BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008336
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 405 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 460
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 132
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 405 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 460
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 132
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 405 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 460
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 132
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 13 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 72
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 73 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 123
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPPCR F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 15 RGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 73
Query: 405 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMIA 460
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 74 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLV 131
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 19 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 77
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 78 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 128
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 402 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 459
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 73 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 133 KDPEAKDFPW 142
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 72
Query: 402 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 459
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 132
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDE 73
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 74 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 133
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 134 KDPEAKDFPW 143
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 72
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E+ ++ EV+ IS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEK-KNFEVMLISWD 74
Query: 402 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 459
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDE 75
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 76 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 135
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 136 KDPEAKDFPW 145
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 74
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V+ + + LAGKT+ YFSA WCPPCRAF P+LID YK E +++ EV+ IS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAE-SKNFEVMLISWD 74
Query: 402 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 459
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 134
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + +FEV+ +S DE
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDE 75
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 76 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 135
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 136 KDPEAKDFPW 145
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAESKNFEVMLISWD 74
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC P + FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+ G+V V LAGK + YFSA WCPP R F P+LI+ Y K E +++ EVVF + D ++
Sbjct: 16 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE-SKNFEVVFCTWDEEE 74
Query: 405 TSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 459
F +F MPWLA+PF + LS+ F V IP L+ + SG +T AR +
Sbjct: 75 DGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
Protein From Arabidopsis Thaliana
Length = 89
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 463 GAEAYPFTEERMKEIDGQYNEMAKGWPENVKHALHE-HELVLDRCGVYSCDGCDEEGRVW 521
G+ TEER+KEI+ +Y+E+AK WP+ VKH LHE HEL L R VY+CD C+EEG +W
Sbjct: 1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 522 AFSCDECDFCLHPNCALGED 541
++ CDECDF LH CAL ED
Sbjct: 61 SYHCDECDFDLHAKCALNED 80
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401
V+ + + LAGKT+ YFSA WCPP RAF P+LID YK E+ ++ EV+ IS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWD 71
Query: 402 RDQTSFDEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAI-GPSGRTITKEARDMI 459
F +++ MPWLALPF D + L+ F V IP LV + SG IT +AR M+
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMV 131
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC P + FTP L + Y + + +FEV+ +S DE
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 73 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 133 KDPEAKDFPW 142
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+ S +V L SL GK + LYFSASWC PC+ FTP+LAE Y + +FEV+ +S DE+
Sbjct: 14 LLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDEN 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127
