AFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~Fs-l~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.+.| +.+...|+.|+..|+ .+.|||||+.||.++|++|+.++..+.. .+....|||..|+...
T Consensus 408 ~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~-~~s~ssrv~~~~~~~~ 471 (623)
T KOG4424|consen 408 APRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSY-DNSRSSRVCMDRYLTP 471 (623)
T ss_pred Cccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcc-cccchhhhhhhhccCC
Confidence 3455 777899999999998 5689999999999999999999887765 3457789999999754
No 44
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.49 E-value=2e-08 Score=116.87 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCC-------------------------------chHHHHHHHcCCC
Q 008333 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-------------------------------QSTMDVLCQIGLD 308 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~-------------------------------~~iv~vLlq~Gad 308 (570)
.|+.++|+.||.+||++|.+|..|+||||+|+..|+ .++++.|+++|+|
T Consensus 568 ~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad 647 (823)
T PLN03192 568 KGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN 647 (823)
T ss_pred cChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCC
Confidence 345999999999999999999999999886655554 4556678889999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
+++.|.+|.|+||+|..+.
T Consensus 648 -in~~d~~G~TpLh~A~~~g 666 (823)
T PLN03192 648 -VDSEDHQGATALQVAMAED 666 (823)
T ss_pred -CCCCCCCCCCHHHHHHHCC
Confidence 9999999999999987664
No 45
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.49 E-value=3.1e-08 Score=103.57 Aligned_cols=71 Identities=31% Similarity=0.746 Sum_probs=59.7
Q ss_pred CCCCCCCCCcccCCCCccccccCccccC-----------ccccccccccCceeccCCCcceEEeccCCCCCceeeccccH
Q 008333 413 KPGNEEKDHWVPDEAVSKCTACGTDFSA-----------FVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (570)
Q Consensus 413 ~p~~~~~~~Wvpd~~~~~C~~C~~~Fsl-----------~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy 481 (570)
+-..++.+.|+.+. .|..|...|.. -.|.||||+||+.||..|++++...+..+....+|+|+.||
T Consensus 270 n~~r~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~ 346 (404)
T KOG1409|consen 270 NVKRVETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCY 346 (404)
T ss_pred cceeecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccc
Confidence 33455678999876 89999988742 35899999999999999999999988888888999999999
Q ss_pred HHHHh
Q 008333 482 AEVTQ 486 (570)
Q Consensus 482 ~~l~~ 486 (570)
..+..
T Consensus 347 ~~i~~ 351 (404)
T KOG1409|consen 347 PTIKD 351 (404)
T ss_pred hhhhc
Confidence 98754
No 46
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.47 E-value=2.9e-08 Score=105.27 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=74.8
Q ss_pred CCCCCccccccc----------cCCcccCCCCcCCC---CccCCCchhHhhhcccCCcccccccccccceEEEEeccCCc
Q 008333 230 VPKSSNSTLFDD----------YGRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ 296 (570)
Q Consensus 230 ~~~~~~~a~~~~----------~~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~ 296 (570)
|.|+||+|+..+ +|-.+...+..... .++..|+.++|+.|+++|+++|.+|..|+||||+|+..|+.
T Consensus 102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~ 181 (413)
T PHA02875 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDI 181 (413)
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 567788777653 23333222221110 34567789999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCcccCCCCC-ceeeeeccc
Q 008333 297 STMDVLCQIGLDGIRMLDPNTS-RTLRIYPLE 327 (570)
Q Consensus 297 ~iv~vLlq~Gadgv~~lD~~gn-n~LhIApLe 327 (570)
++++.|++.|++ ++..+.+|. ++||+|...
T Consensus 182 eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~ 212 (413)
T PHA02875 182 AICKMLLDSGAN-IDYFGKNGCVAALCYAIEN 212 (413)
T ss_pred HHHHHHHhCCCC-CCcCCCCCCchHHHHHHHc
Confidence 999999999999 889988886 567766554
No 47
>PHA02798 ankyrin-like protein; Provisional
Probab=98.47 E-value=1.7e-08 Score=110.16 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=71.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCC---chHHHHHHH
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG---QSTMDVLCQ 304 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~---~~iv~vLlq 304 (570)
..|.|+||+|+...+ .++.+||+.|+++||++|++|..|.||||+|++.++ .++++.|++
T Consensus 107 ~~G~TpLh~a~~~~~-----------------~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~ 169 (489)
T PHA02798 107 SDGETPLYCLLSNGY-----------------INNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE 169 (489)
T ss_pred CCcCcHHHHHHHcCC-----------------cChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence 568899999987654 246899999999999999999999999999999988 799999999
Q ss_pred cCCCCCcccC-CCCCceeeeeccc
Q 008333 305 IGLDGIRMLD-PNTSRTLRIYPLE 327 (570)
Q Consensus 305 ~Gadgv~~lD-~~gnn~LhIApLe 327 (570)
.|+| ++..+ ..+.++||.+...
T Consensus 170 ~gad-in~~~~~~~~t~Lh~~~~~ 192 (489)
T PHA02798 170 KGVD-INTHNNKEKYDTLHCYFKY 192 (489)
T ss_pred hCCC-cccccCcCCCcHHHHHHHh
Confidence 9999 87764 5788999976544
No 48
>PHA02730 ankyrin-like protein; Provisional
Probab=98.46 E-value=2.6e-08 Score=113.23 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=68.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC--CchHHHHHHHc
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQI 305 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g--~~~iv~vLlq~ 305 (570)
..|.|+||||+..++ -|+.+||++||.+||++|++|..|+||||+|+..+ +.++|++|++.
T Consensus 39 ~~G~TaLh~A~~~~~-----------------~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~ 101 (672)
T PHA02730 39 RRGNNALHCYVSNKC-----------------DTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISS 101 (672)
T ss_pred CCCCcHHHHHHHcCC-----------------cCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhc
Confidence 357899999988753 23589999999999999999999999999999976 68999999999
Q ss_pred CCCC-CcccCCCCCceeeeecc
Q 008333 306 GLDG-IRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 306 Gadg-v~~lD~~gnn~LhIApL 326 (570)
|++- ++..|..+.++||.+..
T Consensus 102 ~~~~~~~~~~~~~d~~l~~y~~ 123 (672)
T PHA02730 102 YSNASNELTSNINDFDLYSYMS 123 (672)
T ss_pred CCCCCcccccccCCchHHHHHH
Confidence 7640 35677678889988866
No 49
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.46 E-value=1.4e-08 Score=78.71 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=42.6
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLl 303 (570)
|-|+||+|+..+ +.++|+.|++.|+++|.+|..|.||||+|+..|+.++++.|+
T Consensus 1 g~t~lh~A~~~g--------------------~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSG--------------------NLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT---------------------HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhC--------------------CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456788877655 499999999999999999999999999999999999999886
No 50
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.46 E-value=2.8e-08 Score=108.05 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=66.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEecc-CCchHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES-GGQSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~-g~~~iv~vLlq~G 306 (570)
..|.|+||+|+..+ +.+||+.||..||++|.+|..|+||||+|+.. ++.+++++|++.|
T Consensus 199 ~~g~tpLh~A~~~~--------------------~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g 258 (477)
T PHA02878 199 KTNNSPLHHAVKHY--------------------NKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHG 258 (477)
T ss_pred CCCCCHHHHHHHhC--------------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC
Confidence 45778999876554 48999999999999999999999999999976 6789999999999
Q ss_pred CCCCcccCC-CCCceeeee
Q 008333 307 LDGIRMLDP-NTSRTLRIY 324 (570)
Q Consensus 307 adgv~~lD~-~gnn~LhIA 324 (570)
++ +++.+. .|.|+||+|
T Consensus 259 ad-vn~~~~~~g~TpLh~A 276 (477)
T PHA02878 259 VD-VNAKSYILGLTALHSS 276 (477)
T ss_pred CC-CCccCCCCCCCHHHHH
Confidence 99 888875 799999998
No 51
>PHA02946 ankyin-like protein; Provisional
Probab=98.46 E-value=2.6e-08 Score=108.57 Aligned_cols=63 Identities=6% Similarity=0.069 Sum_probs=38.0
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccC--CchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g--~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApL 326 (570)
+.++|+.|++.||++|.+|..|+||||+|++.| +.+++.+|++ |++ ++..|..|.|+||+|..
T Consensus 187 ~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~ 251 (446)
T PHA02946 187 KASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIK 251 (446)
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHH
Confidence 345666666666666666666666666666654 3345555553 566 66666666666666544
No 52
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.44 E-value=3.4e-08 Score=106.23 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccC--CchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG--GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g--~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.|+.++|+.|++.||++|.+|..|+|+||+|++.| +.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 118 ~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 118 SNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEK 186 (480)
T ss_pred cChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHh
Confidence 34577777777777777777777777888777777 67777777777777 777777777777777655
No 53
>PHA02917 ankyrin-like protein; Provisional
Probab=98.43 E-value=4.4e-08 Score=111.81 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=76.8
Q ss_pred CcCCCCCCCccccccccCCcccCCC----CcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHH
Q 008333 226 ARGTVPKSSNSTLFDDYGRSISFPS----AKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (570)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~v 301 (570)
+...|.|+||.|+.-.++ .+.|-. ..........+..++|+.||.+||++|.+|..|+||||+|+..++.++++.
T Consensus 392 ~~~~G~TpL~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~ 470 (661)
T PHA02917 392 HLDDGEIPIGHLCKSNYG-CYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSL 470 (661)
T ss_pred cCCCCCChhHHHHHhccc-chhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHH
Confidence 456799999998744331 000100 000001223446889999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccCCCCCceeeeecc
Q 008333 302 LCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 302 Llq~Gadgv~~lD~~gnn~LhIApL 326 (570)
|++.|+| +++.|..|.|+||+|..
T Consensus 471 Ll~~GAd-in~~d~~G~T~L~~A~~ 494 (661)
T PHA02917 471 LLESGSD-VNIRSNNGYTCIAIAIN 494 (661)
T ss_pred HHHCcCC-CCCCCCCCCCHHHHHHH
Confidence 9999999 99999999999999864
No 54
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.42 E-value=3.8e-08 Score=102.65 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=61.7
Q ss_pred cCCCchhHhhhcccCCccccccc----ccccceEEEEeccCCchHHHHHHHcCCCCCccc-CCCCCceeeeecccc
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKS----GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML-DPNTSRTLRIYPLEN 328 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd----~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~l-D~~gnn~LhIApLe~ 328 (570)
+..|+.++|+.||++||++|.++ ..|+||||+|++.|+.+++++|+++||| ++.. +..|.|+||+|....
T Consensus 41 ~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~~~~g~TpLh~Aa~~~ 115 (300)
T PHA02884 41 IKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYAEEAKITPLYISVLHG 115 (300)
T ss_pred HHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCcccCCCCCCHHHHHHHcC
Confidence 34456999999999999999974 6899999999999999999999999999 8875 567999999987654
No 55
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.39 E-value=8.3e-08 Score=95.70 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=64.0
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccccc
Q 008333 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~itr~ 332 (570)
+-|+..+|+.||..||++++..+...++|.||.+.|..+||++|+..+.| +++.|-+|-|+|-.|+..+-++|
T Consensus 169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkc 241 (296)
T KOG0502|consen 169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKC 241 (296)
T ss_pred hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHH
Confidence 33458999999999999999999999999999999999999999999999 99999999999999888865554
No 56
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.39 E-value=3.9e-08 Score=107.58 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccc-ccccccccceEEEEecc--CCchHHHHHHHc
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQ-DVKSGVQKFRVKLLAES--GGQSTMDVLCQI 305 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~v-n~kd~~~kTpLHlAa~~--g~~~iv~vLlq~ 305 (570)
.|.|+||+|++.. ..|+.+||+.||.+||++ +.+|..|+||||+|++. ++.++++.|++.
T Consensus 107 ~g~tpL~~a~~~~-----------------~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~ 169 (494)
T PHA02989 107 NGVSPIVCFIYNS-----------------NINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF 169 (494)
T ss_pred CCCcHHHHHHHhc-----------------ccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence 4567788776532 235689999999999999 89999999999998754 567999999999
Q ss_pred CCCCCcc-cCCCCCceeeeecccc
Q 008333 306 GLDGIRM-LDPNTSRTLRIYPLEN 328 (570)
Q Consensus 306 Gadgv~~-lD~~gnn~LhIApLe~ 328 (570)
|+| ++. .|..|.|+||++....
T Consensus 170 Gad-i~~~~~~~g~tpL~~a~~~~ 192 (494)
T PHA02989 170 GVN-LFEKTSLYGLTPMNIYLRND 192 (494)
T ss_pred CCC-ccccccccCCChHHHHHhcc
Confidence 999 766 6788999999875543
No 57
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.37 E-value=6.8e-08 Score=109.62 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=56.3
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccC-CchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG-GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g-~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApL 326 (570)
+..++|+.|++.||++|.+|..|+||||+|++.| +.+++++|++.|+| +++.|..|.|+||+|..
T Consensus 420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad-~n~~d~~g~tpl~~a~~ 485 (682)
T PHA02876 420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD-VNAINIQNQYPLLIALE 485 (682)
T ss_pred CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence 4467889999999999999999999999999876 46889999999999 88999999999988753
No 58
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.34 E-value=8e-08 Score=109.69 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=66.4
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
++..|+.++|+.||+.||++|.+|..|+|+||+|+..|+.++++.|+++|+| +++.|.+|.|+||+|....
T Consensus 89 aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g 159 (664)
T PTZ00322 89 LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENG 159 (664)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 3556779999999999999999999999999999999999999999999999 9999999999999998764
No 59
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.34 E-value=8e-08 Score=111.89 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=66.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+|..|+.++|+.||++|+++|.+|..|+||||+|+..|+.+++++|++.|+| ++..|.+|+|+||.|...
T Consensus 532 Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A~~~ 601 (823)
T PLN03192 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNAISA 601 (823)
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHHHHh
Confidence 5677899999999999999999999999999999999999999999999999 999999999999998665
No 60
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.33 E-value=1.4e-07 Score=101.60 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=64.4
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEe--ccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLA--ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa--~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
++..|+.++|+.|++.||++|.+|..|.||||+|+ +.|+.++++.|++.|++ ++..|..|.++||+|....
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESN 152 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcC
Confidence 34445699999999999999999999999999999 99999999999999999 9999999999999986554
No 61
>PHA02792 ankyrin-like protein; Provisional
Probab=98.33 E-value=7.7e-08 Score=108.65 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=59.1
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApL 326 (570)
.+|++.|+++||++|.+|..|+||||+|++.++.++++.|+++|++ ++..|..|.|+||+|..
T Consensus 390 ~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD-IN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 390 LSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD-INITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence 4688999999999999999999999999999999999999999999 99999999999999743
No 62
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.32 E-value=9.2e-08 Score=108.53 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=76.2
Q ss_pred cCCCCCCCcccccccc-----------CCcccCCCCcCCC---Cc-cCCCchhHhhhcccCCcccccccccccceEEEEe
Q 008333 227 RGTVPKSSNSTLFDDY-----------GRSISFPSAKDSR---SS-VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLA 291 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~-----------~~~~~~~~~~~~~---~~-~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa 291 (570)
-..|.|+||+|+..++ |..+......... -+ ...++.++|+.|++.||++|.+|..|+||||+|+
T Consensus 304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa 383 (682)
T PHA02876 304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383 (682)
T ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Confidence 3567899999987653 2222211111000 01 1245789999999999999999999999999999
Q ss_pred ccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 292 ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 292 ~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
..|+.++++.|++.|++ ++..+..|.|+||+|...
T Consensus 384 ~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~ 418 (682)
T PHA02876 384 VRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCG 418 (682)
T ss_pred HcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHc
Confidence 99999999999999999 889999999999998643
No 63
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.32 E-value=1.5e-07 Score=89.01 Aligned_cols=69 Identities=7% Similarity=-0.068 Sum_probs=60.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
..|.|+||+|+..+. .+||+.|+ +.|++++.+|..++||||+|+..++.+++++|++.|
T Consensus 92 ~~g~TpLh~A~~~g~--------------------~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 151 (166)
T PHA02743 92 GTGNTLLHIAASTKN--------------------YELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG 151 (166)
T ss_pred CCCCcHHHHHHHhCC--------------------HHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 468899999886554 89999999 589999999999999999999999999999999999
Q ss_pred CCCCcccCCCC
Q 008333 307 LDGIRMLDPNT 317 (570)
Q Consensus 307 adgv~~lD~~g 317 (570)
++ ++..+-.|
T Consensus 152 a~-~~~~~~~~ 161 (166)
T PHA02743 152 AV-CDDPLSIG 161 (166)
T ss_pred CC-CCCcccCC
Confidence 99 76655554
No 64
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.30 E-value=4.9e-08 Score=112.00 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc--------------ccccceEEEEeccC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS--------------GVQKFRVKLLAESG 294 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd--------------~~~kTpLHlAa~~g 294 (570)
.|.|+||+||-.+. .+||+.||+.||++|.++ ..|.|+||+|+..|
T Consensus 127 ~G~TpLhlAa~~~~--------------------~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~ 186 (743)
T TIGR00870 127 PGITALHLAAHRQN--------------------YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186 (743)
T ss_pred CCCcHHHHHHHhCC--------------------HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhC
Confidence 47899999877664 999999999999999764 25899999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 295 ~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+.+++++|+++|+| ++..|..|+|+||+|.++.
T Consensus 187 ~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 187 SPSIVALLSEDPAD-ILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred CHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhh
Confidence 99999999999999 9999999999999998874
No 65
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.30 E-value=1.2e-07 Score=109.34 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=53.4
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEec--------------cCCchHHHHHHHcCCCCCcccCCCCCceeee
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE--------------SGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~--------------~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhI 323 (570)
++.+||+.||+.||++|.+|..|+||||+|+. .++.+++++|++.|+| +++.|..|.|+||.
T Consensus 330 ~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~ 405 (764)
T PHA02716 330 ISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTS 405 (764)
T ss_pred CCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHH
Confidence 35789999999999999999999999998754 3567889999999999 88999999999984
No 66
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.29 E-value=2.1e-07 Score=86.34 Aligned_cols=93 Identities=8% Similarity=0.079 Sum_probs=78.7
Q ss_pred ccccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCc---ccccccccccceEEEEeccCCc
Q 008333 220 KLEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT---HQDVKSGVQKFRVKLLAESGGQ 296 (570)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA---~vn~kd~~~kTpLHlAa~~g~~ 296 (570)
.+++.----.|.|+||+|++.+.- ..|+.++|+.||++|+ ..+.+|..|+||||+|+..|+.
T Consensus 96 ~~~~~~~~~~g~t~l~~a~~~~~~---------------~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~ 160 (235)
T COG0666 96 GADVNAKDADGDTPLHLAALNGNP---------------PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160 (235)
T ss_pred CCCcccccCCCCcHHHHHHhcCCc---------------ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCch
Confidence 345555566788999999988751 4567999999999999 5555699999999999999999
Q ss_pred hHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 297 STMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 297 ~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
.++.+|++.|++ ++..+..|.++|+++....
T Consensus 161 ~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~ 191 (235)
T COG0666 161 DIVELLLEAGAD-PNSRNSYGVTALDPAAKNG 191 (235)
T ss_pred HHHHHHHhcCCC-CcccccCCCcchhhhcccc
Confidence 999999999999 8899999999999985553
No 67
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.28 E-value=1.6e-07 Score=99.15 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=61.0
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeee
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq-~Gadgv~~lD~~gnn~LhIA 324 (570)
+|.-|..++|++||..|||||++|-.|-|+|.+|++.||.+|+.+||- .+.| +.+.|.+|.|+|.||
T Consensus 347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd-~sLtD~DgSTAl~IA 414 (452)
T KOG0514|consen 347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD-ISLTDVDGSTALSIA 414 (452)
T ss_pred hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc-ceeecCCCchhhhhH
Confidence 566778999999999999999999999999999999999999998887 5577 779999999999997
No 68
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=1.6e-07 Score=99.91 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=56.5
Q ss_pred CCCCcccCCCCccccccCcccc-CccccccccccCceeccCCCcceEEecc-CCCCCceeeccccHHHH
Q 008333 418 EKDHWVPDEAVSKCTACGTDFS-AFVRKHHCRNCGDIFCDKCTHGRIALTA-DANAQPVRVCDRCMAEV 484 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fs-l~~RKHHCR~CG~vfC~~CS~~~~~Lp~-~~~~~pvRVC~~Cy~~l 484 (570)
+.+.|..++....|+.|...|+ ++.||||||+|+.+||..|+..+-.++. ..-..++|||+.|+..+
T Consensus 150 ~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl 218 (473)
T KOG1843|consen 150 EAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL 218 (473)
T ss_pred cCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence 4688999999999999999999 5689999999999999999987554442 23356789999999866
No 69
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.26 E-value=2.5e-07 Score=105.24 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=37.1
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++|+.|+++||+.+..|..+++|||+|+..|..+.+.+|++.|+| +++.|.++.|+||+|..+
T Consensus 101 ~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~ 164 (929)
T KOG0510|consen 101 GDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARK 164 (929)
T ss_pred HHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhc
Confidence 4555555555555555555555555555555555555555555555 555555555555555544
No 70
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.26 E-value=2.5e-07 Score=101.22 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=73.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
-+|-|+||-+..|+. ..||+.|+..||.||..|+.+|||||.|+--||..|+..||++||
T Consensus 71 ~DglTalhq~~id~~--------------------~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA 130 (527)
T KOG0505|consen 71 VDGLTALHQACIDDN--------------------LEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA 130 (527)
T ss_pred CccchhHHHHHhccc--------------------HHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence 356788999888887 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ +.++|.+|+-++-++.-+.
