BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008334
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 432 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 483
D +++R + I R VL V V A+NL D G +DPYV L + KSE++ KT+
Sbjct: 155 DHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 214
Query: 484 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVILEG 538
+ LNP WN+TF F +++ D L E+WD D T D+MG ++ + G
Sbjct: 215 TIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG 271
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 267 AKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IVEDESTQH 323
AK L D G SDPY L + P P E +K+KTI + LNP WNE F F + E + +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 324 LVVRIYDDEGIQSSELIGCAQVRLCELE 351
L V I+D + ++ +G + EL+
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGISELQ 268
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 432 DASQKRREVII-----RGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTR 483
D+ ++R + I R VL V V A+NL D G +DPYV L + KSE++ KT+
Sbjct: 14 DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73
Query: 484 VVNDCLNPIWNQTFDFVVEDGLHD-MLIAEVWDHD-TFGKDYMG 525
+ LNP WN+TF F +++ D L E+WD D T D+MG
Sbjct: 74 TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 267 AKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEF-IVEDESTQH 323
AK L D G SDPY L + P P E +K+KTI LNP WNE F F + E + +
Sbjct: 40 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 324 LVVRIYDDEGIQSSELIGCAQVRLCELE 351
L V I+D + ++ +G + EL+
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGISELQ 127
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 274 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 334 IQSSELIGCAQVRLCELEPG 353
+ E +G A + ++ G
Sbjct: 82 VM-DETLGTATFTVSSMKVG 100
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 460 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518
D++ DPYV L + + ++R +TR N+ +NP+WN+TF+F+++ ++L + D +
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81
Query: 519 FGKDYMGRCILTLTRV 534
+ +G T++ +
Sbjct: 82 VMDETLGTATFTVSSM 97
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 424 TEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM-KKSETRNKT 482
TE + EK + ++ G L V VI A L A GK++PY ++M +S T T
Sbjct: 367 TEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYT---T 423
Query: 483 RVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGE 539
R + D LNP WN F ++D D+L ++D D F D++GR + + ++ E E
Sbjct: 424 RTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQE 481
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
+G L V +++A L GKS+PY + + ++ ++TI + LNP WN + +F +
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEI---SMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQV 345
+D L + ++D + + +G ++
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 274 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 334 IQSSELIGCAQVRLCELEPG 353
+ E +G A + ++ G
Sbjct: 97 VM-DETLGTATFTVSSMKVG 115
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 460 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518
D++ DPYV L + + ++R +TR N+ +NP+WN+TF+F+++ ++L + D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDYMGRCILTLT 532
+ +G T++
Sbjct: 97 VMDETLGTATFTVS 110
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 274 DLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333
D++ DPY LF+ P+ K+++ NND+NP+WNE FEFI++ L + + D
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 334 IQSSELIGCAQVRLCELEPG 353
+ E +G A + ++ G
Sbjct: 97 VM-DETLGTATFTVSSMKVG 115
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 460 DLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518
D++ DPYV L + + ++R +TR N+ +NP+WN+TF+F+++ ++L + D +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 96
Query: 519 FGKDYMGRCILTLTRV 534
+ +G T++ +
Sbjct: 97 VMDETLGTATFTVSSM 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
L VTV A+NL D G +DPYV L + K+E++ KT+ + LNP WN++F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 503 DGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVI 535
D L E+WD D T D+MG ++ ++
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 112
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 317
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 318 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
