Query 008334
Match_columns 569
No_of_seqs 442 out of 3043
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 1.4E-60 3E-65 510.3 38.6 499 2-565 159-696 (1227)
2 KOG1028 Ca2+-dependent phospho 100.0 5.1E-30 1.1E-34 264.5 24.0 224 253-533 162-393 (421)
3 KOG2059 Ras GTPase-activating 99.9 4.5E-23 9.9E-28 211.5 15.3 250 258-568 5-283 (800)
4 cd04016 C2_Tollip C2 domain pr 99.9 8.1E-22 1.8E-26 168.1 14.3 119 257-384 1-121 (121)
5 COG5038 Ca2+-dependent lipid-b 99.9 6.6E-20 1.4E-24 198.6 29.0 345 215-564 655-1164(1227)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 1.6E-20 3.5E-25 163.3 13.6 119 260-383 1-126 (126)
7 cd04016 C2_Tollip C2 domain pr 99.8 3.5E-20 7.6E-25 158.1 14.4 113 444-560 2-121 (121)
8 cd08681 C2_fungal_Inn1p-like C 99.8 3.3E-20 7.3E-25 159.5 12.6 117 258-384 1-118 (118)
9 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.1E-19 2.5E-24 156.8 15.3 120 260-386 2-121 (121)
10 cd08395 C2C_Munc13 C2 domain t 99.8 1.3E-19 2.9E-24 154.1 13.8 108 259-367 1-115 (120)
11 cd08379 C2D_MCTP_PRT_plant C2 99.8 2E-19 4.3E-24 154.4 14.0 115 260-380 2-125 (126)
12 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.8E-19 3.9E-24 155.8 13.8 115 444-560 1-121 (121)
13 cd08375 C2_Intersectin C2 doma 99.8 3.3E-19 7.1E-24 156.4 15.4 119 255-384 12-135 (136)
14 cd04036 C2_cPLA2 C2 domain pre 99.8 2.8E-19 6E-24 153.9 14.6 116 260-384 2-117 (119)
15 cd08677 C2A_Synaptotagmin-13 C 99.8 9.6E-20 2.1E-24 152.6 10.9 108 252-362 8-118 (118)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.8E-19 4E-24 156.7 13.0 112 446-559 1-126 (126)
17 cd08376 C2B_MCTP_PRT C2 domain 99.8 4E-19 8.8E-24 152.3 14.8 115 259-385 1-115 (116)
18 cd08681 C2_fungal_Inn1p-like C 99.8 1.8E-19 3.9E-24 155.0 12.4 115 444-560 1-118 (118)
19 cd04019 C2C_MCTP_PRT_plant C2 99.8 4E-19 8.6E-24 158.2 14.4 125 259-386 1-133 (150)
20 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.9E-19 6.3E-24 155.6 13.2 121 259-385 1-126 (127)
21 cd08375 C2_Intersectin C2 doma 99.8 7.8E-19 1.7E-23 154.0 15.6 117 442-560 13-135 (136)
22 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.4E-19 1.2E-23 151.8 14.2 109 445-556 1-125 (126)
23 cd04024 C2A_Synaptotagmin-like 99.8 5E-19 1.1E-23 154.6 13.9 123 258-384 1-128 (128)
24 cd04036 C2_cPLA2 C2 domain pre 99.8 6.8E-19 1.5E-23 151.5 14.5 115 446-560 2-117 (119)
25 cd08376 C2B_MCTP_PRT C2 domain 99.8 9.5E-19 2E-23 150.0 15.3 114 445-561 1-115 (116)
26 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.3E-18 2.9E-23 150.1 15.0 116 445-562 1-121 (121)
27 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.4E-18 3E-23 149.5 14.8 119 260-384 2-121 (121)
28 cd08678 C2_C21orf25-like C2 do 99.8 1.9E-18 4.2E-23 150.1 15.8 122 260-387 1-122 (126)
29 cd08381 C2B_PI3K_class_II C2 d 99.8 5.2E-19 1.1E-23 152.3 12.0 105 257-362 12-121 (122)
30 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1E-18 2.2E-23 151.4 13.9 121 259-382 1-122 (123)
31 cd08381 C2B_PI3K_class_II C2 d 99.8 1.1E-18 2.5E-23 150.2 14.1 102 444-546 13-121 (122)
32 cd08677 C2A_Synaptotagmin-13 C 99.8 7.7E-19 1.7E-23 147.2 12.5 102 442-546 12-118 (118)
33 cd04028 C2B_RIM1alpha C2 domai 99.8 1.8E-18 3.9E-23 152.0 15.5 105 444-549 29-139 (146)
34 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.1E-18 2.3E-23 155.5 13.9 119 445-565 1-136 (150)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 1.4E-18 2.9E-23 152.8 14.2 109 257-366 28-140 (146)
36 cd04024 C2A_Synaptotagmin-like 99.8 1.2E-18 2.5E-23 152.3 13.8 115 444-560 1-128 (128)
37 KOG1030 Predicted Ca2+-depende 99.8 4.4E-19 9.5E-24 153.9 10.7 96 256-355 4-99 (168)
38 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.5E-18 5.4E-23 149.2 15.5 122 257-386 3-124 (126)
39 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.3E-18 2.8E-23 150.4 13.4 115 258-384 1-121 (121)
40 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.2E-18 4.9E-23 149.2 13.9 105 443-547 14-125 (125)
41 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.1E-18 2.4E-23 151.2 11.9 110 254-363 11-125 (125)
42 cd04044 C2A_Tricalbin-like C2 99.8 2.4E-18 5.3E-23 149.4 13.4 122 257-386 1-124 (124)
43 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.4E-18 5.3E-23 147.9 13.1 113 260-384 2-119 (121)
44 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.9E-18 4E-23 150.0 12.3 110 254-363 12-123 (124)
45 cd04029 C2A_SLP-4_5 C2 domain 99.8 2E-18 4.4E-23 149.3 12.5 109 254-362 11-124 (125)
46 cd08387 C2A_Synaptotagmin-8 C2 99.8 3.5E-18 7.5E-23 148.3 13.8 105 443-547 15-123 (124)
47 cd08678 C2_C21orf25-like C2 do 99.8 4.5E-18 9.8E-23 147.8 14.5 116 446-564 1-123 (126)
48 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.5E-18 5.4E-23 149.8 12.8 115 445-561 1-126 (127)
49 cd04029 C2A_SLP-4_5 C2 domain 99.8 4.3E-18 9.4E-23 147.3 14.1 105 443-547 14-125 (125)
50 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.1E-18 6.8E-23 147.3 12.7 110 445-560 1-119 (121)
51 cd04015 C2_plant_PLD C2 domain 99.8 6.6E-18 1.4E-22 152.0 15.1 123 257-385 6-158 (158)
52 cd08392 C2A_SLP-3 C2 domain fi 99.8 7.7E-18 1.7E-22 146.0 14.2 105 443-547 14-128 (128)
53 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 8.6E-18 1.9E-22 147.8 14.7 122 259-384 1-132 (133)
54 cd04015 C2_plant_PLD C2 domain 99.8 8.8E-18 1.9E-22 151.2 14.9 118 442-561 5-158 (158)
55 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.3E-17 2.8E-22 143.7 15.1 118 258-384 1-118 (119)
56 cd04050 C2B_Synaptotagmin-like 99.8 6.6E-18 1.4E-22 141.8 12.5 102 445-550 1-104 (105)
57 cd08385 C2A_Synaptotagmin-1-5- 99.8 6.1E-18 1.3E-22 146.8 12.4 109 255-363 13-123 (124)
58 cd04046 C2_Calpain C2 domain p 99.8 1.8E-17 3.9E-22 143.9 15.3 123 256-386 1-123 (126)
59 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.9E-17 4.2E-22 143.6 15.2 115 444-563 4-125 (126)
60 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.2E-17 2.5E-22 143.7 13.7 113 446-560 2-121 (121)
61 cd08680 C2_Kibra C2 domain fou 99.8 4.7E-18 1E-22 145.9 11.1 110 253-362 9-124 (124)
62 cd04041 C2A_fungal C2 domain f 99.8 3.6E-18 7.8E-23 144.9 10.3 102 258-362 1-106 (111)
63 cd04010 C2B_RasA3 C2 domain se 99.8 7E-18 1.5E-22 149.3 12.2 106 259-366 1-124 (148)
64 cd08388 C2A_Synaptotagmin-4-11 99.8 1.2E-17 2.5E-22 145.2 13.2 110 254-363 12-127 (128)
65 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.2E-17 4.7E-22 143.3 14.7 105 443-547 15-123 (124)
66 cd08395 C2C_Munc13 C2 domain t 99.8 1.2E-17 2.5E-22 142.2 12.5 104 445-549 1-113 (120)
67 cd08685 C2_RGS-like C2 domain 99.8 1.4E-17 3E-22 142.6 12.9 103 443-546 11-119 (119)
68 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.2E-17 2.5E-22 144.9 12.3 109 254-362 11-127 (128)
69 cd04017 C2D_Ferlin C2 domain f 99.7 3.3E-17 7.2E-22 144.1 15.1 119 259-386 2-133 (135)
70 cd08685 C2_RGS-like C2 domain 99.7 1.1E-17 2.3E-22 143.3 11.2 106 256-362 10-119 (119)
71 cd04050 C2B_Synaptotagmin-like 99.7 1.5E-17 3.2E-22 139.6 11.9 99 259-363 1-101 (105)
72 cd08389 C2A_Synaptotagmin-14_1 99.7 1.4E-17 3E-22 144.0 11.9 110 253-363 11-123 (124)
73 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 3E-17 6.5E-22 141.5 13.9 118 260-383 2-120 (121)
74 cd04014 C2_PKC_epsilon C2 doma 99.7 3.7E-17 8.1E-22 143.4 14.6 115 257-385 3-129 (132)
75 cd08680 C2_Kibra C2 domain fou 99.7 2E-17 4.3E-22 142.1 12.5 105 442-546 12-124 (124)
76 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.9E-17 6.3E-22 142.2 13.6 112 445-558 1-122 (123)
77 cd04030 C2C_KIAA1228 C2 domain 99.7 5.2E-17 1.1E-21 141.6 15.1 105 443-547 15-127 (127)
78 cd04031 C2A_RIM1alpha C2 domai 99.7 3.7E-17 8.1E-22 142.1 14.0 104 443-547 15-125 (125)
79 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.5E-17 5.3E-22 143.2 12.9 110 254-363 12-124 (125)
80 cd08382 C2_Smurf-like C2 domai 99.7 3.8E-17 8.1E-22 141.3 13.7 118 260-382 2-122 (123)
81 cd08373 C2A_Ferlin C2 domain f 99.7 6.6E-17 1.4E-21 140.8 15.2 116 264-388 2-119 (127)
82 cd04014 C2_PKC_epsilon C2 doma 99.7 6.3E-17 1.4E-21 141.9 15.2 116 443-563 3-131 (132)
83 cd04043 C2_Munc13_fungal C2 do 99.7 6.1E-17 1.3E-21 140.9 14.4 117 259-385 2-121 (126)
84 cd08388 C2A_Synaptotagmin-4-11 99.7 9.8E-17 2.1E-21 139.4 15.4 105 443-547 15-127 (128)
85 cd04039 C2_PSD C2 domain prese 99.7 2.5E-17 5.5E-22 138.3 11.1 94 258-354 1-99 (108)
86 cd04030 C2C_KIAA1228 C2 domain 99.7 4.5E-17 9.8E-22 142.0 12.7 109 254-362 12-126 (127)
87 cd04046 C2_Calpain C2 domain p 99.7 1.4E-16 3E-21 138.3 15.6 117 444-565 3-126 (126)
88 cd08390 C2A_Synaptotagmin-15-1 99.7 5.9E-17 1.3E-21 140.4 13.1 110 254-363 10-122 (123)
89 cd08521 C2A_SLP C2 domain firs 99.7 3.5E-17 7.6E-22 141.8 11.5 108 255-362 11-123 (123)
90 cd08521 C2A_SLP C2 domain firs 99.7 7.9E-17 1.7E-21 139.6 13.4 105 442-546 12-123 (123)
91 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 9E-17 2E-21 145.2 14.3 108 442-549 25-139 (162)
92 cd04044 C2A_Tricalbin-like C2 99.7 8.9E-17 1.9E-21 139.5 13.5 118 444-562 2-124 (124)
93 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 9.2E-17 2E-21 138.4 13.3 112 446-559 2-120 (121)
94 cd04052 C2B_Tricalbin-like C2 99.7 5.1E-17 1.1E-21 137.7 11.3 102 461-563 9-111 (111)
95 KOG1030 Predicted Ca2+-depende 99.7 2.9E-17 6.3E-22 142.7 9.6 93 442-537 4-97 (168)
96 cd08389 C2A_Synaptotagmin-14_1 99.7 1.4E-16 3.1E-21 137.7 13.7 105 443-548 15-124 (124)
97 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.4E-16 3E-21 140.1 13.9 116 445-561 1-133 (133)
98 cd04031 C2A_RIM1alpha C2 domai 99.7 6.8E-17 1.5E-21 140.5 11.7 107 255-362 13-124 (125)
99 cd08688 C2_KIAA0528-like C2 do 99.7 5.5E-17 1.2E-21 137.4 10.7 101 260-363 1-108 (110)
100 cd04027 C2B_Munc13 C2 domain s 99.7 1.5E-16 3.3E-21 138.3 13.8 115 259-382 2-127 (127)
101 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.6E-16 5.6E-21 135.5 15.0 112 444-560 1-118 (119)
102 cd04043 C2_Munc13_fungal C2 do 99.7 2.7E-16 5.9E-21 136.8 15.1 116 445-562 2-122 (126)
103 cd08676 C2A_Munc13-like C2 dom 99.7 8.3E-17 1.8E-21 142.9 12.0 103 255-362 25-153 (153)
104 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.7E-16 3.8E-21 137.9 13.7 105 443-547 15-124 (125)
105 cd04010 C2B_RasA3 C2 domain se 99.7 9.6E-17 2.1E-21 142.1 11.9 102 445-548 1-122 (148)
106 cd04017 C2D_Ferlin C2 domain f 99.7 2.9E-16 6.3E-21 138.1 14.5 118 445-564 2-135 (135)
107 cd08394 C2A_Munc13 C2 domain f 99.7 1.5E-16 3.3E-21 134.6 12.0 100 258-366 2-103 (127)
108 cd04051 C2_SRC2_like C2 domain 99.7 1.1E-16 2.4E-21 139.1 11.4 115 259-380 1-125 (125)
109 cd08390 C2A_Synaptotagmin-15-1 99.7 3.9E-16 8.4E-21 135.3 14.7 106 443-548 13-123 (123)
110 cd08407 C2B_Synaptotagmin-13 C 99.7 8E-17 1.7E-21 140.7 10.4 91 443-533 14-112 (138)
111 cd08394 C2A_Munc13 C2 domain f 99.7 1.7E-16 3.8E-21 134.2 12.1 98 444-548 2-101 (127)
112 cd08406 C2B_Synaptotagmin-12 C 99.7 6.8E-17 1.5E-21 141.2 9.9 103 443-547 14-122 (136)
113 cd04040 C2D_Tricalbin-like C2 99.7 3.3E-16 7E-21 134.0 13.9 113 260-379 1-113 (115)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.7E-16 3.7E-21 143.4 11.8 109 255-363 24-137 (162)
115 cd08373 C2A_Ferlin C2 domain f 99.7 7.5E-16 1.6E-20 134.2 14.7 111 450-564 2-119 (127)
116 cd08690 C2_Freud-1 C2 domain f 99.7 9E-16 2E-20 135.9 15.3 120 261-385 5-137 (155)
117 cd08382 C2_Smurf-like C2 domai 99.7 4.2E-16 9E-21 134.8 12.9 110 446-558 2-122 (123)
118 cd08406 C2B_Synaptotagmin-12 C 99.7 3.2E-16 6.9E-21 137.0 12.2 109 253-363 10-122 (136)
119 cd04049 C2_putative_Elicitor-r 99.7 2.7E-16 5.9E-21 136.3 11.5 104 258-364 1-108 (124)
120 cd04032 C2_Perforin C2 domain 99.7 3E-16 6.4E-21 135.0 11.6 94 255-352 25-119 (127)
121 cd04026 C2_PKC_alpha_gamma C2 99.7 6.4E-16 1.4E-20 135.4 13.3 110 444-554 13-127 (131)
122 cd04041 C2A_fungal C2 domain f 99.7 2.4E-16 5.2E-21 133.7 10.2 102 444-548 1-108 (111)
123 cd08675 C2B_RasGAP C2 domain s 99.7 3.8E-16 8.3E-21 137.2 11.7 105 260-365 1-121 (137)
124 cd04027 C2B_Munc13 C2 domain s 99.7 8.1E-16 1.8E-20 133.7 13.4 109 445-558 2-127 (127)
125 cd08688 C2_KIAA0528-like C2 do 99.7 3.9E-16 8.5E-21 132.1 11.1 101 446-548 1-109 (110)
126 cd08407 C2B_Synaptotagmin-13 C 99.7 1.2E-16 2.7E-21 139.4 8.2 110 252-363 9-124 (138)
127 cd04045 C2C_Tricalbin-like C2 99.7 4.1E-16 9E-21 133.9 11.3 103 258-364 1-103 (120)
128 cd04038 C2_ArfGAP C2 domain pr 99.7 5.1E-16 1.1E-20 137.1 12.0 93 257-354 1-93 (145)
129 cd08691 C2_NEDL1-like C2 domai 99.7 2.2E-15 4.8E-20 131.5 15.9 118 259-382 2-136 (137)
130 cd08676 C2A_Munc13-like C2 dom 99.7 4.1E-16 8.9E-21 138.4 11.3 102 441-546 25-153 (153)
131 cd08692 C2B_Tac2-N C2 domain s 99.7 5.2E-16 1.1E-20 133.4 11.0 104 442-546 12-121 (135)
132 PLN03008 Phospholipase D delta 99.7 8.9E-16 1.9E-20 164.7 15.3 129 257-391 13-183 (868)
133 cd04011 C2B_Ferlin C2 domain s 99.7 8.2E-16 1.8E-20 130.5 11.8 98 259-363 5-109 (111)
134 cd04018 C2C_Ferlin C2 domain t 99.7 6.3E-16 1.4E-20 137.1 11.5 102 259-363 1-124 (151)
135 cd04039 C2_PSD C2 domain prese 99.7 8.3E-16 1.8E-20 129.1 11.3 93 444-538 1-99 (108)
136 cd04018 C2C_Ferlin C2 domain t 99.7 8.6E-16 1.9E-20 136.2 11.7 107 446-554 2-131 (151)
137 cd08384 C2B_Rabphilin_Doc2 C2 99.7 3E-16 6.4E-21 137.9 8.7 110 253-364 8-121 (133)
138 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.4E-16 1.4E-20 136.2 10.3 105 443-549 14-124 (136)
139 cd08690 C2_Freud-1 C2 domain f 99.6 3.7E-15 8E-20 132.0 15.0 116 447-562 5-138 (155)
140 cd04049 C2_putative_Elicitor-r 99.6 2.3E-15 5E-20 130.5 13.2 106 444-551 1-111 (124)
141 cd08404 C2B_Synaptotagmin-4 C2 99.6 5.1E-16 1.1E-20 136.8 8.8 107 255-363 12-122 (136)
142 cd08408 C2B_Synaptotagmin-14_1 99.6 2.3E-15 5.1E-20 132.2 12.8 110 253-363 10-124 (138)
143 cd04009 C2B_Munc13-like C2 dom 99.6 2E-15 4.4E-20 132.4 11.8 98 255-352 13-118 (133)
144 cd08405 C2B_Synaptotagmin-7 C2 99.6 7.4E-16 1.6E-20 135.9 9.1 104 443-548 14-123 (136)
145 cd08409 C2B_Synaptotagmin-15 C 99.6 8.5E-16 1.8E-20 135.2 9.4 104 443-547 14-123 (137)
146 cd04052 C2B_Tricalbin-like C2 99.6 1.7E-15 3.7E-20 128.4 11.0 101 275-386 9-110 (111)
147 cd04009 C2B_Munc13-like C2 dom 99.6 3.9E-15 8.4E-20 130.6 13.5 95 443-537 15-119 (133)
148 KOG1013 Synaptic vesicle prote 99.6 1.1E-16 2.3E-21 151.9 3.7 229 249-532 84-327 (362)
149 cd08692 C2B_Tac2-N C2 domain s 99.6 1.1E-15 2.4E-20 131.3 9.6 112 251-363 7-122 (135)
150 cd08402 C2B_Synaptotagmin-1 C2 99.6 9.7E-16 2.1E-20 135.1 9.4 106 442-549 13-124 (136)
151 cd04037 C2E_Ferlin C2 domain f 99.6 1.3E-15 2.8E-20 131.7 9.9 93 259-352 1-93 (124)
152 cd08402 C2B_Synaptotagmin-1 C2 99.6 4E-15 8.6E-20 131.2 12.9 109 253-363 10-122 (136)
153 cd04038 C2_ArfGAP C2 domain pr 99.6 6E-15 1.3E-19 130.3 13.9 90 444-537 2-92 (145)
154 cd08403 C2B_Synaptotagmin-3-5- 99.6 6.3E-16 1.4E-20 135.9 7.6 109 253-363 9-121 (134)
155 cd04045 C2C_Tricalbin-like C2 99.6 5.3E-15 1.1E-19 127.0 12.9 108 444-554 1-109 (120)
156 cd08405 C2B_Synaptotagmin-7 C2 99.6 2.7E-15 5.8E-20 132.3 11.4 109 253-363 10-122 (136)
157 cd08410 C2B_Synaptotagmin-17 C 99.6 6.4E-15 1.4E-19 129.4 13.7 105 443-548 13-123 (135)
158 cd04021 C2_E3_ubiquitin_ligase 99.6 8.6E-15 1.9E-19 126.8 14.3 117 259-382 3-124 (125)
159 cd00276 C2B_Synaptotagmin C2 d 99.6 1.5E-15 3.3E-20 133.7 9.6 108 443-552 13-126 (134)
160 cd04040 C2D_Tricalbin-like C2 99.6 6.6E-15 1.4E-19 125.9 13.1 103 446-549 1-104 (115)
161 cd04051 C2_SRC2_like C2 domain 99.6 3.2E-15 6.9E-20 129.8 11.2 110 446-556 2-125 (125)
162 cd04011 C2B_Ferlin C2 domain s 99.6 4.7E-15 1E-19 125.8 11.7 100 443-548 3-110 (111)
163 cd04013 C2_SynGAP_like C2 doma 99.6 1.1E-14 2.4E-19 127.7 14.2 124 255-386 8-140 (146)
164 PLN03200 cellulose synthase-in 99.6 1.7E-15 3.6E-20 177.2 11.5 118 442-562 1978-2101(2102)
165 cd08384 C2B_Rabphilin_Doc2 C2 99.6 2.2E-15 4.8E-20 132.4 9.4 106 442-549 11-122 (133)
166 cd08410 C2B_Synaptotagmin-17 C 99.6 6.6E-15 1.4E-19 129.4 12.4 111 253-364 9-123 (135)
167 cd04013 C2_SynGAP_like C2 doma 99.6 1.2E-14 2.7E-19 127.3 13.6 117 442-565 9-143 (146)
168 cd04048 C2A_Copine C2 domain f 99.6 6.4E-15 1.4E-19 126.9 11.7 100 264-363 6-113 (120)
169 PLN03008 Phospholipase D delta 99.6 7.3E-15 1.6E-19 157.8 14.3 124 441-566 11-182 (868)
170 cd08675 C2B_RasGAP C2 domain s 99.6 5.7E-15 1.2E-19 129.8 11.2 103 446-549 1-121 (137)
171 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.7E-14 3.7E-19 124.9 13.9 101 443-543 14-120 (123)
172 cd04026 C2_PKC_alpha_gamma C2 99.6 7.9E-15 1.7E-19 128.5 11.9 106 258-364 13-121 (131)
173 cd08409 C2B_Synaptotagmin-15 C 99.6 2.4E-15 5.2E-20 132.4 8.6 109 254-363 11-123 (137)
174 cd04037 C2E_Ferlin C2 domain f 99.6 4.1E-15 8.9E-20 128.6 9.7 118 445-563 1-121 (124)
175 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.1E-14 2.4E-19 126.0 12.5 106 255-361 12-122 (123)
176 cd08403 C2B_Synaptotagmin-3-5- 99.6 4.1E-15 8.9E-20 130.7 9.8 103 443-547 13-121 (134)
177 KOG0696 Serine/threonine prote 99.6 1E-15 2.3E-20 149.5 6.1 109 443-552 179-292 (683)
178 cd08691 C2_NEDL1-like C2 domai 99.6 2.7E-14 5.9E-19 124.7 14.3 111 445-558 2-136 (137)
179 cd08383 C2A_RasGAP C2 domain ( 99.6 2.2E-14 4.8E-19 123.0 13.4 114 260-384 2-117 (117)
180 KOG0696 Serine/threonine prote 99.6 7E-16 1.5E-20 150.7 4.2 109 256-365 178-289 (683)
181 cd08383 C2A_RasGAP C2 domain ( 99.6 2.6E-14 5.7E-19 122.6 13.0 108 446-560 2-117 (117)
182 cd08686 C2_ABR C2 domain in th 99.6 1.3E-14 2.8E-19 121.2 10.6 82 260-348 1-91 (118)
183 cd08408 C2B_Synaptotagmin-14_1 99.6 2.2E-14 4.7E-19 126.1 12.5 105 442-547 13-124 (138)
184 cd04032 C2_Perforin C2 domain 99.6 1.4E-14 3E-19 124.6 11.0 92 442-536 26-119 (127)
185 cd00275 C2_PLC_like C2 domain 99.6 8E-14 1.7E-18 121.6 15.9 119 259-384 3-127 (128)
186 cd00276 C2B_Synaptotagmin C2 d 99.6 3.6E-15 7.9E-20 131.3 6.7 108 255-364 11-122 (134)
187 cd04048 C2A_Copine C2 domain f 99.6 4.3E-14 9.3E-19 121.7 12.0 99 449-547 5-113 (120)
188 KOG1028 Ca2+-dependent phospho 99.5 8.3E-14 1.8E-18 144.4 15.6 122 442-563 165-296 (421)
189 cd04021 C2_E3_ubiquitin_ligase 99.5 1E-13 2.2E-18 120.1 13.6 111 444-558 2-124 (125)
190 cd00275 C2_PLC_like C2 domain 99.5 1.8E-13 3.9E-18 119.4 14.3 114 444-560 2-127 (128)
191 PLN03200 cellulose synthase-in 99.5 4.1E-14 8.9E-19 165.8 12.0 121 255-386 1977-2101(2102)
192 cd04047 C2B_Copine C2 domain s 99.5 1.2E-13 2.7E-18 116.9 11.2 91 263-354 5-102 (110)
193 cd08686 C2_ABR C2 domain in th 99.5 5.2E-13 1.1E-17 111.6 12.8 105 446-560 1-118 (118)
194 PF00168 C2: C2 domain; Inter 99.5 4.1E-13 8.9E-18 107.8 9.7 85 260-344 1-85 (85)
195 cd04047 C2B_Copine C2 domain s 99.4 1.5E-12 3.2E-17 110.3 10.9 89 448-537 4-101 (110)
196 KOG1011 Neurotransmitter relea 99.4 7.1E-13 1.5E-17 135.1 8.1 113 441-558 292-421 (1283)
197 PF00168 C2: C2 domain; Inter 99.4 6.5E-12 1.4E-16 100.7 10.7 83 446-528 1-85 (85)
198 KOG1011 Neurotransmitter relea 99.4 2E-12 4.2E-17 132.0 9.0 121 256-385 293-424 (1283)
199 KOG1326 Membrane-associated pr 99.3 1.7E-12 3.6E-17 139.1 6.4 91 258-349 613-703 (1105)
200 cd08374 C2F_Ferlin C2 domain s 99.3 1.7E-11 3.7E-16 105.5 10.3 95 260-354 2-125 (133)
201 smart00239 C2 Protein kinase C 99.3 4.1E-11 8.8E-16 99.1 11.5 96 260-355 2-97 (101)
202 cd00030 C2 C2 domain. The C2 d 99.3 3.7E-11 8E-16 99.1 11.0 101 260-362 1-102 (102)
203 cd08374 C2F_Ferlin C2 domain s 99.3 2.9E-11 6.2E-16 104.1 9.8 93 446-538 2-125 (133)
204 KOG1326 Membrane-associated pr 99.2 4E-12 8.7E-17 136.3 4.6 92 442-533 611-703 (1105)
205 PLN02270 phospholipase D alpha 99.2 1.1E-10 2.5E-15 125.9 13.9 122 442-565 6-152 (808)
206 PLN02270 phospholipase D alpha 99.2 1.8E-10 3.9E-15 124.4 14.3 128 257-390 7-153 (808)
207 cd00030 C2 C2 domain. The C2 d 99.2 1.9E-10 4.2E-15 94.7 10.8 100 446-546 1-102 (102)
208 KOG2059 Ras GTPase-activating 99.2 6E-11 1.3E-15 123.2 9.0 120 444-565 5-129 (800)
209 PLN02223 phosphoinositide phos 99.2 4.8E-10 1E-14 116.5 15.5 105 257-364 408-519 (537)
210 smart00239 C2 Protein kinase C 99.2 3E-10 6.4E-15 93.8 11.2 94 446-539 2-97 (101)
211 PF10296 DUF2404: Putative int 99.1 3.5E-10 7.5E-15 91.5 9.8 85 71-155 1-89 (91)
212 PLN02952 phosphoinositide phos 99.1 1.9E-09 4.1E-14 114.6 15.1 105 257-364 469-581 (599)
213 PLN02223 phosphoinositide phos 99.1 1.8E-09 3.9E-14 112.3 13.9 115 443-560 408-536 (537)
214 PLN02228 Phosphoinositide phos 99.0 6.3E-09 1.4E-13 110.0 13.9 122 443-567 430-567 (567)
215 PLN02230 phosphoinositide phos 99.0 8E-09 1.7E-13 109.7 14.5 105 257-364 468-580 (598)
216 KOG1327 Copine [Signal transdu 98.9 7.7E-09 1.7E-13 106.6 13.1 183 293-536 41-236 (529)
217 KOG1328 Synaptic vesicle prote 98.9 1.8E-10 4E-15 119.4 1.2 127 256-386 112-302 (1103)
218 PLN02222 phosphoinositide phos 98.9 2E-08 4.4E-13 106.5 15.3 105 257-364 451-563 (581)
219 PLN02952 phosphoinositide phos 98.9 1.5E-08 3.1E-13 107.9 14.0 115 443-560 469-598 (599)
220 PLN02228 Phosphoinositide phos 98.9 2.7E-08 5.8E-13 105.3 15.2 124 257-386 430-562 (567)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.3E-09 1.4E-13 83.9 7.4 86 446-537 1-89 (109)
222 PLN02230 phosphoinositide phos 98.9 2E-08 4.3E-13 106.7 12.6 115 443-560 468-597 (598)
223 KOG0169 Phosphoinositide-speci 98.9 1.8E-08 3.9E-13 106.9 12.1 121 259-385 617-744 (746)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.2E-08 2.6E-13 82.3 7.6 85 260-352 1-88 (109)
225 PLN02222 phosphoinositide phos 98.8 5.2E-08 1.1E-12 103.4 13.9 115 443-560 451-580 (581)
226 KOG0169 Phosphoinositide-speci 98.8 2.5E-08 5.4E-13 105.9 11.0 118 445-562 617-745 (746)
227 KOG1031 Predicted Ca2+-depende 98.8 3.1E-08 6.8E-13 100.6 10.0 124 258-389 3-140 (1169)
228 PLN02352 phospholipase D epsil 98.7 8.9E-08 1.9E-12 103.7 12.8 118 441-566 7-135 (758)
229 KOG1264 Phospholipase C [Lipid 98.7 5E-08 1.1E-12 102.9 9.1 116 444-563 1065-1191(1267)
230 PLN02352 phospholipase D epsil 98.7 1.6E-07 3.4E-12 101.8 12.7 122 256-390 8-135 (758)
231 KOG0905 Phosphoinositide 3-kin 98.7 2.8E-08 6.1E-13 108.5 6.4 108 442-549 1522-1636(1639)
232 KOG1328 Synaptic vesicle prote 98.6 9.2E-09 2E-13 107.1 2.1 95 257-351 946-1048(1103)
233 KOG1264 Phospholipase C [Lipid 98.6 1.5E-07 3.2E-12 99.4 10.6 124 258-388 1065-1192(1267)
234 KOG1031 Predicted Ca2+-depende 98.5 4E-07 8.6E-12 92.8 8.0 113 444-558 3-133 (1169)
235 cd08683 C2_C2cd3 C2 domain fou 98.4 3.3E-07 7.2E-12 76.2 4.3 101 446-546 1-143 (143)
236 KOG0905 Phosphoinositide 3-kin 98.3 5.1E-07 1.1E-11 99.1 4.2 107 257-363 1523-1634(1639)
237 KOG1327 Copine [Signal transdu 98.1 1.1E-05 2.3E-10 83.8 9.2 87 265-352 143-236 (529)
238 KOG3532 Predicted protein kina 98.0 2.6E-05 5.6E-10 81.4 9.7 227 54-289 81-358 (1051)
239 KOG1013 Synaptic vesicle prote 98.0 9.9E-06 2.1E-10 78.1 5.5 104 255-360 230-337 (362)
240 PLN02964 phosphatidylserine de 97.9 2.6E-05 5.5E-10 84.4 6.8 88 255-352 51-139 (644)
241 cd08684 C2A_Tac2-N C2 domain f 97.8 2.1E-05 4.5E-10 60.9 4.0 96 448-545 3-102 (103)
242 PF12416 DUF3668: Cep120 prote 97.8 0.0036 7.9E-08 62.8 20.2 256 260-537 2-296 (340)
243 cd08684 C2A_Tac2-N C2 domain f 97.8 2.5E-05 5.5E-10 60.4 3.4 97 261-360 2-101 (103)
244 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00023 5E-09 59.6 5.4 103 260-362 1-143 (143)
245 KOG2060 Rab3 effector RIM1 and 97.3 0.00022 4.8E-09 70.2 3.5 108 441-549 266-380 (405)
246 PLN02964 phosphatidylserine de 97.2 0.00057 1.2E-08 74.2 6.3 89 441-537 51-140 (644)
247 KOG2060 Rab3 effector RIM1 and 97.2 0.00029 6.4E-09 69.3 3.2 109 255-364 266-379 (405)
248 KOG3837 Uncharacterized conser 97.2 0.00041 8.8E-09 68.9 4.2 120 442-561 365-503 (523)
249 KOG3837 Uncharacterized conser 97.0 0.00048 1E-08 68.4 3.3 124 257-385 366-503 (523)
250 PF15627 CEP76-C2: CEP76 C2 do 96.8 0.02 4.3E-07 50.5 11.0 124 441-564 6-153 (156)
251 PF15627 CEP76-C2: CEP76 C2 do 96.6 0.037 8.1E-07 48.8 11.5 131 256-387 7-152 (156)
252 PF10358 NT-C2: N-terminal C2 96.6 0.1 2.3E-06 45.9 14.5 122 443-568 6-142 (143)
253 cd08693 C2_PI3K_class_I_beta_d 95.7 0.084 1.8E-06 48.1 9.6 89 444-534 8-120 (173)
254 cd08398 C2_PI3K_class_I_alpha 95.5 0.12 2.6E-06 46.3 9.5 87 444-534 8-106 (158)
255 PF10358 NT-C2: N-terminal C2 95.3 1.2 2.7E-05 39.0 15.6 121 258-388 7-138 (143)
256 PF12416 DUF3668: Cep120 prote 95.3 0.24 5.2E-06 50.0 12.1 112 446-562 2-133 (340)
257 KOG1265 Phospholipase C [Lipid 95.1 0.054 1.2E-06 59.3 7.2 91 256-354 701-798 (1189)
258 cd08398 C2_PI3K_class_I_alpha 94.8 0.95 2.1E-05 40.5 13.3 89 258-350 8-106 (158)
259 cd08687 C2_PKN-like C2 domain 94.5 0.4 8.6E-06 37.9 8.7 84 279-384 9-92 (98)
260 cd08380 C2_PI3K_like C2 domain 94.5 0.27 5.8E-06 44.1 9.2 90 444-534 8-107 (156)
261 cd08693 C2_PI3K_class_I_beta_d 94.0 0.44 9.5E-06 43.5 9.5 90 258-349 8-119 (173)
262 cd08397 C2_PI3K_class_III C2 d 93.8 0.29 6.3E-06 43.9 7.9 72 463-534 28-107 (159)
263 KOG1265 Phospholipase C [Lipid 93.7 0.14 3E-06 56.3 6.5 90 441-537 700-797 (1189)
264 cd04012 C2A_PI3K_class_II C2 d 93.5 0.32 7E-06 44.3 7.8 92 443-534 7-119 (171)
265 cd08380 C2_PI3K_like C2 domain 93.0 0.63 1.4E-05 41.7 8.8 92 258-350 8-107 (156)
266 cd08399 C2_PI3K_class_I_gamma 92.9 0.74 1.6E-05 42.0 9.1 89 444-533 10-121 (178)
267 PF00792 PI3K_C2: Phosphoinosi 92.9 1.1 2.4E-05 39.3 10.1 55 480-534 22-85 (142)
268 cd08687 C2_PKN-like C2 domain 92.7 1 2.3E-05 35.6 8.2 84 465-560 9-92 (98)
269 KOG1452 Predicted Rho GTPase-a 92.2 0.33 7.2E-06 47.1 6.0 118 255-385 48-167 (442)
270 cd08695 C2_Dock-B C2 domains f 92.0 2.1 4.4E-05 39.4 10.8 56 293-348 53-112 (189)
271 cd08397 C2_PI3K_class_III C2 d 91.5 0.67 1.5E-05 41.6 7.0 74 277-350 28-107 (159)
272 cd08694 C2_Dock-A C2 domains f 91.2 3 6.5E-05 38.5 10.9 56 293-348 53-114 (196)
273 cd04012 C2A_PI3K_class_II C2 d 90.9 0.84 1.8E-05 41.6 7.2 92 258-349 8-118 (171)
274 smart00142 PI3K_C2 Phosphoinos 88.9 3 6.6E-05 34.1 8.3 73 446-518 13-92 (100)
275 KOG1452 Predicted Rho GTPase-a 88.7 0.84 1.8E-05 44.4 5.4 114 441-560 48-166 (442)
276 PF15625 CC2D2AN-C2: CC2D2A N- 88.6 7.1 0.00015 35.4 11.3 96 466-563 38-163 (168)
277 PF14429 DOCK-C2: C2 domain in 88.0 2.4 5.1E-05 39.1 7.9 57 293-349 59-120 (184)
278 cd08399 C2_PI3K_class_I_gamma 86.7 4.8 0.0001 36.8 8.8 72 259-332 11-88 (178)
279 PF00792 PI3K_C2: Phosphoinosi 83.9 10 0.00022 33.2 9.5 55 296-350 23-85 (142)
280 PF15625 CC2D2AN-C2: CC2D2A N- 83.1 19 0.00042 32.5 11.2 69 279-351 37-107 (168)
281 cd08695 C2_Dock-B C2 domains f 82.5 14 0.00031 33.9 10.0 56 478-533 53-113 (189)
282 smart00142 PI3K_C2 Phosphoinos 81.3 8.1 0.00018 31.6 7.4 74 260-333 13-92 (100)
283 KOG1329 Phospholipase D1 [Lipi 79.9 4.1 8.9E-05 45.7 6.5 106 279-389 138-244 (887)
284 PF11618 DUF3250: Protein of u 79.2 12 0.00027 30.9 7.7 87 292-385 10-105 (107)
285 cd08697 C2_Dock-D C2 domains f 79.1 20 0.00044 32.9 9.8 40 293-332 56-97 (185)
286 cd08679 C2_DOCK180_related C2 78.9 6.1 0.00013 36.2 6.5 55 294-349 54-115 (178)
287 PF14429 DOCK-C2: C2 domain in 78.5 9.9 0.00021 35.0 7.9 56 478-533 59-120 (184)
288 cd08694 C2_Dock-A C2 domains f 78.3 26 0.00056 32.4 10.2 55 478-532 53-114 (196)
289 PTZ00447 apical membrane antig 77.5 22 0.00048 35.4 10.0 110 442-559 56-171 (508)
290 cd08696 C2_Dock-C C2 domains f 76.0 8.5 0.00018 35.2 6.4 56 293-348 54-117 (179)
291 PF11618 DUF3250: Protein of u 74.4 12 0.00025 31.1 6.3 82 478-560 11-104 (107)
292 KOG1329 Phospholipase D1 [Lipi 74.0 3.8 8.2E-05 45.9 4.3 101 465-567 138-246 (887)
293 PF15102 TMEM154: TMEM154 prot 65.1 9 0.0002 33.3 3.8 6 68-73 132-137 (146)
294 KOG2238 Uncharacterized conser 61.7 2.5 5.4E-05 46.5 -0.2 89 65-153 334-426 (795)
295 cd08679 C2_DOCK180_related C2 53.3 44 0.00095 30.5 6.6 53 480-533 55-115 (178)
296 cd08696 C2_Dock-C C2 domains f 52.4 45 0.00097 30.5 6.3 56 478-533 54-118 (179)
297 KOG0694 Serine/threonine prote 51.1 4.2 9E-05 44.3 -0.6 80 279-362 28-108 (694)
298 PF07162 B9-C2: Ciliary basal 46.6 2.2E+02 0.0048 25.6 10.8 80 263-348 7-102 (168)
299 cd08697 C2_Dock-D C2 domains f 41.1 86 0.0019 28.8 6.4 56 478-533 56-123 (185)
300 KOG4027 Uncharacterized conser 36.4 1.9E+02 0.0042 25.6 7.3 71 278-348 25-109 (187)
301 KOG4269 Rac GTPase-activating 34.6 18 0.0004 40.6 1.1 87 255-348 756-854 (1112)
302 KOG0694 Serine/threonine prote 33.1 13 0.00028 40.7 -0.3 92 464-560 27-120 (694)
303 KOG4092 Mitochondrial F1F0-ATP 29.8 34 0.00075 27.2 1.6 44 52-95 36-79 (108)
304 PF06219 DUF1005: Protein of u 28.0 4E+02 0.0087 27.8 9.1 63 322-386 95-168 (460)
305 PF10409 PTEN_C2: C2 domain of 26.6 4E+02 0.0087 22.6 9.6 90 444-535 4-98 (134)
306 PF06219 DUF1005: Protein of u 26.5 1.9E+02 0.0042 30.0 6.6 60 507-566 95-172 (460)
307 cd05137 RasGAP_CLA2_BUD2 CLA2/ 26.2 87 0.0019 32.6 4.3 43 339-385 1-44 (395)
308 PF08693 SKG6: Transmembrane a 25.8 63 0.0014 21.5 2.0 9 21-29 30-38 (40)
309 PF06024 DUF912: Nucleopolyhed 25.1 52 0.0011 26.9 2.0 14 16-29 78-91 (101)
310 KOG2419 Phosphatidylserine dec 21.7 22 0.00047 38.5 -1.1 57 258-318 280-340 (975)
311 PF14575 EphA2_TM: Ephrin type 21.3 77 0.0017 24.3 2.1 16 61-76 53-68 (75)
312 PTZ00447 apical membrane antig 21.3 8.7E+02 0.019 24.6 9.8 110 258-383 58-171 (508)
313 PF01102 Glycophorin_A: Glycop 20.0 41 0.00088 28.6 0.4 26 4-29 66-91 (122)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.4e-60 Score=510.29 Aligned_cols=499 Identities=24% Similarity=0.378 Sum_probs=404.0
Q ss_pred cchhhhHHHHHHHH-----------HHHHHhheeeeeeccchhHhhHhhccCHHhhhhccCCCCCCCceecCCCCchhHH
Q 008334 2 SLMMLFFYFVFLIL-----------LLLWLYYYYYYYYCMKATTIAAFARMTVEDSKKILPAEFYPSWVVFSHRQKLTWL 70 (569)
Q Consensus 2 ~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~~~E~~~Wl 70 (569)
++++++|.++|+++ +.+..+++|..+ +.++.+..+++..+.+....+- .|+|++|||
T Consensus 159 ~i~l~~~v~Swifg~~~fs~~slffii~~~~~vY~~~-------~~rv~rnird~v~~~~~~ek~~-----nd~ESveWL 226 (1227)
T COG5038 159 AIVLIGSVASWIFGYLGFSFASLFFIILVTMYVYRTC-------IKRVRRNIRDLVQQELSEEKLE-----NDYESVEWL 226 (1227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh-----cchhHHHHH
Confidence 46777888888777 122222222222 2334455566666666555453 789999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhhcCCCccceEEEEEEecCCCCCeEEEEEEEEc-CCCeEEEEEEEEEec----
Q 008334 71 NHHLEKLWPYVNEAASELIKSSVEPVLEQYRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDA---- 145 (569)
Q Consensus 71 N~~l~~~W~~~~~~~~~~~~~~~~~~l~~~~p~~i~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~~~~~~---- 145 (569)
|++|+++||.++|.+++.+.+++|+.|.+..|+||+++.+.+||||++||+|.+||.|+. +.|.+.||+++++..