T Consensus 131 ~-~~avNsdg~~P~dl~e~ea 150 (527)
T KOG0505|consen 131 N-LLAVNSDGNMPYDLAEDEA 150 (527)
T ss_pred h-hhhccCCCCCccccccCcc
Confidence 9 9999999999998875554
No 71
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.26 E-value=1.8e-07 Score=86.42 Aligned_cols=50 Identities=10% Similarity=0.047 Sum_probs=46.3
Q ss_pred CCCchhHhhhccc-CCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 259 GSGSSKIVRAVPK-VDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 259 ~~g~~~iVr~Ll~-agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
..|+.+||+.||. .|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 101 ~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 101 YTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred HhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3456999999997 6999999999999999999999999999999999998
No 72
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.25 E-value=1.2e-07 Score=83.63 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=63.1
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHH
Q 008333 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (570)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~v 301 (570)
|-||.| ++||+|| || |..+|++.|+.-||++|.+|+.+-|||--|+.+||.+.|++
T Consensus 30 ~~~ggR----~plhyAA--D~------------------GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVkl 85 (117)
T KOG4214|consen 30 EIYGGR----TPLHYAA--DY------------------GQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKL 85 (117)
T ss_pred HHhCCc----ccchHhh--hc------------------chHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHH
Confidence 456544 8999976 44 56999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccCCCCCce
Q 008333 302 LCQIGLDGIRMLDPNTSRT 320 (570)
Q Consensus 302 Llq~Gadgv~~lD~~gnn~ 320 (570)
|+++||| -.+.-++|-+.
T Consensus 86 LL~~GAd-rt~~~PdG~~~ 103 (117)
T KOG4214|consen 86 LLQNGAD-RTIHAPDGTAL 103 (117)
T ss_pred HHHcCcc-cceeCCCchhH
Confidence 9999999 55666777433
No 73
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.22 E-value=2.8e-07 Score=100.89 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=71.5
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadg 309 (570)
|.|.||.||-++| ..+.++||++|.+++++|..|+||||-||.=|..+++++|+++|++
T Consensus 198 G~T~lHvAaa~Gy--------------------~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~- 256 (527)
T KOG0505|consen 198 GATALHVAAANGY--------------------TEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD- 256 (527)
T ss_pred cchHHHHHHhhhH--------------------HHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc-
Confidence 7888999888888 9999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeeccc
Q 008333 310 IRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 310 v~~lD~~gnn~LhIApLe 327 (570)
+++....|.++|-++.-+
T Consensus 257 ~d~~t~~g~~p~dv~dee 274 (527)
T KOG0505|consen 257 MDAKTKMGETPLDVADEE 274 (527)
T ss_pred cchhhhcCCCCccchhhh
Confidence 999999999998876443
No 74
>PHA02917 ankyrin-like protein; Provisional
Probab=98.19 E-value=2.6e-07 Score=105.64 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=59.6
Q ss_pred CCCchhHhhhcccCCcccccccc---cc-----------cceEEEEec-----------cCCchHHHHHHHcCCCCCccc
Q 008333 259 GSGSSKIVRAVPKVDTHQDVKSG---VQ-----------KFRVKLLAE-----------SGGQSTMDVLCQIGLDGIRML 313 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~---~~-----------kTpLHlAa~-----------~g~~~iv~vLlq~Gadgv~~l 313 (570)
..|+.+||++||++||++|.+|. .| +|+||+|+. .++.++++.|++.|+| ++..
T Consensus 147 ~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~ 225 (661)
T PHA02917 147 DDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSI 225 (661)
T ss_pred cCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccC
Confidence 46789999999999999987654 23 599999975 4577999999999999 9999
Q ss_pred CCCCCceeeeecccc
Q 008333 314 DPNTSRTLRIYPLEN 328 (570)
Q Consensus 314 D~~gnn~LhIApLe~ 328 (570)
|.+|.|+||+|....
T Consensus 226 d~~G~TpLh~A~~~g 240 (661)
T PHA02917 226 DKNYCTALQYYIKSS 240 (661)
T ss_pred CCCCCcHHHHHHHcC
Confidence 999999999998653
No 75
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.17 E-value=1.2e-07 Score=74.61 Aligned_cols=44 Identities=9% Similarity=-0.044 Sum_probs=29.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEE
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLL 290 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlA 290 (570)
-..|.|+||||+..+. .++|+.||+.|++++++|..|+||||+|
T Consensus 13 d~~G~T~LH~A~~~g~--------------------~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 13 DKYGNTPLHWAARYGH--------------------SEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -TTS--HHHHHHHHT---------------------HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCCcHHHHHHHcCc--------------------HHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 3457799999998765 9999999999999999999999999987
No 76
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.17 E-value=7.4e-07 Score=89.05 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=75.4
Q ss_pred CCCCCCCccccccccCCcccC--CCCcC------CC-----CccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008333 228 GTVPKSSNSTLFDDYGRSISF--PSAKD------SR-----SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~-----~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g 294 (570)
..|.|+|.|||.++-=.-+-| -++-+ .| -+...|..+||++||..+.+||+-|-+|-|||-+|++.+
T Consensus 158 e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgn 237 (296)
T KOG0502|consen 158 EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGN 237 (296)
T ss_pred ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCC
Confidence 346799999998763111111 11110 01 133467899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 295 ~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
|.++|+.|++.||| +...|..|++.+.+|
T Consensus 238 hvkcve~Ll~sGAd-~t~e~dsGy~~mdlA 266 (296)
T KOG0502|consen 238 HVKCVESLLNSGAD-VTQEDDSGYWIMDLA 266 (296)
T ss_pred hHHHHHHHHhcCCC-cccccccCCcHHHHH
Confidence 99999999999999 989999999887665
No 77
>PHA02795 ankyrin-like protein; Provisional
Probab=98.12 E-value=3.8e-07 Score=99.48 Aligned_cols=68 Identities=7% Similarity=0.064 Sum_probs=57.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCC--------chHH
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG--------QSTM 299 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~--------~~iv 299 (570)
..|.|+||+|+..+ +.++|+.||++||++|.+|..|+||||+|++.|+ .+++
T Consensus 219 ~~G~TpLh~Aa~~g--------------------~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIv 278 (437)
T PHA02795 219 AGGRTLLYRAIYAG--------------------YIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKIL 278 (437)
T ss_pred CCCCCHHHHHHHcC--------------------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHH
Confidence 35678888877655 4999999999999999999999999999999984 4899
Q ss_pred HHHHHcCCCCCcccCCC
Q 008333 300 DVLCQIGLDGIRMLDPN 316 (570)
Q Consensus 300 ~vLlq~Gadgv~~lD~~ 316 (570)
++|++.|++ ++.++..
T Consensus 279 elLL~~gad-I~~~~~~ 294 (437)
T PHA02795 279 EILLREPLS-IDCIKLA 294 (437)
T ss_pred HHHHhCCCC-CCchhHH
Confidence 999999999 7665443
No 78
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=9.1e-07 Score=96.75 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=53.6
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHH
Q 008333 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDV 301 (570)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~v 301 (570)
+|--+-.-|-|+||. ++-.||.+|||.||.+||+||..|.+||||||+||--++..+|+.
T Consensus 575 DpSqpNdEGITaLHN--------------------AiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckq 634 (752)
T KOG0515|consen 575 DPSQPNDEGITALHN--------------------AICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQ 634 (752)
T ss_pred CCCCCCccchhHHhh--------------------hhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHH
Confidence 344455667777777 345667888999999999999889999999999888888888888
Q ss_pred HHHcCCC
Q 008333 302 LCQIGLD 308 (570)
Q Consensus 302 Llq~Gad 308 (570)
|+|.|+-
T Consensus 635 LVe~Gaa 641 (752)
T KOG0515|consen 635 LVESGAA 641 (752)
T ss_pred HHhccce
Confidence 8888887
No 79
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.09 E-value=4.1e-07 Score=93.69 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=67.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccc-cccccceEEEEeccCCchHHHHHHHcCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~k-d~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
+|-+.|.-|||++. .++|++||..|||||.+ ++.+.||||.||-.|+.+++++|++.|+
T Consensus 44 sGMs~LahAaykGn--------------------l~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa 103 (396)
T KOG1710|consen 44 SGMSVLAHAAYKGN--------------------LTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGA 103 (396)
T ss_pred CcccHHHHHHhcCc--------------------HHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccC
Confidence 45566777777765 99999999999999998 7899999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecc
Q 008333 308 DGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApL 326 (570)
. +.++|.-|.|+-.+|..
T Consensus 104 ~-~~~vNsvgrTAaqmAAF 121 (396)
T KOG1710|consen 104 R-MYLVNSVGRTAAQMAAF 121 (396)
T ss_pred c-cccccchhhhHHHHHHH
Confidence 9 88999999988655543
No 80
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.06 E-value=7.8e-07 Score=86.23 Aligned_cols=82 Identities=11% Similarity=-0.012 Sum_probs=67.5
Q ss_pred hhHhhhcccCCc-ccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccccccccccccce
Q 008333 263 SKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCELADSSTLA 341 (570)
Q Consensus 263 ~~iVr~Ll~agA-~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~itr~~l~d~s~~~ 341 (570)
...||.||+-.| .||.+|..+.|+||-|+++||.+||..|++.||+ ..+.-..|.|+||-|.-=+..+| ..
T Consensus 76 l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~v-------a~ 147 (228)
T KOG0512|consen 76 LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFEV-------AG 147 (228)
T ss_pred HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchhH-------HH
Confidence 788999988888 7999999999999999999999999999999999 88999999999999855544433 22
Q ss_pred eeccCcCCchh
Q 008333 342 FWSKSSVDIEP 352 (570)
Q Consensus 342 f~sks~vd~e~ 352 (570)
++...+.|+.+
T Consensus 148 ~LLqhgaDVnA 158 (228)
T KOG0512|consen 148 RLLQHGADVNA 158 (228)
T ss_pred HHHhccCcccc
Confidence 34455555544
No 81
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.03 E-value=2.8e-06 Score=101.68 Aligned_cols=51 Identities=35% Similarity=0.929 Sum_probs=41.6
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhhh
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (570)
...+|..|. +.++|+||||.||++||.+|... ..+.+|||+.|+..+..+.
T Consensus 4 s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~ 54 (1598)
T KOG0230|consen 4 SSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS--------PETSIRVCNECRGQWEQGN 54 (1598)
T ss_pred cccchhccc---cccccCCCCcccCceeccccCCC--------CccceeehhhhhhhccccC
Confidence 356788888 78899999999999999999821 2248999999999876554
No 82
>PHA02730 ankyrin-like protein; Provisional
Probab=97.98 E-value=1.3e-06 Score=99.68 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=58.3
Q ss_pred hHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCC-CCCceeeeecc
Q 008333 264 KIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPL 326 (570)
Q Consensus 264 ~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~-~gnn~LhIApL 326 (570)
+||+.||..||++|++|..|+||||+|+..++.++++.|+++||+ ++..|. .|.++||.|..
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd-IN~~d~~~g~TaL~~Aa~ 505 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS-VNTTSRSIINTAIQKSSY 505 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCcCCcCHHHHHHH
Confidence 579999999999999999999999999999999999999999999 999997 58999999864
No 83
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.96 E-value=2e-06 Score=98.44 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=62.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc--
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-- 305 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~-- 305 (570)
..|.|+||+|+..+. .+||+.||++||++|.+|..|+||||+|++.|+.+++++|+++
T Consensus 113 ~~G~TpLh~Aa~~g~--------------------~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~ 172 (664)
T PTZ00322 113 YDGRTPLHIACANGH--------------------VQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ 172 (664)
T ss_pred CCCCcHHHHHHHCCC--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCC
Confidence 467899999876554 9999999999999999999999999999999999999999998
Q ss_pred -----CCCCCcccCCCCCcee
Q 008333 306 -----GLDGIRMLDPNTSRTL 321 (570)
Q Consensus 306 -----Gadgv~~lD~~gnn~L 321 (570)
|++ .+..+..|.+++
T Consensus 173 ~~~~~ga~-~~~~~~~g~~~~ 192 (664)
T PTZ00322 173 CHFELGAN-AKPDSFTGKPPS 192 (664)
T ss_pred cccccCCC-CCccccCCCCcc
Confidence 777 666666665543
No 84
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.95 E-value=1.5e-06 Score=80.65 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=61.9
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCC-----chHHHHHHHcCC--CCCcccCCCCCceeeeecccc
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-----QSTMDVLCQIGL--DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~-----~~iv~vLlq~Ga--dgv~~lD~~gnn~LhIApLe~ 328 (570)
+..++++.|+..|++++.+|..|.|+||+|+..++ .++++.|++.|+ +-....|.+|+++||+|.+..
T Consensus 84 ~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~ 158 (235)
T COG0666 84 GDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNG 158 (235)
T ss_pred CcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcC
Confidence 45888999999999999999999999999999999 899999999999 536677999999999997764
No 85
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.94 E-value=8.1e-07 Score=98.38 Aligned_cols=65 Identities=32% Similarity=0.747 Sum_probs=55.7
Q ss_pred CCCcccCC----CCccccc-cCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 419 KDHWVPDE----AVSKCTA-CGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 419 ~~~Wvpd~----~~~~C~~-C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
..+|++|. .-..||. |+..|..++||||||.||+..|..|...+......++..+.++|+.|+.+
T Consensus 313 l~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psv 382 (1141)
T KOG1811|consen 313 LHNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSV 382 (1141)
T ss_pred hhhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccch
Confidence 46799987 3457885 57889999999999999999999999988877777778899999999964
No 86
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=97.94 E-value=3e-06 Score=100.73 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=73.3
Q ss_pred ccccccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHH
Q 008333 220 KLEPYGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTM 299 (570)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv 299 (570)
+.++=-.-+++.|+||.|+-.+- .++|++|++.||+|..+|..+.|+||+|+..|+.+|+
T Consensus 199 ~~~~~a~~~~~~tpl~~a~~~nr--------------------i~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~ 258 (1143)
T KOG4177|consen 199 KADPNASALNGFTPLHIACKKNR--------------------IKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIV 258 (1143)
T ss_pred cCCccccccCCCCchhhhccccc--------------------cceeeeeeeccCcCCcccccCccHHHHHHhccchhHH
Confidence 45666677889999999887775 7788888888888888888888888888888888888
Q ss_pred HHHHHcCCCCCcccCCCCCceeeeecccccccc
Q 008333 300 DVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (570)
Q Consensus 300 ~vLlq~Gadgv~~lD~~gnn~LhIApLe~itr~ 332 (570)
.+|++.|+. +++.+-.+.|+||++++...+++
T Consensus 259 ~~l~~~ga~-~~~~~vr~~tplh~AA~~~~~e~ 290 (1143)
T KOG4177|consen 259 KLLLQHGAS-VNVSTVRGETPLHMAARAGQVEV 290 (1143)
T ss_pred HHHHhcccc-cCcccccccCcchhhhccchhhh
Confidence 888888888 77888888888888877765543
No 87
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.92 E-value=1.5e-06 Score=73.64 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.++||+|++.+. .++|+.|++.|++++.++..|.|+||+|+..+..++++.|++.|++
T Consensus 6 ~g~t~l~~a~~~~~--------------------~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~ 65 (126)
T cd00204 6 DGRTPLHLAASNGH--------------------LEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65 (126)
T ss_pred CCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45688888887765 8999999999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCceeeeeccc
Q 008333 309 GIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe 327 (570)
++..|..+.+++|+|...
T Consensus 66 -~~~~~~~~~~~l~~a~~~ 83 (126)
T cd00204 66 -VNARDKDGNTPLHLAARN 83 (126)
T ss_pred -ccccCCCCCCHHHHHHHc
Confidence 778889999999887443
No 88
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.86 E-value=5.4e-06 Score=94.01 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=62.1
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
++..|+.+||++||++++.+|+.+..+.||||+||..||.+++.+||+.|+| .-+.|.++.|+|.+|..-
T Consensus 89 aaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qf 158 (854)
T KOG0507|consen 89 AAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRF 158 (854)
T ss_pred hhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHh
Confidence 5667789999999999999999999999999999999999999999999999 558899999988877543
No 89
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=97.84 E-value=4.8e-06 Score=86.51 Aligned_cols=64 Identities=22% Similarity=0.457 Sum_probs=50.0
Q ss_pred CCcccCCCCccccccCccccCccccccccccCceeccCCCc-ceE--Eecc---CCCCCceeeccccHHH
Q 008333 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTH-GRI--ALTA---DANAQPVRVCDRCMAE 483 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~-~~~--~Lp~---~~~~~pvRVC~~Cy~~ 483 (570)
..|+.+.++..|..|...|.++.|.|||+.||++||..|+. ... .+-. +-..+..+.|..|...
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 57888999999999999999999999999999999999987 211 1110 1123566888888875
No 90
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.84 E-value=2.7e-06 Score=72.10 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=69.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.++||.|+..+. .++++.|++.|+.++..+..++|++|+|++.++.++++.|++.|.
T Consensus 38 ~~g~~~l~~a~~~~~--------------------~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~ 97 (126)
T cd00204 38 NDGRTPLHLAAKNGH--------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97 (126)
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 356678888776665 799999999999999999999999999999999999999999998
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ +...|..+.++|+++...
T Consensus 98 ~-~~~~~~~~~~~l~~~~~~ 116 (126)
T cd00204 98 D-VNARDKDGRTPLHLAAKN 116 (126)
T ss_pred C-CcccCCCCCCHHHHHHhc
Confidence 8 888999999999887433
No 91
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.83 E-value=5.9e-06 Score=87.50 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=47.5
Q ss_pred ccccc-cccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 275 HQDVK-SGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 275 ~vn~k-d~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+||+| ..+|||+|.||+-.|..++|..||-.||| +++.|.+|.|+|.-|.-|.
T Consensus 331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHG 384 (452)
T KOG0514|consen 331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHG 384 (452)
T ss_pred CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhC
Confidence 46666 46999999999999999999999999999 9999999999998886663
No 92
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=97.79 E-value=5.8e-06 Score=85.42 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=60.8
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
++-|+-+||..||+..||||+.+.+|.||||+|.-=|...|++-|+.+||. +++.++.|.++|..+
T Consensus 75 aahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldka 140 (448)
T KOG0195|consen 75 AAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKA 140 (448)
T ss_pred hhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhh
Confidence 344569999999999999999999999999999999999999999999999 999999999988654
No 93
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.78 E-value=3.6e-06 Score=95.99 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=57.8
Q ss_pred chhHhhhcccCCcccccc---------cc--------------cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC
Q 008333 262 SSKIVRAVPKVDTHQDVK---------SG--------------VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS 318 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~k---------d~--------------~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gn 318 (570)
+.++|++||++||||+.+ |. -|..||-+||=-+..+|+++|++.||| +++.|.+||
T Consensus 196 ~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GN 274 (782)
T KOG3676|consen 196 DAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGN 274 (782)
T ss_pred cHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCC
Confidence 489999999999999953 11 245789999999999999999999999 999999999
Q ss_pred ceeeeecccc
Q 008333 319 RTLRIYPLEN 328 (570)
Q Consensus 319 n~LhIApLe~ 328 (570)
|.||+-+++.