+ + L V I+D + ++ +G + EL
Sbjct: 78 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
L VTV A+NL D G +DPYV L + K+E++ KT+ + LNP WN++F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 503 DGLHD-MLIAEVWDHD-TFGKDYMGRCILTLTRVI 535
D L E+WD D T D+MG ++ ++
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELM 113
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 317
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 318 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
+ + L V I+D + ++ +G + EL
Sbjct: 79 PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
P GTLEV LV AKGL + D + DPY L R +K+ ++ + P WNE F F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT--TPEWNETFIFT 65
Query: 316 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGXXXXXXXXXXXXXXXQRDTKYR 375
V E T L +I+D + + +G A + LEP +D +Y+
Sbjct: 66 V-SEGTTELKAKIFDKDVGTEDDAVGEATIP---LEP--VFVEGSIPPTAYNVVKDEEYK 119
Query: 376 GQVHLELLYCPFG 388
G++ + L + P G
Sbjct: 120 GEIWVALSFKPSG 132
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLN--PIWNQTFDFV 500
G L V ++ A+ L +D + DPYV LT + T+++ V + + P WN+TF F
Sbjct: 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT 65
Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 538
V +G + L A+++D D + D +G + L V +EG
Sbjct: 66 VSEGTTE-LKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
+ VTV A NL D G +DPYV L + ++ T+ KTR V LNP+WN+TF F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 503 DG-LHDMLIAEVWDHD-TFGKDYMG 525
G + L EVWD D T D+MG
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMG 106
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVE 317
+ V + +A+ L D G SDPY L + P P +K++T+ LNP+WNE F F ++
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLK 81
Query: 318 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
+ + L V ++D + ++ +G + EL
Sbjct: 82 PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED 503
G+L V V+ A +L A+D GK+DP+ +L + R +T V LNP WN+ F F ++D
Sbjct: 13 GILQVKVLKAADLLAADFSGKSDPFCLLEL--GNDRLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 504 GLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 534
+HD+L V+D D D++G+ + L +
Sbjct: 71 -IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 250 SELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN 309
S ++K VG L+VK+++A L D GKSDP+ +L L ++ T+ +LNP WN
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLL---ELGNDRLQTHTVYKNLNPEWN 61
Query: 310 EHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
+ F F ++D L V ++D++G + + +G + L + G
Sbjct: 62 KVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDG 104
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDFVVE 502
L VTV A+NL D G +DPYV L + K+E++ KT+ + LNP WN++F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 503 DGLHD-MLIAEVWDHD-TFGKDYMG 525
D L E+WD D T D+ G
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXG 104
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE 317
L V + AK L D G SDPY L + P P E +K+KTI + LNP WNE F F ++
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 318 -DESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
+ + L V I+D + ++ G + EL
Sbjct: 80 PSDKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
+S+TV+ A+ L A D G +DPYV + + K++ R KT N LNP+W + F F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN--LNPVWEENFHFECHNS- 75
Query: 506 HDMLIAEVWDHDTFGK------------DYMGRCILTLTRVILEGEYTDCFELD-----G 548
D + V D D K D++G+ I+ + L GE + LD
Sbjct: 76 SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR--TLSGEMDVWYNLDKRTDKS 133
Query: 549 TKSGKLKLHL 558
SG ++LH+
Sbjct: 134 AVSGAIRLHI 143
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
+ + +V A+GL KD G SDPY + V + K++KTI +LNP+W E+F F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHN- 74
Query: 320 STQHLVVRIYD-DEGIQS 336
S+ + VR+ D D+ I+S
Sbjct: 75 SSDRIKVRVLDEDDDIKS 92
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTK----KSKTINNDLNPIWNEHFEFI 315
L VK+V L KD+ G SDPY L + E + ++KTI LNP WNE F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 316 VEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDT 372
V + S L+ ++D+ + + +G V L L +P +
Sbjct: 83 V-NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKS 141
Query: 373 KYRGQVHLELLYCP 386
+ +G + L++ Y P
Sbjct: 142 RVKGFLRLKMAYMP 155