T Consensus 227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~s 306 (1227)
T COG5038 227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDIS 306 (1227)
T ss_pred HHHHHhheeccChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchh
Confidence 999999999999999999999999999999999999999999999999999999999988 679999999999972
Q ss_pred -----------CceEEEEEEe--eec-eeeeEEEEEEEEEEEEEEEeecCCCCCCcceEEEEEecccceeeEEEEEcc--
Q 008334 146 -----------NSSIILAIKT--RLG-VALPVQVKNIGFTGVFRLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKVVG-- 209 (569)
Q Consensus 146 -----------~~~i~l~~~~--~~g-~~~~v~v~~~~~~g~~rv~l~pl~~~~P~~~~~~~~f~~~p~ldf~l~~~g-- 209 (569)
+++|.|.++. .+| +++||.|+++.|+|++|++++ |++++|++..+.++|++.|.+||.++++|
T Consensus 307 D~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~ 385 (1227)
T COG5038 307 DVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGGD 385 (1227)
T ss_pred hhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCCC
Confidence 3557777763 355 789999999999999999999 99999999999999999999999999997
Q ss_pred ---ccccCCcchhHHHHHHHHHHHhhhccccceEeeeCCCCCccccccCccEEEEEEEEEeeccccCC--CCCCCCcEEE
Q 008334 210 ---GDISTIPGLSDSIEATIHDAIEDSITWPVRKIVPILPGDYSELELKPVGTLEVKLVQAKGLTNKD--LIGKSDPYAV 284 (569)
Q Consensus 210 ---~~i~~iP~l~~~~~~~i~~~l~~~~~~P~~~~~~l~~~~~~~~~~~~~g~L~V~v~~a~~L~~~d--~~g~~dpyv~ 284 (569)
.||+.||||+.|++++|...+++|+++|+++.+++..-. ......+.|++.|+|.+|++|...+ ..+..|||+.
T Consensus 386 ~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m-~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit 464 (1227)
T COG5038 386 FFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIM-AGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT 464 (1227)
T ss_pred ccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhh-ccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence 368899999999999999999999999999999764211 1113478999999999999999888 6788999999
Q ss_pred EEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEE-EEEcc
Q 008334 285 LFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDV-WLKLV 363 (569)
Q Consensus 285 v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~-~~~L~ 363 (569)
+... +....||++.+++.||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|........ -+.+
T Consensus 465 ~~~~--~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~- 540 (1227)
T COG5038 465 VTFS--DRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEF- 540 (1227)
T ss_pred EEec--cccCCccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeee-
Confidence 9975 34556999999999999999999888754 66999999999988999999999999999876554332 3333
Q ss_pred ccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhhcCcccccCCCCCccccccchhhhccccccccc
Q 008334 364 KDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIR 443 (569)
Q Consensus 364 ~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (569)
.+..+..|+++.++.|+|.-..+....+ +.+ +.+....
T Consensus 541 -----~~~~k~vGrL~yDl~ffp~~e~k~~~~~----------------------s~e---------------~~ed~n~ 578 (1227)
T COG5038 541 -----LRNTKNVGRLTYDLRFFPVIEDKKELKG----------------------SVE---------------PLEDSNT 578 (1227)
T ss_pred -----eccCccceEEEEeeeeecccCCcccccc----------------------ccC---------------CcccCCc
Confidence 3467889999999999986443321110 000 0011346
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 523 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 523 (569)
|++.+++.++++|.... ......+++++++. ...+.|+.++.+.+|.||+++...+.+.....+.+.++|.. ..+.
T Consensus 579 GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~-keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g~~ 654 (1227)
T COG5038 579 GILKVTLREVKALDELS-SKKDNKSAELYTNA-KEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SGKV 654 (1227)
T ss_pred ceeEEEeeccccccCcc-ccccceeEEEEecc-eEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cCce
Confidence 99999999999997643 12233448888875 56788899999999999999999999888889999999876 3478
Q ss_pred eEEEEEecceeeec-ceEeEEEEcCCCCCeEEEEEEEEeecCC
Q 008334 524 MGRCILTLTRVILE-GEYTDCFELDGTKSGKLKLHLKWMPQPI 565 (569)
Q Consensus 524 lG~~~i~l~~l~~~-~~~~~w~~L~~~~~G~i~l~~~~~p~~~ 565 (569)
+|....+|.+++.. ....+||++. .+.|+|.+.--|+|.+.
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~ 696 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYN 696 (1227)
T ss_pred eccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeec
Confidence 88888888887655 4568999999 66899999999999864
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.1e-30 Score=264.53 Aligned_cols=224 Identities=34% Similarity=0.530 Sum_probs=193.4
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYD 330 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v~d 330 (569)
+......|.|+|++|++|+..|..|.+||||++++.|....+.+|++.++++||+|||+|.|.+.. .....|.+.|||
T Consensus 162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~ 241 (421)
T KOG1028|consen 162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD 241 (421)
T ss_pred ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence 335678899999999999999977789999999999888889999999999999999999999653 357799999999
Q ss_pred CCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHh
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVL 410 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 410 (569)
+|+++++++||++.++|..+........|.++...... .....|+|.++++|.|
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~--~~~~~gel~~sL~Y~p------------------------ 295 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD--SEELAGELLLSLCYLP------------------------ 295 (421)
T ss_pred cCCcccccEEEEEEecCccccccccceeeeccccccCC--cccccceEEEEEEeec------------------------
Confidence 99999999999999999988777667889999765322 1222389999999986
Q ss_pred hcCcccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCC
Q 008334 411 TNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVND 487 (569)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~ 487 (569)
..|.|+|.|++|++|...+..+.+||||++++-... .+++|.+.++
T Consensus 296 -------------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~ 344 (421)
T KOG1028|consen 296 -------------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK 344 (421)
T ss_pred -------------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC
Confidence 248999999999999999999999999999985432 4789999999
Q ss_pred CCCCeeceEEEEEec--cCCCCEEEEEEEECCCCCC-ceeEEEEEecce
Q 008334 488 CLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTR 533 (569)
Q Consensus 488 t~nP~w~e~f~f~v~--~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~ 533 (569)
+.||+|||+|.|.|. ...+..|.|+|||++..+. ++||++.+....
T Consensus 345 ~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 345 TLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999999999887 3345689999999999987 799999998775
No 3
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.90 E-value=4.5e-23 Score=211.52 Aligned_cols=250 Identities=21% Similarity=0.352 Sum_probs=200.7
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d 337 (569)
..|.|+|.+|+||++.+..|..||||.|.++ ...+.+|.++.+++.|.|.|+|+|.+... -+.|.|-|||.| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD--~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD--QEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec--chhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 4688999999999999999999999999997 46789999999999999999999999743 458999999999 8999
Q ss_pred cceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhhcCcccc
Q 008334 338 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKAL 417 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (569)
+.||.+.+.=++|......+.|+.|++ ...+....|++++++.+.+....
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~---VD~dsEVQG~v~l~l~~~e~~~~--------------------------- 130 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP---VDPDSEVQGKVHLELALTEAIQS--------------------------- 130 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc---cCCChhhceeEEEEEEeccccCC---------------------------
Confidence 999999999999987778899999964 24466789999999998642110
Q ss_pred cCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC--eeEeecccCCCCCCeece
Q 008334 418 KSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE--TRNKTRVVNDCLNPIWNQ 495 (569)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~--~~~~T~~~~~t~nP~w~e 495 (569)
.-+...+.+++++-+.. ++.+|||+++...+.. +..+|+++++|.+|.|+|
T Consensus 131 --------------------------~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~E 183 (800)
T KOG2059|consen 131 --------------------------SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDE 183 (800)
T ss_pred --------------------------CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhh
Confidence 11222334444554443 4569999999986532 346899999999999999
Q ss_pred EEEEEeccC---------------CCCEEEEEEEEC-CCCC-CceeEEEEEecceeeecceEeEEEEcCC----------
Q 008334 496 TFDFVVEDG---------------LHDMLIAEVWDH-DTFG-KDYMGRCILTLTRVILEGEYTDCFELDG---------- 548 (569)
Q Consensus 496 ~f~f~v~~~---------------~~~~l~i~V~d~-~~~~-~d~lG~~~i~l~~l~~~~~~~~w~~L~~---------- 548 (569)
.|.|.+... ....|.+++|+. +... ++|+|++.+++...........||-|..
T Consensus 184 v~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~ 263 (800)
T KOG2059|consen 184 VFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDG 263 (800)
T ss_pred heeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCC
Confidence 999998633 234688999984 4444 4699999999999876677799999953
Q ss_pred CCCeEEEEEEEEeecCCCCC
Q 008334 549 TKSGKLKLHLKWMPQPIYRD 568 (569)
Q Consensus 549 ~~~G~i~l~~~~~p~~~~~~ 568 (569)
..-|.+++.+.|...++|++
T Consensus 264 ~~lGslrl~v~y~~D~Vlps 283 (800)
T KOG2059|consen 264 GDLGSLRLNVTYTEDHVLPS 283 (800)
T ss_pred CCccceeeeEEeeeceeccH
Confidence 23589999999999999875
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=8.1e-22 Score=168.14 Aligned_cols=119 Identities=24% Similarity=0.454 Sum_probs=103.3
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCC-CCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~ 335 (569)
.|+|.|+|++|++++..+ .|++||||++.++ +++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg---~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVG---HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEEC---CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 7999999999997 67789999865 89999999999999754 458999999999999
Q ss_pred CCcceEEEEEEcc-ccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 336 SSELIGCAQVRLC-ELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 336 ~d~~iG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
+|++||++.+++. .+..+...+.|++|.+. .+....|+|+++++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~----~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK----QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc----cCCCCceEEEEEEeC
Confidence 9999999999996 57778778999999753 234577999999987
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.87 E-value=6.6e-20 Score=198.63 Aligned_cols=345 Identities=25% Similarity=0.374 Sum_probs=231.4
Q ss_pred CcchhHHHHHHHHHHHhhhccccce-------Eee---eCCC-C-Cccc-cccCccEEEEEEEEEeeccccCCCCCCCCc
Q 008334 215 IPGLSDSIEATIHDAIEDSITWPVR-------KIV---PILP-G-DYSE-LELKPVGTLEVKLVQAKGLTNKDLIGKSDP 281 (569)
Q Consensus 215 iP~l~~~~~~~i~~~l~~~~~~P~~-------~~~---~l~~-~-~~~~-~~~~~~g~L~V~v~~a~~L~~~d~~g~~dp 281 (569)
++....-+...+.......++.|.+ +.. |+.- + ..+. ....+.|.++|+|..|.+|.+....+++||
T Consensus 655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dP 734 (1227)
T COG5038 655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDP 734 (1227)
T ss_pred eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCccccc
Confidence 3444334456666666666666665 111 3321 1 1111 234789999999999999998888899999
Q ss_pred EEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCcee---EE
Q 008334 282 YAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVK---DV 358 (569)
Q Consensus 282 yv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~---~~ 358 (569)
|+++.+. +..+++|-....+.||.||+..+..+... .+.+.++++|+...+.|..+|++.++++++...... ..
T Consensus 735 ya~v~~n--~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 735 YATVLVN--NLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred ceEEEec--ceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence 9999997 36678998889999999999988888754 567999999999999999999999999988542111 11
Q ss_pred EEE---ccccccccCCCcceeEEEEEEEEEecCCCCCcC-------------------------CCCCCC--------CC
Q 008334 359 WLK---LVKDLDVQRDTKYRGQVHLELLYCPFGMENVFT-------------------------NPFAPN--------FS 402 (569)
Q Consensus 359 ~~~---L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~-------------------------~~~~~~--------~~ 402 (569)
.+. ...++. ..+.+..|++.+.+.|+|.....+.+ .+...+ .+
T Consensus 812 ~i~g~~~t~~l~-~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~ 890 (1227)
T COG5038 812 TIDGAEETGKLS-LTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIE 890 (1227)
T ss_pred eecCcccccccc-cccCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhccee
Confidence 110 011111 11456789999999999864332210 000000 00
Q ss_pred ---hhh---------HHHHhhcCc----------------------------------cccc-CCCCCcc----------
Q 008334 403 ---MTS---------LEKVLTNGE----------------------------------KALK-SGANGTE---------- 425 (569)
Q Consensus 403 ---~~~---------~~~~~~~~~----------------------------------~~~~-~~~~~~~---------- 425 (569)
+.+ +...++-.+ ++.. ....+..
T Consensus 891 v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~ 970 (1227)
T COG5038 891 VEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEY 970 (1227)
T ss_pred eccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhcc
Confidence 000 111111000 0000 0000000
Q ss_pred ------ccc----cc-------------------hh----------------------hhccccccccceEEEEEEEEeE
Q 008334 426 ------AIE----LE-------------------KD----------------------ASQKRREVIIRGVLSVTVILAE 454 (569)
Q Consensus 426 ------~~~----~~-------------------~~----------------------~~~~~~~~~~~~~L~v~v~~a~ 454 (569)
... .+ +. ..+.......+|.|.|.+.+|.
T Consensus 971 s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~ 1050 (1227)
T COG5038 971 SETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGE 1050 (1227)
T ss_pred ceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccC
Confidence 000 00 00 0000112245899999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ceeEEEEEecce
Q 008334 455 NLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTR 533 (569)
Q Consensus 455 ~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~ 533 (569)
||+..|.+|.+||||++.+++ +..++|+++++|+||+|||.++..|.+...+.+.|.|+|++...+ |.||.+.++|+.
T Consensus 1051 nl~~~d~ng~sDpfv~~~ln~-k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~ 1129 (1227)
T COG5038 1051 NLPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129 (1227)
T ss_pred CCcccccCCCCCceEEEEecc-eecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhh
Confidence 999999999999999999986 458999999999999999999999998788999999999998766 799999999999
Q ss_pred eeecceEeEEEEcCCCC----CeEEEEEEEEeecC
Q 008334 534 VILEGEYTDCFELDGTK----SGKLKLHLKWMPQP 564 (569)
Q Consensus 534 l~~~~~~~~w~~L~~~~----~G~i~l~~~~~p~~ 564 (569)
+..++......+|.+.. .|.++..+.+++.+
T Consensus 1130 l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038 1130 LEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred cCcCCccceeeeccCcceEecccEeecceecchhh
Confidence 98888777888888764 45555555555543
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.6e-20 Score=163.29 Aligned_cols=119 Identities=21% Similarity=0.480 Sum_probs=102.9
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-----CCCcEEEEEEEECCCC
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-----ESTQHLVVRIYDDEGI 334 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~~~~L~i~v~d~~~~ 334 (569)
++|+|++|+||+..+..|.+||||+++++ .++++|++++++.||+|||+|.|.+.. .....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~---~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG---KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC---CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47999999999999988999999999997 677899999999999999999999976 3567899999999998
Q ss_pred CCCcceEEEEEEccccC--CCceeEEEEEccccccccCCCcceeEEEEEEE
Q 008334 335 QSSELIGCAQVRLCELE--PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 383 (569)
Q Consensus 335 ~~d~~iG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~ 383 (569)
++|++||++.+++.++. .+.....|++|..... ...+.+|+|++.++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~--~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG--KDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC--CCccccceEEEEeC
Confidence 88999999999999987 5667789999974321 34567899999863
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=3.5e-20 Score=158.06 Aligned_cols=113 Identities=25% Similarity=0.470 Sum_probs=98.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCC-CCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 521 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~- 521 (569)
|.|.|+|++|++++..+ .|.+||||++.+++ .+++|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMD 77 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCC
Confidence 78999999999988777 68999999999976 6779999865 79999999999999854 4679999999999886
Q ss_pred ceeEEEEEecc-eeeecceEeEEEEcCC----CCCeEEEEEEEE
Q 008334 522 DYMGRCILTLT-RVILEGEYTDCFELDG----TKSGKLKLHLKW 560 (569)
Q Consensus 522 d~lG~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~~~~ 560 (569)
++||.+.+++. .+..+...+.||+|.+ ...|+|+|+++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 79999999996 4666666799999976 457999999986
No 8
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.83 E-value=3.3e-20 Score=159.53 Aligned_cols=117 Identities=35% Similarity=0.567 Sum_probs=102.7
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 336 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~ 336 (569)
|.|+|+|++|++|++.+..+.+||||+++++ .++++|+++. ++.||+|||+|.|.+.....+.|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999988999999999997 4678888874 5799999999999998766678999999999876
Q ss_pred CcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 337 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 337 d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
|++||++.+++.++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc------CCcEeeEEEEEEEC
Confidence 8999999999999877766789999853 34688999999986
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=1.1e-19 Score=156.83 Aligned_cols=120 Identities=33% Similarity=0.531 Sum_probs=106.5
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|+|+|++|++|+..+..|.+||||+++++ +.+.++|+++.++.||+|||+|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~--~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYG--GKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEEC--CEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 78999999999999988999999999986 24678999999999999999999998764 4689999999999989999
Q ss_pred eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
||.+.+++.++..+...+.|++|... +..+..|+|++.+.|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDP----NSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCC----CCccCceEEEEEEEECC
Confidence 99999999999988889999999642 22467999999999865
No 10
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=1.3e-19 Score=154.07 Aligned_cols=108 Identities=23% Similarity=0.387 Sum_probs=92.9
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEe----cCCCCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEEEC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVR----PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDD 331 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~ 331 (569)
.|+|+|++|++|+..+ .|.+||||++++. +...++++|+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 4999999999984 1223467899999999999999999999742 345799999999
Q ss_pred CCCCCCcceEEEEEEccccCCCceeEEEEEcccccc
Q 008334 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLD 367 (569)
Q Consensus 332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~ 367 (569)
+..++|++||++.+++.++..++....|++|.+...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 988889999999999999999888999999976543
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=2e-19 Score=154.42 Aligned_cols=115 Identities=30% Similarity=0.451 Sum_probs=100.0
Q ss_pred EEEEEEEeec---cccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC-
Q 008334 260 LEVKLVQAKG---LTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ- 335 (569)
Q Consensus 260 L~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~- 335 (569)
|.|+|++|++ |..+|..|.+||||+++++ .++.+|+++++++||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g---~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~ 77 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG---PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHW 77 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEEC---CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCccc
Confidence 7899999999 8888999999999999997 67889999999999999999999997654 48999999998863
Q ss_pred -----CCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEE
Q 008334 336 -----SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHL 380 (569)
Q Consensus 336 -----~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l 380 (569)
+|++||++.+++.++..+...+.|++|.... .++.+..|+|+.
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN--PSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC--CCCccCCcEEEe
Confidence 8999999999999999998899999997432 224556777764
No 12
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=1.8e-19 Score=155.79 Aligned_cols=115 Identities=37% Similarity=0.647 Sum_probs=103.9
Q ss_pred eEEEEEEEEeEcCCCCCC------CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECC
Q 008334 444 GVLSVTVILAENLPASDL------MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD 517 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~------~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~ 517 (569)
|.|+|+|++|++|+..+. .|.+||||++++++ ..++|++++++.||.|||.|.|.+.+.....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~ 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC
Confidence 579999999999998764 36899999999975 7889999999999999999999998666789999999998
Q ss_pred CCCCceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334 518 TFGKDYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 560 (569)
Q Consensus 518 ~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (569)
..++++||++.+++.++..++..++||+|.+...|+|+++++|
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 79 PDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 8855799999999999988777799999999889999999987
No 13
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=3.3e-19 Score=156.40 Aligned_cols=119 Identities=25% Similarity=0.464 Sum_probs=103.3
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 334 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~ 334 (569)
...|.|+|+|++|++|++.+..|.+||||+++++ .+.++|++++++.||.|||+|.|.+.+...+.|.|+|||++..
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 5789999999999999999988999999999996 6789999999999999999999999877777899999999998
Q ss_pred CCCcceEEEEEEccccCC-----CceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 335 QSSELIGCAQVRLCELEP-----GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 335 ~~d~~iG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
++|++||++.+++.++.. ......|..+ .++..|+|++++.+
T Consensus 89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~--------~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL--------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEEEEHHHhccccccCCCcEEEEecc--------ccccceeEEEEEEe
Confidence 899999999999999875 2222344443 35778999999876
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=2.8e-19 Score=153.91 Aligned_cols=116 Identities=27% Similarity=0.537 Sum_probs=102.4
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|+|+|++|++|++.+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999974445678999999999999999999998766566899999999988 8999
Q ss_pred eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
||++.+++.++..+.....|++|.+ +..|++++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~--------~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP--------QGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC--------CCCceEEEEEEe
Confidence 9999999999999989999999842 357888888765
No 15
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.81 E-value=9.6e-20 Score=152.60 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=91.6
Q ss_pred cccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC-CCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 252 LELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL-PEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 252 ~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
.+....|.|+|+|++|++|+ . .|.+||||++++.+. +..+++|++.++|+||+|||+|.|.+... ....|.|.|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 34567899999999999998 2 467999999999753 34678999999999999999999998643 566899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
||+|+++++++||++.++++++..+...+.|..|
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999988666666777543
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.8e-19 Score=156.67 Aligned_cols=112 Identities=22% Similarity=0.455 Sum_probs=97.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-----CCCCEEEEEEEECCCCC
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-----GLHDMLIAEVWDHDTFG 520 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-----~~~~~l~i~V~d~~~~~ 520 (569)
++|+|++|+||+..+..|.+||||++++++ .+++|++++++.||+|||.|.|.+.. +....|.++|||++..+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~ 78 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC
Confidence 479999999999998889999999999975 67899999999999999999999976 35678999999999887
Q ss_pred C-ceeEEEEEecceee--ecceEeEEEEcCCC------CCeEEEEEEE
Q 008334 521 K-DYMGRCILTLTRVI--LEGEYTDCFELDGT------KSGKLKLHLK 559 (569)
Q Consensus 521 ~-d~lG~~~i~l~~l~--~~~~~~~w~~L~~~------~~G~i~l~~~ 559 (569)
+ ++||++.|+++++. .+....+||+|.+. ..|+|+|+++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 4 79999999999987 44556899999742 4699999875
No 17
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.81 E-value=4e-19 Score=152.28 Aligned_cols=115 Identities=29% Similarity=0.445 Sum_probs=103.7
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
+++|+|++|++|+..+..+.+||||+++++ ++.++|++++++.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG---NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC---CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999996 57789999999999999999999998766779999999999988999
Q ss_pred ceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 339 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 339 ~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
+||++.+++.++..+...+.|++|.+ ..|++++.+.|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~---------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED---------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC---------CCcEEEEEEEec
Confidence 99999999999998888999999842 259999998874
No 18
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=1.8e-19 Score=154.97 Aligned_cols=115 Identities=30% Similarity=0.533 Sum_probs=101.4
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCc
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 522 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d 522 (569)
|.|+|+|.+|++|+..+..+.+||||++++++ .+.+|+++. .+.||+|||.|.|.+.....+.|.|+|||++..+++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCc
Confidence 67999999999999999889999999999976 567888875 478999999999999876667899999999887767
Q ss_pred eeEEEEEecceeeecceEeEEEEcCCC--CCeEEEEEEEE
Q 008334 523 YMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKW 560 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~i~l~~~~ 560 (569)
+||++.++++++..+....+||+|... ..|+|+++++|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 999999999998777677999999754 57999999986
No 19
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4e-19 Score=158.25 Aligned_cols=125 Identities=22% Similarity=0.405 Sum_probs=106.3
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCC-CCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINN-DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d 337 (569)
.|+|+|++|++|+..+..|.+||||+++++ ++..+|+++.+ +.||+|||+|.|.+.++..+.+.|+|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 378999999999999999999999999998 57889998866 69999999999999876667899999999988889
Q ss_pred cceEEEEEEccccCCC----ceeEEEEEccccccc---cCCCcceeEEEEEEEEEe
Q 008334 338 ELIGCAQVRLCELEPG----KVKDVWLKLVKDLDV---QRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~----~~~~~~~~L~~~~~~---~~~~~~~G~l~l~l~~~p 386 (569)
++||++.++|.++..+ ...+.|++|.+.... .+..+..|+|++.+.|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998643 446899999765321 134567899999999964
No 20
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2.9e-19 Score=155.64 Aligned_cols=121 Identities=29% Similarity=0.412 Sum_probs=103.8
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC---CcEEEEEEEECCCCC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES---TQHLVVRIYDDEGIQ 335 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---~~~L~i~v~d~~~~~ 335 (569)
.|+|+|++|++|.+.+..|.+||||+++++ ++.++|++++++.||+|||+|.|.+.+.. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 489999999999999988999999999997 57789999999999999999999987542 358999999999876
Q ss_pred -CCcceEEEEEEccccC-CCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 336 -SSELIGCAQVRLCELE-PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 336 -~d~~iG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
+|++||++.+++.++. .+.....|++|.+.. ..++.+|+|++.+.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG---LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC---CCCCccEEEEEEEEEc
Confidence 7999999999999997 567778999997532 2345789999998873
No 21
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.81 E-value=7.8e-19 Score=154.00 Aligned_cols=117 Identities=32% Similarity=0.570 Sum_probs=105.2
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 521 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~ 521 (569)
..|.|+|+|++|++|+..+..|.+||||+++++. ..++|++++++.||.|||.|.|.+.++..+.|.|+|||++..++
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 4599999999999999998889999999999965 67899999999999999999999987777889999999998765
Q ss_pred -ceeEEEEEecceeee-----cceEeEEEEcCCCCCeEEEEEEEE
Q 008334 522 -DYMGRCILTLTRVIL-----EGEYTDCFELDGTKSGKLKLHLKW 560 (569)
Q Consensus 522 -d~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~~~~ 560 (569)
++||++.+++.++.. ......|.++.+...|+|++++.+
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 799999999999886 234578899999999999999876
No 22
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=5.4e-19 Score=151.77 Aligned_cols=109 Identities=28% Similarity=0.435 Sum_probs=95.9
Q ss_pred EEEEEEEEeEc---CCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC--
Q 008334 445 VLSVTVILAEN---LPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF-- 519 (569)
Q Consensus 445 ~L~v~v~~a~~---L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~-- 519 (569)
.|+|+|++|++ |+..+..|.+||||.+++++ ++.||++++++.||+|||+|.|.+.++ ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccc
Confidence 38999999999 88889999999999999975 678999999999999999999999864 45899999999886
Q ss_pred -----CCceeEEEEEecceeeecceEeEEEEcCC------CCCeEEEE
Q 008334 520 -----GKDYMGRCILTLTRVILEGEYTDCFELDG------TKSGKLKL 556 (569)
Q Consensus 520 -----~~d~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l 556 (569)
++++||++.++++++..+.....||+|.. .+.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 55899999999999988888899999973 24677764
No 23
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.80 E-value=5e-19 Score=154.64 Aligned_cols=123 Identities=33% Similarity=0.539 Sum_probs=105.9
Q ss_pred EEEEEEEEEeeccccCCC--CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~ 335 (569)
|.|+|+|++|++|+..+. .+.+||||+++++ .++++|++++++.||+|||+|.|.+.+...+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 7899999999986 67789999999999999999999998766779999999999988
Q ss_pred CCcceEEEEEEccccC---CCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 336 SSELIGCAQVRLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
++++||++.+++.++. .......|++|.+... .......|+|++.+.|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~-~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP-GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc-CccccccceEEEEEEC
Confidence 8999999999999986 3344679999975422 2345679999999875
No 24
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=6.8e-19 Score=151.50 Aligned_cols=115 Identities=26% Similarity=0.526 Sum_probs=102.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCcee
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM 524 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~l 524 (569)
|+|+|++|++|+..+..+.+||||++++++ ...+++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 789999999999988888999999999963 2457899999999999999999999986656789999999998855899
Q ss_pred EEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334 525 GRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 560 (569)
Q Consensus 525 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (569)
|++.++++++..+.....||+|...+.|++++++..
T Consensus 82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 999999999988888899999999889999998865
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=9.5e-19 Score=149.99 Aligned_cols=114 Identities=33% Similarity=0.584 Sum_probs=103.1
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
+++|+|++|++|+..+..+.+||||++++++ .+++|+++++|.||.|||.|.|.+.+.....|.|+|||++..++ ++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~ 78 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEF 78 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCe
Confidence 3789999999999998889999999999965 67899999999999999999999987667899999999998765 79
Q ss_pred eEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEEe
Q 008334 524 MGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKWM 561 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~~ 561 (569)
||++.++++++..+.....|++|++. .|+|++.+.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 99999999999888888999999876 69999998874
No 26
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.3e-18 Score=150.13 Aligned_cols=116 Identities=28% Similarity=0.457 Sum_probs=103.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
+|+|+|++|++|+..+..|.+||||++++++ ...++|++++++.||.|||.|.|.+.+. .+.|.|+|||++..++ ++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 3789999999999999889999999999964 4578999999999999999999999764 5789999999999855 79
Q ss_pred eEEEEEecceeeecceEeEEEEcCCC----CCeEEEEEEEEee
Q 008334 524 MGRCILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMP 562 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p 562 (569)
||++.+++.++..+...+.|++|.+. ..|+|++.+.+.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999888888999999744 3699999999986
No 27
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=1.4e-18 Score=149.49 Aligned_cols=119 Identities=29% Similarity=0.464 Sum_probs=101.5
Q ss_pred EEEEEEEeeccccCC-CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 260 LEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 260 L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
|.|+|++|+||+..+ ..|.+||||+++++ +...++|+++++|.||+|||+|.|.+.+. ...|.|.|||++..++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 679999999999874 45789999999996 33578999999999999999999999754 468999999999999999
Q ss_pred ceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 339 LIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 339 ~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
+||.+.++++++..+...+.|++|.+. ...++..|+|++++.+
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPV---DADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEcc---CCCCcccEEEEEEEEC
Confidence 999999999999888888999999754 2234568999998763
No 28
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=1.9e-18 Score=150.14 Aligned_cols=122 Identities=30% Similarity=0.481 Sum_probs=104.3
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|.|+|++|++|+. ..|.+||||+++++. ..++++|+++.++.||+|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 678999999999862 2457899999999999999999999864 35689999999999888999
Q ss_pred eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334 340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 387 (569)
Q Consensus 340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 387 (569)
||++.++++++..+.....|++|.+... ...+..|+|.+++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~--~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY--EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC--CCCCcceEEEEEEEEecc
Confidence 9999999999988887889999974321 235679999999999853
No 29
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=5.2e-19 Score=152.34 Aligned_cols=105 Identities=27% Similarity=0.456 Sum_probs=93.6
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEE-e--cCCCcEEEEEEEEC
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIV-E--DESTQHLVVRIYDD 331 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v-~--~~~~~~L~i~v~d~ 331 (569)
.|.|.|+|++|++|+..+ .+.+||||++++.+.. ..++||++++++.||+|||+|.|.+ . +.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 588999999999999999 8999999999998643 3478999999999999999999987 2 23566899999999
Q ss_pred CCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
+..+++++||++.++|.++..+...+.|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999888778899987
No 30
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=1e-18 Score=151.36 Aligned_cols=121 Identities=24% Similarity=0.486 Sum_probs=105.2
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
+|+|+|++|++|...+..+.+||||+++++ ++.++|++++++.||+|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN---GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC---CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 489999999999999988899999999986 56789999999999999999999998766678999999999988999
Q ss_pred ceEEEEEEccccCCCceeEEEEEccccccc-cCCCcceeEEEEEE
Q 008334 339 LIGCAQVRLCELEPGKVKDVWLKLVKDLDV-QRDTKYRGQVHLEL 382 (569)
Q Consensus 339 ~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~-~~~~~~~G~l~l~l 382 (569)
+||.+.+++.++..+...+.|+.|.+.... ...++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999877777899999754322 23567889998875
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=1.1e-18 Score=150.22 Aligned_cols=102 Identities=31% Similarity=0.514 Sum_probs=90.0
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEe-c--cCCCCEEEEEEEECC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVV-E--DGLHDMLIAEVWDHD 517 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v-~--~~~~~~l~i~V~d~~ 517 (569)
+.|.|.|++|++|+..+ .+.+||||++++... ..+++|++++++.||+|||+|.|.+ . +.....|.|+|||++
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 77999999999999999 899999999999642 3478999999999999999999987 2 335678999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFEL 546 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (569)
..++ ++||++.++|+++...+....||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 8875 7999999999999877777999987
No 32
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.80 E-value=7.7e-19 Score=147.15 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=86.2
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC--CCeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK--SETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 517 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~--~~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~ 517 (569)
..+.|+|+|++|++|+ ..|.+||||++++.. +..+++|++.++|+||+|||+|.|.+.. ..+..|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 4588999999999998 246799999999963 2357799999999999999999999874 35668999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFEL 546 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (569)
.+++ ++||++.+++.++......++|-.|
T Consensus 89 rfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 RFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCCCceEEEEEEccccccCCccccchhcC
Confidence 9987 7999999999988666666778654
No 33
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.80 E-value=1.8e-18 Score=152.02 Aligned_cols=105 Identities=27% Similarity=0.381 Sum_probs=90.5
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEE-ECCC
Q 008334 444 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW-DHDT 518 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~-d~~~ 518 (569)
+.|.|+|++|+||+..+ ..|.+||||++++.... .+.||+++++|+||+|||+|.|.+. ..+..|.|+|| |++.
