BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008335
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
++ LPP F PTD EL+ +L K A Y+ + I +I+LY ++P L + A G
Sbjct: 14 QLSLPPGFR-FYPTDEELMVQYLCRK--AAGYDFSLQLIAEIDLYKFDPWVLPNKALF-G 69
Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
+ YFF+ R NR A GYW+ TG ++ +G V K +L ++ + P
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAP 128
Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLYDFQ 548
K KT+W+M EY L++ + N + + W LC +Y Q
Sbjct: 129 --KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 393 RMVLPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSG 452
++ LPP F PTD EL+ +L K A Y+ + I +I+LY ++P L + A G
Sbjct: 17 QLSLPPGFR-FYPTDEELMVQYLCRK--AAGYDFSLQLIAEIDLYKFDPWVLPNKALF-G 72
Query: 453 HDKKYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDP 509
+ YFF+ R NR A GYW+ TG ++ +G V K +L ++ + P
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIST-EGQRVGIKKALVFYIGKAP 131
Query: 510 TSKPEKTHWLMKEYMLLKSQQPNQNDE-TPWTLCVLYDFQ 548
K KT+W+M EY L++ + N + + W LC +Y Q
Sbjct: 132 --KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 396 LPPTVAAFIPTDTELVTYHLMNKVSARSYEQLDRFIKDIELYDYEPSELSSLAYHSGHDK 455
LPP F PTD ELV ++L K + + I +++LY ++P +L A G +
Sbjct: 15 LPPGFR-FHPTDDELVEHYLCRKAAGQRLPV--PIIAEVDLYKFDPWDLPERALF-GARE 70
Query: 456 KYFFT---RLSQPARTVNRQAQGGYWRKTGMPSYVNDKDGDAVATKTSLTYFKKQDPTSK 512
YFFT R NR A GYW+ TG V + G + K +L ++ + P +
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAP--R 127
Query: 513 PEKTHWLMKEYMLLKSQQPNQNDETP------WTLCVLYD 546
KT W+M EY L + + + W LC LY+
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167
>pdb|2XTS|B Chain B, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
pdb|2XTS|D Chain D, Crystal Structure Of The Sulfane Dehydrogenase Soxcd From
Paracoccus Pantotrophus
Length = 205
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 345 LFNIIEIEIPIGLSRQFILRRLDGESHYFITNNDRMRDTLVLTMRTFRRMVLPPTVAAFI 404
+++ + +P G ++ + + + + +N + D VLT F ++VL P F
Sbjct: 89 VYDYVHRSMPFGSAQTLSVDDTYAITAFLLYSNGLVEDDFVLTHENFTQVVL-PNAEGFY 147
Query: 405 PTDTELVTYHLMNK 418
P D + Y L +K
Sbjct: 148 PDDRDQTEYPLFSK 161
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 171 GITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPG 207
G T EGD+S N L+ + +GPG K+ +G+ K G
Sbjct: 412 GWTREGDSSHPNSGLATIMSDGPGGNKWMYVGKHKAG 448
>pdb|1W9X|A Chain A, Bacillus Halmapalus Alpha Amylase
Length = 481
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 171 GITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPG 207
G T EG+ + N L+ + +GPG EK+ +G+ K G
Sbjct: 408 GWTREGNTTHPNSGLATIMSDGPGGEKWMYVGQNKAG 444
>pdb|2GJP|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase,
Crystallized With The Substrate Analogue Acarbose And
Maltose
pdb|2GJR|A Chain A, Structure Of Bacillus Halmapalus Alpha-Amylase Without Any
Substrate Analogues
Length = 485
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 171 GITVEGDNSENNLRLSGQVQEGPGIEKFRIIGEAKPG 207
G T EG+ + N L+ + +GPG EK+ +G+ K G
Sbjct: 412 GWTREGNTTHPNSGLATIMSDGPGGEKWMYVGQNKAG 448
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 296 HISRGQAAFRVLLLINSSE---------NTWEPATLSFTQSRFHVKINSTDVVISE 342
HI GQ AFRV + S E T EP TL+ +++F N VVI +
Sbjct: 644 HIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQ 699
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 296 HISRGQAAFRVLLLINSSE---------NTWEPATLSFTQSRFHVKINSTDVVISE 342
HI GQ AFRV + S E T EP TL+ +++F N VVI +
Sbjct: 644 HIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQ 699
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 300 GQAAFRVLLLINSSENTWEPATLSFTQSRFHVKINSTDVVISEGDLF 346
QAA R L I + E T + ++ + IN D+V+ +GD+F
Sbjct: 67 AQAALRCALEIQQAXQQREEDTPRKERIQYRIGINIGDIVLEDGDIF 113
>pdb|1NC5|A Chain A, Structure Of Protein Of Unknown Function Of Yter From
Bacillus Subtilis
pdb|2D8L|A Chain A, Crystal Structure Of Unsaturated Rhamnogalacturonyl
Hydrolase In Complex With Dglca-Galnac
Length = 373
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 449 YHSGHDKKYF--FTRLSQPARTVNRQAQGGYWRKTGMP 484
Y D++Y RL T+NR ++GG+W K G P
Sbjct: 100 YEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYP 137
>pdb|2GH4|A Chain A, YterD143NDGALA-Rha
Length = 363
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 449 YHSGHDKKYF--FTRLSQPARTVNRQAQGGYWRKTGMP 484
Y D++Y RL T+NR ++GG+W K G P
Sbjct: 90 YEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDGYP 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,921,044
Number of Sequences: 62578
Number of extensions: 641969
Number of successful extensions: 1513
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1498
Number of HSP's gapped (non-prelim): 15
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)