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 445 VLSVTVILAENLPASDLMGKADPYVVLTMK-KSETRN----KTRVVNDCLNPIWNQTFDF 499
+L V V+ +L D+ G +DPYV L++ E R +T+ + LNP WN+ F F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 500 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV-----ILEGEYTDCFELDGTKS-- 551
V H +L EV+D + + D++G+ + L+ + +E YT L +S
Sbjct: 82 RVNPSNHRLLF-EVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHK 140
Query: 552 ----GKLKLHLKWMP 562
G L+L + +MP
Sbjct: 141 SRVKGFLRLKMAYMP 155
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTF---DF 499
L+V ++ A+ LPA D G +DP+V + + + + +T+V LNP WN+TF F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 500 VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 536
E + +L +V D+D F + D +G + L +V L
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF---EF 314
TL VK+++A+ L KD G SDP+ +++ P + ++K +LNP WNE F F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 315 IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 351
E + L +++ D + ++ IG + L +++
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 305
++S L + L+ +++AKGL D G +DPY L + P K+ K +KT+ N N
Sbjct: 19 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 306 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 351
P+WNE ++ ED + L + + D++ +E IG + L +L+
Sbjct: 79 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 499
L T+I A+ L D G ADPYV L + +++ +T+ + + NP+WN+T +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 500 VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 534
ED L V D D FG +++G +L ++
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK--SKTINNDLN 305
++S L + L+ +++AKGL D G +DPY L + P K+ K +KT+ N N
Sbjct: 17 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 306 PIWNEHFEF---IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
P+WNE ++ ED + L + + D++ +E IG + L +L+
Sbjct: 77 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN 127
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRN---KTRVVNDCLNPIWNQTFDF--- 499
L T+I A+ L D G ADPYV L + +++ +T+ + + NP+WN+T +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 500 VVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRV 534
ED L V D D FG +++G +L ++
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
E G +++A V+D D F K D +G + + V
Sbjct: 96 ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 128
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
E G +++A V+D D F K D +G + + V
Sbjct: 104 ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 136
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
E G +++A V+D D F K D +G + + V
Sbjct: 96 ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 128
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
+ + + LV+ +YD + ++IG +V + ++ G
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 502
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 503 DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
+ L+ V+D D F K D +G + + V
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 438 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWN 494
R V G L+V ++ A+NL D+ G +DPYV + + ++ + KT + + LNP +N
Sbjct: 144 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 203
Query: 495 QTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 529
++F F V E ++ V D+D GK D +G+ +
Sbjct: 204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 241
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 316 VEDESTQ--HLVVRIYDDEGIQSSELIG 341
V E Q +VV + D + I ++ IG
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V ++QA L D+ G SDPY +F+ P +K ++K LNP++NE F F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
+ + LV+ +YD + ++IG +V + ++ G
Sbjct: 79 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 114
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--- 501
L V +I A LPA D+ G +DPYV V + + + +T+V LNP++N+ F F V
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 78
Query: 502 EDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534
E G +++A V+D D F K D +G + + V
Sbjct: 79 ELGGKTLVMA-VYDFDRFSKHDIIGEFKVPMNTV 111
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 305
++S L G L V +++A L DL G SDPY A L K +K+ N LN
Sbjct: 143 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 202
Query: 306 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 345
P +NE F V ES ++ L + + D + I +E+IG +V