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGR 107 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCC
Confidence 77999999999998864 56889999999996432 3789999999999999999999998 56789999999 5666
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
.++ ++||++.|+|+++..+.....||+|...
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 654 7999999999998767777999999764
No 34
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.1e-18 Score=155.46 Aligned_cols=119 Identities=25% Similarity=0.305 Sum_probs=102.4
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCC-CCCCeeceEEEEEeccCCCCEEEEEEEECCCCC-Cc
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KD 522 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~-~d 522 (569)
.|+|+|++|++|+..+..|.+||||++++++ ++.+|+++.+ |.||+|||.|+|.+.++..+.+.|+|||++..+ ++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd 78 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDE 78 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCC
Confidence 3889999999999999999999999999986 7788998866 699999999999998776778999999998875 47
Q ss_pred eeEEEEEecceeeec----ceEeEEEEcCCCC-----------CeEEEEEEEEeecCC
Q 008334 523 YMGRCILTLTRVILE----GEYTDCFELDGTK-----------SGKLKLHLKWMPQPI 565 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~----~~~~~w~~L~~~~-----------~G~i~l~~~~~p~~~ 565 (569)
+||++.++|+++..+ ....+||+|.+.. +|+|+|.+.|.+.+.
T Consensus 79 ~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 79 PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 999999999998653 2358999997542 499999999987653
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=1.4e-18 Score=152.80 Aligned_cols=109 Identities=26% Similarity=0.436 Sum_probs=95.6
Q ss_pred cEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEE-ECC
Q 008334 257 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY-DDE 332 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~-d~~ 332 (569)
.|.|.|+|++|+||...+ ..|.+||||++++.+.+. .++||+++++++||+|||+|.|.+. .....|.++|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 589999999999999864 568899999999986543 4789999999999999999999998 66779999999 578
Q ss_pred CCCCCcceEEEEEEccccCCCceeEEEEEccccc
Q 008334 333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDL 366 (569)
Q Consensus 333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~ 366 (569)
.++++++||++.++|+++..+.....|++|.+..
T Consensus 107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 8888999999999999997777788999997543
No 36
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=1.2e-18 Score=152.32 Aligned_cols=115 Identities=36% Similarity=0.666 Sum_probs=101.6
Q ss_pred eEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334 444 GVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 521 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~ 521 (569)
|.|+|+|++|++|+..+. .+.+||||+++++. .+++|++++++.||.|||.|.|.+.+.....|.|+|||++..+.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~ 78 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAG 78 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCC
Confidence 679999999999999887 88999999999964 67899999999999999999999987667899999999998754
Q ss_pred -ceeEEEEEecceeee---cceEeEEEEcCCC-------CCeEEEEEEEE
Q 008334 522 -DYMGRCILTLTRVIL---EGEYTDCFELDGT-------KSGKLKLHLKW 560 (569)
Q Consensus 522 -d~lG~~~i~l~~l~~---~~~~~~w~~L~~~-------~~G~i~l~~~~ 560 (569)
++||++.+++.++.. .+...+||+|.+. .+|+|+|++.|
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 799999999999873 2345899999765 48999999987
No 37
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=4.4e-19 Score=153.93 Aligned_cols=96 Identities=34% Similarity=0.618 Sum_probs=89.2
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~ 335 (569)
..|.|+|+|++|.+|..+|..+++||||++.++ +++.||+++++++||+|||.|.|.+.++ ...|++.|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg---~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG---NQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFS 79 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEEC---CeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCC
Confidence 579999999999999999988999999999998 8899999999999999999999999987 458999999999999
Q ss_pred CCcceEEEEEEccccCCCce
Q 008334 336 SSELIGCAQVRLCELEPGKV 355 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~~~~~ 355 (569)
+||++|.|+|+|..+.....
T Consensus 80 ~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 80 SDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred cccccceeeeccHHHHHHhh
Confidence 99999999999998876543
No 38
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.5e-18 Score=149.19 Aligned_cols=122 Identities=21% Similarity=0.376 Sum_probs=102.1
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 336 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~ 336 (569)
...|+|+|++|+||+.. +.+||||+++++ +.+..+|++ .++.||.|||+|.|.+.....+.+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~--~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLN--EVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEEC--CEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999874 468999999996 235578886 468999999999998765544689999999999999
Q ss_pred CcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 337 SELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 337 d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
|++||.+.+++.++..+...+.|++|.+.. ..+.+..|+|++.++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~--~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS--PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC--CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888889999997642 124567899999999974
No 39
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.79 E-value=1.3e-18 Score=150.38 Aligned_cols=115 Identities=35% Similarity=0.634 Sum_probs=101.6
Q ss_pred EEEEEEEEEeeccccCCC------CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334 258 GTLEVKLVQAKGLTNKDL------IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~ 331 (569)
|.|+|+|++|++|+..+. .|.+||||+++++ ++.++|++++++.||+|||+|.|.+.+...+.|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998874 3689999999997 5789999999999999999999999876678999999999
Q ss_pred CCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
+.. +|++||.+.+++.++..+...+.|++|.. ...|+|++.++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~--------~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED--------VKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------CCCceEEEEEeC
Confidence 987 89999999999999988777889999842 357999998764
No 40
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=2.2e-18 Score=149.24 Aligned_cols=105 Identities=28% Similarity=0.455 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEEC
Q 008334 443 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDH 516 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~ 516 (569)
.+.|.|+|++|+||+..+.. |.+||||++++... ..+++|++++++.||+|||+|.|.+.. .....|.++|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 37799999999999999875 88999999999632 245799999999999999999999863 2456899999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
+..++ ++||++.++|.++...+....||+|.
T Consensus 94 ~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98866 69999999999997777778999974
No 41
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.78 E-value=1.1e-18 Score=151.17 Aligned_cols=110 Identities=23% Similarity=0.428 Sum_probs=95.9
Q ss_pred cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRI 328 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v 328 (569)
.+..+.|.|+|++|+||+..+.. |.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|+|
T Consensus 11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 35568999999999999999875 889999999998654 346899999999999999999999864 3456899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
||++..+++++||++.++|.++..+.....|++|+
T Consensus 91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999999999999999999998777778899873
No 42
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=2.4e-18 Score=149.39 Aligned_cols=122 Identities=28% Similarity=0.485 Sum_probs=102.3
Q ss_pred cEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334 257 VGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~ 335 (569)
.|.|+|+|++|++|+..+ ..+.+||||+++++.. .+.++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 3467899999999732 37799999999999999999999987 45679999999999988
Q ss_pred CCcceEEEEEEccccCCCceeEE-EEEccccccccCCCcceeEEEEEEEEEe
Q 008334 336 SSELIGCAQVRLCELEPGKVKDV-WLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~~~~~~~~-~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
+|++||++.+++.++..+...+. |..+ ...++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~------~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNL------LRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhh------hcCCccceEEEEEEEeCC
Confidence 99999999999999987665543 3333 235677899999999976
No 43
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=2.4e-18 Score=147.94 Aligned_cols=113 Identities=23% Similarity=0.455 Sum_probs=97.9
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|.|+|++|++|+.. .+||||+++++ .+..+|++++++.||+|||+|.|.+.+.....|.++|||++.. ++++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 78999999999877 68999999997 5678999999999999999999998776677999999999987 7899
Q ss_pred eEEEEEEccccCCC-----ceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 340 IGCAQVRLCELEPG-----KVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 340 iG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
||++.++++++... .....|++|.+.. ..+.+|+|++++.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~----~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK----GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC----CCccceEEEEEEEe
Confidence 99999999998643 2356899997542 25788999999987
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=1.9e-18 Score=149.97 Aligned_cols=110 Identities=35% Similarity=0.559 Sum_probs=98.5
Q ss_pred cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEEC
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDD 331 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~ 331 (569)
.+..|.|.|+|++|++|+..+..|.+||||++++.+.+.+.++|++++++.||+|||+|.|.+... ....|.++|||+
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~ 91 (124)
T cd08387 12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF 91 (124)
T ss_pred CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence 356799999999999999999889999999999976556789999999999999999999998643 356899999999
Q ss_pred CCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
+..+++++||++.++++++..+...+.|++|+
T Consensus 92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 99989999999999999998777889999984
No 45
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=2e-18 Score=149.33 Aligned_cols=109 Identities=18% Similarity=0.348 Sum_probs=95.8
Q ss_pred cCccEEEEEEEEEeeccccCCC-CCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
....|.|.|+|++|+||+..+. .|.+||||++++.+.+ ..++||++++++.||+|||+|.|.+... ....|.|+|
T Consensus 11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3567999999999999998765 4789999999998654 3468999999999999999999998643 456899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
||++..+++++||++.+++.++......+.|++|
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 9999999999999999999999888888999987
No 46
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=3.5e-18 Score=148.28 Aligned_cols=105 Identities=27% Similarity=0.459 Sum_probs=92.6
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF 519 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~ 519 (569)
.+.|.|+|++|++|+..+..|.+||||++++.. +..+++|++++++.||+|||+|.|.+... ....|.|+|||++..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 94 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC
Confidence 478999999999999999889999999999953 24578999999999999999999998743 356899999999988
Q ss_pred CC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 520 GK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
++ ++||++.++++++..++..+.||+|+
T Consensus 95 ~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 95 SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCceeEEEEEecccccCCCCcceEEECc
Confidence 65 79999999999998777889999986
No 47
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=4.5e-18 Score=147.84 Aligned_cols=116 Identities=24% Similarity=0.457 Sum_probs=101.6
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 524 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 524 (569)
|.|+|++|++|+. ..|.+||||+++++....+++|++++++.||+|||.|.|.+.. ....|.|+|||++..++ ++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 5789999999988 6789999999999753467899999999999999999999963 46789999999998875 799
Q ss_pred EEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeecC
Q 008334 525 GRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQP 564 (569)
Q Consensus 525 G~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~ 564 (569)
|++.+++.++.......+||+|.+. ..|+|++++.|.+..
T Consensus 78 G~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 78 GLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 9999999999888777899999744 489999999998754
No 48
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.5e-18 Score=149.77 Aligned_cols=115 Identities=25% Similarity=0.416 Sum_probs=99.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC---CCEEEEEEEECCCCC-
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL---HDMLIAEVWDHDTFG- 520 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~---~~~l~i~V~d~~~~~- 520 (569)
.|+|+|++|++|+..+..|.+||||++++++ .+++|++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGR 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcC
Confidence 3899999999999988889999999999975 6789999999999999999999997542 358999999998874
Q ss_pred -CceeEEEEEecceeee-cceEeEEEEcCCC-----CCeEEEEEEEEe
Q 008334 521 -KDYMGRCILTLTRVIL-EGEYTDCFELDGT-----KSGKLKLHLKWM 561 (569)
Q Consensus 521 -~d~lG~~~i~l~~l~~-~~~~~~w~~L~~~-----~~G~i~l~~~~~ 561 (569)
+++||++.++++++.. +....+||+|+.. .+|+|+|++.+.
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 5799999999999873 4556899999743 489999999874
No 49
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.78 E-value=4.3e-18 Score=147.28 Aligned_cols=105 Identities=24% Similarity=0.491 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334 443 RGVLSVTVILAENLPASDL-MGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 516 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~-~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~ 516 (569)
.+.|.|+|++|+||+..+. .|.+||||++++... ..++||++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 4789999999999998764 578999999999632 2467999999999999999999998642 456899999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
+..++ ++||++.+++.++......+.||+|.
T Consensus 94 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 94 DRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 98876 69999999999998888889999984
No 50
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=3.1e-18 Score=147.28 Aligned_cols=110 Identities=29% Similarity=0.489 Sum_probs=96.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCcee
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM 524 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~l 524 (569)
+|+|+|++|++|+.. .+||||++++++ .+.+|++++++.||+|||+|.|.+.++....|.++|||++..++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence 489999999999887 689999999975 67899999999999999999999987667889999999998766899
Q ss_pred EEEEEecceeeecc-----eEeEEEEcCCCC----CeEEEEEEEE
Q 008334 525 GRCILTLTRVILEG-----EYTDCFELDGTK----SGKLKLHLKW 560 (569)
Q Consensus 525 G~~~i~l~~l~~~~-----~~~~w~~L~~~~----~G~i~l~~~~ 560 (569)
|++.++++++.... ...+||+|.+.. .|+|+|.++|
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 99999999987543 246999997653 6999999987
No 51
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=6.6e-18 Score=152.04 Aligned_cols=123 Identities=27% Similarity=0.485 Sum_probs=103.8
Q ss_pred cEEEEEEEEEeeccccCC------------------------------CCCCCCcEEEEEEecCCCCeEEeeecCCCCCC
Q 008334 257 VGTLEVKLVQAKGLTNKD------------------------------LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP 306 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP 306 (569)
.|.|.|+|++|++|+++| ..|.+||||+++++ +.+..+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~--~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA--GARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC--CeEeeEEEEeCCCCCC
Confidence 599999999999999987 24668999999997 2345799999999999
Q ss_pred eeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 307 IWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 307 ~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
+|||+|.|.+.+. .+.|.|+|||++..+ +++||.+.++++++..+...+.|++|.+.. .+..+..|.|+++++|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~--~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSN--GKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCC--CCCCCCCCEEEEEEEEC
Confidence 9999999998754 458999999999875 689999999999998888889999997542 23445678999999983
No 52
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=7.7e-18 Score=145.95 Aligned_cols=105 Identities=26% Similarity=0.462 Sum_probs=88.9
Q ss_pred ceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334 443 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 516 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~ 516 (569)
.+.|.|+|++|+||+..+.. |.+||||++++... ..++||++++++.||+|||+|.|.+... ....|.+.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 47899999999999998865 89999999999632 2477999999999999999999998642 356899999999
Q ss_pred CCCCC-ceeEEEEEecceeeec---ceEeEEEEcC
Q 008334 517 DTFGK-DYMGRCILTLTRVILE---GEYTDCFELD 547 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~---~~~~~w~~L~ 547 (569)
+..++ ++||++.|+|.++... .....||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 98765 7999999999998554 2568999984
No 53
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=8.6e-18 Score=147.79 Aligned_cols=122 Identities=27% Similarity=0.474 Sum_probs=102.4
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 334 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~ 334 (569)
.|+|+|++|++|+..+..|.+||||++++.... ...++|++++++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 378999999999999988999999999997421 1257899999999999999999998643 46899999999999
Q ss_pred CCCcceEEEEEEccccCCCce------eEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 335 QSSELIGCAQVRLCELEPGKV------KDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 335 ~~d~~iG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR---SSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec---CCCCcceeEEEEEEee
Confidence 899999999999999875432 4589999753 2245679999999987
No 54
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.77 E-value=8.8e-18 Score=151.22 Aligned_cols=118 Identities=24% Similarity=0.457 Sum_probs=102.1
Q ss_pred cceEEEEEEEEeEcCCCCC------------------------------CCCCCCcEEEEEEeCCCeeEeecccCCCCCC
Q 008334 442 IRGVLSVTVILAENLPASD------------------------------LMGKADPYVVLTMKKSETRNKTRVVNDCLNP 491 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~------------------------------~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP 491 (569)
-.|.|.|+|++|++|+.+| ..|.+||||++++++ .+..+|++++++.||
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~~nP 83 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENSENP 83 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCCCCC
Confidence 4599999999999999876 346689999999975 355799999999999
Q ss_pred eeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEe
Q 008334 492 IWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWM 561 (569)
Q Consensus 492 ~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~ 561 (569)
+|||+|.|.+.+. .+.|.|+|||++..++++||++.++++++..+...++||+|.+. +.|+|+++++|.
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999998754 46799999999988889999999999999887778999999642 368999999984
No 55
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.76 E-value=1.3e-17 Score=143.68 Aligned_cols=118 Identities=33% Similarity=0.595 Sum_probs=101.9
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d 337 (569)
|.|.|+|++|++|+..+..+.+||||++++. ...++|++++++.||.|||+|.|.+.+. .+.+.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~---~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV---NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC---CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999987 4568999999999999999999998653 46899999999988889
Q ss_pred cceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 338 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
++||++.+++.++..+. ..|++|... ....+..|+|.+++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~--~~~~~l~~~---~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGE--RKWYALKDK---KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCC--ceEEECccc---CCCCceeeEEEEEEEe
Confidence 99999999999987654 579998643 2244579999999876
No 56
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=6.6e-18 Score=141.79 Aligned_cols=102 Identities=32% Similarity=0.481 Sum_probs=91.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCcee
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYM 524 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~l 524 (569)
.|.|+|++|++|+..+..+.+||||++++++ .+++|++++++.||+|||.|.|.+.++..+.|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCcc
Confidence 3789999999999988889999999999986 78899999999999999999999998777899999999887 6799
Q ss_pred EEEEEecceeeecc--eEeEEEEcCCCC
Q 008334 525 GRCILTLTRVILEG--EYTDCFELDGTK 550 (569)
Q Consensus 525 G~~~i~l~~l~~~~--~~~~w~~L~~~~ 550 (569)
|++.++|.++.... ..++||+|.+++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCCC
Confidence 99999999998654 568999998754
No 57
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=6.1e-18 Score=146.76 Aligned_cols=109 Identities=32% Similarity=0.535 Sum_probs=97.5
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE 332 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~ 332 (569)
...|.|.|+|++|+||+..+..+.+||||++++.+...+.++|++++++.||+|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 46789999999999999999889999999999986666788999999999999999999998642 3568999999999
Q ss_pred CCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
.++++++||++.+++.++..+...+.|++|.
T Consensus 93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9989999999999999998888889999873
No 58
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.76 E-value=1.8e-17 Score=143.95 Aligned_cols=123 Identities=17% Similarity=0.282 Sum_probs=103.3
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~ 335 (569)
+.++|+|+|++|++|...+..|.+||||++.++ ++.++|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCE---GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEEC---CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999987 5678999999999999999999988754 56899999999887
Q ss_pred CCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 336 SSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
.|++||++.+++.++.. ....|++|.+... ...++..|+|.+++.+.+
T Consensus 76 ~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~-~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDS--QTLRTLPLRKRGR-DAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCC--cCceEEEcccCCC-CCCCCCCCEEEEEEEEcc
Confidence 48999999999987643 3446777764332 356788999999998763
No 59
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.9e-17 Score=143.63 Aligned_cols=115 Identities=18% Similarity=0.355 Sum_probs=97.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d 522 (569)
..|+|+|++|+||+.. +.+||||++++++ .+..+|++ +++.||.|||.|.|.+..+....+.|.|||++..++ +
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 5699999999999874 4789999999964 34568887 468999999999998765544679999999988865 6
Q ss_pred eeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeec
Q 008334 523 YMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ 563 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~ 563 (569)
+||++.++|+++..++..+.||+|.+. ..|+|+|+++|.+.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 999999999999887778999999653 35999999999874
No 60
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.76 E-value=1.2e-17 Score=143.75 Aligned_cols=113 Identities=21% Similarity=0.340 Sum_probs=97.4
Q ss_pred EEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 446 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 446 L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
|.|.|.+|+||+..+ ..|.+||||++++++ ...++|+++++|.||.|||+|.|.+.+. ...|.|.|||++..+. ++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCce
Confidence 678999999999864 467899999999964 4568999999999999999999999853 4689999999998865 79
Q ss_pred eEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334 524 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 560 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (569)
||.+.++++++..++..+.||+|+.. ..|+|++++.+
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999877777999999753 37999998764
No 61
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=4.7e-18 Score=145.92 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=94.9
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVR 327 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~ 327 (569)
+.+..|.|.|+|++|+||...+..+.+||||++++.|.++ ..+||++++++.||+|||+|.|.+... ....|.+.
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 4466799999999999999988888999999999987663 478999999999999999999998643 56799999
Q ss_pred EEECCCCCCCcceEEEEEEccccCCC-ceeEEEEEc
Q 008334 328 IYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKL 362 (569)
Q Consensus 328 v~d~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L 362 (569)
|||++..+++++||.+.++|+++... .....|++|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999999999999999999999544 346678764
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=3.6e-18 Score=144.86 Aligned_cols=102 Identities=26% Similarity=0.523 Sum_probs=89.3
Q ss_pred EEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEEECCC
Q 008334 258 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 333 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~~~ 333 (569)
|+|+|+|++|++|+..+.. +.+||||++++.+.+...++|+++++++||+|||+|.|.+... ..+.|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999975445678999999999999999999987643 35689999999999
Q ss_pred CCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 334 IQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
.++|++||++.+++.++.. ...|+++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 9899999999999999973 3467765
No 63
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=7e-18 Score=149.31 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=89.8
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEe---------------cCCC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVE---------------DEST 321 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~---------------~~~~ 321 (569)
.|.|+|++|++|.. ..|.+||||++++.+.. .+.++|++++++.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 47899999999997 46899999999997432 25688999999999999999999985 1233
Q ss_pred cEEEEEEEECCCCCCCcceEEEEEEccccCCC-ceeEEEEEccccc
Q 008334 322 QHLVVRIYDDEGIQSSELIGCAQVRLCELEPG-KVKDVWLKLVKDL 366 (569)
Q Consensus 322 ~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L~~~~ 366 (569)
..|.|+|||++..++|++||++.+++.++..+ .....|++|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 57999999999888999999999999999876 5678999997543
No 64
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.75 E-value=1.2e-17 Score=145.24 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=93.8
Q ss_pred cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEE-Eec--CCCcEEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY 329 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~v~ 329 (569)
....+.|.|+|++|+||+..+.. |.+||||++++.+...++.||++++++.||+|||+|.|. +.. .....|.++||
T Consensus 12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 35568999999999999998876 889999999998766677899999999999999999993 432 23457999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCC--ceeEEEEEcc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLV 363 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~ 363 (569)
|++..++|++||++.++|.++... .....|++++
T Consensus 92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999999999999999998544 5678899875
No 65
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.75 E-value=2.2e-17 Score=143.32 Aligned_cols=105 Identities=33% Similarity=0.525 Sum_probs=91.8
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF 519 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~ 519 (569)
.+.|.|+|++|++|+..+..|.+||||++++.. ...+++|++++++.||+|||.|.|.+... ....|.|+|||++..
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 478999999999999998889999999999864 23578999999999999999999998642 346899999999988
Q ss_pred CC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 520 GK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
++ ++||++.++++++..+...++|++|+
T Consensus 95 ~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 65 79999999999997777789999986
No 66
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=1.2e-17 Score=142.20 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=88.9
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-----CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEEC
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH 516 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~ 516 (569)
.|+|+|++|++|+..+ .|.+||||++++.+ ..++++|+++.+|.||+|||+|+|.+.. .....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999887 48999999999842 2235789999999999999999999973 3446799999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
+..++ ++||++.++++++..++....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 87765 6999999999999988888999999753
No 67
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.75 E-value=1.4e-17 Score=142.64 Aligned_cols=103 Identities=23% Similarity=0.466 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 518 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~ 518 (569)
.+.|.|+|++|+||+..+ .|.+||||++++... ..+++|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 478999999999999988 789999999999642 2467999999999999999999998642 23578999999987
Q ss_pred CC--CceeEEEEEecceeeecceEeEEEEc
Q 008334 519 FG--KDYMGRCILTLTRVILEGEYTDCFEL 546 (569)
Q Consensus 519 ~~--~d~lG~~~i~l~~l~~~~~~~~w~~L 546 (569)
.+ +++||.+.|++.++..+....+||.|
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 64 36999999999999876667999976
No 68
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.75 E-value=1.2e-17 Score=144.85 Aligned_cols=109 Identities=20% Similarity=0.418 Sum_probs=93.5
Q ss_pred cCccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
....+.|.|+|++|+||+.++.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 35678999999999999998865 899999999998754 3467999999999999999999998643 356899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCC---ceeEEEEEc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPG---KVKDVWLKL 362 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~---~~~~~~~~L 362 (569)
||++.++++++||++.++|.++... .....|++|
T Consensus 91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999998999999999999998543 356789987
No 69
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=3.3e-17 Score=144.11 Aligned_cols=119 Identities=22% Similarity=0.401 Sum_probs=99.6
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC---------CCcEEEEEEE
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------STQHLVVRIY 329 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~v~ 329 (569)
.|+|+|++|++|+..|..|.+||||+++++ +++++|++++++.||+|||+|.|.+... ....|.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL---NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC---CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 489999999999999999999999999997 6788999999999999999999975432 1247999999
Q ss_pred ECCCCCCCcceEEEEE-EccccC---CCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 330 DDEGIQSSELIGCAQV-RLCELE---PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
|++..++|++||++.+ ++..+. .+.....|++|.+ .+...|+|.+++++.+
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~------~~~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK------GGQSAGELLAAFELIE 133 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec------CCCchhheeEEeEEEE
Confidence 9999989999999986 443343 3456789999953 3468999999999986
No 70
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.74 E-value=1.1e-17 Score=143.33 Aligned_cols=106 Identities=25% Similarity=0.471 Sum_probs=90.9
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECC
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 332 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~ 332 (569)
..|.|.|+|++|+||++.+ .|.+||||++++.+... .++||++++++.||+|||+|.|.+... ....|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999988 78999999999986543 366899999999999999999998643 2347899999998
Q ss_pred CCC-CCcceEEEEEEccccCCCceeEEEEEc
Q 008334 333 GIQ-SSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 333 ~~~-~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
... ++++||++.+++.++..+...+.|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 865 478999999999999877778899875
No 71
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=1.5e-17 Score=139.62 Aligned_cols=99 Identities=31% Similarity=0.410 Sum_probs=89.3
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
.|.|+|++|++|+..+..+.+||||+++++ ++.++|+++.++.||+|||+|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVG---KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEEC---CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 378999999999998888999999999998 588999999999999999999999988777799999999886 78
Q ss_pred ceEEEEEEccccCCC--ceeEEEEEcc
Q 008334 339 LIGCAQVRLCELEPG--KVKDVWLKLV 363 (569)
Q Consensus 339 ~iG~~~i~l~~l~~~--~~~~~~~~L~ 363 (569)
+||++.++|.++... ...+.|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 999999999998654 3678999985
No 72
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=1.4e-17 Score=144.03 Aligned_cols=110 Identities=30% Similarity=0.404 Sum_probs=97.2
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEE-Eec--CCCcEEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFI-VED--ESTQHLVVRIY 329 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~--~~~~~L~i~v~ 329 (569)
+....+.|.|+|++|+||++.+..|.+||||++.+.+...++++|+++++ .||+|||+|.|. +.. .....|.++||
T Consensus 11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 34567899999999999999998889999999998876677889998887 999999999998 542 24668999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
|++..+++++||++.++|+++..+.....|++|+
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9999999999999999999998888899999985
No 73
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=3e-17 Score=141.48 Aligned_cols=118 Identities=26% Similarity=0.520 Sum_probs=99.4
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|.|+|++|++|++.+..|.+||||++.++ +...++|+++.++.||+|||.|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD--NEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC--CEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999986 23457999999999999999999998643 4689999999999999999
Q ss_pred eEEEEEEccccCCC-ceeEEEEEccccccccCCCcceeEEEEEEE
Q 008334 340 IGCAQVRLCELEPG-KVKDVWLKLVKDLDVQRDTKYRGQVHLELL 383 (569)
Q Consensus 340 iG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~ 383 (569)
||++.+++.++..+ ...+.|++|.+. ...+...|+|++.+.
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~---~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV---DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee---CCCCccccEEEEEEE
Confidence 99999999888653 346799999643 223456899988764
No 74
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=3.7e-17 Score=143.37 Aligned_cols=115 Identities=24% Similarity=0.458 Sum_probs=100.1
Q ss_pred cEEEEEEEEEeeccccCCCC----------CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEE
Q 008334 257 VGTLEVKLVQAKGLTNKDLI----------GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVV 326 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i 326 (569)
.|.|+|+|++|++|...+.. +.+||||+++++ +.+..+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD--DTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC--CEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 58999999999999988752 578999999997 234578999999999999999999996 3468999
Q ss_pred EEEECCCCCCCcceEEEEEEccccCC--CceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 327 RIYDDEGIQSSELIGCAQVRLCELEP--GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 327 ~v~d~~~~~~d~~iG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
+|||++..+++++||.+.++|.++.. +...+.|++|. +.|.|++.+.|.
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~----------~~G~l~l~~~~~ 129 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE----------PQGKLHVKIELK 129 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc----------CCcEEEEEEEEe
Confidence 99999988889999999999999987 56679999983 469999999986
No 75
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=2e-17 Score=142.07 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=89.6
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC----eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEE
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD 515 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~----~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d 515 (569)
..+.|.|+|++|+||+..+..|.+||||++++-... .+++|++++++.||+|||+|+|.+.. ..+..|.++|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 457899999999999998888899999999985322 47899999999999999999999863 256789999999
Q ss_pred CCCCCC-ceeEEEEEecceeeec-ceEeEEEEc
Q 008334 516 HDTFGK-DYMGRCILTLTRVILE-GEYTDCFEL 546 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L 546 (569)
.+..++ ++||.+.|+|.++... +....||.|
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998765 7999999999998554 346889876
No 76
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2.9e-17 Score=142.24 Aligned_cols=112 Identities=29% Similarity=0.525 Sum_probs=98.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
+|+|+|++|++|+..+..+.+||||++++++ .+.+|++++++.||.|||+|.|.+.......|.|+|||++..++ ++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDF 78 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcE
Confidence 4899999999999998888999999999965 67899999999999999999999987667789999999998875 79
Q ss_pred eEEEEEecceeeecceEeEEEEcCC---------CCCeEEEEEE
Q 008334 524 MGRCILTLTRVILEGEYTDCFELDG---------TKSGKLKLHL 558 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~~ 558 (569)
||++.+++.++...+....||.|.. ...|.|++.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999977666789999864 2468888876
No 77
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.74 E-value=5.2e-17 Score=141.61 Aligned_cols=105 Identities=34% Similarity=0.507 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|+||+..+..+.+||||++++... ..+++|++++++.||+|||+|.|.+.. .....|.|.|||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 4789999999999999998899999999999632 357899999999999999999999863 24568999999998
Q ss_pred CC--C-CceeEEEEEecceeeecceEeEEEEcC
Q 008334 518 TF--G-KDYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 518 ~~--~-~d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
.. + +++||++.+++.++..+....+||+|.
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred cccCCCCceEEEEEEecccccccCCccceEECc
Confidence 74 3 479999999999997777779999884
No 78
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=3.7e-17 Score=142.11 Aligned_cols=104 Identities=30% Similarity=0.547 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC---CCCEEEEEEEEC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDH 516 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~ 516 (569)
.+.|.|+|++|++|+..+..+.+||||++++.+. ..+++|++++++.||+|||+|.|.+... ....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 4789999999999999988899999999999642 3577999999999999999999986432 456899999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
+..++ ++||++.++|++.. ......||+|+
T Consensus 95 ~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 95 DRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 98765 79999999999843 33347899985
No 79
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=2.5e-17 Score=143.20 Aligned_cols=110 Identities=25% Similarity=0.421 Sum_probs=96.9
Q ss_pred cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIYD 330 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~d 330 (569)
....+.|.|+|++|++|+..+..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+.. .....|.++|||
T Consensus 12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 35678999999999999999988999999999997555677899999999999999999997532 234579999999
Q ss_pred CCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
++..+++++||++.+++.++..+.....|+.|+
T Consensus 92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999889999999999999998888889999985
No 80
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=3.8e-17 Score=141.29 Aligned_cols=118 Identities=26% Similarity=0.533 Sum_probs=98.0
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC--C
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS--S 337 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~--d 337 (569)
|+|+|++|++|...+..+.+||||+++++ +.+.++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~--~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD--GGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC--CccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 78999999999999988999999999995 3677899999999999999999999964 6799999999998765 5
Q ss_pred cceEEEEEEccccCCCc-eeEEEEEccccccccCCCcceeEEEEEE
Q 008334 338 ELIGCAQVRLCELEPGK-VKDVWLKLVKDLDVQRDTKYRGQVHLEL 382 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~G~l~l~l 382 (569)
++||++.+++.++.... ....|++|.+... ...+...|+|.+.+
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCCC-CCCceEeeEEEEEe
Confidence 89999999999986544 3467999854321 23455688888765
No 81
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=6.6e-17 Score=140.81 Aligned_cols=116 Identities=31% Similarity=0.477 Sum_probs=100.7
Q ss_pred EEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCCCcceE
Q 008334 264 LVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQSSELIG 341 (569)
Q Consensus 264 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~d~~iG 341 (569)
|++|++|+. ..|.+||||+++++ +..++|++++++.||+|||+|.|.+... ..+.|.|+|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~---~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR---GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC---CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 688999998 67899999999997 5678999999999999999999999754 4678999999999988999999
Q ss_pred EEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334 342 CAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 388 (569)
Q Consensus 342 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~ 388 (569)
++.++++++..+.....|++|... +.....|+++++++|.|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~----~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS----NGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC----CCCcccEEEEEEEEEeCCC
Confidence 999999999988888999999642 1233579999999999854
No 82
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=6.3e-17 Score=141.90 Aligned_cols=116 Identities=23% Similarity=0.453 Sum_probs=100.3
Q ss_pred ceEEEEEEEEeEcCCCCCCC----------CCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEE
Q 008334 443 RGVLSVTVILAENLPASDLM----------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAE 512 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~----------g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~ 512 (569)
.|.|+|+|++|++|...+.. |.+||||++++++ ....+|++++++.||.|||+|+|.+. ....|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEE
Confidence 58899999999999987752 6799999999975 34578999999999999999999997 35789999
Q ss_pred EEECCCCCC-ceeEEEEEecceeee--cceEeEEEEcCCCCCeEEEEEEEEeec
Q 008334 513 VWDHDTFGK-DYMGRCILTLTRVIL--EGEYTDCFELDGTKSGKLKLHLKWMPQ 563 (569)
Q Consensus 513 V~d~~~~~~-d~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~~~~~p~ 563 (569)
|||++..+. ++||++.++|+++.. ....+.|++|+ +.|+|+++++|...
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~ 131 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS 131 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence 999988765 699999999999887 45569999998 46999999999863
No 83
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.73 E-value=6.1e-17 Score=140.92 Aligned_cols=117 Identities=26% Similarity=0.461 Sum_probs=99.7
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
.|+|+|++|++|+..+..+.+||||++.....+.+.++|++++++.||.|||+|.|.+.....+.|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999998899999999997643345789999999999999999999998755678999999999888899
Q ss_pred ceEEEEEEccccCC---CceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 339 LIGCAQVRLCELEP---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 339 ~iG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
+||++.+++.++.. +...+.|++|. ..|.+++.+.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEe
Confidence 99999999987632 44678999983 258898888875
No 84
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.73 E-value=9.8e-17 Score=139.43 Aligned_cols=105 Identities=31% Similarity=0.482 Sum_probs=87.7
Q ss_pred ceEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEE-ec--cCCCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VE--DGLHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~-v~--~~~~~~l~i~V~d~~ 517 (569)
.+.|+|+|++|++|+..+.. |.+||||++++.. ...+.||++++++.||+|||+|.|. +. +.....|.++|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 47899999999999998875 8899999999963 2356799999999999999999994 43 223457999999998
Q ss_pred CCCC-ceeEEEEEecceeeec--ceEeEEEEcC
Q 008334 518 TFGK-DYMGRCILTLTRVILE--GEYTDCFELD 547 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~ 547 (569)
..++ ++||++.++|+++... ++...|.+|+
T Consensus 95 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 8765 7999999999998655 5678898875
No 85
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=2.5e-17 Score=138.30 Aligned_cols=94 Identities=15% Similarity=0.294 Sum_probs=82.2
Q ss_pred EEEEEEEEEeeccccCCCC----CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC-CcEEEEEEEECC
Q 008334 258 GTLEVKLVQAKGLTNKDLI----GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDE 332 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~----g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~v~d~~ 332 (569)
|+|.|+|++|++|+..+.. +.+||||+++++ ++.+||++++++.||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~---~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG---RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC---CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987632 358999999996 67889999999999999999999987543 357999999999
Q ss_pred CCCCCcceEEEEEEccccCCCc
Q 008334 333 GIQSSELIGCAQVRLCELEPGK 354 (569)
Q Consensus 333 ~~~~d~~iG~~~i~l~~l~~~~ 354 (569)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999986543
No 86
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=4.5e-17 Score=141.97 Aligned_cols=109 Identities=26% Similarity=0.437 Sum_probs=95.5
Q ss_pred cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 329 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~ 329 (569)
....+.|+|+|++|+||+..+..+.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.+.||
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 35678999999999999999988999999999997543 4678999999999999999999998543 3568999999
Q ss_pred ECCCC--CCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 330 DDEGI--QSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 330 d~~~~--~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
|++.. +++++||++.+++.++..+.....|++|
T Consensus 92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99875 6899999999999999887788899987
No 87
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.4e-16 Score=138.34 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=101.0
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 523 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 523 (569)
++|+|+|++|++|...+..|.+||||++++++ ..++|++++++.||+|||.|.|.+.+. ...|.|+|||++..++++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~ 79 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEF 79 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCc
Confidence 68999999999999998889999999999875 678999999999999999999988754 678999999999887789
Q ss_pred eEEEEEecceeeecceEeEEEEcC-------CCCCeEEEEEEEEeecCC
Q 008334 524 MGRCILTLTRVILEGEYTDCFELD-------GTKSGKLKLHLKWMPQPI 565 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~~~~~p~~~ 565 (569)
||.+.+++.++. ....++|+|. +...|.|.+++...+.++
T Consensus 80 lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~~ 126 (126)
T cd04046 80 LGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDLT 126 (126)
T ss_pred eEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEccccC
Confidence 999999998753 3446788883 235899999998887654
No 88
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=5.9e-17 Score=140.41 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=97.2
Q ss_pred cCccEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 330 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d 330 (569)
....+.|.|+|++|++|+..+ ..+.+||||++++.+.+.+.++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d 89 (123)
T cd08390 10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD 89 (123)
T ss_pred CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence 356789999999999999988 678899999999976556778999999999999999999998643 24579999999
Q ss_pred CCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
++..+++++||++.++|.++........|++|.