+ F Y+ KMPWLA+PF T +L + F V IP L+ ++ +
Sbjct: 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINAD 118
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 348 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 407
G+V + L GKT+ LYFSA WCPPCR F P L + Y+K ++ EVV IS D +++ F
Sbjct: 19 GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDF 77
Query: 408 DEFFKGMPWLALPFGDARKAS-LSRKFKVSGIPMLVAIGP-SGRTITKEARDMI 459
+++ MPWLALPF S L + F V IP L+ I +G I +AR +
Sbjct: 78 HDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENE 74
Query: 245 ESFKRDLGSMPWLALPFKDKSR-EKLARYFELSTLPTLVIIGPDGKTLHSNVAEA--IEE 301
F G MPWLALPF +S +L + F + ++PTL+ I D + A IE+
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 302 HGVGAFPF 309
FP+
Sbjct: 135 PDGANFPW 142
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R D +DSL GK + YFSASWC PC+ FTP L E Y + +FE+I S DE+
Sbjct: 34 LRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEE 93
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127
++ F Y++KMPWL++PF++ + L + + V IP L+ L+ +
Sbjct: 94 EDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNAD 138
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
Query: 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
K + L+GKT+ YFSA WCPPCR F P+L++ Y+K + +++ E++ S D ++
Sbjct: 36 KQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD-SKNFEIILASWDEEE 94
Query: 405 TSFDEFFKGMPWLALPFGDARKA-SLSRKFKVSGIPMLVAIGP-SGRTITKEARDMIAVH 462
F+ ++ MPWL++PF + +L++K+ V IP L+ + +G T+T AR +
Sbjct: 95 DDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQD 154
Query: 463 G-AEAYPFTEE 472
E +P+ +E
Sbjct: 155 PMGEQFPWRDE 165
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254
L GKT+ YFS S FTP+LVE YEK ++FEI+L S D+EE+ F M
Sbjct: 46 LSGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYYAKM 104
Query: 255 PWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVG-AFPFTP 311
PWL++PF +++ E L + + + ++PTL+ + D G T+ + A+ + +G FP+
Sbjct: 105 PWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD 164
Query: 312 E 312
E
Sbjct: 165 E 165
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 10/133 (7%)
Query: 342 VVGKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
+V KN +V ++ L K I+ YFSAHWCPPCR F P L D Y ++ + + E++F+S
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 400 SDRDQTSFDEFFKGM-----PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454
SDR + D+ F+ M WLA+P+ ++++ K+ ++GIP LV + G I+
Sbjct: 69 SDRSE---DDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMN 125
Query: 455 ARDMIAVHGAEAY 467
R + G A+
Sbjct: 126 GRGEVQSLGPRAF 138
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 23 LIRSNGDQVKLD-SLKGK--IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVS 78
L++ N +V + +LK K IG YFSA WC PC+ FTPILA++Y+EL FE+IFVS
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 79 GDEDDEAFKGYF--SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
D ++ Y S WLA+P+ S + + + GIP LVI+ ++G ++S G
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYR-SGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 137 EIIREYGVEGY 147
++ G +
Sbjct: 128 GEVQSLGPRAF 138
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGSM-PWL 257
IG YFS FTP L ++Y +L FEI+ +S D E++ F+ + S WL
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88
Query: 258 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 307
A+P++ + + ++ +P LVI+ DG + N ++ G AF
Sbjct: 89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 19 ARDFLIR-SNGDQVKLDSLKGKI-GLYFSASWCGPCQRFTPIL-AEVYNELSRQGDFEVI 75
A DF I ++G QV L SL+GK+ L F+ASWCG C++ P + +++ + DF +I
Sbjct: 13 APDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALI 72
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL-FKVMGIPHLVILDENGKVLSDG 134
+ DE E F+K + P D + + GI V++D GK+
Sbjct: 73 GIDRDEPLEKVLA-FAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKI---- 127
Query: 135 GVEIIREYGVEGYPFTVERIKEM 157
V++ R Y E + V++I EM
Sbjct: 128 -VKLTRLYNEEEFASLVQQINEM 149
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 340 DFVVGKNGGK-VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
DF + GK V +S L GK ++L F+A WC CR +P I+ +K ++ + + I
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEKDIWLKHKDNA-DFALI 72
Query: 399 SSDRDQTSFDEF-FKGMPWLALPFGDARKASLSRKFKV--SGIPMLVAIGPSGRTITKEA 455
DRD+ F + P G A + K+ + +GI V I G+ I K
Sbjct: 73 GIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGK-IVKLT 131
Query: 456 RDMIAVHGAEAYPFTEERMKEIDGQYNEMAK 486
R + EE + Q NEM K
Sbjct: 132 R-----------LYNEEEFASLVQQINEMLK 151
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
NG V L LKGK I + A+WCGPC+ P L E+ + + + D + +S D++ +A
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKA 77
Query: 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
++ +K + R +D + + GIP ++LD +GK++S
Sbjct: 78 WENMVTKDQLKGIQLHMGTDRTFMDA-YLINGIPRFILLDRDGKIIS 123
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI--SSDRD 403
NG V ++DL GK I + A WC PCR LP L K+++E+ ++ F+ S D++