Sbjct: 203 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 498
G+L+VT+I A NL A DL G +DPYV +++ + + KT + + LNP +N+ FD
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 499 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 527
E + L V D+D G + +G C
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 242
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 318 DESTQHLVVRIYDDEGIQSSELIG 341
+ + + L +YD + +LIG
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIG 106
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 19/121 (15%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 502
L V ++ A +LPA D G +DPYV + + + + +T+V LNPI+N+TF F V
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 503 DGLHDMLIAEVWDHDTFGK-DYMGRCILT-------------LTRVILEG--EYTDCFEL 546
+ L V+D D F + D +G+ +L L R ILEG E D EL
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 142
Query: 547 D 547
+
Sbjct: 143 N 143
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 248 DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPY--AVLFVRPLPEKTKKSKTINNDLN 305
++S L G L V +++A L DL G SDPY A L K +K+ N LN
Sbjct: 142 NFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN 201
Query: 306 PIWNEHFEFIVEDESTQH--LVVRIYDDEGIQSSELIGCAQV 345
P +NE F V ES ++ L + + D + I +E+IG +V
Sbjct: 202 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQT--FD 498
G+L+VT+I A NL A DL G +DPYV +++ + + KT + + LNP +N+ FD
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 499 FVVEDGLHDMLIAEVWDHDTFG-KDYMGRC 527
E + L V D+D G + +G C
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVC 241
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV--E 317
L V+++QA L KD G SDPY +++ P +K ++K LNPI+NE F+F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 318 DESTQHLVVRIYDDEGIQSSELIG 341
+ + + L +YD + +LIG
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIG 105
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 19/121 (15%)
Query: 446 LSVTVILAENLPASDLMGKADPYV-VLTMKKSETRNKTRVVNDCLNPIWNQTFDFVV--E 502
L V ++ A +LPA D G +DPYV + + + + +T+V LNPI+N+TF F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 503 DGLHDMLIAEVWDHDTFGK-DYMGRCILT-------------LTRVILEG--EYTDCFEL 546
+ L V+D D F + D +G+ +L L R ILEG E D EL
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 141
Query: 547 D 547
+
Sbjct: 142 N 142
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYV------------VLTMKKSETRNKTRVVNDCLNP 491
G L + ++ A NL D G +DP+V V+ +E + +T+ V LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 492 IWNQTFDF---VVEDGLHDMLIAEVWDHDTF-GKDYMGRCILTLT 532
WNQT + +E + L VWD+D F D++G ++ L+
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-----------LPEKTKKSKTINNDLN 305
+G L + ++QA+ L +D G SDP+ +++ P E +++K + LN
Sbjct: 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 306 PIWNE---HFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLC 348
P WN+ + +E + L V ++D + S++ +G + L
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIV 316
+ V+++ GL KD++G SDPY V P+ + ++KTI LNP WNE F V
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 317 EDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXXXXXXQRDTK 373
+ L+ ++D+ + + +G V L L P ++
Sbjct: 82 HPQQ-HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140
Query: 374 YRGQVHLELLYCP 386
+G + L++ Y P
Sbjct: 141 VKGYLRLKMTYLP 153
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 445 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 500
++ V VI L D++G +DPYV +T M T +T+ + LNP WN+ F
Sbjct: 21 IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 531
V H +L EV+D + + D++G+ + L
Sbjct: 81 VHPQQHRLLF-EVFDENRLTRDDFLGQVDVPL 111
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
+ +TV+ A+NL D DP+ + + S + T V + L+P WNQ +D V G
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV--GK 64
Query: 506 HDMLIAEVWDHDTF----GKDYMGRCILTLTRVI 535
D + VW+H G ++G C+ L+ I
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLG-CVRLLSNAI 97
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
+ + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYV--G 63
Query: 320 STQHLVVRIYDDEGI---QSSELIGCAQV 345
T + + +++ + I Q + +GC ++
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRL 92
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL 505
L +TV+ A+NL D DP+ + + S + T V + L+P WNQ +D + G