T Consensus 90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999888999999999999998888889999984
No 89
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=3.5e-17 Score=141.84 Aligned_cols=108 Identities=20% Similarity=0.458 Sum_probs=94.3
Q ss_pred CccEEEEEEEEEeeccccCC-CCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKD-LIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIY 329 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~ 329 (569)
...|.|.|+|++|+||+..+ ..+.+||||++++.+.+. .+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 56789999999999999988 678999999999975433 568999999999999999999998643 3568999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
|++..+++++||++.+++.++..+...+.|++|
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999988999999999999999777778899986
No 90
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=7.9e-17 Score=139.64 Aligned_cols=105 Identities=26% Similarity=0.522 Sum_probs=90.0
Q ss_pred cceEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEE
Q 008334 442 IRGVLSVTVILAENLPASD-LMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD 515 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d 515 (569)
..+.|.|+|++|+||+..+ ..+.+||||++++... ..+++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 3478999999999999988 7789999999998532 1468999999999999999999998642 35689999999
Q ss_pred CCCCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334 516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (569)
++..++ ++||++.++|.++..+.....||+|
T Consensus 92 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 998766 7999999999999777777999987
No 91
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=9e-17 Score=145.17 Aligned_cols=108 Identities=32% Similarity=0.473 Sum_probs=92.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEE
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWD 515 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d 515 (569)
..|.|.|+|++|++|+..+..|.+||||++++.. +..+++|++++++.||.|||.|.|.+.. .....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 5689999999999999999889999999999853 2357899999999999999999998532 234579999999
Q ss_pred CCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
++..++ ++||++.+++.++...+....|+.+.+.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~ 139 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE 139 (162)
T ss_pred CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence 998875 7999999999998877777889888653
No 92
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=8.9e-17 Score=139.54 Aligned_cols=118 Identities=31% Similarity=0.558 Sum_probs=99.2
Q ss_pred eEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-
Q 008334 444 GVLSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK- 521 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~- 521 (569)
|.|+|+|++|++|+..+ ..+.+||||++++++....++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCC
Confidence 78999999999999655 456789999999974236789999999999999999999988 457789999999988755
Q ss_pred ceeEEEEEecceeeecceEeE-EEEc--CCCCCeEEEEEEEEee
Q 008334 522 DYMGRCILTLTRVILEGEYTD-CFEL--DGTKSGKLKLHLKWMP 562 (569)
Q Consensus 522 d~lG~~~i~l~~l~~~~~~~~-w~~L--~~~~~G~i~l~~~~~p 562 (569)
++||++.+++.++........ ++.+ .++..|+|+++++|.|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 799999999999987765543 3433 4567899999999987
No 93
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=9.2e-17 Score=138.42 Aligned_cols=112 Identities=26% Similarity=0.467 Sum_probs=96.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 524 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 524 (569)
|.|+|++|++|+..+..|.+||||++++++ ....+|++++++.||.|||.|.|.+.. ....|.|+|||++..+. ++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEE
Confidence 789999999999999999999999999964 345799999999999999999999874 34689999999998876 799
Q ss_pred EEEEEecceeeecc-eEeEEEEcCCC-----CCeEEEEEEE
Q 008334 525 GRCILTLTRVILEG-EYTDCFELDGT-----KSGKLKLHLK 559 (569)
Q Consensus 525 G~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~i~l~~~ 559 (569)
|++.+++.++.... ..++|++|++. ..|+|++++.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999886543 36899999763 3799998864
No 94
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=5.1e-17 Score=137.72 Aligned_cols=102 Identities=25% Similarity=0.411 Sum_probs=90.1
Q ss_pred CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeec-ce
Q 008334 461 LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE-GE 539 (569)
Q Consensus 461 ~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~-~~ 539 (569)
.+|.+||||++++++ ....+|++++++.||.|||.|.|.+.+.....|.|+|||++..++++||++.++|+++... ..
T Consensus 9 ~~G~~dPYv~v~v~~-~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNG-KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECC-EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 578899999999975 3567999999999999999999999877778899999999988558999999999998654 44
Q ss_pred EeEEEEcCCCCCeEEEEEEEEeec
Q 008334 540 YTDCFELDGTKSGKLKLHLKWMPQ 563 (569)
Q Consensus 540 ~~~w~~L~~~~~G~i~l~~~~~p~ 563 (569)
..+||+|.+.+.|+|+++++|.|+
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKPV 111 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEecC
Confidence 589999998889999999999985
No 95
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.71 E-value=2.9e-17 Score=142.66 Aligned_cols=93 Identities=40% Similarity=0.699 Sum_probs=85.0
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 521 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~ 521 (569)
..|.|+|.|.+|.+|...|..+++||||.+.+++ ++.+|+++++++||+|||.|+|.+.++ ...|.++|||+|.++.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSS 80 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCc
Confidence 3589999999999999999889999999999986 788999999999999999999999986 6789999999999976
Q ss_pred -ceeEEEEEecceeeec
Q 008334 522 -DYMGRCILTLTRVILE 537 (569)
Q Consensus 522 -d~lG~~~i~l~~l~~~ 537 (569)
|+||.++|+|..+...
T Consensus 81 dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEA 97 (168)
T ss_pred ccccceeeeccHHHHHH
Confidence 7999999999876543
No 96
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=1.4e-16 Score=137.67 Aligned_cols=105 Identities=31% Similarity=0.429 Sum_probs=90.2
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEE-ecc--CCCCEEEEEEEECCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFV-VED--GLHDMLIAEVWDHDT 518 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~-v~~--~~~~~l~i~V~d~~~ 518 (569)
.+.|.|+|++|+||+..+..|..||||++.+.. +..+++|+++++ .||+|||+|.|. +.. ..+..|.++|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 478999999999999998888999999988743 346789999887 999999999998 542 246789999999998
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG 548 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (569)
.++ ++||++.|+|+++..++....||+|+.
T Consensus 94 ~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 875 799999999999987778899999873
No 97
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.4e-16 Score=140.10 Aligned_cols=116 Identities=27% Similarity=0.521 Sum_probs=98.4
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-----CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF 519 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-----~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~ 519 (569)
.|+|+|++|++|+..+..|.+||||++++++. ....+|+++++|.||.|||+|.|.+.. ....|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP-REHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC-CCCEEEEEEEECCCC
Confidence 37899999999999998899999999999753 125689999999999999999999874 356799999999988
Q ss_pred CC-ceeEEEEEecceeeecce------EeEEEEcCCC-----CCeEEEEEEEEe
Q 008334 520 GK-DYMGRCILTLTRVILEGE------YTDCFELDGT-----KSGKLKLHLKWM 561 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~------~~~w~~L~~~-----~~G~i~l~~~~~ 561 (569)
++ ++||++.+++.++..... ...||+|++. ..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 65 799999999999886542 3699999742 489999999873
No 98
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.8e-17 Score=140.46 Aligned_cols=107 Identities=24% Similarity=0.447 Sum_probs=90.7
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC---CCcEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE---STQHLVVRIY 329 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~---~~~~L~i~v~ 329 (569)
...|.|.|+|++|++|...+..+.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.|+||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 4568999999999999999888999999999997432 3578899999999999999999986432 4568999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
|++..+++++||++.+++++. .......|++|
T Consensus 93 d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L 124 (125)
T cd04031 93 DYDRDGENDFLGEVVIDLADA-LLDDEPHWYPL 124 (125)
T ss_pred eCCCCCCCcEeeEEEEecccc-cccCCcceEEC
Confidence 999988999999999999983 23335689987
No 99
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.71 E-value=5.5e-17 Score=137.36 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=89.0
Q ss_pred EEEEEEEeeccccCCC-CCCCCcEEEEEEecCCCCeEEeeecCCCCCCee-ccEEEEEEecC--CCcEEEEEEEECCCCC
Q 008334 260 LEVKLVQAKGLTNKDL-IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIW-NEHFEFIVEDE--STQHLVVRIYDDEGIQ 335 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~--~~~~L~i~v~d~~~~~ 335 (569)
|.|+|++|++|+..+. .|.+||||+++++ .+++||++++++.||+| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 5799999999998874 6889999999997 47899999999999999 99999998754 3468999999999998
Q ss_pred CCcceEEEEEEccccCC---CceeEEEEEcc
Q 008334 336 SSELIGCAQVRLCELEP---GKVKDVWLKLV 363 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~~---~~~~~~~~~L~ 363 (569)
++++||++.+++.++.. +...+.|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999976 34578899985
No 100
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.5e-16 Score=138.34 Aligned_cols=115 Identities=32% Similarity=0.642 Sum_probs=96.4
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC----
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI---- 334 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~---- 334 (569)
.|+|+|++|++|+..|..|.+||||+++++ .+.++|++++++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG---KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC---CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999986 5678999999999999999999988644 45899999999852
Q ss_pred -------CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEE
Q 008334 335 -------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLEL 382 (569)
Q Consensus 335 -------~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l 382 (569)
+.+++||++.+++.++.. ..+.|+.|.+.. .....+|+|.+.+
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~---~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRT---DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccC--CCCeEEECccCC---CCCcEeEEEEEEC
Confidence 468999999999998753 356899997542 3446789998863
No 101
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=2.6e-16 Score=135.54 Aligned_cols=112 Identities=33% Similarity=0.589 Sum_probs=97.0
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d 522 (569)
|.|.|+|++|++|+..+..+.+||||++++++ ...+|++++++.||.|||+|.|.+.+. ...+.|+|||++..++ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~ 77 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPE 77 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCc
Confidence 67999999999999999889999999999965 567999999999999999999998753 5789999999988654 7
Q ss_pred eeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334 523 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 560 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (569)
+||++.+++.++..+ ...||+|... ..|+|++++++
T Consensus 78 ~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 78 FLGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999998644 3689999643 48999999886
No 102
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.71 E-value=2.7e-16 Score=136.83 Aligned_cols=116 Identities=33% Similarity=0.510 Sum_probs=98.7
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d 522 (569)
.|+|+|++|++|+..+..+.+||||++++++. ...++|++++++.||.|||+|.|.+.......|.|+|||++..++ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58899999999999988899999999998643 356899999999999999999999987656789999999998765 6
Q ss_pred eeEEEEEecceeeec---ceEeEEEEcCCCCCeEEEEEEEEee
Q 008334 523 YMGRCILTLTRVILE---GEYTDCFELDGTKSGKLKLHLKWMP 562 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~---~~~~~w~~L~~~~~G~i~l~~~~~p 562 (569)
+||++.++|.++... .....|++|.+ .|++++++.+.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEee
Confidence 999999999876443 24578999976 699999888753
No 103
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=8.3e-17 Score=142.86 Aligned_cols=103 Identities=39% Similarity=0.712 Sum_probs=90.5
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--------------------------CCeEEeeecCCCCCCee
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--------------------------EKTKKSKTINNDLNPIW 308 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--------------------------~~~~kT~~~~~t~nP~w 308 (569)
++.+.|.|+|++|++|.+.|..|.+||||++.+.+.. .+.++|++++++.||+|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 6789999999999999999999999999999996421 13578999999999999
Q ss_pred ccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEc
Q 008334 309 NEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKL 362 (569)
Q Consensus 309 ne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L 362 (569)
||+|.|.+.+...+.|.|+|||++ +++||++.++++++.. ...+.|++|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766779999999998 7899999999999984 446899876
No 104
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.7e-16 Score=137.86 Aligned_cols=105 Identities=32% Similarity=0.478 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEECCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDHDT 518 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~~~ 518 (569)
.+.|.|+|++|++|+..+..+.+||||++++.. +..+.+|++++++.||.|||+|.|.+.. .....|.++|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 477999999999999998889999999999842 2356899999999999999999997531 234679999999998
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
.++ ++||++.++++++........|+.|.
T Consensus 95 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 865 79999999999998777789999986
No 105
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=9.6e-17 Score=142.06 Aligned_cols=102 Identities=27% Similarity=0.421 Sum_probs=86.3
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEec---------------cCCC
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVE---------------DGLH 506 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~---------------~~~~ 506 (569)
.|.|+|++|++|+. .+|.+||||++++.+. ..+++|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999998 5689999999999752 24679999999999999999999995 1223
Q ss_pred CEEEEEEEECCCCCC-ceeEEEEEecceeeec-ceEeEEEEcCC
Q 008334 507 DMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYTDCFELDG 548 (569)
Q Consensus 507 ~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~~w~~L~~ 548 (569)
..|.|+|||++..++ ++||++.|++.++... .....||+|..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 579999999998755 7999999999998876 56789999964
No 106
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=2.9e-16 Score=138.10 Aligned_cols=118 Identities=25% Similarity=0.464 Sum_probs=97.0
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC---------CCCEEEEEEEE
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG---------LHDMLIAEVWD 515 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~---------~~~~l~i~V~d 515 (569)
+|+|+|++|++|+..+..|.+||||++++++ .+++|+++++|.||.|||.|.|.+... ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 6899999999999999999999999999975 678999999999999999999975321 12579999999
Q ss_pred CCCCCC-ceeEEEEE-ecceeeec---ceEeEEEEcCC--CCCeEEEEEEEEeecC
Q 008334 516 HDTFGK-DYMGRCIL-TLTRVILE---GEYTDCFELDG--TKSGKLKLHLKWMPQP 564 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i-~l~~l~~~---~~~~~w~~L~~--~~~G~i~l~~~~~p~~ 564 (569)
++..++ ++||++.+ ++..+... ....+||+|.. ...|+|.+++++.+..
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~~ 135 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEVT 135 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEeC
Confidence 998876 69999997 44444332 34579999973 4589999999998863
No 107
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.5e-16 Score=134.60 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=84.7
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d 337 (569)
|.|.|+|++|++|...+ ..||||++.++ +++.+|++.++ .||.|||+|.|.+.+... .|.|+|||++.. .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g---~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ---NVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC---CEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCc-CC
Confidence 68999999999997644 45899999997 67788998877 599999999999976544 599999999965 89
Q ss_pred cceEEEEEEccccCCCcee--EEEEEccccc
Q 008334 338 ELIGCAQVRLCELEPGKVK--DVWLKLVKDL 366 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~~~--~~~~~L~~~~ 366 (569)
++||++.++|.++..+... ..|++|.+..
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSEV 103 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChHH
Confidence 9999999999999755444 7999998544
No 108
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.70 E-value=1.1e-16 Score=139.07 Aligned_cols=115 Identities=27% Similarity=0.487 Sum_probs=97.3
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecCC----CcEEEEEEEECCC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEG 333 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~----~~~L~i~v~d~~~ 333 (569)
+|+|+|++|++|+..+..+.+||||++++++ .+.++|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 4789999999999998889999999999972 3678888874 6899999999999997663 5789999999998
Q ss_pred CCCCcceEEEEEEccccCCCce-----eEEEEEccccccccCCCcceeEEEE
Q 008334 334 IQSSELIGCAQVRLCELEPGKV-----KDVWLKLVKDLDVQRDTKYRGQVHL 380 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~G~l~l 380 (569)
.++|++||++.+++.++..+.. ...|++|.+ ..++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~-----~~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR-----PSGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC-----CCCCcCeEEeC
Confidence 8889999999999999976543 478999864 24778888864
No 109
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.70 E-value=3.9e-16 Score=135.25 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeEcCCCCC-CCCCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCC
Q 008334 443 RGVLSVTVILAENLPASD-LMGKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDT 518 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~ 518 (569)
.+.|.|+|++|++|+..+ ..+.+||||++++.. .....+|++++++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 478999999999999988 678899999999853 23567899999999999999999998643 34579999999988
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG 548 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (569)
.++ ++||++.++|+++........|++|+.
T Consensus 93 ~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 93 FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 765 799999999999988888899999863
No 110
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=8e-17 Score=140.66 Aligned_cols=91 Identities=30% Similarity=0.448 Sum_probs=77.9
Q ss_pred ceEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEE
Q 008334 443 RGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWD 515 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d 515 (569)
.+.|.|.|++|+||+..+. .+.+||||++++.... .+.||++++++.||+|||.|.|.+... .+..|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 4789999999999999873 3558999999996532 367999999999999999999999742 45689999999
Q ss_pred CCCCCC-ceeEEEEEecce
Q 008334 516 HDTFGK-DYMGRCILTLTR 533 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~ 533 (569)
++..++ ++||++.+++..
T Consensus 94 ~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCcCcceeceEEecCcC
Confidence 999876 799999999975
No 111
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.7e-16 Score=134.25 Aligned_cols=98 Identities=26% Similarity=0.396 Sum_probs=84.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 523 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 523 (569)
+.|.|+|++|++|+..+ ..||||++++++ .+.+|++.++ .||.|||.|.|.+.+. ...|.|+|||++..++|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~--~k~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN--VKSTTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC--EEeEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCCCc
Confidence 67999999999997643 468999999975 7789999877 5999999999999864 445999999999887899
Q ss_pred eEEEEEecceeeecceE--eEEEEcCC
Q 008334 524 MGRCILTLTRVILEGEY--TDCFELDG 548 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~--~~w~~L~~ 548 (569)
||++.|+|+++...... .+||+|..
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999999876544 89999974
No 112
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=6.8e-17 Score=141.25 Aligned_cols=103 Identities=25% Similarity=0.253 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|+||+..+..|.+||||++++.... .+.||++++++.||+|||+|.|.+.. ..+..|.|+|||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 36799999999999999888999999999995322 36789999999999999999999864 35678999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
..++ ++||++.|+... .+.+.++|..+.
T Consensus 94 ~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred CCCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 8766 799999998764 233345565543
No 113
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=3.3e-16 Score=134.01 Aligned_cols=113 Identities=35% Similarity=0.559 Sum_probs=97.6
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|+|+|++|++|+..+..+.+||||++++. +.+.++|+++.++.||+|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999996 2456899999999999999999999986666789999999999888999
Q ss_pred eEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEE
Q 008334 340 IGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVH 379 (569)
Q Consensus 340 iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~ 379 (569)
||++.+++.++..+...+.|++|.+ +++...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~-----~g~~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDG-----QGGGKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcC-----CCCccCceEE
Confidence 9999999999988888899999863 2444556554
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=1.7e-16 Score=143.40 Aligned_cols=109 Identities=21% Similarity=0.380 Sum_probs=94.7
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecC--CCCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPL--PEKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 329 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~ 329 (569)
.+.|.|.|+|++|+||+..+..+.+||||++++.+. +..++||++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 478999999999999999998899999999999643 2457899999999999999999998532 23457999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
|++.+++|++||++.+++.++......+.|+.+.
T Consensus 104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9999988999999999999998777778898874
No 115
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=7.5e-16 Score=134.15 Aligned_cols=111 Identities=28% Similarity=0.505 Sum_probs=97.1
Q ss_pred EEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCCC-ceeEE
Q 008334 450 VILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFGK-DYMGR 526 (569)
Q Consensus 450 v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~~-d~lG~ 526 (569)
|++|++|+. ..|.+||||++++++ .+++|++++++.||+|||.|.|.+... ....|.|+|||++..++ ++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEE
Confidence 689999998 578899999999975 578999999999999999999999754 46789999999998765 79999
Q ss_pred EEEecceeeecceEeEEEEcCCC----CCeEEEEEEEEeecC
Q 008334 527 CILTLTRVILEGEYTDCFELDGT----KSGKLKLHLKWMPQP 564 (569)
Q Consensus 527 ~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~~~~~p~~ 564 (569)
+.++++++..++....|++|.+. ..|+|++++.|.|.-
T Consensus 78 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 78 ATVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCC
Confidence 99999999988888999999632 368999999999853
No 116
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.68 E-value=9e-16 Score=135.91 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=96.5
Q ss_pred EEEEEEeec--cccCCCCCCCCcEEEEEEe-c-CCCCeEEeeecCCCCCCeeccEEEEEEecC--------CCcEEEEEE
Q 008334 261 EVKLVQAKG--LTNKDLIGKSDPYAVLFVR-P-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE--------STQHLVVRI 328 (569)
Q Consensus 261 ~V~v~~a~~--L~~~d~~g~~dpyv~v~~~-~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~--------~~~~L~i~v 328 (569)
.++|..|++ |+..+..+.+||||++++. + .+.++.||+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 345555555 7777777889999999973 2 345789999999999999999999998643 245799999
Q ss_pred EECCCC-CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 329 YDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 329 ~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
||++.+ ++|++||++.++|+.+..+.....|++|.. ......|.|++.+..-
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-----~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-----GRKATGGKLEVKVRLR 137 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-----CCCCcCCEEEEEEEec
Confidence 999986 579999999999999987766777999853 2446789999999874
No 117
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=4.2e-16 Score=134.76 Aligned_cols=110 Identities=26% Similarity=0.498 Sum_probs=94.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC---c
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK---D 522 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~---d 522 (569)
|+|+|++|++|+..+..+.+||||++++++ ...++|++++++.||.|||.|+|.+.. ...|.|+|||++..++ +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCc
Confidence 789999999999999889999999999964 467899999999999999999999974 6789999999988753 5
Q ss_pred eeEEEEEecceeeecce-EeEEEEcCCC-------CCeEEEEEE
Q 008334 523 YMGRCILTLTRVILEGE-YTDCFELDGT-------KSGKLKLHL 558 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~-~~~w~~L~~~-------~~G~i~l~~ 558 (569)
+||++.+++.++..... ...||+|... ..|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999999876553 4789999432 267887765
No 118
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=3.2e-16 Score=137.03 Aligned_cols=109 Identities=22% Similarity=0.304 Sum_probs=90.8
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
+.+..+.|.|+|++|+||+..+..|.+||||++++.+.+.+ ++||++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V 89 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV 89 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence 44567899999999999999998899999999999865443 56899999999999999999998643 566899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
||++..+++++||++.+.... .+...++|..+.
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml 122 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQML 122 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHH
Confidence 999999999999999987653 445556676654
No 119
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.68 E-value=2.7e-16 Score=136.34 Aligned_cols=104 Identities=39% Similarity=0.644 Sum_probs=92.5
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecC-CCCCCeeccEEEEEEecC---CCcEEEEEEEECCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTIN-NDLNPIWNEHFEFIVEDE---STQHLVVRIYDDEG 333 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~---~~~~L~i~v~d~~~ 333 (569)
|.|.|+|++|++|+..+..+.+||||+++++ .+.++|+++. ++.||+|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR---TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC---CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999986 5667888876 489999999999999866 35689999999999
Q ss_pred CCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
.++|++||++.+++.++..+...+.|+.|.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8889999999999999988777889999854
No 120
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=3e-16 Score=134.99 Aligned_cols=94 Identities=26% Similarity=0.420 Sum_probs=82.7
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-CCCcEEEEEEEECCC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-ESTQHLVVRIYDDEG 333 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~~~~L~i~v~d~~~ 333 (569)
+..|.|+|+|++|++|+. +..+.+||||+++++ +++++|++++++.||+|||+|.|.... ...+.|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~---~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFG---GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC---CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 678999999999999984 667889999999997 558999999999999999999997533 356799999999999
Q ss_pred CCCCcceEEEEEEccccCC
Q 008334 334 IQSSELIGCAQVRLCELEP 352 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~ 352 (569)
.++|++||++.+++.....
T Consensus 101 ~s~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 101 GWDDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCCCeeEEEEEEecCCce
Confidence 9999999999999986553
No 121
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.67 E-value=6.4e-16 Score=135.39 Aligned_cols=110 Identities=34% Similarity=0.565 Sum_probs=95.2
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCCC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDTF 519 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~~ 519 (569)
+.|+|+|++|++|+..+..+..||||++.+.+ ...+++|++++++.||.|||+|.|.+... ....|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 77999999999999988888999999999963 23578999999999999999999998754 356899999999887
Q ss_pred CC-ceeEEEEEecceeeecceEeEEEEcCCCCCeEE
Q 008334 520 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKSGKL 554 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i 554 (569)
++ ++||++.++++++... ....||+|.+.+.|+.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 65 6999999999999754 5689999998888864
No 122
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=2.4e-16 Score=133.66 Aligned_cols=102 Identities=32% Similarity=0.596 Sum_probs=87.0
Q ss_pred eEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeC-CCeeEeecccCCCCCCeeceEEEEEeccC---CCCEEEEEEEECCC
Q 008334 444 GVLSVTVILAENLPASDLM-GKADPYVVLTMKK-SETRNKTRVVNDCLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDT 518 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~-~~~~~~T~~~~~t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~~~ 518 (569)
|.|+|+|++|++|+..+.. +.+||||++++.. +...++|++++++.||+|||.|.|.+... ....|.++|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999853 23568999999999999999999988643 35689999999998
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDG 548 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (569)
.++ ++||++.+++.++... ..|++++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~---~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED---RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC---CCCCcccc
Confidence 865 7999999999999733 56777653
No 123
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=3.8e-16 Score=137.23 Aligned_cols=105 Identities=22% Similarity=0.385 Sum_probs=92.2
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEec-CCCCeEEeeecCCCCCCeeccEEEEEEecC---------------CCcE
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVEDE---------------STQH 323 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~---------------~~~~ 323 (569)
|+|+|++|++|... ..|.+||||+++++. ...+.++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 678999999999973 225678999999999999999999998765 4568
Q ss_pred EEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334 324 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 365 (569)
Q Consensus 324 L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 365 (569)
|.|+|||++..+++++||++.+++.++........|++|.+.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999988899999999999999877778999999764
No 124
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=8.1e-16 Score=133.75 Aligned_cols=109 Identities=34% Similarity=0.700 Sum_probs=92.4
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC-----
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF----- 519 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~----- 519 (569)
.|+|+|++|++|+..+..|.+||||++++++ ..++|++++++.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCccccc
Confidence 6899999999999999889999999999964 678999999999999999999998754 56899999999852
Q ss_pred -------CCceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEE
Q 008334 520 -------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL 558 (569)
Q Consensus 520 -------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 558 (569)
.+++||++.+++.++. +..+.||.|... .+|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 3479999999999874 445799999753 378888764
No 125
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=3.9e-16 Score=132.14 Aligned_cols=101 Identities=33% Similarity=0.576 Sum_probs=88.1
Q ss_pred EEEEEEEeEcCCCCC-CCCCCCcEEEEEEeCCCeeEeecccCCCCCCee-ceEEEEEeccC--CCCEEEEEEEECCCCCC
Q 008334 446 LSVTVILAENLPASD-LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVEDG--LHDMLIAEVWDHDTFGK 521 (569)
Q Consensus 446 L~v~v~~a~~L~~~~-~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~--~~~~l~i~V~d~~~~~~ 521 (569)
|.|+|++|++|+..+ ..|.+||||++++++ .+++|++++++.||.| ||.|.|.+... ....|.|+|||++..++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCC
Confidence 579999999999887 468899999999975 7889999999999999 99999999753 34689999999998876
Q ss_pred -ceeEEEEEecceeeec---ceEeEEEEcCC
Q 008334 522 -DYMGRCILTLTRVILE---GEYTDCFELDG 548 (569)
Q Consensus 522 -d~lG~~~i~l~~l~~~---~~~~~w~~L~~ 548 (569)
++||++.+++.++... .....||+|.+
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 6999999999999873 35689999864
No 126
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.2e-16 Score=139.43 Aligned_cols=110 Identities=21% Similarity=0.372 Sum_probs=90.5
Q ss_pred cccCccEEEEEEEEEeeccccCCC--CCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEE
Q 008334 252 LELKPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLV 325 (569)
Q Consensus 252 ~~~~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~ 325 (569)
.+.+..|.|.|+|++|+||...+. .+.+||||++++.+.+. .++||++++++.||+|||+|.|.+... ....|.
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE 88 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence 345677999999999999999883 35589999999986443 367899999999999999999998643 456799
Q ss_pred EEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 326 VRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 326 i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
|+|||++..+++++||++.+++.. .+...++|..+.
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999999999999999999999874 444556676654
No 127
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.1e-16 Score=133.87 Aligned_cols=103 Identities=25% Similarity=0.425 Sum_probs=91.0
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d 337 (569)
|.|+|+|++|++|+..+..+.+||||+++++ +...++|++++++.||+|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~--~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN--GIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC--CEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999996 23568899999999999999999988754 46899999999999899
Q ss_pred cceEEEEEEccccCCCceeEEEEEccc
Q 008334 338 ELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
++||++.+++.++..+ ..+.|+.+.+
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 5578888753
No 128
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=5.1e-16 Score=137.07 Aligned_cols=93 Identities=29% Similarity=0.587 Sum_probs=85.2
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 336 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~ 336 (569)
.|.|+|+|++|++|+..+. +.+||||+++++ .+.++|++++++.||+|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g---~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG---NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEEC---CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 4899999999999998887 889999999997 6789999999999999999999999876 6689999999999999
Q ss_pred CcceEEEEEEccccCCCc
Q 008334 337 SELIGCAQVRLCELEPGK 354 (569)
Q Consensus 337 d~~iG~~~i~l~~l~~~~ 354 (569)
|++||.+.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999986543
No 129
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=2.2e-15 Score=131.52 Aligned_cols=118 Identities=19% Similarity=0.376 Sum_probs=95.8
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----------CCeEEeeecCCCCCCee-ccEEEEEEecCCCcEEEEE
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----------EKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 327 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----------~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~ 327 (569)
+..|++++|+||+ ++..|++||||++++.+.+ .+.++|+++++++||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 3578999999998 7778999999999997533 34799999999999999 999999985 35689999
Q ss_pred EEECCCCCC---CcceEEEEEEccccCCCc---eeEEEEEccccccccCCCcceeEEEEEE
Q 008334 328 IYDDEGIQS---SELIGCAQVRLCELEPGK---VKDVWLKLVKDLDVQRDTKYRGQVHLEL 382 (569)
Q Consensus 328 v~d~~~~~~---d~~iG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~~~G~l~l~l 382 (569)
|||++..++ +++||++.+++.++..+. ....|++|.++. ..+..+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~---~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT---PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC---CCCcEEEEEEEEe
Confidence 999875433 799999999999996542 366789987653 2456789888765
No 130
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.67 E-value=4.1e-16 Score=138.41 Aligned_cols=102 Identities=38% Similarity=0.581 Sum_probs=89.4
Q ss_pred ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---------------------------eeEeecccCCCCCCee
Q 008334 441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---------------------------TRNKTRVVNDCLNPIW 493 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---------------------------~~~~T~~~~~t~nP~w 493 (569)
+..+.|.|+|++|++|+..+..|.+||||++++.... ..++|+++++|.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 5679999999999999999999999999999985321 2478999999999999
Q ss_pred ceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEc
Q 008334 494 NQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFEL 546 (569)
Q Consensus 494 ~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L 546 (569)
||+|.|.+.+.....|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999998766778999999998 6899999999999984 446999986
No 131
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.66 E-value=5.2e-16 Score=133.39 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=81.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCC-CCeeceEEEEEeccC-CCCEEEEEEEEC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCL-NPIWNQTFDFVVEDG-LHDMLIAEVWDH 516 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~-~~~~l~i~V~d~ 516 (569)
..+.|+|+|++|+||+..+..+.+||||++++-. ...++||+++++|. ||+|||+|.|.+... .+..+.|+|||+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~ 91 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR 91 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence 4588999999999999876667789999999853 22478999999995 699999999999753 234789999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEc
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFEL 546 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L 546 (569)
+..++ ++||++.++.++.. +.+.++|..+
T Consensus 92 ~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 92 SSVRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CCCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 88765 79999999997632 2223555443
No 132
>PLN03008 Phospholipase D delta
Probab=99.66 E-value=8.9e-16 Score=164.73 Aligned_cols=129 Identities=22% Similarity=0.521 Sum_probs=109.8
Q ss_pred cEEEEEEEEEeeccccCCC------------------------------------------CCCCCcEEEEEEecCCCCe
Q 008334 257 VGTLEVKLVQAKGLTNKDL------------------------------------------IGKSDPYAVLFVRPLPEKT 294 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~------------------------------------------~g~~dpyv~v~~~~~~~~~ 294 (569)
.|.|.++|.+|++|+++|. .+++||||+|.++ +.++
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg--~~rv 90 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP--QATL 90 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC--Ccce
Confidence 5899999999999885321 2467999999996 2456
Q ss_pred EEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcc
Q 008334 295 KKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKY 374 (569)
Q Consensus 295 ~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~ 374 (569)
.||++++++.||+|||+|.|.+.+.. ..|.|+|||+|.++ +++||++.+|+.++..+...+.|++|.+... ++.+.
T Consensus 91 ~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--kp~k~ 166 (868)
T PLN03008 91 ARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG--KPPKA 166 (868)
T ss_pred eeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC--CCCCC
Confidence 79999999999999999999998764 48999999999996 5899999999999999999999999987653 45567
Q ss_pred eeEEEEEEEEEecCCCC
Q 008334 375 RGQVHLELLYCPFGMEN 391 (569)
Q Consensus 375 ~G~l~l~l~~~p~~~~~ 391 (569)
.|.|+++++|.|+....
T Consensus 167 ~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 167 ETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CcEEEEEEEEEEccccc
Confidence 89999999999987643
No 133
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=8.2e-16 Score=130.48 Aligned_cols=98 Identities=22% Similarity=0.396 Sum_probs=85.2
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC----CcEEEEEEEECCCC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGI 334 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~v~d~~~~ 334 (569)
.|+|+|++|++|. .|.+||||+++++ +++++|++++++.||.|||+|.|.+..+. ...|.|+|||++..
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 5889999999998 4789999999998 56789999999999999999999986432 45899999999998
Q ss_pred CCCcceEEEEEEccccCCC---ceeEEEEEcc
Q 008334 335 QSSELIGCAQVRLCELEPG---KVKDVWLKLV 363 (569)
Q Consensus 335 ~~d~~iG~~~i~l~~l~~~---~~~~~~~~L~ 363 (569)
++|++||++.++++++..+ .....|++|.
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 8899999999999999665 3457899885
No 134
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=6.3e-16 Score=137.08 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=85.6
Q ss_pred EEEEEEEEeeccccCCCCC--------------CCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecC-CCcE
Q 008334 259 TLEVKLVQAKGLTNKDLIG--------------KSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-STQH 323 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g--------------~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~ 323 (569)
.|.|+|++|++|+.+|..+ .+||||++.++ +++.+|++++++.||+|||+|.|.+..+ ..+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~---g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA---GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC---CEeeecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999987543 68999999997 5667999999999999999999997644 3568
Q ss_pred EEEEEEECCCCCCCcceEEEEEEccccCCCce-------eEEEEEcc
Q 008334 324 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKV-------KDVWLKLV 363 (569)
Q Consensus 324 L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~-------~~~~~~L~ 363 (569)
|.|+|||++..++|++||.+.+++.++..... ...|+.+.
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 99999999999899999999999999866442 24666664
No 135
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=8.3e-16 Score=129.09 Aligned_cols=93 Identities=24% Similarity=0.378 Sum_probs=79.9
Q ss_pred eEEEEEEEEeEcCCCCCCC----CCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334 444 GVLSVTVILAENLPASDLM----GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 518 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~----g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~ 518 (569)
|.|.|+|++|++|+..+.. +.+||||++++++ .++||++++++.||+|||.|.|.+.+. ....|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC
Confidence 6899999999999987632 3589999999964 678999999999999999999998754 33579999999998
Q ss_pred CCC-ceeEEEEEecceeeecc
Q 008334 519 FGK-DYMGRCILTLTRVILEG 538 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~ 538 (569)
.++ ++||++.++|+++..+.
T Consensus 79 ~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 FSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCcceEEEEEEHHHHHhhC
Confidence 866 79999999999987654
No 136
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=8.6e-16 Score=136.19 Aligned_cols=107 Identities=25% Similarity=0.396 Sum_probs=90.1
Q ss_pred EEEEEEEeEcCCCCCCC--------------CCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEE
Q 008334 446 LSVTVILAENLPASDLM--------------GKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLI 510 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~--------------g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~ 510 (569)
|.|+|++|++|+.++.. +.+||||++.+++ .+.+|++++++.||+|||+|.|.+..+ ..+.|.
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 78999999999998744 3689999999976 567999999999999999999997543 356899
Q ss_pred EEEEECCCCCC-ceeEEEEEecceeeecce-------EeEEEEcCCCCCeEE
Q 008334 511 AEVWDHDTFGK-DYMGRCILTLTRVILEGE-------YTDCFELDGTKSGKL 554 (569)
Q Consensus 511 i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~i 554 (569)
|+|||++..++ ++||++.+++.++...+. ...|+.|.+.+.+..
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~~ 131 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREYS 131 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccccc
Confidence 99999998854 799999999999877653 269999988766544
No 137
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.65 E-value=3e-16 Score=137.90 Aligned_cols=110 Identities=25% Similarity=0.427 Sum_probs=92.9
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
+....|.|.|+|++|++|++.+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 335679999999999999999988999999999997532 3468999999999999999999998643 356899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
||++..+++++||++.+++.. .+...+.|+.+.+
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999998889999999999985 3445678887754
No 138
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=6.4e-16 Score=136.24 Aligned_cols=105 Identities=29% Similarity=0.381 Sum_probs=87.4
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|++|+..+..|.+||||++++.... .+.+|++++++.||.|||+|.|.+... ....|.|+|||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 47799999999999999988999999999985422 367899999999999999999998632 3457899999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
..++ ++||++.+++.. ......+|+.|...
T Consensus 94 ~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 8865 799999999998 34455788887543
No 139
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.65 E-value=3.7e-15 Score=132.03 Aligned_cols=116 Identities=21% Similarity=0.354 Sum_probs=93.8
Q ss_pred EEEEEEeEc--CCCCCCCCCCCcEEEEEEe---CCCeeEeecccCCCCCCeeceEEEEEeccCC--------CCEEEEEE
Q 008334 447 SVTVILAEN--LPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--------HDMLIAEV 513 (569)
Q Consensus 447 ~v~v~~a~~--L~~~~~~g~~dpyv~v~l~---~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~--------~~~l~i~V 513 (569)
.++|..|++ |+..+..+.+||||++++. ....+.||+++++|+||+|||.|.|.+.... ...|.++|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 445555555 7777778889999999972 2346899999999999999999999996431 35799999
Q ss_pred EECCCC--CCceeEEEEEecceeeecceEeEEEEcC-CC--CCeEEEEEEEEee
Q 008334 514 WDHDTF--GKDYMGRCILTLTRVILEGEYTDCFELD-GT--KSGKLKLHLKWMP 562 (569)
Q Consensus 514 ~d~~~~--~~d~lG~~~i~l~~l~~~~~~~~w~~L~-~~--~~G~i~l~~~~~p 562 (569)
||++.+ ++++||++.++|+.+..+.....|++|. +. -+|+|++++..+.
T Consensus 85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 999986 3579999999999998777778899975 43 3799999998765
No 140
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=2.3e-15 Score=130.52 Aligned_cols=106 Identities=34% Similarity=0.580 Sum_probs=92.7
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCC-CCCCeeceEEEEEeccC---CCCEEEEEEEECCCC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVND-CLNPIWNQTFDFVVEDG---LHDMLIAEVWDHDTF 519 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~-t~nP~w~e~f~f~v~~~---~~~~l~i~V~d~~~~ 519 (569)
|.|.|+|++|++|+..+..+.+||||++++++ ..++|++.++ +.||.|||.|.|.+..+ ....|.|+|||++..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC
Confidence 57999999999999988888999999999965 5678888774 89999999999999875 356899999999887
Q ss_pred CC-ceeEEEEEecceeeecceEeEEEEcCCCCC
Q 008334 520 GK-DYMGRCILTLTRVILEGEYTDCFELDGTKS 551 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~ 551 (569)
+. ++||++.+++.++..++..+.|+.|.....
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~ 111 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAKY 111 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCCCcCceEeeccce
Confidence 65 799999999999998888899999988653
No 141
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=5.1e-16 Score=136.84 Aligned_cols=107 Identities=23% Similarity=0.379 Sum_probs=90.5
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 330 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d 330 (569)
...+.|.|+|++|++|+..|..|.+||||++++.+.+. .+++|++++++.||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 45789999999999999999889999999999974332 357899999999999999999998642 34578999999
Q ss_pred CCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
++..+++++||++.+++.. .+.....|+.+.