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPAL----KELEEKYAGKDIHFVSLSCDKN 74
Query: 404 QTSFDEFFKG--MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTIT 452
+ +++ + + L G R + + ++GIP + + G+ I+
Sbjct: 75 KKAWENMVTKDQLKGIQLHMGTDR--TFMDAYLINGIPRFILLDRDGKIIS 123
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 168 QSLRSVLTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK 227
SLRS S + +G+ +S++DL+GK I + + P L E+ EK
Sbjct: 1 MSLRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA 60
Query: 228 GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 287
GK F V +S D +++++ + + + + ++ +P +++ D
Sbjct: 61 GKDIHF--VSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRD 118
Query: 288 GKTLHSNVAEAIEEHGVGAFPFTPEKF 314
GK + +N+ + P T EKF
Sbjct: 119 GKIISANMTRPSD-------PKTAEKF 138
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F WC PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSY-GVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC PC++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F WC PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC PC++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 24 IRSNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
I G+ V L+ KGK L F + C C++ TP L + YN +G F + VS D
Sbjct: 15 IDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG-FTIYGVSTDRR 73
Query: 83 DEAFKGYF--SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+E +K K W V + +D L E + ++G PH++++D GK+++
Sbjct: 74 EEDWKKAIEEDKSYWNQVLLQKDDVKDVL-ESYCIVGFPHIILVDPEGKIVA 124
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 347 GGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTS 406
G V ++D GK +L+ F C CR P L+ Y K++ + +S+DR +
Sbjct: 19 GNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREED 76
Query: 407 FDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456
+ + + W + + + + G P ++ + P G+ + KE R
Sbjct: 77 WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELR 128
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F WCP C+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC C++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 13 SLLSSSARDFLIRS-NGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQG 70
SL + A DF + + NG+ VKL LKG++ + F A+WC PC+ P + N
Sbjct: 2 SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL-NAAXAGK 60
Query: 71 DFEVIFVSGDEDDE-AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGK 129
F + VS DE + A + +F K + D++ R + +L+ G+P ++D +G
Sbjct: 61 PFRXLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKR--VGKLYGTTGVPETFVIDRHGV 118
Query: 130 VL 131
+L
Sbjct: 119 IL 120
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 340 DFVVGK-NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
DF + NG V +SDL G+ +++ F A WCPPCR +P + + +
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL--NAAXAGKPFRXLCV 67
Query: 399 SSDR-DQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
S D + + +EFF+ + DA K + + + +G+P I G + K
Sbjct: 68 SIDEGGKVAVEEFFRKTGFTLPVLLDADK-RVGKLYGTTGVPETFVIDRHGVILKK 122
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F WC P + P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSY-GVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC P ++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F W PC+ P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSY-GVNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +W PC++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F WC C+ P + + YK K ++ +E+V ++ +
Sbjct: 12 NGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 69
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 70 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 114
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC C++ P +A Y QG E+
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG-VEI 59
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 60 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 114
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG--VE 58
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 59 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 114
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246
G S++DL+GK + + F++ + SA L E+Y K +G FEI ISLD +E
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHF 82
Query: 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 284
+K ++PW+ + + + + ++ LP++ ++
Sbjct: 83 WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLV 120
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 28 GDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86
G+ L LKGK+ L F+ L E+YN+ + QG FE+ +S D D+ +
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEIYQISLDGDEHFW 83
Query: 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
K +PW+ V ++ + L+ V +P + +++ N ++ + G
Sbjct: 84 KTSADNLPWVCVRDANGAYSSYI-SLYNVTNLPSVFLVNRNNELSARG 130
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F WC PC+ P + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGP 446
+ F K + P + + VS +P I P
Sbjct: 73 AVHNFXKSY-GVNFPVVLDTDRQVLDAYDVSPLPTTFLINP 112