T Consensus 275 TVLH~lVi~~ 284 (782)
T KOG3676|consen 275 TVLHMLVIHF 284 (782)
T ss_pred hHHHHHHHHH
Confidence 9999987774
No 94
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.68 E-value=1.9e-05 Score=89.71 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=64.7
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
++..|+..|+++|+.+.|-+++.|..+++||||||+.|+.+||.+|+..+ |++++..-.+.++||.++.|
T Consensus 56 a~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqh 125 (854)
T KOG0507|consen 56 AVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQH 125 (854)
T ss_pred HHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhh
Confidence 44556699999999999999999999999999999999999999999999 76999999999999999777
No 95
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.65 E-value=1e-05 Score=57.01 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.5
Q ss_pred cccceEEEEeccCCchHHHHHHHcCCCCCcccC
Q 008333 282 VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLD 314 (570)
Q Consensus 282 ~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD 314 (570)
+|+||||+|++.|+.+++++|++.|++ +++.|
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d 32 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGAD-INARD 32 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSC-TTCBC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCC-CCCCC
Confidence 489999999999999999999999999 77765
No 96
>PHA02792 ankyrin-like protein; Provisional
Probab=97.64 E-value=3.8e-05 Score=87.27 Aligned_cols=51 Identities=6% Similarity=0.027 Sum_probs=47.2
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEec-cCCchHHHHHHHcCCC
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAE-SGGQSTMDVLCQIGLD 308 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~-~g~~~iv~vLlq~Gad 308 (570)
...|+.+||+.|+++||+||.++..+.|+||+|+. +++.++++.|++.|||
T Consensus 80 s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad 131 (631)
T PHA02792 80 SDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIP 131 (631)
T ss_pred HhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCC
Confidence 36789999999999999999999999999999966 6999999999999987
No 97
>PF13606 Ank_3: Ankyrin repeat
Probab=97.58 E-value=1.3e-05 Score=56.10 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=26.9
Q ss_pred cccceEEEEeccCCchHHHHHHHcCCCCCc
Q 008333 282 VQKFRVKLLAESGGQSTMDVLCQIGLDGIR 311 (570)
Q Consensus 282 ~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~ 311 (570)
+|+|+||+|++.|+.++++.|+++|+| ++
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad-vn 29 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGAD-VN 29 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCC-CC
Confidence 489999999999999999999999999 54
No 98
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=97.56 E-value=7.3e-06 Score=63.47 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.7
Q ss_pred ccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 283 QKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 283 ~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|.|+||+|++.|+.++++.|++.|+| ++..|.+|.|+||+|....
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g 45 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNG 45 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcc
Confidence 57999999999999999999999999 9999999999999986554
No 99
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.46 E-value=1.5e-05 Score=91.78 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=64.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccC---------CchHH
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG---------GQSTM 299 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g---------~~~iv 299 (570)
.|.++||+|+.-+ +.++|++|++.||++|.+|..|+|+||+|+.++ ...+.
T Consensus 174 ~g~tpL~~Aa~~~--------------------~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~ 233 (743)
T TIGR00870 174 HGESPLNAAACLG--------------------SPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMY 233 (743)
T ss_pred ccccHHHHHHHhC--------------------CHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4567788766544 499999999999999999999999999999986 22356
Q ss_pred HHHHHcCCCC--C----cccCCCCCceeeeecccc
Q 008333 300 DVLCQIGLDG--I----RMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 300 ~vLlq~Gadg--v----~~lD~~gnn~LhIApLe~ 328 (570)
+.+++.|+++ . ++.|.+|.|+||+|..+.
T Consensus 234 ~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g 268 (743)
T TIGR00870 234 NFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG 268 (743)
T ss_pred HHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence 7777777663 2 467999999999998763
No 100
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=97.41 E-value=0.0028 Score=75.22 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 008333 29 YASAPPFS 36 (570)
Q Consensus 29 ~~s~pp~~ 36 (570)
|.|.|-|+
T Consensus 1446 ~~ssp~~s 1453 (1605)
T KOG0260|consen 1446 YSSSPGYS 1453 (1605)
T ss_pred CCCCCCCC
Confidence 44555554
No 101
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.34 E-value=0.00011 Score=84.43 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=67.6
Q ss_pred cccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCC
Q 008333 238 LFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPN 316 (570)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~ 316 (570)
..|+|||+.---+.+ .|-..++|.||.+|++++++|. .|+|+||=|.+.|+.+.+++|+..|+. +.+.|++
T Consensus 47 ikD~~GR~alH~~~S-------~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i~Dke 118 (1267)
T KOG0783|consen 47 IKDRYGRTALHIAVS-------ENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRIKDKE 118 (1267)
T ss_pred HHHhhccceeeeeec-------cchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEEeccc
Confidence 357788864333222 3347899999999999999997 899999999999999999999999999 9999999
Q ss_pred CCceeeeecc
Q 008333 317 TSRTLRIYPL 326 (570)
Q Consensus 317 gnn~LhIApL 326 (570)
|-.+|.+...
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9988876543
No 102
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=97.31 E-value=7.4e-05 Score=82.23 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=61.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENI 329 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~i 329 (570)
++..|-.++|+..+.--.|...-+-.|-|+||-|+-.||.+||+.|+++|++ +++.|.+|.|+||-|..-+.
T Consensus 557 aaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNn 628 (752)
T KOG0515|consen 557 AALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNN 628 (752)
T ss_pred hhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCc
Confidence 4556667777776666666666677899999999999999999999999999 99999999999999987753
No 103
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=97.23 E-value=6.7e-05 Score=52.81 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=29.0
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG 281 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~ 281 (570)
+|.|+||||+..+. .+||+.||+.||++|.+|.
T Consensus 1 dG~TpLh~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGH--------------------PDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTC--------------------HHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHH--------------------HHHHHHHHHCcCCCCCCCC
Confidence 47799999887775 9999999999999999874
No 104
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.19 E-value=9.6e-05 Score=81.45 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=64.7
Q ss_pred CCCccccccccCCcccCCCCcCCCCccCCCchhHhhh-cccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCC
Q 008333 232 KSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRA-VPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI 310 (570)
Q Consensus 232 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~-Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv 310 (570)
.+|||+.|.+- ...+.+. +.++.+.|+.+|..|.||||||+.-||...+.+|+.+||| +
T Consensus 22 ~~lh~~~~~~~-------------------~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad-v 81 (560)
T KOG0522|consen 22 KPLHWAVVTTD-------------------SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD-V 81 (560)
T ss_pred cccchhhhccc-------------------hhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC-c
Confidence 66999988753 1445553 4567778999999999999999999999999999999999 9
Q ss_pred cccCCCCCceeeeeccc
Q 008333 311 RMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 311 ~~lD~~gnn~LhIApLe 327 (570)
...|.+|.++||.|+.-
T Consensus 82 ~~kN~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 82 SIKNNEGWSPLHEAVST 98 (560)
T ss_pred cccccccccHHHHHHHc
Confidence 99999999999998654
No 105
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.17 E-value=0.00013 Score=85.05 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=83.6
Q ss_pred ccccCcCCCCCCCccccccccCCcccCCCCcC-----CCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCc
Q 008333 222 EPYGARGTVPKSSNSTLFDDYGRSISFPSAKD-----SRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ 296 (570)
Q Consensus 222 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~ 296 (570)
.=+=++..+.+.+-+|.-.-=|-.|.+.+.-. --.++.+|...++++||..||++|.+|..++||||.+...|+.
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 623 LLVKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred HHHHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhccc
Confidence 34455666666666655555555565543221 2267889999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008333 297 STMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 297 ~iv~vLlq~Gadgv~~lD~~gnn~LhIAp 325 (570)
.++.+|+++|++ ..+.|+++..+|+||.
T Consensus 703 ~~~~~ll~~~a~-~~a~~~~~~~~l~~a~ 730 (785)
T KOG0521|consen 703 SIACLLLKRGAD-PNAFDPDGKLPLDIAM 730 (785)
T ss_pred chhhhhcccccc-ccccCccCcchhhHHh
Confidence 999999999999 8899999999999973
No 106
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.0024 Score=73.24 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
+++|--.+|..+-+|-..+..++--.|+- -.+..+.|-+..+.
T Consensus 715 yeeik~~ILevne~vLse~~iqnLik~lP----e~E~l~~L~e~Kae 757 (1102)
T KOG1924|consen 715 YEEIKNVILEVNEDVLSESMIQNLIKHLP----EQEQLNKLSELKAE 757 (1102)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHh
Confidence 45555555665555555555555444443 12444445444433
No 107
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.13 E-value=0.0024 Score=73.31 Aligned_cols=10 Identities=10% Similarity=0.308 Sum_probs=5.2
Q ss_pred cccccccCce
Q 008333 444 KHHCRNCGDI 453 (570)
Q Consensus 444 KHHCR~CG~v 453 (570)
-|||-+-.+|
T Consensus 885 l~hv~kaSrv 894 (1102)
T KOG1924|consen 885 LEHVEKASRV 894 (1102)
T ss_pred HHHHHhhccc
Confidence 4555555444
No 108
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=97.06 E-value=0.00054 Score=74.27 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=33.5
Q ss_pred CCCcccccccccCcccccccccccCCCCCccccCCCCCccccccC
Q 008333 526 DGSGRRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 526 d~s~~~~k~~~~pt~wv~l~v~Vp~~Dsev~~C~iC~q~F~~~~r 570 (570)
..+..+.+.+..+|.| .||++|..|+.|.+.|++++|
T Consensus 159 ~d~~k~k~~EqsvVpW--------~DDs~V~~CP~Ca~~F~l~rR 195 (505)
T KOG1842|consen 159 KDSVKRKRLEQSVVPW--------LDDSSVQFCPECANSFGLTRR 195 (505)
T ss_pred cchHHHHHHHhccccc--------cCCCcccccccccchhhhHHH
Confidence 4567788899999999 899999999999999999876
No 109
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=97.00 E-value=0.00028 Score=82.98 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=66.6
Q ss_pred CccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCccc-CCCCCceeeeecccccc
Q 008333 256 SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRML-DPNTSRTLRIYPLENIT 330 (570)
Q Consensus 256 ~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~l-D~~gnn~LhIApLe~it 330 (570)
...++|+.++|++||..||.+-.+|..|.++|.||+..||.++|++|+++-|+ +.+. |..+.|.|-|+.-...+
T Consensus 763 ~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~ 837 (2131)
T KOG4369|consen 763 SACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRT 837 (2131)
T ss_pred ccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcc
Confidence 46788999999999999999999999999999999999999999999999999 7654 88889999998776543
No 110
>PF13606 Ank_3: Ankyrin repeat
Probab=96.94 E-value=0.00022 Score=49.87 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=26.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccc
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDV 278 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~ 278 (570)
.|.|+||+|+..+. .+||+.||++||++|.
T Consensus 1 ~G~T~Lh~A~~~g~--------------------~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGN--------------------IEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCC--------------------HHHHHHHHHcCCCCCC
Confidence 47899999887665 9999999999999984
No 111
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=96.89 E-value=0.00022 Score=63.36 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=62.1
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRC 332 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~itr~ 332 (570)
.+++|..+-|+-....|-+||..= .+.||||+||.-|..+|.+.|+.+||+ ++..|+.|-|+|--|.-|.-++|
T Consensus 9 ~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~c 82 (117)
T KOG4214|consen 9 NVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRDC 82 (117)
T ss_pred hhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHHH
Confidence 456777888998888897787544 789999999999999999999999999 99999999888877766654444
No 112
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=96.82 E-value=0.00032 Score=76.91 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=63.8
Q ss_pred CccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008333 256 SSVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 256 ~~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApL 326 (570)
++|.+|+.++---||.-||++|+-+- .|.||||+||+.|...-+++|.-.||| +.+.|.+|-+++.+|.-
T Consensus 139 asvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~GmtP~~~AR~ 209 (669)
T KOG0818|consen 139 SSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSGMTPVDYARQ 209 (669)
T ss_pred HHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCCCcHHHHHHh
Confidence 57899999999999999999999875 789999999999988889999999999 88999999999877644
No 113
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.51 E-value=0.00039 Score=79.85 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=60.4
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCC-cccCCCCCceeeeecccc
Q 008333 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI-RMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv-~~lD~~gnn~LhIApLe~ 328 (570)
.++++|||+|+..|||+|++|..|+|-||+++....-++.+++++.|++-. .+.|.+|-|+|.+|....
T Consensus 250 ~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG 319 (782)
T KOG3676|consen 250 TNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG 319 (782)
T ss_pred cCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence 445999999999999999999999999999999876788999999998822 367999999999987663
No 114
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.48 E-value=0.00059 Score=76.00 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=57.5
Q ss_pred ccCCCchhHhhhcccCCccc--c--cccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQ--D--VKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~v--n--~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApL 326 (570)
+++..+...+-+||.+|.++ | ..+..|.|+||||+++|++.+..+|+=.|+| +.+.|.+|+++|..|..
T Consensus 631 A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~ 703 (749)
T KOG0705|consen 631 AVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQ 703 (749)
T ss_pred HHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhh
Confidence 45555677777888888854 3 3366889999999999999999999999999 98999999999987633
No 115
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=96.29 E-value=0.0037 Score=56.93 Aligned_cols=51 Identities=25% Similarity=0.707 Sum_probs=40.9
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~-~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
...|..|++.|+++ ++.+-|..|++-||.+|... ......-+|..|.+...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~re 105 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQRE 105 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHHH
Confidence 45899999999977 68999999999999999865 23467889999998543
No 116
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.96 E-value=0.0027 Score=70.91 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=57.1
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
-|.|-|+||.|+.++. ..+..+||=.|+||-++|.+|.|+|-+|-+.|.++.+++|+|.|
T Consensus 658 ~~~grt~LHLa~~~gn--------------------Vvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~g 717 (749)
T KOG0705|consen 658 EGDGRTALHLAARKGN--------------------VVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYG 717 (749)
T ss_pred CCCCcchhhhhhhhcc--------------------hhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcC
Confidence 3567899999887765 89999999999999999999999999999999999999999999
Q ss_pred CC
Q 008333 307 LD 308 (570)
Q Consensus 307 ad 308 (570)
.-
T Consensus 718 cp 719 (749)
T KOG0705|consen 718 CP 719 (749)
T ss_pred CC
Confidence 76
No 117
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.92 E-value=0.0036 Score=76.11 Aligned_cols=34 Identities=50% Similarity=1.310 Sum_probs=32.9
Q ss_pred ccCCCCccccccCccccCccccccccccCceeccCC
Q 008333 423 VPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 423 vpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
++|...++|..|+.+|+-++|+||| ||.|||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence 7888899999999999999999999 999999999
No 118
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.62 E-value=0.23 Score=55.23 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=3.7
Q ss_pred cCCCCCCCC
Q 008333 12 QYPNPNPNP 20 (570)
Q Consensus 12 ~~~~p~p~p 20 (570)
|+.-|.|.|
T Consensus 316 q~~~P~PPP 324 (569)
T KOG3671|consen 316 QKKRPPPPP 324 (569)
T ss_pred ccCCCCCcC
Confidence 444443333
No 119
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=95.59 E-value=0.0076 Score=71.60 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=44.8
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.|.-||.+.|+.||..+|-|.+++..|.|+|-||+..|+...|.+|++.++| ++..|..+++.+..+..+
T Consensus 1001 ~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad-~d~qdnr~~S~~maafRK 1070 (2131)
T KOG4369|consen 1001 PANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD-ADQQDNRTNSRTMAAFRK 1070 (2131)
T ss_pred ecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccC-hhhhhcccccccHHHHHh
Confidence 4555666666666666666666666666666666666666666666666666 666666665555444333
No 120
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=95.46 E-value=0.01 Score=65.27 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=59.1
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeee
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq-~Gadgv~~lD~~gnn~LhIA 324 (570)
++.+|+...+|.+.+.|.|.+.+|-.-.|+||+||.+|+.+++..|++ .++| .+..|.=|+++|.-|
T Consensus 513 aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-~~~kDRw~rtPlDdA 580 (622)
T KOG0506|consen 513 AAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-PDPKDRWGRTPLDDA 580 (622)
T ss_pred hhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCC-CChhhccCCCcchHh
Confidence 466788999999999999999999999999999999999999999998 4677 778888888887544
No 121
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=95.33 E-value=0.0037 Score=65.18 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=62.8
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccc--cccccccc
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENIT--RCELADSS 338 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~it--r~~l~d~s 338 (570)
|+..-...||+---.||.+|-.|-+.|--||++|+.++|++|++.|+|=..-.+..++|+||+|.|-..+ -|++.|+.
T Consensus 23 ndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG 102 (396)
T KOG1710|consen 23 NDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG 102 (396)
T ss_pred CcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhcc
Confidence 4566667777765569999999999999999999999999999999993346688999999999998543 23444444
Q ss_pred c
Q 008333 339 T 339 (570)
Q Consensus 339 ~ 339 (570)
+
T Consensus 103 a 103 (396)
T KOG1710|consen 103 A 103 (396)
T ss_pred C
Confidence 3
No 122
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=95.07 E-value=0.007 Score=66.76 Aligned_cols=60 Identities=7% Similarity=-0.013 Sum_probs=52.3
Q ss_pred CcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc
Q 008333 226 ARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (570)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~ 305 (570)
--++|.|+||.||.-+ ...-|++|+..|||++..|..|.||+.+|-..||.++.+-|+++
T Consensus 163 hpekg~TpLHvAAk~G--------------------q~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 163 HPEKGNTPLHVAAKAG--------------------QILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred CcccCCchhHHHHhcc--------------------chhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 3468899999976544 48889999999999999999999999999999999888777764
No 123
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.71 E-value=0.012 Score=68.25 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=45.8
Q ss_pred cccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCC-CCCceeeeecc
Q 008333 276 QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDP-NTSRTLRIYPL 326 (570)
Q Consensus 276 vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~-~gnn~LhIApL 326 (570)
.|++|..|.|+|||++-.+..++++-|+|+|+| +.+.|. .|.++||.|--
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiy 95 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIY 95 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhh
Confidence 789999999999999999999999999999999 888886 79999998743
No 124
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=94.69 E-value=0.83 Score=51.00 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=2.9
Q ss_pred cCCCCCC
Q 008333 12 QYPNPNP 18 (570)
Q Consensus 12 ~~~~p~p 18 (570)
||++..+
T Consensus 298 k~~~~~~ 304 (569)
T KOG3671|consen 298 KNPNGLP 304 (569)
T ss_pred cCCCCCc
Confidence 4444433
No 125
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.68 E-value=0.0081 Score=64.56 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=49.4
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
+...|+.+.||.|+.-|+.||.+|.--..||-+|+--||..+|.+|+|+||=
T Consensus 43 acR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi 94 (516)
T KOG0511|consen 43 ACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI 94 (516)
T ss_pred HhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 5678999999999999999999999999999999999999999999999975
No 126
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=94.38 E-value=0.018 Score=68.13 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=48.7
Q ss_pred CCCchhHhhhc-ccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCc
Q 008333 259 GSGSSKIVRAV-PKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSR 319 (570)
Q Consensus 259 ~~g~~~iVr~L-l~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn 319 (570)
+.++.+++.+| +-+|..++++|..|+||||||+..|+..++..|++.|++.--++|+.-.+
T Consensus 616 a~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~ 677 (975)
T KOG0520|consen 616 AALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPET 677 (975)
T ss_pred hhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCC
Confidence 44444555554 46778899999999999999999999999999999998855677775544
No 127
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=94.10 E-value=0.0078 Score=67.23 Aligned_cols=67 Identities=13% Similarity=0.171 Sum_probs=55.3
Q ss_pred ccCCCchhHhhhcccCCc--ccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 257 SVGSGSSKIVRAVPKVDT--HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA--~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
+|.+|+.+|||.||.+|- ..+..|..|.|.||-||-.++..++.+|++.||. +.-.|..|.|+...|
T Consensus 906 a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~era 974 (1004)
T KOG0782|consen 906 AAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQERA 974 (1004)
T ss_pred HHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh-heecccCCCChHHHH
Confidence 566778999999998887 3455678899999999988888999999999998 888899998876443
No 128
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=93.60 E-value=0.015 Score=57.61 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=47.5
Q ss_pred CcccccccccccceEEEEeccCCchHHHHHHHcC-CCCCcccCCCCCceeeee
Q 008333 273 DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG-LDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 273 gA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G-adgv~~lD~~gnn~LhIA 324 (570)
+.++|++|..++|+|.+||..|.-+.|..|++.| ++ +.+.|.++..++.||
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~-vgv~d~ssldaaqla 53 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF-VGVTDESSLDAAQLA 53 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc-ccccccccchHHHHH
Confidence 5689999999999999999999999999999999 66 999999999998887
No 129
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=92.75 E-value=0.048 Score=65.14 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=47.6
Q ss_pred CCCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 417 ~~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
+.+..|++|..+..|+.|.+.|.++.+||||| |+++ +. ..+.+..|+|..|.+.+.+
T Consensus 646 e~ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~-~~s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 646 EVKSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LL-YSSRKEARPCNITHSVLRN 702 (1287)
T ss_pred eecceeccCCcCCCceecccceeeeccccccc--cccc----------cc-ccccccCCCCcccCccchh
Confidence 56889999999999999999999999999999 8887 11 1234667999999987655
No 130
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.44 E-value=0.034 Score=61.97 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=45.2
Q ss_pred CCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008333 231 PKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (570)
Q Consensus 231 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLl 303 (570)
.|+||.|.+- |+..-++.||.|||++-++|+.|+++||-|+-.|+..|+..++
T Consensus 56 ~TpLhlAV~L--------------------g~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vl 108 (560)
T KOG0522|consen 56 RTPLHLAVRL--------------------GHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVL 108 (560)
T ss_pred CccHHHHHHh--------------------cCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHH
Confidence 7899996654 4599999999999999999999999999999998876654443
No 131
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=92.39 E-value=0.033 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.7
Q ss_pred ccceEEEEeccCCchHHHHHHHcCCC
Q 008333 283 QKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 283 ~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
++|+||++++.++.++++.|++.|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 68899999999999999999999886
No 132
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=92.26 E-value=0.051 Score=63.95 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=51.1
Q ss_pred ccCCcccccc--cccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccccc
Q 008333 270 PKVDTHQDVK--SGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENIT 330 (570)
Q Consensus 270 l~agA~vn~k--d~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~it 330 (570)
+.+|+++|.. -..|.|.||+|...+...+++.|+++|++ +++.|..|+++||++..+..+
T Consensus 641 ~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~ 702 (785)
T KOG0521|consen 641 LAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHT 702 (785)
T ss_pred hcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhccc
Confidence 3556666653 34779999999999999999999999999 999999999999999888654
No 133
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=91.63 E-value=6.3 Score=43.59 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 008333 85 SLSSFNPIPPQQFPPYDS 102 (570)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~ 102 (570)
.+-.++|+.+++..||.-
T Consensus 345 sp~~pppp~pp~~~p~~~ 362 (518)
T KOG1830|consen 345 SPIVPPPPSPPSTIPFVE 362 (518)
T ss_pred CCCCCCCCCCCCCCCCcc
Confidence 334444444445555443
No 134
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=89.57 E-value=0.11 Score=51.71 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=52.5
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC-cccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag-A~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
|||+||+||-.+. .+.|..|+.+| |.|-+.|..+.+++.||-+.|+...|..|-++--+
T Consensus 12 gWTalmcaa~eg~--------------------~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 12 GWTALMCAAMEGS--------------------NEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred cchHHHHHhhhcc--------------------hhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 6899999776554 88999999999 89999999999999999999999999999988544
No 135
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=0.017 Score=62.51 Aligned_cols=65 Identities=23% Similarity=0.593 Sum_probs=54.0
Q ss_pred CCcccCCCCccccccCccccCccccccccc--cCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 420 DHWVPDEAVSKCTACGTDFSAFVRKHHCRN--CGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~--CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
-.|.=+.++..|..|-.+|..+.-+-||-+ |++|||-.|++-. ++..-+..+..||+.|.+.+..