T Consensus 92 ~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 92 SDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred CCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 9999999999999999988 345567788774
No 142
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=2.3e-15 Score=132.25 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=90.7
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVR 327 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~ 327 (569)
+....|.|.|+|++|+||+..+..|.+||||++++.+..+ .++||++++++.||+|||+|.|.+.. .....|.|.
T Consensus 10 Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 10 YNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred EcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 4467899999999999999999889999999999986433 25789999999999999999999874 355689999
Q ss_pred EEECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 328 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 328 v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
|||++..+++++||++.+++..... ...++|..+.
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 9999999999999999998864322 2235676654
No 143
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=2e-15 Score=132.37 Aligned_cols=98 Identities=27% Similarity=0.380 Sum_probs=86.0
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecC----CCcEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVV 326 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i 326 (569)
...+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 4568899999999999998888999999999997432 3578999999999999999999998653 3458999
Q ss_pred EEEECCCCCCCcceEEEEEEccccCC
Q 008334 327 RIYDDEGIQSSELIGCAQVRLCELEP 352 (569)
Q Consensus 327 ~v~d~~~~~~d~~iG~~~i~l~~l~~ 352 (569)
+|||++..++|++||++.++|+++..
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999889999999999999864
No 144
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=7.4e-16 Score=135.87 Aligned_cols=104 Identities=28% Similarity=0.400 Sum_probs=85.0
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||.|.|.+.. .....|.|+|||++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 4789999999999999888899999999998421 236789999999999999999999863 23568999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG 548 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (569)
..++ ++||++.+++.+. +....+|+.+-.
T Consensus 94 ~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 8875 7999999999875 333456665543
No 145
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=8.5e-16 Score=135.22 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=83.6
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|+||+..+ .+.+||||++++.... .+++|++++++.||+|||.|.|.+.. .....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 477999999999999888 7889999999986432 36689999999999999999999963 24468999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
..++ ++||++.|+......+.+.++|..+-
T Consensus 93 ~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 8765 69999999976544444445565543
No 146
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=1.7e-15 Score=128.36 Aligned_cols=101 Identities=25% Similarity=0.482 Sum_probs=86.6
Q ss_pred CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCC-C
Q 008334 275 LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-G 353 (569)
Q Consensus 275 ~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~-~ 353 (569)
..|.+||||+++++ +...++|++++++.||+|||+|.|.+.+...+.|.|+|||++.. +|++||++.++|.++.. +
T Consensus 9 ~~G~~dPYv~v~v~--~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLN--GKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEEC--CEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999997 23467999999999999999999999877677899999999998 89999999999999854 3
Q ss_pred ceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 354 KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 354 ~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
...+.|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC--------CCCCEEEEEEEEec
Confidence 44679999852 45799999999987
No 147
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=3.9e-15 Score=130.59 Aligned_cols=95 Identities=28% Similarity=0.432 Sum_probs=82.5
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-----CeeEeecccCCCCCCeeceEEEEEeccC----CCCEEEEEE
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-----ETRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEV 513 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-----~~~~~T~~~~~t~nP~w~e~f~f~v~~~----~~~~l~i~V 513 (569)
.+.|+|+|++|++|+..+..|.+||||++++.+. ..+++|+++++|.||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 3679999999999999888899999999999642 3478999999999999999999998742 356899999
Q ss_pred EECCCCCC-ceeEEEEEecceeeec
Q 008334 514 WDHDTFGK-DYMGRCILTLTRVILE 537 (569)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~ 537 (569)
||++..++ ++||++.++|+++..-
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99998875 7999999999998643
No 148
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.1e-16 Score=151.87 Aligned_cols=229 Identities=28% Similarity=0.379 Sum_probs=169.6
Q ss_pred ccccccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEE--EEecC-CCcE
Q 008334 249 YSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEF--IVEDE-STQH 323 (569)
Q Consensus 249 ~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f--~v~~~-~~~~ 323 (569)
+..++......+..++.+|++|+.++..+..|||++..+.+.-. .+.+|++..+++||.|+|+-.. ...+. ....
T Consensus 84 ~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~ 163 (362)
T KOG1013|consen 84 FELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKV 163 (362)
T ss_pred hhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhh
Confidence 33445556678899999999999999999999999999985322 3578889999999999986433 33322 2346
Q ss_pred EEEEEEECCCCCCCcceEEEEEEccccCCCceeE--EEEEccccc-cccC-CCcceeEEEEEEEEEecCCCCCcCCCCCC
Q 008334 324 LVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD--VWLKLVKDL-DVQR-DTKYRGQVHLELLYCPFGMENVFTNPFAP 399 (569)
Q Consensus 324 L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~--~~~~L~~~~-~~~~-~~~~~G~l~l~l~~~p~~~~~~~~~~~~~ 399 (569)
+++.|.|.+.+...+++|+..+++..+.+.+... .|+.-.-+. .... ....+|.+.+++.|-
T Consensus 164 ~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~-------------- 229 (362)
T KOG1013|consen 164 LRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS-------------- 229 (362)
T ss_pred hheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------
Confidence 7889999999988999999999999887654322 222211110 0011 124556666665552
Q ss_pred CCChhhHHHHhhcCcccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---
Q 008334 400 NFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS--- 476 (569)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~--- 476 (569)
....-+.+++.+|.+|..+|.+|.+||||..++...
T Consensus 230 -----------------------------------------s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~ 268 (362)
T KOG1013|consen 230 -----------------------------------------STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGK 268 (362)
T ss_pred -----------------------------------------cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcch
Confidence 234668899999999999999999999999998532
Q ss_pred CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECCCC-CCceeEEEEEecc
Q 008334 477 ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDTF-GKDYMGRCILTLT 532 (569)
Q Consensus 477 ~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~~~-~~d~lG~~~i~l~ 532 (569)
.-+++|.+.++|.+|+||+.|.|.+.. .....+.|.|||++.- +.|++|-+...+.
T Consensus 269 ~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 269 KFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred hhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 236899999999999999999999874 3556899999999887 3488887665544
No 149
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=1.1e-15 Score=131.33 Aligned_cols=112 Identities=10% Similarity=0.211 Sum_probs=89.0
Q ss_pred ccccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCC-CCeeccEEEEEEecCC-CcEEEE
Q 008334 251 ELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDL-NPIWNEHFEFIVEDES-TQHLVV 326 (569)
Q Consensus 251 ~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~-nP~wne~f~f~v~~~~-~~~L~i 326 (569)
..+.+..|+|+|+|++|+||++.+..+.+||||++++...+++ ++||+++++|. ||+|||+|.|.+.... .-.|.+
T Consensus 7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 3466788999999999999998755566799999999754443 68899999985 6999999999997542 347889
Q ss_pred EEEECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 327 RIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 327 ~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
+|||++..+++++||++.+..+.. .+...++|....
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~ 122 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI 122 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence 999999988999999999998763 223346776543
No 150
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=9.7e-16 Score=135.12 Aligned_cols=106 Identities=30% Similarity=0.471 Sum_probs=86.1
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 516 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~ 516 (569)
..+.|.|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||.|.|.+... ....|.|+|||+
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 34789999999999999998899999999999532 2467899999999999999999998642 235799999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
+..++ ++||++.+++... +.+..+|+.+-..
T Consensus 93 ~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 98876 7999999999763 3344666665443
No 151
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.3e-15 Score=131.72 Aligned_cols=93 Identities=28% Similarity=0.380 Sum_probs=81.3
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
+|+|+|++|++|++.+..|.+||||+++++.. ....+|++++++.||+|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~-~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK-KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe-eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 37899999999999998899999999999732 23467888889999999999999987666779999999999998999
Q ss_pred ceEEEEEEccccCC
Q 008334 339 LIGCAQVRLCELEP 352 (569)
Q Consensus 339 ~iG~~~i~l~~l~~ 352 (569)
+||++.+++++...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999987653
No 152
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=4e-15 Score=131.19 Aligned_cols=109 Identities=30% Similarity=0.454 Sum_probs=90.3
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
+.+..|.|.|+|++|++|+..+..|.+||||++++.+.+. ..++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 4467799999999999999999889999999999974322 467899999999999999999998643 234799999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
||++.+++|++||++.+++... +...+.|.++.
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred EeCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 9999999999999999999763 34445676664
No 153
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.62 E-value=6e-15 Score=130.26 Aligned_cols=90 Identities=40% Similarity=0.677 Sum_probs=81.9
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d 522 (569)
|.|+|+|++|++|+..+. +.+||||++++++ .+.+|++++++.||+|||.|.|.+.++ ...|.|+|||++.+++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 789999999999998887 8899999999975 788999999999999999999999876 6789999999998876 7
Q ss_pred eeEEEEEecceeeec
Q 008334 523 YMGRCILTLTRVILE 537 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~ 537 (569)
+||++.+++.++...
T Consensus 78 ~iG~a~i~l~~l~~~ 92 (145)
T cd04038 78 SMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEEHHHhhhh
Confidence 999999999987654
No 154
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.62 E-value=6.3e-16 Score=135.94 Aligned_cols=109 Identities=29% Similarity=0.480 Sum_probs=90.1
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
+....|.|+|+|++|++|++.+..|.+||||++++.+.+ ...++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 345679999999999999999989999999999997433 2467899899999999999999987543 334699999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
||++..+++++||++.+++. ..+...+.|+.+.
T Consensus 89 ~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~ 121 (134)
T cd08403 89 VDYDRVGHNELIGVCRVGPN--ADGQGREHWNEML 121 (134)
T ss_pred EECCCCCCCceeEEEEECCC--CCCchHHHHHHHH
Confidence 99999999999999999987 3344456777664
No 155
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=5.3e-15 Score=127.00 Aligned_cols=108 Identities=23% Similarity=0.424 Sum_probs=93.4
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d 522 (569)
|.|+|+|++|++|+..+..+.+||||++++++ ..+++|++++++.||.|||.|.|.+... .+.|.|+|||++..++ +
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCC
Confidence 67999999999999998889999999999964 3678999999999999999999998764 4689999999998876 6
Q ss_pred eeEEEEEecceeeecceEeEEEEcCCCCCeEE
Q 008334 523 YMGRCILTLTRVILEGEYTDCFELDGTKSGKL 554 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i 554 (569)
+||++.+++.++..+ ....||.|-+...+++
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL 109 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence 999999999999876 5588888876655554
No 156
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=2.7e-15 Score=132.30 Aligned_cols=109 Identities=24% Similarity=0.418 Sum_probs=90.3
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
+.+..|.|.|+|++|+||...+..|.+||||++++.+.+ ..+++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 335679999999999999998888999999999986432 2467899999999999999999987532 345899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
||++..+++++||++.+++.+. +...+.|..+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 9999998999999999999875 44455676654
No 157
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=6.4e-15 Score=129.44 Aligned_cols=105 Identities=23% Similarity=0.398 Sum_probs=83.3
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|++|+..+..|.+||||++++..+ ..+++|+++++|.||+|||+|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 4789999999999999998899999999998432 2457899999999999999999998532 3457999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcCC
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDG 548 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~ 548 (569)
..++ ++||++.|+....-. ...++|+.|..
T Consensus 93 ~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred CCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 8765 799999877644321 23466766543
No 158
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.62 E-value=8.6e-15 Score=126.80 Aligned_cols=117 Identities=24% Similarity=0.420 Sum_probs=93.4
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCc
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSE 338 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~ 338 (569)
.|.|+|++|+ |...+..+.+||||+++++. ...++|++++++.||+|||+|.|.+. ..+.|.|+|||++..+.|+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~--~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDG--QPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTLKADV 77 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECC--cccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCCCCCc
Confidence 6899999998 55555578899999999972 24789999999999999999999985 3568999999999998999
Q ss_pred ceEEEEEEccccCCCc---e--eEEEEEccccccccCCCcceeEEEEEE
Q 008334 339 LIGCAQVRLCELEPGK---V--KDVWLKLVKDLDVQRDTKYRGQVHLEL 382 (569)
Q Consensus 339 ~iG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~~~~~~~~G~l~l~l 382 (569)
+||++.+++.++.... . ...|+++.+.. ...++..|++.+++
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSEN--KGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccC--CCcceeeeeEEEEe
Confidence 9999999999986432 2 23578876432 11447789998875
No 159
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.62 E-value=1.5e-15 Score=133.70 Aligned_cols=108 Identities=31% Similarity=0.461 Sum_probs=90.8
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCC--CCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~--~~~l~i~V~d~~ 517 (569)
.+.|.|+|++|++|+..+..+.+||||++++.... .+++|++++++.||.|||+|.|.+.... ...|.|+|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 47899999999999998888899999999996532 3679999999999999999999987542 578999999998
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG 552 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G 552 (569)
..+. ++||++.+++++ .+...++|++|...+..
T Consensus 93 ~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~ 126 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRK 126 (134)
T ss_pred CCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCC
Confidence 8655 799999999999 45556899998766433
No 160
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=6.6e-15 Score=125.90 Aligned_cols=103 Identities=38% Similarity=0.625 Sum_probs=91.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 524 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 524 (569)
|+|+|++|++|+..+..+.+||||++++++ ...++|+++.++.||.|||+|.|.+.......+.|+|||++..+. ++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 578999999999988888999999999964 456899999999999999999999986667889999999998765 699
Q ss_pred EEEEEecceeeecceEeEEEEcCCC
Q 008334 525 GRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 525 G~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
|++.+++.++..+.....|++|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~ 104 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQ 104 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCC
Confidence 9999999999887788999999754
No 161
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=3.2e-15 Score=129.84 Aligned_cols=110 Identities=25% Similarity=0.397 Sum_probs=93.0
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccC-CCCCCeeceEEEEEeccCC----CCEEEEEEEECCCCC
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVN-DCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDTFG 520 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~-~t~nP~w~e~f~f~v~~~~----~~~l~i~V~d~~~~~ 520 (569)
|+|+|++|++|+..+..+.+||||++++++ ..+++|++.. ++.||.|||.|.|.+.... ...|.++|||++..+
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 789999999999988889999999999975 4567888875 5899999999999998653 678999999998865
Q ss_pred C-ceeEEEEEecceeeecce-----EeEEEEcCC---CCCeEEEE
Q 008334 521 K-DYMGRCILTLTRVILEGE-----YTDCFELDG---TKSGKLKL 556 (569)
Q Consensus 521 ~-d~lG~~~i~l~~l~~~~~-----~~~w~~L~~---~~~G~i~l 556 (569)
. ++||++.+++.++..+.. ...||+|.+ +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 4 799999999999987654 368999963 46788764
No 162
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=4.7e-15 Score=125.82 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=86.0
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC----CCEEEEEEEECCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL----HDMLIAEVWDHDT 518 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~----~~~l~i~V~d~~~ 518 (569)
...|+|+|++|++|+ .|.+||||++++++ ++++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 378999999999998 57899999999985 6778999999999999999999986432 4689999999998
Q ss_pred CCC-ceeEEEEEecceeeecc---eEeEEEEcCC
Q 008334 519 FGK-DYMGRCILTLTRVILEG---EYTDCFELDG 548 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~---~~~~w~~L~~ 548 (569)
.++ ++||++.++|+++..+. -...|++|.+
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 765 79999999999997663 3589999864
No 163
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=1.1e-14 Score=127.65 Aligned_cols=124 Identities=18% Similarity=0.335 Sum_probs=99.7
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI 334 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~ 334 (569)
+....|.|.|++|++|+.++ +|||.+.++ +....||+++.++.||.|+|+|.|..... -..+.|.||+.+..
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld--~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~ 79 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLD--KTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEEC--CEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCc
Confidence 45678999999999998764 799999998 24457999999999999999999976543 35799999865432
Q ss_pred ----CCCcceEEEEEEccccCCCceeEEEEEcccccccc-----CCCcceeEEEEEEEEEe
Q 008334 335 ----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQ-----RDTKYRGQVHLELLYCP 386 (569)
Q Consensus 335 ----~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-----~~~~~~G~l~l~l~~~p 386 (569)
.++++||.+.|++.++..+...+.|++|....... ...+..+.|++.++|.+
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 15799999999999999999999999998643211 01245689999999986
No 164
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.61 E-value=1.7e-15 Score=177.24 Aligned_cols=118 Identities=27% Similarity=0.578 Sum_probs=106.7
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC-CCEEEEEEEECCCCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL-HDMLIAEVWDHDTFG 520 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~-~~~l~i~V~d~~~~~ 520 (569)
..|.|+|+|++|.||. +..|.+||||++.+++ ..+.||++++++.||+|||.|+|.+.++. ++.|+|+|||+|.++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 4689999999999998 4468999999999985 34669999999999999999999998874 467999999999998
Q ss_pred CceeEEEEEecceeeecceEeEEEEcCC--CCCeE---EEEEEEEee
Q 008334 521 KDYMGRCILTLTRVILEGEYTDCFELDG--TKSGK---LKLHLKWMP 562 (569)
Q Consensus 521 ~d~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~~~~~p 562 (569)
+|.+|.++|++.++..++.+++||+|.+ ++.|+ |+++++|.+
T Consensus 2055 kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 8999999999999999999999999986 67898 999999986
No 165
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.61 E-value=2.2e-15 Score=132.37 Aligned_cols=106 Identities=29% Similarity=0.426 Sum_probs=88.2
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEEC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDH 516 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~ 516 (569)
..+.|.|+|++|++|+..+..|.+||||++++.+. ..+++|++++++.||.|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 45889999999999999998899999999999642 2467999999999999999999998743 346899999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
+..++ ++||++.+++.. .+....+||.+...
T Consensus 91 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred CCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 88765 799999999986 33445788877443
No 166
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=6.6e-15 Score=129.36 Aligned_cols=111 Identities=27% Similarity=0.465 Sum_probs=88.0
Q ss_pred ccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEE
Q 008334 253 ELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRI 328 (569)
Q Consensus 253 ~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v 328 (569)
+.+..|.|.|+|++|++|+..|..|.+||||++++.+.. .++++|++++++.||+|||+|.|.+... ....|.|+|
T Consensus 9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V 88 (135)
T cd08410 9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV 88 (135)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence 335679999999999999999988999999999986422 2457899999999999999999998533 334799999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
||++..+++++||++.+....... ...++|..+..
T Consensus 89 ~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 89 YGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999999999999998866533322 22466776653
No 167
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.60 E-value=1.2e-14 Score=127.30 Aligned_cols=117 Identities=14% Similarity=0.249 Sum_probs=96.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC-C-
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT-F- 519 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~-~- 519 (569)
....|.|.|.+|++|+.++ +|||.+.+++ ....||+++.++.||.|+|.|.|.+..+ -..+.|.||+.+. .
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~-~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDK-TLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECC-EEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCccc
Confidence 4467999999999998864 7999999986 4567999999999999999999987643 4679999976542 2
Q ss_pred ---CCceeEEEEEecceeeecceEeEEEEcCCC-------------CCeEEEEEEEEeecCC
Q 008334 520 ---GKDYMGRCILTLTRVILEGEYTDCFELDGT-------------KSGKLKLHLKWMPQPI 565 (569)
Q Consensus 520 ---~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-------------~~G~i~l~~~~~p~~~ 565 (569)
++++||.+.|+++++..+...+.||+|.+. +.+.|+++++|.+.-.
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~ 143 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV 143 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence 236999999999999987788999999532 2379999999998754
No 168
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.60 E-value=6.4e-15 Score=126.86 Aligned_cols=100 Identities=26% Similarity=0.436 Sum_probs=86.5
Q ss_pred EEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC----CC
Q 008334 264 LVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG----IQ 335 (569)
Q Consensus 264 v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~----~~ 335 (569)
.++|++|++.+..|.+||||++++.+.. ...++|++++++.||+|||+|.|.+.....+.|.|+|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3789999999988999999999998432 125899999999999999999998765556689999999997 78
Q ss_pred CCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 336 SSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
++++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 8999999999999998877777888873
No 169
>PLN03008 Phospholipase D delta
Probab=99.60 E-value=7.3e-15 Score=157.77 Aligned_cols=124 Identities=23% Similarity=0.487 Sum_probs=105.9
Q ss_pred ccceEEEEEEEEeEcCCCCCC------------------------------------------CCCCCcEEEEEEeCCCe
Q 008334 441 IIRGVLSVTVILAENLPASDL------------------------------------------MGKADPYVVLTMKKSET 478 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~------------------------------------------~g~~dpyv~v~l~~~~~ 478 (569)
.--|.|.++|.+|++|+.+|. .+++||||+|.+++ .+
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~-~r 89 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ-AT 89 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC-cc
Confidence 456889999999999885221 23679999999964 55
Q ss_pred eEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEcCCC------CCe
Q 008334 479 RNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSG 552 (569)
Q Consensus 479 ~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G 552 (569)
+.||++++++.||+|||+|.|.|.++ ...|.|+|||++.+++++||++.||+.++..+...+.|++|.+. +.|
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~ 168 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAET 168 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCc
Confidence 77999999999999999999999985 45899999999999989999999999999988888999999542 468
Q ss_pred EEEEEEEEeecCCC
Q 008334 553 KLKLHLKWMPQPIY 566 (569)
Q Consensus 553 ~i~l~~~~~p~~~~ 566 (569)
+|+++++|+|...-
T Consensus 169 kl~v~lqf~pv~~~ 182 (868)
T PLN03008 169 AIFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEEEEcccc
Confidence 99999999997543
No 170
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=5.7e-15 Score=129.80 Aligned_cols=103 Identities=24% Similarity=0.421 Sum_probs=89.9
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC--CeeEeecccCCCCCCeeceEEEEEeccC---------------CCCE
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKS--ETRNKTRVVNDCLNPIWNQTFDFVVEDG---------------LHDM 508 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~--~~~~~T~~~~~t~nP~w~e~f~f~v~~~---------------~~~~ 508 (569)
|+|.|++|++|+.. ..|.+||||+++++.. ..+++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 7889999999999732 4678999999999999999999998764 4568
Q ss_pred EEEEEEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 509 LIAEVWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 509 l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
|.|+|||++..++ ++||++.+++.++...+....||+|...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 9999999998754 7999999999999877777999999765
No 171
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.7e-14 Score=124.90 Aligned_cols=101 Identities=29% Similarity=0.400 Sum_probs=83.2
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEecc---CCCCEEEEEEEEC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVED---GLHDMLIAEVWDH 516 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~---~~~~~l~i~V~d~ 516 (569)
.+.|+|+|++|++|+..+..+.+||||++++... ..+++|++++++.||.|||.|.|.... .....+.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 4779999999999999888889999999998532 247899999999999999999996322 2356899999999
Q ss_pred CCCCCceeEEEEEecceeeecceEeEE
Q 008334 517 DTFGKDYMGRCILTLTRVILEGEYTDC 543 (569)
Q Consensus 517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w 543 (569)
+..++++||++.++++++..++...-|
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 94 DRFGNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred CCcCCeeEEEEEEEcccCCCCcceEee
Confidence 887557999999999999766544433
No 172
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=7.9e-15 Score=128.48 Aligned_cols=106 Identities=34% Similarity=0.570 Sum_probs=92.6
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDEGI 334 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~~~ 334 (569)
|.|+|+|++|++|+..+..+.+||||.+.+.+.+ ...++|++++++.||.|||+|.|.+... ..+.|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 8899999999999998888899999999997422 3678999999999999999999998654 346899999999988
Q ss_pred CCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 335 QSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 335 ~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
+++++||++.+++.++... ..+.|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8899999999999999754 6788999964
No 173
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=2.4e-15 Score=132.35 Aligned_cols=109 Identities=24% Similarity=0.401 Sum_probs=91.0
Q ss_pred cCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEEE
Q 008334 254 LKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIY 329 (569)
Q Consensus 254 ~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v~ 329 (569)
.+..+.|.|+|++|+||...+ .+.+||||++++.+.+. .+++|++++++.||+|||+|.|.+.. .....|.|+||
T Consensus 11 ~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 11 NPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 356789999999999999888 78899999999986433 36789999999999999999999863 34468999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
|++..+++++||++.++......+...++|..+.
T Consensus 90 ~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 90 QSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred eCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 9999889999999999876555566566777664
No 174
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=4.1e-15 Score=128.61 Aligned_cols=118 Identities=24% Similarity=0.407 Sum_probs=91.7
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
.|+|+|++|++|+..+..|.+||||++++++.....+|.+++++.||+|||+|.|.+..+..+.|.|+|||++..++ ++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 37899999999999998899999999999764445678888899999999999999876677899999999998865 79
Q ss_pred eEEEEEecceeeecceEeEEEEcCC--CCCeEEEEEEEEeec
Q 008334 524 MGRCILTLTRVILEGEYTDCFELDG--TKSGKLKLHLKWMPQ 563 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~~~~~p~ 563 (569)
||++.+++.+....+ ..+++-+.. ...|.++..-.+.|.
T Consensus 81 iG~~~i~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 81 IGETVIDLEDRFFSK-HRATCGLPPTYEESGPNQWRDSLKPS 121 (124)
T ss_pred eEEEEEeecccccch-HHHhccCCCcccccCceecCcccCcc
Confidence 999999999876421 122222221 245666665555543
No 175
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=1.1e-14 Score=125.99 Aligned_cols=106 Identities=25% Similarity=0.420 Sum_probs=89.3
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEec---CCCcEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVED---ESTQHLVVRIY 329 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~---~~~~~L~i~v~ 329 (569)
...+.|+|+|++|++|++.+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.... .....+.|+||
T Consensus 12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 4568899999999999998888899999999986432 357899999999999999999986322 23568999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEE
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLK 361 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~ 361 (569)
|++.. .+++||++.++++++..+...+.|+.
T Consensus 92 d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 92 DEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99988 89999999999999988777666653
No 176
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.60 E-value=4.1e-15 Score=130.75 Aligned_cols=103 Identities=31% Similarity=0.418 Sum_probs=83.6
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHD 517 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~ 517 (569)
.+.|+|+|++|++|+..+..|.+||||++++... ..+++|++++++.||.|||.|.|.+... ....|.|+|||++
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 4889999999999999998899999999998532 2467899999999999999999998632 3346999999999
Q ss_pred CCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 518 TFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 518 ~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
..+. ++||++.+++... +.....|+.+-
T Consensus 93 ~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 93 RVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred CCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 8875 7999999998732 23345666653
No 177
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.59 E-value=1e-15 Score=149.54 Aligned_cols=109 Identities=34% Similarity=0.593 Sum_probs=93.4
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccC-CCCEEEEEEEECCC
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDG-LHDMLIAEVWDHDT 518 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-~~~~l~i~V~d~~~ 518 (569)
...|.|+|.+|+||.++|.+|.+||||++.+-. ...+++|++++.++||+|||+|+|.+... .+..|.|+|||+|.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 367999999999999999999999999999942 34578999999999999999999999743 45689999999999
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCCCCCe
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKSG 552 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G 552 (569)
.++ ||+|..++.++++..+. .+.||.|-....|
T Consensus 259 TsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEG 292 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEG 292 (683)
T ss_pred cccccccceecccHHHHhhcc-hhhHHHHhhhhcC
Confidence 876 89999999999987654 4889988655444
No 178
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.59 E-value=2.7e-14 Score=124.68 Aligned_cols=111 Identities=24% Similarity=0.468 Sum_probs=91.2
Q ss_pred EEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC-----------eeEeecccCCCCCCee-ceEEEEEeccCCCCEEEEE
Q 008334 445 VLSVTVILAENLPASDLMGKADPYVVLTMKKSE-----------TRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE 512 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-----------~~~~T~~~~~t~nP~w-~e~f~f~v~~~~~~~l~i~ 512 (569)
.+.|++++|++|+ .+..|.+||||++++.... .+++|+++++++||+| ||+|.|.+. .++.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 3678999999998 6677999999999996322 3689999999999999 999999986 35689999
Q ss_pred EEECCCCC----CceeEEEEEecceeeecc---eEeEEEEcCCC-----CCeEEEEEE
Q 008334 513 VWDHDTFG----KDYMGRCILTLTRVILEG---EYTDCFELDGT-----KSGKLKLHL 558 (569)
Q Consensus 513 V~d~~~~~----~d~lG~~~i~l~~l~~~~---~~~~w~~L~~~-----~~G~i~l~~ 558 (569)
|||++..+ +++||++.+++.++.... ....||+|... -+|+|.+++
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99976543 479999999999997653 35789999743 368888875
No 179
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=2.2e-14 Score=123.03 Aligned_cols=114 Identities=31% Similarity=0.512 Sum_probs=88.8
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC--CcEEEEEEEECCCCCCC
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~v~d~~~~~~d 337 (569)
|.|+|++|++|+.. +.+||||+++++ +.+.++|+++++ .||+|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 68999999999876 789999999997 234578999888 99999999999987542 34688888988876556
Q ss_pred cceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 338 ELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
..+|. +++..+..+...+.|++|.+.. ......|+|++.+.|
T Consensus 76 ~~~g~--v~l~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGK--VALSKLDLGQGKDEWFPLTPVD---PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEE--EEecCcCCCCcceeEEECccCC---CCCCcCceEEEEEEC
Confidence 66665 4555555577789999997532 234678999999876
No 180
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=7e-16 Score=150.75 Aligned_cols=109 Identities=33% Similarity=0.582 Sum_probs=94.7
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecC-CCcEEEEEEEECC
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDE-STQHLVVRIYDDE 332 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~v~d~~ 332 (569)
....|+|+|.+|+||.++|.+|.+||||++.+-|.. ..+++|++++.++||+|||+|.|.+... ....|.++|||+|
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 346788999999999999999999999999997644 3468899999999999999999998754 4568999999999
Q ss_pred CCCCCcceEEEEEEccccCCCceeEEEEEcccc
Q 008334 333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKD 365 (569)
Q Consensus 333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~ 365 (569)
+.+++|++|+.++.+++|.... .+.|++|...
T Consensus 258 rTsRNDFMGslSFgisEl~K~p-~~GWyKlLsq 289 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQ 289 (683)
T ss_pred ccccccccceecccHHHHhhcc-hhhHHHHhhh
Confidence 9999999999999999987543 6789998653
No 181
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.6e-14 Score=122.58 Aligned_cols=108 Identities=24% Similarity=0.424 Sum_probs=85.3
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC--CCEEEEEEEECCCCCC-c
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL--HDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~--~~~l~i~V~d~~~~~~-d 522 (569)
|+|+|++|++|+.. |.+||||++++++ ...++|+++++ .||.|||+|.|.+.... ...|.+.+||.+..++ .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999976 7899999999975 35679999988 99999999999997532 3468888898876544 4
Q ss_pred eeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334 523 YMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 560 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (569)
.+|.+.|. .+..++..++||+|.+. ..|+|++++.|
T Consensus 77 ~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66665554 44446667999999764 37999999876
No 182
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.58 E-value=1.3e-14 Score=121.25 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=70.2
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC------
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD------ 331 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~------ 331 (569)
|.|+|++|+||+ +.+||||++++.+.+ ..++||+++++|+||+|||+|.|.+. ..+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccc
Confidence 579999999996 568999999997543 35799999999999999999999986 366999999998
Q ss_pred -CCCCCCcceEEEEEEcc
Q 008334 332 -EGIQSSELIGCAQVRLC 348 (569)
Q Consensus 332 -~~~~~d~~iG~~~i~l~ 348 (569)
|..+.|+++|.+.+.|+
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 45678999988888775
No 183
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.58 E-value=2.2e-14 Score=126.12 Aligned_cols=105 Identities=27% Similarity=0.333 Sum_probs=85.3
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-C---eeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEE
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-E---TRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWD 515 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~---~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d 515 (569)
..+.|.|+|++|+||+..+..|.+||||++++... . .+++|++++++.||+|||+|.|.+.. .....|.|+|||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~ 92 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence 35889999999999999998899999999999532 1 35799999999999999999999973 355689999999
Q ss_pred CCCCCC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
.+..++ ++||++.+++...- ..+..+|+.+.
T Consensus 93 ~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l 124 (138)
T cd08408 93 KRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMK 124 (138)
T ss_pred CCCCCCCcEEEEEEECCcCCC-chHHHHHHHHH
Confidence 988765 79999999987542 12235666653
No 184
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.58 E-value=1.4e-14 Score=124.63 Aligned_cols=92 Identities=32% Similarity=0.430 Sum_probs=79.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-CCCCEEEEEEEECCCCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-GLHDMLIAEVWDHDTFG 520 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-~~~~~l~i~V~d~~~~~ 520 (569)
..+.|+|+|++|++|+. +..+.+||||++++++ .+++|++++++.||+|||+|.|.... .....|.|+|||++..+
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 45899999999999984 5678899999999975 48899999999999999999997532 35678999999999986
Q ss_pred C-ceeEEEEEecceeee
Q 008334 521 K-DYMGRCILTLTRVIL 536 (569)
Q Consensus 521 ~-d~lG~~~i~l~~l~~ 536 (569)
+ ++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 5 799999999997653
No 185
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.57 E-value=8e-14 Score=121.62 Aligned_cols=119 Identities=25% Similarity=0.404 Sum_probs=95.6
Q ss_pred EEEEEEEEeeccccCC--CCCCCCcEEEEEEecCC---CCeEEeeecCCCC-CCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334 259 TLEVKLVQAKGLTNKD--LIGKSDPYAVLFVRPLP---EKTKKSKTINNDL-NPIWNEHFEFIVEDESTQHLVVRIYDDE 332 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~-nP~wne~f~f~v~~~~~~~L~i~v~d~~ 332 (569)
.|+|+|++|++|+..+ ..+.+||||++++...+ ...++|+++.++. ||+|||+|.|.+.......|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57889999999996432 4578999887765 9999999999998666668999999999
Q ss_pred CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEE
Q 008334 333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
.. ++++||.+.++++++..+. .|++|.... ......|.|.+.+..
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~---~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK---GEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCCC---CCCCcceeEEEEEEE
Confidence 87 8999999999999996653 577775321 122456888887764
No 186
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=3.6e-15 Score=131.26 Aligned_cols=108 Identities=28% Similarity=0.433 Sum_probs=92.7
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCC--CcEEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDES--TQHLVVRIYD 330 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~v~d 330 (569)
+..|.|.|+|++|++|+..+..+.+||||++++.+.+. ..++|++++++.||.|||+|.|.+.... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 45689999999999999988888999999999975432 3678999999999999999999986542 5689999999
Q ss_pred CCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
++..+++++||.+.+++++ .+...+.|++|..
T Consensus 91 ~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 91 KDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred cCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 9988889999999999998 5566788988864
No 187
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=4.3e-14 Score=121.70 Aligned_cols=99 Identities=27% Similarity=0.374 Sum_probs=85.3
Q ss_pred EEEEeEcCCCCCCCCCCCcEEEEEEeCCC-----eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC----C
Q 008334 449 TVILAENLPASDLMGKADPYVVLTMKKSE-----TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT----F 519 (569)
Q Consensus 449 ~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-----~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~----~ 519 (569)
..++|++|+..+..|.+||||++++.+.. ..++|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 35889999999988999999999997643 35899999999999999999998764456789999999986 5
Q ss_pred CC-ceeEEEEEecceeeecceEeEEEEcC
Q 008334 520 GK-DYMGRCILTLTRVILEGEYTDCFELD 547 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~~~~~w~~L~ 547 (569)
++ ++||++.+++.++..+.....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 79999999999998877778899984
No 188
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=8.3e-14 Score=144.35 Aligned_cols=122 Identities=36% Similarity=0.527 Sum_probs=105.5
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC-CeeEeecccCCCCCCeeceEEEEEecc--CCCCEEEEEEEECCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKS-ETRNKTRVVNDCLNPIWNQTFDFVVED--GLHDMLIAEVWDHDT 518 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~-~~~~~T~~~~~t~nP~w~e~f~f~v~~--~~~~~l~i~V~d~~~ 518 (569)
....|.|+|.+|++|+..+..|.+||||++++... ..+.+|++.++|+||.|||+|.|.+.. .....|.++|||.|.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 45789999999999999997778999999999753 368899999999999999999999753 356789999999999
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeec
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQ 563 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~ 563 (569)
+++ ++||.+.++|..+........|.++... ..|+|.+.++|.|.
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecC
Confidence 987 7999999999988777667889998542 24799999999997
No 189
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=1e-13 Score=120.11 Aligned_cols=111 Identities=30% Similarity=0.468 Sum_probs=90.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-c
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-D 522 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d 522 (569)
..|.|+|.+|+ |...+..+.+||||++++++ ...++|++++++.||.|||.|.|.+.. .+.|.|+|||++..+. +
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~-~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG-QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC-cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCc
Confidence 36899999998 55555578899999999975 247899999999999999999999863 5789999999998865 7
Q ss_pred eeEEEEEecceeeecce-----EeEEEEcCC------CCCeEEEEEE
Q 008334 523 YMGRCILTLTRVILEGE-----YTDCFELDG------TKSGKLKLHL 558 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~~~-----~~~w~~L~~------~~~G~i~l~~ 558 (569)
+||++.++|.++..... ...|+++.. ...|++++++
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999876532 246888842 3378888875
No 190
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=1.8e-13 Score=119.36 Aligned_cols=114 Identities=27% Similarity=0.417 Sum_probs=93.6
Q ss_pred eEEEEEEEEeEcCCCCC--CCCCCCcEEEEEEeC----CCeeEeecccCCCC-CCeeceEEEEEeccCCCCEEEEEEEEC
Q 008334 444 GVLSVTVILAENLPASD--LMGKADPYVVLTMKK----SETRNKTRVVNDCL-NPIWNQTFDFVVEDGLHDMLIAEVWDH 516 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~--~~g~~dpyv~v~l~~----~~~~~~T~~~~~t~-nP~w~e~f~f~v~~~~~~~l~i~V~d~ 516 (569)
-.|+|+|++|++|+..+ ..+.+||||++++.+ ...+++|+++.++. ||.|||+|.|.+..+....|.++|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999877 578899999999953 23568999887765 999999999999866667899999999
Q ss_pred CCCCCceeEEEEEecceeeecceEeEEEEcCC-----CCCeEEEEEEEE
Q 008334 517 DTFGKDYMGRCILTLTRVILEGEYTDCFELDG-----TKSGKLKLHLKW 560 (569)
Q Consensus 517 ~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~~~~ 560 (569)
+..++++||++.++++++..+ ..|++|.+ ...|.|.+++++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 887557999999999998432 56788853 246899988875
No 191
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=4.1e-14 Score=165.79 Aligned_cols=121 Identities=14% Similarity=0.294 Sum_probs=103.5
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC-CcEEEEEEEECCC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES-TQHLVVRIYDDEG 333 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-~~~L~i~v~d~~~ 333 (569)
.-.|.|+|+|++|+||. +..|.+||||++.+++ .++.||++++++.||+|||+|.|.+.++. ++.+.++|||+|.
