Query 008333
Match_columns 570
No_of_seqs 342 out of 1320
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 23:44:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 1.8E-20 6.3E-25 158.9 4.9 70 417-486 10-79 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 3.1E-20 1E-24 157.4 5.9 69 419-487 5-79 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 6.4E-20 2.2E-24 154.9 3.8 69 419-489 10-78 (82)
4 1vfy_A Phosphatidylinositol-3- 99.8 2.1E-19 7E-24 148.6 4.2 67 418-487 4-70 (73)
5 3t7l_A Zinc finger FYVE domain 99.7 8.1E-19 2.8E-23 150.7 5.7 68 418-487 10-77 (90)
6 1joc_A EEA1, early endosomal a 99.7 1.9E-18 6.5E-23 156.8 4.2 65 419-485 60-124 (125)
7 1wfk_A Zinc finger, FYVE domai 99.7 1.5E-17 5.2E-22 142.4 5.0 62 426-488 7-68 (88)
8 1dvp_A HRS, hepatocyte growth 99.7 2.9E-17 9.9E-22 161.1 4.9 67 417-486 153-219 (220)
9 3zyq_A Hepatocyte growth facto 99.6 4.1E-17 1.4E-21 161.1 4.2 68 417-487 156-223 (226)
10 1y02_A CARP2, FYVE-ring finger 99.6 1.3E-16 4.4E-21 144.0 4.5 61 418-486 9-69 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.5 1.1E-15 3.8E-20 161.4 0.0 68 418-486 365-432 (434)
12 1n0q_A 3ANK, 3 ankyrin repeats 99.3 1.1E-13 3.8E-18 114.0 -1.6 78 229-327 1-78 (93)
13 4gpm_A Engineered protein OR26 99.3 1.9E-13 6.6E-18 127.1 -1.2 65 262-327 82-146 (169)
14 3aaa_C Myotrophin, protein V-1 99.2 9.2E-13 3.1E-17 113.4 -1.3 61 263-324 53-113 (123)
15 4b93_B Ankyrin repeat domain-c 99.2 2.8E-12 9.6E-17 126.9 0.2 65 259-324 161-225 (269)
16 1bi7_B P16INK4A, MTS1, multipl 99.1 3.7E-12 1.3E-16 114.2 -0.1 67 261-328 55-122 (156)
17 3c5r_A BARD-1, BRCA1-associate 99.1 3.8E-12 1.3E-16 111.2 -0.7 65 262-327 55-119 (137)
18 2l6b_A NR1C; ankyrin, consensu 99.1 3.1E-12 1.1E-16 108.5 -1.3 79 229-328 8-86 (115)
19 1d9s_A Cyclin-dependent kinase 99.1 5.8E-12 2E-16 110.4 0.2 61 263-324 57-118 (136)
20 2zgd_A 3 repeat synthetic anky 99.1 2.3E-12 7.8E-17 109.9 -3.2 80 227-327 21-100 (110)
21 2jab_A H10-2-G3; HER2, darpin, 99.1 5.3E-12 1.8E-16 110.7 -1.5 83 224-327 8-90 (136)
22 4gpm_A Engineered protein OR26 99.1 6.8E-12 2.3E-16 116.6 -1.0 80 228-328 35-114 (169)
23 1dcq_A PYK2-associated protein 99.1 6.2E-12 2.1E-16 125.3 -1.7 82 228-327 167-248 (278)
24 3c5r_A BARD-1, BRCA1-associate 99.1 4.4E-12 1.5E-16 110.8 -2.9 80 228-328 8-87 (137)
25 1d9s_A Cyclin-dependent kinase 99.1 1.4E-11 4.8E-16 108.0 -0.0 80 227-328 9-89 (136)
26 2jab_A H10-2-G3; HER2, darpin, 99.0 4.4E-12 1.5E-16 111.2 -4.0 79 228-327 45-123 (136)
27 3deo_A Signal recognition part 99.0 1.2E-11 4.2E-16 113.9 -1.3 61 263-324 89-150 (183)
28 3ehr_A Osteoclast-stimulating 99.0 1.4E-11 4.9E-16 116.1 -1.0 78 229-327 72-150 (222)
29 3aaa_C Myotrophin, protein V-1 99.0 8.9E-12 3.1E-16 107.2 -2.6 78 230-328 7-84 (123)
30 1s70_B 130 kDa myosin-binding 99.0 2.5E-11 8.6E-16 118.2 0.3 77 228-325 197-273 (299)
31 1awc_B Protein (GA binding pro 99.0 1.8E-11 6.1E-16 108.9 -0.9 64 263-327 47-110 (153)
32 3twr_A Tankyrase-2; ankyrin re 99.0 2.4E-11 8.2E-16 108.9 -0.2 80 227-327 39-118 (165)
33 3t8k_A Uncharacterized protein 99.0 1.9E-11 6.4E-16 115.1 -1.3 81 229-326 37-124 (186)
34 1oy3_D Transcription factor in 99.0 1.4E-11 4.9E-16 118.1 -2.4 81 227-328 155-236 (282)
35 3f6q_A Integrin-linked protein 99.0 3.4E-11 1.2E-15 109.8 0.1 79 228-327 37-115 (179)
36 3lvq_E ARF-GAP with SH3 domain 99.0 2.6E-11 8.8E-16 130.0 -1.0 84 227-328 168-251 (497)
37 1oy3_D Transcription factor in 99.0 4.1E-11 1.4E-15 114.9 0.1 77 230-327 192-268 (282)
38 3ui2_A Signal recognition part 99.0 2.9E-11 9.8E-16 117.2 -1.2 61 263-324 90-151 (244)
39 3twr_A Tankyrase-2; ankyrin re 99.0 4.1E-11 1.4E-15 107.4 -0.1 61 263-324 88-148 (165)
40 4hbd_A KN motif and ankyrin re 99.0 2.8E-11 9.7E-16 119.3 -1.4 69 258-327 191-260 (276)
41 3jxi_A Vanilloid receptor-rela 99.0 2.8E-11 9.6E-16 116.0 -1.5 77 229-326 92-185 (260)
42 3f6q_A Integrin-linked protein 99.0 3.5E-11 1.2E-15 109.7 -0.8 66 262-328 17-83 (179)
43 2dzn_A Probable 26S proteasome 99.0 5.1E-11 1.8E-15 111.2 0.1 78 229-327 106-184 (228)
44 1ycs_B 53BP2, P53BP2; ankyrin 99.0 3E-11 1E-15 116.1 -1.6 71 257-328 44-114 (239)
45 1ihb_A P18-INK4C(INK6), cyclin 99.0 3.3E-11 1.1E-15 107.2 -1.3 64 263-327 50-113 (162)
46 3t8k_A Uncharacterized protein 99.0 2E-11 7E-16 114.9 -2.9 86 227-327 72-164 (186)
47 2etb_A Transient receptor pote 99.0 3.9E-11 1.4E-15 115.0 -1.1 77 229-326 89-181 (256)
48 3v30_A DNA-binding protein rfx 99.0 4.6E-11 1.6E-15 107.8 -0.6 79 228-327 34-112 (172)
49 1ycs_B 53BP2, P53BP2; ankyrin 99.0 3.7E-11 1.2E-15 115.5 -1.4 63 261-324 81-144 (239)
50 1ikn_D Protein (I-kappa-B-alph 99.0 5.5E-11 1.9E-15 112.6 -0.3 70 257-327 124-194 (236)
51 2rfm_A Putative ankyrin repeat 99.0 4E-11 1.4E-15 110.3 -1.6 79 228-327 66-144 (192)
52 1awc_B Protein (GA binding pro 99.0 4.4E-11 1.5E-15 106.3 -1.3 70 257-327 74-143 (153)
53 1ihb_A P18-INK4C(INK6), cyclin 99.0 5.6E-11 1.9E-15 105.7 -0.8 65 262-328 17-81 (162)
54 1k1a_A B-cell lymphoma 3-encod 99.0 6.4E-11 2.2E-15 111.2 -0.5 63 261-324 161-223 (241)
55 2pnn_A Transient receptor pote 98.9 5.6E-11 1.9E-15 115.2 -1.0 77 229-326 100-193 (273)
56 3v30_A DNA-binding protein rfx 98.9 4.9E-11 1.7E-15 107.6 -1.5 78 230-328 2-80 (172)
57 3ehr_A Osteoclast-stimulating 98.9 2E-11 6.8E-16 115.1 -4.4 71 256-327 112-183 (222)
58 2y1l_E Darpin-8.4; hydrolase-i 98.9 5.9E-11 2E-15 107.5 -1.1 78 229-327 46-123 (169)
59 4b93_B Ankyrin repeat domain-c 98.9 6.7E-11 2.3E-15 117.0 -0.9 100 228-328 84-196 (269)
60 2b0o_E UPLC1; arfgap, structur 98.9 5E-11 1.7E-15 120.3 -1.9 83 227-327 187-269 (301)
61 3v31_A Ankyrin repeat family A 98.9 8.1E-11 2.8E-15 105.7 -0.7 79 228-327 1-79 (167)
62 1bd8_A P19INK4D CDK4/6 inhibit 98.9 5.6E-11 1.9E-15 105.3 -1.8 65 263-328 48-112 (156)
63 2rfa_A Transient receptor pote 98.9 7.4E-11 2.5E-15 110.9 -1.0 71 257-328 82-165 (232)
64 2vge_A RELA-associated inhibit 98.9 9.9E-11 3.4E-15 112.9 -0.2 64 263-327 34-97 (229)
65 1bd8_A P19INK4D CDK4/6 inhibit 98.9 1.2E-10 4.2E-15 103.1 0.3 63 263-327 15-78 (156)
66 1yyh_A HN1;, notch 1, ankyrin 98.9 6.8E-11 2.3E-15 113.9 -1.7 80 227-327 121-200 (253)
67 2y1l_E Darpin-8.4; hydrolase-i 98.9 8.3E-11 2.8E-15 106.5 -1.0 83 225-328 9-91 (169)
68 2l6b_A NR1C; ankyrin, consensu 98.9 1.6E-10 5.6E-15 97.9 0.6 71 229-320 41-111 (115)
69 1bi7_B P16INK4A, MTS1, multipl 98.9 1.3E-10 4.4E-15 104.1 -0.0 79 228-328 10-89 (156)
70 3utm_A Tankyrase-1; tankyrase, 98.9 9.9E-11 3.4E-15 115.2 -0.9 84 226-327 207-290 (351)
71 1n0r_A 4ANK, 4 ankyrin repeats 98.9 8.9E-11 3.1E-15 99.1 -1.2 61 263-324 48-108 (126)
72 3b7b_A Euchromatic histone-lys 98.9 1.2E-10 3.9E-15 109.7 -0.6 79 228-327 109-187 (237)
73 2rfm_A Putative ankyrin repeat 98.9 8.9E-11 3E-15 108.0 -1.6 80 228-328 33-112 (192)
74 3v31_A Ankyrin repeat family A 98.9 8.9E-11 3E-15 105.4 -1.6 79 229-328 35-113 (167)
75 1yyh_A HN1;, notch 1, ankyrin 98.9 6.8E-11 2.3E-15 113.9 -2.9 80 228-328 88-168 (253)
76 2xai_A ASB-9, ankyrin repeat a 98.9 1.2E-10 4E-15 112.9 -1.7 79 229-328 2-80 (261)
77 1n0r_A 4ANK, 4 ankyrin repeats 98.9 1E-10 3.4E-15 98.8 -2.0 79 229-328 1-79 (126)
78 3jue_A Arfgap with coiled-coil 98.9 1.6E-10 5.4E-15 121.0 -1.1 65 262-327 247-311 (368)
79 3ui2_A Signal recognition part 98.9 7.2E-11 2.5E-15 114.4 -3.4 78 229-328 44-122 (244)
80 2etb_A Transient receptor pote 98.9 6.7E-11 2.3E-15 113.4 -3.6 77 230-327 136-231 (256)
81 3utm_A Tankyrase-1; tankyrase, 98.9 1.9E-10 6.6E-15 113.2 -0.9 80 228-328 56-135 (351)
82 2vge_A RELA-associated inhibit 98.9 8.4E-11 2.9E-15 113.5 -3.5 96 228-324 19-128 (229)
83 1n0q_A 3ANK, 3 ankyrin repeats 98.9 2.1E-10 7.2E-15 94.2 -0.6 61 228-308 33-93 (93)
84 1n11_A Ankyrin; clathrin, BAND 98.9 2.1E-10 7.3E-15 118.3 -0.9 79 228-327 276-354 (437)
85 3aji_A 26S proteasome non-ATPa 98.9 2.1E-10 7.1E-15 107.6 -0.9 79 228-327 104-182 (231)
86 3deo_A Signal recognition part 98.8 9.9E-11 3.4E-15 107.8 -3.2 78 229-328 43-121 (183)
87 3ljn_A Hypothetical protein; a 98.8 2E-10 6.9E-15 115.9 -1.4 69 258-327 181-254 (364)
88 3jxi_A Vanilloid receptor-rela 98.8 9.4E-11 3.2E-15 112.4 -3.7 79 228-327 138-235 (260)
89 2rfa_A Transient receptor pote 98.8 2.3E-10 7.7E-15 107.6 -1.1 79 229-327 120-207 (232)
90 2dzn_A Probable 26S proteasome 98.8 2.2E-10 7.4E-15 107.0 -1.3 80 228-328 70-151 (228)
91 1s70_B 130 kDa myosin-binding 98.8 2.6E-10 9E-15 111.0 -1.0 65 262-327 85-149 (299)
92 2f8y_A Notch homolog 1, transl 98.8 2.4E-10 8.4E-15 106.5 -1.3 80 228-328 90-169 (223)
93 3b7b_A Euchromatic histone-lys 98.8 2.3E-10 7.8E-15 107.7 -1.9 80 228-328 75-155 (237)
94 2xai_A ASB-9, ankyrin repeat a 98.8 3.5E-10 1.2E-14 109.6 -0.9 78 227-326 98-175 (261)
95 3d9h_A CDNA FLJ77766, highly s 98.8 4.7E-10 1.6E-14 110.7 -0.5 84 224-328 53-136 (285)
96 1sw6_A Regulatory protein SWI6 98.8 3.3E-10 1.1E-14 114.3 -1.6 50 275-325 275-324 (327)
97 1k1a_A B-cell lymphoma 3-encod 98.8 3E-10 1E-14 106.6 -2.1 70 258-328 124-194 (241)
98 3ljn_A Hypothetical protein; a 98.8 4.1E-10 1.4E-14 113.6 -1.4 83 228-328 136-222 (364)
99 3hra_A Ankyrin repeat family p 98.8 6.3E-10 2.2E-14 102.0 0.0 77 228-325 70-148 (201)
100 2fo1_E LIN-12 protein; beta-ba 98.8 4.5E-10 1.5E-14 115.2 -1.1 78 229-327 278-356 (373)
101 2pnn_A Transient receptor pote 98.8 1.8E-10 6.2E-15 111.6 -3.9 78 229-327 147-243 (273)
102 3aji_A 26S proteasome non-ATPa 98.8 3.4E-10 1.2E-14 106.1 -2.2 80 228-328 71-150 (231)
103 2f8y_A Notch homolog 1, transl 98.8 5E-10 1.7E-14 104.4 -1.0 80 228-328 56-136 (223)
104 3kea_A K1L; tropism, ANK repea 98.8 3.7E-10 1.2E-14 111.7 -2.4 68 259-327 71-139 (285)
105 3d9h_A CDNA FLJ77766, highly s 98.8 7.7E-10 2.6E-14 109.1 -0.2 79 227-327 154-232 (285)
106 3kea_A K1L; tropism, ANK repea 98.8 6.1E-10 2.1E-14 110.1 -0.9 78 228-328 29-106 (285)
107 3hra_A Ankyrin repeat family p 98.7 8.6E-10 2.9E-14 101.1 -1.1 79 229-328 38-117 (201)
108 1n11_A Ankyrin; clathrin, BAND 98.7 7.6E-10 2.6E-14 114.2 -1.8 101 227-328 11-124 (437)
109 4g8k_A 2-5A-dependent ribonucl 98.7 1.4E-09 4.9E-14 108.5 -0.2 100 228-328 166-284 (337)
110 1wdy_A 2-5A-dependent ribonucl 98.7 1.1E-09 3.6E-14 104.4 -1.3 79 229-328 38-116 (285)
111 1sw6_A Regulatory protein SWI6 98.7 1.6E-09 5.5E-14 109.3 -0.4 67 260-327 107-174 (327)
112 4hbd_A KN motif and ankyrin re 98.7 1.1E-09 3.8E-14 107.9 -1.6 69 259-328 159-227 (276)
113 2b0o_E UPLC1; arfgap, structur 98.7 1.1E-09 3.7E-14 110.5 -2.3 72 228-326 224-295 (301)
114 1ikn_D Protein (I-kappa-B-alph 98.7 1.8E-09 6E-14 102.2 -0.8 69 260-328 55-128 (236)
115 2fo1_E LIN-12 protein; beta-ba 98.7 1.2E-09 4E-14 112.1 -2.2 71 257-328 132-210 (373)
116 3jue_A Arfgap with coiled-coil 98.7 1.1E-09 3.7E-14 114.6 -2.8 67 261-328 211-279 (368)
117 4g8k_A 2-5A-dependent ribonucl 98.7 1.8E-09 6.2E-14 107.8 -1.1 70 257-327 32-102 (337)
118 1wdy_A 2-5A-dependent ribonucl 98.6 2.6E-09 8.8E-14 101.7 -0.7 63 263-326 199-262 (285)
119 3lvq_E ARF-GAP with SH3 domain 98.5 6.3E-09 2.2E-13 111.5 -1.6 69 259-328 141-218 (497)
120 3eu9_A Huntingtin-interacting 98.5 5.5E-09 1.9E-13 97.2 -1.9 79 228-327 107-187 (240)
121 1dcq_A PYK2-associated protein 98.5 1.3E-08 4.5E-13 101.3 0.1 61 228-308 203-263 (278)
122 3eu9_A Huntingtin-interacting 98.5 8.4E-09 2.9E-13 95.9 -1.4 68 258-326 84-151 (240)
123 2zgd_A 3 repeat synthetic anky 98.2 1.2E-07 4.1E-12 80.5 -1.6 54 229-302 56-109 (110)
124 2aja_A Ankyrin repeat family p 98.1 1.7E-08 6E-13 105.7 -9.2 70 257-328 135-210 (376)
125 2aja_A Ankyrin repeat family p 97.8 1.7E-07 5.8E-12 98.1 -8.4 63 257-327 170-235 (376)
126 2vrw_B P95VAV, VAV1, proto-onc 97.7 1.3E-05 4.4E-10 84.0 2.6 44 418-461 347-391 (406)
127 3ky9_A Proto-oncogene VAV; cal 95.2 0.0077 2.6E-07 66.4 2.8 43 419-461 520-563 (587)
128 1wff_A Riken cDNA 2810002D23 p 94.1 0.04 1.4E-06 46.7 4.0 37 420-458 16-53 (85)
129 2zet_C Melanophilin; complex, 94.0 0.026 8.9E-07 52.7 2.9 49 428-483 68-117 (153)
130 1zbd_B Rabphilin-3A; G protein 93.9 0.04 1.4E-06 50.3 4.0 54 427-484 54-108 (134)
131 1wfp_A Zinc finger (AN1-like) 93.7 0.046 1.6E-06 45.2 3.5 28 428-458 25-52 (74)
132 1wfh_A Zinc finger (AN1-like) 93.7 0.041 1.4E-06 44.4 3.1 28 428-458 15-42 (64)
133 1z2q_A LM5-1; membrane protein 93.0 0.062 2.1E-06 44.9 3.4 35 528-570 2-36 (84)
134 1wfl_A Zinc finger protein 216 92.9 0.091 3.1E-06 43.5 4.2 28 428-458 25-52 (74)
135 1wg2_A Zinc finger (AN1-like) 91.9 0.1 3.5E-06 42.1 3.1 28 428-458 15-42 (64)
136 1x4w_A Hypothetical protein FL 89.5 0.12 4.2E-06 42.0 1.5 31 427-458 14-45 (67)
137 1x4u_A Zinc finger, FYVE domai 84.5 0.51 1.8E-05 39.2 2.7 21 550-570 9-29 (84)
138 2yw8_A RUN and FYVE domain-con 81.8 0.64 2.2E-05 38.5 2.2 21 550-570 14-34 (82)
139 2csz_A Synaptotagmin-like prot 81.3 0.76 2.6E-05 38.2 2.4 48 428-483 25-73 (76)
140 1z60_A TFIIH basal transcripti 80.1 0.25 8.4E-06 39.2 -0.9 43 429-480 16-58 (59)
141 2e72_A POGO transposable eleme 79.8 0.42 1.4E-05 36.4 0.4 34 420-454 5-40 (49)
142 3t7l_A Zinc finger FYVE domain 78.3 0.96 3.3E-05 38.2 2.2 21 550-570 15-35 (90)
143 2ecm_A Ring finger and CHY zin 77.8 1.2 4.1E-05 32.7 2.4 35 428-462 5-39 (55)
144 3l11_A E3 ubiquitin-protein li 76.5 0.9 3.1E-05 39.0 1.5 47 428-485 15-61 (115)
145 1iym_A EL5; ring-H2 finger, ub 76.5 1.5 5E-05 32.3 2.5 35 428-462 5-39 (55)
146 2a20_A Regulating synaptic mem 73.1 4.5 0.00015 32.2 4.5 51 427-482 8-59 (62)
147 1bor_A Transcription factor PM 70.6 2.8 9.6E-05 31.5 2.9 31 427-461 5-35 (56)
148 2ysl_A Tripartite motif-contai 70.5 0.93 3.2E-05 35.4 0.1 47 428-483 20-66 (73)
149 2ct2_A Tripartite motif protei 69.5 1.9 6.4E-05 34.7 1.8 52 428-484 15-66 (88)
150 1twf_L ABC10-alpha, DNA-direct 68.7 3.1 0.0001 33.9 2.8 30 428-457 28-59 (70)
151 2ct7_A Ring finger protein 31; 68.0 3.6 0.00012 34.2 3.2 31 430-460 27-59 (86)
152 4gzn_C ZFP-57, zinc finger pro 67.3 2.3 7.9E-05 32.8 1.8 26 430-455 6-43 (60)
153 1x4v_A Hypothetical protein LO 66.5 2.1 7.2E-05 34.3 1.4 28 428-458 12-41 (63)
154 2ysj_A Tripartite motif-contai 65.4 3.7 0.00013 31.1 2.6 32 428-463 20-51 (63)
155 1wys_A Riken cDNA 2310008M20 p 64.3 3.6 0.00012 34.0 2.5 29 428-459 14-44 (75)
156 2ecv_A Tripartite motif-contai 64.1 3 0.0001 32.9 2.0 51 428-484 19-69 (85)
157 1joc_A EEA1, early endosomal a 63.5 2.8 9.6E-05 37.4 1.8 21 550-570 64-84 (125)
158 2egp_A Tripartite motif-contai 63.4 1.8 6.2E-05 34.1 0.5 52 428-484 12-63 (79)
159 1wd2_A Ariadne-1 protein homol 62.7 4.9 0.00017 31.5 2.9 34 428-461 6-43 (60)
160 2jrp_A Putative cytoplasmic pr 62.6 1.9 6.6E-05 36.2 0.5 56 429-486 3-63 (81)
161 3lrq_A E3 ubiquitin-protein li 62.5 2.1 7.3E-05 36.0 0.8 46 429-484 23-68 (100)
162 2ect_A Ring finger protein 126 62.3 5.5 0.00019 31.4 3.2 48 428-484 15-62 (78)
163 1jm7_A BRCA1, breast cancer ty 62.3 2.5 8.7E-05 35.5 1.3 47 429-484 22-68 (112)
164 2ep4_A Ring finger protein 24; 61.9 3 0.0001 32.6 1.6 48 428-484 15-62 (74)
165 1v87_A Deltex protein 2; ring- 60.9 1.5 5E-05 37.4 -0.5 54 429-485 26-93 (114)
166 2lv2_A Insulinoma-associated p 59.6 3.8 0.00013 33.8 1.8 13 428-440 28-40 (85)
167 3fl2_A E3 ubiquitin-protein li 59.5 1.2 4.1E-05 38.8 -1.3 45 429-484 53-97 (124)
168 2d8t_A Dactylidin, ring finger 59.4 2.9 9.9E-05 32.6 1.0 45 428-484 15-59 (71)
169 2lce_A B-cell lymphoma 6 prote 59.3 6.6 0.00023 29.9 3.1 13 428-440 17-29 (74)
170 3uk3_C Zinc finger protein 217 58.0 5.5 0.00019 28.5 2.3 12 429-440 5-16 (57)
171 2ecj_A Tripartite motif-contai 57.5 3.9 0.00013 30.1 1.4 31 428-462 15-45 (58)
172 1x4j_A Ring finger protein 38; 57.1 3.9 0.00013 32.2 1.4 36 427-463 22-57 (75)
173 2ea6_A Ring finger protein 4; 57.0 2.3 8E-05 32.4 0.1 37 427-463 14-53 (69)
174 1vfy_A Phosphatidylinositol-3- 55.4 5.9 0.0002 31.9 2.2 14 557-570 13-26 (73)
175 2ecl_A Ring-box protein 2; RNF 55.1 5.1 0.00017 32.4 1.8 56 420-483 7-73 (81)
176 1bbo_A Human enhancer-binding 54.9 6.7 0.00023 28.0 2.3 11 430-440 3-13 (57)
177 3ng2_A RNF4, snurf, ring finge 54.9 2.6 8.8E-05 32.5 0.0 48 428-483 10-60 (71)
178 2djb_A Polycomb group ring fin 53.6 4.2 0.00014 31.8 1.1 46 428-484 15-60 (72)
179 2adr_A ADR1; transcription reg 53.4 7.1 0.00024 28.2 2.3 11 430-440 4-14 (60)
180 2kiz_A E3 ubiquitin-protein li 52.9 5.6 0.00019 30.5 1.7 48 428-484 14-61 (69)
181 2yur_A Retinoblastoma-binding 51.8 6.4 0.00022 31.0 1.9 46 428-482 15-60 (74)
182 1jm7_B BARD1, BRCA1-associated 51.6 4.3 0.00015 34.9 0.9 44 428-484 22-65 (117)
183 2cot_A Zinc finger protein 435 50.7 13 0.00046 28.3 3.6 13 428-440 18-30 (77)
184 1x5w_A Zinc finger protein 64, 50.6 6.8 0.00023 29.5 1.8 12 429-440 10-21 (70)
185 2ckl_B Ubiquitin ligase protei 50.3 4.3 0.00015 36.9 0.7 47 428-484 54-100 (165)
186 1chc_A Equine herpes virus-1 r 50.3 7.5 0.00026 29.7 2.0 46 428-484 5-50 (68)
187 2gqj_A Zinc finger protein KIA 49.5 3.6 0.00012 33.7 0.0 12 428-439 24-35 (98)
188 1x6e_A Zinc finger protein 24; 49.4 7.4 0.00025 29.5 1.9 12 429-440 15-26 (72)
189 2eps_A POZ-, at HOOK-, and zin 48.7 7 0.00024 28.2 1.6 12 429-440 13-24 (54)
190 2l0b_A E3 ubiquitin-protein li 48.5 4.5 0.00015 33.3 0.5 48 427-483 39-86 (91)
191 2ecn_A Ring finger protein 141 48.2 6 0.0002 30.5 1.2 45 428-485 15-59 (70)
192 3j21_g 50S ribosomal protein L 48.1 5.8 0.0002 30.5 1.0 24 428-453 14-37 (51)
193 2jmo_A Parkin; IBR, E3 ligase, 48.0 17 0.00058 29.7 4.0 33 428-460 25-66 (80)
194 3cc2_Z 50S ribosomal protein L 47.7 5.2 0.00018 35.7 0.8 30 428-457 60-91 (116)
195 2d9h_A Zinc finger protein 692 47.3 7 0.00024 30.0 1.4 12 429-440 8-19 (78)
196 1vd4_A Transcription initiatio 47.2 4.7 0.00016 30.3 0.4 28 429-456 15-51 (62)
197 2ecy_A TNF receptor-associated 46.4 5.3 0.00018 30.6 0.6 45 428-483 15-59 (66)
198 1vq8_1 50S ribosomal protein L 46.2 7.3 0.00025 30.7 1.3 7 447-453 20-26 (57)
199 2csy_A Zinc finger protein 183 46.2 6.9 0.00024 31.1 1.3 45 428-484 15-59 (81)
200 2xeu_A Ring finger protein 4; 45.9 4.5 0.00015 30.3 0.1 48 428-483 3-53 (64)
201 2ecw_A Tripartite motif-contai 45.8 5.7 0.00019 31.3 0.7 51 428-484 19-69 (85)
202 3j20_Y 30S ribosomal protein S 45.7 8.1 0.00028 29.3 1.5 27 428-454 19-47 (50)
203 1wfe_A Riken cDNA 2310008M20 p 44.2 9.2 0.00031 32.3 1.8 28 428-458 25-54 (86)
204 1t1h_A Gspef-atpub14, armadill 44.0 6.3 0.00021 31.0 0.7 46 428-484 8-53 (78)
205 2y43_A E3 ubiquitin-protein li 43.7 6.7 0.00023 32.5 0.9 45 429-484 23-67 (99)
206 1g25_A CDK-activating kinase a 43.2 5.3 0.00018 30.5 0.1 49 429-484 4-53 (65)
207 1vq8_Z 50S ribosomal protein L 42.1 7.3 0.00025 32.7 0.8 31 428-458 27-59 (83)
208 2ayj_A 50S ribosomal protein L 42.0 7.9 0.00027 30.4 0.9 22 428-451 19-40 (56)
209 2lcq_A Putative toxin VAPC6; P 41.7 8.7 0.0003 35.2 1.4 31 418-453 127-157 (165)
210 2ct1_A Transcriptional repress 41.2 11 0.00039 28.8 1.8 12 429-440 16-27 (77)
211 2ckl_A Polycomb group ring fin 40.8 7.5 0.00026 32.7 0.7 46 428-484 15-60 (108)
212 2ctd_A Zinc finger protein 512 40.5 8.7 0.0003 31.7 1.1 12 429-440 35-47 (96)
213 4a0k_B E3 ubiquitin-protein li 40.1 6.6 0.00023 34.7 0.3 57 420-484 40-110 (117)
214 3jyw_9 60S ribosomal protein L 39.1 12 0.00042 30.6 1.7 27 428-456 26-56 (72)
215 3j21_i 50S ribosomal protein L 38.2 11 0.00037 31.8 1.3 28 428-457 35-66 (83)
216 3iz5_m 60S ribosomal protein L 36.7 13 0.00046 31.8 1.6 27 429-457 37-67 (92)
217 2epr_A POZ-, at HOOK-, and zin 36.7 12 0.00041 26.0 1.2 12 429-440 13-24 (48)
218 2jne_A Hypothetical protein YF 36.0 9.7 0.00033 33.1 0.7 54 429-484 33-91 (101)
219 3ztg_A E3 ubiquitin-protein li 35.6 10 0.00034 30.8 0.7 48 428-484 13-60 (92)
220 2drp_A Protein (tramtrack DNA- 35.0 17 0.00058 26.7 1.8 12 429-440 11-22 (66)
221 3izc_m 60S ribosomal protein R 34.5 16 0.00053 31.4 1.7 27 429-457 37-67 (92)
222 2dmd_A Zinc finger protein 64, 34.4 20 0.00069 28.1 2.3 12 429-440 9-20 (96)
223 1z6u_A NP95-like ring finger p 34.2 9.9 0.00034 34.5 0.4 45 429-484 79-123 (150)
224 1x6h_A Transcriptional repress 33.5 18 0.00063 27.7 1.9 12 429-440 16-27 (86)
225 4ap4_A E3 ubiquitin ligase RNF 33.5 8.7 0.0003 32.7 -0.1 50 427-484 71-123 (133)
226 3t6p_A Baculoviral IAP repeat- 32.8 19 0.00067 37.3 2.4 41 428-484 295-336 (345)
227 2kmk_A Zinc finger protein GFI 32.8 18 0.00063 27.3 1.8 10 430-439 31-40 (82)
228 2ee8_A Protein ODD-skipped-rel 32.8 19 0.00066 28.9 2.0 10 430-439 19-28 (106)
229 1llm_C Chimera of ZIF23-GCN4; 32.1 19 0.00065 28.2 1.8 11 430-440 5-15 (88)
230 1a1h_A QGSR zinc finger peptid 31.6 20 0.00068 27.7 1.8 10 430-439 36-45 (90)
231 1pft_A TFIIB, PFTFIIBN; N-term 31.5 19 0.00064 26.7 1.5 27 428-454 5-34 (50)
232 2lt7_A Transcriptional regulat 31.0 18 0.00061 31.7 1.6 27 429-455 23-61 (133)
233 2ctu_A Zinc finger protein 483 31.0 7.5 0.00025 28.9 -0.8 29 429-457 19-52 (73)