T Consensus 460 le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Kat--vp~l~~e~~akv~rlq~eL~~s 526 (542)
T KOG0993|consen 460 LEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKAT--VPSLPNERPAKVCRLQHELLNS 526 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHhh--cccccccchHHHHHHHHHHhhh
Confidence 457767778999999999999988899988 9999999998755 4555567889999999987653
No 136
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.31 E-value=0.2 Score=57.40 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=30.1
Q ss_pred cccccCccccCccccccccccC-ceeccCCCcceEE
Q 008333 430 KCTACGTDFSAFVRKHHCRNCG-DIFCDKCTHGRIA 464 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG-~vfC~~CS~~~~~ 464 (570)
.|..|-..|++..+.|+|++|| .|+|.-|+.-++-
T Consensus 56 h~np~~~~~~~~~~d~cvkn~G~gv~~ei~tre~m~ 91 (634)
T KOG1818|consen 56 HENPNVQLFTLKLTDHCVKNCGHGVHCEIATREFMD 91 (634)
T ss_pred ccCCCcccchhhhHHHHHhcCCcchhHHHHHHHHHH
Confidence 7889999999999999999999 7888888765543
No 137
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=83.84 E-value=0.39 Score=53.59 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=51.9
Q ss_pred hhHhhhcccCCccccc------ccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008333 263 SKIVRAVPKVDTHQDV------KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~------kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIAp 325 (570)
.+.|+.|.+.++..|+ ++.+--|+||+||..|....|..||++|+| .-+.|..|.|+--++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence 4456677778888874 455678999999999999999999999999 8899999999977764
No 138
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=83.31 E-value=0.69 Score=34.55 Aligned_cols=27 Identities=30% Similarity=0.929 Sum_probs=20.9
Q ss_pred ccccCccccCccccccccccCceeccCCC
Q 008333 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCT 459 (570)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS 459 (570)
|..|++.-.++ -..|+.||++||.++-
T Consensus 1 C~~C~~~~~l~--~f~C~~C~~~FC~~HR 27 (39)
T smart00154 1 CHFCRKKVGLT--GFKCRHCGNLFCGEHR 27 (39)
T ss_pred CcccCCccccc--CeECCccCCccccccC
Confidence 66788765554 5789999999998863
No 139
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.21 E-value=1.2 Score=40.86 Aligned_cols=54 Identities=19% Similarity=0.471 Sum_probs=37.4
Q ss_pred CCcccCCCCccccccCccccCc----------cccccccccCceeccCCCcceEEeccCCCCCceeeccccH
Q 008333 420 DHWVPDEAVSKCTACGTDFSAF----------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~----------~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy 481 (570)
..|........|..|++.|... ..+.-|..|..+||.+|=.+. .+.+..|-.|.
T Consensus 47 v~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fi--------He~Lh~CPGC~ 110 (112)
T TIGR00622 47 IPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFV--------HESLHCCPGCI 110 (112)
T ss_pred ccccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhh--------hhhccCCcCCC
Confidence 3565444456799999999742 346779999999999995432 23455666664
No 140
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=83.01 E-value=0.3 Score=49.07 Aligned_cols=62 Identities=31% Similarity=0.656 Sum_probs=36.8
Q ss_pred cCCCCccccccCccccC---c---------cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 424 PDEAVSKCTACGTDFSA---F---------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 424 pd~~~~~C~~C~~~Fsl---~---------~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
.|...-.|..|++.|++ + .|||-|+.||+.|=+.---++-. ....+.++ --|..|-+.+++|
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~-rthtgvrp-ykc~~c~kaftqr 186 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHT-RTHTGVRP-YKCSLCEKAFTQR 186 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhh-ccccCccc-cchhhhhHHHHhh
Confidence 34557789999999985 2 25788999999885543221111 11111122 3477787766655
No 141
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.37 E-value=0.48 Score=51.94 Aligned_cols=46 Identities=26% Similarity=0.577 Sum_probs=30.9
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
....|.+|...|..- ---.||+.||..|....+. . ...|-.|...+
T Consensus 25 ~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~-----~---~~~CP~Cr~~~ 70 (397)
T TIGR00599 25 TSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLS-----N---QPKCPLCRAED 70 (397)
T ss_pred cccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHh-----C---CCCCCCCCCcc
Confidence 356899998877532 2358999999999875431 1 23577776543
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.36 E-value=44 Score=41.02 Aligned_cols=9 Identities=56% Similarity=0.855 Sum_probs=4.4
Q ss_pred cCCCCCcee
Q 008333 313 LDPNTSRTL 321 (570)
Q Consensus 313 lD~~gnn~L 321 (570)
.|+...|.|
T Consensus 966 ~~~~~krkl 974 (1049)
T KOG0307|consen 966 TDPQTKRKL 974 (1049)
T ss_pred CCHHHHHHH
Confidence 455554444
No 143
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=79.83 E-value=0.94 Score=54.30 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCCCCceEEe-eCC----ccccccCcC--------CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC
Q 008333 207 DGYGDGVYAY-EGG----KLEPYGARG--------TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD 273 (570)
Q Consensus 207 ~~~~~~~~~~-~~~----~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag 273 (570)
|.-|.||+-+ -++ .+.||.+-| .|+|+||||||.+. +++|..|+..|
T Consensus 605 d~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~--------------------e~l~a~l~~lg 664 (975)
T KOG0520|consen 605 DRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGR--------------------EKLVASLIELG 664 (975)
T ss_pred cccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCH--------------------HHHHHHHHHhc
Confidence 3345566655 222 345665544 57999999998775 99999999888
Q ss_pred cccccc-c-----ccccceEEEEeccCCchHHHHHHHc
Q 008333 274 THQDVK-S-----GVQKFRVKLLAESGGQSTMDVLCQI 305 (570)
Q Consensus 274 A~vn~k-d-----~~~kTpLHlAa~~g~~~iv~vLlq~ 305 (570)
|+-++. | ..|+|+-.+|..+|+..|...|-+.
T Consensus 665 a~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 665 ADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred cccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 877653 2 3567777888888888877666653
No 144
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=78.60 E-value=1.2 Score=32.66 Aligned_cols=25 Identities=32% Similarity=0.891 Sum_probs=20.0
Q ss_pred cccccCccccCc-------cccccccccCcee
Q 008333 430 KCTACGTDFSAF-------VRKHHCRNCGDIF 454 (570)
Q Consensus 430 ~C~~C~~~Fsl~-------~RKHHCR~CG~vf 454 (570)
.|..|+++|.+- .++.-|.+||++|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 699999999763 4677899998876
No 145
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=78.13 E-value=0.56 Score=37.28 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=25.7
Q ss_pred cccccCccccCc------cccccccccCceeccCCCcceEEeccCCCCCceeeccccH
Q 008333 430 KCTACGTDFSAF------VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCM 481 (570)
Q Consensus 430 ~C~~C~~~Fsl~------~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy 481 (570)
.|..|.+.|... ..+..|..|+.+||..|=.+ .++.+..|-.|.
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f--------iHE~LH~CPGC~ 50 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF--------IHETLHNCPGCE 50 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHHHT--------TTTTS-SSSTT-
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcChh--------hhccccCCcCCC
Confidence 488999999875 36799999999999999432 245566676663
No 146
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=77.32 E-value=1.2 Score=42.87 Aligned_cols=25 Identities=36% Similarity=0.907 Sum_probs=19.5
Q ss_pred cccccCcccc------------CccccccccccCcee
Q 008333 430 KCTACGTDFS------------AFVRKHHCRNCGDIF 454 (570)
Q Consensus 430 ~C~~C~~~Fs------------l~~RKHHCR~CG~vf 454 (570)
.|..|+..++ ..+|+++|..||+.|
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 6888887762 345679999999987
No 147
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=76.94 E-value=1.1 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.0
Q ss_pred CCCCCccccCCCCCccccccC
Q 008333 550 SSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 550 ~~Dsev~~C~iC~q~F~~~~r 570 (570)
++|+++..|.+|++.|+++.|
T Consensus 4 ~~d~~~~~C~~C~~~F~~~~r 24 (69)
T PF01363_consen 4 VPDSEASNCMICGKKFSLFRR 24 (69)
T ss_dssp SSGGG-SB-TTT--B-BSSS-
T ss_pred CCCCCCCcCcCcCCcCCCcee
Confidence 559999999999999998765
No 148
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=75.61 E-value=0.61 Score=49.01 Aligned_cols=30 Identities=30% Similarity=0.916 Sum_probs=22.6
Q ss_pred CccccccCccccCccccccc-cccCceeccCCCcce
Q 008333 428 VSKCTACGTDFSAFVRKHHC-RNCGDIFCDKCTHGR 462 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHC-R~CG~vfC~~CS~~~ 462 (570)
...|.+|...|.. -| -.||+.||..|....
T Consensus 25 ~lrC~IC~~~i~i-----p~~TtCgHtFCslCIR~h 55 (391)
T COG5432 25 MLRCRICDCRISI-----PCETTCGHTFCSLCIRRH 55 (391)
T ss_pred HHHhhhhhheeec-----ceecccccchhHHHHHHH
Confidence 5689999887753 22 379999999997643
No 149
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=74.76 E-value=1.8 Score=31.81 Aligned_cols=26 Identities=38% Similarity=0.879 Sum_probs=20.4
Q ss_pred ccccccCccccCc-------cccccccccCcee
Q 008333 429 SKCTACGTDFSAF-------VRKHHCRNCGDIF 454 (570)
Q Consensus 429 ~~C~~C~~~Fsl~-------~RKHHCR~CG~vf 454 (570)
..|..|++.|.+- .++..|-+||.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 3799999999763 4578888888876
No 150
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.72 E-value=39 Score=40.45 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=11.4
Q ss_pred CCCCceeeccccHHH
Q 008333 469 ANAQPVRVCDRCMAE 483 (570)
Q Consensus 469 ~~~~pvRVC~~Cy~~ 483 (570)
.+.+.+||=..|.-+
T Consensus 603 ~GERRIRV~T~~lpt 617 (887)
T KOG1985|consen 603 KGERRIRVHTLCLPT 617 (887)
T ss_pred CCceeEEEEEeeccc
Confidence 346788999999864
No 151
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=72.58 E-value=2.2 Score=39.91 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=21.1
Q ss_pred ccccccCccccCcc-ccccccccCcee
Q 008333 429 SKCTACGTDFSAFV-RKHHCRNCGDIF 454 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~-RKHHCR~CG~vf 454 (570)
..|..|+++|=-++ +-.+|-+||..|
T Consensus 10 r~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 10 RICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred ccCCCcCccccccCCCCccCCCcCCcc
Confidence 48999999997554 467899999876
No 152
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.81 E-value=2.5 Score=38.46 Aligned_cols=26 Identities=31% Similarity=0.887 Sum_probs=21.2
Q ss_pred ccccccCccccCcccc-ccccccCcee
Q 008333 429 SKCTACGTDFSAFVRK-HHCRNCGDIF 454 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RK-HHCR~CG~vf 454 (570)
..|..|+++|=-++|. .+|-+||..|
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCcc
Confidence 4899999999877664 4599999887
No 153
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.60 E-value=0.64 Score=45.76 Aligned_cols=48 Identities=25% Similarity=0.670 Sum_probs=32.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
.-.|.+|-..|+-. -----+||+|||..|.+.-+ +..++|-.|.+.+.
T Consensus 131 ~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~al--------k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 131 TYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDAL--------KNTNKCPTCRKKIT 178 (187)
T ss_pred ccCCCceecchhhc--cccccccchhHHHHHHHHHH--------HhCCCCCCcccccc
Confidence 45677776655422 11446899999999986443 34588999987554
No 154
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=71.57 E-value=1.9 Score=42.03 Aligned_cols=28 Identities=29% Similarity=0.818 Sum_probs=24.0
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|..|+++-+++. .||| ||.+||..+
T Consensus 105 ~~rC~~C~kk~gltg--f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLTG--FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhcccc--cccc-cCCcccccc
Confidence 456999999888877 8997 999999887
No 155
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=71.39 E-value=18 Score=42.78 Aligned_cols=11 Identities=45% Similarity=0.181 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q 008333 24 LQPRSYASAPP 34 (570)
Q Consensus 24 ~~~~~~~s~pp 34 (570)
+..-+.|||=+
T Consensus 263 la~gs~asA~~ 273 (830)
T KOG1923|consen 263 LALGSLASACD 273 (830)
T ss_pred hhhhhhhhhcc
Confidence 33334455544
No 156
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=69.77 E-value=1.8 Score=48.28 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=41.0
Q ss_pred ccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 257 SVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
+|+-|++++|+.|| ..+.+.+.+|.-++|||--|.+-+|.+++.+|-+.-
T Consensus 546 AAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 546 AAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred ecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence 34445599999998 568899999999999999999999988777666643
No 157
>PHA02768 hypothetical protein; Provisional
Probab=69.06 E-value=2 Score=34.69 Aligned_cols=25 Identities=36% Similarity=0.741 Sum_probs=18.2
Q ss_pred cccccCccccCc------cccc----cccccCcee
Q 008333 430 KCTACGTDFSAF------VRKH----HCRNCGDIF 454 (570)
Q Consensus 430 ~C~~C~~~Fsl~------~RKH----HCR~CG~vf 454 (570)
.|..|++.|+.. .|+| .|-.||++|
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred CcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 799999999752 3444 477788776
No 158
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.64 E-value=0.79 Score=48.24 Aligned_cols=49 Identities=29% Similarity=0.792 Sum_probs=40.8
Q ss_pred CCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
.+..+|..|+..|..+.|||-|--|-+-||.-||... .-.|.|..|...
T Consensus 42 ~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v~---------~~lr~c~~c~r~ 90 (350)
T KOG4275|consen 42 SQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRVS---------ISLRTCTSCRRV 90 (350)
T ss_pred cccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHhc---------ccchhhhHHHHH
Confidence 3456899999999999999999999999999999432 246888888753
No 159
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=66.82 E-value=2.5 Score=39.97 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=18.8
Q ss_pred ccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 445 HHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 445 HHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
.+|+.||++|=. .-..+|..|++....
T Consensus 4 ~nC~~CgklF~~---------------~~~~iCp~C~~~~e~ 30 (137)
T TIGR03826 4 ANCPKCGRLFVK---------------TGRDVCPSCYEEEER 30 (137)
T ss_pred ccccccchhhhh---------------cCCccCHHHhHHHHH
Confidence 589999999811 123589999986543
No 160
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF14634 zf-RING_5: zinc-RING finger domain
Probab=64.08 E-value=1.8 Score=32.53 Aligned_cols=33 Identities=33% Similarity=0.792 Sum_probs=23.5
Q ss_pred cccccCccccCccccccccccCceeccCCCcceE
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
+|..|.+.|+ -.++-.=-.||.+||..|.....
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhc
Confidence 4788888882 23334445899999999987654
No 162
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.90 E-value=0.82 Score=53.21 Aligned_cols=47 Identities=30% Similarity=0.817 Sum_probs=33.4
Q ss_pred CCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
+..-.|..|..++.-. -=-+||++||..|...+. ....|-|-.|-.-
T Consensus 641 K~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~-------etRqRKCP~Cn~a 687 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRY-------ETRQRKCPKCNAA 687 (698)
T ss_pred HhceeCCCccCchhhH----HHHhcchHHHHHHHHHHH-------HHhcCCCCCCCCC
Confidence 3456899998766421 114799999999988664 3567889999653
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=63.73 E-value=1.5e+02 Score=32.48 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=6.2
Q ss_pred CCchHHHHHHH
Q 008333 294 GGQSTMDVLCQ 304 (570)
Q Consensus 294 g~~~iv~vLlq 304 (570)
++.+-|+||+.
T Consensus 409 ~~DdRCrvLis 419 (498)
T KOG4849|consen 409 GHDDRCRVLIS 419 (498)
T ss_pred ccchHHHHHHH
Confidence 44455666665
No 164
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.32 E-value=2.4 Score=47.63 Aligned_cols=52 Identities=29% Similarity=0.540 Sum_probs=37.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
-..|.+|-..+.+-.|- .||+|||..|.-..+... ..+.-+-|-.|+..+.-
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s---~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYS---AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhh---cccCCccCCchhhhccc
Confidence 35899998777665543 399999999987665443 24556889999986543
No 165
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=60.39 E-value=6.8 Score=30.65 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=20.2
Q ss_pred Cccccc--cCccccCccc----cccccccCceeccCCCc
Q 008333 428 VSKCTA--CGTDFSAFVR----KHHCRNCGDIFCDKCTH 460 (570)
Q Consensus 428 ~~~C~~--C~~~Fsl~~R----KHHCR~CG~vfC~~CS~ 460 (570)
...|.. |+..|..... ...|..||..||..|..