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 35799999999999998 4468999999999983 34678999999999999999999998774 4679999999999
Q ss_pred CCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeE---EEEEEEEEe
Q 008334 334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQ---VHLELLYCP 386 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~---l~l~l~~~p 386 (569)
++ ++.+|.+.+++.++..++....||+|.+ +++..|. |++++.|.+
T Consensus 2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLNP------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC-CCCCceEEEEHHHHhcCceeeeeeecCc------ccccCCCcceEEEEEEecC
Confidence 85 5599999999999999999999999953 2345666 999998853
No 192
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.51 E-value=1.2e-13 Score=116.95 Aligned_cols=91 Identities=26% Similarity=0.446 Sum_probs=76.7
Q ss_pred EEEEeeccccCCCCCCCCcEEEEEEecCC---CCeEEeeecCCCCCCeeccEEEEEEecCC----CcEEEEEEEECCCCC
Q 008334 263 KLVQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDES----TQHLVVRIYDDEGIQ 335 (569)
Q Consensus 263 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~~----~~~L~i~v~d~~~~~ 335 (569)
-.++|++|+..|..|.+||||++++.+.. ...++|++++++.||+|| +|.|.+.... .+.|.|+|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 34789999999999999999999987432 236899999999999999 6888764332 568999999999999
Q ss_pred CCcceEEEEEEccccCCCc
Q 008334 336 SSELIGCAQVRLCELEPGK 354 (569)
Q Consensus 336 ~d~~iG~~~i~l~~l~~~~ 354 (569)
+|++||++.++++++..+.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 84 KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCcEEEEEEEEHHHHhcCC
Confidence 9999999999999997544
No 193
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.49 E-value=5.2e-13 Score=111.62 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=79.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCC---CeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECC-----
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKS---ETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHD----- 517 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~---~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~----- 517 (569)
|.|+|++|+||+ +.+||||+++++.. ..+.+|+++++|+||+|||+|+|.+.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 579999999995 45899999998642 357899999999999999999999973 668999999983
Q ss_pred --CCCC-ceeEEEEEecc--eeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334 518 --TFGK-DYMGRCILTLT--RVILEGEYTDCFELDGTKSGKLKLHLKW 560 (569)
Q Consensus 518 --~~~~-d~lG~~~i~l~--~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (569)
..++ +.+|++.+.|+ .+...+....-+.|.+- +|.++++|
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~~---~~~~s~~~ 118 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNGI---TVNLSIKF 118 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecCE---EEEEEEeC
Confidence 3344 69988877764 34444555666666652 45555543
No 194
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.45 E-value=4.1e-13 Score=107.75 Aligned_cols=85 Identities=35% Similarity=0.596 Sum_probs=76.1
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|+|+|++|++|...+..+..||||++++.......++|+++.++.+|.|+|+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998533356999999999999999999999887777789999999999988999
Q ss_pred eEEEE
Q 008334 340 IGCAQ 344 (569)
Q Consensus 340 iG~~~ 344 (569)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99873
No 195
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.41 E-value=1.5e-12 Score=110.28 Aligned_cols=89 Identities=26% Similarity=0.510 Sum_probs=74.7
Q ss_pred EEEEEeEcCCCCCCCCCCCcEEEEEEeCCC----eeEeecccCCCCCCeeceEEEEEeccC----CCCEEEEEEEECCCC
Q 008334 448 VTVILAENLPASDLMGKADPYVVLTMKKSE----TRNKTRVVNDCLNPIWNQTFDFVVEDG----LHDMLIAEVWDHDTF 519 (569)
Q Consensus 448 v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~----~~~~T~~~~~t~nP~w~e~f~f~v~~~----~~~~l~i~V~d~~~~ 519 (569)
+..++|++|+..+..|.+||||++++.+.. ..++|++++++.||.|| .|.|.+... ....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 346799999999999999999999986532 46899999999999999 688876532 256899999999998
Q ss_pred CC-ceeEEEEEecceeeec
Q 008334 520 GK-DYMGRCILTLTRVILE 537 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~ 537 (569)
++ ++||+++++++++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 76 7999999999999743
No 196
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7.1e-13 Score=135.13 Aligned_cols=113 Identities=33% Similarity=0.662 Sum_probs=96.9
Q ss_pred ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCC-
Q 008334 441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTF- 519 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~- 519 (569)
..+..++++|.+|.+|.+.|..|++||||.+.++. .+.+|+++...+||+|||.|.|.+.+ ..+.|.+.|||+|..
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dl 368 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDL 368 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccH
Confidence 46789999999999999999999999999999976 77899999999999999999999996 567899999998742
Q ss_pred -----------CCceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEE
Q 008334 520 -----------GKDYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHL 558 (569)
Q Consensus 520 -----------~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~ 558 (569)
++||||+..|.+..+ .++++-||+|+.. -+|.|++.+
T Consensus 369 ksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhi 421 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHI 421 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEE
Confidence 457999999998876 4668999999753 367666544
No 197
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.36 E-value=6.5e-12 Score=100.69 Aligned_cols=83 Identities=46% Similarity=0.802 Sum_probs=74.1
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC-eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
|+|+|++|++|+..+..+.+||||++++++.. ..++|++++++.+|.|+|+|.|.+..+..+.|.|+|||++..++ ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998633 46899999999999999999999887777779999999999885 69
Q ss_pred eEEEE
Q 008334 524 MGRCI 528 (569)
Q Consensus 524 lG~~~ 528 (569)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 198
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2e-12 Score=131.96 Aligned_cols=121 Identities=31% Similarity=0.592 Sum_probs=101.0
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC-
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI- 334 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~- 334 (569)
=...++++|+.|.+|..+|..|++||||.+.++ +.+.+|+++...+||+|||.|.|..++. ++.+.+.|||.|..
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~---ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dl 368 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG---KTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDL 368 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeec---ccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccH
Confidence 357899999999999999999999999999998 7788999999999999999999999864 66899999998742
Q ss_pred ----------CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 335 ----------QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 335 ----------~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
..|||+|+..+.+..|.. ..+.|+.|.++.. ....+|.|++.+...
T Consensus 369 ksklrqkl~resddflgqtvievrtlsg--emdvwynlekrtd---ksavsgairlhisve 424 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTD---KSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccc---hhhccceEEEEEEEE
Confidence 358999999999887743 4679999986542 445678776666543
No 199
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.32 E-value=1.7e-12 Score=139.12 Aligned_cols=91 Identities=27% Similarity=0.404 Sum_probs=79.2
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d 337 (569)
-..+|.|++|-+|.+.|.+|.+|||+++.++. ....-++..+.+|+||+|.+.|.+....+....+.++|||+|..+.|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk-~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK-KRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeecc-chhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 35679999999999999999999999999982 11225677789999999999999988877777899999999999999
Q ss_pred cceEEEEEEccc
Q 008334 338 ELIGCAQVRLCE 349 (569)
Q Consensus 338 ~~iG~~~i~l~~ 349 (569)
+.||+..++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999875
No 200
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.30 E-value=1.7e-11 Score=105.53 Aligned_cols=95 Identities=20% Similarity=0.357 Sum_probs=79.8
Q ss_pred EEEEEEEeeccccC--CCCCC--CCcEEEEEEecCCCCeEEeeecCCCCC--CeeccEEEEEEecC--------------
Q 008334 260 LEVKLVQAKGLTNK--DLIGK--SDPYAVLFVRPLPEKTKKSKTINNDLN--PIWNEHFEFIVEDE-------------- 319 (569)
Q Consensus 260 L~V~v~~a~~L~~~--d~~g~--~dpyv~v~~~~~~~~~~kT~~~~~t~n--P~wne~f~f~v~~~-------------- 319 (569)
|+|.|.+|++++.. +..|. +||||+..+.+....+++|.+..+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999996643 33564 999999999865567789999999999 99999999887641
Q ss_pred ---------CCcEEEEEEEECCCCCCCcceEEEEEEccccCCCc
Q 008334 320 ---------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGK 354 (569)
Q Consensus 320 ---------~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~ 354 (569)
....|.++|||+|.+++|++||.+.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24579999999999999999999999999886654
No 201
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.28 E-value=4.1e-11 Score=99.05 Aligned_cols=96 Identities=38% Similarity=0.655 Sum_probs=81.9
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
+.|+|++|++|......+..+|||++++.+.+...++|+++.++.||.|||+|.|.+.....+.|.++|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67999999999987765678999999998322257899999988999999999999987657799999999998777899
Q ss_pred eEEEEEEccccCCCce
Q 008334 340 IGCAQVRLCELEPGKV 355 (569)
Q Consensus 340 iG~~~i~l~~l~~~~~ 355 (569)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999998876543
No 202
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.27 E-value=3.7e-11 Score=99.06 Aligned_cols=101 Identities=39% Similarity=0.725 Sum_probs=86.3
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcc
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSEL 339 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~ 339 (569)
|.|+|++|++|......+..+|||.+.+.. ...++|+++.++.||.|||.|.|.+.......+.++||+++..+.+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 468999999998866677899999999972 377899999999999999999999986456789999999998877899
Q ss_pred eEEEEEEccccC-CCceeEEEEEc
Q 008334 340 IGCAQVRLCELE-PGKVKDVWLKL 362 (569)
Q Consensus 340 iG~~~i~l~~l~-~~~~~~~~~~L 362 (569)
+|.+.+++.++. .......|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 66666677653
No 203
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.26 E-value=2.9e-11 Score=104.12 Aligned_cols=93 Identities=27% Similarity=0.382 Sum_probs=78.0
Q ss_pred EEEEEEEeEcCCCC--CCCCC--CCcEEEEEEeCC-CeeEeecccCCCCC--CeeceEEEEEeccC--------------
Q 008334 446 LSVTVILAENLPAS--DLMGK--ADPYVVLTMKKS-ETRNKTRVVNDCLN--PIWNQTFDFVVEDG-------------- 504 (569)
Q Consensus 446 L~v~v~~a~~L~~~--~~~g~--~dpyv~v~l~~~-~~~~~T~~~~~t~n--P~w~e~f~f~v~~~-------------- 504 (569)
|+|.|.+|++++.. +..|. +||||+.++.+. ..+++|.+.++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 79999999996654 33564 999999999764 57899999999999 99999999987641
Q ss_pred ---------CCCEEEEEEEECCCCCC-ceeEEEEEecceeeecc
Q 008334 505 ---------LHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEG 538 (569)
Q Consensus 505 ---------~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~ 538 (569)
....|.++|||+|.++. |+||.++++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 24589999999999875 79999999999887654
No 204
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.25 E-value=4e-12 Score=136.29 Aligned_cols=92 Identities=32% Similarity=0.500 Sum_probs=82.4
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK 521 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~ 521 (569)
..-.++|++.+|-+|...|.+|..|||+++.+|++...-+...+.+|+||+|++.|++.+..+....++++|||+|..+.
T Consensus 611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 34568899999999999999999999999999975555677888999999999999999998888889999999999875
Q ss_pred -ceeEEEEEecce
Q 008334 522 -DYMGRCILTLTR 533 (569)
Q Consensus 522 -d~lG~~~i~l~~ 533 (569)
+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 699999999875
No 205
>PLN02270 phospholipase D alpha
Probab=99.22 E-value=1.1e-10 Score=125.90 Aligned_cols=122 Identities=19% Similarity=0.372 Sum_probs=104.3
Q ss_pred cceEEEEEEEEeEcCCCCC------------------CCCCCCcEEEEEEeCCCeeEeecccCCC-CCCeeceEEEEEec
Q 008334 442 IRGVLSVTVILAENLPASD------------------LMGKADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVE 502 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~------------------~~g~~dpyv~v~l~~~~~~~~T~~~~~t-~nP~w~e~f~f~v~ 502 (569)
--|.|.++|.+|++|+..+ ..+.+||||.|.+++ ....||+++.+. .||.|+|+|.+.|.
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeec
Confidence 4589999999999998631 124679999999985 678899999874 69999999999998
Q ss_pred cCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEEEcCCC------CCeEEEEEEEEeecCC
Q 008334 503 DGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCFELDGT------KSGKLKLHLKWMPQPI 565 (569)
Q Consensus 503 ~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~~~~~p~~~ 565 (569)
... ..++|.|+|.+.++..+||.+.||..++..+...+.||++-+. +..+|+++++|.|...
T Consensus 85 h~~-~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred cCc-ceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 754 6799999999999989999999999999999889999998542 2459999999999754
No 206
>PLN02270 phospholipase D alpha
Probab=99.20 E-value=1.8e-10 Score=124.45 Aligned_cols=128 Identities=23% Similarity=0.432 Sum_probs=105.6
Q ss_pred cEEEEEEEEEeeccccCC------------------CCCCCCcEEEEEEecCCCCeEEeeecCCC-CCCeeccEEEEEEe
Q 008334 257 VGTLEVKLVQAKGLTNKD------------------LIGKSDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVE 317 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d------------------~~g~~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~ 317 (569)
.|.|.|+|.+|++|++.+ ..+.+||||.+.++ +.+..||+++.+. .||+|+|+|.+.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE--KARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC--CcEEEEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 12467999999998 4678999999875 59999999999998
Q ss_pred cCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecCCC
Q 008334 318 DESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 390 (569)
Q Consensus 318 ~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 390 (569)
... ..+.|.|.|.+.++ ..+||.+.+|..++..+...+.|+++.... .+..+....|+++++|.|....
T Consensus 85 h~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~--~~p~~~~~~~~~~~~f~~~~~~ 153 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDND--KNPIHGGSKIHVKLQYFEVTKD 153 (808)
T ss_pred cCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCC--CCcCCCCCEEEEEEEEEEcccC
Confidence 765 48999999999886 469999999999999999999999997543 2223344589999999997653
No 207
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.18 E-value=1.9e-10 Score=94.71 Aligned_cols=100 Identities=46% Similarity=0.761 Sum_probs=85.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-cee
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYM 524 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~l 524 (569)
|.|.|++|++|......+..+|||.+.+.+ ...++|+++.++.||.||+.|.|.+.......+.|+||+.+..+. .++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 468999999998866677899999999975 467899999999999999999999986456789999999988764 799
Q ss_pred EEEEEecceee-ecceEeEEEEc
Q 008334 525 GRCILTLTRVI-LEGEYTDCFEL 546 (569)
Q Consensus 525 G~~~i~l~~l~-~~~~~~~w~~L 546 (569)
|++.+++.++. ......+|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999987 55566788765
No 208
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.18 E-value=6e-11 Score=123.22 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=105.0
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCce
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDY 523 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~ 523 (569)
..|.|.|.+|+||++.+..|..||||.|.+.. +...||.++.+++.|.|.|.|.|.+.. .-..|.|-|||+|...++.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-EEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecc-hhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccccccccc
Confidence 45899999999999999999999999999974 678999999999999999999999984 4567999999999433479
Q ss_pred eEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEEeecCC
Q 008334 524 MGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKWMPQPI 565 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~~p~~~ 565 (569)
||.+.|.-+++......+.||.|... -.|+|++++++.+...
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence 99999999999877777999999754 2799999999988643
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=99.17 E-value=4.8e-10 Score=116.48 Aligned_cols=105 Identities=26% Similarity=0.370 Sum_probs=85.8
Q ss_pred cEEEEEEEEEeecccc-----CCCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEE
Q 008334 257 VGTLEVKLVQAKGLTN-----KDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIY 329 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~ 329 (569)
...|.|+|+.|+++.. .+.....||||+|.+. +.+...++|++.+++.||+|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3679999999998751 1223457999999996 23344677888899999999999999999887778999999
Q ss_pred ECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 330 DDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 330 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
|+|..+.|+++|++.+|+..|..|- .+++|..
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~ 519 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYD 519 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccC
Confidence 9998888999999999999999876 4556653
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.17 E-value=3e-10 Score=93.80 Aligned_cols=94 Identities=41% Similarity=0.787 Sum_probs=80.2
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCC-eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ce
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSE-TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DY 523 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~ 523 (569)
+.+.|++|++|......+..+|||++++.... ...+|+.+.++.||.|||.|.|.+.......|.|+|||++..+. .+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 67899999999987665678999999997531 57899999999999999999999986657889999999987764 69
Q ss_pred eEEEEEecceeeecce
Q 008334 524 MGRCILTLTRVILEGE 539 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~ 539 (569)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999866543
No 211
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.13 E-value=3.5e-10 Score=91.51 Aligned_cols=85 Identities=22% Similarity=0.356 Sum_probs=73.0
Q ss_pred HHHHHHHhH-HHH-HHHHHHHHHhHHHHHhh-cCCCccceEEEEEEecCCCCCeEEEEEEEEc-CCCeEEEEEEEEEecC
Q 008334 71 NHHLEKLWP-YVN-EAASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIED-GGSGVTMELEMQWDAN 146 (569)
Q Consensus 71 N~~l~~~W~-~~~-~~~~~~~~~~~~~~l~~-~~p~~i~~i~~~~~~lG~~~P~i~~i~~~~~-~~~~~~le~~~~~~~~ 146 (569)
|.++++++- +++ +.+.+.+++.++..|++ .+|+|+++|++++++||+.||.|+++++.+. .++++.+|++++|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 677887665 443 67999999999999997 5699999999999999999999999999865 4455999999999999
Q ss_pred ceEEEEEEe
Q 008334 147 SSIILAIKT 155 (569)
Q Consensus 147 ~~i~l~~~~ 155 (569)
..+.++++.
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 988888763
No 212
>PLN02952 phosphoinositide phospholipase C
Probab=99.08 E-value=1.9e-09 Score=114.57 Aligned_cols=105 Identities=25% Similarity=0.393 Sum_probs=86.3
Q ss_pred cEEEEEEEEEeeccccC------CCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEE
Q 008334 257 VGTLEVKLVQAKGLTNK------DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 328 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~------d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v 328 (569)
...|.|+|+.|.+++.. +.....||||++.+- +....+++|+++.++.||+|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987521 112335999999986 2334567899999999999999999999877767899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
||+|..+.++++|++.+|+..|..|. .|++|..
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99998888999999999999999886 4888853
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=99.06 E-value=1.8e-09 Score=112.25 Aligned_cols=115 Identities=23% Similarity=0.367 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeEcCCCC-----CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEE
Q 008334 443 RGVLSVTVILAENLPAS-----DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVW 514 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~-----~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~ 514 (569)
...|.|+|+.|.+++.. +....+||||+|.+.+ ...+++|.+..++.||+|||+|+|.+..+.-+.|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999988521 2234579999999964 234567877788999999999999999888889999999
Q ss_pred ECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334 515 DHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 560 (569)
Q Consensus 515 d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (569)
|+|..++ +++|+..+|++.+..+ .++++|.+. ..-+|.+.++|
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG---IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC---ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9998754 7999999999998665 455676433 24567777776
No 214
>PLN02228 Phosphoinositide phospholipase C
Probab=98.97 E-value=6.3e-09 Score=110.00 Aligned_cols=122 Identities=22% Similarity=0.315 Sum_probs=97.2
Q ss_pred ceEEEEEEEEeEcCCC----C--CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCee-ceEEEEEeccCCCCEEEEE
Q 008334 443 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIW-NQTFDFVVEDGLHDMLIAE 512 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~----~--~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w-~e~f~f~v~~~~~~~l~i~ 512 (569)
...|.|+|+.|.+|+. . +.....||||+|.+.+ ...+++|++++++.||+| ||+|+|.+..+.-+.|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 4579999999998742 1 1123479999999864 234678999888899999 9999999998888899999
Q ss_pred EEECCCCCC-ceeEEEEEecceeeecceEeEEEEcCC---C--CCeEEEEEEEEeecCCCC
Q 008334 513 VWDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG---T--KSGKLKLHLKWMPQPIYR 567 (569)
Q Consensus 513 V~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~--~~G~i~l~~~~~p~~~~~ 567 (569)
|+|++..+. +++|+..||++.+..+ .+.++|.+ . ....|.+.+.+.+.++||
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l~~atLfv~~~~~~~~~~~ 567 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAYKNTRLLVSFALDPPYTFR 567 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCCCCeEEEEEEEEcCccccC
Confidence 999987654 7999999999998655 34556643 2 357899999999999997
No 215
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.97 E-value=8e-09 Score=109.67 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=84.9
Q ss_pred cEEEEEEEEEeecccc--C----CCCCCCCcEEEEEEec--CCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEE
Q 008334 257 VGTLEVKLVQAKGLTN--K----DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 328 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~--~----d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v 328 (569)
..+|.|+|+.+.++.. . +.....||||+|.+-. .....++|++..++.||+|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998642 1 2223479999999963 233457888889999999999999999887777899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
+|+|...+|+++|++.+|+..|..|-. .++|..
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~ 580 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFN 580 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc---eEeccC
Confidence 999988889999999999999988763 456643
No 216
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.95 E-value=7.7e-09 Score=106.60 Aligned_cols=183 Identities=23% Similarity=0.345 Sum_probs=130.4
Q ss_pred CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCC----CCCcceEEEEEEccccCCCceeEEEEEccccccc
Q 008334 293 KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGI----QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDV 368 (569)
Q Consensus 293 ~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~----~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~ 368 (569)
+..+|.++.+.+||.|.+.|.+.......|.++++++|.+.. ...+++|++.+.+..+........-+.+.
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~----- 115 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK----- 115 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc-----
Confidence 345889999999999999998887777788999999997643 45799999999999887544322211111
Q ss_pred cCCCcceeEEEEEEEEEecCCCCCcCCCCCCCCChhhHHHHhhcCcccccCCCCCccccccchhhhccccccccceEEEE
Q 008334 369 QRDTKYRGQVHLELLYCPFGMENVFTNPFAPNFSMTSLEKVLTNGEKALKSGANGTEAIELEKDASQKRREVIIRGVLSV 448 (569)
Q Consensus 369 ~~~~~~~G~l~l~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v 448 (569)
.......|+|.+..+=. .......-
T Consensus 116 ~~~~~~~g~iti~aee~-------------------------------------------------------~~~~~~~~ 140 (529)
T KOG1327|consen 116 PGKNAGSGTITISAEED-------------------------------------------------------ESDNDVVQ 140 (529)
T ss_pred cCccCCcccEEEEeecc-------------------------------------------------------cccCceee
Confidence 11223455665544311 00111222
Q ss_pred EEEEeEcCCCCCCCCCCCcEEEEEEe--CC--CeeEeecccCCCCCCeeceEEEEEecc----CCCCEEEEEEEECCCCC
Q 008334 449 TVILAENLPASDLMGKADPYVVLTMK--KS--ETRNKTRVVNDCLNPIWNQTFDFVVED----GLHDMLIAEVWDHDTFG 520 (569)
Q Consensus 449 ~v~~a~~L~~~~~~g~~dpyv~v~l~--~~--~~~~~T~~~~~t~nP~w~e~f~f~v~~----~~~~~l~i~V~d~~~~~ 520 (569)
-..+|++|..++..+++|||..++-. .+ ...++|.+++++++|.|.+ |...... ..+..+.+.+||++..+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 35669999999999999999998853 21 2468999999999999985 3443321 12467899999999988
Q ss_pred C-ceeEEEEEecceeee
Q 008334 521 K-DYMGRCILTLTRVIL 536 (569)
Q Consensus 521 ~-d~lG~~~i~l~~l~~ 536 (569)
+ +++|++..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 7 899999999988754
No 217
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.95 E-value=1.8e-10 Score=119.44 Aligned_cols=127 Identities=34% Similarity=0.614 Sum_probs=103.6
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC----------------------------CeEEeeecCCCCCCe
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE----------------------------KTKKSKTINNDLNPI 307 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~----------------------------~~~kT~~~~~t~nP~ 307 (569)
|.-.+.|.+.+|+||.++|.+|.+|||+...+.+... -.+-|++.+.|+||+
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4455677888999999999999999999998864210 024688889999999
Q ss_pred eccEEEEEEecCCCcEEEEEEEECCCC---------------------------------CC---CcceEEEEEEccccC
Q 008334 308 WNEHFEFIVEDESTQHLVVRIYDDEGI---------------------------------QS---SELIGCAQVRLCELE 351 (569)
Q Consensus 308 wne~f~f~v~~~~~~~L~i~v~d~~~~---------------------------------~~---d~~iG~~~i~l~~l~ 351 (569)
|+|.|.|.+.+..++.+.+.+||+|.- +. |||+|+..+|+.++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999999999999999998731 22 899999999999987
Q ss_pred CCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 352 PGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 352 ~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
... .+.|++|.++. ...+..|.+++.+...-
T Consensus 272 ~~G-ld~WFkLepRS---~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 272 PDG-LDQWFKLEPRS---DKSKVQGQVKLKLWLST 302 (1103)
T ss_pred cch-HHHHhccCccc---ccccccceEEEEEEEee
Confidence 543 68999998653 35678899999998753
No 218
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.92 E-value=2e-08 Score=106.46 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=84.5
Q ss_pred cEEEEEEEEEeeccc----cC--CCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEE
Q 008334 257 VGTLEVKLVQAKGLT----NK--DLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRI 328 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~----~~--d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v 328 (569)
...|.|+|+.+.++. .. +.....||||+|.+. +....+++|+++.++.||+|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 467999999998753 11 122457999999996 3334567899999989999999999999877777899999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCceeEEEEEccc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVK 364 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 364 (569)
+|+|..+.|+++|++.+|+..|..|-. .++|..
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 999987889999999999999988753 456643
No 219
>PLN02952 phosphoinositide phospholipase C
Probab=98.91 E-value=1.5e-08 Score=107.94 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=89.0
Q ss_pred ceEEEEEEEEeEcCCCC------CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEE
Q 008334 443 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 513 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~------~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V 513 (569)
...|.|.|+.|.+++.. +....+||||+|.+.+ ...+.+|+++.++.||+|||+|+|.+..+.-+.+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999987532 1123359999999864 23567899999999999999999999987778899999
Q ss_pred EECCCCCC-ceeEEEEEecceeeecceEeEEEEcCC---CC--CeEEEEEEEE
Q 008334 514 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDG---TK--SGKLKLHLKW 560 (569)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~---~~--~G~i~l~~~~ 560 (569)
+|+|..++ +++|++.+|++.+..+- +|++|.+ .. .-.+.+.+.|
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99988765 79999999999986653 5888863 33 3344555554
No 220
>PLN02228 Phosphoinositide phospholipase C
Probab=98.90 E-value=2.7e-08 Score=105.29 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=94.0
Q ss_pred cEEEEEEEEEeecccc---C---CCCCCCCcEEEEEEec--CCCCeEEeeecCCCCCCee-ccEEEEEEecCCCcEEEEE
Q 008334 257 VGTLEVKLVQAKGLTN---K---DLIGKSDPYAVLFVRP--LPEKTKKSKTINNDLNPIW-NEHFEFIVEDESTQHLVVR 327 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~---~---d~~g~~dpyv~v~~~~--~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~~~~L~i~ 327 (569)
...|+|+|++|.+|+- . +.....||||++.+.. .+...++|++++++.||+| ||+|.|.+..++-.-|+|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998731 1 1123479999999863 3345689999988899999 9999999988777789999
Q ss_pred EEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 328 IYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 328 v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
|+|+|..+.|+++|++.+|+..|..|-. .++|.... ...-...+|.+.+.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~---G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA---GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC---CCCCCCeEEEEEEEEcC
Confidence 9999988889999999999999988753 45664322 11223456777777754
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.88 E-value=6.3e-09 Score=83.91 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=71.2
Q ss_pred EEEEEEEeEcCCCCC---CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCc
Q 008334 446 LSVTVILAENLPASD---LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKD 522 (569)
Q Consensus 446 L~v~v~~a~~L~~~~---~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d 522 (569)
|.|+|+.|+++...+ ..+.++|||.+++++ ..+.||++ +.||.|||.|.|.+. ....+.+.|||+.....-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCCeec
Confidence 578999999998776 677899999999985 45788875 589999999999995 367899999998653224
Q ss_pred eeEEEEEecceeeec
Q 008334 523 YMGRCILTLTRVILE 537 (569)
Q Consensus 523 ~lG~~~i~l~~l~~~ 537 (569)
.+|..-+.+++|..+
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 799999999988754
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.86 E-value=2e-08 Score=106.72 Aligned_cols=115 Identities=24% Similarity=0.379 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeEcCCCC------CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEE
Q 008334 443 RGVLSVTVILAENLPAS------DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 513 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~------~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V 513 (569)
...|.|+|+.|.+++.. +....+||||+|.+.+ ...+.+|++..++.||+|||+|+|.+..++-+.|.|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987532 1223479999999964 23457888888999999999999999988888999999
Q ss_pred EECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334 514 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 560 (569)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (569)
+|++..++ +++|+..||+.++..+ .+.++|.+. ..-.|.+.++|
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G---yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG---IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc---cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99998654 7999999999998665 345566433 23467777766
No 223
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.85 E-value=1.8e-08 Score=106.90 Aligned_cols=121 Identities=23% Similarity=0.373 Sum_probs=91.5
Q ss_pred EEEEEEEEeeccccCC----CCCCCCcEEEEEEe--cCCCCeEEee-ecCCCCCCeeccEEEEEEecCCCcEEEEEEEEC
Q 008334 259 TLEVKLVQAKGLTNKD----LIGKSDPYAVLFVR--PLPEKTKKSK-TINNDLNPIWNEHFEFIVEDESTQHLVVRIYDD 331 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d----~~g~~dpyv~v~~~--~~~~~~~kT~-~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~ 331 (569)
+|.|+|+++.++...- ....+||||.|.+- |......+|+ +..++.||.|+|+|+|.+..++-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766432 12457999999985 2333467888 568899999999999999988888899999999
Q ss_pred CCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
|..++|+|+|+..+|+..|..|-.+ ++|.... ...-...+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~---G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH---VPLLSRE---GEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee---eeecCCC---CccccceeEEEEEEEe
Confidence 9999999999999999999887643 4554321 1222344566665553
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.83 E-value=1.2e-08 Score=82.32 Aligned_cols=85 Identities=24% Similarity=0.417 Sum_probs=69.3
Q ss_pred EEEEEEEeeccccCC---CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCC
Q 008334 260 LEVKLVQAKGLTNKD---LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQS 336 (569)
Q Consensus 260 L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~ 336 (569)
|.|+|..|+|+...+ ..+.+||||.+.++ +.++.||++ +.||.|||+|.|.+. ....+.+.|||+... .
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve--d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~-~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE--DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGD-Q 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC--CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCC-e
Confidence 578999999999877 56889999999998 345788876 579999999999995 356899999998653 4
Q ss_pred CcceEEEEEEccccCC
Q 008334 337 SELIGCAQVRLCELEP 352 (569)
Q Consensus 337 d~~iG~~~i~l~~l~~ 352 (569)
.--+|..-+.+++|..
T Consensus 73 ~~Pi~llW~~~sdi~E 88 (109)
T cd08689 73 PVPVGLLWLRLSDIAE 88 (109)
T ss_pred ecceeeehhhHHHHHH
Confidence 5678888888887743
No 225
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.81 E-value=5.2e-08 Score=103.42 Aligned_cols=115 Identities=24% Similarity=0.359 Sum_probs=88.7
Q ss_pred ceEEEEEEEEeEcCCC----C--CCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEE
Q 008334 443 RGVLSVTVILAENLPA----S--DLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEV 513 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~----~--~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V 513 (569)
...|.|+|+.|.+++. . +.....||||+|.+.+ ...+.+|+++.++.||+|||+|+|.+..+.-+.|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 4679999999987532 1 1223579999999963 23567899999989999999999999888888999999
Q ss_pred EECCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC-----CCeEEEEEEEE
Q 008334 514 WDHDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT-----KSGKLKLHLKW 560 (569)
Q Consensus 514 ~d~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~~~~ 560 (569)
+|+|..+. +++|+..+|++.+..+ -+.++|.+. ..-.+.+.+.|
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 99987654 7999999999998665 345566433 24467777765
No 226
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.80 E-value=2.5e-08 Score=105.86 Aligned_cols=118 Identities=23% Similarity=0.374 Sum_probs=91.4
Q ss_pred EEEEEEEEeEcCCCCC----CCCCCCcEEEEEEeC---CCeeEeec-ccCCCCCCeeceEEEEEeccCCCCEEEEEEEEC
Q 008334 445 VLSVTVILAENLPASD----LMGKADPYVVLTMKK---SETRNKTR-VVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDH 516 (569)
Q Consensus 445 ~L~v~v~~a~~L~~~~----~~g~~dpyv~v~l~~---~~~~~~T~-~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~ 516 (569)
.|.|.|+.+.+++... .....||||.|.+.+ .....+|+ +..++-||.|+|+|+|.+..|.-+-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999766432 234579999999854 23467888 446788999999999999999889999999999
Q ss_pred CCCCC-ceeEEEEEecceeeecceEeEEEEcCCC--CCeEEEEEEEEee
Q 008334 517 DTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT--KSGKLKLHLKWMP 562 (569)
Q Consensus 517 ~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~G~i~l~~~~~p 562 (569)
+..++ ||+|+.++|++++..+-++-.-+..+|. .+-.|.+.+.|.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeeeeecCCCCccccceeEEEEEEEec
Confidence 99984 8999999999999766443333333333 3667888888764
No 227
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.77 E-value=3.1e-08 Score=100.64 Aligned_cols=124 Identities=25% Similarity=0.440 Sum_probs=102.4
Q ss_pred EEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeec-cEEEEEEecC--CCcEEEEEEEECCC
Q 008334 258 GTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWN-EHFEFIVEDE--STQHLVVRIYDDEG 333 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~--~~~~L~i~v~d~~~ 333 (569)
|.|.|+|..|++|+-+|.. ...|.||++.+. ...+||.+..+++||.|| +.|.|.+.+. ....|.+.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~---n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA---NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec---ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7889999999999998864 457999999998 788999999999999999 5688988754 56689999999999
Q ss_pred CCCCcceEEEEEEccccCC----------CceeEEEEEccccccccCCCcceeEEEEEEEEEecCC
Q 008334 334 IQSSELIGCAQVRLCELEP----------GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 389 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~----------~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 389 (569)
.+.+|-||.+.++++.|.- +.....|+++.... ...+|+|.+-+..--+++
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkvdlfnd 140 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKVDLFND 140 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEEeehhh
Confidence 9999999999999998731 34567899987543 467899988877654444
No 228
>PLN02352 phospholipase D epsilon
Probab=98.73 E-value=8.9e-08 Score=103.68 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=92.5
Q ss_pred ccceEEEEEEEEeEcCCCC----CC-CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEE
Q 008334 441 IIRGVLSVTVILAENLPAS----DL-MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD 515 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~----~~-~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d 515 (569)
.--|.|.++|.+|+.+... .. ....+|||.|.+++ ....|| .+..||.|+|+|.+.|.......+.|.|+|
T Consensus 7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 3469999999999844322 11 11239999999975 567788 556699999999999998765679999998
Q ss_pred CCCCCCceeEEEEEecceeeecce-EeEEEEcCCC-----CCeEEEEEEEEeecCCC
Q 008334 516 HDTFGKDYMGRCILTLTRVILEGE-YTDCFELDGT-----KSGKLKLHLKWMPQPIY 566 (569)
Q Consensus 516 ~~~~~~d~lG~~~i~l~~l~~~~~-~~~w~~L~~~-----~~G~i~l~~~~~p~~~~ 566 (569)
+..+||.+.||..++..++. .+.||++-+. ...+|+++++|.|...-
T Consensus 83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence 35799999999999988866 8999998542 22599999999998554
No 229
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.69 E-value=5e-08 Score=102.85 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=89.7
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC----CCeeEeecccCCCCCCeec-eEEEEEeccCCCCEEEEEEEECCC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKK----SETRNKTRVVNDCLNPIWN-QTFDFVVEDGLHDMLIAEVWDHDT 518 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~----~~~~~~T~~~~~t~nP~w~-e~f~f~v~~~~~~~l~i~V~d~~~ 518 (569)
-.|.|.|+.|++|+... .|-..|||.|.+-+ .+..++|.+..+++||+|| |.|+|.|.+|.-+.|.+.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46899999999999543 45567999999854 2234556666889999999 999999999999999999999999
Q ss_pred CCC-ceeEEEEEecceeeecceEeEEEEcCCCCC-----eEEEEEEEEeec
Q 008334 519 FGK-DYMGRCILTLTRVILEGEYTDCFELDGTKS-----GKLKLHLKWMPQ 563 (569)
Q Consensus 519 ~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~i~l~~~~~p~ 563 (569)
+++ .|||+++.|+..+..+ -+..+|++.-+ ..+.+.++..|+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred cCCcceeeeeecchhhhhcc---ceeeecccCchhhhhhhhheeeeEeccc
Confidence 987 6999999999988544 44567766543 334445554443
No 230
>PLN02352 phospholipase D epsilon
Probab=98.68 E-value=1.6e-07 Score=101.82 Aligned_cols=122 Identities=14% Similarity=0.301 Sum_probs=93.0
Q ss_pred ccEEEEEEEEEeeccccC----CCC-CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEE
Q 008334 256 PVGTLEVKLVQAKGLTNK----DLI-GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD 330 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~----d~~-g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d 330 (569)
-.|.|.++|.+|+-+... +.. ...|||+.+.++ +.+..|| .+..||+|+|+|.+.+.......+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG--NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeC--CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 359999999999844321 111 123999999997 4667787 556699999999999987764579999988
Q ss_pred CCCCCCCcceEEEEEEccccCCCce-eEEEEEccccccccCCCcceeEEEEEEEEEecCCC
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKV-KDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGME 390 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~ 390 (569)
...+||.+.+|..++..+.. .+.|+++...... .... ..|+++++|.|....
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~--p~~~-~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK--PNPE-LKLRFMLWFRPAELE 135 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC--CCCC-CEEEEEEEEEEhhhC
Confidence 25799999999999988865 8999999754321 1112 589999999997654
No 231
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.66 E-value=2.8e-08 Score=108.53 Aligned_cols=108 Identities=23% Similarity=0.291 Sum_probs=89.7
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC---CCeeEeecccCCCCCCeeceEEEEE---eccCCCCEEEEEEEE
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKK---SETRNKTRVVNDCLNPIWNQTFDFV---VEDGLHDMLIAEVWD 515 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~---~~~~~~T~~~~~t~nP~w~e~f~f~---v~~~~~~~l~i~V~d 515 (569)
..|.|.|.|+-|++|+....+..+||||+.|+.. +..+.||+++++|.||.|||...+. ........|+++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 4589999999999997665567799999999953 3457899999999999999988765 222345689999999
Q ss_pred CCCCCC-ceeEEEEEecceeeecceEeEEEEcCCC
Q 008334 516 HDTFGK-DYMGRCILTLTRVILEGEYTDCFELDGT 549 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~~~~~~w~~L~~~ 549 (569)
.+.... -++|.+.|+|.++...++...||+|...
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 888765 5999999999999888888899999764
No 232
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.65 E-value=9.2e-09 Score=107.10 Aligned_cols=95 Identities=32% Similarity=0.487 Sum_probs=81.5
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeecCCCCCCeeccEEEEEEecC----CCcEEEEEE
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRI 328 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~v 328 (569)
...|.|.|+.|+++.+-|.+|.+||||++.+.|.. -...+|+++.+|+||+|+|+|+|.|... ....+.|.|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 34566777899999999999999999999998522 2357899999999999999999999744 245789999
Q ss_pred EECCCCCCCcceEEEEEEccccC
Q 008334 329 YDDEGIQSSELIGCAQVRLCELE 351 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~ 351 (569)
+|+|-.+.+||-|++.+.|+++.