234 3hct_A TNF receptor-associated 30.5 13 0.00043 32.0 0.5 46 428-484 18-63 (118)
235 4ayc_A E3 ubiquitin-protein li 30.4 13 0.00043 32.9 0.5 43 430-484 55-97 (138)
236 3zyq_A Hepatocyte growth facto 30.0 70 0.0024 30.8 5.8 77 474-570 103-179 (226)
237 2yt9_A Zinc finger-containing 29.1 24 0.00081 27.7 1.9 12 429-440 8-19 (95)
238 1f2i_G Fusion of N-terminal 17 28.4 25 0.00086 26.3 1.8 13 428-440 19-33 (73)
239 1wim_A KIAA0161 protein; ring 28.1 18 0.00062 29.7 1.0 36 428-464 5-40 (94)
240 1e4u_A Transcriptional repress 27.7 22 0.00076 28.8 1.5 51 427-485 10-61 (78)
241 4a17_Y RPL37A, 60S ribosomal p 27.5 16 0.00054 32.0 0.5 28 428-457 36-67 (103)
242 2epq_A POZ-, at HOOK-, and zin 27.3 23 0.00077 24.0 1.3 12 429-440 11-22 (45)
243 3h0g_L DNA-directed RNA polyme 27.2 29 0.00098 27.7 2.0 25 428-452 21-46 (63)
244 2dlq_A GLI-kruppel family memb 27.1 28 0.00097 28.4 2.1 12 429-440 8-19 (124)
245 3mpx_A FYVE, rhogef and PH dom 27.0 14 0.00047 38.4 0.1 27 536-570 364-390 (434)
246 2y1n_A E3 ubiquitin-protein li 26.8 19 0.00066 38.1 1.2 45 429-484 333-377 (389)
247 2csh_A Zinc finger protein 297 26.7 27 0.00092 28.3 1.9 26 429-455 11-48 (110)
248 3knv_A TNF receptor-associated 26.7 16 0.00055 32.8 0.5 46 428-484 31-76 (141)
249 3c5k_A HD6, histone deacetylas 26.6 24 0.00083 30.8 1.6 26 428-457 24-49 (109)
250 2dmi_A Teashirt homolog 3; zin 26.6 30 0.001 28.3 2.1 9 430-438 52-60 (115)
251 3dpl_R Ring-box protein 1; ubi 26.4 22 0.00076 30.5 1.3 55 420-482 29-97 (106)
252 1dl6_A Transcription factor II 26.2 36 0.0012 26.3 2.3 27 428-454 11-40 (58)
253 1ffk_W Ribosomal protein L37AE 25.6 24 0.00081 29.0 1.2 30 428-457 27-58 (73)
254 2dlk_A Novel protein; ZF-C2H2 25.5 26 0.00087 26.5 1.4 12 429-440 39-52 (79)
255 2k4x_A 30S ribosomal protein S 25.2 33 0.0011 26.4 2.0 26 428-453 18-45 (55)
256 1wjp_A Zinc finger protein 295 25.0 29 0.001 28.0 1.8 12 429-440 17-28 (107)
257 4ic3_A E3 ubiquitin-protein li 24.8 15 0.00051 29.0 -0.1 40 429-484 25-65 (74)
258 1tot_A CREB-binding protein; z 24.5 16 0.00053 27.9 -0.0 28 429-459 7-35 (52)
259 4ap4_A E3 ubiquitin ligase RNF 24.4 15 0.0005 31.3 -0.2 35 428-462 7-44 (133)
260 1rmd_A RAG1; V(D)J recombinati 24.2 19 0.00064 30.6 0.4 46 428-484 23-68 (116)
261 3na7_A HP0958; flagellar bioge 23.7 33 0.0011 33.6 2.2 28 428-455 198-233 (256)
262 2d8v_A Zinc finger FYVE domain 23.7 35 0.0012 27.6 1.9 28 428-460 8-36 (67)
263 2wbt_A B-129; zinc finger; 2.7 23.6 26 0.00088 29.4 1.2 12 429-440 75-86 (129)
264 2kwq_A Protein MCM10 homolog; 23.6 24 0.0008 30.2 0.9 23 430-453 50-74 (92)
265 2ej4_A Zinc finger protein ZIC 23.4 51 0.0018 25.7 2.9 21 420-440 16-37 (95)
266 1weo_A Cellulose synthase, cat 23.4 14 0.00049 31.6 -0.5 52 426-484 14-68 (93)
267 2kdx_A HYPA, hydrogenase/ureas 23.2 29 0.00098 30.2 1.4 26 428-453 73-99 (119)
268 4a18_A RPL37, ribosomal protei 23.0 30 0.001 29.7 1.4 7 447-453 19-25 (94)
269 2ghf_A ZHX1, zinc fingers and 23.0 23 0.00078 30.0 0.7 13 428-440 18-30 (102)
270 3k7a_M Transcription initiatio 22.9 38 0.0013 34.7 2.5 34 422-455 14-53 (345)
271 2fc7_A ZZZ3 protein; structure 22.4 32 0.0011 28.5 1.5 31 430-461 23-57 (82)
272 2lt7_A Transcriptional regulat 22.3 34 0.0012 29.9 1.7 12 429-440 51-62 (133)
273 2lk0_A RNA-binding protein 5; 22.2 29 0.00098 23.8 1.0 21 430-452 7-27 (32)
274 3vhs_A ATPase wrnip1; zinc fin 21.9 27 0.00094 23.3 0.7 10 556-565 7-16 (29)
275 2gmg_A Hypothetical protein PF 20.4 26 0.0009 30.7 0.6 22 447-468 70-100 (105)
276 1dvp_A HRS, hepatocyte growth 20.2 50 0.0017 31.6 2.5 15 556-570 162-176 (220)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.80 E-value=1.8e-20 Score=158.88 Aligned_cols=70 Identities=39% Similarity=0.925 Sum_probs=64.7
Q ss_pred CCCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 417 ~~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
+.++.|++|+++..|+.|++.|++++||||||+||+|||.+|+.+++.|+..+..+++|||+.||..+..
T Consensus 10 ~~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 10 QSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 3467999999999999999999999999999999999999999999999987667899999999998764
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-20 Score=157.42 Aligned_cols=69 Identities=25% Similarity=0.689 Sum_probs=62.5
Q ss_pred CCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCC------CCceeeccccHHHHHhh
Q 008333 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADAN------AQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~------~~pvRVC~~Cy~~l~~r 487 (570)
...|++|+++..|+.|++.|++++||||||+||+|||.+|+.+++.|+..+. .+++|||+.||+.|...
T Consensus 5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~ 79 (84)
T 1x4u_A 5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKS 79 (84)
T ss_dssp CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSC
T ss_pred CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhcc
Confidence 4789999999999999999999999999999999999999999999986553 36799999999988654
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.78 E-value=6.4e-20 Score=154.86 Aligned_cols=69 Identities=45% Similarity=1.018 Sum_probs=57.7
Q ss_pred CCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhhhh
Q 008333 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRLS 489 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r~s 489 (570)
++.|++|+++..|+.|++.|++++||||||.||+|||..|+.+++.|+. ..+++|||+.||..|..+.+
T Consensus 10 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~--~~~~~RVC~~C~~~l~~~~~ 78 (82)
T 2yw8_A 10 GHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS--YPKPVRVCDSCHTLLLQRCS 78 (82)
T ss_dssp -----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT--CSSCEEECHHHHHHTTC---
T ss_pred CCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC--CCCcCEECHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999999999999999886 36899999999998876543
No 4
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.76 E-value=2.1e-19 Score=148.65 Aligned_cols=67 Identities=36% Similarity=0.867 Sum_probs=58.9
Q ss_pred CCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
..+.|+++. .|+.|++.|++++||||||+||+|||++|+.+++.|+..+..+++|||+.||..+...
T Consensus 4 ~~p~W~~~~---~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 4 TPADWIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp ---CCCCCS---BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHH
T ss_pred CCCcCccCC---cccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHHH
Confidence 357899974 8999999999999999999999999999999999999877678999999999987654
No 5
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.74 E-value=8.1e-19 Score=150.70 Aligned_cols=68 Identities=32% Similarity=0.851 Sum_probs=62.4
Q ss_pred CCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
..+.|++|.++..|+.|++.|++++||||||+||+|||..|+.+++.|+.. .+++|||+.||+.|...
T Consensus 10 ~~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~~ 77 (90)
T 3t7l_A 10 KQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--EKEARVCVVCYETISKA 77 (90)
T ss_dssp SCCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT--TEEEEECHHHHHHHHHH
T ss_pred CCCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC--CCCCeECHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999853 48999999999988654
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.72 E-value=1.9e-18 Score=156.76 Aligned_cols=65 Identities=43% Similarity=1.077 Sum_probs=60.0
Q ss_pred CCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 419 KDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
.+.|++|.++..|+.|++.|++++||||||+||+|||..|+.+++.++. ..+++|||+.||..|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~--~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS--SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTT--CSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCC--CCCCCEeCHHHHHHhc
Confidence 4689999999999999999999999999999999999999999998875 4689999999998763
No 7
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.68 E-value=1.5e-17 Score=142.40 Aligned_cols=62 Identities=26% Similarity=0.667 Sum_probs=56.4
Q ss_pred CCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhhh
Q 008333 426 EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQRL 488 (570)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r~ 488 (570)
.++..|+.|++.|++++||||||+||+|||..|+.+++.|+..+ .+++|||+.||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g-~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC-CCcCEECHHHHHHHHhcc
Confidence 45779999999999999999999999999999999999999765 589999999999987654
No 8
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.66 E-value=2.9e-17 Score=161.09 Aligned_cols=67 Identities=37% Similarity=0.895 Sum_probs=60.7
Q ss_pred CCCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 417 ~~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
+..+.|+++ ..|+.|++.|++++||||||+||+|||+.||.+++.++..+..+++|||+.||..+..
T Consensus 153 ~~~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 153 DTAPNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 219 (220)
T ss_dssp SCCCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred cccccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence 346899986 5999999999999999999999999999999999999987767899999999998753
No 9
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.65 E-value=4.1e-17 Score=161.11 Aligned_cols=68 Identities=35% Similarity=0.895 Sum_probs=61.0
Q ss_pred CCCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHhh
Q 008333 417 EEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQR 487 (570)
Q Consensus 417 ~~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~r 487 (570)
+..+.|+++ ..|+.|++.|++++||||||+||+|||..||.+++.++..+..+++|||+.||+.+..+
T Consensus 156 ~~~p~W~~~---~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~ 223 (226)
T 3zyq_A 156 ERAPDWVDA---EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRK 223 (226)
T ss_dssp CCCCCCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC-
T ss_pred ccccccccC---CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhh
Confidence 457899986 48999999999999999999999999999999999999877678999999999987643
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.62 E-value=1.3e-16 Score=143.95 Aligned_cols=61 Identities=25% Similarity=0.523 Sum_probs=43.8
Q ss_pred CCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
.+..|.+|.++..|+.|++.|++++||||||+||+|||++||.+++. .+|||+.||..+..
T Consensus 9 ~~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--------~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 9 YSSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--------GPRLCLLCQRFRAT 69 (120)
T ss_dssp -----------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHHT
T ss_pred cccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--------CceECHHHHHHHhc
Confidence 46789999999999999999999999999999999999999998874 39999999987654
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.1e-15 Score=161.36 Aligned_cols=68 Identities=35% Similarity=0.824 Sum_probs=0.0
Q ss_pred CCCCcccCCCCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
..+.|++|.++..|+.|++.|+++.||||||.||++||..||.++++++.. ..+++|||+.||..+.+
T Consensus 365 ~~p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~-~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 365 RPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYL-KDRMAKVCDGCFGELKK 432 (434)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCC-CCCcCEecHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999988743 46899999999998754
No 12
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.30 E-value=1.1e-13 Score=113.99 Aligned_cols=78 Identities=14% Similarity=0.174 Sum_probs=71.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
+|.|+||+|+..+. .++|+.||+.|+++|.+|..|+||||+|+..|+.++++.|++.|++
T Consensus 1 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 60 (93)
T 1n0q_A 1 NGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (93)
T ss_dssp --CCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 36789999887665 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeeccc
Q 008333 309 GIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe 327 (570)
++..|.+|.|+||+|...
T Consensus 61 -~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 61 -VNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCccCCCCCCHHHHHHHc
Confidence 999999999999998554
No 13
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.28 E-value=1.9e-13 Score=127.05 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=51.1
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+.+||+.||++||++|.+|..|+||||+|++.|+.++|++|++.|+| ++..|.+|.|+||+|...
T Consensus 82 ~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 47788888888888888888888888888888888888888888887 777788888888877544
No 14
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.20 E-value=9.2e-13 Score=113.37 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=49.0
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.+||+.||+.|+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|.+|.|+||+|
T Consensus 53 ~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 53 LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHC
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHh
Confidence 7788888888888888888888888888888877888888888887 777788888888776
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.17 E-value=2.8e-12 Score=126.89 Aligned_cols=65 Identities=8% Similarity=0.103 Sum_probs=40.4
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
..|+.+||+.||++||++|.+|..|+||||+|++.|+.++|++|++.|+| +++.|.+|.|+||+|
T Consensus 161 ~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 161 SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCA 225 (269)
T ss_dssp HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGS
T ss_pred HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 34446666666666666666666666666666666666666666666666 666666666666665
No 16
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.15 E-value=3.7e-12 Score=114.17 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=59.3
Q ss_pred CchhHhhhcccCCcccccccccccc-eEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKF-RVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kT-pLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|+.+||+.||+.|+++|.+|..|+| +||+|++.|+.+++++|++.|++ ++..|..|.|+||+|....
T Consensus 55 ~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~ 122 (156)
T 1bi7_B 55 GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELG 122 (156)
T ss_dssp TCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhC
Confidence 4589999999999999999999998 99999999999999999999999 8899999999999986543
No 17
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.13 E-value=3.8e-12 Score=111.21 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=45.0
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+.+||+.|++.|+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|..|.|+||+|..+
T Consensus 55 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 55 HLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp CHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCH
T ss_pred CHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhc
Confidence 46677777777777777777777777777777777777777777777 666777777777766443
No 18
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.13 E-value=3.1e-12 Score=108.54 Aligned_cols=79 Identities=10% Similarity=0.099 Sum_probs=72.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.+++++|++.|++
T Consensus 8 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 67 (115)
T 2l6b_A 8 DGNTPLHNAAKNGH--------------------AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67 (115)
T ss_dssp SSCCHHHHHHHHTC--------------------HHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 56788999876654 9999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.++||+|....
T Consensus 68 -~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 68 -VNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp -TTCCCTTCCCTTHHHHTTT
T ss_pred -CcccCCCCCCHHHHHHHCC
Confidence 9999999999999986653
No 19
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.12 E-value=5.8e-12 Score=110.42 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=33.7
Q ss_pred hhHhhhcccCCccccccccc-ccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKSGV-QKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~-~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.+||+.||++|+++|.+|.. |+||||+|++.|+.+++++|++.|++ +++.|..|.|+||+|
T Consensus 57 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A 118 (136)
T 1d9s_A 57 AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLA 118 (136)
T ss_dssp HHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence 55555555555555555555 55555555555555555555555555 555555555555554
No 20
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.11 E-value=2.3e-12 Score=109.93 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=72.1
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
-..|.++||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.+++++|+++|
T Consensus 21 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g 80 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQ--------------------DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80 (110)
T ss_dssp -CCHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCccchHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3456678898877665 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe 327 (570)
++ ++..|..|.|+||+|...
T Consensus 81 a~-~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 81 AD-VXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp CC-TTCCCTTSCCHHHHHHHH
T ss_pred CC-ccccccCCCcHHHHHHHc
Confidence 99 999999999999998544
No 21
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.09 E-value=5.3e-12 Score=110.67 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=54.4
Q ss_pred ccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008333 224 YGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (570)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLl 303 (570)
+...-.+.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|+
T Consensus 8 ~~~~~~~~t~l~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 67 (136)
T 2jab_A 8 HHHGSDLGKKLLEAARAGQ--------------------DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67 (136)
T ss_dssp ----CHHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CcccccccHHHHHHHHhCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3444455667777665554 67777777777777777777777777777777777777777
Q ss_pred HcCCCCCcccCCCCCceeeeeccc
Q 008333 304 QIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 304 q~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+.|++ ++..|..|.|+||+|...
T Consensus 68 ~~g~~-~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 68 KNGAD-VNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred HcCCC-CCcCCCCCCCHHHHHHHc
Confidence 77776 666677777777776654
No 22
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.09 E-value=6.8e-12 Score=116.58 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.||+.||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 35 ~~g~t~l~~a~~~~~--------------------~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 94 (169)
T 4gpm_A 35 SDGRTPLHHAAENGH--------------------KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94 (169)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence 456788888776665 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
| ++..|.+|+|+||+|....
T Consensus 95 d-vn~~d~~G~TpLh~A~~~g 114 (169)
T 4gpm_A 95 D-VNAKDSDGRTPLHHAAENG 114 (169)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 9999999999999986653
No 23
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.08 E-value=6.2e-12 Score=125.34 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=74.4
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .|+.+||+.||++||++|.+|..|+||||+|+..|+.++|++|++.|+
T Consensus 167 ~~g~t~Lh~A~~~~~-----------------~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 229 (278)
T 1dcq_A 167 EPDETALHLAVRSVD-----------------RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229 (278)
T ss_dssp STTCBHHHHHHHHCC-----------------TTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCcchHHHHhcc-----------------cchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 357899999998632 245999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
| +++.|.+|.|+||+|...