T Consensus 18 ~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~ 56 (64)
T PF01485_consen 18 IRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGE 56 (64)
T ss_dssp CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTS
T ss_pred ccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCc
Confidence 347765 8887765433 26899999999999975
No 166
>PF12773 DZR: Double zinc ribbon
Probab=59.28 E-value=6.3 Score=30.11 Aligned_cols=27 Identities=33% Similarity=0.678 Sum_probs=19.3
Q ss_pred CCccccccCcccc-CccccccccccCce
Q 008333 427 AVSKCTACGTDFS-AFVRKHHCRNCGDI 453 (570)
Q Consensus 427 ~~~~C~~C~~~Fs-l~~RKHHCR~CG~v 453 (570)
+...|..|+..+. .......|..||..
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~~ 38 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGAE 38 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcCC
Confidence 4678999988876 23446678888774
No 167
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=58.93 E-value=9.1 Score=40.86 Aligned_cols=59 Identities=24% Similarity=0.544 Sum_probs=37.1
Q ss_pred CccccccCcc--ccC-------ccccccccccC------ceeccCCCcce-EE---eccCCCCCceeeccccHHHHHh
Q 008333 428 VSKCTACGTD--FSA-------FVRKHHCRNCG------DIFCDKCTHGR-IA---LTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 428 ~~~C~~C~~~--Fsl-------~~RKHHCR~CG------~vfC~~CS~~~-~~---Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
...|..|+.. .++ ..|.-||-.|+ |+-|..|-..+ +. +........+-+|+.|..-++.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~ 264 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKI 264 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCceeeeeecCCCcceEeeeccccccccee
Confidence 5689999865 232 24777999997 56788887642 11 1111123456899999875543
No 168
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.66 E-value=4.8 Score=47.71 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=27.3
Q ss_pred ccccceEEEEeccCCchHHHHHHHcCCCCCcc
Q 008333 281 GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRM 312 (570)
Q Consensus 281 ~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~ 312 (570)
....|||.|||+.++.+|+.+|++.|++ +-.
T Consensus 129 t~ditPliLAAh~NnyEil~~Ll~kg~~-i~~ 159 (822)
T KOG3609|consen 129 TPDITPLMLAAHLNNFEILQCLLTRGHC-IPI 159 (822)
T ss_pred CCCccHHHHHHHhcchHHHHHHHHcCCC-CCC
Confidence 3568999999999999999999999999 533
No 169
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=57.47 E-value=1.2 Score=50.48 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=51.0
Q ss_pred chhHhhhcc-----------cCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCC-cccCCCCCceeeeec
Q 008333 262 SSKIVRAVP-----------KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGI-RMLDPNTSRTLRIYP 325 (570)
Q Consensus 262 ~~~iVr~Ll-----------~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv-~~lD~~gnn~LhIAp 325 (570)
+++|+|++| ++|-+.-+++....+-||.|+..|+-+||..|+.+|-..+ +|.|..|.|+||-|.
T Consensus 867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa 942 (1004)
T KOG0782|consen 867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA 942 (1004)
T ss_pred cHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH
Confidence 355666654 4566666788888899999999999999999999994433 588999999999763
No 170
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=56.73 E-value=3.2 Score=30.88 Aligned_cols=34 Identities=21% Similarity=0.571 Sum_probs=24.6
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceE
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
+.|.+|...|.......-.. ||.+||..|....+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~ 34 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWL 34 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHH
Confidence 36999999886644444444 99999999977554
No 171
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.95 E-value=4.1 Score=43.42 Aligned_cols=33 Identities=21% Similarity=0.594 Sum_probs=22.9
Q ss_pred ccccccCcc--ccCccc-cccccccCceeccCCCcceE
Q 008333 429 SKCTACGTD--FSAFVR-KHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 429 ~~C~~C~~~--Fsl~~R-KHHCR~CG~vfC~~CS~~~~ 463 (570)
..|..|.+. ++.-.+ ..+ .||+.||..|....+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLF 39 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHh
Confidence 479999874 332222 344 899999999988653
No 172
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=55.10 E-value=6.5 Score=37.00 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=20.0
Q ss_pred CCccccccCccccCccccccccccCcee
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIF 454 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vf 454 (570)
....|..|+.. .-.|-|||+.||+.+
T Consensus 47 ~~~~C~~C~~~--kp~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 47 ELKYCSTCKII--KPPRSHHCRVCNRCV 72 (174)
T ss_pred CCEECcccCCc--CCCcceecccccccc
Confidence 46689999753 567899999998764
No 173
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.46 E-value=10 Score=36.04 Aligned_cols=52 Identities=27% Similarity=0.722 Sum_probs=38.1
Q ss_pred CccccccCc-cccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~-~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|.+ +|---. -|.|..|---||..|-. ++.|. +++-.-||+.|-+..
T Consensus 65 datC~IC~KTKFADG~-GH~C~YCq~r~CARCGG-rv~lr---sNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTKFADGC-GHNCSYCQTRFCARCGG-RVSLR---SNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhccccccc-CcccchhhhhHHHhcCC-eeeec---cCceEEeccCCcHHH
Confidence 348999964 554333 49999999999999965 44443 456778999998743
No 174
>COG2126 RPL37A Ribosomal protein L37E [Translation, ribosomal structure and biogenesis]
Probab=54.08 E-value=6.1 Score=32.38 Aligned_cols=6 Identities=67% Similarity=1.902 Sum_probs=2.9
Q ss_pred ccccCc
Q 008333 447 CRNCGD 452 (570)
Q Consensus 447 CR~CG~ 452 (570)
||.||+
T Consensus 19 CRRCGr 24 (61)
T COG2126 19 CRRCGR 24 (61)
T ss_pred hhhccc
Confidence 455544
No 175
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=6.1 Score=39.05 Aligned_cols=24 Identities=25% Similarity=0.791 Sum_probs=19.2
Q ss_pred cccCccccccccccCc---eeccCCCc
Q 008333 437 DFSAFVRKHHCRNCGD---IFCDKCTH 460 (570)
Q Consensus 437 ~Fsl~~RKHHCR~CG~---vfC~~CS~ 460 (570)
.|..+.+||.|+.||. +||-.|.-
T Consensus 8 ~~d~ieGRs~C~~C~~SRkFfCY~C~V 34 (230)
T KOG3795|consen 8 SFDPIEGRSTCPGCKSSRKFFCYDCRV 34 (230)
T ss_pred ccCcccccccCCCCCCcceEEEEeecc
Confidence 4566788999999974 69999974
No 176
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.49 E-value=1.2e+02 Score=36.68 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=15.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008333 12 QYPNPNPNPAVDLQPRSYASAPPFSTS 38 (570)
Q Consensus 12 ~~~~p~p~p~~~~~~~~~~s~pp~~~~ 38 (570)
|++.+- +++..++..+.|+.+++.+.
T Consensus 10 q~~~~~-~~~~~~~~~~p~~~~~~~g~ 35 (887)
T KOG1985|consen 10 QNPPPQ-TGPVQPALFPPASLTPQNGM 35 (887)
T ss_pred cCCCCC-CCCcCcccCCCccCCccCCC
Confidence 555554 55656666666677666664
No 177
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=53.40 E-value=2.2 Score=43.11 Aligned_cols=55 Identities=25% Similarity=0.605 Sum_probs=36.3
Q ss_pred CCccccccCccccCc------------cccccccccCceeccCCCcce--EEecc-------CCCCCceeeccccH
Q 008333 427 AVSKCTACGTDFSAF------------VRKHHCRNCGDIFCDKCTHGR--IALTA-------DANAQPVRVCDRCM 481 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~------------~RKHHCR~CG~vfC~~CS~~~--~~Lp~-------~~~~~pvRVC~~Cy 481 (570)
.+..|..|++.|+-+ .|-..|..|++.|-..|+-.. .++-. .+....+-||+.|-
T Consensus 144 kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg 219 (267)
T KOG3576|consen 144 KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCG 219 (267)
T ss_pred HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccC
Confidence 356899999999742 234469999999999998521 01100 11124578999995
No 178
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=52.53 E-value=8.2 Score=30.44 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=17.7
Q ss_pred CccccccCccccCccccccccccCc
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
...|+.|.... -.|-.+||+||.
T Consensus 14 k~ICrkC~ARn--p~~A~~CRKCg~ 36 (48)
T PRK04136 14 KKICMRCNARN--PWRATKCRKCGY 36 (48)
T ss_pred ccchhcccCCC--CccccccccCCC
Confidence 45799998753 456889999986
No 179
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=51.66 E-value=9.8 Score=30.93 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=21.5
Q ss_pred CccccccCccccC--ccccccccccCcee
Q 008333 428 VSKCTACGTDFSA--FVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~Fsl--~~RKHHCR~CG~vf 454 (570)
.+.|..|+..-.. ..|.++|..||..+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEE
Confidence 5689999866554 78899999999874
No 180
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.39 E-value=6.7 Score=43.22 Aligned_cols=41 Identities=27% Similarity=0.761 Sum_probs=32.9
Q ss_pred CCcccCCCCccccccCccccCcc--ccccccccCceeccCCCcc
Q 008333 420 DHWVPDEAVSKCTACGTDFSAFV--RKHHCRNCGDIFCDKCTHG 461 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~~--RKHHCR~CG~vfC~~CS~~ 461 (570)
..|+... .+.|..|........ -|+||-.||..||..|+..
T Consensus 361 ekwl~~N-~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 361 EKWLESN-SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HHHHHhc-CCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 3687654 789999998766554 3889999999999999864
No 181
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.34 E-value=4.8 Score=42.39 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=29.1
Q ss_pred CccccccCccccCccc-cccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVR-KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R-KHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.-.|..|-. +| .--|--||+|||+.|...+..- +.. |-.|-..+
T Consensus 239 ~~kC~LCLe-----~~~~pSaTpCGHiFCWsCI~~w~~e------k~e--CPlCR~~~ 283 (293)
T KOG0317|consen 239 TRKCSLCLE-----NRSNPSATPCGHIFCWSCILEWCSE------KAE--CPLCREKF 283 (293)
T ss_pred CCceEEEec-----CCCCCCcCcCcchHHHHHHHHHHcc------ccC--CCcccccC
Confidence 468999943 33 3359999999999998755421 111 77776543
No 182
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=51.00 E-value=7.7 Score=41.42 Aligned_cols=48 Identities=23% Similarity=0.642 Sum_probs=35.3
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
.+..|..|....-+..|..-|. .|||-+|... +..+.|-.|-+.+.+.
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCk---HvFCl~CAr~----------~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCK---HVFCLECARS----------DSDKICPLCDDRVQRI 136 (389)
T ss_pred ceEeecccCCcceeeecccccc---hhhhhhhhhc----------CccccCcCcccHHHHH
Confidence 3788999999988888887654 5899999642 2357788887765443
No 183
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=50.48 E-value=9.1 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=18.5
Q ss_pred cccccCccccCccc--cccccccCcee
Q 008333 430 KCTACGTDFSAFVR--KHHCRNCGDIF 454 (570)
Q Consensus 430 ~C~~C~~~Fsl~~R--KHHCR~CG~vf 454 (570)
.|..|+..|.+..+ ..+|..||.-+
T Consensus 5 ~C~~CG~~~~~~~~~~~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGTGVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCCceECCCCCCeE
Confidence 68999998876544 57888888643
No 184
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=50.21 E-value=8.7 Score=44.86 Aligned_cols=31 Identities=29% Similarity=0.810 Sum_probs=24.6
Q ss_pred CCccccccCccccCccccccccccCce------eccCCCcc
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDI------FCDKCTHG 461 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~v------fC~~CS~~ 461 (570)
..+.|..|+.++.. ..|..||.. ||..|-..
T Consensus 14 ~akFC~~CG~~l~~----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 14 NNRFCQKCGTSLTH----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCccccccCCCCCC----CcCCCCCCCCCcccccccccCCc
Confidence 36789999998753 369999887 89888764
No 185
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=49.44 E-value=9.5 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCcccCCC--CccccccCccccCccccccccccCcee
Q 008333 420 DHWVPDEA--VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (570)
Q Consensus 420 ~~Wvpd~~--~~~C~~C~~~Fsl~~RKHHCR~CG~vf 454 (570)
..|+...+ .+.|..|+.. .-.|-|||+.|++-+
T Consensus 103 ~~~~~~~~~~~~~C~~C~~~--rPpRs~HCsvC~~CV 137 (299)
T KOG1311|consen 103 NVDVNGIQVEWKYCDTCQLY--RPPRSSHCSVCNNCV 137 (299)
T ss_pred CcccCCcccceEEcCcCccc--CCCCcccchhhcccc
Confidence 44544333 5789999763 567899999998754
No 186
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=49.10 E-value=3.9 Score=40.88 Aligned_cols=55 Identities=20% Similarity=0.440 Sum_probs=34.6
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcceEEecc--------CCCCCceeeccccHHHHH
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTA--------DANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~--------~~~~~pvRVC~~Cy~~l~ 485 (570)
+.-.|.+|...|..- .--.||++||..|...+..... ....+....|-.|...+.
T Consensus 17 ~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 346899998876422 2357999999999875421110 011233468999987654
No 187
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=47.98 E-value=14 Score=28.87 Aligned_cols=31 Identities=26% Similarity=0.692 Sum_probs=22.5
Q ss_pred ccc--ccCccccC----ccccccccccCceeccCCCc
Q 008333 430 KCT--ACGTDFSA----FVRKHHCRNCGDIFCDKCTH 460 (570)
Q Consensus 430 ~C~--~C~~~Fsl----~~RKHHCR~CG~vfC~~CS~ 460 (570)
-|. .|+..+.. ...+..|..||..||..|..
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~ 56 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKV 56 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCC
Confidence 455 66544433 45678899999999999964
No 188
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=47.26 E-value=12 Score=39.00 Aligned_cols=35 Identities=23% Similarity=0.627 Sum_probs=27.2
Q ss_pred cccCCCCccccccCccccCc-------cccccccccCceecc
Q 008333 422 WVPDEAVSKCTACGTDFSAF-------VRKHHCRNCGDIFCD 456 (570)
Q Consensus 422 Wvpd~~~~~C~~C~~~Fsl~-------~RKHHCR~CG~vfC~ 456 (570)
|-.-++++.|..|+++|.-+ ....||.+||+.|=+
T Consensus 126 vp~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~G 167 (278)
T PF15135_consen 126 VPQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFRG 167 (278)
T ss_pred cCcccccccccccccccCCCccccccceeeeecccccccchh
Confidence 34456799999999998653 347899999998843
No 189
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=47.12 E-value=11 Score=27.26 Aligned_cols=25 Identities=32% Similarity=0.901 Sum_probs=14.9
Q ss_pred cccccCccccCcc-------ccccccccCcee
Q 008333 430 KCTACGTDFSAFV-------RKHHCRNCGDIF 454 (570)
Q Consensus 430 ~C~~C~~~Fsl~~-------RKHHCR~CG~vf 454 (570)
.|..|++.|.+-. ++..|-+||..|
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~ 35 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVW 35 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEE
Confidence 5778888776542 234566665544
No 190
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=46.45 E-value=6.6 Score=42.56 Aligned_cols=33 Identities=30% Similarity=0.759 Sum_probs=22.6
Q ss_pred CCCcccCCC-----CccccccCccccCccccccccccCce
Q 008333 419 KDHWVPDEA-----VSKCTACGTDFSAFVRKHHCRNCGDI 453 (570)
Q Consensus 419 ~~~Wvpd~~-----~~~C~~C~~~Fsl~~RKHHCR~CG~v 453 (570)
-..|.|... ...|..|+. =.--|-||||+|.+.
T Consensus 77 p~~wkPe~~~D~~~lqfCk~Cqg--YKapRSHHCrkCnrC 114 (414)
T KOG1314|consen 77 PLGWKPENPKDEMFLQFCKKCQG--YKAPRSHHCRKCNRC 114 (414)
T ss_pred CCCCCCCCChhHHHHHHHhhccC--cCCCccccchHHHHH
Confidence 457887433 346888864 134689999999774
No 191
>PF09947 DUF2180: Uncharacterized protein conserved in archaea (DUF2180); InterPro: IPR017211 This group represents a predicted zinc finger protein, AF1427 type.
Probab=45.93 E-value=6.7 Score=33.06 Aligned_cols=54 Identities=20% Similarity=0.419 Sum_probs=32.4
Q ss_pred cccccCccccCccccccccccCceeccCCCcceEEeccC-----------CCCCceeeccccHHHH
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTAD-----------ANAQPVRVCDRCMAEV 484 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~-----------~~~~pvRVC~~Cy~~l 484 (570)
.|..|...=.-+.----|..||+.+|..++.... ++.. ....+.-+|..|++.+
T Consensus 2 kCY~Ca~~gkdt~AVavCivCG~GlC~~H~~~e~-~~~~~g~yp~~~~~~~~~l~RilC~~C~~a~ 66 (68)
T PF09947_consen 2 KCYDCAEEGKDTDAVAVCIVCGAGLCMDHSKREE-IPVWEGGYPFPSKKLKKPLPRILCPECHAAL 66 (68)
T ss_pred cchhhhhcCCCccceehHHhcCchhhHHHHhhhh-eeeeccCCCCccccccCCCCeeecHHHHHHh
Confidence 4666654322333345699999999999987532 2211 1122335899998765
No 192
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=45.67 E-value=13 Score=32.73 Aligned_cols=25 Identities=36% Similarity=0.871 Sum_probs=17.1
Q ss_pred CccccccCccccC---------ccccccccccCc
Q 008333 428 VSKCTACGTDFSA---------FVRKHHCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl---------~~RKHHCR~CG~ 452 (570)
.+.|..|+++... +.-|.+||.|++
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~ 66 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGA 66 (92)
T ss_pred CCcCcCCCCcCcccccchHHHHHHhCCCCcccCC
Confidence 4578888877654 334777888875
No 193
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.48 E-value=41 Score=36.54 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCC
Q 008333 49 PQNYPPYPQNSDP 61 (570)
Q Consensus 49 ~~~~~p~~~~~~~ 61 (570)
++.++|||++...
T Consensus 147 ~~~p~p~p~~~~~ 159 (365)
T KOG2391|consen 147 PSPPPPYPQTEYN 159 (365)
T ss_pred CCCCCCCCcccCC
Confidence 5556666665444
No 194
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=44.15 E-value=11 Score=32.05 Aligned_cols=54 Identities=22% Similarity=0.537 Sum_probs=28.5
Q ss_pred cccccCccccCccccccccccCce-----eccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~v-----fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
.|..|+........+.||-.|++- +|-.|-..-..|-.=+ .---.|..|.+.++
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~c~gLiS 61 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACG--AVDYFCNHCHGLIS 61 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETT--EEEEE-TTTT-EE-
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhc--ccceeeccCCceee
Confidence 688888887777778888888764 6777765544443211 23356777776554
No 195
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=42.76 E-value=19 Score=28.45 Aligned_cols=27 Identities=30% Similarity=0.800 Sum_probs=18.8
Q ss_pred CccccccCccc-cCccccccccccCcee
Q 008333 428 VSKCTACGTDF-SAFVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~F-sl~~RKHHCR~CG~vf 454 (570)
...|..|+..| ..-..+.+|..||..+
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEE
Confidence 45899998743 2234578888888765
No 196
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=42.18 E-value=9 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.689 Sum_probs=19.8
Q ss_pred ccccCccccCccccccccccCceeccCCCcce
Q 008333 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (570)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~ 462 (570)
|.+|...+ ......-.||++||..|....
T Consensus 1 C~iC~~~~---~~~~~~~~CGH~fC~~C~~~~ 29 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCGHSFCKECIEKY 29 (39)
T ss_dssp ETTTTSB----SSEEEECTTSEEEEHHHHHHH
T ss_pred CCCCCCcc---cCcCEECCCCCchhHHHHHHH
Confidence 55675533 334567899999999997654
No 197
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=41.58 E-value=25 Score=37.54 Aligned_cols=59 Identities=24% Similarity=0.566 Sum_probs=36.1
Q ss_pred CccccccCccc--c--------CccccccccccC------ceeccCCCcceEEecc---CC--CCCce--eeccccHHHH
Q 008333 428 VSKCTACGTDF--S--------AFVRKHHCRNCG------DIFCDKCTHGRIALTA---DA--NAQPV--RVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~F--s--------l~~RKHHCR~CG------~vfC~~CS~~~~~Lp~---~~--~~~pv--RVC~~Cy~~l 484 (570)
...|..|+..= + -..|..||-.|+ |+-|..|-..+ .|.. .. ....+ -||+.|..-+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~r~e~C~~C~~Yl 262 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK-HLAYLSLEHDAEKAVLKAETCDSCQGYL 262 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeEeecCCCCCcceEEeeccccccch
Confidence 45899998642 1 124677999996 56788887643 2211 11 12234 4999998755
Q ss_pred Hhh
Q 008333 485 TQR 487 (570)
Q Consensus 485 ~~r 487 (570)
+..