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYI--GK 62
Query: 506 HDMLIAEVWDHDTF----GKDYMGRCILTLTRVILEGEYTDCFELDGTKSG 552
D + VW+H G ++G C+ L+ I + T LD K G
Sbjct: 63 SDSVTISVWNHKKIHKKQGAGFLG-CVRLLSNAINRLKDTGYQRLDLCKLG 112
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
L + ++ AK L KD DP+A + V + + T+ N L+P WN+H++ +
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDG-SGQCHSTDTVKNTLDPKWNQHYDLYIGKS 63
Query: 320 STQHLVVRIYDDEGI---QSSELIGCAQV 345
+ + + +++ + I Q + +GC ++
Sbjct: 64 DS--VTISVWNHKKIHKKQGAGFLGCVRL 90
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTF-- 497
+G L V +I +L A D G +DP+V L +K + ++KT++ LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 532
D D L VWD+D GK DY+G C L ++
Sbjct: 96 DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 251 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYA-VLFVRPLPE--KTKKSKTINNDLNPI 307
EL + VK++ GL KD++G SDPY V P+ + ++KTI LNP
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPK 60
Query: 308 WNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL---EPGXXXXXXXXXXX 364
WNE F V + ++ ++D+ + + +G V L L P
Sbjct: 61 WNEEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119
Query: 365 XXXXQRDTKYRGQVHLELLYCP 386
++ +G + L++ Y P
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLP 141
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 445 VLSVTVILAENLPASDLMGKADPYVVLT----MKKSETRNKTRVVNDCLNPIWNQTFDFV 500
V+ V VI L D++G +DPYV +T M T +T+ + LNP WN+ F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 501 VEDGLHDMLIAEVWDHDTFGK-DYMGRCILTL 531
V H +L EV+D + + D++G+ + L
Sbjct: 69 VLPQRHRILF-EVFDENRLTRDDFLGQVDVPL 99
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 497
+G L V +I +L A D G +DP+V L +K + ++KT++ LNP +N+ F
Sbjct: 36 QGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY 95
Query: 498 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 532
D D L VWD+D GK DY+G C L ++
Sbjct: 96 DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 131
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTF-- 497
+G L V +I +L A D G +DP+V L +K + ++KT++ LNP +N+ F
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73
Query: 498 DFVVEDGLHDMLIAEVWDHDTFGK--DYMGRCILTLT 532
D D L VWD+D GK DY+G C L ++
Sbjct: 74 DIKHSDLAKKSLDISVWDYD-IGKSNDYIGGCQLGIS 109
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 446 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDFV-- 500
L VT++ A++LP+ + +PYV L + + + +T+ V L P WNQTF +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 501 -VEDGLHDMLIAEVWDHDTFGK---DYMGRCILTLTRVILEGEYTDCFELDGTKSG 552
+ ML +WD + +++G ++ L +L+ E ++L SG
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQTHDSG 137
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 446 LSVTVILAENLPASDLMGKADPYV---VLTMKKSETRNKTRVVNDCLNPIWNQTFDFV-- 500
L VT++ A++LP+ + +PYV L + + + +T+ V L P WNQTF +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 501 -VEDGLHDMLIAEVWDHDTFGK---DYMGRCILTLTRVILEGE 539
+ ML +WD + +++G ++ L +L+ E
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 446 LSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWNQTFDF 499
L+V V+ A +LP SD+ G +DPYV + + KK ++ KT V N ++N+ F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 421 ANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---E 477
G +E D R V G L+V ++ A+NL D+ G +DPYV + + ++
Sbjct: 2 GGGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 61
Query: 478 TRNKTRVVNDCLNPIWNQTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 529
+ KT + + LNP +N++F F V E ++ V D+D GK D +G+ +
Sbjct: 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 116
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 316 VEDESTQ--HLVVRIYDDEGIQSSELIG 341
V E Q +VV + D + I ++ IG
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 112
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 438 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWN 494
R V G L+V ++ A+NL D+ G +DPYV + + ++ + KT + + LNP +N
Sbjct: 12 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 71
Query: 495 QTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 529
++F F V E ++ V D+D GK D +G+ +
Sbjct: 72 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 109
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 18 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
Query: 316 VEDESTQ--HLVVRIYDDEGIQSSELIG 341