T Consensus 230 d-~~~~d~~g~tpL~~A~~~ 248 (278)
T 1dcq_A 230 S-IEIANESGETPLDIAKRL 248 (278)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCccCCCCCHHHHHHHc
Confidence 9 999999999999998544
No 24
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.07 E-value=4.4e-12 Score=110.83 Aligned_cols=80 Identities=9% Similarity=-0.039 Sum_probs=73.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 8 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 67 (137)
T 3c5r_A 8 HRGETLLHIASIKGD--------------------IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67 (137)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 567899999887654 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.|+||+|....
T Consensus 68 ~-~~~~~~~g~t~L~~A~~~~ 87 (137)
T 3c5r_A 68 L-VNTTGYQNDSPLHDAAKNG 87 (137)
T ss_dssp C-TTCCCGGGCCHHHHHHHTT
T ss_pred c-ccCcCCCCCCHHHHHHHcC
Confidence 9 9999999999999996654
No 25
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.07 E-value=1.4e-11 Score=107.97 Aligned_cols=80 Identities=13% Similarity=0.177 Sum_probs=72.7
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
...|.|+||+|+..+. .++|+.||+.|+++|.+|..++|+||+|+. |+.++++.|++.|
T Consensus 9 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g 67 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQ--------------------VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG 67 (136)
T ss_dssp CCCCSCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHcCC--------------------HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC
Confidence 4567889999777654 999999999999999999999999999999 9999999999999
Q ss_pred CCCCcccCCC-CCceeeeecccc
Q 008333 307 LDGIRMLDPN-TSRTLRIYPLEN 328 (570)
Q Consensus 307 adgv~~lD~~-gnn~LhIApLe~ 328 (570)
++ ++..|.. |.|+||+|....
T Consensus 68 ~~-~~~~~~~~g~t~L~~A~~~~ 89 (136)
T 1d9s_A 68 AE-PNCADPATLTRPVHDAAREG 89 (136)
T ss_dssp CC-SSCCBTTTTBCHHHHHHHHT
T ss_pred CC-CCCcCCCCCCCHHHHHHHcC
Confidence 99 9999999 999999996653
No 26
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.05 E-value=4.4e-12 Score=111.16 Aligned_cols=79 Identities=15% Similarity=0.036 Sum_probs=72.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 45 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 104 (136)
T 2jab_A 45 EYGLTPLYLATAHGH--------------------LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104 (136)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 457788888776554 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|.+|.|+||+|...
T Consensus 105 ~-~~~~~~~g~tpl~~A~~~ 123 (136)
T 2jab_A 105 D-VNAQDKFGKTAFDISIGN 123 (136)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CcCcCCCCCCHHHHHHHC
Confidence 9 999999999999998554
No 27
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.05 E-value=1.2e-11 Score=113.90 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=36.1
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.+||+.||+.||++|.+| ..|+||||+|++.|+.+++++|+++|++ +++.|.+|.|+||+|
T Consensus 89 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A 150 (183)
T 3deo_A 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 150 (183)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHH
Confidence 555666666666665555 5555666666665555566666666655 555555666665555
No 28
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.04 E-value=1.4e-11 Score=116.10 Aligned_cols=78 Identities=5% Similarity=0.033 Sum_probs=42.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc-CC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI-GL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~-Ga 307 (570)
.|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.+++++|++. |+
T Consensus 72 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~ 131 (222)
T 3ehr_A 72 SIDNPLHEAAKRGN--------------------LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131 (222)
T ss_dssp EESCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred ccccccccccccCc--------------------HHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence 45677888776543 4555555555555555555555555555555555555555554 55
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ +++.|..|.|+||+|...
T Consensus 132 ~-~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 132 E-LNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp C-CCCCCTTSCCHHHHHHHH
T ss_pred C-ccccCCCCCCHHHHHHHc
Confidence 5 445555555555554443
No 29
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.03 E-value=8.9e-12 Score=107.15 Aligned_cols=78 Identities=15% Similarity=0.050 Sum_probs=71.0
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadg 309 (570)
+.++||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 7 ~~~~l~~A~~~~~--------------------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~- 65 (123)
T 3aaa_C 7 CDKEFMWALKNGD--------------------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD- 65 (123)
T ss_dssp CHHHHHHHHHTTC--------------------HHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-
T ss_pred cchHHHHHHHcCC--------------------HHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 4577888776654 9999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeecccc
Q 008333 310 IRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 310 v~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.|+||+|....
T Consensus 66 ~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 66 INAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp TTCCCTTSCCHHHHHHHHT
T ss_pred CCcCCCCCCCHHHHHHHcC
Confidence 9999999999999986543
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.03 E-value=2.5e-11 Score=118.21 Aligned_cols=77 Identities=8% Similarity=0.077 Sum_probs=72.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..++ .+||+.||++||++|.+|..|+||||+|++.|+.+++++|+++|+
T Consensus 197 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 256 (299)
T 1s70_B 197 KSGGTALHVAAAKGY--------------------TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256 (299)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHCCc--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence 457899999887665 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeec
Q 008333 308 DGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIAp 325 (570)
| +++.|..|.|+||+|.
T Consensus 257 d-~~~~d~~g~t~l~~A~ 273 (299)
T 1s70_B 257 D-MEAVNKVGQTAFDVAD 273 (299)
T ss_dssp C-TTCCCTTSCCTTTSCC
T ss_pred C-CCCcCCCCCCHHHHHH
Confidence 9 9999999999999983
No 31
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.03 E-value=1.8e-11 Score=108.89 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=35.5
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 47 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 110 (153)
T 1awc_B 47 FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEH 110 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 5555555555555555555555555555555555555555555555 555555555555555443
No 32
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.03 E-value=2.4e-11 Score=108.90 Aligned_cols=80 Identities=10% Similarity=0.014 Sum_probs=59.9
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
.+.|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 39 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 98 (165)
T 3twr_A 39 EGRQSTPLHFAAGYNR--------------------VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98 (165)
T ss_dssp TTTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHcCh--------------------HHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Confidence 3456788888776543 77777777777777777777777777777777777777777777
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe 327 (570)
++ ++..|..|.|+||+|...
T Consensus 99 ~~-~~~~~~~g~t~L~~A~~~ 118 (165)
T 3twr_A 99 AV-VNVADLWKFTPLHEAAAK 118 (165)
T ss_dssp CC-TTCCCTTCCCHHHHHHHT
T ss_pred CC-CCCcCCCCCCHHHHHHHc
Confidence 77 777777777777777665
No 33
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.02 E-value=1.9e-11 Score=115.14 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=70.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCc------hHHHHH
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQ------STMDVL 302 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~------~iv~vL 302 (570)
.|.|+||+|+..+. ..+..+||+.||++||++|.+|..|+||||+|+..|+. +++++|
T Consensus 37 ~g~T~Lh~A~~~~~----------------~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~L 100 (186)
T 3t8k_A 37 LKSNILYDVLRNNN----------------DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100 (186)
T ss_dssp HTTTHHHHHTTCSC----------------HHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCC----------------cchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHH
Confidence 47899999887653 01125799999999999999999999999999999874 579999
Q ss_pred HHcCCCCCcccCCCCC-ceeeeecc
Q 008333 303 CQIGLDGIRMLDPNTS-RTLRIYPL 326 (570)
Q Consensus 303 lq~Gadgv~~lD~~gn-n~LhIApL 326 (570)
+++|+| +++.|..|. ++||+|..
T Consensus 101 l~~Gad-in~~d~~g~ttpLh~A~~ 124 (186)
T 3t8k_A 101 LEKGAD-ITALYKPYKIVVFKNIFN 124 (186)
T ss_dssp HHTTCC-SSSCBGGGTBCTTGGGGG
T ss_pred HHCCCC-CCccCCCcCchHHHHHHH
Confidence 999999 999999999 99999866
No 34
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.01 E-value=1.4e-11 Score=118.09 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=72.2
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccccc-ccceEEEEeccCCchHHHHHHHc
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGV-QKFRVKLLAESGGQSTMDVLCQI 305 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~-~kTpLHlAa~~g~~~iv~vLlq~ 305 (570)
-..|.|+||+|+..+. .+||+.||++|+++|.++.. |+||||+|++.|+.+++++|++.
T Consensus 155 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 155 NYDGHTPLHVAVIHKD--------------------AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp CTTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 3457788999876554 99999999999999999865 99999999999999999999999
Q ss_pred CCCCCcccCCCCCceeeeecccc
Q 008333 306 GLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 306 Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|++ +++.|..|.|+||+|....
T Consensus 215 gad-~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 215 GAD-PTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp TCC-TTCCCTTSCCHHHHHHTSS
T ss_pred CCC-CcccccCCCCHHHHHHHcC
Confidence 999 9999999999999996653
No 35
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.01 E-value=3.4e-11 Score=109.83 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=66.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.+++++|++.|+
T Consensus 37 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 96 (179)
T 3f6q_A 37 DHGFSPLHWACREGR--------------------SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96 (179)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 456788999876554 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|.|+||+|...
T Consensus 97 ~-~~~~d~~g~t~L~~A~~~ 115 (179)
T 3f6q_A 97 D-INAVNEHGNVPLHYACFW 115 (179)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCccCCCCCCHHHHHHHc
Confidence 8 888888888888888766
No 36
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.00 E-value=2.6e-11 Score=130.00 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=74.8
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
-..|.|+||+|+.- +..|+.+||++||.+||++|.+|..|+||||+|+..|+.++|++|++.|
T Consensus 168 ~~~g~t~Lh~A~~~-----------------a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 230 (497)
T 3lvq_E 168 QAPEELVLHLAVKV-----------------ANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230 (497)
T ss_dssp CCSCBCHHHHHHHT-----------------CCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTC
T ss_pred ccccchHHHHHHHh-----------------cccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34688999998541 1245699999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe~ 328 (570)
|| +++.|.+|.|+||+|....
T Consensus 231 a~-~~~~d~~g~tpl~~A~~~~ 251 (497)
T 3lvq_E 231 AL-VGTVNEAGETALDIARKKH 251 (497)
T ss_dssp CC-CSCCCTTCCCHHHHHHHTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcC
Confidence 99 9999999999999997664
No 37
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.99 E-value=4.1e-11 Score=114.88 Aligned_cols=77 Identities=4% Similarity=-0.135 Sum_probs=60.8
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG 309 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadg 309 (570)
|.|+||+|+..+. .+||+.||++||++|.+|..|+||||+|++.|+.+++++|+++|++
T Consensus 192 g~tpL~~A~~~~~--------------------~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~- 250 (282)
T 1oy3_D 192 GRTPLHLAVEAQA--------------------ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP- 250 (282)
T ss_dssp CCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC-
T ss_pred CcCHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC-
Confidence 8899999886554 8999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCceeeeeccc
Q 008333 310 IRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 310 v~~lD~~gnn~LhIApLe 327 (570)
++..|.+|.|+|+++.-.
T Consensus 251 ~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 251 EPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp CCCCC-------------
T ss_pred cCcCCCcccccccccCCc
Confidence 999999999999997444
No 38
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.99 E-value=2.9e-11 Score=117.19 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=35.8
Q ss_pred hhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.+||+.||++||++|.+| ..|+||||+|++.|+.+++++|+++|++ +++.|..|.|+||+|
T Consensus 90 ~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A 151 (244)
T 3ui2_A 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELA 151 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 555555555565555555 4555566665555555555555555555 555555555555555
No 39
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.99 E-value=4.1e-11 Score=107.37 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=30.9
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.+||+.|++.|+++|.+|..|+||||+|++.|+.++++.|++.|++ ++..|.+|.|+||+|
T Consensus 88 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 88 YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLV 148 (165)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGS
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhH
Confidence 4455555555555555555555555555555555555555555555 444555555555443
No 40
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.99 E-value=2.8e-11 Score=119.32 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=56.6
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeeccc
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq-~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+..|+.+||+.||++||++|.+|..|+||||+|++.|+.+++++|++ .|+| +++.|.+|.|+||+|...
T Consensus 191 ~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDA 260 (276)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHc
Confidence 34455888888888888888888888888888888888888888888 7888 888888888888887444
No 41
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.99 E-value=2.8e-11 Score=116.02 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccc--------------ccccceEEEEeccC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKS--------------GVQKFRVKLLAESG 294 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd--------------~~~kTpLHlAa~~g 294 (570)
.|.|+||+|+..+. .+||+.||++||++|.+| ..|+||||+|++.|
T Consensus 92 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 151 (260)
T 3jxi_A 92 RGQTALHIAIERRC--------------------KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151 (260)
T ss_dssp ESBCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC
Confidence 67899999887654 999999999999999999 68999999999999
Q ss_pred CchHHHHHHH---cCCCCCcccCCCCCceeeeecc
Q 008333 295 GQSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 295 ~~~iv~vLlq---~Gadgv~~lD~~gnn~LhIApL 326 (570)
+.+++++|++ .|++ ++..|.+|+|+||+|..
T Consensus 152 ~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 152 QPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVA 185 (260)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHH
Confidence 9999999999 9999 99999999999999863
No 42
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.98 E-value=3.5e-11 Score=109.71 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=60.1
Q ss_pred chhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 262 SSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 262 ~~~iVr~Ll~a-gA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+.++|+.||+. ++++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|....
T Consensus 17 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 17 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp CHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred CHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 48999999987 778999999999999999999999999999999999 9899999999999998764
No 43
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.98 E-value=5.1e-11 Score=111.22 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=41.9
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC-C
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG-L 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G-a 307 (570)
.|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.+++++|++.| +
T Consensus 106 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 165 (228)
T 2dzn_A 106 QGVTCLHLAVGKKW--------------------FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165 (228)
T ss_dssp TCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 46777888765443 45555555555555555555555555555555555555555555 4
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|+|+||+|...
T Consensus 166 ~-~~~~d~~g~t~L~~A~~~ 184 (228)
T 2dzn_A 166 A-VNWQDKQGWTPLFHALAE 184 (228)
T ss_dssp C-SCCCCTTSCCHHHHHHHT
T ss_pred c-ccCcCCCCCCHHHHHHHc
Confidence 4 445555555555554443
No 44
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.98 E-value=3e-11 Score=116.07 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=66.2
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
++..|+.++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|++ ++..|.+|.|+||+|....
T Consensus 44 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~ 114 (239)
T 1ycs_B 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCN 114 (239)
T ss_dssp HHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence 3456789999999999999999999999999999999999999999999999 9999999999999997654
No 45
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.98 E-value=3.3e-11 Score=107.20 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=47.4
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.+||+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 50 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 113 (162)
T 1ihb_A 50 PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKE 113 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 6777777777777777777777777777777777777777777777 777777777777777655
No 46
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.97 E-value=2e-11 Score=114.87 Aligned_cols=86 Identities=8% Similarity=-0.057 Sum_probs=71.6
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccccccc-ceEEEEeccCCc-----hHHH
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQK-FRVKLLAESGGQ-----STMD 300 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~k-TpLHlAa~~g~~-----~iv~ 300 (570)
-..|.|+||+|++.+. ....+..+||++||++||++|.+|..|+ |+||+|+..+.. ++++
T Consensus 72 d~~g~TpLh~a~~~~~--------------~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 72 TKEGTTLFFPLFQGGG--------------NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp CTTCCCTHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCC--------------cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 3568899999988653 0011246899999999999999999999 999999995543 5899
Q ss_pred HHHH-cCCCCCcccCCCCCceeeeeccc
Q 008333 301 VLCQ-IGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 301 vLlq-~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+|++ .|+| +++.|..|.|+||+|...
T Consensus 138 ~Ll~~~gad-~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 138 LIFSQSGLQ-LLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp HHHTSTTCC-TTCCCTTSCCHHHHHHTT
T ss_pred HHHHhcCCC-CcccCCCCCCHHHHHHHc
Confidence 9999 9999 999999999999998544
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.97 E-value=3.9e-11 Score=114.99 Aligned_cols=77 Identities=8% Similarity=0.025 Sum_probs=71.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCccccccccc-------------ccceEEEEeccCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGV-------------QKFRVKLLAESGG 295 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~-------------~kTpLHlAa~~g~ 295 (570)
.|.|+||+|+..+. .+||+.||++||++|.+|.. |+||||+|++.|+
T Consensus 89 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 89 QGHSALHIAIEKRS--------------------LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp TTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred cCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCC
Confidence 57899999886654 99999999999999999986 9999999999999
Q ss_pred chHHHHHHH---cCCCCCcccCCCCCceeeeecc
Q 008333 296 QSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 296 ~~iv~vLlq---~Gadgv~~lD~~gnn~LhIApL 326 (570)
.++++.|++ .|++ ++..|.+|.|+||+|..
T Consensus 149 ~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 149 WDVVTYLLENPHQPAS-LEATDSLGNTVLHALVM 181 (256)
T ss_dssp HHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHhccccCCC-cCccCCCCCCHHHHHHH
Confidence 999999999 9999 99999999999999865
No 48
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.97 E-value=4.6e-11 Score=107.78 Aligned_cols=79 Identities=13% Similarity=0.002 Sum_probs=61.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.||+.|+++|.+|..++|+||+|++.|+.+++++|++.|+
T Consensus 34 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (172)
T 3v30_A 34 ERGFTPLIWASAFGE--------------------IETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93 (172)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 456788998776543 778888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|.|+||+|...
T Consensus 94 ~-~~~~~~~g~t~L~~A~~~ 112 (172)
T 3v30_A 94 D-INIYDWNGGTPLLYAVRG 112 (172)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHc
Confidence 7 777788888888887665
No 49
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.97 E-value=3.7e-11 Score=115.48 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=59.6
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCC-ceeeee
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTS-RTLRIY 324 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gn-n~LhIA 324 (570)
|+.+||+.||++||++|.+|..|+||||+|+..|+.+++++|++.|++ ++..|..+. |+||++
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKC 144 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHH
Confidence 349999999999999999999999999999999999999999999999 889988887 999987
No 50
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.97 E-value=5.5e-11 Score=112.64 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=58.5
Q ss_pred ccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
++..|+.+||+.||+.||++|.++. .|+||||+|++.|+.+++++|++.|++ +++.|..|.|+||+|...
T Consensus 124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~ 194 (236)
T 1ikn_D 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGR 194 (236)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTS
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHcc
Confidence 3455678888888888888888887 888888888888888888888888888 888888888888887544
No 51
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.96 E-value=4e-11 Score=110.31 Aligned_cols=79 Identities=9% Similarity=-0.076 Sum_probs=63.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+|+||+|+..|+.++++.|++.|+
T Consensus 66 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 125 (192)
T 2rfm_A 66 IEGSTALIWAVKNNR--------------------LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125 (192)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccCccHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Confidence 356789999876554 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|.|+||+|...
T Consensus 126 ~-~~~~~~~g~t~L~~A~~~ 144 (192)
T 2rfm_A 126 N-VNDRNLEGETPLIVASKY 144 (192)
T ss_dssp C-SSCCCTTCCCHHHHHHHH
T ss_pred C-CCCCCCCCCCHHHHHHHc
Confidence 8 778888888888887665
No 52
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=98.96 E-value=4.4e-11 Score=106.33 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=52.3
Q ss_pred ccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
++..|+.+||+.|+++|+++|.+|..|+|+||+|++.|+.++++.|+++|++ ++..|..|.|+||+|...
T Consensus 74 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 4455677777777777777777777777777777777777777777777777 777777777777776443
No 53
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.95 E-value=5.6e-11 Score=105.69 Aligned_cols=65 Identities=8% Similarity=0.100 Sum_probs=53.2
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+.++|+.||+.|+++|.+|..++|+||+|+. |+.++++.|++.|++ ++..|..|.|+||+|....
T Consensus 17 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 17 DLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 3888888888888888888888888888888 888888888888888 7788888888888887653
No 54
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.95 E-value=6.4e-11 Score=111.24 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=33.7
Q ss_pred CchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 261 GSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
|+.+||+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|+| +++.|..|.|+||+|
T Consensus 161 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 223 (241)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTC
T ss_pred CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence 445555555555555555555555555555555555555555555555 555555555555554
No 55
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.95 E-value=5.6e-11 Score=115.23 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=71.6
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccc--------------cccceEEEEeccC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSG--------------VQKFRVKLLAESG 294 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~--------------~~kTpLHlAa~~g 294 (570)
.|.|+||+|+..+. .+||+.||++||++|.++. .|+||||+|++.|
T Consensus 100 ~g~tpL~~A~~~g~--------------------~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g 159 (273)
T 2pnn_A 100 KGQTALHIAIERRN--------------------MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159 (273)
T ss_dssp TTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcC
Confidence 68899999887654 9999999999999999997 7999999999999
Q ss_pred CchHHHHHHH---cCCCCCcccCCCCCceeeeecc
Q 008333 295 GQSTMDVLCQ---IGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 295 ~~~iv~vLlq---~Gadgv~~lD~~gnn~LhIApL 326 (570)
+.+++++|++ .|++ +++.|.+|.|+||+|..
T Consensus 160 ~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~ 193 (273)
T 2pnn_A 160 QLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVE 193 (273)
T ss_dssp CHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHH
Confidence 9999999999 9999 99999999999999865
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.94 E-value=4.9e-11 Score=107.58 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=68.8
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcc-cccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTH-QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~-vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
+.++||+|+..+. .++|+.||+.|++ +|.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 2 ~~~~L~~A~~~g~--------------------~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 61 (172)
T 3v30_A 2 DSLSIHQLAAQGE--------------------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61 (172)
T ss_dssp --CCHHHHHHTTC--------------------HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred chhhHHHHHHcCC--------------------HHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3577888776554 8999999999987 899999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.++||+|....
T Consensus 62 -~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 62 -PHILAKERESALSLASTGG 80 (172)
T ss_dssp -TTCCCTTCCCHHHHHHHTT
T ss_pred -chhhcccCCCHHHHHHHCC
Confidence 9999999999999998774
No 57
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.94 E-value=2e-11 Score=115.11 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=66.2
Q ss_pred CccCCCchhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 256 SSVGSGSSKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 256 ~~~~~g~~~iVr~Ll~a-gA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++..|+.+||+.||+. |+++|.+|..|+||||+|++.|+.+++++|++.|++ +++.|.+|.|+||+|...
T Consensus 112 ~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 183 (222)
T 3ehr_A 112 WACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNA 183 (222)
T ss_dssp HHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSH
T ss_pred HHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcch
Confidence 35677899999999999 999999999999999999999999999999999999 999999999999998543
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.94 E-value=5.9e-11 Score=107.48 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=54.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|++
T Consensus 46 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 105 (169)
T 2y1l_E 46 SGWTPLHLAAFNGH--------------------LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105 (169)
T ss_dssp TSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45677887765443 6677777777777777777777777777777777777777777777
Q ss_pred CCcccCCCCCceeeeeccc
Q 008333 309 GIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe 327 (570)
++..|.+|.|+||+|...
T Consensus 106 -~~~~~~~g~t~L~~A~~~ 123 (169)
T 2y1l_E 106 -VNANDMEGHTPLHLAAMF 123 (169)
T ss_dssp -TTCCCTTSCCHHHHHHHT
T ss_pred -CCCCCCCCCCHHHHHHHc
Confidence 666677777777776655
No 59
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=98.94 E-value=6.7e-11 Score=117.00 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=79.0
Q ss_pred CCCCCCCccccccccCCc----------ccCCCCcCC---CCccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008333 228 GTVPKSSNSTLFDDYGRS----------ISFPSAKDS---RSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~----------~~~~~~~~~---~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g 294 (570)
..|.|+||+|+..+.-.. +........ -.++..++.+||+.||..|+++|.+|..|+||||+|++.|
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence 457899999998764222 111111110 0245567899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 295 GQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 295 ~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+.++|++|++.|+| ++..|..|.|+||+|....
T Consensus 164 ~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 164 HHELVALLLQHGAS-INASNNKGNTALHEAVIEK 196 (269)
T ss_dssp CGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred CHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcC
Confidence 99999999999999 9999999999999997664
No 60
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.94 E-value=5e-11 Score=120.29 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=73.4
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
...|.|+||+|+.... .|+.+||+.||+.||++|.+|..|+||||+|+..|+.+++++|++.|
T Consensus 187 ~~~g~t~Lh~A~~~~~-----------------~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g 249 (301)
T 2b0o_E 187 QAPEELVLHLAVKVAN-----------------QASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249 (301)
T ss_dssp CSCEECHHHHHHHTCC-----------------TTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHhcc-----------------cCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3456788888886521 25699999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe 327 (570)
+| +++.|.+|.|+||+|...