T Consensus 263 K~~ 265 (305)
T TIGR01562 263 KIL 265 (305)
T ss_pred hhh
Confidence 443
No 198
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=40.75 E-value=10 Score=38.93 Aligned_cols=41 Identities=24% Similarity=0.578 Sum_probs=26.8
Q ss_pred cccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHH
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~ 482 (570)
+|..|.+.=+ -...+=-.|++|||..|...-. -++|..|.+
T Consensus 5 hCn~C~~~~~--~~~f~LTaC~HvfC~~C~k~~~----------~~~C~lCkk 45 (233)
T KOG4739|consen 5 HCNKCFRFPS--QDPFFLTACRHVFCEPCLKASS----------PDVCPLCKK 45 (233)
T ss_pred EeccccccCC--CCceeeeechhhhhhhhcccCC----------ccccccccc
Confidence 5777765322 3344555899999999975221 128999986
No 199
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=40.05 E-value=8.9 Score=27.08 Aligned_cols=30 Identities=27% Similarity=0.738 Sum_probs=21.1
Q ss_pred cccccCccccCccccccccccCceeccCCCcce
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~ 462 (570)
.|.+|...| .....-..||..||..|....
T Consensus 1 ~C~iC~~~~---~~~~~~~~C~H~~c~~C~~~~ 30 (45)
T cd00162 1 ECPICLEEF---REPVVLLPCGHVFCRSCIDKW 30 (45)
T ss_pred CCCcCchhh---hCceEecCCCChhcHHHHHHH
Confidence 377887776 333445569999999997654
No 200
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=40.04 E-value=14 Score=24.93 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.8
Q ss_pred ccccCCCCCcccc
Q 008333 555 TIECGVCQHPFLV 567 (570)
Q Consensus 555 v~~C~iC~q~F~~ 567 (570)
.+.|++|++.|..
T Consensus 2 l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 2 LVPCPICGRKFNP 14 (25)
T ss_pred CCcCCCCCCEECH
Confidence 4579999999964
No 201
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=39.97 E-value=10 Score=29.01 Aligned_cols=30 Identities=30% Similarity=0.785 Sum_probs=14.4
Q ss_pred ccccCccccCccccccccccCceeccCCCcc
Q 008333 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHG 461 (570)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~ 461 (570)
|.+|.. |+-....--=-.||++||.+|...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQK 30 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHH
Confidence 667777 754333322345999999988764
No 202
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=39.85 E-value=4e+02 Score=28.41 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred CcccCCCCC-ccccCCCCCC---CCCCCCCCccccCCCCC
Q 008333 164 SVKFDSGGG-YFDDKYGGYN---GSRSNLGSDLYAKRPES 199 (570)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 199 (570)
..+||+-.| |=+.--.|+. +++-++|+-|-.|..+.
T Consensus 109 ~grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~ 148 (297)
T PF07174_consen 109 PGRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGE 148 (297)
T ss_pred cccccccccceEEeccCCccccccceeecceeeeccCCCC
Confidence 567776555 4333445554 45556777777766543
No 203
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.81 E-value=20 Score=43.83 Aligned_cols=44 Identities=27% Similarity=0.677 Sum_probs=30.2
Q ss_pred CCccccccCccccCccccccccccCce-----eccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~v-----fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
....|..|++.. -...|..||.. ||..|-... -.-+|..|-.++
T Consensus 625 g~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~~----------~~y~CPKCG~El 673 (1121)
T PRK04023 625 GRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIEV----------EEDECEKCGREP 673 (1121)
T ss_pred cCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCcC----------CCCcCCCCCCCC
Confidence 357999999874 23689999964 999994321 113488887543
No 204
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.51 E-value=11 Score=29.83 Aligned_cols=12 Identities=50% Similarity=0.993 Sum_probs=10.4
Q ss_pred ccccCCCCCccc
Q 008333 555 TIECGVCQHPFL 566 (570)
Q Consensus 555 v~~C~iC~q~F~ 566 (570)
...|++||++|+
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 457999999995
No 205
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=39.44 E-value=9.9 Score=41.06 Aligned_cols=30 Identities=30% Similarity=0.795 Sum_probs=25.8
Q ss_pred ccCccccCccccccccccCceeccCCCcceE
Q 008333 433 ACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 433 ~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
.|+ .|.-+.--..||.|-++-|+.|..+.+
T Consensus 14 ~cg-~~~pl~~L~FCRyC~klrc~~Cv~hEv 43 (449)
T KOG3896|consen 14 TCG-KFRPLPDLVFCRYCFKLRCDDCVLHEV 43 (449)
T ss_pred ecc-ccccccceeeeeccccccccccccccc
Confidence 566 688888889999999999999988765
No 206
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.76 E-value=6.6 Score=40.19 Aligned_cols=49 Identities=24% Similarity=0.532 Sum_probs=29.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
--.|.+|-.. -+---=-.||++||+-|...+..+. .-..+|-.|...+.
T Consensus 47 ~FdCNICLd~----akdPVvTlCGHLFCWpClyqWl~~~-----~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDL----AKDPVVTLCGHLFCWPCLYQWLQTR-----PNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeeccc----cCCCEEeecccceehHHHHHHHhhc-----CCCeeCCccccccc
Confidence 4467777321 1111124799999999987654332 23467788887654
No 207
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=38.76 E-value=19 Score=26.01 Aligned_cols=23 Identities=26% Similarity=0.742 Sum_probs=15.3
Q ss_pred cccccCccccCcc-ccccccccCc
Q 008333 430 KCTACGTDFSAFV-RKHHCRNCGD 452 (570)
Q Consensus 430 ~C~~C~~~Fsl~~-RKHHCR~CG~ 452 (570)
.|..|++.|.+.. -...|+.||.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 4888998888543 3567888875
No 208
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=38.44 E-value=18 Score=26.61 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=3.7
Q ss_pred CceeeccccH
Q 008333 472 QPVRVCDRCM 481 (570)
Q Consensus 472 ~pvRVC~~Cy 481 (570)
--.+||+.|.
T Consensus 22 F~~~VCD~CR 31 (34)
T PF01286_consen 22 FDLPVCDKCR 31 (34)
T ss_dssp TS-S--TTT-
T ss_pred CCcccccccc
Confidence 3456777774
No 209
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=38.21 E-value=13 Score=28.71 Aligned_cols=23 Identities=39% Similarity=1.084 Sum_probs=13.8
Q ss_pred cccccCccccCccccc-----cccccCc
Q 008333 430 KCTACGTDFSAFVRKH-----HCRNCGD 452 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKH-----HCR~CG~ 452 (570)
.|..|+..|..+.+.+ .|-.||.
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 7 RCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred EeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 5777887777664333 3555554
No 210
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=37.93 E-value=2.2e+02 Score=31.88 Aligned_cols=8 Identities=38% Similarity=0.816 Sum_probs=4.7
Q ss_pred hhHhhhcc
Q 008333 263 SKIVRAVP 270 (570)
Q Consensus 263 ~~iVr~Ll 270 (570)
.+|+|+|.
T Consensus 428 aElT~~VP 435 (487)
T KOG4672|consen 428 AELTRLVP 435 (487)
T ss_pred hHHHhhcc
Confidence 56666654
No 211
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=37.90 E-value=16 Score=42.21 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=47.7
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS 318 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gn 318 (570)
..++....|-.|++.|++.+++|..|.|+||++...|...+...++..-.+ +.+.-..+.
T Consensus 404 ~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~-~~~~~~~~~ 463 (605)
T KOG3836|consen 404 ALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVA-ISLKSVNGM 463 (605)
T ss_pred hhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhh-hhccccccc
Confidence 345556678889999999999999999999999999999988877776666 434444443
No 212
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.14 E-value=10 Score=39.59 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=29.0
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
-+|.+|-..- -.--|+.||+|||..|....+ -.+..-.|-.|-..
T Consensus 216 ~kC~lC~e~~----~~ps~t~CgHlFC~~Cl~~~~------t~~k~~~CplCRak 260 (271)
T COG5574 216 YKCFLCLEEP----EVPSCTPCGHLFCLSCLLISW------TKKKYEFCPLCRAK 260 (271)
T ss_pred cceeeeeccc----CCcccccccchhhHHHHHHHH------HhhccccCchhhhh
Confidence 4798886532 234689999999999976421 12333457777643
No 213
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=36.53 E-value=16 Score=38.98 Aligned_cols=27 Identities=37% Similarity=0.703 Sum_probs=19.3
Q ss_pred cCCCCccccccCccccCccccccccccCc
Q 008333 424 PDEAVSKCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 424 pd~~~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
.+.....|..|+. -.--|-|||+-|++
T Consensus 105 ~~g~~R~C~kC~~--iKPdRaHHCsvC~r 131 (307)
T KOG1315|consen 105 SDGAVRYCDKCKC--IKPDRAHHCSVCNR 131 (307)
T ss_pred CCCCceeeccccc--ccCCccccchhhhh
Confidence 4555778888865 23478999998854
No 214
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=36.52 E-value=28 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.666 Sum_probs=22.8
Q ss_pred cccccCccccCccccccccccCceeccCC
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
.|..|++..+-+. ..+|..|+..+..+|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 5889998887776 899999998777666
No 215
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=36.04 E-value=27 Score=30.08 Aligned_cols=31 Identities=23% Similarity=0.619 Sum_probs=23.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCc
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTH 460 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~ 460 (570)
...|..|++.|+. ....--.||.+|...|..
T Consensus 78 ~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 4579999998864 455566889999888864
No 216
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=35.95 E-value=30 Score=38.93 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=13.6
Q ss_pred CCCCCCCceEEeeCCccccccC
Q 008333 205 YDDGYGDGVYAYEGGKLEPYGA 226 (570)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~ 226 (570)
-.||+=+|.-||+-...+=++.
T Consensus 119 ~~dg~~~GlIAY~~~~~~~Wnv 140 (465)
T PF01690_consen 119 PNDGKWDGLIAYDNSSSDGWNV 140 (465)
T ss_pred CCCCceeeeEEecCcccccccc
Confidence 4467777777777665444443
No 217
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.66 E-value=22 Score=42.43 Aligned_cols=43 Identities=26% Similarity=0.523 Sum_probs=31.1
Q ss_pred CCCcccCCC--CccccccCccccCccccccccccCceeccCCCcceE
Q 008333 419 KDHWVPDEA--VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 419 ~~~Wvpd~~--~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
+.-|..... ...|..|.+ ++|+-.--|+.||..+|-.|...+-
T Consensus 218 ~~a~k~a~~g~~~mC~~C~~--tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 218 KVAWKRAVKGIREMCDRCET--TLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred ccchhhcccCcchhhhhhcc--cccceeEEccccCCeeeecchhhcc
Confidence 344655432 568999988 3444445699999999999998765
No 218
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=35.44 E-value=35 Score=39.48 Aligned_cols=60 Identities=22% Similarity=0.424 Sum_probs=42.3
Q ss_pred CccccccCcccc--CccccccccccCceeccCCCcceEEe-cc----CCCCCceeeccccHHHHHhh
Q 008333 428 VSKCTACGTDFS--AFVRKHHCRNCGDIFCDKCTHGRIAL-TA----DANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 428 ~~~C~~C~~~Fs--l~~RKHHCR~CG~vfC~~CS~~~~~L-p~----~~~~~pvRVC~~Cy~~l~~r 487 (570)
.-.|..|++.+. ++.|---|+-+|+-||+.|-.+.+.+ |+ .....+..||+.=+..|...
T Consensus 340 ~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~~WDf~~y~Vs~~a~~~L~~i 406 (580)
T KOG1829|consen 340 NFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLHNWDFTKYPVSNFAKQFLDEI 406 (580)
T ss_pred CceecccCCCcccccccchhHhhhhhhhhCchhcccCcccccccceecccCcccccchhHHHHHHHH
Confidence 347999999998 34566789999999999998875543 43 22335668887666555433
No 219
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=35.35 E-value=24 Score=26.62 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=12.5
Q ss_pred cCccccCccccccccccCceeccCCC
Q 008333 434 CGTDFSAFVRKHHCRNCGDIFCDKCT 459 (570)
Q Consensus 434 C~~~Fsl~~RKHHCR~CG~vfC~~CS 459 (570)
|++.-.+ -..|+.||+.||.++-
T Consensus 6 C~~~~~~---~~~C~~C~~~FC~~Hr 28 (43)
T PF01428_consen 6 CKKKDFL---PFKCKHCGKSFCLKHR 28 (43)
T ss_dssp T--BCTS---HEE-TTTS-EE-TTTH
T ss_pred CcCccCC---CeECCCCCcccCcccc
Confidence 6654332 4679999999998874
No 220
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=35.33 E-value=22 Score=26.66 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=12.2
Q ss_pred cccccCcccc---CccccccccccCcee
Q 008333 430 KCTACGTDFS---AFVRKHHCRNCGDIF 454 (570)
Q Consensus 430 ~C~~C~~~Fs---l~~RKHHCR~CG~vf 454 (570)
.|..|+.+.. ..+...-|..||.|+
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl 29 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVL 29 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBE
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEe
Confidence 5777776542 223344555555543
No 221
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=35.29 E-value=18 Score=32.99 Aligned_cols=25 Identities=20% Similarity=0.592 Sum_probs=19.1
Q ss_pred CccccccCccccCccccccccccCc
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
.-.|..|+..|....+...|-.||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHG 94 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcC
Confidence 4689999999988766566777764
No 222
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.29 E-value=2.5e+02 Score=29.94 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008333 23 DLQPRSYASAPPFSTSYSPSDYSGGYPQNYP 53 (570)
Q Consensus 23 ~~~~~~~~s~pp~~~~~~~~~~~~~~~~~~~ 53 (570)
|..++.++|++--.+.-+|.+ +.|+++|.
T Consensus 169 di~~~~~~s~d~~P~~tGp~~--~syp~Py~ 197 (338)
T KOG0917|consen 169 DIEENEDASADSLPTQTGPTQ--PSYPSPYD 197 (338)
T ss_pred ccCccccccCCCCCCCCCCCC--CCCCCCCC
Confidence 677888998887666666665 33444443
No 223
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=35.09 E-value=64 Score=42.00 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=7.2
Q ss_pred CCccccccccCC
Q 008333 233 SSNSTLFDDYGR 244 (570)
Q Consensus 233 ~~~~a~~~~~~~ 244 (570)
++|.-+|=.||+
T Consensus 1806 rl~~GVmaGYgn 1817 (2039)
T PRK15319 1806 SVTVGVMASYIN 1817 (2039)
T ss_pred cEEEEEEEEecc
Confidence 466666666654
No 224
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=35.01 E-value=21 Score=40.35 Aligned_cols=43 Identities=30% Similarity=0.735 Sum_probs=23.0
Q ss_pred CCCCCCcccCCCCccccc--cCccccCcccccccc--ccCceeccCCCcce
Q 008333 416 NEEKDHWVPDEAVSKCTA--CGTDFSAFVRKHHCR--NCGDIFCDKCTHGR 462 (570)
Q Consensus 416 ~~~~~~Wvpd~~~~~C~~--C~~~Fsl~~RKHHCR--~CG~vfC~~CS~~~ 462 (570)
++.++.-..|...++|.. |+.+|.-| -|| .|=+-+|..|....
T Consensus 446 VEIkPYv~eDq~CdeC~g~~c~~q~aPf----FC~n~~C~QYYCe~CWa~~ 492 (520)
T KOG0129|consen 446 VEIKPYVMEDQLCDECGGRRCGGQFAPF----FCRNATCFQYYCESCWAKI 492 (520)
T ss_pred eeecceeccccchhhhcCeeccCccCCc----ccCCccHHhhhchHHHHHh
Confidence 344555557764555542 54466644 344 35555666676543
No 225
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=34.99 E-value=18 Score=28.74 Aligned_cols=24 Identities=33% Similarity=0.803 Sum_probs=17.1
Q ss_pred ccccccCccccCc--cccccccccCc
Q 008333 429 SKCTACGTDFSAF--VRKHHCRNCGD 452 (570)
Q Consensus 429 ~~C~~C~~~Fsl~--~RKHHCR~CG~ 452 (570)
=.|+.|++.|.+. .+-.-|..||.
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGS 32 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCc
Confidence 3699999999754 45566777764
No 226
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=34.86 E-value=21 Score=36.25 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=18.7
Q ss_pred CccccccCccccCccccccccccCcee
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vf 454 (570)
...|..|+. +..|.+.|..||..+
T Consensus 309 S~~C~~cg~---~~~r~~~C~~cg~~~ 332 (364)
T COG0675 309 SKTCPCCGH---LSGRLFKCPRCGFVH 332 (364)
T ss_pred cccccccCC---ccceeEECCCCCCee
Confidence 578999998 456777888888764
No 227
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=34.78 E-value=18 Score=38.41 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=18.4
Q ss_pred CCccccccCccccCccccccccccCce
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDI 453 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~v 453 (570)
....|..|+. =.--|-|||+.|++.
T Consensus 108 ~~~~C~~C~~--~KP~RS~HC~~Cn~C 132 (309)
T COG5273 108 TENFCSTCNI--YKPPRSHHCSICNRC 132 (309)
T ss_pred cceecccccc--ccCCCCccchhhcch
Confidence 3567888865 245789999998875
No 228
>PF01907 Ribosomal_L37e: Ribosomal protein L37e; InterPro: IPR001569 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins of 56 to 96 amino-acid residues that share a highly conserved region located in the N-terminal part.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A19_A 4A1D_A 4A18_A 4A1B_A 1S1I_Y 3O5H_d 3IZS_l 3O58_d 2ZKR_2 3IZR_l ....
Probab=34.68 E-value=20 Score=29.10 Aligned_cols=7 Identities=57% Similarity=1.516 Sum_probs=3.4
Q ss_pred ccccCce
Q 008333 447 CRNCGDI 453 (570)
Q Consensus 447 CR~CG~v 453 (570)
||.||+.
T Consensus 18 CrRCG~~ 24 (55)
T PF01907_consen 18 CRRCGRR 24 (55)
T ss_dssp -TTTSSE
T ss_pred ecccCCe
Confidence 6666654
No 229
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=34.32 E-value=18 Score=36.76 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=21.6
Q ss_pred eeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 453 IFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 453 vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
-+|..|...+..|-.......+.+|..|-..+
T Consensus 14 ~lC~~C~~~~~~i~ei~~~i~v~~C~~Cg~~~ 45 (236)
T PF04981_consen 14 GLCPDCYLKRFDIIEIPDRIEVTICPKCGRYR 45 (236)
T ss_pred ccChHHhcccCCeeecCCccCceECCCCCCEE
Confidence 47888887776665433345678888887644
No 230
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=33.47 E-value=6.3e+02 Score=30.54 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008333 106 YQPPQQPPAFYPPFDQHQTGPNYAPP 131 (570)
Q Consensus 106 ~~~~~~~~~~~~p~~~~~~~~~~~~p 131 (570)
+|++-.++.+-+||||+|-.|.-...
T Consensus 609 ~~~~~s~~~~~pp~pq~~~~p~~~gr 634 (756)
T KOG2375|consen 609 PQQPGSPPQFMPPYPQPQFSPSGNGR 634 (756)
T ss_pred ccccccccccCCCCCCcccCCCcCCC
Confidence 34444556788888888877766443
No 231
>PRK11595 DNA utilization protein GntX; Provisional
Probab=33.40 E-value=12 Score=37.68 Aligned_cols=31 Identities=26% Similarity=0.778 Sum_probs=23.9
Q ss_pred ccccccCccccCccccccccccCce------eccCCCcc
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDI------FCDKCTHG 461 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~v------fC~~CS~~ 461 (570)
..|..|...|.++ .++|..||+. +|..|...