V E Q +VV + D + I ++ IG
Sbjct: 78 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 105
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 438 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWN 494
R V G L+V ++ A+NL D+ G +DPYV + + ++ + KT + + LNP +N
Sbjct: 11 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYN 70
Query: 495 QTFDFVV--EDGLHDMLIAEVWDHDTFGK-DYMGRCIL 529
++F F V E ++ V D+D GK D +G+ +
Sbjct: 71 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFV 108
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 258 GTLEVKLVQAKGLTNKDLIGKSDPYAV--LFVRPLPEKTKKSKTINNDLNPIWNEHFEFI 315
G L V +++AK L D+ G SDPY L K KK+ N LNP +NE F F
Sbjct: 17 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
Query: 316 VEDESTQ--HLVVRIYDDEGIQSSELIG 341
V E Q +VV + D + I ++ IG
Sbjct: 77 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 104
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 438 REVIIRGVLSVTVILAENLPASDLMGKADPYVVLTM---KKSETRNKTRVVNDCLNPIWN 494
R R L V V NL A G +DPYV + + K+ R KT V LNP+++
Sbjct: 18 RHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFD 76
Query: 495 QTFDFVV 501
Q+FDF V
Sbjct: 77 QSFDFSV 83
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 279 SDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEFIVEDESTQH--LVVRIYDDEGI 334
SDPY +++ P ++ + KT LNP++++ F+F V Q L V + + G
Sbjct: 44 SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGF 103
Query: 335 QSSE--LIGCAQVRLCELE 351
S + L+G V L E
Sbjct: 104 LSKDKGLLGKVLVALASEE 122
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 258 GTLEVKLVQAKGLTNKDLIGKSDP-YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIV 316
G L V +V++ K GK DP +V+F + KK+K ++N+LNP+WNE EF +
Sbjct: 7 GMLRV-IVESASNIPKTKFGKPDPIVSVIFKD----EKKKTKKVDNELNPVWNEILEFDL 61
Query: 317 ED---ESTQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350
+ + L + + D E I ++LIG A V L +L
Sbjct: 62 RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDL 98
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDF 499
G+L V V A N+P + GK DP V + K + KT+ V++ LNP+WN+ +F
Sbjct: 7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKK--KTKKVDNELNPVWNEILEF 59
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 448 VTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDC---LNPIWNQTFDFVV--E 502
V +I A NL A D+ G +DPYV + + + R + + LNPI+N++F F + E
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 503 DGLHDMLIAEVWDHDTFGK-DYMGRCILT 530
+I V D D + D +G+ L+
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGKIYLS 108
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKK-----SKTINNDLNPIWNEH 311
++ V +++A+ L D+ G SDPY ++ L K K+ + T +LNPI+NE
Sbjct: 15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVW---LMYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 312 FEFIVEDESTQH--LVVRIYDDEGIQSSELIG 341
F F + E + +++ + D + + +++IG
Sbjct: 72 FAFDIPTEKLRETTIIITVMDKDKLSRNDVIG 103
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 443 RGVLSVTVILAENLPASDLMG-KADPYVVLT-MKKSETRNKTRVVNDCLNPIWNQTFDF- 499
R V + A LPA D +DPY+ +T + + + + KTRV+ L+P +++TF F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFY 80
Query: 500 ------VVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVIL 536
+ E LH +++ D F + D +G ++ L+ + L
Sbjct: 81 GIPYTQIQELALHFTILS----FDRFSRDDIIGEVLIPLSGIEL 120
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 262 VKLVQAKGLTNKDLIG-KSDPYAVLFVRPLPEKTKKSKT--INNDLNPIWNEHFEF 314
V + +A+GL D SDPY + + LPEK K KT + L+P ++E F F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTI--LPEKKHKVKTRVLRKTLDPAFDETFTF 79
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 463 GKADPYVVLTMKKSETR---NKTRVVNDCLNPIWNQTFDF-VVEDGLHDMLIAEVWD 515
G DPYV +++ ++R KT+ V DC +P +++ F F V E+ L+ VW+
Sbjct: 45 GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWN 101
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy Homolog
E3 Ubiquitin Protein Ligase
Length = 173
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE 319
L++ ++ AK NK PY + V +KT+K NN +P W + IV
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEK---CNNTNSPKWKQPLTVIVTPV 94
Query: 320 STQHLVVRIYDDEGIQSSELIGCAQVRLCE 349
S H R++ + ++S L+G A + + E
Sbjct: 95 SKLHF--RVWSHQTLKSDVLLGTAALDIYE 122
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINND-LNPIWNEH 311
GT+E+K++ A+ L++K + Y + + LP K K+KT+NN+ ++P +NE+