T Consensus 250 ad-~~~~d~~G~TpL~~A~~~ 269 (301)
T 2b0o_E 250 AL-VGTVNEAGETALDIARKK 269 (301)
T ss_dssp CC-CSCCCTTSCCHHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHc
Confidence 99 999999999999998544
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.93 E-value=8.1e-11 Score=105.65 Aligned_cols=79 Identities=13% Similarity=0.048 Sum_probs=64.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
|.|.|+||+|+..+. .++|+.||+.|+++|.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 1 G~~~t~L~~A~~~g~--------------------~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 60 (167)
T 3v31_A 1 GANSLSVHQLAAQGE--------------------MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60 (167)
T ss_dssp CTTCCCHHHHHHTTC--------------------HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCcchHHHHHHCCC--------------------HHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 678899999876554 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|.++||+|...
T Consensus 61 ~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 61 D-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp C-TTCCCTTCCCHHHHHHHH
T ss_pred C-CCCcCCCCCcHHHHHHHc
Confidence 8 778888888888887554
No 62
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.93 E-value=5.6e-11 Score=105.29 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=54.6
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
.++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|....
T Consensus 48 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 112 (156)
T 1bd8_A 48 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEG 112 (156)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhC
Confidence 7888888888888888888888888888888888888888888888 8888888888888887653
No 63
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.93 E-value=7.4e-11 Score=110.94 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=64.9
Q ss_pred ccCCCchhHhhhcccCCcccccccc-------------cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeee
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSG-------------VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRI 323 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~-------------~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhI 323 (570)
++..|+.+||+.||++|++++.++. .|+|+||+|++.|+.+++++|++.|+| ++..|.+|.|+||+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 3455679999999999999999876 799999999999999999999999999 99999999999999
Q ss_pred ecccc
Q 008333 324 YPLEN 328 (570)
Q Consensus 324 ApLe~ 328 (570)
|....
T Consensus 161 A~~~~ 165 (232)
T 2rfa_A 161 LILQP 165 (232)
T ss_dssp HHTCS
T ss_pred HHHcC
Confidence 97664
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.93 E-value=9.9e-11 Score=112.95 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=40.1
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 34 ~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 34 LEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASC 97 (229)
T ss_dssp HHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666 666666666666666554
No 65
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.92 E-value=1.2e-10 Score=103.07 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=38.9
Q ss_pred hhHhhhcccC-CcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 263 SKIVRAVPKV-DTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 263 ~~iVr~Ll~a-gA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.++|+.||.. +.++|.+|..|+|+||+ +..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 15 ~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 15 VQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 6666666655 23666666666666666 666666666666666666 666666666666666554
No 66
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.92 E-value=6.8e-11 Score=113.85 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=63.0
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
...|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.+++++|++.|
T Consensus 121 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 180 (253)
T 1yyh_A 121 MHDGTTPLILAARLAV--------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180 (253)
T ss_dssp CTTCCCHHHHHHHHTC--------------------SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHcCh--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 3467899999887654 67888888888888888888888888888888888888888888
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe 327 (570)
++ +++.|..|.|+||+|...
T Consensus 181 a~-~~~~~~~g~tpL~~A~~~ 200 (253)
T 1yyh_A 181 AN-KDMQNNREETPLFLAARE 200 (253)
T ss_dssp CC-TTCCCTTSCCHHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHC
Confidence 88 777788888888887655
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.92 E-value=8.3e-11 Score=106.50 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=72.3
Q ss_pred cCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH
Q 008333 225 GARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ 304 (570)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq 304 (570)
.....+.++|++|+..+. .++|+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++
T Consensus 9 ~~~~~~~~~l~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 68 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGR--------------------DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68 (169)
T ss_dssp ----CHHHHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcccchHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 333445567888776654 999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCCceeeeecccc
Q 008333 305 IGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 305 ~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
.|++ ++..|..|.++||+|....
T Consensus 69 ~g~~-~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 69 NGAD-VNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred cCCC-CCccCCCCCCHHHHHHHcC
Confidence 9999 9999999999999998764
No 68
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.91 E-value=1.6e-10 Score=97.87 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.+++++|+++|++
T Consensus 41 ~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 100 (115)
T 2l6b_A 41 DGNTPLHLAAKNGH--------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100 (115)
T ss_dssp SSCCTTHHHHTTTC--------------------HHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSS
T ss_pred CCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 56799999887654 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCce
Q 008333 309 GIRMLDPNTSRT 320 (570)
Q Consensus 309 gv~~lD~~gnn~ 320 (570)
++..+..+.++
T Consensus 101 -~n~~~~~~~~~ 111 (115)
T 2l6b_A 101 -VNARSWGSSHH 111 (115)
T ss_dssp -HHHHSCCCC--
T ss_pred -CCcCCcccccc
Confidence 98888887654
No 69
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.91 E-value=1.3e-10 Score=104.13 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=71.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..+.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+ .|+.++++.|++.|+
T Consensus 10 ~~~~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~ 68 (156)
T 1bi7_B 10 EPSADWLATAAARGR--------------------VEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68 (156)
T ss_dssp CCSTTHHHHHHHHTC--------------------HHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred ccchHHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC
Confidence 456788999877665 99999999999999999999999999986 889999999999999
Q ss_pred CCCcccCCCCCc-eeeeecccc
Q 008333 308 DGIRMLDPNTSR-TLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn-~LhIApLe~ 328 (570)
+ ++..|..|.+ +||+|....
T Consensus 69 ~-~~~~d~~g~ttpL~~A~~~~ 89 (156)
T 1bi7_B 69 E-PNCADPATLTRPVHDAAREG 89 (156)
T ss_dssp C-CCCCCTTTCCCHHHHHHHHT
T ss_pred C-CCCcCCCCCcHHHHHHHHCC
Confidence 9 9999999999 999986553
No 70
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.91 E-value=9.9e-11 Score=115.24 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=57.3
Q ss_pred CcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHc
Q 008333 226 ARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (570)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~ 305 (570)
....+.|+||+|+.... .+..+||+.|++.|+++|.+|..|+|+||+|++.|+.+++++|++.
T Consensus 207 ~~~~~~t~L~~A~~~~~-----------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 269 (351)
T 3utm_A 207 QPQSHETALHCAVASLH-----------------PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH 269 (351)
T ss_dssp CTTTCCCHHHHHHHCCS-----------------TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHhC-----------------ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 34567788998887643 2346667777777777777777777777777777766777777777
Q ss_pred CCCCCcccCCCCCceeeeeccc
Q 008333 306 GLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 306 Gadgv~~lD~~gnn~LhIApLe 327 (570)
|++ ++..|..|.|+||+|...
T Consensus 270 ga~-~n~~d~~g~t~L~~A~~~ 290 (351)
T 3utm_A 270 GAK-MNALDSLGQTALHRAALA 290 (351)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHH
T ss_pred CCC-CCCcCCCCCCHHHHHHHc
Confidence 776 666677777777766555
No 71
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.91 E-value=8.9e-11 Score=99.08 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=34.6
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeee
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIY 324 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIA 324 (570)
.++|+.|++.|++++.+|..++|+||+|+..|+.++++.|++.|++ ++..|..|.++||+|
T Consensus 48 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A 108 (126)
T 1n0r_A 48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLA 108 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHH
Confidence 5555555555555555555555555555555555555555555555 555555555555554
No 72
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.91 E-value=1.2e-10 Score=109.73 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=49.0
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.|++.|+++|.+|..++|+||+|++.|+.++++.|++.|+
T Consensus 109 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 168 (237)
T 3b7b_A 109 DGGWTPMIWATEYKH--------------------VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168 (237)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 457788888876543 556666666666666666666666666666666666666666666
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|.|+||+|...
T Consensus 169 ~-~~~~~~~g~t~L~~A~~~ 187 (237)
T 3b7b_A 169 D-LHAVNIHGDSPLHIAARE 187 (237)
T ss_dssp C-TTCCCTTCCCHHHHHHHT
T ss_pred C-CCCcCCCCCCHHHHHHHh
Confidence 5 555566666666665544
No 73
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.90 E-value=8.9e-11 Score=107.99 Aligned_cols=80 Identities=6% Similarity=-0.086 Sum_probs=74.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 33 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 92 (192)
T 2rfm_A 33 SYNRTPLMVACMLGM--------------------ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92 (192)
T ss_dssp TTCCCHHHHHHHHTC--------------------GGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence 357899999887765 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.|+||+|....
T Consensus 93 ~-~~~~~~~g~t~L~~A~~~~ 112 (192)
T 2rfm_A 93 N-VNTKDFSGKTPLMWSIIFG 112 (192)
T ss_dssp C-TTCCCTTSCCHHHHHHHHT
T ss_pred C-CCCCCCCCCcHHHHHHHcC
Confidence 9 9999999999999998763
No 74
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.90 E-value=8.9e-11 Score=105.38 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=65.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+. .++|+.|++.|+++|.+|..+.|+||+|+..|+.++++.|++.|++
T Consensus 35 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 94 (167)
T 3v31_A 35 EGFTPLMWAAAHGQ--------------------IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94 (167)
T ss_dssp TSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHCCC--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence 56788999776543 8888888888888888888888888888888888888888888888
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.|+||+|....
T Consensus 95 -~~~~~~~g~t~L~~A~~~~ 113 (167)
T 3v31_A 95 -VNEYDWNGGTPLLYAVHGN 113 (167)
T ss_dssp -TTCCCTTSCCHHHHHHHTT
T ss_pred -CCcCCCCCCCHHHHHHHcC
Confidence 8888888888888887663
No 75
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.89 E-value=6.8e-11 Score=113.86 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=73.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCc-ccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA-~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
..|.|+||+|+..+. .+||+.|++.|+ +++.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 88 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (253)
T 1yyh_A 88 NMGRTPLHAAVSADA--------------------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147 (253)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcC
Confidence 567899999887654 899999999998 99999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe~ 328 (570)
++ ++..|..|.|+||+|....
T Consensus 148 ~~-~~~~d~~g~t~L~~A~~~~ 168 (253)
T 1yyh_A 148 AD-VNAVDDLGKSALHWAAAVN 168 (253)
T ss_dssp CC-TTCBCTTSCBHHHHHHHHT
T ss_pred CC-CCCcCCCCCCHHHHHHHcC
Confidence 99 9999999999999997653
No 76
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.88 E-value=1.2e-10 Score=112.92 Aligned_cols=79 Identities=8% Similarity=-0.014 Sum_probs=70.6
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
+|.|+||+|+..+. .++|+.||+.|+++|.+|..|.|+||+|++.|+.++++.|++.|++
T Consensus 2 ~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 61 (261)
T 2xai_A 2 SDWSPMHEAAIHGH--------------------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61 (261)
T ss_dssp --CCHHHHHHHHTC--------------------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 47899999887665 8999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.|+||+|....
T Consensus 62 -~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 62 -VNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp -TTCCCTTSCCHHHHHHHHT
T ss_pred -CCCCCCCCCCHHHHHHHcC
Confidence 9999999999999986653
No 77
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.87 E-value=1e-10 Score=98.76 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+. .++|+.|++.|++++.+|..++|+||+|+..|+.++++.|++.|++
T Consensus 1 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 60 (126)
T 1n0r_A 1 NGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60 (126)
T ss_dssp CCCCHHHHHHHHTC--------------------HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCccHHHHHHHcCc--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 36788999877654 9999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.|+||+|....
T Consensus 61 -~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 61 -VNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp -TTCCCTTSCCHHHHHHHTT
T ss_pred -CcccCCCCCcHHHHHHHcC
Confidence 9999999999999986653
No 78
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.87 E-value=1.6e-10 Score=120.95 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=53.9
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+.+||+.||.+||++|.+|..|+||||+|+..|+.+++++|+++|++ +++.|.+|.|+||+|...
T Consensus 247 ~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~ 311 (368)
T 3jue_A 247 SLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMET 311 (368)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHC
Confidence 47888888888888888888888888888888888888888888888 888888888888887444
No 79
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.87 E-value=7.2e-11 Score=114.38 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=69.4
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+ +.++|+.||. |+++|.+|..|+||||+|+..|+.++|++|++.|++
T Consensus 44 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 102 (244)
T 3ui2_A 44 EYETPWWTAARKA--------------------DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102 (244)
T ss_dssp HHHHHHHHHHTTT--------------------CHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 3457788866554 5999999999 999999999999999999999999999999999999
Q ss_pred CCcccC-CCCCceeeeecccc
Q 008333 309 GIRMLD-PNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD-~~gnn~LhIApLe~ 328 (570)
++..| ..|.|+||+|....
T Consensus 103 -~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 103 -LDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp -TTCCCSSSCCCHHHHHHHTT
T ss_pred -CCcCCCCCCCCHHHHHHHcC
Confidence 88888 88999999997664
No 80
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.87 E-value=6.7e-11 Score=113.38 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=70.2
Q ss_pred CCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhccc---CCcccccccccccceEEEEec--cCCch-------
Q 008333 230 VPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAE--SGGQS------- 297 (570)
Q Consensus 230 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~---agA~vn~kd~~~kTpLHlAa~--~g~~~------- 297 (570)
|.|+||+|+..+. .+||+.||+ +||++|.+|..|+||||+|++ .++.+
T Consensus 136 g~tpL~~A~~~~~--------------------~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 136 GELPLSLAACTKQ--------------------WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp CSSHHHHHHHTTC--------------------HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHcCC--------------------HHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 7899999887654 999999999 999999999999999999999 77777
Q ss_pred HHHHHHHcCCCCC-------cccCCCCCceeeeeccc
Q 008333 298 TMDVLCQIGLDGI-------RMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 298 iv~vLlq~Gadgv-------~~lD~~gnn~LhIApLe 327 (570)
++++|++.|++ + ++.|..|.|+||+|...
T Consensus 196 iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 196 MYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp HHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHh
Confidence 99999999999 7 88999999999998554
No 81
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.86 E-value=1.9e-10 Score=113.16 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=73.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.||+.|+++|.+|..|+||||+|+..|+.++++.|++.|+
T Consensus 56 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~ 115 (351)
T 3utm_A 56 GRKSTPLHLAAGYNR--------------------VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115 (351)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCC
Confidence 457889999876654 999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.|+||+|....
T Consensus 116 ~-~~~~~~~g~t~L~~A~~~~ 135 (351)
T 3utm_A 116 C-VNAMDLWQFTPLHEAASKN 135 (351)
T ss_dssp C-TTCCCTTCCCHHHHHHHTT
T ss_pred C-CCCCCCCCCCHHHHHHHcC
Confidence 9 9999999999999997653
No 82
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.86 E-value=8.4e-11 Score=113.46 Aligned_cols=96 Identities=9% Similarity=-0.022 Sum_probs=76.2
Q ss_pred CCCCCCCccccccc----------cCCcccCCCCcCCC---CccCCCchhHhhhcccCCcccccccccccceEEEEeccC
Q 008333 228 GTVPKSSNSTLFDD----------YGRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESG 294 (570)
Q Consensus 228 ~~~~~~~~~a~~~~----------~~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g 294 (570)
.++.|+||+|+..+ .|..|...+..... .++..|+.+||+.||+.||++|.+|..|+||||+|+..|
T Consensus 19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g 98 (229)
T 2vge_A 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98 (229)
T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred cchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 34556788877653 23333332221111 356678899999999999999999999999999999999
Q ss_pred CchHHHHHHHcCCCCCcccC-CCCCceeeee
Q 008333 295 GQSTMDVLCQIGLDGIRMLD-PNTSRTLRIY 324 (570)
Q Consensus 295 ~~~iv~vLlq~Gadgv~~lD-~~gnn~LhIA 324 (570)
+.+++++|++.|++ ++..| ..|.|+||+|
T Consensus 99 ~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 99 DTVICMALVQHGAA-IFATTLSDGATAFEKC 128 (229)
T ss_dssp CHHHHHHHHTTTCC-TTCCCSSTTCCTGGGC
T ss_pred CHHHHHHHHHcCCC-cccccCCCCCCHHHHH
Confidence 99999999999999 88886 6999999998
No 83
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.86 E-value=2.1e-10 Score=94.24 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.|++.||++|.+|..|+||||+|++.|+.++++.|++.|+
T Consensus 33 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 33 KNGRTPLHLAARNGH--------------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 356799999887654 999999999999999999999999999999999999999999998
Q ss_pred C
Q 008333 308 D 308 (570)
Q Consensus 308 d 308 (570)
+
T Consensus 93 ~ 93 (93)
T 1n0q_A 93 Y 93 (93)
T ss_dssp C
T ss_pred C
Confidence 6
No 84
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.85 E-value=2.1e-10 Score=118.33 Aligned_cols=79 Identities=9% Similarity=-0.006 Sum_probs=49.4
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.|+++|+++|.+|..|+|+||+|++.|+.++|+.|+++|+
T Consensus 276 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 335 (437)
T 1n11_A 276 KSGLTPLHLVAQEGH--------------------VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335 (437)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence 457788999876543 556666666666666666666666666666666666666666666
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
| ++..|..|.|+||+|...
T Consensus 336 d-~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 336 D-VNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp C-TTCCCTTSCCHHHHHHHT
T ss_pred C-CCCCCCCCCCHHHHHHHC
Confidence 6 555566666666665544
No 85
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.85 E-value=2.1e-10 Score=107.57 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=55.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.|++.|++++.+|..++|+||+|++.|+.++++.|++.|+
T Consensus 104 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 163 (231)
T 3aji_A 104 QNGCTPLHYAASKNR--------------------HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163 (231)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Confidence 346788998876553 667777777777777777777777777777777777777777777
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ ++..|..|.|+||+|...
T Consensus 164 ~-~~~~~~~g~t~L~~A~~~ 182 (231)
T 3aji_A 164 S-TNIQDTEGNTPLHLACDE 182 (231)
T ss_dssp C-SCCCCTTSCCHHHHHHHT
T ss_pred C-ccccCCCCCCHHHHHHHC
Confidence 6 666677777777776554
No 86
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.85 E-value=9.9e-11 Score=107.78 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=69.8
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+ +.++|+.||+ |+++|.+|..|+|+||+|+..|+.++++.|++.|++
T Consensus 43 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 101 (183)
T 3deo_A 43 EYETPWWTAARKA--------------------DEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 101 (183)
T ss_dssp HHHHHHHHHHHTT--------------------CHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcC--------------------CHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4457788877655 4999999999 999999999999999999999999999999999999
Q ss_pred CCcccC-CCCCceeeeecccc
Q 008333 309 GIRMLD-PNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD-~~gnn~LhIApLe~ 328 (570)
++..| ..|+|+||+|....
T Consensus 102 -~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 102 -LDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp -TTCCCSSSSCCHHHHHHHTT
T ss_pred -CCcCCCCCCCCHHHHHHhcC
Confidence 88888 89999999997653
No 87
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.84 E-value=2e-10 Score=115.89 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=41.1
Q ss_pred cCCCchhHhhhcccCCcc-----cccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 258 VGSGSSKIVRAVPKVDTH-----QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~-----vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+..|+.+||+.||++|++ +|.+|..|.|+||+|++.|+.++|++|++.|+| +++.|..|.|+||+|...
T Consensus 181 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~ 254 (364)
T 3ljn_A 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRA 254 (364)
T ss_dssp HHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred HHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHh
Confidence 344456666666666655 666666666666666666666666666666666 556666666666665444
No 88
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.84 E-value=9.4e-11 Score=112.35 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=70.7
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhccc---CCcccccccccccceEEEEeccCC---------
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAESGG--------- 295 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~---agA~vn~kd~~~kTpLHlAa~~g~--------- 295 (570)
..|.|+||+|+..+. .+||+.||+ .||++|.+|..|+||||+|++.++
T Consensus 138 ~~g~tpL~~A~~~g~--------------------~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~ 197 (260)
T 3jxi_A 138 YFGELPLSLAACTNQ--------------------PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197 (260)
T ss_dssp CSCSSHHHHHHHTTC--------------------HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred cCCCCHHHHHHHcCC--------------------HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence 457899999877654 999999999 999999999999999999998877
Q ss_pred chHHHHHHHcCCCCC-------cccCCCCCceeeeeccc
Q 008333 296 QSTMDVLCQIGLDGI-------RMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 296 ~~iv~vLlq~Gadgv-------~~lD~~gnn~LhIApLe 327 (570)
.+++++|++.|++ + ++.|..|.|+||+|...
T Consensus 198 ~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 198 TKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp HHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHc
Confidence 5899999999999 7 67999999999998554
No 89
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.84 E-value=2.3e-10 Score=107.63 Aligned_cols=79 Identities=8% Similarity=0.019 Sum_probs=70.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHH----HHHHH
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTM----DVLCQ 304 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv----~vLlq 304 (570)
.|.|+||+|+..+. .+||+.||++||++|.+|..|+||||+|++.|+.+++ ++|++
T Consensus 120 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~ 179 (232)
T 2rfa_A 120 YGEHPLSFAACVGS--------------------EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179 (232)
T ss_dssp CCSSHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHh
Confidence 57899999887654 8999999999999999999999999999999999887 99999
Q ss_pred cCCCCC-----cccCCCCCceeeeeccc
Q 008333 305 IGLDGI-----RMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 305 ~Gadgv-----~~lD~~gnn~LhIApLe 327 (570)
.|++.. ++.|..|.|+||+|...
T Consensus 180 ~g~~~~~~~~~~~~~~~g~tpl~~A~~~ 207 (232)
T 2rfa_A 180 YDGGDHLKSLELVPNNQGLTPFKLAGVE 207 (232)
T ss_dssp TTCSCSSCCGGGCCCTTSCCHHHHHHHH
T ss_pred cCCchhhhhhhccCCCCCCCHHHHHHHc
Confidence 999832 58899999999998544
No 90
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.84 E-value=2.2e-10 Score=106.96 Aligned_cols=80 Identities=9% Similarity=-0.049 Sum_probs=74.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC--cccccccccccceEEEEeccCCchHHHHHHHc
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD--THQDVKSGVQKFRVKLLAESGGQSTMDVLCQI 305 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag--A~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~ 305 (570)
..|.|+||+|+..+. .++|+.|++.| ++++.+|..|.|+||+|++.|+.++++.|++.
T Consensus 70 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 70 DSGWTPFHIACSVGN--------------------LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN 129 (228)
T ss_dssp TTSCCHHHHHHHHCC--------------------HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc
Confidence 467899999998764 89999999999 89999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCceeeeecccc
Q 008333 306 GLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 306 Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|++ ++..|..|.|+||+|....
T Consensus 130 g~~-~~~~~~~g~t~L~~A~~~~ 151 (228)
T 2dzn_A 130 GAS-VRIKDKFNQIPLHRAASVG 151 (228)
T ss_dssp TCC-SCCCCTTSCCHHHHHHHTT
T ss_pred CCC-ccccCCCCCCHHHHHHHcC
Confidence 999 9999999999999998764
No 91
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.83 E-value=2.6e-10 Score=110.97 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred chhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 262 SSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 262 ~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+.+||+.||++||++|.+|..|+||||+|+..|+.++++.|++.|++ ++..|..|.|+||+|...
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 149 (299)
T 1s70_B 85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEE 149 (299)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhc
Confidence 47777777777777777777777777777777777777777777777 767777777777776443
No 92
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.83 E-value=2.4e-10 Score=106.50 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=67.5
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..++|+||+|+..|+.++++.|++.|+
T Consensus 90 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 149 (223)
T 2f8y_A 90 HDGTTPLILAARLAV--------------------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149 (223)
T ss_dssp TTCCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHhCc--------------------HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 457789999887654 788888888888888888888888888888888888888888888
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.|+||+|....
T Consensus 150 ~-~~~~~~~g~t~L~~A~~~~ 169 (223)
T 2f8y_A 150 N-KDMQNNREETPLFLAAREG 169 (223)
T ss_dssp C-TTCCCTTCCCHHHHHHHHT
T ss_pred C-CCCcCCCCcCHHHHHHHcC
Confidence 8 8888888888888886653
No 93
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.82 E-value=2.3e-10 Score=107.67 Aligned_cols=80 Identities=10% Similarity=0.015 Sum_probs=72.8
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC-cccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag-A~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
..|.|+||+|+..+. .++|+.|++.| ++++.+|..|.|+||+|++.|+.++++.|++.|
T Consensus 75 ~~g~t~L~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 75 AEGSTCLHLAAKKGH--------------------YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHcCC--------------------HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 356789999886654 99999999999 899999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe~ 328 (570)
++ ++..|..|.++||+|....
T Consensus 135 ~~-~~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 135 SD-INIRDNEENICLHWAAFSG 155 (237)
T ss_dssp CC-TTCCCTTSCCHHHHHHHHC
T ss_pred CC-CCccCCCCCCHHHHHHHCC
Confidence 99 9999999999999987653
No 94
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.81 E-value=3.5e-10 Score=109.61 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=40.5
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
+..|.|+||+|+..+. .+||+.|++.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 98 ~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 98 ESDLASPIHEAARRGH--------------------VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp SCTTCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCc--------------------HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3457788998876543 44444444444444444444444444444444444444444444
Q ss_pred CCCCcccCCCCCceeeeecc
Q 008333 307 LDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApL 326 (570)
++ ++. |..|.|+||+|..