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC PC++ P A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD 125
+ V+ E A F K + P R LD + V +P +++
Sbjct: 63 VAVNVGESKIAVHN-FXKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLIN 111
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 287
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+
Sbjct: 62 IVAVNVGESKIAVHNFXKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPE 113
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQ 404
+G +SD GKT+L+ A WC PCR +P L + K+ N EVV I+ D RD
Sbjct: 49 DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDP 106
Query: 405 TSFDEFFKGMPWLALPFGDARKASLSRKFKVS----GIPMLVAIGPSG 448
F K L + + +KA + + K G+P V + P G
Sbjct: 107 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 26 SNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
++G KL +GK L A+WC PC++ P L E+ +LS +FEV+ ++ D D
Sbjct: 48 ADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDP 106
Query: 85 AFKGYFSKMPWLAVP--FSDSETR--DKLDELFKVMGIPHLVILDENG 128
F K L F+D + + L + + +G+P V++D G
Sbjct: 107 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 19 ARDFLIRSNGDQVKLDSLKGKI-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77
A DF + VKL G + L F ASWCGPC++ P + + +G F+V+ V
Sbjct: 9 APDFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKG-FQVVAV 67
Query: 78 SGDEDDEAFKGYFSKMPW-LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ D + +++P V F + + + L+ V G P ++D NGKVL
Sbjct: 68 NLDAKTGDAXKFLAQVPAEFTVAF---DPKGQTPRLYGVKGXPTSFLIDRNGKVL 119
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399
DF + G V +SD G + L F A WC PCR P K K + +VV ++
Sbjct: 11 DFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAK--GFQVVAVN 68
Query: 400 SDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453
D +F +P K R + V G P I +G+ + +
Sbjct: 69 LDAKTGDAXKFLAQVP-AEFTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQ 121
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
NG ++ +SDL GK + L F W P + P + + YK K ++ +E+V ++ +
Sbjct: 15 NGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFK--SQGVEIVAVNVGESKI 72
Query: 406 SFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
+ F K + P + + VS +P I P G+ +
Sbjct: 73 AVHNFMKSYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVV 117
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +W P ++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV-FISSDRDQTSFDEFFKGMP 415
G+ +L+F WCPPC+ LP+ Y + L V ++S+++Q ++F K
Sbjct: 34 GQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANK 93
Query: 416 WLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475
L P K L +++ + IP + G + + P T E++K
Sbjct: 94 -LTFPIVLDSKGELXKEYHIITIPTSFLLNEKGE-----------IEKTKIGPXTAEQLK 141
Query: 476 E 476
E
Sbjct: 142 E 142
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 22 FLIRS-NGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYN-ELSRQGDFEVIFVSG 79
FL ++ G+ + + + K L+F SWC PC++ P Y+ S + +
Sbjct: 18 FLXKTIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN 77
Query: 80 DEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
E ++ F K L P +++ +L + + ++ IP +L+E G++
Sbjct: 78 SEQNQQVVEDFIKANKLTFPIV-LDSKGELXKEYHIITIPTSFLLNEKGEI 127
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 342 VVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS- 400
++G +G +SD GK + L F A WC C A LP D + KE + V+ + S
Sbjct: 7 LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLP---DTDEIAKEAGDDYVVLTVVSP 63
Query: 401 ----DRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
++ + F ++KG+ + LP L + V P I G+ +
Sbjct: 64 GHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLV 118
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 38/132 (28%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV---- 77
L+ +G +L KGK + L F ASWC C P E+ E D+ V+ V
Sbjct: 7 LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVVSPG 64
Query: 78 -SGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
G++ + FK ++ + + +P V++D +GK+L
Sbjct: 65 HKGEQSEADFKNWYKGLDYKNLP----------------------VLVDPSGKLL----- 97
Query: 137 EIIREYGVEGYP 148
YGV YP
Sbjct: 98 ---ETYGVRSYP 106
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D + D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 69
Query: 79 GDED 82
D++
Sbjct: 70 IDQN 73
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 60
Query: 79 GDED 82
D++
Sbjct: 61 IDQN 64
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 23 LIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80
+I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 81 ED 82
++
Sbjct: 62 QN 63
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL ++ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 414
A IL+ F A WC PC+ P L D E L V ++ D++ + ++ +G+
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDDI---ADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 75
Query: 415 PWLAL 419
P L L
Sbjct: 76 PTLLL 80
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ ++ QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