T Consensus 21 ~lC~~C~~~l~~~--~~~C~~Cg~~~~~~~~~C~~C~~~ 57 (227)
T PRK11595 21 GICSVCSRALRTL--KTCCPQCGLPATHPHLPCGRCLQK 57 (227)
T ss_pred cccHHHHhhCCcc--cCcCccCCCcCCCCCCCcHHHHcC
Confidence 4799998888765 5799999974 48888653
No 232
>PF07776 zf-AD: Zinc-finger associated domain (zf-AD) ; InterPro: IPR012934 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The zf-AD domain, also known as ZAD, forms an atypical treble-cleft-like zinc co-ordinating fold. The zf-AD domain is thought to be involved in mediating dimer formation, but does not bind to DNA []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 1PZW_A.
Probab=33.34 E-value=38 Score=26.63 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=13.1
Q ss_pred CCceeeccccHHHHHhhh
Q 008333 471 AQPVRVCDRCMAEVTQRL 488 (570)
Q Consensus 471 ~~pvRVC~~Cy~~l~~r~ 488 (570)
..+..||..|+..+....
T Consensus 42 ~lp~~IC~~C~~~l~~~~ 59 (75)
T PF07776_consen 42 DLPQQICSSCWEKLQQFY 59 (75)
T ss_dssp SS-SEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 456689999999886543
No 233
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=33.24 E-value=23 Score=27.20 Aligned_cols=23 Identities=30% Similarity=0.713 Sum_probs=15.8
Q ss_pred cccccCccccCc-cccccccccCc
Q 008333 430 KCTACGTDFSAF-VRKHHCRNCGD 452 (570)
Q Consensus 430 ~C~~C~~~Fsl~-~RKHHCR~CG~ 452 (570)
.|..|+..|.+. .....|+.||.
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~ 27 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGY 27 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCc
Confidence 588999998876 33455666654
No 234
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=32.89 E-value=17 Score=43.23 Aligned_cols=30 Identities=37% Similarity=0.681 Sum_probs=20.9
Q ss_pred cccccccccCcccccccccccCCCCCccccCCCCCc
Q 008333 529 GRRMREVACPTCTVHLQVQVPSSGSETIECGVCQHP 564 (570)
Q Consensus 529 ~~~~k~~~~pt~wv~l~v~Vp~~Dsev~~C~iC~q~ 564 (570)
........|.+|.+++-..|- +.|..|.+.
T Consensus 210 ~~~~E~~~C~IC~~~DpEdVL------LLCDsCN~~ 239 (1134)
T KOG0825|consen 210 GLSQEEVKCDICTVHDPEDVL------LLCDSCNKV 239 (1134)
T ss_pred CcccccccceeeccCChHHhh------eeecccccc
Confidence 444567889999966533333 569999886
No 235
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=32.60 E-value=16 Score=39.58 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=3.4
Q ss_pred ceeeccccHHH
Q 008333 473 PVRVCDRCMAE 483 (570)
Q Consensus 473 pvRVC~~Cy~~ 483 (570)
|...|..|-..
T Consensus 302 P~~~C~~Cg~~ 312 (344)
T PF09332_consen 302 PKKHCSNCGSS 312 (344)
T ss_dssp --S--TTT-S-
T ss_pred CCCCCCcCCcC
Confidence 55677777653
No 236
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.17 E-value=21 Score=42.59 Aligned_cols=53 Identities=6% Similarity=0.152 Sum_probs=43.6
Q ss_pred CccCCCchhHhhhcccCC----cccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 256 SSVGSGSSKIVRAVPKVD----THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 256 ~~~~~g~~~iVr~Ll~ag----A~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.++..|+.-.||..|.-. -.+|+.|-.|+++||+|.++-+.+++++|++.+.+
T Consensus 31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~ 87 (822)
T KOG3609|consen 31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE 87 (822)
T ss_pred HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc
Confidence 456667777777766333 36889999999999999999999999999999887
No 237
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=30.57 E-value=15 Score=33.24 Aligned_cols=26 Identities=27% Similarity=0.747 Sum_probs=18.6
Q ss_pred CccccccCccccCccccccccccCce
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~v 453 (570)
.-.|..|+..|........|..||..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~ 95 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSP 95 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCC
Confidence 45899999999887666777777753
No 238
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.56 E-value=2.8e+02 Score=29.67 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCC
Q 008333 30 ASAPPFSTSYSPSD 43 (570)
Q Consensus 30 ~s~pp~~~~~~~~~ 43 (570)
++.++....|+|..
T Consensus 187 p~~~syp~Py~p~p 200 (338)
T KOG0917|consen 187 PTQPSYPSPYDPSP 200 (338)
T ss_pred CCCCCCCCCCCCCC
Confidence 33344444444443
No 239
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=30.44 E-value=29 Score=26.23 Aligned_cols=30 Identities=30% Similarity=0.813 Sum_probs=19.9
Q ss_pred CccccccCccccCccccccccccCce-eccCCC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDI-FCDKCT 459 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~v-fC~~CS 459 (570)
...|..|++ .++..|.||..|... +|..|-
T Consensus 4 ~~~C~~C~~--~i~g~ry~C~~C~d~dlC~~Cf 34 (44)
T smart00291 4 SYSCDTCGK--PIVGVRYHCLVCPDYDLCQSCF 34 (44)
T ss_pred CcCCCCCCC--CCcCCEEECCCCCCccchHHHH
Confidence 346999988 445667888888443 555553
No 240
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=30.20 E-value=22 Score=37.16 Aligned_cols=56 Identities=32% Similarity=0.608 Sum_probs=28.2
Q ss_pred ccccccCccc--cC-------ccccccccccC------ceeccCCCcce-EEec----cCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDF--SA-------FVRKHHCRNCG------DIFCDKCTHGR-IALT----ADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~F--sl-------~~RKHHCR~CG------~vfC~~CS~~~-~~Lp----~~~~~~pvRVC~~Cy~~l 484 (570)
..|..|+..= +. -.|..||-.|| |+-|..|-... ..+. .......+-||+.|..-+
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~Yl 248 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYL 248 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEEE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchH
Confidence 5899998742 11 24778999997 55788887642 1121 122345678999998644
No 241
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=30.11 E-value=4.2e+02 Score=29.96 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=3.8
Q ss_pred CCCCcccc
Q 008333 187 NLGSDLYA 194 (570)
Q Consensus 187 ~~~~~~~~ 194 (570)
-||..||.
T Consensus 508 ~lg~~~~~ 515 (562)
T TIGR01628 508 VLGERLFP 515 (562)
T ss_pred HHHHHhHH
Confidence 34555554
No 242
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.88 E-value=19 Score=28.33 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=5.5
Q ss_pred ccCCCCCccc
Q 008333 557 ECGVCQHPFL 566 (570)
Q Consensus 557 ~C~iC~q~F~ 566 (570)
.|++|+++|+
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7999999996
No 243
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=29.73 E-value=18 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=14.5
Q ss_pred CccccccCccccCccc---cccccccCce
Q 008333 428 VSKCTACGTDFSAFVR---KHHCRNCGDI 453 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R---KHHCR~CG~v 453 (570)
...|.+|++.+....+ .-||..||.|
T Consensus 22 ~~~C~iC~~~~~~~~~~~~vDHdH~tG~v 50 (81)
T PF02945_consen 22 GGRCAICGKPLPGESRKLVVDHDHKTGRV 50 (81)
T ss_dssp TTE-TTT-SEEETTCGGCEEEE-TTTTBE
T ss_pred CCcCcCCCCCcccCCCcceecCCCCCCCc
Confidence 3489999985543333 3388888874
No 244
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.39 E-value=30 Score=28.44 Aligned_cols=30 Identities=27% Similarity=0.688 Sum_probs=20.8
Q ss_pred cccccccCceeccCCCcceEEeccCCCCCceeec-cccHHHHHhhhh
Q 008333 444 KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVC-DRCMAEVTQRLS 489 (570)
Q Consensus 444 KHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC-~~Cy~~l~~r~s 489 (570)
..||..||.- ++ ...+.| ..|.+.+.+++.
T Consensus 3 HkHC~~CG~~-----------Ip-----~~~~fCS~~C~~~~~k~qk 33 (59)
T PF09889_consen 3 HKHCPVCGKP-----------IP-----PDESFCSPKCREEYRKRQK 33 (59)
T ss_pred CCcCCcCCCc-----------CC-----cchhhhCHHHHHHHHHHHH
Confidence 4689999873 33 236888 589988766543
No 245
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=29.20 E-value=20 Score=37.76 Aligned_cols=56 Identities=27% Similarity=0.676 Sum_probs=33.2
Q ss_pred CccccccCcccc---Cc---cc------cccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 428 VSKCTACGTDFS---AF---VR------KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 428 ~~~C~~C~~~Fs---l~---~R------KHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
.-+|.+|+|.|+ ++ .| -.-|-+||+.|=++ |..|+-+-.. +....--|.+|-+.+.
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR-SNLRAHmQTH-S~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR-SNLRAHMQTH-SDVKKHQCPRCGKSFA 254 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcch-HHHHHHHHhh-cCCccccCcchhhHHH
Confidence 447999999998 33 22 23588888888554 2222211112 2233567888987654
No 246
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=29.08 E-value=2.3e+02 Score=32.83 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=19.2
Q ss_pred ccccceEEEEecc----CCchHHHHHHHcCCCCCcccCCCC
Q 008333 281 GVQKFRVKLLAES----GGQSTMDVLCQIGLDGIRMLDPNT 317 (570)
Q Consensus 281 ~~~kTpLHlAa~~----g~~~iv~vLlq~Gadgv~~lD~~g 317 (570)
.+|-+|||-++.- -..+.|.+-.++|.. +.|.+.
T Consensus 341 thG~~plH~L~~vL~~ia~~EGv~~A~~lGmm---ft~~n~ 378 (582)
T PF03276_consen 341 THGSYPLHQLADVLRGIANQEGVATAYNLGMM---FTNQNF 378 (582)
T ss_pred hcccchHHHHHHHHHHHhhhhhHHHHHHhhce---eecCCc
Confidence 4677888754432 112335666677766 555554
No 247
>PRK00420 hypothetical protein; Validated
Probab=28.86 E-value=36 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=14.9
Q ss_pred ccccccCccccC-ccccccccccCce
Q 008333 429 SKCTACGTDFSA-FVRKHHCRNCGDI 453 (570)
Q Consensus 429 ~~C~~C~~~Fsl-~~RKHHCR~CG~v 453 (570)
..|..|+..|.- -.++.-|-.||.+
T Consensus 24 ~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 24 KHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred CCCCCCCCcceecCCCceECCCCCCe
Confidence 589999976653 3344444444443
No 248
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=28.56 E-value=11 Score=40.75 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=14.6
Q ss_pred CCCccccccCccccCccc
Q 008333 426 EAVSKCTACGTDFSAFVR 443 (570)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~R 443 (570)
...++|.+|.+.|++|+.
T Consensus 39 ~~gkECKICtrPfT~Frw 56 (377)
T KOG0153|consen 39 PYGKECKICTRPFTIFRW 56 (377)
T ss_pred ccCCccceecCcceEEEe
Confidence 346799999999999853
No 249
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.45 E-value=28 Score=31.87 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=17.7
Q ss_pred CccccccCccccCccccc-cccccCc
Q 008333 428 VSKCTACGTDFSAFVRKH-HCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKH-HCR~CG~ 452 (570)
.-.|..|+..|....... +|..||.
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs 96 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHS 96 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCC
Confidence 458999999988764433 4777764
No 250
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.68 E-value=25 Score=25.43 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=7.7
Q ss_pred cccccCccccCc
Q 008333 430 KCTACGTDFSAF 441 (570)
Q Consensus 430 ~C~~C~~~Fsl~ 441 (570)
.|..|++.|.++
T Consensus 7 ~C~~Cg~~fe~~ 18 (41)
T smart00834 7 RCEDCGHTFEVL 18 (41)
T ss_pred EcCCCCCEEEEE
Confidence 566777766544
No 251
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=27.60 E-value=35 Score=25.14 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=17.2
Q ss_pred CccccccCcccc-CccccccccccCce
Q 008333 428 VSKCTACGTDFS-AFVRKHHCRNCGDI 453 (570)
Q Consensus 428 ~~~C~~C~~~Fs-l~~RKHHCR~CG~v 453 (570)
...|..|+..|. ...++.-|..||.+
T Consensus 8 ~~~C~~C~~~~~~~~dG~~yC~~cG~~ 34 (36)
T PF11781_consen 8 NEPCPVCGSRWFYSDDGFYYCDRCGHQ 34 (36)
T ss_pred CCcCCCCCCeEeEccCCEEEhhhCceE
Confidence 345888976643 34667777777765
No 252
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=27.37 E-value=22 Score=40.38 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.9
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g 294 (570)
+|+.|..++|..||..|+|-..+|..|+||--|++.++
T Consensus 437 aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkd 474 (591)
T KOG2505|consen 437 AAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKD 474 (591)
T ss_pred HHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHH
Confidence 44555699999999999999999999999999998544
No 253
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=27.20 E-value=30 Score=39.14 Aligned_cols=33 Identities=30% Similarity=0.751 Sum_probs=23.5
Q ss_pred ccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 443 RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 443 RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
+-..|+.|-+|-|..|....+ ....|-.|...+
T Consensus 4 ~L~fC~~C~~irc~~c~~~Ei---------~~~yCp~CL~~~ 36 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEEI---------DSYYCPNCLFEV 36 (483)
T ss_pred cceecccccccCChhhccccc---------ceeECccccccC
Confidence 457899999999999987654 245666666543
No 254
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=26.96 E-value=41 Score=31.68 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=9.3
Q ss_pred CCccccccCcccc
Q 008333 427 AVSKCTACGTDFS 439 (570)
Q Consensus 427 ~~~~C~~C~~~Fs 439 (570)
.-+.|..|+..+-
T Consensus 90 ~~sRC~~CN~~L~ 102 (147)
T PF01927_consen 90 IFSRCPKCNGPLR 102 (147)
T ss_pred CCCccCCCCcEee
Confidence 3568999987654
No 255
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=26.82 E-value=46 Score=25.35 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=5.1
Q ss_pred cccccccCce
Q 008333 444 KHHCRNCGDI 453 (570)
Q Consensus 444 KHHCR~CG~v 453 (570)
+..|+.||.+
T Consensus 20 ~~vC~~Cg~~ 29 (52)
T smart00661 20 RFVCRKCGYE 29 (52)
T ss_pred EEECCcCCCe
Confidence 3445555544
No 256
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=26.74 E-value=30 Score=32.73 Aligned_cols=14 Identities=50% Similarity=1.652 Sum_probs=0.0
Q ss_pred cccccc--------CceeccCC
Q 008333 445 HHCRNC--------GDIFCDKC 458 (570)
Q Consensus 445 HHCR~C--------G~vfC~~C 458 (570)
+||-.| |+|||--|
T Consensus 29 ~hCp~Cg~PLF~KdG~v~CPvC 50 (131)
T COG1645 29 KHCPKCGTPLFRKDGEVFCPVC 50 (131)
T ss_pred hhCcccCCcceeeCCeEECCCC
No 257
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=26.73 E-value=50 Score=41.15 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=4.0
Q ss_pred ccccccCcC
Q 008333 220 KLEPYGARG 228 (570)
Q Consensus 220 ~~~~~~~~~ 228 (570)
|.||-=.|.
T Consensus 300 kfeply~re 308 (2365)
T COG5178 300 KFEPLYSRE 308 (2365)
T ss_pred ccccccccc
Confidence 444444443
No 258
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=28 Score=38.22 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=23.2
Q ss_pred CccccccCccccCccc--cccccccCceeccCCCc
Q 008333 428 VSKCTACGTDFSAFVR--KHHCRNCGDIFCDKCTH 460 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R--KHHCR~CG~vfC~~CS~ 460 (570)
...|..|+...-+..+ ..+|| ||.-||..|-.
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~ 339 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGG 339 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCc
Confidence 4568888765444443 45799 99999999963
No 259
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=26.58 E-value=26 Score=39.38 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=35.8
Q ss_pred ccccccC-ccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHH
Q 008333 429 SKCTACG-TDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (570)
Q Consensus 429 ~~C~~C~-~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~ 482 (570)
..|..|. -.+..++|..-|+.|+.-|=..|..-.+.-...+.-.-+-.|..|-.
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 4588887 57788999999999998875555443332222223345677888865
No 260
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.02 E-value=23 Score=31.96 Aligned_cols=54 Identities=22% Similarity=0.524 Sum_probs=33.8
Q ss_pred CccccccCccccCccccccc------ccc---CceeccCCCcceEEecc-CCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHC------RNC---GDIFCDKCTHGRIALTA-DANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHC------R~C---G~vfC~~CS~~~~~Lp~-~~~~~pvRVC~~Cy~~ 483 (570)
...|+.|+.+.. ..+..| ..| ...||..|..++..... ....+..-+|-.|.++
T Consensus 7 g~~CHqCrqKt~--~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQKTL--DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCCCC--CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 568999976432 223334 566 99999999887654321 1113456788888774
No 261
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=25.97 E-value=34 Score=31.78 Aligned_cols=27 Identities=30% Similarity=0.915 Sum_probs=15.0
Q ss_pred CccccccCccccCccc----cccccccCcee
Q 008333 428 VSKCTACGTDFSAFVR----KHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~vf 454 (570)
.-.|..|+..+....| +..|+.||..+
T Consensus 123 ~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l 153 (157)
T PF10263_consen 123 VYRCPSCGREYKRHRRSKRKRYRCGRCGGPL 153 (157)
T ss_pred EEEcCCCCCEeeeecccchhhEECCCCCCEE
Confidence 3467777765543322 45677776543
No 262
>PF14353 CpXC: CpXC protein
Probab=25.86 E-value=35 Score=31.10 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=14.6
Q ss_pred CCcccchHHHHHHHHHHHHh
Q 008333 497 KPALQSHEDLARKLQEMEKN 516 (570)
Q Consensus 497 k~~~q~~e~L~rkl~ele~~ 516 (570)
.+++....+|.+|+.+++.+
T Consensus 99 ~R~v~~~~~l~EKI~i~e~g 118 (128)
T PF14353_consen 99 VRIVIDYNELREKILIFEAG 118 (128)
T ss_pred eEEeCCHHHHHHHHHHHHcC
Confidence 34577788888888877754
No 263
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=25.71 E-value=60 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=8.3
Q ss_pred CCCCceeeccccH
Q 008333 469 ANAQPVRVCDRCM 481 (570)
Q Consensus 469 ~~~~pvRVC~~Cy 481 (570)
+..+.-.||..|-
T Consensus 17 gd~r~R~vC~~Cg 29 (34)
T PF14803_consen 17 GDDRERLVCPACG 29 (34)
T ss_dssp T-SS-EEEETTTT
T ss_pred CCCccceECCCCC
Confidence 3457778999885
No 264
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=25.61 E-value=35 Score=26.98 Aligned_cols=26 Identities=27% Similarity=0.787 Sum_probs=18.3
Q ss_pred ccccccCccccC-----c---cccccccccCcee
Q 008333 429 SKCTACGTDFSA-----F---VRKHHCRNCGDIF 454 (570)
Q Consensus 429 ~~C~~C~~~Fsl-----~---~RKHHCR~CG~vf 454 (570)
..|..|+..... + ....+|-.||+|+
T Consensus 23 ~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 23 GTCSGCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CccCCCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 489999876642 1 2357888998873
No 265
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=25.60 E-value=17 Score=26.69 Aligned_cols=21 Identities=38% Similarity=1.086 Sum_probs=11.5
Q ss_pred ccccCccc-cCcccccc-----ccccC
Q 008333 431 CTACGTDF-SAFVRKHH-----CRNCG 451 (570)
Q Consensus 431 C~~C~~~F-sl~~RKHH-----CR~CG 451 (570)
|..|.+.+ +..+||+| |..||
T Consensus 2 C~~C~~Ey~~p~~RR~~~~~isC~~CG 28 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFHYQFISCTNCG 28 (35)
T ss_dssp -HHHHHHHCSTTSTTTT-TT--BTTCC
T ss_pred CHHHHHHHcCCCCCcccCcCccCCCCC
Confidence 55665553 45566665 56665
No 266
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=25.24 E-value=44 Score=29.63 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=19.5
Q ss_pred CccccccCccccC---ccccccccccCceeccC
Q 008333 428 VSKCTACGTDFSA---FVRKHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~Fsl---~~RKHHCR~CG~vfC~~ 457 (570)
...|..|++. .. -...--|++||..|=.-
T Consensus 35 ~~~Cp~C~~~-~VkR~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 35 KHVCPFCGRT-TVKRIATGIWKCRKCGAKFAGG 66 (89)
T ss_pred CCcCCCCCCc-ceeeeccCeEEcCCCCCeeccc
Confidence 4589999886 22 12345799999987443
No 267
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=24.88 E-value=34 Score=31.12 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=18.5
Q ss_pred CccccccCccccCccccccccccCc
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
.-.|..|+..|....+..-|-.||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs 94 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHG 94 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCC
Confidence 4579999998887655555777774
No 268
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=24.73 E-value=35 Score=35.41 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=40.7
Q ss_pred CCchhHhhhcccCCc-cccc---ccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 260 SGSSKIVRAVPKVDT-HQDV---KSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA-~vn~---kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
+.+.+|.+-.|..|- +||. +-+.|-|.|-=|.+.+..+++++|+++||-
T Consensus 227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 345888888888885 6774 367899999999999999999999999983
No 269
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.63 E-value=14 Score=38.57 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.0
Q ss_pred ccccccCcCCCCCCCcccccccc
Q 008333 220 KLEPYGARGTVPKSSNSTLFDDY 242 (570)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~ 242 (570)
.|==|||||||..+|-.|++..|
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHH
Confidence 34568999999999999999988
No 270
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.45 E-value=52 Score=22.66 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=10.2
Q ss_pred ccccCCCCCccc
Q 008333 555 TIECGVCQHPFL 566 (570)
Q Consensus 555 v~~C~iC~q~F~ 566 (570)
...|+.|+..|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 558999999995
No 271
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=24.43 E-value=50 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.613 Sum_probs=18.1
Q ss_pred CCC-c-ccCCCCccccccCccccCccccccccccCc
Q 008333 419 KDH-W-VPDEAVSKCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 419 ~~~-W-vpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
+.+ | ........|..|+. +....|-|..||.