T Consensus 158 ~~-~~~-~~~g~t~Lh~A~~ 175 (261)
T 2xai_A 158 AD-VNQ-GKGQDSPLHAVAR 175 (261)
T ss_dssp CC-TTC-CBTTBCHHHHHHH
T ss_pred CC-CCC-CCCCCChHHHHHH
Confidence 44 332 4444444444443
No 95
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.80 E-value=4.7e-10 Score=110.72 Aligned_cols=84 Identities=8% Similarity=-0.004 Sum_probs=75.6
Q ss_pred ccCcCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHH
Q 008333 224 YGARGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLC 303 (570)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLl 303 (570)
++-...|.|+||+|+..+. .++|+.||+.|+++|.+|..|+|+||+|+..|+.++++.|+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 112 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGH--------------------QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCccCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence 3445667899999877664 99999999999999999999999999999999999999999
Q ss_pred HcCCCCCcccCCCCCceeeeecccc
Q 008333 304 QIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 304 q~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+.|++ ++..|..|.|+||+|....
T Consensus 113 ~~ga~-~~~~~~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 113 KHGAQ-VNGVTADWHTPLFNACVSG 136 (285)
T ss_dssp HTTCC-SSCCCTTCCCHHHHHHHHT
T ss_pred HCCCC-CCCCCCCCCCHHHHHHHcC
Confidence 99999 9999999999999986653
No 96
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.80 E-value=3.3e-10 Score=114.33 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=47.6
Q ss_pred ccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeec
Q 008333 275 HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 275 ~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIAp 325 (570)
++|.+|..|+||||+|++.|+.++|++|++.|+| +++.|.+|.|+||+|.
T Consensus 275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 324 (327)
T ss_dssp TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence 5888899999999999999999999999999999 9999999999999984
No 97
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.79 E-value=3e-10 Score=106.64 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=59.9
Q ss_pred cCCCchhHhhhcccCCccccccc-ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKS-GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd-~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
+..|+.++|+.|++.|++++.++ ..++|+||+|++.|+.++++.|++.|++ ++..|..|.|+||+|....
T Consensus 124 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 194 (241)
T 1k1a_A 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRG 194 (241)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 34556899999999999999888 7889999999999999999999999999 8888999999999886543
No 98
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.79 E-value=4.1e-10 Score=113.65 Aligned_cols=83 Identities=7% Similarity=0.002 Sum_probs=73.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+.+||+.||++||++|.+|..|+|+||+|++.|+.++++.|++.|+
T Consensus 136 ~~g~t~L~~A~~~g~------------------~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 136 CKGQTALHWCVGLGP------------------EYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp ESCCCHHHHHHHSCG------------------GGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHcCC------------------chHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 357899999887650 14899999999999999999999999999999999999999999998
Q ss_pred CC----CcccCCCCCceeeeecccc
Q 008333 308 DG----IRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dg----v~~lD~~gnn~LhIApLe~ 328 (570)
+- ++..|..|+|+||+|....
T Consensus 198 ~~~~~~~~~~~~~g~t~L~~A~~~g 222 (364)
T 3ljn_A 198 SKSSLRLDYANKQGNSHLHWAILIN 222 (364)
T ss_dssp CSSSCCTTCCCTTCCCTTHHHHTTT
T ss_pred ccccccccccCCCCCcHHHHHHHcC
Confidence 74 7788999999999997664
No 99
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.79 E-value=6.3e-10 Score=102.03 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=48.2
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcc-cCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVP-KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll-~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
..|.|+||+|+..+. .+||+.|+ ..+++++.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 70 ~~g~t~l~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 70 SISDSPYLYAGAQGR--------------------TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 345678888765543 56666666 555566666666666666666666666666666666
Q ss_pred -CCCCcccCCCCCceeeeec
Q 008333 307 -LDGIRMLDPNTSRTLRIYP 325 (570)
Q Consensus 307 -adgv~~lD~~gnn~LhIAp 325 (570)
++ ++..|..|.|+||+|.
T Consensus 130 ~~~-~~~~~~~g~t~L~~A~ 148 (201)
T 3hra_A 130 RED-IDFQNDFGYTALIEAV 148 (201)
T ss_dssp CCC-TTCCCTTSCCHHHHHH
T ss_pred CCC-cCCCCCCCCCHHHHHH
Confidence 55 6666666666666665
No 100
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.78 E-value=4.5e-10 Score=115.19 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=70.5
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCC-cccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVD-THQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~ag-A~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
.|.|+||+|+..+ +.+||+.||+.| +++|.+|..|+||||+|++.|+.++|++|+++|+
T Consensus 278 ~g~t~Lh~A~~~g--------------------~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 337 (373)
T 2fo1_E 278 KGRTALHYAAQVS--------------------NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337 (373)
T ss_dssp CCCCTHHHHHSSC--------------------CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHhC--------------------CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 5678888877554 499999999876 9999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe 327 (570)
+ +++.|..|.|+||+|...
T Consensus 338 d-~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 338 S-VEAVDATDHTARQLAQAN 356 (373)
T ss_dssp C-SSCCCSSSCCHHHHHHHT
T ss_pred C-ccCCCCCCCCHHHHHHHc
Confidence 9 999999999999998554
No 101
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.78 E-value=1.8e-10 Score=111.65 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=70.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhccc---CCcccccccccccceEEEEeccCC---------c
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPK---VDTHQDVKSGVQKFRVKLLAESGG---------Q 296 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~---agA~vn~kd~~~kTpLHlAa~~g~---------~ 296 (570)
.|.|+||+|+..+. .+||+.||+ .||++|.+|..|+||||+|++.|+ .
T Consensus 147 ~g~tpL~~A~~~g~--------------------~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 147 FGELPLSLAACTNQ--------------------LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp SCBSHHHHHHHTTC--------------------HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 57899999887654 999999999 999999999999999999999988 6
Q ss_pred hHHHHHHHcCCCCCc-------ccCCCCCceeeeeccc
Q 008333 297 STMDVLCQIGLDGIR-------MLDPNTSRTLRIYPLE 327 (570)
Q Consensus 297 ~iv~vLlq~Gadgv~-------~lD~~gnn~LhIApLe 327 (570)
+++++|++.|++ ++ +.|..|.|+||+|...
T Consensus 207 ~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 207 SMYNEILILGAK-LHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHhhhh-cccccccccccCCCCCCHHHHHHHh
Confidence 899999999999 75 5899999999998544
No 102
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.78 E-value=3.4e-10 Score=106.11 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=73.6
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||+.|++.|+++|.+|..|.|+||+|++.|+.++++.|++.|+
T Consensus 71 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 130 (231)
T 3aji_A 71 DAGWSPLHIAASAGX--------------------DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130 (231)
T ss_dssp TTSCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCH--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 457899999887654 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.++||+|....
T Consensus 131 ~-~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 131 N-PDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp C-TTCCCTTSCCHHHHHHHHT
T ss_pred C-CCCcCCCCCcHHHHHHHcC
Confidence 9 9999999999999997653
No 103
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.78 E-value=5e-10 Score=104.39 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=73.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCc-ccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDT-HQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA-~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
..|.|+||+|+..+. .+||+.|++.++ +++.++..++|+||+|++.|+.++++.|++.|
T Consensus 56 ~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 115 (223)
T 2f8y_A 56 NMGRTPLHAAVSADA--------------------QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115 (223)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcC
Confidence 457899999886554 999999999998 99999999999999999999999999999999
Q ss_pred CCCCcccCCCCCceeeeecccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe~ 328 (570)
++ ++..|..|.|+||+|....
T Consensus 116 ~~-~~~~~~~g~t~L~~A~~~~ 136 (223)
T 2f8y_A 116 AD-VNAVDDLGKSALHWAAAVN 136 (223)
T ss_dssp CC-TTCBCTTSCBHHHHHHHTT
T ss_pred CC-CcCcCCCCCcHHHHHHHcC
Confidence 99 9999999999999998764
No 104
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.77 E-value=3.7e-10 Score=111.68 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=49.3
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCC-Cceeeeeccc
Q 008333 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNT-SRTLRIYPLE 327 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~g-nn~LhIApLe 327 (570)
..|+.+||+.||++||++|.+|..|+||||+|++.|+.++++.|++.|++ ++..|..| .|+||+|...
T Consensus 71 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 71 TLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp TSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHc
Confidence 34457777777777777777777777777777777777777777777777 77777777 6777776554
No 105
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.76 E-value=7.7e-10 Score=109.14 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=50.6
Q ss_pred cCCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcC
Q 008333 227 RGTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIG 306 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~G 306 (570)
...|.|+||+|+..+. .+||+.||+.|+++|.+|..|+|+||+|++.|+.++++.|++.|
T Consensus 154 ~~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 154 ESDLASPIHEAARRGH--------------------VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp SCTTSCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHcCC--------------------HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 4457899999887654 56666666666666666666666666666666666666666666
Q ss_pred CCCCcccCCCCCceeeeeccc
Q 008333 307 LDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 307 adgv~~lD~~gnn~LhIApLe 327 (570)
++ ++. |..|.|+||+|...
T Consensus 214 a~-~~~-~~~g~t~L~~A~~~ 232 (285)
T 3d9h_A 214 AD-VNQ-GKGQDSPLHAVVRT 232 (285)
T ss_dssp CC-TTC-CBTTBCHHHHHHHT
T ss_pred CC-CCC-CCCCCCHHHHHHHc
Confidence 66 442 55666666665544
No 106
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.76 E-value=6.1e-10 Score=110.07 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .++|+.||+.|+++|.+| |+|+||+|++.|+.++++.|++.|+
T Consensus 29 ~~g~t~L~~A~~~g~--------------------~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga 86 (285)
T 3kea_A 29 VHGHSASYYAIADNN--------------------VRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGL 86 (285)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 467799999887654 999999999999999995 8999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.|+||+|....
T Consensus 87 ~-~~~~d~~g~t~L~~A~~~g 106 (285)
T 3kea_A 87 D-DSQFDDKGNTALYYAVDSG 106 (285)
T ss_dssp C-TTCCCTTSCCHHHHHHHTT
T ss_pred C-CCCcCCCCCcHHHHHHHcC
Confidence 9 9999999999999997664
No 107
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.73 E-value=8.6e-10 Score=101.14 Aligned_cols=79 Identities=8% Similarity=0.063 Sum_probs=67.2
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGL 307 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq-~Ga 307 (570)
.|.|+||+|+..+. .+||+.||++|+++|.+|..++|+||+|++.|+.++++.|++ .|+
T Consensus 38 ~g~t~L~~A~~~~~--------------------~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 97 (201)
T 3hra_A 38 EGNTPLNIAVHNND--------------------IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97 (201)
T ss_dssp TSCCHHHHHHHHTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc
Confidence 46788888776554 899999999999999999999999999999999999999994 556
Q ss_pred CCCcccCCCCCceeeeecccc
Q 008333 308 DGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApLe~ 328 (570)
+ ++..|..|.++||+|....
T Consensus 98 ~-~~~~~~~g~t~L~~A~~~~ 117 (201)
T 3hra_A 98 D-LNKHNRYGGNALIPAAEKG 117 (201)
T ss_dssp C-TTCCCTTSCCSHHHHHHTT
T ss_pred c-cccccCCCCcHHHHHHHcC
Confidence 6 8889999999999986653
No 108
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.72 E-value=7.6e-10 Score=114.19 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=73.0
Q ss_pred cCCCCCCCcccccccc----------CCcccCCCCcCCC---CccCCCchhHhhhcccCCcccccccccccceEEEEecc
Q 008333 227 RGTVPKSSNSTLFDDY----------GRSISFPSAKDSR---SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAES 293 (570)
Q Consensus 227 ~~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~---~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~ 293 (570)
...|.|+||+|++.+. |..+...+..... .++..|+.+||+.|++.|+++|.+|..++|+||+|++.
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 3567899999998653 3333322221111 35667788888888888888888888888888888888
Q ss_pred CCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 294 GGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 294 g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|+.++++.|+++|++ ++..|..|.++||+|....
T Consensus 91 g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcC
Confidence 888888888888888 8888888888888886653
No 109
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.71 E-value=1.4e-09 Score=108.51 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=76.7
Q ss_pred CCCCCCCccccccc-----------cCCcccCCCCcCCC-------CccCCCchhHhhhcccCCcccccccccccceEEE
Q 008333 228 GTVPKSSNSTLFDD-----------YGRSISFPSAKDSR-------SSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKL 289 (570)
Q Consensus 228 ~~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~-------~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHl 289 (570)
..|.|+||+|+..+ +|..|......... .+...+.+.||++||++||++|.+|..|+||||+
T Consensus 166 ~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~ 245 (337)
T 4g8k_A 166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 245 (337)
T ss_dssp TCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred CCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 45678999998754 34433332221110 1122334679999999999999999999999999
Q ss_pred EeccCCchHHHHHHHc-CCCCCcccCCCCCceeeeecccc
Q 008333 290 LAESGGQSTMDVLCQI-GLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 290 Aa~~g~~~iv~vLlq~-Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|++.|+.+++..|++. |++ ++..|.+|.|+||+|....
T Consensus 246 a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g 284 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELK 284 (337)
T ss_dssp HHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTT
T ss_pred HHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcC
Confidence 9999999999999985 788 9999999999999996653
No 110
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.70 E-value=1.1e-09 Score=104.44 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=70.6
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCC
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLD 308 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gad 308 (570)
.|.|+||+|+..+ +.+||+.||+.|++++.+|..|+|+||+|++.|+.++++.|++.|++
T Consensus 38 ~g~t~L~~A~~~g--------------------~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 38 GGWTPLHNAVQMS--------------------REDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp TCCCHHHHHHHTT--------------------CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcC--------------------CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4568888877654 48999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCceeeeecccc
Q 008333 309 GIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 309 gv~~lD~~gnn~LhIApLe~ 328 (570)
++..|..|.++||+|....
T Consensus 98 -~~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 98 -VNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp -TTCBCTTCCBHHHHHHHTT
T ss_pred -CCccCcccCCHHHHHHHhC
Confidence 9899999999999986653
No 111
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.69 E-value=1.6e-09 Score=109.33 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=63.1
Q ss_pred CCchhHhhhcccCCccccc-ccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 260 SGSSKIVRAVPKVDTHQDV-KSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~-kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
.+..+|++.|+..|+++|. +|..|+||||+|++.|+.++|++|++.|++ ++..|..|.|+||+|...
T Consensus 107 ~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp HHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHS
T ss_pred hhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHh
Confidence 3458999999999999999 899999999999999999999999999999 999999999999999764
No 112
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.69 E-value=1.1e-09 Score=107.87 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred CCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 259 GSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
..|+.++|+.|++.|++.+..|..|+||||+|++.|+.+++++|++.|+| +++.|.+|.|+||+|....
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g 227 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHG 227 (276)
T ss_dssp SHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred hhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCC
Confidence 45679999999999999999999999999999999999999999999999 9999999999999986653
No 113
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.67 E-value=1.1e-09 Score=110.50 Aligned_cols=72 Identities=6% Similarity=-0.037 Sum_probs=63.1
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||++||++||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 224 ~~G~TpLh~A~~~g~--------------------~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 224 ADGNTALHYAALYNQ--------------------PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 467899999887665 899999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeecc
Q 008333 308 DGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 308 dgv~~lD~~gnn~LhIApL 326 (570)
+ .|.|+||+|..
T Consensus 284 ~-------~g~tpLh~A~~ 295 (301)
T 2b0o_E 284 G-------TFAFPLHVDYS 295 (301)
T ss_dssp H-------TTSSCCC----
T ss_pred C-------CCCChhHHHHh
Confidence 8 57899999843
No 114
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.67 E-value=1.8e-09 Score=102.22 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCC-----CcccCCCCCceeeeecccc
Q 008333 260 SGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDG-----IRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 260 ~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadg-----v~~lD~~gnn~LhIApLe~ 328 (570)
.|+.+||+.||+.||++|.+|..|+|+||+|++.|+.++++.|++.|++. ++..|..|.++||+|....
T Consensus 55 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 55 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128 (236)
T ss_dssp TTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC
Confidence 34589999999999999999999999999999999999999999998652 4567888999999986653
No 115
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.67 E-value=1.2e-09 Score=112.09 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=64.1
Q ss_pred ccCCCchhHhhhcc--------cCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 257 SVGSGSSKIVRAVP--------KVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll--------~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
++..|+.++|+.|| +.||++|.+|..|+||||+|+..|+.++|++|++.|++ ++..|..|.|+||+|....
T Consensus 132 Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g 210 (373)
T 2fo1_E 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANR 210 (373)
T ss_dssp HHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCC
Confidence 45666788888776 89999999999999999999999999999999999999 9999999999999997653
No 116
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.66 E-value=1.1e-09 Score=114.60 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=63.4
Q ss_pred CchhHhhhcccCCccccccc--ccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 261 GSSKIVRAVPKVDTHQDVKS--GVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 261 g~~~iVr~Ll~agA~vn~kd--~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
|+.++|+.||+.||++|.++ ..+.|+||+|+..|+.++|++|+++|++ +++.|..|+|+||+|....
T Consensus 211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g 279 (368)
T 3jue_A 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHATILG 279 (368)
T ss_dssp CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 56999999999999999998 8999999999999999999999999999 9999999999999997664
No 117
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.66 E-value=1.8e-09 Score=107.77 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=59.9
Q ss_pred ccCCCchhHhhhcccCCcccccccc-cccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDVKSG-VQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~kd~-~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
+|..|+.+||+.||++||++|.++. .|+||||+|++.|+.++|++|+++|++ ++..|..+.++++.+...
T Consensus 32 Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc-hhhhccCCCchhHHHHhc
Confidence 3455569999999999999999976 589999999999999999999999999 878787777777665433
No 118
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.64 E-value=2.6e-09 Score=101.73 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred hhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHH-cCCCCCcccCCCCCceeeeecc
Q 008333 263 SKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQ-IGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 263 ~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq-~Gadgv~~lD~~gnn~LhIApL 326 (570)
.+|++.|++.|+++|.+|..|+||||+|++.|+.++++.|++ .|++ ++..|..|.|+||+|..
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVE 262 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHH
Confidence 566777777777777777777777777777776677777776 6666 66667777777766643
No 119
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.53 E-value=6.3e-09 Score=111.46 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=63.5
Q ss_pred CCCchhHhhhcccCCcccccc------cccccceEEEE---eccCCchHHHHHHHcCCCCCcccCCCCCceeeeecccc
Q 008333 259 GSGSSKIVRAVPKVDTHQDVK------SGVQKFRVKLL---AESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLEN 328 (570)
Q Consensus 259 ~~g~~~iVr~Ll~agA~vn~k------d~~~kTpLHlA---a~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe~ 328 (570)
..|+.++|+.||..||++|.+ |..|.|+||+| +..|+.+++++|+++|+| +++.|.+|+|+||+|....
T Consensus 141 ~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpLh~A~~~g 218 (497)
T 3lvq_E 141 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYN 218 (497)
T ss_dssp HHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHHHHHTTTT
T ss_pred hccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcC
Confidence 344599999999999999988 88999999999 669999999999999999 9999999999999998774
No 120
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.53 E-value=5.5e-09 Score=97.15 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=48.3
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCC-chHHHHHHHcC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGG-QSTMDVLCQIG 306 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~-~~iv~vLlq~G 306 (570)
..|.++||+|+..+. .+||+.|++.|++++.+|..++|+||+|+..++ ..++++|++.|
T Consensus 107 ~~g~t~l~~A~~~~~--------------------~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~ 166 (240)
T 3eu9_A 107 GEGCSCIHLAAQFGH--------------------TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166 (240)
T ss_dssp TTSCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTT
T ss_pred CCCCCHHHHHHHcCH--------------------HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcC
Confidence 456678888765443 566666666666666666666666666664444 45566666666
Q ss_pred CCCCcccCC-CCCceeeeeccc
Q 008333 307 LDGIRMLDP-NTSRTLRIYPLE 327 (570)
Q Consensus 307 adgv~~lD~-~gnn~LhIApLe 327 (570)
++ ++..+. .|.++||+|...
T Consensus 167 ~~-~~~~~~~~g~t~L~~A~~~ 187 (240)
T 3eu9_A 167 VS-VNLGDKYHKNTALHWAVLA 187 (240)
T ss_dssp CC-TTCCCTTTCCCHHHHHHHH
T ss_pred CC-cchhhccCCCcHHHHHHHc
Confidence 66 555554 566666665544
No 121
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.51 E-value=1.3e-08 Score=101.28 Aligned_cols=61 Identities=7% Similarity=0.064 Sum_probs=56.9
Q ss_pred CCCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCC
Q 008333 228 GTVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGL 307 (570)
Q Consensus 228 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Ga 307 (570)
..|.|+||+|+..+. .+||++||++||++|.+|..|+||||+|++.|+.+++++|++.|+
T Consensus 203 ~~g~TpLh~A~~~g~--------------------~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 203 GKGSTALHYCCLTDN--------------------AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp TTCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 467899999887654 899999999999999999999999999999999999999999999
Q ss_pred C
Q 008333 308 D 308 (570)
Q Consensus 308 d 308 (570)
+
T Consensus 263 ~ 263 (278)
T 1dcq_A 263 G 263 (278)
T ss_dssp T
T ss_pred C
Confidence 7
No 122
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.50 E-value=8.4e-09 Score=95.94 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=54.4
Q ss_pred cCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHHHHcCCCCCcccCCCCCceeeeecc
Q 008333 258 VGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPL 326 (570)
Q Consensus 258 ~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApL 326 (570)
+..|+.+||+.|++.|++++.+|..+.|+||+|+..|+.++++.|++.|++ ++..|..|.++||+|..
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~ 151 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAY 151 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHH
Confidence 344558888888888888888888888888888888888888888888888 77888888888888753
No 123
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.18 E-value=1.2e-07 Score=80.52 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=49.1
Q ss_pred CCCCCCccccccccCCcccCCCCcCCCCccCCCchhHhhhcccCCcccccccccccceEEEEeccCCchHHHHH
Q 008333 229 TVPKSSNSTLFDDYGRSISFPSAKDSRSSVGSGSSKIVRAVPKVDTHQDVKSGVQKFRVKLLAESGGQSTMDVL 302 (570)
Q Consensus 229 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~iVr~Ll~agA~vn~kd~~~kTpLHlAa~~g~~~iv~vL 302 (570)
.|.|+||+|+..+. .+||+.||++||++|.+|..|+|+||+|++.|+.+++++|
T Consensus 56 ~g~tpLh~A~~~~~--------------------~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 56 NGSTPLHLAARNGH--------------------LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TCCCHHHHHHHTTC--------------------HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCHHHHHHHcCC--------------------HHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 46799999887664 9999999999999999999999999999999999988876
No 124
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.14 E-value=1.7e-08 Score=105.65 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=58.2
Q ss_pred ccCCCchhHhhhcccCCcc---cccccccccceEEEEeccCCchHHHHHHHcCCCCCcc--cCCCCCceeeeec-ccc
Q 008333 257 SVGSGSSKIVRAVPKVDTH---QDVKSGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRM--LDPNTSRTLRIYP-LEN 328 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~---vn~kd~~~kTpLHlAa~~g~~~iv~vLlq~Gadgv~~--lD~~gnn~LhIAp-Le~ 328 (570)
++..|+.+||+.|++.||+ +++++.. +||||+|++.|+.++|+.|+++|++ ++. .|..|.|+||+|. ...
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G 210 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRG 210 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCC
Confidence 4567789999999999986 3444444 9999999999999999999999999 766 8889999999997 553
No 125
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=97.84 E-value=1.7e-07 Score=98.14 Aligned_cols=63 Identities=6% Similarity=0.036 Sum_probs=55.9
Q ss_pred ccCCCchhHhhhcccCCccccc--ccccccceEEEEe-ccCCchHHHHHHHcCCCCCcccCCCCCceeeeeccc
Q 008333 257 SVGSGSSKIVRAVPKVDTHQDV--KSGVQKFRVKLLA-ESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLE 327 (570)
Q Consensus 257 ~~~~g~~~iVr~Ll~agA~vn~--kd~~~kTpLHlAa-~~g~~~iv~vLlq~Gadgv~~lD~~gnn~LhIApLe 327 (570)
++..|+.+||+.||++||+++. +|..|+||||+|+ +.|+.++|+.|++.|++ +.++||+|...
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~ 235 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEY 235 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTT
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHC
Confidence 4667889999999999999998 8999999999999 99999999999998754 67888887554
No 126
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.67 E-value=1.3e-05 Score=84.05 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=39.6
Q ss_pred CCCCcccCCCCccccccCccc-cCccccccccccCceeccCCCcc
Q 008333 418 EKDHWVPDEAVSKCTACGTDF-SAFVRKHHCRNCGDIFCDKCTHG 461 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~F-sl~~RKHHCR~CG~vfC~~CS~~ 461 (570)
+...|..+.....|+.|+..| ++++|+||||.||.++|..|+..
T Consensus 347 h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 347 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 356799999999999999999 58999999999999999999863
No 127
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=95.19 E-value=0.0077 Score=66.37 Aligned_cols=43 Identities=19% Similarity=0.402 Sum_probs=37.8
Q ss_pred CCCcccCCCCccccccCccc-cCccccccccccCceeccCCCcc
Q 008333 419 KDHWVPDEAVSKCTACGTDF-SAFVRKHHCRNCGDIFCDKCTHG 461 (570)
Q Consensus 419 ~~~Wvpd~~~~~C~~C~~~F-sl~~RKHHCR~CG~vfC~~CS~~ 461 (570)
.-.|........|+.|+..| +++.+.|||+.||.++|.+|...