T Consensus 1026 MDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eccceecccccchHHHHhhCCCC
Confidence 99999999999999999998874
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.64 E-value=1.5e-07 Score=99.40 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=92.4
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEec---CCCCeEEeeecCCCCCCeec-cEEEEEEecCCCcEEEEEEEECCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP---LPEKTKKSKTINNDLNPIWN-EHFEFIVEDESTQHLVVRIYDDEG 333 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~~~~L~i~v~d~~~ 333 (569)
-.|.|.|+.|+.|+... .|...|||++.+-. +.+..++|.++.+++||+|| |.|.|.+.++.-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 57889999999999443 35567999999852 22344556667899999999 999999999988899999999999
Q ss_pred CCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334 334 IQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 388 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~ 388 (569)
++...|||++..|+..+..|- .-.+|.... ...-.-..+.+.+...|..
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y---SEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGY---SEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred cCCcceeeeeecchhhhhccc---eeeecccCc---hhhhhhhhheeeeEecccc
Confidence 998899999999999987664 223443211 1112334566666666543
No 234
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.46 E-value=4e-07 Score=92.81 Aligned_cols=113 Identities=30% Similarity=0.479 Sum_probs=92.8
Q ss_pred eEEEEEEEEeEcCCCCCCC-CCCCcEEEEEEeCCCeeEeecccCCCCCCeec-eEEEEEecc--CCCCEEEEEEEECCCC
Q 008334 444 GVLSVTVILAENLPASDLM-GKADPYVVLTMKKSETRNKTRVVNDCLNPIWN-QTFDFVVED--GLHDMLIAEVWDHDTF 519 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~-g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~-e~f~f~v~~--~~~~~l~i~V~d~~~~ 519 (569)
|.|-|.|..|++||.+|.. ...|.||+++++. ..++|.+..+++||.|| +=|.|.+.+ ..+..|+|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7889999999999998853 4579999999975 78999999999999999 668888874 3667899999999998
Q ss_pred CC-ceeEEEEEecceeeecc----------eEeEEEEcCCC---CCeEEEEEE
Q 008334 520 GK-DYMGRCILTLTRVILEG----------EYTDCFELDGT---KSGKLKLHL 558 (569)
Q Consensus 520 ~~-d~lG~~~i~l~~l~~~~----------~~~~w~~L~~~---~~G~i~l~~ 558 (569)
+. |.||.+.|+++.+..+. -...||++.+. -.|+|.+-+
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinviv 133 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIV 133 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEE
Confidence 76 89999999998765432 23789998654 367887644
No 235
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.39 E-value=3.3e-07 Score=76.25 Aligned_cols=101 Identities=22% Similarity=0.376 Sum_probs=76.9
Q ss_pred EEEEEEEeEcCCCCC-------------CCCCCCcEEEEEEe--CCCeeEeecccCCCCCCeeceEEEEEec--------
Q 008334 446 LSVTVILAENLPASD-------------LMGKADPYVVLTMK--KSETRNKTRVVNDCLNPIWNQTFDFVVE-------- 502 (569)
Q Consensus 446 L~v~v~~a~~L~~~~-------------~~g~~dpyv~v~l~--~~~~~~~T~~~~~t~nP~w~e~f~f~v~-------- 502 (569)
|.|.|++|.+|.... ..-..|+||++.+. .+++..+|+++.++-.|.|+.+++|+|.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467788888886431 01125899999963 3457889999999999999999999986
Q ss_pred c-------CCCCEEEEEEEECCCCC----------Cc-eeEEEEEecceeeecc-eEeEEEEc
Q 008334 503 D-------GLHDMLIAEVWDHDTFG----------KD-YMGRCILTLTRVILEG-EYTDCFEL 546 (569)
Q Consensus 503 ~-------~~~~~l~i~V~d~~~~~----------~d-~lG~~~i~l~~l~~~~-~~~~w~~L 546 (569)
. .....+.++||++...+ +| .||.+.||+.+++... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 13458999999976431 24 7999999999998764 56999975
No 236
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.29 E-value=5.1e-07 Score=99.05 Aligned_cols=107 Identities=26% Similarity=0.413 Sum_probs=88.3
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEE---EecCCCcEEEEEEEEC
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFI---VEDESTQHLVVRIYDD 331 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~---v~~~~~~~L~i~v~d~ 331 (569)
.|+|.|.|.-|++|.--.....+||||+.++.|...+ +.||+++++|.||.|||...+. ........|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 5889999999999965444566899999999875543 6789999999999999986654 2223456899999999
Q ss_pred CCCCCCcceEEEEEEccccCCCceeEEEEEcc
Q 008334 332 EGIQSSELIGCAQVRLCELEPGKVKDVWLKLV 363 (569)
Q Consensus 332 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 363 (569)
+....+.++|.+.++|.++...+....|+.|.
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 99999999999999999987777677999984
No 237
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.11 E-value=1.1e-05 Score=83.80 Aligned_cols=87 Identities=30% Similarity=0.514 Sum_probs=70.7
Q ss_pred EEeeccccCCCCCCCCcEEEEEEecCC---CCeEEeeecCCCCCCeeccEEEEEEecC----CCcEEEEEEEECCCCCCC
Q 008334 265 VQAKGLTNKDLIGKSDPYAVLFVRPLP---EKTKKSKTINNDLNPIWNEHFEFIVEDE----STQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 265 ~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~~~kT~~~~~t~nP~wne~f~f~v~~~----~~~~L~i~v~d~~~~~~d 337 (569)
.+|++|.++|..+++|||..++-.... ...++|.+.++++||.|.+ |.+..... ....+.+++||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 568999999999999999998864211 2368999999999999998 55554433 245788999999999999
Q ss_pred cceEEEEEEccccCC
Q 008334 338 ELIGCAQVRLCELEP 352 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~ 352 (569)
++||++..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998864
No 238
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.01 E-value=2.6e-05 Score=81.43 Aligned_cols=227 Identities=15% Similarity=0.256 Sum_probs=157.0
Q ss_pred CCCCceecCCC-------CchhHHHHHHHHHhH------HHHHHHHHHHHHhHHHHHhhcCCC-ccceEEEEEEecCCCC
Q 008334 54 FYPSWVVFSHR-------QKLTWLNHHLEKLWP------YVNEAASELIKSSVEPVLEQYRPF-ILSSLKFSKFTLGTVA 119 (569)
Q Consensus 54 ~~p~w~~~~~~-------E~~~WlN~~l~~~W~------~~~~~~~~~~~~~~~~~l~~~~p~-~i~~i~~~~~~lG~~~ 119 (569)
..|.|...-.. -.|-.+|.+++.++. ..+.++.+.+...++..+....-+ .++.+.+.++-||.+.
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f 160 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKF 160 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhcccc
Confidence 46667654221 134555666666665 444556667777777777665443 8999999999999999
Q ss_pred CeEEEEEEEEcC-------------------------CCeEEEEEEEEEecCceEEEEEEeeeceeeeEEEEEEEEEEEE
Q 008334 120 PQFTGVSIIEDG-------------------------GSGVTMELEMQWDANSSIILAIKTRLGVALPVQVKNIGFTGVF 174 (569)
Q Consensus 120 P~i~~i~~~~~~-------------------------~~~~~le~~~~~~~~~~i~l~~~~~~g~~~~v~v~~~~~~g~~ 174 (569)
|.+++.+++.-+ -..+.+-++++|.|+.--++++....+..-.+.|+..+++|.+
T Consensus 161 ~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm~ 240 (1051)
T KOG3532|consen 161 MTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGMV 240 (1051)
T ss_pred ccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccce
Confidence 999999998511 0223456889999987666666666666667889999999999
Q ss_pred EEEeecCCCCCCcceEEEEEecccceeeEEEEE--ccccccCCcchhHHHHHHHHHHHhhhccccceEee--eCCCC---
Q 008334 175 RLIFRPLVDEFPGFAAVSYSLREKKKLDFKLKV--VGGDISTIPGLSDSIEATIHDAIEDSITWPVRKIV--PILPG--- 247 (569)
Q Consensus 175 rv~l~pl~~~~P~~~~~~~~f~~~p~ldf~l~~--~g~~i~~iP~l~~~~~~~i~~~l~~~~~~P~~~~~--~l~~~--- 247 (569)
|+.+. ..|+- .++++|...|.+...++. .|..+.+ .|...+...++.++....+||++..- |..+.
T Consensus 241 r~~~~----r~py~-hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~~ 313 (1051)
T KOG3532|consen 241 RVILS----RQPYH-HWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPIF 313 (1051)
T ss_pred eEEEE----eccce-eeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCccc
Confidence 99886 56664 489999999976665543 2222211 13346778888888899999997532 44331
Q ss_pred -----CccccccCccEEEEEEEEEeeccccCCCCCCCCcEEEEEEec
Q 008334 248 -----DYSELELKPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRP 289 (569)
Q Consensus 248 -----~~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~ 289 (569)
..+.......|.+.|+++++..|... .++..-||.+.+.+
T Consensus 314 ~a~~~~~s~~~i~~~G~~~V~~lE~srL~~~--~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 314 QASPPINSFTHIKMEGGIEVTVLECSRLKDK--NKNYEVYCTVTIES 358 (1051)
T ss_pred ccCcchhhhhheeccCceeEeehhhhhhhcc--CCccceeeeccccC
Confidence 11122335789999999999888644 46778899998864
No 239
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=9.9e-06 Score=78.07 Aligned_cols=104 Identities=24% Similarity=0.345 Sum_probs=80.8
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC--eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEE
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK--TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYD 330 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~--~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d 330 (569)
....-+.|++++|..|...|.+|.+||||..++.+.-+. +++|.+.+++.||+||+.|.|.+... ....+.+.|||
T Consensus 230 s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd 309 (362)
T KOG1013|consen 230 STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGD 309 (362)
T ss_pred cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecc
Confidence 345678899999999999999999999999999854433 57788889999999999999988643 46689999999
Q ss_pred CCCCCCCcceEEEEEEccccCCCceeEEEE
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGKVKDVWL 360 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~ 360 (569)
++..+..+.+|-+...+ ...+..++.|.
T Consensus 310 ~~~G~s~d~~GG~~~g~--~rr~~v~~h~g 337 (362)
T KOG1013|consen 310 YDIGKSNDSIGGSMLGG--YRRGEVHKHWG 337 (362)
T ss_pred cCCCcCccCCCcccccc--cccchhhcCcc
Confidence 99887788888754433 23334444443
No 240
>PLN02964 phosphatidylserine decarboxylase
Probab=97.85 E-value=2.6e-05 Score=84.40 Aligned_cols=88 Identities=17% Similarity=0.356 Sum_probs=73.7
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEE-EEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVL-FVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEG 333 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v-~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~ 333 (569)
.-.|+..+++++|+ ++ ..|+|..+ +++ .+++||.+.++|.||+||+...|.+........++.|||.+.
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEec---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 35699999999988 33 24887554 454 899999999999999999999999987766677999999999
Q ss_pred CCCCcceEEEEEEccccCC
Q 008334 334 IQSSELIGCAQVRLCELEP 352 (569)
Q Consensus 334 ~~~d~~iG~~~i~l~~l~~ 352 (569)
++.++++|.|+++|.++..
T Consensus 121 ~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CCHHHhhhheeecHhhccH
Confidence 9999999999998877643
No 241
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.83 E-value=2.1e-05 Score=60.85 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=68.1
Q ss_pred EEEEEeEcCCCCCCCC-CCCcEEEEEEe-CCCeeEeecccCCCCCCeeceEEEEEec--cCCCCEEEEEEEECCCCCCce
Q 008334 448 VTVILAENLPASDLMG-KADPYVVLTMK-KSETRNKTRVVNDCLNPIWNQTFDFVVE--DGLHDMLIAEVWDHDTFGKDY 523 (569)
Q Consensus 448 v~v~~a~~L~~~~~~g-~~dpyv~v~l~-~~~~~~~T~~~~~t~nP~w~e~f~f~v~--~~~~~~l~i~V~d~~~~~~d~ 523 (569)
+++.+|++|.-....| .+.-|++--+. .+.-.+||.+.....||+|.|+|.|.+. +.....|.+.|++ ....+..
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~ 81 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRT 81 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccce
Confidence 6788999997543322 34456664442 2235789999999999999999999886 3355689999998 3334579
Q ss_pred eEEEEEecceeeecceEeEEEE
Q 008334 524 MGRCILTLTRVILEGEYTDCFE 545 (569)
Q Consensus 524 lG~~~i~l~~l~~~~~~~~w~~ 545 (569)
||.|.+.++++- +++..+|..
T Consensus 82 iG~~sL~l~s~g-eeE~~HW~e 102 (103)
T cd08684 82 IGECSLSLRTLS-TQETDHWLE 102 (103)
T ss_pred eeEEEeecccCC-HHHhhhhhc
Confidence 999999999863 334466643
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.78 E-value=0.0036 Score=62.84 Aligned_cols=256 Identities=12% Similarity=0.128 Sum_probs=147.3
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec-------CCCcEEEEEEEECC
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED-------ESTQHLVVRIYDDE 332 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-------~~~~~L~i~v~d~~ 332 (569)
+.|+|++|++.+... ...-.+..+++ ++...|..+..+..|.||......+.. .....|++++|..+
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n---g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN---GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC---CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 678999999998652 23456666666 788889989999999999988887642 24568999999988
Q ss_pred -CCCCCcceEEEEEEcccc---CCC--ceeEEEEEccccccccCCCcceeEEEEEEEEEecCCCCCcCC--------CCC
Q 008334 333 -GIQSSELIGCAQVRLCEL---EPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFGMENVFTN--------PFA 398 (569)
Q Consensus 333 -~~~~d~~iG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~~~~~~~--------~~~ 398 (569)
..++.+.+|.+.++|... ..+ .....|++|..... +-.+.+-++.+.+........+.... |..
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~ 153 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPR 153 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCccccccccCCCcc
Confidence 556789999999999988 544 46778999975321 22234556777776653222110000 000
Q ss_pred CCCChhhHHHHhhcCc-ccccCCCCCccccccchhhhccccccccceEEEEEEEEeEcCCCCC----C--CCCCCcEEEE
Q 008334 399 PNFSMTSLEKVLTNGE-KALKSGANGTEAIELEKDASQKRREVIIRGVLSVTVILAENLPASD----L--MGKADPYVVL 471 (569)
Q Consensus 399 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~v~~a~~L~~~~----~--~g~~dpyv~v 471 (569)
+. ........+.... ........+ -.+-.....-...-.|.|++..|++|...- . .+...-|...
T Consensus 154 ~~-~~~~~~~~~~~~~l~~~l~~~eg-------~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Y 225 (340)
T PF12416_consen 154 QG-HVPPPNSLLSPATLIPVLLEDEG-------LLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYY 225 (340)
T ss_pred cC-CCcccccccCccceeEEEccCCc-------eEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEE
Confidence 00 0000000000000 000000000 000000011134567999999999987541 1 1123334444
Q ss_pred EEeCCCeeEeecccCCCCCCeec-eEEE-EEeccC---------CCCEEEEEEEECCCCCCceeEEEEEecceeeec
Q 008334 472 TMKKSETRNKTRVVNDCLNPIWN-QTFD-FVVEDG---------LHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE 537 (569)
Q Consensus 472 ~l~~~~~~~~T~~~~~t~nP~w~-e~f~-f~v~~~---------~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~ 537 (569)
.+-+ ....|...+...+|.|. +.-. +.++.. ....|.|.++..+ ..||.+.+++..+...
T Consensus 226 sllG--n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g~----~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 226 SLLG--NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCGN----QSLGSTSVPLQPLLPK 296 (340)
T ss_pred EecC--cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeCC----cEEEEEEEEhhhccCC
Confidence 4544 23455566677788774 3333 665421 2346777777643 4799999999998654
No 243
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.75 E-value=2.5e-05 Score=60.37 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=69.0
Q ss_pred EEEEEEeeccccCCCCCC-CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec--CCCcEEEEEEEECCCCCCC
Q 008334 261 EVKLVQAKGLTNKDLIGK-SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED--ESTQHLVVRIYDDEGIQSS 337 (569)
Q Consensus 261 ~V~v~~a~~L~~~d~~g~-~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~~~~L~i~v~d~~~~~~d 337 (569)
-++++.|++|.-....|. +.-|++--+.-.+....||++.++..||+|+|+|.|.+.. ...-.|-|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 478999999975443332 3346654443233456889999999999999999998753 345578899998 44578
Q ss_pred cceEEEEEEccccCCCceeEEEE
Q 008334 338 ELIGCAQVRLCELEPGKVKDVWL 360 (569)
Q Consensus 338 ~~iG~~~i~l~~l~~~~~~~~~~ 360 (569)
+.||.|.+.++++-.. ..++|.
T Consensus 80 e~iG~~sL~l~s~gee-E~~HW~ 101 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-ETDHWL 101 (103)
T ss_pred ceeeEEEeecccCCHH-Hhhhhh
Confidence 9999999999886432 234554
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.46 E-value=0.00023 Score=59.60 Aligned_cols=103 Identities=17% Similarity=0.379 Sum_probs=73.9
Q ss_pred EEEEEEEeeccccCC---------CC----CCCCcEEEEEEec-CCCCeEEeeecCCCCCCeeccEEEEEEe--------
Q 008334 260 LEVKLVQAKGLTNKD---------LI----GKSDPYAVLFVRP-LPEKTKKSKTINNDLNPIWNEHFEFIVE-------- 317 (569)
Q Consensus 260 L~V~v~~a~~L~~~d---------~~----g~~dpyv~v~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~-------- 317 (569)
|.|.|++|.+|+... +. -.-++||++.+.- .+++..+|+++-++-.|.|+-+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 457788888887421 10 1147999999653 2356788999999999999999999864
Q ss_pred c-------CCCcEEEEEEEECCC----------CCCCcceEEEEEEccccCCC-ceeEEEEEc
Q 008334 318 D-------ESTQHLVVRIYDDEG----------IQSSELIGCAQVRLCELEPG-KVKDVWLKL 362 (569)
Q Consensus 318 ~-------~~~~~L~i~v~d~~~----------~~~d~~iG~~~i~l~~l~~~-~~~~~~~~L 362 (569)
+ .+...+.++||+... ..+|-++|.+.+|+.+|... .....|+++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 134579999999653 23567899999999998543 345677763
No 245
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00022 Score=70.17 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=84.5
Q ss_pred ccceEEEEEEEEeEcCCCCCC-CCCCCcEEEEEEeCCC---eeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEE-
Q 008334 441 IIRGVLSVTVILAENLPASDL-MGKADPYVVLTMKKSE---TRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWD- 515 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~-~g~~dpyv~v~l~~~~---~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d- 515 (569)
...|.+.|.+++|++|..+.. ...++|||+||+-.+. .+.+|+...+|++|.|.+...|.-. +....|.+.||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 457899999999999987543 2268999999985422 3678888899999999888887755 567889999995
Q ss_pred CCCCCC-ceeEEEEEecceeeecc-eEeEEEEcCCC
Q 008334 516 HDTFGK-DYMGRCILTLTRVILEG-EYTDCFELDGT 549 (569)
Q Consensus 516 ~~~~~~-d~lG~~~i~l~~l~~~~-~~~~w~~L~~~ 549 (569)
+..... .|+|.++|-+.++-... ....||+|-+.
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 444433 59999999999986665 55899999764
No 246
>PLN02964 phosphatidylserine decarboxylase
Probab=97.20 E-value=0.00057 Score=74.19 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=71.5
Q ss_pred ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCC
Q 008334 441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG 520 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~ 520 (569)
.-.|+..+++.+|+ ++ ..|+|..+-.-+ .+++||...++|.||+||+...|.+........++.|||.+.++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g-~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFG-EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEec-ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 34689999999987 22 258876644332 48999999999999999999999997555556799999999987
Q ss_pred C-ceeEEEEEecceeeec
Q 008334 521 K-DYMGRCILTLTRVILE 537 (569)
Q Consensus 521 ~-d~lG~~~i~l~~l~~~ 537 (569)
. +.+|.+.++|.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 6 6999999999887654
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.00029 Score=69.34 Aligned_cols=109 Identities=24% Similarity=0.381 Sum_probs=84.4
Q ss_pred CccEEEEEEEEEeeccccCCCC-CCCCcEEEEEEecCCC--CeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEE-
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLI-GKSDPYAVLFVRPLPE--KTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYD- 330 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d- 330 (569)
...|.|.|.|++|++|..+... ..++|||+|++.+.+. -+.+|+...+|.+|-+-+...|.-. +....|.+.||.
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEecc
Confidence 5679999999999999876432 3589999999975332 2567888888988888776666644 456689999995
Q ss_pred CCCCCCCcceEEEEEEccccCCCc-eeEEEEEccc
Q 008334 331 DEGIQSSELIGCAQVRLCELEPGK-VKDVWLKLVK 364 (569)
Q Consensus 331 ~~~~~~d~~iG~~~i~l~~l~~~~-~~~~~~~L~~ 364 (569)
+.+...+.|+|.+.+-+++|.-.. ..-.|++|..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 556667889999999999986554 6778999864
No 248
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.15 E-value=0.00041 Score=68.94 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=92.0
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEe---CCCeeEeecccCCCCCCeeceEEEEEeccC-----------CCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMK---KSETRNKTRVVNDCLNPIWNQTFDFVVEDG-----------LHD 507 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~---~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~-----------~~~ 507 (569)
....|.+.|.++.+++........|.|+++.+. ....+.+|.+++.|.+|.|+|.|.+.+... .+.
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888888865433345788888763 233577899999999999999999998742 122
Q ss_pred EEEEEEEECCCCCC--ceeEEEEEecceeeecceEeEEEEcCCC---CCeEEEEEEEEe
Q 008334 508 MLIAEVWDHDTFGK--DYMGRCILTLTRVILEGEYTDCFELDGT---KSGKLKLHLKWM 561 (569)
Q Consensus 508 ~l~i~V~d~~~~~~--d~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~i~l~~~~~ 561 (569)
-+.|+++.+..+-+ .++|.+.+.|..+...-++...++|.+. -.|.+.+++..+
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence 58999999988743 5999999999988777777888998643 378998888764
No 249
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.01 E-value=0.00048 Score=68.43 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=90.1
Q ss_pred cEEEEEEEEEeeccccCCCCCCCCcEEEEEEe--cCCCCeEEeeecCCCCCCeeccEEEEEEecC-----------CCcE
Q 008334 257 VGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVR--PLPEKTKKSKTINNDLNPIWNEHFEFIVEDE-----------STQH 323 (569)
Q Consensus 257 ~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-----------~~~~ 323 (569)
...|.+.|+++.+++........|-|+.+.+- .+..++.+|.++++|.+|.|+|.|.+.+... ....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 34566777788777644322234678888764 2345678899999999999999999998652 1236
Q ss_pred EEEEEEECCCC-CCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 324 LVVRIYDDEGI-QSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 324 L~i~v~d~~~~-~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
+.|++|++..+ .+|.++|.+.+.+..|...-.....++|.. ......|.|.+.+..-
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-----cccccCCeeEEEEEEe
Confidence 89999998764 568999999999998877666666777742 2345678888887764
No 250
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.76 E-value=0.02 Score=50.52 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=91.2
Q ss_pred ccceEEEEEEEEeEcCCCCC--CCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCC-------------
Q 008334 441 IIRGVLSVTVILAENLPASD--LMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGL------------- 505 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~--~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~------------- 505 (569)
.....|++.|..++-+...- ..+..+.-..+++.-.+++++|+.+..+.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 34578999999988664321 115556666666654458999999999999999999999997432
Q ss_pred CCEEEEEEEECCCCCC-ceeEEEEEecceeeecceE--eEEEEcCCC------CCeEEEEEEEEeecC
Q 008334 506 HDMLIAEVWDHDTFGK-DYMGRCILTLTRVILEGEY--TDCFELDGT------KSGKLKLHLKWMPQP 564 (569)
Q Consensus 506 ~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~~~~--~~w~~L~~~------~~G~i~l~~~~~p~~ 564 (569)
.+.+++.|.-.+..+. .++|.-.+....++..+.. .-...|.|. ..|-+.++++..|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 2468888887777655 6999999999888776654 344455442 479999999988864
No 251
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.60 E-value=0.037 Score=48.83 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred ccEEEEEEEEEeeccccCCCC--CCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCC-------------
Q 008334 256 PVGTLEVKLVQAKGLTNKDLI--GKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDES------------- 320 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~--g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~------------- 320 (569)
..-.|.++|..++-....-.. +..+.-..+++. .++|.++|+.+..+.+|.++|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 446688888887765432111 344444444443 3479999999999999999999999986432
Q ss_pred CcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEEec
Q 008334 321 TQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPF 387 (569)
Q Consensus 321 ~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~ 387 (569)
.+.+.+.|..-|..+...++|+..++...+........++.+.-.-.....+.+.|-+.++++.+|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 3467888887777766789999999998876554432233322111111223578999999999873
No 252
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.55 E-value=0.1 Score=45.90 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=82.9
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe-eEeeccc-CCCCCCeeceEEEEEecc---C-----CCCEEEEE
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSET-RNKTRVV-NDCLNPIWNQTFDFVVED---G-----LHDMLIAE 512 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~-~~~T~~~-~~t~nP~w~e~f~f~v~~---~-----~~~~l~i~ 512 (569)
.-.+.+.+++..+++.. ...-|++...+.... ..+|... .....-.||+.|.+.+.- . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 46788999999999872 223444454443211 2344333 345568999999998751 1 23468899
Q ss_pred EEECCCCCC-ceeEEEEEecceeeec--ceEeEEEEcCCC--CCeEEEEEEEEeecCCCCC
Q 008334 513 VWDHDTFGK-DYMGRCILTLTRVILE--GEYTDCFELDGT--KSGKLKLHLKWMPQPIYRD 568 (569)
Q Consensus 513 V~d~~~~~~-d~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~~~~~p~~~~~~ 568 (569)
|+.....++ ..+|.+.|+|.+.... ......++|.+. ....+++++.+.+....++
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELREDPD 142 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECccCCC
Confidence 988754445 4999999999998875 456788888765 4678888998888755443
No 253
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.69 E-value=0.084 Score=48.15 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=62.5
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH 516 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~ 516 (569)
..++|+++.+.++... ....+-|+++.+-++.+ ...|+.+....++.|||.++|++. -|..+.|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4689999999999862 23456788776543222 235555554577999999999875 24667999999986
Q ss_pred CCCC----------------C-ceeEEEEEeccee
Q 008334 517 DTFG----------------K-DYMGRCILTLTRV 534 (569)
Q Consensus 517 ~~~~----------------~-d~lG~~~i~l~~l 534 (569)
.... + ..||.+.++|-+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 4321 1 3899999998763
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.45 E-value=0.12 Score=46.27 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=61.5
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH 516 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~ 516 (569)
..++|+|+++++++..+ .++-||.+.+-++.+ ...|..+. ..++.|||-.+|++. -+..+.|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46889999999998643 457888887644332 12344333 367999999999875 24667999999996
Q ss_pred CCCC----C-ceeEEEEEeccee
Q 008334 517 DTFG----K-DYMGRCILTLTRV 534 (569)
Q Consensus 517 ~~~~----~-d~lG~~~i~l~~l 534 (569)
.... + ..+|.++++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5421 2 3699999999873
No 255
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.30 E-value=1.2 Score=38.97 Aligned_cols=121 Identities=13% Similarity=0.206 Sum_probs=74.8
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeec-CCCCCCeeccEEEEEEec--------CCCcEEEEEE
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTI-NNDLNPIWNEHFEFIVED--------ESTQHLVVRI 328 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~-~~t~nP~wne~f~f~v~~--------~~~~~L~i~v 328 (569)
=.+.+++++..+++. ....-|+....+.......+|... ..+..-.|||.|.+.+.- .....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 456788889888875 112234444333111102344433 334457899999887641 1234688999
Q ss_pred EECCCCCCCcceEEEEEEccccCCC--ceeEEEEEccccccccCCCcceeEEEEEEEEEecC
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPG--KVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCPFG 388 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~ 388 (569)
+.....++...+|.+.++|.+.... .....-++|.+ .......+++++.+.+..
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~------~~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK------CKKSNATLSISISLSELR 138 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc------CCCCCcEEEEEEEEEECc
Confidence 9875433336899999999999764 34455556532 235567888888887643
No 256
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.29 E-value=0.24 Score=49.96 Aligned_cols=112 Identities=14% Similarity=0.213 Sum_probs=83.5
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEecc-------CCCCEEEEEEEECCC
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVED-------GLHDMLIAEVWDHDT 518 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~-------~~~~~l~i~V~d~~~ 518 (569)
+.|.|.+|++++... .....+...+++ ....|..+..+..|.||..+.+.+.. ..+..|++++|..+.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng--~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG--ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC--ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 578899999998752 345677888876 67788888899999999999998852 245689999998873
Q ss_pred -CC-CceeEEEEEeccee---eec--ceEeEEEEcCCC------CCeEEEEEEEEee
Q 008334 519 -FG-KDYMGRCILTLTRV---ILE--GEYTDCFELDGT------KSGKLKLHLKWMP 562 (569)
Q Consensus 519 -~~-~d~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~~~~~p 562 (569)
.+ ++.+|.+.++|... ..+ .....||+|-+. ..-+|.+.+....
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~ 133 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIED 133 (340)
T ss_pred CCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEec
Confidence 33 47999999999987 333 244799999765 2345666655443
No 257
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.11 E-value=0.054 Score=59.25 Aligned_cols=91 Identities=24% Similarity=0.436 Sum_probs=68.0
Q ss_pred ccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC----CCeEEeeec-CCCCCCeeccE-EEEEE-ecCCCcEEEEEE
Q 008334 256 PVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP----EKTKKSKTI-NNDLNPIWNEH-FEFIV-EDESTQHLVVRI 328 (569)
Q Consensus 256 ~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~----~~~~kT~~~-~~t~nP~wne~-f~f~v-~~~~~~~L~i~v 328 (569)
..+.+.|+|+++.-|..++ ...||.|.+-..+ .+.++|+++ .++.||+|+|+ |.|.- --+.-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 4578899999999998765 3479999985322 235777776 57899999974 66652 223445799999
Q ss_pred EECCCCCCCcceEEEEEEccccCCCc
Q 008334 329 YDDEGIQSSELIGCAQVRLCELEPGK 354 (569)
Q Consensus 329 ~d~~~~~~d~~iG~~~i~l~~l~~~~ 354 (569)
|+.+. .+||+=.+|+..|..|-
T Consensus 777 yeEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 777 YEEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred eccCC----ceeeeeccchhcccCcc
Confidence 99753 69999999999998775
No 258
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.79 E-value=0.95 Score=40.52 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=59.9
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEEC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 331 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~ 331 (569)
..++|+|++++++.-.+ .+|-|+.+.+-..+. ....|+.+. ..++.|||...|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 46789999999987543 358888887642221 122344344 367999999888764 32 355899999997
Q ss_pred CCCC----CCcceEEEEEEcccc
Q 008334 332 EGIQ----SSELIGCAQVRLCEL 350 (569)
Q Consensus 332 ~~~~----~d~~iG~~~i~l~~l 350 (569)
...+ ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 224699999998763
No 259
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.50 E-value=0.4 Score=37.93 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeEE
Q 008334 279 SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKDV 358 (569)
Q Consensus 279 ~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~ 358 (569)
++-.+.+.++ +..+.+|.-.. -.+..|++.|.+.+. .+..|+|.||-+|- ..+-|-.-+.|++... ..
T Consensus 9 ~eV~avLklD--n~~VgqT~Wk~-~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~---RslCav~~lrLEd~~~----~~ 76 (98)
T cd08687 9 SEVSAVLKLD--NTVVGQTQWKP-KSNQAWDQSFTLELE--RSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EV 76 (98)
T ss_pred cceEEEEEEc--CeEEeeccccc-cccccccceeEEEee--cccEEEEEEEEecc---hhhhhheeeEhhhhcc----cc
Confidence 5778888887 35667776543 357899999999986 45689999998875 3467777788877322 22
Q ss_pred EEEccccccccCCCcceeEEEEEEEE
Q 008334 359 WLKLVKDLDVQRDTKYRGQVHLELLY 384 (569)
Q Consensus 359 ~~~L~~~~~~~~~~~~~G~l~l~l~~ 384 (569)
-.+ -.+.|.+..+++|
T Consensus 77 ~~~----------lepqg~l~~ev~f 92 (98)
T cd08687 77 QLD----------MEPQLCLVAELTF 92 (98)
T ss_pred eec----------cccccEEEEEEEe
Confidence 222 3567888877776
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.49 E-value=0.27 Score=44.11 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=61.5
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEEC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDH 516 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~ 516 (569)
..++|.++...+....+ ....+-|+.+.+-.+.+ ...|.....+.++.|||..+|++. -|.++.|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45778888888876521 23456677776643222 234444444468999999999864 24667999999997
Q ss_pred CCCC--C-ceeEEEEEeccee
Q 008334 517 DTFG--K-DYMGRCILTLTRV 534 (569)
Q Consensus 517 ~~~~--~-d~lG~~~i~l~~l 534 (569)
...+ + ..||.++++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7654 2 5899999999874
No 261
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.98 E-value=0.44 Score=43.46 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=57.7
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEEC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 331 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~ 331 (569)
..++|+|+.+.++... ....+-|+.+.+-..+. ....|+......++.|||...|.+. +. ....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3578999999999852 23456777776542111 1235555554567999999888764 33 355899999997
Q ss_pred CCCC----------------CCcceEEEEEEccc
Q 008334 332 EGIQ----------------SSELIGCAQVRLCE 349 (569)
Q Consensus 332 ~~~~----------------~d~~iG~~~i~l~~ 349 (569)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5422 13466777666654
No 262
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.82 E-value=0.29 Score=43.91 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEECCCCCC-ceeEEEEEeccee
Q 008334 463 GKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRV 534 (569)
Q Consensus 463 g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l 534 (569)
..++-||.+.+-++++ ...|..+.-+..+.|||-.+|++. -+.++.|.|+||+....++ ..+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3467788776643222 234555555677899999999985 2466799999999876544 5899999999874
No 263
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.72 E-value=0.14 Score=56.25 Aligned_cols=90 Identities=27% Similarity=0.385 Sum_probs=67.9
Q ss_pred ccceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeC-----CCeeEeecccC-CCCCCeece-EEEEE-eccCCCCEEEEE
Q 008334 441 IIRGVLSVTVILAENLPASDLMGKADPYVVLTMKK-----SETRNKTRVVN-DCLNPIWNQ-TFDFV-VEDGLHDMLIAE 512 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~-----~~~~~~T~~~~-~t~nP~w~e-~f~f~-v~~~~~~~l~i~ 512 (569)
...+.+.|+|++|.=|...+ ...||.|.+-+ ..+.++|+++. ++.||+|+| .|.|. |--+.-+.|.|.
T Consensus 700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 34678999999999887654 34899999854 12457888775 588999985 57764 233456789999
Q ss_pred EEECCCCCCceeEEEEEecceeeec
Q 008334 513 VWDHDTFGKDYMGRCILTLTRVILE 537 (569)
Q Consensus 513 V~d~~~~~~d~lG~~~i~l~~l~~~ 537 (569)
||+.+. .+||+=.+|+..+..+
T Consensus 776 vyeEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 776 VYEEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred eeccCC---ceeeeeccchhcccCc
Confidence 999764 7999999999987554
No 264
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.52 E-value=0.32 Score=44.32 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=64.6
Q ss_pred ceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCee----EeecccC----CCCCCeeceEEEEEec---cCCCCEEEE
Q 008334 443 RGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETR----NKTRVVN----DCLNPIWNQTFDFVVE---DGLHDMLIA 511 (569)
Q Consensus 443 ~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~----~~T~~~~----~t~nP~w~e~f~f~v~---~~~~~~l~i 511 (569)
...+.|+|..+.+++........+-|+.+.+-++.+. ..|+... -...+.|||-.+|.+. -+.++.|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 4668999999999998764445788888877433331 2333221 1235779999999874 246679999
Q ss_pred EEEECCCCC---------C-ceeEEEEEeccee
Q 008334 512 EVWDHDTFG---------K-DYMGRCILTLTRV 534 (569)
Q Consensus 512 ~V~d~~~~~---------~-d~lG~~~i~l~~l 534 (569)
.+|+....+ + ..||.+.++|-+-
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999866543 2 4899999999874
No 265
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.98 E-value=0.63 Score=41.68 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=59.1
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEEC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDD 331 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~ 331 (569)
..++|++....++...+ ....+-|+.+.+-..+. ....|.......++.|||...|.+. +. ....|.|.+|+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 34677788877776411 23356777776642221 2234443333468999999888753 32 355899999998
Q ss_pred CCCC--CCcceEEEEEEcccc
Q 008334 332 EGIQ--SSELIGCAQVRLCEL 350 (569)
Q Consensus 332 ~~~~--~d~~iG~~~i~l~~l 350 (569)
+..+ .+..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7543 467899999998763
No 266
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.92 E-value=0.74 Score=42.00 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=56.6
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe---eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEECC
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSET---RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHD 517 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~---~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~ 517 (569)
..++|+|+.+..+ ..+......-||++.+-++.. ..+|....-+.+|.|||-.+|++. -+..+.|.|.||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4577888888633 332222344566665533222 224555555678999999999875 245679999999852
Q ss_pred CC---------------C--CceeEEEEEecce
Q 008334 518 TF---------------G--KDYMGRCILTLTR 533 (569)
Q Consensus 518 ~~---------------~--~d~lG~~~i~l~~ 533 (569)
.. + ...||.+.+.|-+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEc
Confidence 21 1 1378999998876
No 267
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.88 E-value=1.1 Score=39.33 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=40.3
Q ss_pred EeecccCCC-CCCeeceEEEEEec---cCCCCEEEEEEEECCCCCC-----ceeEEEEEeccee
Q 008334 480 NKTRVVNDC-LNPIWNQTFDFVVE---DGLHDMLIAEVWDHDTFGK-----DYMGRCILTLTRV 534 (569)
Q Consensus 480 ~~T~~~~~t-~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~~~~~-----d~lG~~~i~l~~l 534 (569)
..|.....+ .++.|||.++|++. -|.++.|.|+||+.+.... ..||.+.++|-+-
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 356655555 79999999999874 3467899999998766544 4899999999875
No 268
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=92.68 E-value=1 Score=35.62 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeecceEeEEE
Q 008334 465 ADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEGEYTDCF 544 (569)
Q Consensus 465 ~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~~~~~w~ 544 (569)
.+-.+.+.+.+ ..+.+|.-. .-.+..|++.|++.+. ...+|+|.||-+|- +.+-|..-+.|++... . +
T Consensus 9 ~eV~avLklDn-~~VgqT~Wk-~~s~q~WDQ~Fti~Ld--RsRELEI~VywrD~--RslCav~~lrLEd~~~----~--~ 76 (98)
T cd08687 9 SEVSAVLKLDN-TVVGQTQWK-PKSNQAWDQSFTLELE--RSRELEIAVYWRDW--RSLCAVKFLKLEDERH----E--V 76 (98)
T ss_pred cceEEEEEEcC-eEEeecccc-ccccccccceeEEEee--cccEEEEEEEEecc--hhhhhheeeEhhhhcc----c--c
Confidence 56678888764 345666643 3468899999999988 35789999998875 3566666778877322 2 2
Q ss_pred EcCCCCCeEEEEEEEE
Q 008334 545 ELDGTKSGKLKLHLKW 560 (569)
Q Consensus 545 ~L~~~~~G~i~l~~~~ 560 (569)
.+.-.+.|.+..++.|
T Consensus 77 ~~~lepqg~l~~ev~f 92 (98)
T cd08687 77 QLDMEPQLCLVAELTF 92 (98)
T ss_pred eeccccccEEEEEEEe
Confidence 2333346777777776
No 269
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.20 E-value=0.33 Score=47.09 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=71.7
Q ss_pred CccEEEEEEEEEeeccccCCC--CCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDL--IGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 332 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~ 332 (569)
...|+|.++++++++|.-... .-.-+-||++... .....+|.+.....--.|.|+|..++.+ ...+.+-||.++
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~ 123 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWP 123 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeec--ccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecC
Confidence 457999999999999985332 2345889999876 2223445544444455799999988864 346888999988
Q ss_pred CCCCCcceEEEEEEccccCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 333 GIQSSELIGCAQVRLCELEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 333 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
.-.++++.-...+.+..+... ..+..+.| .-.++|++.+.+.+.