+ +YF ASWCGPCQ +P++ N S + +V+ + D + K Y
Sbjct: 28 VLVYFWASWCGPCQLMSPLINLAANTYSDR--LKVVKLEIDPNPTTVKKY 75
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 414
A + +L+YF A WC PC+ P + A +R L+VV + D + T+ ++ +G+
Sbjct: 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNPTTVKKYKVEGV 80
Query: 415 PWLALPFGD 423
P L L G+
Sbjct: 81 PALRLVKGE 89
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D +K G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I + D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 12/81 (14%)
Query: 330 LESVLVSGDLDFVVGK-----NGGKVPVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAY 383
LE L + +++ +VGK P+ AG K ++L WC PC+A PK Y
Sbjct: 4 LELALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK----Y 59
Query: 384 KKIKERNESLEVVFISSDRDQ 404
+K+ E E L+V+F+ D +Q
Sbjct: 60 EKLAE--EYLDVIFLKLDCNQ 78
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 21 DFLIR-SNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79
DFL+ G V ++ + F ASWC C+ P L V E F VI
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEETGVP--FYVISREP 70
Query: 80 DEDDEAFKGYFSKMP-WLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ E Y P ++ + SD + ++ FKV+G P ++D GKV++
Sbjct: 71 RDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVA 124
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++++ ++ +G + F A WCGPC+ P+L E+ E+ + +++ + DE+
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDK--LKIVKIDVDEN 60
Query: 83 DEAFKGY 89
E Y
Sbjct: 61 QETAGKY 67
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGMPWL 417
+L F A WC PC+ P L + +E + L++V I D +Q + ++ +P L
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEELD---QEMGDKLKIVKIDVDENQETAGKYGVMSIPTL 75
Query: 418 ALPFGDARKASLSRKFK 434
L D S FK
Sbjct: 76 -LVLKDGEVVETSVGFK 91
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER 389
+G + L GK ++ F A WCPPCR+ +P + K R
Sbjct: 23 DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASR 66
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93
SLKGK + F A+WC PC+ P +V + +G F + ++ +E K Y K
Sbjct: 31 SLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRG-FTFVGIAVNEQLPNVKNY-XKT 88
Query: 94 PWLAVPFSDSETRDKLDELFK------VMGIPHLVILDENGKV 130
+ P + +L F + GIP ++D +G V
Sbjct: 89 QGIIYPVXXATP--ELIRAFNGYIDGGITGIPTSFVIDASGNV 129
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 351 PVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
P+ AG K ++L WC PC+A PK Y+K+ E E L+V+F+ D +Q
Sbjct: 18 PIVKAAGDKPVVLDMFTQWCGPCKAMAPK----YEKLAE--EYLDVIFLKLDCNQ 66
>pdb|3EWL|A Chain A, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
pdb|3EWL|B Chain B, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
Length = 142
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV--YNELSRQGDFEV 74
A DF + +GD + LK + L+F C C++F + AE+ + E G V
Sbjct: 7 AADFTYVTVHGDNSRXSRLKAQYTXLFFYDPDCSNCRKFEKLFAEIPAFVEXVENGTLRV 66
Query: 75 IFVSGDEDDE--AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV-L 131
+ + DE+ E A K + W+ + R + +L+ + P + +LD +V L
Sbjct: 67 LAIYPDENREEWATKAVYXPQGWIVGWNKAGDIRTR--QLYDIRATPTIYLLDGRKRVIL 124
Query: 132 SDGGVEIIREY 142
D E + +Y
Sbjct: 125 KDTSXEQLIDY 135
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 24 IRSNGD-QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
++ +GD + L+ K K+ + F A+WCGPC+ P+ + ELS + ++ IFV D
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPL----FKELSEK--YDAIFVKVDV 71
Query: 82 D---DEAFKGYFSKMP 94
D + A K S MP
Sbjct: 72 DKLEETARKYNISAMP 87
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 37/108 (34%)
Query: 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 396
GDL+ ++ ++ K+ V D F A WC PC+ P KE +E + +
Sbjct: 22 GDLESLLEQHKNKLVVVD---------FFATWCGPCKTIAPLF-------KELSEKYDAI 65
Query: 397 FISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 444
F+ D D+ +RK+ +S +P +AI
Sbjct: 66 FVKVDVDKLE---------------------ETARKYNISAMPTFIAI 92
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 24 IRSNGD-QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
++ +GD + L+ K K+ + F A+WCGPC+ P+ + ELS + ++ IFV D
Sbjct: 9 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPL----FKELSEK--YDAIFVKVDV 62
Query: 82 D---DEAFKGYFSKMP 94
D + A K S MP
Sbjct: 63 DKLEETARKYNISAMP 78
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 37/108 (34%)
Query: 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV 396
GDL+ ++ ++ K+ V D F A WC PC+ P KE +E + +
Sbjct: 13 GDLESLLEQHKNKLVVVD---------FFATWCGPCKTIAPLF-------KELSEKYDAI 56
Query: 397 FISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAI 444
F+ D D+ +RK+ +S +P +AI
Sbjct: 57 FVKVDVDKLE---------------------ETARKYNISAMPTFIAI 83
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin
C35a
Length = 128
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 18 SARDFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
S D +I D D LK G I + F A WCGP + PIL E+ +E QG V
Sbjct: 19 SHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVA 76
Query: 76 FVSGDED 82
++ D++
Sbjct: 77 KLNIDQN 83