T Consensus 520 ~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 520 DFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred ceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 44577778889999999987 88999999999999999999864
No 128
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=94.08 E-value=0.04 Score=46.75 Aligned_cols=37 Identities=24% Similarity=0.652 Sum_probs=28.5
Q ss_pred CCcccC-CCCccccccCccccCccccccccccCceeccCC
Q 008333 420 DHWVPD-EAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 420 ~~Wvpd-~~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
..|+.. .....|..|+++.++++ ..+|| ||.+||.+|
T Consensus 16 ~~~~~~k~~~~rC~~C~kkvgl~~-~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 16 APLQTKKKIMKHCFLCGKKTGLAT-SFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCCCCCCCCBCSSSCCBCSSSS-CEECT-TCCEECTTT
T ss_pred cccccCcccCccchhhCCeecccC-CeEcC-CCCEecccC
Confidence 345533 34679999999988863 58998 999999886
No 129
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=93.99 E-value=0.026 Score=52.67 Aligned_cols=49 Identities=20% Similarity=0.664 Sum_probs=41.1
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~-~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
...|..|.+.|+++ ++.+-|..|..-||.+|... ++ ....=+|..|.+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP----EEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS----SSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC----CCCcEeeHHHHHH
Confidence 56999999999976 89999999999999999842 22 3467899999985
No 130
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=93.93 E-value=0.04 Score=50.33 Aligned_cols=54 Identities=24% Similarity=0.688 Sum_probs=43.2
Q ss_pred CCccccccCccccC-ccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 427 AVSKCTACGTDFSA-FVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl-~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
....|..|.+.|++ .++.|-|..|..-||.+|.... . ....+..=+|..|.+.-
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~-~~~~~~~W~C~vC~k~r 108 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S-NNRPHPVWLCKICLEQR 108 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C-CSSSSCCEEEHHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C-CCCCccceechhhHHHH
Confidence 36799999999975 4889999999999999997643 1 12346779999999853
No 131
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=93.68 E-value=0.046 Score=45.23 Aligned_cols=28 Identities=29% Similarity=0.922 Sum_probs=24.7
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|..|+++..++ ...|| ||.+||.+|
T Consensus 25 ~~RC~~C~kkvgL~--~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT--GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCBCSSSCCBCTTT--CEECT-TSCEECTTT
T ss_pred CccchhhcCccccc--ceEec-cCCEecccc
Confidence 67899999998887 68995 999999886
No 132
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=93.66 E-value=0.041 Score=44.36 Aligned_cols=28 Identities=32% Similarity=0.855 Sum_probs=24.4
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|..|+++..++ ...|| ||.+||..|
T Consensus 15 ~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred CCcChhhCCccCcc--CEEee-cCCEecccc
Confidence 56899999998877 68996 999999886
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=93.01 E-value=0.062 Score=44.93 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.1
Q ss_pred CcccccccccCcccccccccccCCCCCccccCCCCCccccccC
Q 008333 528 SGRRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 528 s~~~~k~~~~pt~wv~l~v~Vp~~Dsev~~C~iC~q~F~~~~r 570 (570)
+...|.+......| ..|+++..|.+|++.|+++.|
T Consensus 2 ~~~~~~~~~~~~~W--------~pd~~~~~C~~C~~~Fs~~~R 36 (84)
T 1z2q_A 2 PLGSMGEKQSKGYW--------QEDEDAPACNGCGCVFTTTVR 36 (84)
T ss_dssp CCTTCCTTCCCSCC--------CCTTTCCBCTTTCCBCCTTSC
T ss_pred CcccccccCCCCcc--------ccCCCCCCCcCcCCccccchh
Confidence 34556666777889 449999999999999999876
No 134
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=92.95 E-value=0.091 Score=43.50 Aligned_cols=28 Identities=29% Similarity=0.861 Sum_probs=24.3
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|..|+++..++ ...|| ||.+||..+
T Consensus 25 ~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCGGG--CEECT-TSCEECSSS
T ss_pred CCcChhhCCccccc--CeecC-CCCEechhc
Confidence 56899999998877 48999 999999886
No 135
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=91.90 E-value=0.1 Score=42.09 Aligned_cols=28 Identities=25% Similarity=0.876 Sum_probs=24.1
Q ss_pred CccccccCccccCccccccccccCceeccCC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|..|+++..++ ...| .||.+||.+|
T Consensus 15 ~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccccc--CeEe-ecCCEecccC
Confidence 46899999998877 6899 5999999886
No 136
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.49 E-value=0.12 Score=42.00 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=25.1
Q ss_pred CCccccccCccccCccc-cccccccCceeccCC
Q 008333 427 AVSKCTACGTDFSAFVR-KHHCRNCGDIFCDKC 458 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~R-KHHCR~CG~vfC~~C 458 (570)
....|..|+++..++.. -..| .||.+||..+
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 36789999999886643 3789 7999999886
No 137
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.50 E-value=0.51 Score=39.23 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.7
Q ss_pred CCCCCccccCCCCCccccccC
Q 008333 550 SSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 550 ~~Dsev~~C~iC~q~F~~~~r 570 (570)
..|.++..|.+|+++|+++.|
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~R 29 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKK 29 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSC
T ss_pred ccCCCCCcCcCcCCccccchh
Confidence 459999999999999998876
No 138
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=81.84 E-value=0.64 Score=38.53 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.1
Q ss_pred CCCCCccccCCCCCccccccC
Q 008333 550 SSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 550 ~~Dsev~~C~iC~q~F~~~~r 570 (570)
..|.++..|.+|++.|+++.|
T Consensus 14 ~~d~~~~~C~~C~~~Fs~~~R 34 (82)
T 2yw8_A 14 LKDDEATHCRQCEKEFSISRR 34 (82)
T ss_dssp -CCCCCCBCTTTCCBCBTTBC
T ss_pred ccCccCCcccCcCCcccCccc
Confidence 459999999999999998865
No 139
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.34 E-value=0.76 Score=38.22 Aligned_cols=48 Identities=19% Similarity=0.632 Sum_probs=38.5
Q ss_pred CccccccCccccCc-cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAF-VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~-~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
...|..|++.|+++ +|-.-|+.|-+-+|.+|-.. .. ...=.|..|+++
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~---~~-----~~~W~C~VC~k~ 73 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ---ES-----NGTWRCKVCSGP 73 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE---CS-----TTCEEEHHHHSS
T ss_pred ccchhhhCccccccccCCCcCcccChhhccccccc---CC-----CCCEEEeeCchh
Confidence 56999999999965 79999999999999999532 11 156788888864
No 140
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.12 E-value=0.25 Score=39.21 Aligned_cols=43 Identities=21% Similarity=0.589 Sum_probs=30.6
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeecccc
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRC 480 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~C 480 (570)
..|..|++.|.... +..|.+|+.+||..|=.+ .++.++.|-.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~f--------iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVF--------VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHT--------TTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHH--------HHhhccCCcCC
Confidence 46999999995332 377999999999999432 13445566555
No 141
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.82 E-value=0.42 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=28.2
Q ss_pred CCcccCCCCccccccCccccCc--cccccccccCcee
Q 008333 420 DHWVPDEAVSKCTACGTDFSAF--VRKHHCRNCGDIF 454 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~--~RKHHCR~CG~vf 454 (570)
..|+.. ....|..|++.|+++ .|+|-|..||+++
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 356655 577999999999976 6899999999975
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=78.34 E-value=0.96 Score=38.17 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=18.3
Q ss_pred CCCCCccccCCCCCccccccC
Q 008333 550 SSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 550 ~~Dsev~~C~iC~q~F~~~~r 570 (570)
..|+++..|.+|++.|+++.|
T Consensus 15 ~~d~~~~~C~~C~~~F~~~~R 35 (90)
T 3t7l_A 15 VPDSEAPNCMNCQVKFTFTKR 35 (90)
T ss_dssp CCGGGCCBCTTTCCBCCSSSC
T ss_pred cccccCCcCcCCCCcccchhh
Confidence 448999999999999998765
No 143
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=77.85 E-value=1.2 Score=32.72 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=27.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCcce
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~ 462 (570)
...|.+|...|....+......||++||..|....
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 39 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEM 39 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHH
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHH
Confidence 46899999888654445566679999999998754
No 144
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=76.51 E-value=0.9 Score=38.97 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=31.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
...|.+|...|..-.. -.||++||..|....+. .....|-.|...+.
T Consensus 15 ~~~C~iC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVEPVT----LPCNHTLCKPCFQSTVE-------KASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSSCEE----CTTSCEECHHHHCCCCC-------TTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCceeE----cCCCCHHhHHHHHHHHh-------HCcCCCCCCCcccC
Confidence 3479999887753222 27999999999875431 11367888877554
No 145
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=76.47 E-value=1.5 Score=32.33 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=25.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCcce
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~ 462 (570)
...|.+|...|....+-.....||++||..|....
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHH
Confidence 45899999888654433334469999999998654
No 146
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=73.06 E-value=4.5 Score=32.16 Aligned_cols=51 Identities=27% Similarity=0.750 Sum_probs=38.0
Q ss_pred CCccccccCc-cccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHH
Q 008333 427 AVSKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (570)
Q Consensus 427 ~~~~C~~C~~-~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~ 482 (570)
+...|.+|.+ +|---. -|.|..|-.-||..|.. ++.|. +.+-.-||+.|-+
T Consensus 8 d~~~C~iC~KTKFADG~-Gh~C~yCk~r~CaRCGg-~v~lr---~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGC-GHNCSYCQTKFCARCGG-RVSLR---SNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSC-CEEBTTTCCEECTTSEE-EEESS---TTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCC-CccccccCCeeecccCC-Eeeec---CCeEEEEehhhhh
Confidence 3678999975 554333 48899999999999975 44453 4577889999975
No 147
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.62 E-value=2.8 Score=31.53 Aligned_cols=31 Identities=16% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcc
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHG 461 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~ 461 (570)
+...|.+|...|..-. --.||+.||..|...
T Consensus 5 ~~~~C~IC~~~~~~p~----~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPK----LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCSSCSSSCSSCBCCS----CSTTSCCSBTTTCSS
T ss_pred cCCCceEeCCccCCeE----EcCCCCcccHHHHcc
Confidence 3557999988876432 246999999999764
No 148
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.46 E-value=0.93 Score=35.37 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=31.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
...|.+|...|..-.. -.||++||..|....+. .....+.|-.|...
T Consensus 20 ~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~-----~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQIGE-----TSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSEEE----CTTCCEEEHHHHHHHCS-----SSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCeEE----cCCCChhhHHHHHHHHH-----cCCCCCCCCCCCCc
Confidence 4589999887763222 27999999999876542 11234567777643
No 149
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.49 E-value=1.9 Score=34.67 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=34.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|....+.-.--.||++||..|....+.-. .....|-.|...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCTTTCCCB
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCCCCCCcc
Confidence 457999999887644333334799999999987654211 1246677776543
No 150
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.72 E-value=3.1 Score=33.94 Aligned_cols=30 Identities=23% Similarity=0.621 Sum_probs=22.8
Q ss_pred CccccccCccccCcc-ccccccccCc-eeccC
Q 008333 428 VSKCTACGTDFSAFV-RKHHCRNCGD-IFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~-RKHHCR~CG~-vfC~~ 457 (570)
.-.|..|+..|.+.. -..+|+.||. |+-.+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 447999999998763 3578999998 66444
No 151
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=68.03 E-value=3.6 Score=34.15 Aligned_cols=31 Identities=26% Similarity=0.709 Sum_probs=22.9
Q ss_pred cccccCccccC--ccccccccccCceeccCCCc
Q 008333 430 KCTACGTDFSA--FVRKHHCRNCGDIFCDKCTH 460 (570)
Q Consensus 430 ~C~~C~~~Fsl--~~RKHHCR~CG~vfC~~CS~ 460 (570)
-|..|+..|.. ..++..|..||..||-.|-.
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 46667765532 24568899999999999964
No 152
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=67.28 E-value=2.3 Score=32.77 Aligned_cols=26 Identities=31% Similarity=0.821 Sum_probs=17.7
Q ss_pred cccccCccccCc------------cccccccccCceec
Q 008333 430 KCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (570)
Q Consensus 430 ~C~~C~~~Fsl~------------~RKHHCR~CG~vfC 455 (570)
.|..|++.|... .|.+.|..||+.|-
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 688899988642 24456777777763
No 153
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.49 E-value=2.1 Score=34.26 Aligned_cols=28 Identities=32% Similarity=0.771 Sum_probs=20.9
Q ss_pred Cccccc--cCccccCccccccccccCceeccCC
Q 008333 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~--C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|.. |++. .++ ..+|+.||.+||.++
T Consensus 12 ~~~Cs~~~Ck~~-~ll--~f~C~~C~~~FC~~H 41 (63)
T 1x4v_A 12 TNKCERAGCRQR-EMM--KLTCERCSRNFCIKH 41 (63)
T ss_dssp CCCCCSTTCCCC-CSS--CCBCSSSCCBCCHHH
T ss_pred CCCCCccCCCCC-Ccc--ceECCCCCcccCccc
Confidence 457886 9876 333 469999999999653
No 154
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.42 E-value=3.7 Score=31.08 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=23.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceE
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
...|.+|...|..-.. -.||++||..|....+
T Consensus 20 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKPVT----IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSCEE----CTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCeEE----eCCCCcchHHHHHHHH
Confidence 4589999887764322 2799999999987554
No 155
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=64.28 E-value=3.6 Score=33.99 Aligned_cols=29 Identities=24% Similarity=0.674 Sum_probs=22.1
Q ss_pred Cccccc--cCccccCccccccccccCceeccCCC
Q 008333 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDKCT 459 (570)
Q Consensus 428 ~~~C~~--C~~~Fsl~~RKHHCR~CG~vfC~~CS 459 (570)
...|.. |++. .++ -..|+.||.+||.++-
T Consensus 14 g~~Cs~~~C~~~-dfl--pf~C~~C~~~FC~~HR 44 (75)
T 1wys_A 14 GQHCQVQHCRQR-DFL--PFVCDGCSGIFCLEHR 44 (75)
T ss_dssp CCCCSCTTTCCC-SCC--CEECTTTCCEECSTTC
T ss_pred CCCcCcccCCCc-cce--eeECcccCcCcCcccC
Confidence 457886 9876 333 6789999999998763
No 156
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.15 E-value=3 Score=32.94 Aligned_cols=51 Identities=18% Similarity=0.419 Sum_probs=31.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-.. -.||++||..|....+..... ......|-.|...+
T Consensus 19 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 19 EVTCPICLELLTQPLS----LDCGHSFCQACLTANHKKSML--DKGESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCSCCSSCBC----CSSSCCBCTTHHHHHHHHHHH--TTSCCCCTTTCCSS
T ss_pred CCCCCCCCcccCCcee----CCCCCHHHHHHHHHHHHHhhc--CCCCCcCCCCCCcc
Confidence 4589999888754322 269999999998754322100 11245677777554
No 157
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.48 E-value=2.8 Score=37.41 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=18.4
Q ss_pred CCCCCccccCCCCCccccccC
Q 008333 550 SSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 550 ~~Dsev~~C~iC~q~F~~~~r 570 (570)
..|.++..|.+|+..|+++.|
T Consensus 64 ~~d~~~~~C~~C~~~Fs~~~R 84 (125)
T 1joc_A 64 AEDNEVQNCMACGKGFSVTVR 84 (125)
T ss_dssp CCGGGCCBCTTTCCBCCSSSC
T ss_pred ccCCCCCCCcCcCCccccccc
Confidence 449999999999999998765
No 158
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=63.41 E-value=1.8 Score=34.12 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=33.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-.. -.||++||..|....+..... .......|-.|...+
T Consensus 12 ~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcC
Confidence 4579999988764322 269999999998765432111 112356788887654
No 159
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.72 E-value=4.9 Score=31.53 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=26.1
Q ss_pred CccccccCccccCccc--cccccc--cCceeccCCCcc
Q 008333 428 VSKCTACGTDFSAFVR--KHHCRN--CGDIFCDKCTHG 461 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R--KHHCR~--CG~vfC~~CS~~ 461 (570)
.+.|..|+.......+ +..|+. ||..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 5689999887655433 456998 999999999753
No 160
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.64 E-value=1.9 Score=36.20 Aligned_cols=56 Identities=18% Similarity=0.426 Sum_probs=33.4
Q ss_pred ccccccCccccCccccccccccCce-----eccCCCcceEEeccCCCCCceeeccccHHHHHh
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAEVTQ 486 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~v-----fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~~ 486 (570)
..|..|+.......+.+||..|++- ||-+|-.....|..=+ ...-.|..|.+.+++
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACG--A~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACG--AVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETT--EEEECCTTTTCCCCT
T ss_pred CCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcC--CcCeeeccCCCEeec
Confidence 3677777776666667777777754 6777755433333211 124667777765543
No 161
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=62.45 E-value=2.1 Score=35.96 Aligned_cols=46 Identities=20% Similarity=0.582 Sum_probs=32.9
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|. .-..|-.||++||..|....+... ...|-.|...+
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTTTCCBC
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHC-------cCCCCCCCCcC
Confidence 47999988764 345668999999999987554211 15788887654
No 162
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=62.27 E-value=5.5 Score=31.40 Aligned_cols=48 Identities=19% Similarity=0.446 Sum_probs=31.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-.. ..--.||++||..|....+. ..+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~--------~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLE--------QHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHT--------TTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHH--------cCCcCcCcCCcc
Confidence 4589999988864321 11125999999999876531 125788887554
No 163
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.27 E-value=2.5 Score=35.54 Aligned_cols=47 Identities=21% Similarity=0.518 Sum_probs=30.6
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|..-.. -.||++||..|....+... .....|-.|...+
T Consensus 22 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 22 LECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQK-----KGPSQCPLCKNDI 68 (112)
T ss_dssp TSCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSS-----SSSCCCTTTSCCC
T ss_pred CCCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhC-----CCCCCCcCCCCcC
Confidence 379999887753222 3799999999987553211 1235788887544
No 164
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.86 E-value=3 Score=32.58 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=31.5
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-...... .||++||..|....+.. .+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~--------~~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV--------RKVCPLCNMPV 62 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH--------CSBCTTTCCBC
T ss_pred CCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc--------CCcCCCcCccc
Confidence 45899999887644332222 59999999998755321 13688886543
No 165
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=60.93 E-value=1.5 Score=37.39 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=34.9
Q ss_pred ccccccCccccCcc--------------ccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 429 SKCTACGTDFSAFV--------------RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~--------------RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
..|.+|...|..-. .....-.||++||..|....+... .......|-.|...+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~---~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG---NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT---CCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc---cCCCCCcCCCCCCccC
Confidence 48999998885421 111245699999999988654211 1134568888876554
No 166
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=59.60 E-value=3.8 Score=33.79 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=10.2
Q ss_pred CccccccCccccC
Q 008333 428 VSKCTACGTDFSA 440 (570)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (570)
.-.|..|++.|..
T Consensus 28 ~h~C~~Cgk~F~~ 40 (85)
T 2lv2_A 28 CHLCPVCGESFAS 40 (85)
T ss_dssp TEECTTSCCEESS
T ss_pred CEECCCCCCCcCc
Confidence 4579999998875
No 167
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=59.51 E-value=1.2 Score=38.76 Aligned_cols=45 Identities=18% Similarity=0.456 Sum_probs=31.1
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|..-.. -.||+.||..|....+. ...+.|-.|...+
T Consensus 53 ~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVFRPIT----TVCQHNVCKDCLDRSFR-------AQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHH-------TTCCBCTTTCCBC
T ss_pred CCCCcCChHHcCcEE----eeCCCcccHHHHHHHHh-------HCcCCCCCCCccC
Confidence 479999887763221 27999999999875532 1235788887654
No 168
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.44 E-value=2.9 Score=32.63 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=30.2
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-.. -.||++||..|....+. ..+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~~~~----~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTCVHPVS----LPCKHVFCYLCVKGASW--------LGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBCSSEEE----ETTTEEEEHHHHHHCTT--------CSSBCSSSCCBC
T ss_pred CCCCccCCcccCCCEE----ccCCCHHHHHHHHHHHH--------CCCcCcCcCchh
Confidence 4579999887743321 26999999999865431 115788887554
No 169
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=59.35 E-value=6.6 Score=29.88 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.5
Q ss_pred CccccccCccccC
Q 008333 428 VSKCTACGTDFSA 440 (570)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (570)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~k~f~~ 29 (74)
T 2lce_A 17 PYKCDRCQASFRY 29 (74)
T ss_dssp SBCCTTSSCCBSC
T ss_pred CeECCCCCceeCC
Confidence 4579999999974
No 170
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=57.99 E-value=5.5 Score=28.46 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=9.1
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 368888888864
No 171
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.46 E-value=3.9 Score=30.13 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=23.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCcce
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGR 462 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~ 462 (570)
...|.+|...|..-.. -.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI----IECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSCCC----CSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCccEe----CCCCCccCHHHHHHH
Confidence 4589999888764322 369999999998754
No 172
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.07 E-value=3.9 Score=32.16 Aligned_cols=36 Identities=22% Similarity=0.455 Sum_probs=26.0
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcceE
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
+...|.+|...|..-. ....-.||++||..|....+
T Consensus 22 ~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~ 57 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWL 57 (75)
T ss_dssp SCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHH
T ss_pred CCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHH
Confidence 4568999998876432 23444699999999987653
No 173
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.98 E-value=2.3 Score=32.38 Aligned_cols=37 Identities=24% Similarity=0.705 Sum_probs=26.4
Q ss_pred CCccccccCccccCc---cccccccccCceeccCCCcceE
Q 008333 427 AVSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRI 463 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~---~RKHHCR~CG~vfC~~CS~~~~ 463 (570)
+...|.+|...|... .+...-..||++||..|....+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH
Confidence 356899999887643 2233456899999999987543
No 174
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.36 E-value=5.9 Score=31.91 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=12.6
Q ss_pred ccCCCCCccccccC
Q 008333 557 ECGVCQHPFLVSAH 570 (570)
Q Consensus 557 ~C~iC~q~F~~~~r 570 (570)
.|.+|++.|+++.|
T Consensus 13 ~C~~C~~~F~~~~R 26 (73)
T 1vfy_A 13 ACMICSKKFSLLNR 26 (73)
T ss_dssp BCTTTCCBCBTTBC
T ss_pred cccCCCCccCCccc
Confidence 79999999998765
No 175
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.07 E-value=5.1 Score=32.41 Aligned_cols=56 Identities=16% Similarity=0.369 Sum_probs=36.4
Q ss_pred CCcccCCCCccccccCccccCc---------cc--cccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 420 DHWVPDEAVSKCTACGTDFSAF---------VR--KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~---------~R--KHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
..|.-|.+...|.+|...|... .. ...--.||++||..|....+. ....|-.|...
T Consensus 7 ~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~ 73 (81)
T 2ecl_A 7 GMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--------QNNRCPLCQQD 73 (81)
T ss_dssp CCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--------TCCBCTTTCCB
T ss_pred EEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--------hCCCCCCcCCC
Confidence 4576676778899999988541 11 112225999999999875531 12467777643
No 176
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=54.93 E-value=6.7 Score=27.99 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.3
Q ss_pred cccccCccccC
Q 008333 430 KCTACGTDFSA 440 (570)
Q Consensus 430 ~C~~C~~~Fsl 440 (570)
.|..|++.|..
T Consensus 3 ~C~~C~~~f~~ 13 (57)
T 1bbo_A 3 ICEECGIRXKK 13 (57)
T ss_dssp BCTTTCCBCSS
T ss_pred cCCCCcCcCCC
Confidence 58888888864
No 177
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=54.93 E-value=2.6 Score=32.50 Aligned_cols=48 Identities=23% Similarity=0.681 Sum_probs=32.1
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~---~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
...|.+|...|..- .+......||++||..|....+. ....|-.|...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~ 60 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--------NANTCPTCRKK 60 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH--------HCSBCTTTCCB
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH--------cCCCCCCCCCc
Confidence 45899999887543 23335668999999999875432 11367777643
No 178
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.59 E-value=4.2 Score=31.80 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=30.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|.. ...-..||++||..|....+.. .+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY--------SNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH--------CSSCTTTCCCC
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc--------CCcCCCcCccc
Confidence 4589999877653 2333579999999998765421 24677776543
No 179
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=53.41 E-value=7.1 Score=28.24 Aligned_cols=11 Identities=27% Similarity=0.824 Sum_probs=8.2
Q ss_pred cccccCccccC
Q 008333 430 KCTACGTDFSA 440 (570)
Q Consensus 430 ~C~~C~~~Fsl 440 (570)
.|..|++.|..