Sbjct: 649 AGTIEIKIISAQFLSDKQI----SSYVEVEMYGLPTDTVRKKFKTKTVNNNGMDPYYNEN 704
Query: 312 FEFIVEDESTQHL-VVRIYDDEGIQSSELIGCAQVRLCELEPG 353
F+ + L VVRI +E + IG + L ++PG
Sbjct: 705 -AFVFKKVVLPDLAVVRIIVNE--DGGKFIGHRLMPLDGIKPG 744
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 251 ELELKPVGTLEVKLV-QAKGLTNKDLIGKSDPY-AVLFVRPLPEKTKKSKTINNDLNPIW 308
++E P LEVK+ +KG+ N+ LI D Y + L V+ + + K +NN LNP
Sbjct: 365 DMEASP---LEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIE---NRYKILNNSLNPAI 418
Query: 309 NEHFEF 314
+E +F
Sbjct: 419 SEDNDF 424
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 251 ELELKPVGTLEVKLV-QAKGLTNKDLIGKSDPY-AVLFVRPLPEKTKKSKTINNDLNPIW 308
++E P LEVK+ +KG+ N+ LI D Y + L V+ + + K +NN LNP
Sbjct: 365 DMEASP---LEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIE---NRYKILNNSLNPAI 418
Query: 309 NEHFEF 314
+E +F
Sbjct: 419 SEDNDF 424
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 260 LEVKLVQAKGLT-------NKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHF 312
L V++++A+ L ++ + S+PY + + P + +K++ P++ E +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 313 EFIVE--DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 351
F + + + L++ + D + +IG V LCE++
Sbjct: 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD 128
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 282 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 334
+ VRP P T+ S N ++ +W+ ++ +E ++ VV+I D++G+
Sbjct: 276 FGCNLVRPRP-FTEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGV 327
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 282 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 334
+ VRP P T+ S N ++ +W+ ++ +E ++ VV+I D++G+
Sbjct: 276 FGCNLVRPRP-FTEVSALYGNKMSSVWSGGLAYMYFEEENEYGVVKINDNDGV 327
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 260 LEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWNEHFEF 314
L V+++ + L NK+ DP ++ + + T +T NN NP W+ FEF
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 315 --IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
V D + +V YD ++ IG + + L+ G
Sbjct: 559 EVTVPDLALVRFMVEDYDSSS--KNDFIGQSTIPWNSLKQG 597
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 260 LEVKLVQAKGL--TNKDLIGKSDPYAVLFVRPLPEKTKKSKT---INNDLNPIWNEHFEF 314
L V+++ + L NK+ DP ++ + + T +T NN NP W+ FEF
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 315 --IVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPG 353
V D + +V YD ++ IG + + L+ G
Sbjct: 557 EVTVPDLALVRFMVEDYDSSS--KNDFIGQSTIPWNSLKQG 595
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 131 GGSGVTMELEMQWDANSSIILAIKTRLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFA 189
GG G+ +E + +D S+ LA++ R G VA V+N + G+ RL P PG +
Sbjct: 165 GGRGLILEGFVPFDREVSL-LAVRGRTGEVAFYPLVENRHWGGILRLSLAPA----PGAS 219
Query: 190 ------AVSYSLREKKKLDF 203
A +Y+LR + LD+
Sbjct: 220 EALQKKAEAYALRAMEALDY 239
>pdb|3UAJ|H Chain H, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|C Chain C, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|H Chain H, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|I Chain I, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 236
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 15/146 (10%)
Query: 52 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFS 111
++FY SW+ S + L W+ + ++ Y N + + SV+ Q LS++ +
Sbjct: 30 SDFYWSWLRQSPGKGLEWIGYAHSRVSAYYNPSLKSRVTISVDTSKNQIS-LRLSAVTAA 88
Query: 112 KFTLGTVAPQFTGVSIIEDGGSGVTMELEMQWDANSSIILAIKTRLGVAL----PVQVKN 167
L A Q TG +GV+ + W + +I+++ + G ++ P
Sbjct: 89 DTALYYCARQGTGT-------TGVSEDSFDLWGQGTKVIVSLASTKGPSVFPLAPSSKST 141
Query: 168 IGFTGVFRLIFRPLVDEFPGFAAVSY 193
G T + + D FP VS+
Sbjct: 142 SGGTAALGCLVK---DYFPEPVTVSW 164
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 288 RPLPEKTKKSKTINNDLNPIWNEHFEFIVE----DESTQHLVVRIYDDE---GIQSSELI 340
+P T+ S+ ++N L P++NE F ++ E Q+++V + + + +S I
Sbjct: 203 KPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVFSALWNSNSI 262
Query: 341 GCAQVRLCE 349
C Q+ E
Sbjct: 263 ACVQITFKE 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,061,086
Number of Sequences: 62578
Number of extensions: 665146
Number of successful extensions: 1644
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1521
Number of HSP's gapped (non-prelim): 106
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)