T Consensus 124 pq~RHKLC~~g~l~~~~v~rq-spd~~~Al--------~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 124 PQRRHKLCHLGLLEAFVVDRQ-SPDRVVAL--------YLEPRGQPPLRLPLA 167 (442)
T ss_pred chhhccccccchhhhhhhhhc-CCcceeee--------ecccCCCCceecccC
Confidence 765665543333333322211 11222222 225677777776653
No 270
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.04 E-value=2.1 Score=39.41 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=40.9
Q ss_pred CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCC--CcceEEEEEEcc
Q 008334 293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS--SELIGCAQVRLC 348 (569)
Q Consensus 293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~--d~~iG~~~i~l~ 348 (569)
..++|.+...+.+|.|+|++.+.+... ....|.|++++.....+ ...+|.+-++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 357888888899999999999888643 45689998888543221 245777777763
No 271
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.48 E-value=0.67 Score=41.58 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=51.4
Q ss_pred CCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEECCCCCCCcceEEEEEEcccc
Q 008334 277 GKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSSELIGCAQVRLCEL 350 (569)
Q Consensus 277 g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l 350 (569)
..+|-||.+.+-..+. ....|+.+.-+..+.|||...|.+. +. ....|.|.||+.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4467888887642221 1234555555667899999888764 32 3558999999988665677899999998653
No 272
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.23 E-value=3 Score=38.47 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=41.2
Q ss_pred CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCC-CC---CcceEEEEEEcc
Q 008334 293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-QS---SELIGCAQVRLC 348 (569)
Q Consensus 293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~-~~---d~~iG~~~i~l~ 348 (569)
..++|.+...+.+|.|+|++.+.+... .+..|.|++++.... .+ ...+|.+-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 357888888899999999999888643 566899999886532 11 246787777774
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.90 E-value=0.84 Score=41.56 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=60.5
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecC----CCCCCeeccEEEEEEe--cC-CCcEEEEE
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTIN----NDLNPIWNEHFEFIVE--DE-STQHLVVR 327 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~----~t~nP~wne~f~f~v~--~~-~~~~L~i~ 327 (569)
..+.|+|.++.+++........|-|+.+.+-..+. ....|+... -...+.|||...|.+. +. ....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 45789999999998765444578888887753221 122333211 1235679998888764 22 35589999
Q ss_pred EEECCCCC---------CCcceEEEEEEccc
Q 008334 328 IYDDEGIQ---------SSELIGCAQVRLCE 349 (569)
Q Consensus 328 v~d~~~~~---------~d~~iG~~~i~l~~ 349 (569)
+|+....+ .+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99976543 35688888888765
No 274
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=88.90 E-value=3 Score=34.12 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=48.3
Q ss_pred EEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCe----eEeecccCCCCCCeeceEEEEEec---cCCCCEEEEEEEECCC
Q 008334 446 LSVTVILAENLPASDLMGKADPYVVLTMKKSET----RNKTRVVNDCLNPIWNQTFDFVVE---DGLHDMLIAEVWDHDT 518 (569)
Q Consensus 446 L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~----~~~T~~~~~t~nP~w~e~f~f~v~---~~~~~~l~i~V~d~~~ 518 (569)
+.+.+...++.+.......++-||.+.+-++++ ...|..+.-...+.|||-.+|++. -|..+.|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 556677777776544333357888887643332 224554444566999999999875 3466799999998643
No 275
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=88.66 E-value=0.84 Score=44.40 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=71.1
Q ss_pred ccceEEEEEEEEeEcCCCCCC--CCCCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCC
Q 008334 441 IIRGVLSVTVILAENLPASDL--MGKADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDT 518 (569)
Q Consensus 441 ~~~~~L~v~v~~a~~L~~~~~--~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~ 518 (569)
..+|+|.+++.++++|..... .-..+-||.+.... ..+.+|.+......-.|.|.|+..+-+ ...+.+-||.++.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCc
Confidence 467999999999999975432 33468899998763 234455555555556778999887764 4568888888776
Q ss_pred CCC---ceeEEEEEecceeeecceEeEEEEcCCCCCeEEEEEEEE
Q 008334 519 FGK---DYMGRCILTLTRVILEGEYTDCFELDGTKSGKLKLHLKW 560 (569)
Q Consensus 519 ~~~---d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~~~~ 560 (569)
..+ ...| .+.+..+.. ...++-+-|.-.+.|.+.+.+-+
T Consensus 125 q~RHKLC~~g--~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~ 166 (442)
T KOG1452|consen 125 QRRHKLCHLG--LLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL 166 (442)
T ss_pred hhhccccccc--hhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence 432 3466 233333322 12234445544456666666544
No 276
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.62 E-value=7.1 Score=35.39 Aligned_cols=96 Identities=13% Similarity=0.285 Sum_probs=64.4
Q ss_pred CcEEEEEEeCCCeeEeecccCC--CCCCeeceEEEEEeccCCCCEEEEEEEECCCCCCceeEEEEEecceeeec--ce--
Q 008334 466 DPYVVLTMKKSETRNKTRVVND--CLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILE--GE-- 539 (569)
Q Consensus 466 dpyv~v~l~~~~~~~~T~~~~~--t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~--~~-- 539 (569)
.-|+++.+++ +.+.+|+...- ...=.|||.|.+.+.. ....|.++||.....++..|+.+.+++-..... ..
T Consensus 38 ~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~~~~~~~ 115 (168)
T PF15625_consen 38 RYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITR-WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTVHTSTDNV 115 (168)
T ss_pred eEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEec-CCCEEEEEEEEccCccceEEEEEEeeCCCCcccccccCC
Confidence 4588888875 45666765433 2234568999999876 456799999998875567999999997654322 11
Q ss_pred EeEEEEcCC------------------------CCCeEEEEEEEEeec
Q 008334 540 YTDCFELDG------------------------TKSGKLKLHLKWMPQ 563 (569)
Q Consensus 540 ~~~w~~L~~------------------------~~~G~i~l~~~~~p~ 563 (569)
...|+.+.. .-+|.|++.+.|...
T Consensus 116 ~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~ 163 (168)
T PF15625_consen 116 PLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVG 163 (168)
T ss_pred ceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCC
Confidence 234443311 127999999999764
No 277
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.96 E-value=2.4 Score=39.14 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=34.4
Q ss_pred CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCC---CcceEEEEEEccc
Q 008334 293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS---SELIGCAQVRLCE 349 (569)
Q Consensus 293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~---d~~iG~~~i~l~~ 349 (569)
..+.|.+...+.+|.|+|+|.+.+... ....|.|.+++.....+ +..+|.+.++|-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 356777888889999999999988754 45689999999764321 1688888888865
No 278
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.65 E-value=4.8 Score=36.78 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=43.0
Q ss_pred EEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCC---eEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEECC
Q 008334 259 TLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEK---TKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDE 332 (569)
Q Consensus 259 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~---~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~ 332 (569)
.++|+|+++.++. .+......-||.+.+-. +++ ..+|+...-+.++.|||...|.+. +. ....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677888876433 22122233556654432 122 124555555678999998888764 32 3558999999974
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=83.87 E-value=10 Score=33.21 Aligned_cols=55 Identities=18% Similarity=0.374 Sum_probs=39.1
Q ss_pred EeeecCCC-CCCeeccEEEEEEe--cC-CCcEEEEEEEECCCCCCC----cceEEEEEEcccc
Q 008334 296 KSKTINND-LNPIWNEHFEFIVE--DE-STQHLVVRIYDDEGIQSS----ELIGCAQVRLCEL 350 (569)
Q Consensus 296 kT~~~~~t-~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~~~~~d----~~iG~~~i~l~~l 350 (569)
.|+...-+ .++.|||...|.+. +. ....|.|.||+.+....+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555444 79999999888864 33 456899999998765544 6899999998664
No 280
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=83.15 E-value=19 Score=32.52 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=51.5
Q ss_pred CCcEEEEEEecCCCCeEEeeecCC--CCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccC
Q 008334 279 SDPYAVLFVRPLPEKTKKSKTINN--DLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELE 351 (569)
Q Consensus 279 ~dpyv~v~~~~~~~~~~kT~~~~~--t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~ 351 (569)
..-|+++.++ ++++.+|+...- ...-.+||.|.+.+... -+.|.++||.... ..+..|+.+.+++-...
T Consensus 37 ~~~~ikl~~N--~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFN--DKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEEC--CEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 4468888886 456677766433 33346889999999764 4589999999987 57899999999987553
No 281
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.51 E-value=14 Score=33.93 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=42.6
Q ss_pred eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC---CceeEEEEEecce
Q 008334 478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG---KDYMGRCILTLTR 533 (569)
Q Consensus 478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~---~d~lG~~~i~l~~ 533 (569)
..++|.+...+.+|.|+|++.+.+... ....|.+++++..... ...+|.+-+||-+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 356888889999999999999988632 4567888887754432 2479999999854
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.33 E-value=8.1 Score=31.57 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=45.1
Q ss_pred EEEEEEEeeccccCCCCCCCCcEEEEEEecCCC---CeEEeeecCCCCCCeeccEEEEEEe--cC-CCcEEEEEEEECCC
Q 008334 260 LEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPE---KTKKSKTINNDLNPIWNEHFEFIVE--DE-STQHLVVRIYDDEG 333 (569)
Q Consensus 260 L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~---~~~kT~~~~~t~nP~wne~f~f~v~--~~-~~~~L~i~v~d~~~ 333 (569)
+.+++..+++.........+|-|+.+.+-..+. ....|+...-...+.|||...|.+. +. ....|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 445666666665443223357888887743221 1234554554556899998888754 22 35589999998653
No 283
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=79.93 E-value=4.1 Score=45.67 Aligned_cols=106 Identities=12% Similarity=0.238 Sum_probs=75.9
Q ss_pred CCcEEEEEEecCCCCeEEeeecCCC-CCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCCCceeE
Q 008334 279 SDPYAVLFVRPLPEKTKKSKTINND-LNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKVKD 357 (569)
Q Consensus 279 ~dpyv~v~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~ 357 (569)
.++|+.+.+. .....+|..+.+. .+|.|++.|......... .+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~--~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g-~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLH--KARYRRTHVIYEFLENSRWSFSFDIGFAHKAG-YVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeec--hhhhhchhhhhcccccchhhhhcccccccccc-EEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 4889988886 2344556665555 789999999887766544 78889888887766789999999999998888888
Q ss_pred EEEEccccccccCCCcceeEEEEEEEEEecCC
Q 008334 358 VWLKLVKDLDVQRDTKYRGQVHLELLYCPFGM 389 (569)
Q Consensus 358 ~~~~L~~~~~~~~~~~~~G~l~l~l~~~p~~~ 389 (569)
.|+++..... +..+..-.+.+.+.|.+...
T Consensus 215 ~~~~Il~~d~--~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 215 GWFPILDNDG--KPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ceeeeeccCC--ccccCCcccceEEeeEeech
Confidence 8998764322 11222334566677777654
No 284
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=79.19 E-value=12 Score=30.94 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=45.5
Q ss_pred CCeEEeeecCCCCCCeeccEEEEEEecC-------CCcEEEEEEEECCCCCCCcceEEEEEEccccCCCce--eEEEEEc
Q 008334 292 EKTKKSKTINNDLNPIWNEHFEFIVEDE-------STQHLVVRIYDDEGIQSSELIGCAQVRLCELEPGKV--KDVWLKL 362 (569)
Q Consensus 292 ~~~~kT~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~~~~--~~~~~~L 362 (569)
-+...|.++. +.+|.+|-+-.|.|... .+..+.++++..-. ...+.+|.+.+++..+..... ......+
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 4567777666 78999998888877532 35579999998763 346889999999999864332 3333344
Q ss_pred cccccccCCCcceeEEEEEEEEE
Q 008334 363 VKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 363 ~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
. ...+..-|.+.+.++..
T Consensus 88 ~-----g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 88 V-----GVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp ------BSSS-TSEEEEEEEEEE
T ss_pred e-----ccCCCeEEEEEEEEEec
Confidence 3 22345788888877653
No 285
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=79.15 E-value=20 Score=32.89 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=31.7
Q ss_pred CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECC
Q 008334 293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDE 332 (569)
Q Consensus 293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~ 332 (569)
....|.+...+.+|.|+|++.+.+.-. ....|.|+.|+.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 356778888889999999998887643 4568999999865
No 286
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=78.94 E-value=6.1 Score=36.18 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=39.0
Q ss_pred eEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCC-----CCCcceEEEEEEccc
Q 008334 294 TKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGI-----QSSELIGCAQVRLCE 349 (569)
Q Consensus 294 ~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~-----~~d~~iG~~~i~l~~ 349 (569)
.++|-+..+ .+|.|+|++.+.+... ....|.|++++.+.- .....+|.+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 345544455 8999999999988643 466899999997632 235678888777753
No 287
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=78.53 E-value=9.9 Score=34.99 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=35.1
Q ss_pred eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC--C--ceeEEEEEecce
Q 008334 478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG--K--DYMGRCILTLTR 533 (569)
Q Consensus 478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~--~--d~lG~~~i~l~~ 533 (569)
....|.+...+.+|.|+|+|.+.+... .+..|.|++++..... + ..+|.+.+||.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456788888899999999999988743 4568999999865532 1 489999999987
No 288
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=78.31 E-value=26 Score=32.42 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=42.2
Q ss_pred eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC-----CceeEEEEEecc
Q 008334 478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG-----KDYMGRCILTLT 532 (569)
Q Consensus 478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~-----~d~lG~~~i~l~ 532 (569)
..++|.+.+...+|.|+|++.+.+... ....|.+++++..... ...+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 467888888999999999999988632 5568999998754321 137999999986
No 289
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=77.52 E-value=22 Score=35.38 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=71.9
Q ss_pred cceEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCC--eeceEEEEEeccCCCCEEEEEEEECCCC
Q 008334 442 IRGVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNP--IWNQTFDFVVEDGLHDMLIAEVWDHDTF 519 (569)
Q Consensus 442 ~~~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP--~w~e~f~f~v~~~~~~~l~i~V~d~~~~ 519 (569)
.+-.|-|.|.+..++... ...|+.+..|. ...+|..+.-+..- .-.+.....++ ..+..|.+.++-....
T Consensus 56 RkF~LLVeI~EI~~i~k~-----khiyIef~~Gr--~d~TT~~IpTsKK~RI~IqqRV~IkIR-QcDnTLkI~lfKKkLv 127 (508)
T PTZ00447 56 RTFYLLVKINEIFNINKY-----KHIYIIFSTDK--YDFTTDEIPTNKKNRIHIDQRVDIKIR-QCDETLRVDLFTTKLT 127 (508)
T ss_pred ceeeEEEEehhhhccccc-----eeEEEEEEcCc--eEEEccccccCcCceEEEeeeeeeeee-ecCceEEEEEEecccc
Confidence 345677888777766442 35788888765 55666554333222 22344555555 3567899999998888
Q ss_pred CCceeEEEEEecce-eeecc-eEeEEEEcCC--CCCeEEEEEEE
Q 008334 520 GKDYMGRCILTLTR-VILEG-EYTDCFELDG--TKSGKLKLHLK 559 (569)
Q Consensus 520 ~~d~lG~~~i~l~~-l~~~~-~~~~w~~L~~--~~~G~i~l~~~ 559 (569)
++.-||.+.+.+.+ +.... .-.+||.+.. ...++|.++|-
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEecCCceeeeEEEEeh
Confidence 77899999999975 33332 2379999954 44677777653
No 290
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=75.99 E-value=8.5 Score=35.17 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=39.7
Q ss_pred CeEEeeecCCCCCCeeccEEEEEEecC--CCcEEEEEEEECCCCCC------CcceEEEEEEcc
Q 008334 293 KTKKSKTINNDLNPIWNEHFEFIVEDE--STQHLVVRIYDDEGIQS------SELIGCAQVRLC 348 (569)
Q Consensus 293 ~~~kT~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~v~d~~~~~~------d~~iG~~~i~l~ 348 (569)
....|.+...+.+|.|+|++.+.+.-. ....|.|+.++.+...+ ...+|.+-+||-
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 356788888899999999998888644 45689999998543211 244676666664
No 291
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.41 E-value=12 Score=31.09 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=42.8
Q ss_pred eeEeecccCCCCCCeeceEEEEEecc-------CCCCEEEEEEEECCCCCCceeEEEEEecceeeecc--eEeEEEEcC-
Q 008334 478 TRNKTRVVNDCLNPIWNQTFDFVVED-------GLHDMLIAEVWDHDTFGKDYMGRCILTLTRVILEG--EYTDCFELD- 547 (569)
Q Consensus 478 ~~~~T~~~~~t~nP~w~e~f~f~v~~-------~~~~~l~i~V~d~~~~~~d~lG~~~i~l~~l~~~~--~~~~w~~L~- 547 (569)
..+.|.++. +.+|.+|-+-.|.|.. .....+.|+++..-...-..+|.+.+++.+++... .......|-
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g 89 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERIHGSATLVG 89 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceEEEEEEEec
Confidence 456777765 7899999988888862 13457999998865322258999999999988553 344455553
Q ss_pred --CCCCeEEEEEEEE
Q 008334 548 --GTKSGKLKLHLKW 560 (569)
Q Consensus 548 --~~~~G~i~l~~~~ 560 (569)
+..-|.|...+..
T Consensus 90 ~~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 90 VSGEDFGTLEYWIRL 104 (107)
T ss_dssp SSS-TSEEEEEEEEE
T ss_pred cCCCeEEEEEEEEEe
Confidence 3356777776654
No 292
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=74.03 E-value=3.8 Score=45.92 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=77.1
Q ss_pred CCcEEEEEEeCCCeeEeecccCCC-CCCeeceEEEEEeccCCCCEEEEEEEECCCCC-CceeEEEEEecceeeecceEeE
Q 008334 465 ADPYVVLTMKKSETRNKTRVVNDC-LNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFG-KDYMGRCILTLTRVILEGEYTD 542 (569)
Q Consensus 465 ~dpyv~v~l~~~~~~~~T~~~~~t-~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~-~d~lG~~~i~l~~l~~~~~~~~ 542 (569)
.++|+.+.+.. ....+|....+. .+|.|.+.|+..+... ...+++.|.+.+..+ ...+|.+.++...+..+.....
T Consensus 138 ~e~Ylt~~l~~-~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHK-ARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeech-hhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhccccccc
Confidence 68899999864 345567777666 7899999998888753 567999999999888 6799999999999998877788
Q ss_pred EEEcCCC------CCeEEEEEEEEeecCCCC
Q 008334 543 CFELDGT------KSGKLKLHLKWMPQPIYR 567 (569)
Q Consensus 543 w~~L~~~------~~G~i~l~~~~~p~~~~~ 567 (569)
|+++-.. +.-.+.+.+.|.+...-|
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~~~~~~~~~ 246 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLGFTPMEKDR 246 (887)
T ss_pred eeeeeccCCccccCCcccceEEeeEeechhh
Confidence 8886321 234566677777765433
No 293
>PF15102 TMEM154: TMEM154 protein family
Probab=65.14 E-value=9 Score=33.35 Aligned_cols=6 Identities=33% Similarity=1.077 Sum_probs=4.1
Q ss_pred hHHHHH
Q 008334 68 TWLNHH 73 (569)
Q Consensus 68 ~WlN~~ 73 (569)
.|+|+.
T Consensus 132 kwm~s~ 137 (146)
T PF15102_consen 132 KWMNSM 137 (146)
T ss_pred hHHHhh
Confidence 577764
No 294
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=61.66 E-value=2.5 Score=46.48 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=70.4
Q ss_pred CchhHHHHHHHHHhHHHHHH--HHHHHHHhHHHHHhh-cCCCccceEEEEEEecCCCCCeEEEEEEEEcC-CCeEEEEEE
Q 008334 65 QKLTWLNHHLEKLWPYVNEA--ASELIKSSVEPVLEQ-YRPFILSSLKFSKFTLGTVAPQFTGVSIIEDG-GSGVTMELE 140 (569)
Q Consensus 65 E~~~WlN~~l~~~W~~~~~~--~~~~~~~~~~~~l~~-~~p~~i~~i~~~~~~lG~~~P~i~~i~~~~~~-~~~~~le~~ 140 (569)
+.+-|+|.++.++.--+.+. +.+...+.++.++.. ..|+++..+-..++.-|..||.|++.++.... ....-++.|
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~d 413 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEID 413 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccc
Confidence 46789999999998755443 666777778887766 45889999999999999999999999998763 455567889
Q ss_pred EEEecCceEEEEE
Q 008334 141 MQWDANSSIILAI 153 (569)
Q Consensus 141 ~~~~~~~~i~l~~ 153 (569)
+.|.||..+.+..
T Consensus 414 i~y~~d~~~~i~~ 426 (795)
T KOG2238|consen 414 IEYRGDLTIIIET 426 (795)
T ss_pred eeecccccccccc
Confidence 9999987555444
No 295
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=53.33 E-value=44 Score=30.50 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=38.8
Q ss_pred EeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCCC------CceeEEEEEecce
Q 008334 480 NKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTFG------KDYMGRCILTLTR 533 (569)
Q Consensus 480 ~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~~------~d~lG~~~i~l~~ 533 (569)
++|-+..+ .+|.|+|++.+.+... ....|.+++++..... ...+|.+-+||.+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 8999999999988643 4568999999865332 2489999999986
No 296
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=52.39 E-value=45 Score=30.52 Aligned_cols=56 Identities=18% Similarity=0.180 Sum_probs=41.3
Q ss_pred eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC----CC---ceeEEEEEecce
Q 008334 478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF----GK---DYMGRCILTLTR 533 (569)
Q Consensus 478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~----~~---d~lG~~~i~l~~ 533 (569)
....|.+...+.+|.|+|++.+.+.-. ....|.|+.++.... ++ ..+|.+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 456788888899999999999888633 445788888874332 11 369999999864
No 297
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.09 E-value=4.2 Score=44.31 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=48.9
Q ss_pred CCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECCCCCCCcceEEEEEEccccCC-CceeE
Q 008334 279 SDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDEGIQSSELIGCAQVRLCELEP-GKVKD 357 (569)
Q Consensus 279 ~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~~~~~d~~iG~~~i~l~~l~~-~~~~~ 357 (569)
.|||+.+.+.. .+...+.+...+..|.|+++|...+.. ...+.+.|+.......+.....+++..+++.. .....
T Consensus 28 l~~y~~v~vk~--~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 28 LQPYLAVELKV--KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhheeccce--eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 47888888752 222334446778999999999999764 44788888887654444444444443333332 22334
Q ss_pred EEEEc
Q 008334 358 VWLKL 362 (569)
Q Consensus 358 ~~~~L 362 (569)
.|..+
T Consensus 104 ~w~~~ 108 (694)
T KOG0694|consen 104 LWVLI 108 (694)
T ss_pred hcccc
Confidence 56554
No 298
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=46.58 E-value=2.2e+02 Score=25.61 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=53.0
Q ss_pred EEEEeeccccCCCCCCCCcEEEEEEec-------CCCC-eEEeeecCC-----CCCCeeccEEEEEEecC--CC-cEEEE
Q 008334 263 KLVQAKGLTNKDLIGKSDPYAVLFVRP-------LPEK-TKKSKTINN-----DLNPIWNEHFEFIVEDE--ST-QHLVV 326 (569)
Q Consensus 263 ~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~-~~kT~~~~~-----t~nP~wne~f~f~v~~~--~~-~~L~i 326 (569)
.|.+|.+.. ..+-||+..+.. .+.. ...|.+... +..-.||--|.+.+... .. ..|.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 456777554 346788888752 1223 455555432 33457998777666433 22 47999
Q ss_pred EEEECCCCCCCcceEEEEEEcc
Q 008334 327 RIYDDEGIQSSELIGCAQVRLC 348 (569)
Q Consensus 327 ~v~d~~~~~~d~~iG~~~i~l~ 348 (569)
+||..|..+++...|...+.|-
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999988877763
No 299
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=41.14 E-value=86 Score=28.85 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=41.7
Q ss_pred eeEeecccCCCCCCeeceEEEEEeccC--CCCEEEEEEEECCCC--C--------CceeEEEEEecce
Q 008334 478 TRNKTRVVNDCLNPIWNQTFDFVVEDG--LHDMLIAEVWDHDTF--G--------KDYMGRCILTLTR 533 (569)
Q Consensus 478 ~~~~T~~~~~t~nP~w~e~f~f~v~~~--~~~~l~i~V~d~~~~--~--------~d~lG~~~i~l~~ 533 (569)
....|.+...+.+|.|+|++.+.+.-. ....|.++.++.... . ...+|.+-+||-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 456788888899999999998887632 455788999886421 1 1369999999876
No 300
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.40 E-value=1.9e+02 Score=25.58 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=43.2
Q ss_pred CCCcEEEEEEec-------CC---CCeEEeeecCCCCCC-eeccEEEEEEecCC---CcEEEEEEEECCCCCCCcceEEE
Q 008334 278 KSDPYAVLFVRP-------LP---EKTKKSKTINNDLNP-IWNEHFEFIVEDES---TQHLVVRIYDDEGIQSSELIGCA 343 (569)
Q Consensus 278 ~~dpyv~v~~~~-------~~---~~~~kT~~~~~t~nP-~wne~f~f~v~~~~---~~~L~i~v~d~~~~~~d~~iG~~ 343 (569)
.+|.||+.+.-. .+ +..+.+.-.++-.|| +||--++......+ =..|.+.||..|..++|-+.|..
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg 104 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYG 104 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeee
Confidence 457888877641 11 111112222334444 67765555444321 23688999999999999999998
Q ss_pred EEEcc
Q 008334 344 QVRLC 348 (569)
Q Consensus 344 ~i~l~ 348 (569)
.+++-
T Consensus 105 ~~hiP 109 (187)
T KOG4027|consen 105 MLHIP 109 (187)
T ss_pred eEecC
Confidence 88764
No 301
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=34.55 E-value=18 Score=40.55 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=60.9
Q ss_pred CccEEEEEEEEEeeccccCCCCCCCCcEEEEEEecCC--CCeEEeeecCCCCCCeeccEEEEEEecCCCcEEEEEEEECC
Q 008334 255 KPVGTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLP--EKTKKSKTINNDLNPIWNEHFEFIVEDESTQHLVVRIYDDE 332 (569)
Q Consensus 255 ~~~g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~~~~~~L~i~v~d~~ 332 (569)
-..|.+.+.+.+|..+... ..-||...+...+ .-+.+|.++.+|..|.||++|+..+. ..+.+++..++++
T Consensus 756 l~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~--~sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI--ESQSSRLEKTEKS 828 (1112)
T ss_pred ccccceeeeeccccccccc-----cceeeehhhhhhccccccccceeeecccCCCCChhcccchh--hccccchhhhccc
Confidence 3568999999999988742 4578887765322 34678899999999999999888775 3456667777654
Q ss_pred C----------CCCCcceEEEEEEcc
Q 008334 333 G----------IQSSELIGCAQVRLC 348 (569)
Q Consensus 333 ~----------~~~d~~iG~~~i~l~ 348 (569)
. ...+...|++.+.+.
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~ 854 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLD 854 (1112)
T ss_pred chHHHhhhccchhhcccccccccccC
Confidence 2 123445566655554
No 302
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.07 E-value=13 Score=40.66 Aligned_cols=92 Identities=15% Similarity=0.008 Sum_probs=54.6
Q ss_pred CCCcEEEEEEeCCCeeEeecccCCCCCCeeceEEEEEeccCCCCEEEEEEEECCCCCC-ceeEEEEEecceeeec-ceEe
Q 008334 464 KADPYVVLTMKKSETRNKTRVVNDCLNPIWNQTFDFVVEDGLHDMLIAEVWDHDTFGK-DYMGRCILTLTRVILE-GEYT 541 (569)
Q Consensus 464 ~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w~e~f~f~v~~~~~~~l~i~V~d~~~~~~-d~lG~~~i~l~~l~~~-~~~~ 541 (569)
..+||+.+.+.- .....+.+.+.+..|.|+++|...+.. ...+.|.|+.....+. .+..++++..+++... ....
T Consensus 27 al~~y~~v~vk~-~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKV-KQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccce-eecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhh
Confidence 357888887753 122234446789999999999999774 4568899988764333 2344444444443321 1234
Q ss_pred EEEEcCCCCCeEEEEEEEE
Q 008334 542 DCFELDGTKSGKLKLHLKW 560 (569)
Q Consensus 542 ~w~~L~~~~~G~i~l~~~~ 560 (569)
.|..++. .|++...+.+
T Consensus 104 ~w~~~~~--~g~~~~~~~~ 120 (694)
T KOG0694|consen 104 LWVLIEE--LGTLLKPAAL 120 (694)
T ss_pred hcccccc--ccceeeeecc
Confidence 5665543 3555555444
No 303
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=29.83 E-value=34 Score=27.17 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCCCCCceecCCCCchhHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 008334 52 AEFYPSWVVFSHRQKLTWLNHHLEKLWPYVNEAASELIKSSVEP 95 (569)
Q Consensus 52 ~~~~p~w~~~~~~E~~~WlN~~l~~~W~~~~~~~~~~~~~~~~~ 95 (569)
-.++|+|+.-.|.-.-.-.|.+.+..|.+.+.+++-.-..+|.+
T Consensus 36 LGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~ 79 (108)
T KOG4092|consen 36 LGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISG 79 (108)
T ss_pred ecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhH
Confidence 36799999988888889999999999999888876333333444
No 304
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=27.96 E-value=4e+02 Score=27.78 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=40.9
Q ss_pred cEEEEEEEECCC-----C-CCCcceEEEEEEccccC--C---CceeEEEEEccccccccCCCcceeEEEEEEEEEe
Q 008334 322 QHLVVRIYDDEG-----I-QSSELIGCAQVRLCELE--P---GKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYCP 386 (569)
Q Consensus 322 ~~L~i~v~d~~~-----~-~~d~~iG~~~i~l~~l~--~---~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~p 386 (569)
..|+|.||.-.. + ....+||.+.++|+ +. . -..++.|+.+-+... ...+....++|+.+...|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~-~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQ-GSGKSPSAELHLVVRAEP 168 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEec-cccccCCeeEEEccceecCCCCC-CCCCCCcceEEEEEeccC
Confidence 469999998543 2 35679999999997 32 1 224678998854321 112235678888887654
No 305
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=26.57 E-value=4e+02 Score=22.61 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=50.3
Q ss_pred eEEEEEEEEeEcCCCCCCCCCCCcEEEEEEeCCCeeEeecccCCCCCCee-ceEEEEEec--cCCCCEEEEEEEECCC--
Q 008334 444 GVLSVTVILAENLPASDLMGKADPYVVLTMKKSETRNKTRVVNDCLNPIW-NQTFDFVVE--DGLHDMLIAEVWDHDT-- 518 (569)
Q Consensus 444 ~~L~v~v~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~T~~~~~t~nP~w-~e~f~f~v~--~~~~~~l~i~V~d~~~-- 518 (569)
..|.++-+.-.+.|..+..+...||++++-++ .....|...... .... ...+.+.+. -+-..-+.|++++.+.
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG-KKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETT-EEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCC-ccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 34555555667777766667889999999764 233233322111 1111 122333332 1223458899999873
Q ss_pred CCCceeEEEEEecceee
Q 008334 519 FGKDYMGRCILTLTRVI 535 (569)
Q Consensus 519 ~~~d~lG~~~i~l~~l~ 535 (569)
..++.+.++.+.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 34568888888866554
No 306
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=26.53 E-value=1.9e+02 Score=29.98 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=41.6
Q ss_pred CEEEEEEEECCC-------CCCceeEEEEEecceeeecc----eEeEEEEcCCCC-------CeEEEEEEEEeecCCC
Q 008334 507 DMLIAEVWDHDT-------FGKDYMGRCILTLTRVILEG----EYTDCFELDGTK-------SGKLKLHLKWMPQPIY 566 (569)
Q Consensus 507 ~~l~i~V~d~~~-------~~~d~lG~~~i~l~~l~~~~----~~~~w~~L~~~~-------~G~i~l~~~~~p~~~~ 566 (569)
..|+|.||.... .+..+||++.++|.--..+. -+..|..+.+.. ..++|+.+.-.|++.|
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRf 172 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRF 172 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCee
Confidence 579999998543 12369999999987322222 137899985432 4689998888887655
No 307
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=26.23 E-value=87 Score=32.64 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=30.5
Q ss_pred ceEEEEEEccc-cCCCceeEEEEEccccccccCCCcceeEEEEEEEEE
Q 008334 339 LIGCAQVRLCE-LEPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELLYC 385 (569)
Q Consensus 339 ~iG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~~~ 385 (569)
++|.+.+++.. +..+...+.|+++.... ......|.+ +.+.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~---~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVD---NKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCC---CCCcCcceE-EEEEee
Confidence 48999999999 66677889999986532 223344666 566663
No 308
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.77 E-value=63 Score=21.45 Aligned_cols=9 Identities=11% Similarity=0.777 Sum_probs=4.3
Q ss_pred hheeeeeec
Q 008334 21 YYYYYYYYC 29 (569)
Q Consensus 21 ~~~~~~~~~ 29 (569)
.+++.|||+
T Consensus 30 ~~l~~~~rR 38 (40)
T PF08693_consen 30 AFLFFWYRR 38 (40)
T ss_pred HHhheEEec
Confidence 344445554
No 309
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.13 E-value=52 Score=26.93 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=5.1
Q ss_pred HHHHHhheeeeeec
Q 008334 16 LLLWLYYYYYYYYC 29 (569)
Q Consensus 16 l~~~~~~~~~~~~~ 29 (569)
+.++.+++..|-|+
T Consensus 78 ly~IyYFVILRer~ 91 (101)
T PF06024_consen 78 LYAIYYFVILRERQ 91 (101)
T ss_pred HhhheEEEEEeccc
Confidence 33333333333333
No 310
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=21.66 E-value=22 Score=38.47 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=38.9
Q ss_pred EEEEEEEEEeeccccC--C--CCCCCCcEEEEEEecCCCCeEEeeecCCCCCCeeccEEEEEEec
Q 008334 258 GTLEVKLVQAKGLTNK--D--LIGKSDPYAVLFVRPLPEKTKKSKTINNDLNPIWNEHFEFIVED 318 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~--d--~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~ 318 (569)
|..-++++.|.++.+- + ..-+.++++...++ .+.++|+....+.+|+|||. .+++.+
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~---~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFG---EQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecc---hhhhhhhhhccccccccccc-cccccc
Confidence 4444555666655431 1 11245789998887 78899999999999999996 555543
No 311
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=21.33 E-value=77 Score=24.35 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=7.3
Q ss_pred cCCCCchhHHHHHHHH
Q 008334 61 FSHRQKLTWLNHHLEK 76 (569)
Q Consensus 61 ~~~~E~~~WlN~~l~~ 76 (569)
+-|..+.|=-|..+..
T Consensus 53 YIDP~TYEDP~qAV~e 68 (75)
T PF14575_consen 53 YIDPHTYEDPNQAVRE 68 (75)
T ss_dssp ---GGGSSSHHHHHHH
T ss_pred ecCcccccCHHHHHHH
Confidence 4455566656655543
No 312
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=21.32 E-value=8.7e+02 Score=24.65 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=66.0
Q ss_pred EEEEEEEEEeeccccCCCCCCCCcEEEEEEecCCCCeEEeeecCCCCCC--eeccEEEEEEecCCCcEEEEEEEECCCCC
Q 008334 258 GTLEVKLVQAKGLTNKDLIGKSDPYAVLFVRPLPEKTKKSKTINNDLNP--IWNEHFEFIVEDESTQHLVVRIYDDEGIQ 335 (569)
Q Consensus 258 g~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~~~~~t~nP--~wne~f~f~v~~~~~~~L~i~v~d~~~~~ 335 (569)
=.|-|.|.+..++. -...-|+.+..+ .-..+|..+.-+..- .-.+.....+.. ...+|++.+|-..-.
T Consensus 58 F~LLVeI~EI~~i~-----k~khiyIef~~G---r~d~TT~~IpTsKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKKkLv- 127 (508)
T PTZ00447 58 FYLLVKINEIFNIN-----KYKHIYIIFSTD---KYDFTTDEIPTNKKNRIHIDQRVDIKIRQ-CDETLRVDLFTTKLT- 127 (508)
T ss_pred eeEEEEehhhhccc-----cceeEEEEEEcC---ceEEEccccccCcCceEEEeeeeeeeeee-cCceEEEEEEecccc-
Confidence 34566666655543 223568888876 444555444322221 222333333332 345899999987754
Q ss_pred CCcceEEEEEEccc-c-CCCceeEEEEEccccccccCCCcceeEEEEEEE
Q 008334 336 SSELIGCAQVRLCE-L-EPGKVKDVWLKLVKDLDVQRDTKYRGQVHLELL 383 (569)
Q Consensus 336 ~d~~iG~~~i~l~~-l-~~~~~~~~~~~L~~~~~~~~~~~~~G~l~l~l~ 383 (569)
+..-||.+.+.+.. + ...=+.+.|+.+.+ .++..+.+.+++.
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~k------DGq~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFK------DGQEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEec------CCceeeeEEEEeh
Confidence 46789999988874 3 33346789999843 5677788888763
No 313
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.03 E-value=41 Score=28.59 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHhheeeeeec
Q 008334 4 MMLFFYFVFLILLLLWLYYYYYYYYC 29 (569)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 29 (569)
|+++++.+....+++++++.|+.+|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554455555555544443
Done!