T Consensus 15 Rah~~kl~~p~l~~C~~cG~---~~~~H~vc~~cG~ 47 (55)
T TIGR01031 15 RSHDAKLTAPTLVVCPNCGE---FKLPHRVCPSCGY 47 (55)
T ss_pred hcCcccccCCcceECCCCCC---cccCeeECCccCe
Confidence 344 6 44445677988976 2333344777773
No 272
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=24.17 E-value=39 Score=25.71 Aligned_cols=30 Identities=20% Similarity=0.586 Sum_probs=23.1
Q ss_pred cccccCccccCcccccccccc-CceeccCCCcc
Q 008333 430 KCTACGTDFSAFVRKHHCRNC-GDIFCDKCTHG 461 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~C-G~vfC~~CS~~ 461 (570)
.|..|++ .++..|.+|..| ..-+|..|-..
T Consensus 2 ~Cd~C~~--~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQG--PIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCC--cCcCCeEECCCCCCccchHHhhCc
Confidence 5889988 456779999999 56688888653
No 273
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=24.16 E-value=26 Score=25.27 Aligned_cols=30 Identities=30% Similarity=0.701 Sum_probs=19.5
Q ss_pred ccccCccccCccccccccccCceeccCCCcceE
Q 008333 431 CTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 431 C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
|.+|...|.... .=..||+.||..|....+
T Consensus 1 C~iC~~~~~~~~---~~~~C~H~fC~~C~~~~~ 30 (41)
T PF00097_consen 1 CPICLEPFEDPV---ILLPCGHSFCRDCLRKWL 30 (41)
T ss_dssp ETTTSSBCSSEE---EETTTSEEEEHHHHHHHH
T ss_pred CCcCCccccCCC---EEecCCCcchHHHHHHHH
Confidence 556666554333 346789999998876543
No 274
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=23.89 E-value=41 Score=31.71 Aligned_cols=27 Identities=22% Similarity=0.717 Sum_probs=17.3
Q ss_pred CccccccCccccCcc--------ccccccccCcee
Q 008333 428 VSKCTACGTDFSAFV--------RKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~--------RKHHCR~CG~vf 454 (570)
.=.|..|+.+|++.. ++..|..||..+
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l 133 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEEL 133 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEE
Confidence 457999999998632 224555555543
No 275
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=23.57 E-value=46 Score=27.96 Aligned_cols=29 Identities=28% Similarity=0.912 Sum_probs=14.3
Q ss_pred ccccccCccccCccccccc-cccCceeccCCCcc
Q 008333 429 SKCTACGTDFSAFVRKHHC-RNCGDIFCDKCTHG 461 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHC-R~CG~vfC~~CS~~ 461 (570)
..|..|.. +.|.-+| -.|.++||..|...
T Consensus 8 LrCs~C~~----~l~~pv~l~~CeH~fCs~Ci~~ 37 (65)
T PF14835_consen 8 LRCSICFD----ILKEPVCLGGCEHIFCSSCIRD 37 (65)
T ss_dssp TS-SSS-S------SS-B---SSS--B-TTTGGG
T ss_pred cCCcHHHH----HhcCCceeccCccHHHHHHhHH
Confidence 46777744 3566667 78999999999864
No 276
>PRK12496 hypothetical protein; Provisional
Probab=23.52 E-value=43 Score=32.44 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=14.9
Q ss_pred cccccCccccCccccccccccCc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
.|..|++.|....-.--|-.||.
T Consensus 129 ~C~gC~~~~~~~~~~~~C~~CG~ 151 (164)
T PRK12496 129 VCKGCKKKYPEDYPDDVCEICGS 151 (164)
T ss_pred ECCCCCccccCCCCCCcCCCCCC
Confidence 68888888764433345666665
No 277
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.41 E-value=38 Score=31.81 Aligned_cols=14 Identities=43% Similarity=0.907 Sum_probs=10.2
Q ss_pred CccccccCccccCc
Q 008333 428 VSKCTACGTDFSAF 441 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~ 441 (570)
.-.|..|+..|.+.
T Consensus 70 ~~~C~~CG~~~~~~ 83 (135)
T PRK03824 70 VLKCRNCGNEWSLK 83 (135)
T ss_pred EEECCCCCCEEecc
Confidence 45788888877765
No 278
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.38 E-value=44 Score=39.33 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=14.9
Q ss_pred cccccCccccCc--cccccccccCce----eccCCCcc
Q 008333 430 KCTACGTDFSAF--VRKHHCRNCGDI----FCDKCTHG 461 (570)
Q Consensus 430 ~C~~C~~~Fsl~--~RKHHCR~CG~v----fC~~CS~~ 461 (570)
.|..|...+++. .++-.|+.||.. .|..|...
T Consensus 394 ~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 394 RCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred ECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence 444555444432 223456666543 35555443
No 279
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=23.36 E-value=25 Score=26.88 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=14.3
Q ss_pred CccccccCccccCccccccccccC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCG 451 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG 451 (570)
...|..|++. .+...|.||..|-
T Consensus 4 ~~~C~~C~~~-~i~g~Ry~C~~C~ 26 (46)
T PF00569_consen 4 GYTCDGCGTD-PIIGVRYHCLVCP 26 (46)
T ss_dssp SCE-SSS-SS-SEESSEEEESSSS
T ss_pred CeECcCCCCC-cCcCCeEECCCCC
Confidence 3478899874 3445678888874
No 280
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.12 E-value=57 Score=36.94 Aligned_cols=34 Identities=24% Similarity=0.625 Sum_probs=18.2
Q ss_pred cccccCccccC--ccccccccccCce-----eccCCCcceE
Q 008333 430 KCTACGTDFSA--FVRKHHCRNCGDI-----FCDKCTHGRI 463 (570)
Q Consensus 430 ~C~~C~~~Fsl--~~RKHHCR~CG~v-----fC~~CS~~~~ 463 (570)
.|..|....++ ..++-.|+.||.. .|..|.+..+
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l 264 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDL 264 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCee
Confidence 45555544433 2345567777665 4666655443
No 281
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.10 E-value=67 Score=22.62 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=12.9
Q ss_pred eccCCCcceEEeccCCCCCceeeccccH
Q 008333 454 FCDKCTHGRIALTADANAQPVRVCDRCM 481 (570)
Q Consensus 454 fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy 481 (570)
||..|-....... ....|+|..|-
T Consensus 5 fC~~CG~~t~~~~----~g~~r~C~~Cg 28 (32)
T PF09297_consen 5 FCGRCGAPTKPAP----GGWARRCPSCG 28 (32)
T ss_dssp B-TTT--BEEE-S----SSS-EEESSSS
T ss_pred ccCcCCccccCCC----CcCEeECCCCc
Confidence 6777766555443 35789999885
No 282
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=23.06 E-value=37 Score=25.79 Aligned_cols=30 Identities=23% Similarity=0.573 Sum_probs=21.6
Q ss_pred cccccCccccCccccccccccC-ceeccCCCcc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCG-DIFCDKCTHG 461 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG-~vfC~~CS~~ 461 (570)
.|..|++ .+...|.+|..|- .-+|..|-..
T Consensus 2 ~C~~C~~--~i~g~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLK--PIVGVRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCC--CCcCCEEECCCCCCCcCHHHHHCc
Confidence 5889988 3456788999987 4467777553
No 283
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=22.96 E-value=31 Score=38.28 Aligned_cols=27 Identities=30% Similarity=0.795 Sum_probs=23.4
Q ss_pred CccccccCccccCccccccccccCcee
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vf 454 (570)
..+|..|++.|..-...++|+.||-.+
T Consensus 5 ~~rc~~cg~~f~~a~~~~~c~~cGl~l 31 (411)
T COG0498 5 SLRCLKCGREFSQALLQGLCPDCGLFL 31 (411)
T ss_pred EeecCCCCcchhhHHhhCcCCcCCccc
Confidence 358999999999777799999999875
No 284
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=22.75 E-value=38 Score=33.56 Aligned_cols=21 Identities=33% Similarity=0.877 Sum_probs=16.5
Q ss_pred cccccCccccCccccccccccCc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
.|..|.+.|. .-++-|--||.
T Consensus 141 rC~GC~~~f~--~~~~~Cp~CG~ 161 (177)
T COG1439 141 RCHGCKRIFP--EPKDFCPICGS 161 (177)
T ss_pred EEecCceecC--CCCCcCCCCCC
Confidence 8999999998 55666777765
No 285
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=18 Score=35.10 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEE
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIA 464 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~ 464 (570)
...|.+|-..|..- ..-.||+.||..|....+.
T Consensus 13 ~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~ 45 (386)
T KOG2177|consen 13 ELTCPICLEYFREP----VLLPCGHNFCRACLTRSWE 45 (386)
T ss_pred cccChhhHHHhhcC----ccccccchHhHHHHHHhcC
Confidence 45899999888766 5667999999999876554
No 286
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=22.62 E-value=50 Score=29.05 Aligned_cols=9 Identities=22% Similarity=0.741 Sum_probs=5.1
Q ss_pred ccCCCCCcc
Q 008333 557 ECGVCQHPF 565 (570)
Q Consensus 557 ~C~iC~q~F 565 (570)
.|--|++.|
T Consensus 92 ~C~~C~~~w 100 (104)
T TIGR01384 92 KCTKCGYVW 100 (104)
T ss_pred EeCCCCCee
Confidence 455566655
No 287
>PF15616 TerY-C: TerY-C metal binding domain
Probab=22.53 E-value=40 Score=31.88 Aligned_cols=25 Identities=32% Similarity=1.036 Sum_probs=19.6
Q ss_pred CccccccCccccCccccccccccCceeccC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~ 457 (570)
..-|..|+..|.+. -| .||+|+|-.
T Consensus 77 ~PgCP~CGn~~~fa----~C-~CGkl~Ci~ 101 (131)
T PF15616_consen 77 APGCPHCGNQYAFA----VC-GCGKLFCID 101 (131)
T ss_pred CCCCCCCcChhcEE----Ee-cCCCEEEeC
Confidence 35899999988765 36 799999854
No 288
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=22.48 E-value=39 Score=26.45 Aligned_cols=30 Identities=30% Similarity=0.830 Sum_probs=20.9
Q ss_pred cccccCccccCccccccccccC---ceeccCCCc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCG---DIFCDKCTH 460 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG---~vfC~~CS~ 460 (570)
.|..|++. .+...|.||-.|. .-+|..|-.
T Consensus 2 ~Cd~C~~~-pI~G~R~~C~~C~~~d~DlC~~C~~ 34 (48)
T cd02341 2 KCDSCGIE-PIPGTRYHCSECDDGDFDLCQDCVV 34 (48)
T ss_pred CCCCCCCC-ccccceEECCCCCCCCCccCHHHHh
Confidence 48888872 3557789999998 346666644
No 289
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=21.87 E-value=46 Score=33.20 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=31.5
Q ss_pred cccccCceeccCCCcc-eEEecc----CCCCCceeeccccHHHHHhh
Q 008333 446 HCRNCGDIFCDKCTHG-RIALTA----DANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 446 HCR~CG~vfC~~CS~~-~~~Lp~----~~~~~pvRVC~~Cy~~l~~r 487 (570)
.|.-.|+.||..|-.+ ...||. ...-++..||+..++.|...
T Consensus 2 ~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~ 48 (202)
T PF13901_consen 2 FCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQI 48 (202)
T ss_pred ccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHh
Confidence 5888999999999887 344553 23446778999999877654
No 290
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=21.71 E-value=56 Score=29.45 Aligned_cols=33 Identities=24% Similarity=0.556 Sum_probs=25.1
Q ss_pred cccccccCceecc--CCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 444 KHHCRNCGDIFCD--KCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 444 KHHCR~CG~vfC~--~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
--+|..||+.+|. .||-+-. .|.|..|...-.+
T Consensus 49 Ga~CS~C~~~VC~~~~CSlFYt----------krFC~pC~~~~~~ 83 (97)
T PF10170_consen 49 GAPCSICGKPVCVGQDCSLFYT----------KRFCLPCVKRNLK 83 (97)
T ss_pred CccccccCCceEcCCCccEEee----------CceeHHHHHHHHH
Confidence 4689999999996 4886542 4899999975443
No 291
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=21.70 E-value=84 Score=23.82 Aligned_cols=17 Identities=35% Similarity=0.892 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 008333 104 APYQPPQQPPAFYPPFD 120 (570)
Q Consensus 104 ~~~~~~~~~~~~~~p~~ 120 (570)
+||||-+.++-|+.||.
T Consensus 20 gpyqp~peq~lypqpyq 36 (42)
T PF03875_consen 20 GPYQPFPEQPLYPQPYQ 36 (42)
T ss_pred CCcCCCCCCcCCCCCCC
Confidence 45666555445544443
No 292
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=21.20 E-value=44 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.549 Sum_probs=19.9
Q ss_pred cccccCccccCccccccccccCce-eccCCCc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDI-FCDKCTH 460 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~v-fC~~CS~ 460 (570)
.|-.|+. +.+..+|.+|..|-.. +|..|-.
T Consensus 2 ~CDgCg~-~PI~G~RykC~~C~dyDLC~~C~~ 32 (43)
T cd02342 2 QCDGCGV-LPITGPRYKSKVKEDYDLCTICFS 32 (43)
T ss_pred CCCCCCC-CcccccceEeCCCCCCccHHHHhh
Confidence 5778875 3556678888887655 5655543
No 293
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=20.99 E-value=1.7e+03 Score=27.87 Aligned_cols=6 Identities=0% Similarity=-0.069 Sum_probs=2.8
Q ss_pred cccccc
Q 008333 539 TCTVHL 544 (570)
Q Consensus 539 t~wv~l 544 (570)
..|+|+
T Consensus 760 ~~~~e~ 765 (982)
T PF03154_consen 760 PNPLEH 765 (982)
T ss_pred Cccchh
Confidence 346543
No 294
>PHA00732 hypothetical protein
Probab=20.82 E-value=68 Score=27.55 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.5
Q ss_pred cccccCccccC
Q 008333 430 KCTACGTDFSA 440 (570)
Q Consensus 430 ~C~~C~~~Fsl 440 (570)
.|..|++.|..
T Consensus 3 ~C~~Cgk~F~s 13 (79)
T PHA00732 3 KCPICGFTTVT 13 (79)
T ss_pred cCCCCCCccCC
Confidence 58888888864
No 295
>COG3791 Uncharacterized conserved protein [Function unknown]
Probab=20.48 E-value=44 Score=31.06 Aligned_cols=9 Identities=22% Similarity=0.770 Sum_probs=4.8
Q ss_pred cccccCccc
Q 008333 430 KCTACGTDF 438 (570)
Q Consensus 430 ~C~~C~~~F 438 (570)
.|..|+|.+
T Consensus 28 hCs~Crk~~ 36 (133)
T COG3791 28 HCSDCRKAS 36 (133)
T ss_pred CchHhhhhh
Confidence 344666653
No 296
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=20.19 E-value=63 Score=39.98 Aligned_cols=56 Identities=18% Similarity=0.421 Sum_probs=39.8
Q ss_pred cCCCCccccccCccccCcc---ccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 424 PDEAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 424 pd~~~~~C~~C~~~Fsl~~---RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
..-....|.+|+-.-++.. =-.-|.-||.-+|..|..+... +-..+|-.|.....+
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~-------eG~q~CPqCktrYkr 71 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERK-------DGNQSCPQCKTKYKR 71 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhh-------cCCccCCccCCchhh
Confidence 3334679999998766541 1378999999999999876542 234788888765543
No 297
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=20.18 E-value=48 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.583 Sum_probs=17.5
Q ss_pred CccccccCccccCcccc-ccccccCc
Q 008333 428 VSKCTACGTDFSAFVRK-HHCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RK-HHCR~CG~ 452 (570)
.-.|..|+..|....+. -.|-.||.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs 95 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCHG 95 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcCC
Confidence 45799999988775443 44777774
No 298
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=20.17 E-value=4.7e+02 Score=30.38 Aligned_cols=18 Identities=17% Similarity=-0.067 Sum_probs=9.2
Q ss_pred cceEEEEeccCCchHHHHHHH
Q 008333 284 KFRVKLLAESGGQSTMDVLCQ 304 (570)
Q Consensus 284 kTpLHlAa~~g~~~iv~vLlq 304 (570)
.++.|+.... +++..|.+
T Consensus 322 L~p~ec~sW~---~avaaL~~ 339 (582)
T PF03276_consen 322 LTPNECGSWA---SAVAALYQ 339 (582)
T ss_pred cCccccccHH---HHHHHHHH
Confidence 4555665553 34555544
No 299
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.17 E-value=68 Score=38.26 Aligned_cols=33 Identities=21% Similarity=0.708 Sum_probs=19.6
Q ss_pred ccccccCccccCc--cccccccccCce-----eccCCCcc
Q 008333 429 SKCTACGTDFSAF--VRKHHCRNCGDI-----FCDKCTHG 461 (570)
Q Consensus 429 ~~C~~C~~~Fsl~--~RKHHCR~CG~v-----fC~~CS~~ 461 (570)
-.|..|...+++- .++-.|++||+- .|..|.+.
T Consensus 445 ~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 4566666555543 445557777765 66666655
No 300
>PRK06260 threonine synthase; Validated
Probab=20.05 E-value=60 Score=35.35 Aligned_cols=25 Identities=28% Similarity=0.772 Sum_probs=20.3
Q ss_pred ccccccCccccCccccccccccCce
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDI 453 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~v 453 (570)
-+|..|++.|........|..||..
T Consensus 4 ~~C~~cg~~~~~~~~~~~Cp~cg~~ 28 (397)
T PRK06260 4 LKCIECGKEYDPDEIIYTCPECGGL 28 (397)
T ss_pred EEECCCCCCCCCCCccccCCCCCCe
Confidence 4799999999877666789889765
No 301
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=20.01 E-value=76 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=22.5
Q ss_pred ccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 447 CRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 447 CR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
|-.||..+-++=...++ ++..-.-+|..|...+.++
T Consensus 1 Cd~CG~~I~~eP~~~k~-----~~~~y~fCC~tC~~~fk~k 36 (37)
T PF08394_consen 1 CDYCGGEITGEPIVVKI-----GNKVYYFCCPTCLSQFKKK 36 (37)
T ss_pred CCccCCcccCCEEEEEE-----CCeEEEEECHHHHHHHHhh
Confidence 56677776555332222 3345567889999888654
No 302
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.00 E-value=3.4e+02 Score=29.50 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=11.9
Q ss_pred eeCCccccccCcCCCC
Q 008333 216 YEGGKLEPYGARGTVP 231 (570)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (570)
+-||+-.++|+-|+++
T Consensus 88 ~fGgGyN~~~~~g~np 103 (362)
T KOG3875|consen 88 GFGGGYNRFGPYGTNP 103 (362)
T ss_pred ccCcccccccccccCc
Confidence 5667777888888874
Done!