T Consensus 4 ~C~~C~~~f~~ 14 (60)
T 2adr_A 4 VCEVCTRAFAR 14 (60)
T ss_dssp CCTTTCCCBSC
T ss_pred cCCCCccccCC
Confidence 57888888864
No 180
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=52.88 E-value=5.6 Score=30.54 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=30.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|.... ....-.||++||..|....+.. ...|-.|...+
T Consensus 14 ~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~~ 61 (69)
T 2kiz_A 14 EEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLIT--------NKKCPICRVDI 61 (69)
T ss_dssp CCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHH--------CSBCTTTCSBS
T ss_pred CCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHc--------CCCCcCcCccc
Confidence 468999988774322 2334469999999998754321 12477776443
No 181
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=51.79 E-value=6.4 Score=30.98 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=30.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~ 482 (570)
...|.+|...|..- ..-..||++||..|....+... ..+.|-.|..
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP~Cr~ 60 (74)
T 2yur_A 15 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLES------DEHTCPTCHQ 60 (74)
T ss_dssp GGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHS------SSSCCSSSCC
T ss_pred CCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhc------CCCcCCCCCC
Confidence 45799998776532 2233499999999987654211 1356777765
No 182
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.59 E-value=4.3 Score=34.91 Aligned_cols=44 Identities=23% Similarity=0.606 Sum_probs=29.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..- .--..||++||..|....+. ..|-.|...+
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~~ 65 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG----------TGCPVCYTPA 65 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT----------TBCSSSCCBC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc----------CCCcCCCCcC
Confidence 34799998776422 12227999999999875431 5688887543
No 183
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.67 E-value=13 Score=28.33 Aligned_cols=13 Identities=46% Similarity=0.971 Sum_probs=10.5
Q ss_pred CccccccCccccC
Q 008333 428 VSKCTACGTDFSA 440 (570)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (570)
.-.|..|++.|..
T Consensus 18 ~~~C~~C~~~f~~ 30 (77)
T 2cot_A 18 RYKCDECGKSFSH 30 (77)
T ss_dssp SSBCSSSCCBCSC
T ss_pred CEECCCCCcccCC
Confidence 4579999999964
No 184
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=50.60 E-value=6.8 Score=29.45 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=8.6
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 10 ~~C~~C~k~f~~ 21 (70)
T 1x5w_A 10 EKCSECSYSCSS 21 (70)
T ss_dssp EECSSSSCEESS
T ss_pred eECCCCCcccCC
Confidence 468888888764
No 185
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=50.27 E-value=4.3 Score=36.93 Aligned_cols=47 Identities=17% Similarity=0.470 Sum_probs=32.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|.. -.-+..||++||..|....+. .....|-.|...+
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALR-------SGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-------TTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-------hCcCCCCCCCCcC
Confidence 3589999877653 334458999999999876542 1135688887644
No 186
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=50.25 E-value=7.5 Score=29.66 Aligned_cols=46 Identities=26% Similarity=0.545 Sum_probs=30.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..- .....||++||..|....+. ....|-.|...+
T Consensus 5 ~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~--------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 5 AERCPICLEDPSNY---SMALPCLHAFCYVCITRWIR--------QNPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHH--------HSCSTTTTCCCC
T ss_pred CCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHh--------CcCcCcCCChhh
Confidence 45899998877532 23457999999999875431 114677776544
No 187
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.48 E-value=3.6 Score=33.69 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=9.9
Q ss_pred CccccccCcccc
Q 008333 428 VSKCTACGTDFS 439 (570)
Q Consensus 428 ~~~C~~C~~~Fs 439 (570)
.-.|..|++.|.
T Consensus 24 ~~~C~~C~k~f~ 35 (98)
T 2gqj_A 24 EAVCPTCNVVTR 35 (98)
T ss_dssp CCCCTTTCCCCS
T ss_pred CcCCCCCCCChh
Confidence 347999999997
No 188
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=49.40 E-value=7.4 Score=29.52 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=9.1
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 15 ~~C~~C~k~f~~ 26 (72)
T 1x6e_A 15 YGCVECGKAFSR 26 (72)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCCCCccCC
Confidence 468888888864
No 189
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=48.72 E-value=7 Score=28.18 Aligned_cols=12 Identities=42% Similarity=0.985 Sum_probs=9.2
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (54)
T 2eps_A 13 YICQSCGKGFSR 24 (54)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 468889988864
No 190
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.50 E-value=4.5 Score=33.35 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 427 AVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
+...|.+|...|..... ...-.||++||..|...++. ....|-.|...
T Consensus 39 ~~~~C~IC~~~~~~~~~-~~~l~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQ--------KSGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCE-EEEETTTEEEEHHHHHHHHT--------TTCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCc-EEecCCCChHHHHHHHHHHH--------cCCcCcCcCcc
Confidence 35689999988865322 22235999999999876531 12467777543
No 191
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.16 E-value=6 Score=30.48 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=31.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
...|.+|...|.. .--.||++||..|....+. ..+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCCcCCccc
Confidence 4589999887765 3356999999999875432 2467888875543
No 192
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.15 E-value=5.8 Score=30.52 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=19.0
Q ss_pred CccccccCccccCccccccccccCce
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDI 453 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~v 453 (570)
...|..|+.. .-.+..+||+||..
T Consensus 14 k~iCpkC~a~--~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGAT--NPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCE--ECTTCSSCSSSSSC
T ss_pred CccCCCCCCc--CCCCceecCCCCCc
Confidence 4579999886 55778889999875
No 193
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=47.97 E-value=17 Score=29.70 Aligned_cols=33 Identities=33% Similarity=0.805 Sum_probs=23.8
Q ss_pred Cccccc--cCccccC--cccccccc-----ccCceeccCCCc
Q 008333 428 VSKCTA--CGTDFSA--FVRKHHCR-----NCGDIFCDKCTH 460 (570)
Q Consensus 428 ~~~C~~--C~~~Fsl--~~RKHHCR-----~CG~vfC~~CS~ 460 (570)
..-|.. |+..... -.++..|. .||..||..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 555664 7654432 35678997 999999999975
No 194
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=47.67 E-value=5.2 Score=35.68 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=20.9
Q ss_pred CccccccCc-ccc-CccccccccccCceeccC
Q 008333 428 VSKCTACGT-DFS-AFVRKHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~-~Fs-l~~RKHHCR~CG~vfC~~ 457 (570)
...|..|++ .+. .-....||+.||++|-.-
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 348999987 221 224578999999998554
No 195
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.27 E-value=7 Score=29.98 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=9.0
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 8 ~~C~~C~k~f~~ 19 (78)
T 2d9h_A 8 LQCEICGFTCRQ 19 (78)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCeeCC
Confidence 468888888864
No 196
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=47.21 E-value=4.7 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=17.8
Q ss_pred ccccccCccccCc---------cccccccccCceecc
Q 008333 429 SKCTACGTDFSAF---------VRKHHCRNCGDIFCD 456 (570)
Q Consensus 429 ~~C~~C~~~Fsl~---------~RKHHCR~CG~vfC~ 456 (570)
-.|..|++.|... .+.+.|..||+.|-.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 4788999988632 233456667666543
No 197
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.38 E-value=5.3 Score=30.57 Aligned_cols=45 Identities=22% Similarity=0.628 Sum_probs=30.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
...|.+|...|..-.. -.||++||..|....+. .....|-.|...
T Consensus 15 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLS-------SSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHT-------TSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHH-------hCcCCCCCCCcC
Confidence 4579999887754322 48999999999876542 123457777543
No 198
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=46.24 E-value=7.3 Score=30.65 Aligned_cols=7 Identities=57% Similarity=1.673 Sum_probs=3.5
Q ss_pred ccccCce
Q 008333 447 CRNCGDI 453 (570)
Q Consensus 447 CR~CG~v 453 (570)
||.||+.
T Consensus 20 CrRCG~~ 26 (57)
T 1vq8_1 20 CRRCGEK 26 (57)
T ss_dssp CTTTCSE
T ss_pred ccccCCh
Confidence 5555543
No 199
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.20 E-value=6.9 Score=31.14 Aligned_cols=45 Identities=22% Similarity=0.573 Sum_probs=30.8
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-. --.||++||..|....+. ....|-.|...+
T Consensus 15 ~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNPV----VTKCRHYFCESCALEHFR--------ATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSEE----ECTTSCEEEHHHHHHHHH--------HCSBCSSSCCBC
T ss_pred CCCCcCCCchhcCee----EccCCCHhHHHHHHHHHH--------CCCcCCCcCccc
Confidence 457999988775422 247999999999876532 134677776544
No 200
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=45.86 E-value=4.5 Score=30.28 Aligned_cols=48 Identities=23% Similarity=0.678 Sum_probs=31.5
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHH
Q 008333 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAE 483 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~---~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~ 483 (570)
...|.+|...|... .+......||++||..|....+.. ...|-.|...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCCCCcc
Confidence 45799998887543 233355689999999998754321 2366666543
No 201
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.79 E-value=5.7 Score=31.30 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=32.4
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-. - -.||++||..|....+.... .......|-.|...+
T Consensus 19 ~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEPV---S-ADCNHSFCRACITLNYESNR--NTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSCE---E-CTTSCCBCHHHHHHHHHHSB--CTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCcce---e-CCCCCHHHHHHHHHHHHhcc--CCCCCCCCCCCCCcC
Confidence 458999988775432 2 35999999999875432211 112356788887544
No 202
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.69 E-value=8.1 Score=29.33 Aligned_cols=27 Identities=26% Similarity=0.602 Sum_probs=17.7
Q ss_pred CccccccCcc-cc-CccccccccccCcee
Q 008333 428 VSKCTACGTD-FS-AFVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~~-Fs-l~~RKHHCR~CG~vf 454 (570)
...|..|+.. |- .-..|++|..||.++
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 5679999863 21 123478888888764
No 203
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.22 E-value=9.2 Score=32.28 Aligned_cols=28 Identities=21% Similarity=0.492 Sum_probs=21.1
Q ss_pred Cccccc--cCccccCccccccccccCceeccCC
Q 008333 428 VSKCTA--CGTDFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~--C~~~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
...|.. |++. .+ --.+|+.||..||.++
T Consensus 25 ~~~C~~~~Ck~~-~~--l~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDV-EL--VAVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCE-ES--SCEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCC-Cc--cceECCCCCccccccc
Confidence 457887 9876 33 2469999999999765
No 204
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=44.05 E-value=6.3 Score=31.03 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=30.9
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.-.|.+|...|..-. .-.||++||..|....+. ...+.|-.|...+
T Consensus 8 ~~~C~IC~~~~~~Pv----~~~CgH~fc~~Ci~~~~~-------~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMKDPV----IVSTGQTYERSSIQKWLD-------AGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCSSEE----EETTTEEEEHHHHHHHHT-------TTCCBCTTTCCBC
T ss_pred cCCCCCccccccCCE----EcCCCCeecHHHHHHHHH-------HCcCCCCCCcCCC
Confidence 457999988775322 237999999999876542 1145677777543
No 205
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=43.66 E-value=6.7 Score=32.46 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=30.8
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|.. -...-.||+.||..|....+. ....|-.|...+
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS--------YKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT--------TCCBCTTTCCBC
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH--------CCCCCCCCCCcC
Confidence 479999887753 222347999999999875532 125788887554
No 206
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.18 E-value=5.3 Score=30.46 Aligned_cols=49 Identities=20% Similarity=0.515 Sum_probs=29.7
Q ss_pred ccccccCc-cccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGT-DFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~-~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|.. .|..-.++..=..||++||..|....+. . ....|-.|...+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~--~-----~~~~CP~Cr~~~ 53 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV--R-----GAGNCPECGTPL 53 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH--T-----TSSSCTTTCCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH--c-----CCCcCCCCCCcc
Confidence 47999987 5644332222247999999999865421 1 123566666443
No 207
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=42.12 E-value=7.3 Score=32.68 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=22.4
Q ss_pred CccccccCc--cccCccccccccccCceeccCC
Q 008333 428 VSKCTACGT--DFSAFVRKHHCRNCGDIFCDKC 458 (570)
Q Consensus 428 ~~~C~~C~~--~Fsl~~RKHHCR~CG~vfC~~C 458 (570)
.-.|..|++ .|..-..+.+|..||..|..--
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecCCE
Confidence 347999986 3344466889999999886543
No 208
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=41.99 E-value=7.9 Score=30.36 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=17.3
Q ss_pred CccccccCccccCccccccccccC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCG 451 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG 451 (570)
...|+.|.... -.|-.+||+||
T Consensus 19 k~ICrkC~ARn--p~~A~~CRKCg 40 (56)
T 2ayj_A 19 KKVCRKCGALN--PIRATKCRRCH 40 (56)
T ss_dssp CEEETTTCCEE--CTTCSSCTTTC
T ss_pred hhhhccccCcC--CcccccccCCC
Confidence 56899998864 35678999988
No 209
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=41.66 E-value=8.7 Score=35.16 Aligned_cols=31 Identities=29% Similarity=0.738 Sum_probs=22.2
Q ss_pred CCCCcccCCCCccccccCccccCccccccccccCce
Q 008333 418 EKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDI 453 (570)
Q Consensus 418 ~~~~Wvpd~~~~~C~~C~~~Fsl~~RKHHCR~CG~v 453 (570)
..-.|. -.|..|++.|........|-.||.-
T Consensus 127 ~~~~~~-----y~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 127 KVIKWR-----YVCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp SCCCCC-----EEESSSCCEESSCCGGGBCTTTCCB
T ss_pred ccccEE-----EECCCCCCcccCCCCCCcCCCCCCc
Confidence 345566 4899999999876555677777753
No 210
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.19 E-value=11 Score=28.75 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.2
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 16 ~~C~~C~k~f~~ 27 (77)
T 2ct1_A 16 YECYICHARFTQ 27 (77)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCcCchhCC
Confidence 468888888864
No 211
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=40.81 E-value=7.5 Score=32.74 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=31.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|.. -...-.||++||..|....+.. ...|-.|...+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET--------SKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS--------CSBCTTTCCBS
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh--------CCcCcCCCccc
Confidence 3479999877643 2333489999999998655311 26788887654
No 212
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=40.47 E-value=8.7 Score=31.69 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=9.5
Q ss_pred ccccccCccc-cC
Q 008333 429 SKCTACGTDF-SA 440 (570)
Q Consensus 429 ~~C~~C~~~F-sl 440 (570)
-.|..|++.| ..
T Consensus 35 ~~C~~C~k~F~~~ 47 (96)
T 2ctd_A 35 VSCPTCQAVGRKT 47 (96)
T ss_dssp EECTTTCSCEESS
T ss_pred cCCCCCCCCcccC
Confidence 4799999999 53
No 213
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=40.08 E-value=6.6 Score=34.74 Aligned_cols=57 Identities=21% Similarity=0.445 Sum_probs=5.7
Q ss_pred CCcccCCCCccccccCccccCcc----------ccccc----cccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 420 DHWVPDEAVSKCTACGTDFSAFV----------RKHHC----RNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~~----------RKHHC----R~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.-|.....|.+|...|...- ....| -.||++||..|....+.. ..+|-.|...+
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------~~~CP~Cr~~~ 110 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------RQVCPLDNREW 110 (117)
T ss_dssp EEEEECCCC----------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------CCcCCCCCCee
Confidence 35666667789999999886421 01112 269999999998765422 35788887653
No 214
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=39.14 E-value=12 Score=30.64 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=18.7
Q ss_pred CccccccCccccCccc----cccccccCceecc
Q 008333 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCD 456 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~vfC~ 456 (570)
...|..|++. .+.| .-||+.||+.|-.
T Consensus 26 ky~C~fCgk~--~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKK--TVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSS--CBSBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCc--eeEecCCCeEECCCCCCEEeC
Confidence 3479999864 2333 4589999998744
No 215
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.19 E-value=11 Score=31.77 Aligned_cols=28 Identities=32% Similarity=0.828 Sum_probs=19.4
Q ss_pred CccccccCccccCccc----cccccccCceeccC
Q 008333 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~vfC~~ 457 (570)
...|..|++. .+.| .-||+.||+.|-.-
T Consensus 35 ky~CpfCGk~--~vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGRK--AVKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCSS--CEEEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCCc--eeEecCcCeEEcCCCCCEEeCC
Confidence 3479999875 2333 45899999988543
No 216
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=36.69 E-value=13 Score=31.79 Aligned_cols=27 Identities=26% Similarity=0.640 Sum_probs=18.9
Q ss_pred ccccccCccccCccc----cccccccCceeccC
Q 008333 429 SKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~R----KHHCR~CG~vfC~~ 457 (570)
-.|..|++. . +.| .-||+.||+.|-.-
T Consensus 37 y~CpfCgk~-~-vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGKF-A-VKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCSS-C-BEEEETTEEECSSSCCEEECC
T ss_pred ccCcccCCC-e-eEecCcceEEcCCCCCEEeCC
Confidence 479999875 2 333 45899999988543
No 217
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.65 E-value=12 Score=26.03 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.2
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 13 ~~C~~C~k~f~~ 24 (48)
T 2epr_A 13 VACEICGKIFRD 24 (48)
T ss_dssp EEETTTTEEESS
T ss_pred eeCCCCCcccCC
Confidence 468888888864
No 218
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.97 E-value=9.7 Score=33.07 Aligned_cols=54 Identities=20% Similarity=0.488 Sum_probs=34.8
Q ss_pred ccccccCccccCccccccccccCce-----eccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDI-----FCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~v-----fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|..|+.......+.+||..|++- +|-+|-..-..|-.=+ ----.|..|.+.+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACG--AvdYFC~~chgLi 91 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG--AVDYFCQHGHGLI 91 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETT--EEEEEETTTTEEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhc--CcchhhccCCcee
Confidence 4799999888777778889998864 6777765444443211 1225667776544
No 219
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=35.57 E-value=10 Score=30.79 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=30.7
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.-.|.+|...|..- ..-..||+.||..|....+.- .....|-.|...+
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLE------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHH------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHh------cCCCcCcCCCCcC
Confidence 45899998877532 222339999999998754321 1125788887543
No 220
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=35.02 E-value=17 Score=26.70 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=8.7
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (66)
T 2drp_A 11 YRCKVCSRVYTH 22 (66)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCcchhCC
Confidence 368888888864
No 221
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=34.52 E-value=16 Score=31.40 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=18.7
Q ss_pred ccccccCccccCccc----cccccccCceeccC
Q 008333 429 SKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~R----KHHCR~CG~vfC~~ 457 (570)
..|..|++. .+.| .-||+.||+.|-.-
T Consensus 37 y~CpfCgk~--~vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 37 YDCSFCGKK--TVKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CCCSSSCSS--CCEEEETTEEECTTTCCEEECC
T ss_pred CcCCCCCCc--eeeecccceEEcCCCCCEEeCC
Confidence 479999864 2333 35899999988543
No 222
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.42 E-value=20 Score=28.15 Aligned_cols=12 Identities=50% Similarity=1.057 Sum_probs=8.9
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 9 ~~C~~C~~~f~~ 20 (96)
T 2dmd_A 9 HKCEVCGKCFSR 20 (96)
T ss_dssp CCBTTTTBCCCC
T ss_pred eECCCCCCccCC
Confidence 468888888864
No 223
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=34.24 E-value=9.9 Score=34.50 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=30.5
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|..-.. -.||.+||..|....+. .....|-.|...+
T Consensus 79 ~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 79 FMCVCCQELVYQPVT----TECFHNVCKDCLQRSFK-------AQVFSCPACRHDL 123 (150)
T ss_dssp TBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHHH-------TTCCBCTTTCCBC
T ss_pred CEeecCChhhcCCEE----cCCCCchhHHHHHHHHH-------hCCCcCCCCCccC
Confidence 479999887753222 48999999999875542 1234688887554
No 224
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.53 E-value=18 Score=27.67 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=9.3
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 16 ~~C~~C~~~f~~ 27 (86)
T 1x6h_A 16 YACSHCDKTFRQ 27 (86)
T ss_dssp EECSSSSCEESS
T ss_pred CcCCCCCCccCC
Confidence 468889888864
No 225
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=33.50 E-value=8.7 Score=32.75 Aligned_cols=50 Identities=22% Similarity=0.678 Sum_probs=33.0
Q ss_pred CCccccccCccccCc---cccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 427 AVSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~---~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
+...|.+|...|... .+..-.-.||++||..|....+. ..+.|-.|...+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--------NANTCPTCRKKI 123 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH--------HCSBCTTTCCBC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH--------cCCCCCCCCCcC
Confidence 466899999888643 22334568999999999875431 124676666443
No 226
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=32.81 E-value=19 Score=37.25 Aligned_cols=41 Identities=24% Similarity=0.651 Sum_probs=29.1
Q ss_pred CccccccCccccCccccccccccCce-eccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~v-fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|.... --.||++ ||..|.... +.|-.|...+
T Consensus 295 ~~~C~IC~~~~~~~v----~lpCgH~~fC~~C~~~~------------~~CP~CR~~i 336 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVV----FIPCGHLVVCQECAPSL------------RKCPICRGII 336 (345)
T ss_dssp TCBCTTTSSSBCCEE----EETTCCEEECTTTGGGC------------SBCTTTCCBC
T ss_pred CCCCCccCCcCCceE----EcCCCChhHhHHHHhcC------------CcCCCCCCCc
Confidence 458999988775322 2379999 999997632 6788887544
No 227
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=32.79 E-value=18 Score=27.30 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=6.1
Q ss_pred cccccCcccc
Q 008333 430 KCTACGTDFS 439 (570)
Q Consensus 430 ~C~~C~~~Fs 439 (570)
.|..|++.|.
T Consensus 31 ~C~~C~~~f~ 40 (82)
T 2kmk_A 31 PCQYCGKRFH 40 (82)
T ss_dssp ECSSSCCEES
T ss_pred eCCcCChhhC
Confidence 5666666664
No 228
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=32.76 E-value=19 Score=28.91 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=6.2
Q ss_pred cccccCcccc
Q 008333 430 KCTACGTDFS 439 (570)
Q Consensus 430 ~C~~C~~~Fs 439 (570)
.|..|++.|.
T Consensus 19 ~C~~C~~~f~ 28 (106)
T 2ee8_A 19 ICKFCGRHFT 28 (106)
T ss_dssp BCSSSCCBCS
T ss_pred ECCCCCCccC
Confidence 5666666664
No 229
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=32.15 E-value=19 Score=28.19 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=8.8
Q ss_pred cccccCccccC
Q 008333 430 KCTACGTDFSA 440 (570)
Q Consensus 430 ~C~~C~~~Fsl 440 (570)
.|..|++.|..
T Consensus 5 ~C~~C~k~f~~ 15 (88)
T 1llm_C 5 QCRICMRNFSR 15 (88)
T ss_dssp ECTTTCCEESC
T ss_pred cCCCCCCccCC
Confidence 68889988864
No 230
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=31.59 E-value=20 Score=27.75 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=6.0
Q ss_pred cccccCcccc
Q 008333 430 KCTACGTDFS 439 (570)
Q Consensus 430 ~C~~C~~~Fs 439 (570)
.|..|++.|.
T Consensus 36 ~C~~C~~~f~ 45 (90)
T 1a1h_A 36 QCRICMRNFS 45 (90)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 5666666664
No 231
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.47 E-value=19 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.615 Sum_probs=17.2
Q ss_pred CccccccCc-cc--cCccccccccccCcee
Q 008333 428 VSKCTACGT-DF--SAFVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~-~F--sl~~RKHHCR~CG~vf 454 (570)
...|..|+. .+ ..-.....|..||.++
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 457999976 43 3334456777777766
No 232
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=31.02 E-value=18 Score=31.70 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=18.4
Q ss_pred ccccccCccccCc------------cccccccccCceec
Q 008333 429 SKCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (570)
Q Consensus 429 ~~C~~C~~~Fsl~------------~RKHHCR~CG~vfC 455 (570)
=.|..|++.|... .|.+-|..||+.|-
T Consensus 23 y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 61 (133)
T 2lt7_A 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP 61 (133)
T ss_dssp EEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEES
T ss_pred eECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecc
Confidence 3799999999752 23445777777763
No 233
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.00 E-value=7.5 Score=28.91 Aligned_cols=29 Identities=28% Similarity=0.692 Sum_probs=19.9
Q ss_pred ccccccCccccCc-----cccccccccCceeccC
Q 008333 429 SKCTACGTDFSAF-----VRKHHCRNCGDIFCDK 457 (570)
Q Consensus 429 ~~C~~C~~~Fsl~-----~RKHHCR~CG~vfC~~ 457 (570)
-.|..|++.|... .+.+.|..||+.|-..
T Consensus 19 ~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQE 52 (73)
T ss_dssp EECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCC
T ss_pred eeCCcccchhCCHHHhCcCCCCCCCCCChhhcCH
Confidence 4788888888532 4567788887776443
No 234
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=30.48 E-value=13 Score=31.95 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=30.0
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-. . -.||.+||..|....+... ...|-.|...+
T Consensus 18 ~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~ 63 (118)
T 3hct_A 18 KYECPICLMALREAV---Q-TPCGHRFCKACIIKSIRDA-------GHKCPVDNEIL 63 (118)
T ss_dssp GGBCTTTCSBCSSEE---E-CTTSCEEEHHHHHHHHHHH-------CSBCTTTCCBC
T ss_pred CCCCCcCChhhcCeE---E-CCcCChhhHHHHHHHHhhC-------CCCCCCCCCCc
Confidence 458999988775332 2 2699999999987543211 12788886443
No 235
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=30.45 E-value=13 Score=32.92 Aligned_cols=43 Identities=23% Similarity=0.624 Sum_probs=28.2
Q ss_pred cccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.|.+|...|.-- .--.||+.||..|....+ .....|-.|...+
T Consensus 55 ~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~--------~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 55 QCIICSEYFIEA----VTLNCAHSFCSYCINEWM--------KRKIECPICRKDI 97 (138)
T ss_dssp BCTTTCSBCSSE----EEETTSCEEEHHHHHHHT--------TTCSBCTTTCCBC
T ss_pred CCcccCcccCCc----eECCCCCCccHHHHHHHH--------HcCCcCCCCCCcC
Confidence 699998877532 123699999999976542 1124577776533
No 236
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=30.01 E-value=70 Score=30.83 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=38.2
Q ss_pred eeeccccHHHHHhhhhhhhhhcCCCcccchHHHHHHHHHHHHhcccCCcccCCCCcccccccccCcccccccccccCCCC
Q 008333 474 VRVCDRCMAEVTQRLSNAKEMANKPALQSHEDLARKLQEMEKNRKSSSGSKSDGSGRRMREVACPTCTVHLQVQVPSSGS 553 (570)
Q Consensus 474 vRVC~~Cy~~l~~r~s~~~e~~sk~~~q~~e~L~rkl~ele~~r~~S~~S~~d~s~~~~k~~~~pt~wv~l~v~Vp~~Ds 553 (570)
..|...+.+.+............ ...+...+++|.... ...-..+. .+.|-+....-.|+ +|.
T Consensus 103 ~~Vk~kil~li~~W~~~f~~~~~------l~~i~~~Y~~Lk~~G--~~FP~~~~-~damf~~~~~p~W~--------~~~ 165 (226)
T 3zyq_A 103 VNVRNKILYLIQAWAHAFRNEPK------YKVVQDTYQIMKVEG--HVFPEFKE-SDAMFAAERAPDWV--------DAE 165 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCGG------GHHHHHHHHHHHHHT--CCCCCCCG-GGGCCCCCCCCCCC--------CCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc------hHHHHHHHHHHHhcC--CCcccchh-HHHhhhcccccccc--------cCC
Confidence 45666666666555444332211 223333344333221 11111111 23333444556783 243
Q ss_pred CccccCCCCCccccccC
Q 008333 554 ETIECGVCQHPFLVSAH 570 (570)
Q Consensus 554 ev~~C~iC~q~F~~~~r 570 (570)
.|.+|++.|+++.|
T Consensus 166 ---~C~~C~~~F~~~~R 179 (226)
T 3zyq_A 166 ---ECHRCRVQFGVMTR 179 (226)
T ss_dssp ---BCTTTCCBCBTTBC
T ss_pred ---CCcCcCCCCCcccc
Confidence 79999999998765
No 237
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.13 E-value=24 Score=27.66 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=8.4
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 8 ~~C~~C~~~f~~ 19 (95)
T 2yt9_A 8 VACEICGKIFRD 19 (95)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCccCC
Confidence 467788887754
No 238
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=28.41 E-value=25 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.4
Q ss_pred Ccccc--ccCccccC
Q 008333 428 VSKCT--ACGTDFSA 440 (570)
Q Consensus 428 ~~~C~--~C~~~Fsl 440 (570)
.-.|. .|++.|..
T Consensus 19 ~~~C~~~~C~k~f~~ 33 (73)
T 1f2i_G 19 PYACPVESCDRRFSR 33 (73)
T ss_dssp CEECSSTTBCCEESS
T ss_pred ccCCcCCCCCCccCC
Confidence 35786 59998864
No 239
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.09 E-value=18 Score=29.65 Aligned_cols=36 Identities=22% Similarity=0.512 Sum_probs=23.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEE
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIA 464 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~ 464 (570)
...|.+|-..|..-. ...-..||+.||..|....+.
T Consensus 5 ~~~C~IC~~~~~~~~-~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQ-MTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp BCCCSSSCCCCBGGG-EEEETTTTEEEEHHHHHHHHH
T ss_pred CcCCcccCccccccc-ceEcCCCCCcccHHHHHHHHH
Confidence 457999977664221 112236999999999876543
No 240
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=27.66 E-value=22 Score=28.76 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCccccccCccccCcccc-ccccccCceeccCCCcceEEeccCCCCCceeeccccHHHHH
Q 008333 427 AVSKCTACGTDFSAFVRK-HHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEVT 485 (570)
Q Consensus 427 ~~~~C~~C~~~Fsl~~RK-HHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l~ 485 (570)
+...|.+|-..|+....+ .-| .||+.||..|....+. .....|-.|.+.+.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~-------~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT-------DENGLCPACRKPYP 61 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT-------SSCSBCTTTCCBCS
T ss_pred cCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh-------cCCCCCCCCCCccC
Confidence 345899999888653222 224 6999999999764321 12356888876543
No 241
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=27.52 E-value=16 Score=31.98 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=18.7
Q ss_pred CccccccCccccCccc----cccccccCceeccC
Q 008333 428 VSKCTACGTDFSAFVR----KHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~R----KHHCR~CG~vfC~~ 457 (570)
...|..|++. .+.| .-||+.||+.|-.-
T Consensus 36 ky~CpfCgk~--~vKR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 36 KYGCPFCGKV--AVKRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp CEECTTTCCE--EEEEEETTEEEETTTTEEEECC
T ss_pred CCCCCCCCCc--eeeecCcceEEcCCCCCEEeCC
Confidence 3479999864 2333 45899999987544
No 242
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.35 E-value=23 Score=24.02 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=9.1
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 11 ~~C~~C~k~f~~ 22 (45)
T 2epq_A 11 YSCPVCGLRFKR 22 (45)
T ss_dssp SEETTTTEECSC
T ss_pred CcCCCCCcccCC
Confidence 468888888864
No 243
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.24 E-value=29 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=19.2
Q ss_pred CccccccCccccCcc-ccccccccCc
Q 008333 428 VSKCTACGTDFSAFV-RKHHCRNCGD 452 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~-RKHHCR~CG~ 452 (570)
.-.|..|++.|.+-. ....|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 458999999998653 3578888875
No 244
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.06 E-value=28 Score=28.42 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=8.8
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 8 ~~C~~C~~~f~~ 19 (124)
T 2dlq_A 8 VECPTCHKKFLS 19 (124)
T ss_dssp CCCTTTCCCCSS
T ss_pred CCCCCCCCcCCC
Confidence 468888888863
No 245
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.98 E-value=14 Score=38.37 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=0.0
Q ss_pred ccCcccccccccccCCCCCccccCCCCCccccccC
Q 008333 536 ACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 570 (570)
Q Consensus 536 ~~pt~wv~l~v~Vp~~Dsev~~C~iC~q~F~~~~r 570 (570)
..+..| || |.++..|..|+.+|+++.|
T Consensus 364 ~~~p~w------~~--~~~~~~c~~c~~~f~~~~r 390 (434)
T 3mpx_A 364 ERPPTL------VP--VTHVMMCMNCGCDFSLTLR 390 (434)
T ss_dssp -----------------------------------
T ss_pred cCCCcC------CC--cccCCcCCCcCCCCCCcch
Confidence 345568 44 8899999999999998765
No 246
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=26.76 E-value=19 Score=38.11 Aligned_cols=45 Identities=20% Similarity=0.568 Sum_probs=30.6
Q ss_pred ccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|. ..-.-.||++||..|...... ...+.|-.|...+
T Consensus 333 ~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~-------~~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAENDK----DVKIEPCGHLMCTSCLTSWQE-------SEGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSBC----CEEEETTCCEECHHHHHHHHH-------HTCSBCTTTCCBC
T ss_pred CCCCccCcCCC----CeEEeCCCChhhHHHHHHHHh-------cCCCCCCCCCCcc
Confidence 58999987663 334568999999999864321 0235687776543
No 247
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.73 E-value=27 Score=28.29 Aligned_cols=26 Identities=35% Similarity=0.810 Sum_probs=14.7
Q ss_pred ccccccCccccCc------------cccccccccCceec
Q 008333 429 SKCTACGTDFSAF------------VRKHHCRNCGDIFC 455 (570)
Q Consensus 429 ~~C~~C~~~Fsl~------------~RKHHCR~CG~vfC 455 (570)
-.| .|++.|... .+.+.|..||+.|-
T Consensus 11 ~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 48 (110)
T 2csh_A 11 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK 48 (110)
T ss_dssp EEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEES
T ss_pred Eec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccC
Confidence 357 677777532 12345666666653
No 248
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=26.73 E-value=16 Score=32.78 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=31.6
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.-.|.+|...|..-.. -.||.+||..|....+. .....|-.|...+
T Consensus 31 ~~~C~IC~~~~~~pv~----~~CgH~FC~~Ci~~~~~-------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLRRPFQ----AQCGHRYCSFCLASILS-------SGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHGG-------GSCEECHHHHHTT
T ss_pred CcCCCCCChhhcCcEE----CCCCCccCHHHHHHHHh-------cCCCCCCCCCCcc
Confidence 4579999887753322 38999999999876431 1235788887643
No 249
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=26.63 E-value=24 Score=30.75 Aligned_cols=26 Identities=27% Similarity=0.852 Sum_probs=19.8
Q ss_pred CccccccCccccCccccccccccCceeccC
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~ 457 (570)
...|..|.+.=+++ -|-.||.|.|++
T Consensus 24 ~~~C~~C~~~~~~W----~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENW----VCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEE----EETTTCCEEECT
T ss_pred CCcCccccCCCCee----eeeecCccccCC
Confidence 45799998764443 399999999975
No 250
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.60 E-value=30 Score=28.28 Aligned_cols=9 Identities=0% Similarity=-0.105 Sum_probs=6.3
Q ss_pred cccccCccc
Q 008333 430 KCTACGTDF 438 (570)
Q Consensus 430 ~C~~C~~~F 438 (570)
.|..|++.|
T Consensus 52 ~C~~C~~~f 60 (115)
T 2dmi_A 52 TDNNNPKRW 60 (115)
T ss_dssp CCCCCCSCC
T ss_pred cCCCCCccc
Confidence 377777776
No 251
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=26.41 E-value=22 Score=30.54 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCcccCCCCccccccCccccCcc----------c----cccccccCceeccCCCcceEEeccCCCCCceeeccccHH
Q 008333 420 DHWVPDEAVSKCTACGTDFSAFV----------R----KHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMA 482 (570)
Q Consensus 420 ~~Wvpd~~~~~C~~C~~~Fsl~~----------R----KHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~ 482 (570)
..|.-|.+...|.+|...|...- . ...--.||++|+..|....+. ....|-.|..
T Consensus 29 ~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--------~~~~CP~Cr~ 97 (106)
T 3dpl_R 29 ALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--------TRQVCPLDNR 97 (106)
T ss_dssp EEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--------TCSBCSSSCS
T ss_pred eEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--------cCCcCcCCCC
Confidence 35666667789999998886431 0 011246999999999875531 1245777654
No 252
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.16 E-value=36 Score=26.34 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=14.9
Q ss_pred CccccccCc-cc--cCccccccccccCcee
Q 008333 428 VSKCTACGT-DF--SAFVRKHHCRNCGDIF 454 (570)
Q Consensus 428 ~~~C~~C~~-~F--sl~~RKHHCR~CG~vf 454 (570)
+..|..|+. .+ ..-....-|..||.|+
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 447999965 32 2223345566666654
No 253
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=25.63 E-value=24 Score=29.01 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=19.4
Q ss_pred CccccccCcc-cc-CccccccccccCceeccC
Q 008333 428 VSKCTACGTD-FS-AFVRKHHCRNCGDIFCDK 457 (570)
Q Consensus 428 ~~~C~~C~~~-Fs-l~~RKHHCR~CG~vfC~~ 457 (570)
...|..|++. +. .-...-+|++||+.|=.-
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 4589999862 11 112346899999988544
No 254
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.53 E-value=26 Score=26.51 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=8.9
Q ss_pred ccccc--cCccccC
Q 008333 429 SKCTA--CGTDFSA 440 (570)
Q Consensus 429 ~~C~~--C~~~Fsl 440 (570)
-.|.. |++.|..
T Consensus 39 ~~C~~~~C~k~f~~ 52 (79)
T 2dlk_A 39 FSCPEPACGKSFNF 52 (79)
T ss_dssp EECSCTTTCCEESS
T ss_pred eECCCCCCcCccCC
Confidence 46877 8888864
No 255
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.15 E-value=33 Score=26.40 Aligned_cols=26 Identities=27% Similarity=0.736 Sum_probs=15.6
Q ss_pred CccccccCcc-c-cCccccccccccCce
Q 008333 428 VSKCTACGTD-F-SAFVRKHHCRNCGDI 453 (570)
Q Consensus 428 ~~~C~~C~~~-F-sl~~RKHHCR~CG~v 453 (570)
...|..|+.. | ....-|++|.+||..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 5679999862 2 111236677777665
No 256
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.01 E-value=29 Score=28.05 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=7.8
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 17 ~~C~~C~~~f~~ 28 (107)
T 1wjp_A 17 YQCRLCNAKLSS 28 (107)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 357777777753
No 257
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=24.82 E-value=15 Score=29.04 Aligned_cols=40 Identities=23% Similarity=0.610 Sum_probs=26.8
Q ss_pred ccccccCccccCccccccccccCce-eccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~v-fC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
..|.+|...|... ---.||++ ||..|.... +.|-.|...+
T Consensus 25 ~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP~Cr~~i 65 (74)
T 4ic3_A 25 KLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCPMCYTVI 65 (74)
T ss_dssp TBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCTTTCCBC
T ss_pred CCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCCCcCcCc
Confidence 4799998766432 22379999 999997532 5666666443
No 258
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=24.51 E-value=16 Score=27.88 Aligned_cols=28 Identities=29% Similarity=0.839 Sum_probs=19.5
Q ss_pred ccccccCccccCccccccccccCce-eccCCC
Q 008333 429 SKCTACGTDFSAFVRKHHCRNCGDI-FCDKCT 459 (570)
Q Consensus 429 ~~C~~C~~~Fsl~~RKHHCR~CG~v-fC~~CS 459 (570)
-.|..|++. +.+|.||..|-.. +|..|-
T Consensus 7 ~~Cd~C~~~---ig~R~~C~~C~dyDLC~~C~ 35 (52)
T 1tot_A 7 YTCNECKHH---VETRWHCTVCEDYDLCINCY 35 (52)
T ss_dssp EEETTTTEE---ESSEEEESSSSSCEECHHHH
T ss_pred EECCCCCCC---CcceEEcCCCCCchhHHHHH
Confidence 478899886 3567888888654 555553
No 259
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=24.42 E-value=15 Score=31.26 Aligned_cols=35 Identities=26% Similarity=0.714 Sum_probs=25.0
Q ss_pred CccccccCccccCc---cccccccccCceeccCCCcce
Q 008333 428 VSKCTACGTDFSAF---VRKHHCRNCGDIFCDKCTHGR 462 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~---~RKHHCR~CG~vfC~~CS~~~ 462 (570)
...|.+|...|..- .+.-.--.||++||..|....
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 44 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 44 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHH
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHH
Confidence 45799998887542 122245689999999998754
No 260
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=24.16 E-value=19 Score=30.55 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=30.3
Q ss_pred CccccccCccccCccccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
...|.+|...|..-.. -.||++||..|....+... .+.|-.|...+
T Consensus 23 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~-------~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHILADPVE----TSCKHLFCRICILRCLKVM-------GSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBCSSEEE----CTTSCEEEHHHHHHHHHHT-------CSBCTTTCCBC
T ss_pred CCCCCCCCcHhcCcEE----cCCCCcccHHHHHHHHhHC-------cCcCCCCCCCC
Confidence 3479999887753322 3799999999986543211 24677776544
No 261
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.70 E-value=33 Score=33.64 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=19.2
Q ss_pred CccccccCccccC-----c---cccccccccCceec
Q 008333 428 VSKCTACGTDFSA-----F---VRKHHCRNCGDIFC 455 (570)
Q Consensus 428 ~~~C~~C~~~Fsl-----~---~RKHHCR~CG~vfC 455 (570)
...|.+|+..... + ..-..|-+||+|+-
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILY 233 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEE
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEE
Confidence 3589999987652 1 12467888888864
No 262
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.69 E-value=35 Score=27.61 Aligned_cols=28 Identities=36% Similarity=1.072 Sum_probs=20.4
Q ss_pred CccccccCccccCcccccccccc-CceeccCCCc
Q 008333 428 VSKCTACGTDFSAFVRKHHCRNC-GDIFCDKCTH 460 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKHHCR~C-G~vfC~~CS~ 460 (570)
-.-|.+|... .. ..|.-| |.+||..|-.
T Consensus 8 ~pWC~ICneD--At---lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 8 LPWCCICNED--AT---LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CSSCTTTCSC--CC---EEETTTTSEEECSSHHH
T ss_pred CCeeEEeCCC--Ce---EEecCCCCceehHHHHH
Confidence 4458889775 22 568888 8999988864
No 263
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=23.64 E-value=26 Score=29.37 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=9.0
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 75 ~~C~~C~k~f~~ 86 (129)
T 2wbt_A 75 FVCPLCLMPFSS 86 (129)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 368888888864
No 264
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=23.59 E-value=24 Score=30.25 Aligned_cols=23 Identities=43% Similarity=1.024 Sum_probs=17.1
Q ss_pred cccccCccccCccc--cccccccCce
Q 008333 430 KCTACGTDFSAFVR--KHHCRNCGDI 453 (570)
Q Consensus 430 ~C~~C~~~Fsl~~R--KHHCR~CG~v 453 (570)
.|. |+.+...+.| +++|++||..
T Consensus 50 kC~-C~~Rt~sl~r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 50 KCP-CGNRTISLDRLPKKHCSTCGLF 74 (92)
T ss_dssp ECT-TSCEEEESSSSCCSCCTTTCSC
T ss_pred ECC-CCCceeEeeeCCCCCCCCCCCC
Confidence 586 8876655555 7899999986
No 265
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.41 E-value=51 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=14.2
Q ss_pred CCcccC-CCCccccccCccccC
Q 008333 420 DHWVPD-EAVSKCTACGTDFSA 440 (570)
Q Consensus 420 ~~Wvpd-~~~~~C~~C~~~Fsl 440 (570)
-.|... .....|..|++.|..
T Consensus 16 c~~~~~~~~~~~C~~C~k~f~~ 37 (95)
T 2ej4_A 16 CKWIDEAQLSRPKKSCDRTFST 37 (95)
T ss_dssp CCCCCSSCSSSSCCCCCCCCSS
T ss_pred eEeecCCcCCCcccccccccCC
Confidence 457643 234579999999974
No 266
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=23.38 E-value=14 Score=31.58 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=36.1
Q ss_pred CCCccccccCccccCcc---ccccccccCceeccCCCcceEEeccCCCCCceeeccccHHHH
Q 008333 426 EAVSKCTACGTDFSAFV---RKHHCRNCGDIFCDKCTHGRIALTADANAQPVRVCDRCMAEV 484 (570)
Q Consensus 426 ~~~~~C~~C~~~Fsl~~---RKHHCR~CG~vfC~~CS~~~~~Lp~~~~~~pvRVC~~Cy~~l 484 (570)
.....|.+|+-..++.. --.-|..|+.-+|..|..+... +-..+|-.|....
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-------eG~q~CpqCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-------EGTQNCPQCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-------TSCSSCTTTCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-------ccCccccccCCcc
Confidence 34679999998766542 2467999999999999876532 2246777776443
No 267
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.22 E-value=29 Score=30.24 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=18.3
Q ss_pred CccccccCccccCccccc-cccccCce
Q 008333 428 VSKCTACGTDFSAFVRKH-HCRNCGDI 453 (570)
Q Consensus 428 ~~~C~~C~~~Fsl~~RKH-HCR~CG~v 453 (570)
.-.|..|+..|....+.. .|-.||..
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 347889999888766555 67777653
No 268
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=22.99 E-value=30 Score=29.71 Aligned_cols=7 Identities=57% Similarity=1.630 Sum_probs=3.8
Q ss_pred ccccCce
Q 008333 447 CRNCGDI 453 (570)
Q Consensus 447 CR~CG~v 453 (570)
||.||+.
T Consensus 19 CrRCG~~ 25 (94)
T 4a18_A 19 CRRCGKA 25 (94)
T ss_dssp CTTTCSE
T ss_pred ecCcCch
Confidence 5555554
No 269
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.99 E-value=23 Score=29.99 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=10.0
Q ss_pred CccccccCccccC
Q 008333 428 VSKCTACGTDFSA 440 (570)
Q Consensus 428 ~~~C~~C~~~Fsl 440 (570)
.-.|..|++.|..
T Consensus 18 py~C~~Cgk~F~~ 30 (102)
T 2ghf_A 18 GYECKYCTFQTPD 30 (102)
T ss_dssp SEECSSCSCEESC
T ss_pred CcCCCCCCCccCC
Confidence 3479999998864
No 270
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=22.93 E-value=38 Score=34.68 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=21.8
Q ss_pred cccCCC-CccccccCcc-----ccCccccccccccCceec
Q 008333 422 WVPDEA-VSKCTACGTD-----FSAFVRKHHCRNCGDIFC 455 (570)
Q Consensus 422 Wvpd~~-~~~C~~C~~~-----Fsl~~RKHHCR~CG~vfC 455 (570)
|.++-. ...|..|+.. +..-.+..-|..||.|+=
T Consensus 14 ~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 14 RGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ---CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred cCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 777655 6689999774 333456677888888873
No 271
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.42 E-value=32 Score=28.52 Aligned_cols=31 Identities=35% Similarity=0.962 Sum_probs=24.1
Q ss_pred cccccCccccCccccccccccCc----eeccCCCcc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGD----IFCDKCTHG 461 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~----vfC~~CS~~ 461 (570)
.|..|++. .+..+|.+|..|-. -+|..|-..
T Consensus 23 ~Cd~C~~~-pI~G~RykC~~C~d~~~yDLC~~C~~~ 57 (82)
T 2fc7_A 23 KCDNCGIE-PIQGVRWHCQDCPPEMSLDFCDSCSDC 57 (82)
T ss_dssp CCSSSCCS-SEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred CCCCCCCC-cceeceEECCcCCCCcceecHHHHHhC
Confidence 78899752 45668999999976 599999754
No 272
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=22.27 E-value=34 Score=29.87 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=9.6
Q ss_pred ccccccCccccC
Q 008333 429 SKCTACGTDFSA 440 (570)
Q Consensus 429 ~~C~~C~~~Fsl 440 (570)
-.|..|++.|..
T Consensus 51 ~~C~~C~k~F~~ 62 (133)
T 2lt7_A 51 YPCRYCEKVFPL 62 (133)
T ss_dssp EECSSSSCEESS
T ss_pred eeCCccCeeccc
Confidence 369999999875
No 273
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.16 E-value=29 Score=23.81 Aligned_cols=21 Identities=29% Similarity=0.854 Sum_probs=15.0
Q ss_pred cccccCccccCccccccccccCc
Q 008333 430 KCTACGTDFSAFVRKHHCRNCGD 452 (570)
Q Consensus 430 ~C~~C~~~Fsl~~RKHHCR~CG~ 452 (570)
.|..|+. .-|.||..|.+||.
T Consensus 7 ~C~~C~~--~Nfa~r~~C~~C~~ 27 (32)
T 2lk0_A 7 LCNKCCL--NNFRKRLKCFRCGA 27 (32)
T ss_dssp ECTTTCC--EEETTCCBCTTTCC
T ss_pred CcCcCcC--CcChhcceecCCCC
Confidence 3556643 56778899999986
No 274
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.88 E-value=27 Score=23.30 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=7.7
Q ss_pred cccCCCCCcc
Q 008333 556 IECGVCQHPF 565 (570)
Q Consensus 556 ~~C~iC~q~F 565 (570)
+.|++|||-.
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 4699999853
No 275
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.41 E-value=26 Score=30.68 Aligned_cols=22 Identities=41% Similarity=0.907 Sum_probs=0.0
Q ss_pred ccccCcee---------ccCCCcceEEeccC
Q 008333 447 CRNCGDIF---------CDKCTHGRIALTAD 468 (570)
Q Consensus 447 CR~CG~vf---------C~~CS~~~~~Lp~~ 468 (570)
|+.||..| |-.|-+..+..|.+
T Consensus 70 C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 70 CRKCGFVFKAEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp BTTTCCBCCCCSSCCSSCSSSCCCCBCCCCE
T ss_pred hhhCcCeecccCCCCCCCcCCCCCccCCcce
No 276
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.17 E-value=50 Score=31.56 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=13.0
Q ss_pred cccCCCCCccccccC
Q 008333 556 IECGVCQHPFLVSAH 570 (570)
Q Consensus 556 ~~C~iC~q~F~~~~r 570 (570)
..|.+|++.|+++.|
T Consensus 162 ~~C~~C~~~F~~~~r 176 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNR 176 (220)
T ss_dssp SBCTTTCCBCCSSSC
T ss_pred CccCCCCCccCCccc
Confidence 389999999998765
Done!