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVY 63
NG H ++ + +F N ++ K + K I + F A WCGPC+ PIL
Sbjct: 8 NGKVIHLTKAEFLAKVYNF--EKNPEEWKYEGDKPAI-VDFYADWCGPCKMVAPIL---- 60
Query: 64 NELSRQGDFEVIFVSGDEDDE 84
+EL+++ D +++ D + E
Sbjct: 61 DELAKEYDGQIVIYKVDTEKE 81
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCGPC+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 27 FWATWCGPCKMIAPVLEELAAD--YEGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 83
Query: 103 SETRDKL 109
+ DK+
Sbjct: 84 GQPVDKV 90
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96
F A+WCGPC+ P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 25 FYATWCGPCKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 75
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96
F A+WCGPC+ P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 31 FYATWCGPCKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 81
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 36.6 bits (83), Expect = 0.038, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A+WCGPC+ P+L E+ E R D V + D + E + +
Sbjct: 32 FWATWCGPCKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 75
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT 405
+G V +DL GK L+ F CP C + +PK+I K +N +V+ ++ D
Sbjct: 17 HGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPI 74
Query: 406 -SFDEFFK--GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451
S ++ K G+P+ + DA KA + + F P V IG G +
Sbjct: 75 ESVRQYVKDYGLPFTVMY--DADKA-VGQAFGTQVYPTSVLIGKKGEIL 120
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 244
G+ +S +DL+GK + F S P++++ K K V +D E
Sbjct: 18 GKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV 77
Query: 245 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297
+ +D G +P+ + DK+ + + F PT V+IG G+ L + V E
Sbjct: 78 RQYVKDYG-LPFTVMYDADKA---VGQAFGTQVYPTSVLIGKKGEILKTYVGE 126
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 36.2 bits (82), Expect = 0.045, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A+WCGPC+ P+L E+ E R D V + D + E + +
Sbjct: 37 FWATWCGPCKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 80
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ IL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCG C+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGP + PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE- 81
L +++G V LD F A+WCGPC+ +P L E+ + + + V+ V DE
Sbjct: 20 LTKASGKLVVLD---------FFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDEC 68
Query: 82 DDEAFKGYFSKMP 94
+D A + S MP
Sbjct: 69 EDIAMEYNISSMP 81
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
++ +GK ++L F A WC PC+ PKL++ + + VV + D D+
Sbjct: 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDE 67
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 35.4 bits (80), Expect = 0.077, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE- 81
L +++G V LD F A+WCGPC+ +P L E+ + + + V+ V DE
Sbjct: 15 LTKASGKLVVLD---------FFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDEC 63
Query: 82 DDEAFKGYFSKMP 94
+D A + S MP
Sbjct: 64 EDIAMEYNISSMP 76
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
+GK ++L F A WC PC+ PKL++ + + VV + D D+
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-----NVVVLKVDVDE 62
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 44 FSASWCGPCQRFTPILAEVYNE 65
F A WCGPC+ F PI AE E
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAE 83
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
G + + F A WCGPC+ P L E+ E + G V V+ D++ E Y
Sbjct: 21 GLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAY 70
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWCGPC+ P A++ +L V+F+ D D+
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDE 79
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ---TSFDEFFKGMP 415
+++ F+A WC PCR P D KK+ V+F+ D D+ + D + MP
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLP------NVLFLKVDTDELKSVASDWAIQAMP 93
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus
Thermophilus
Length = 172
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 339 LDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKER-NESLEVV 396
+DF + G V +S K +LL+F CP C L L AY+K+ + E ++V+
Sbjct: 17 VDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVI 76
Query: 397 FISSDRDQ 404
F+S D ++
Sbjct: 77 FVSVDPER 84
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 35.4 bits (80), Expect = 0.096, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCG-PCQRFTPILAEVYNELSRQGDFEVIFV 77
D +I D D LK G I + F A WCG PC+ PIL E+ +E QG V +
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAKL 59
Query: 78 SGDED 82
+ D++
Sbjct: 60 NIDQN 64
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 336 SGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV 395
+ DL+ ++ +N G++ V D F A WC PCR PK+ K+I EV
Sbjct: 7 AADLEKLINENKGRLIVVD---------FFAQWCGPCRNIAPKVEALAKEIP------EV 51
Query: 396 VFISSDRDQ 404
F D DQ
Sbjct: 52 EFAKVDVDQ 60
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMP 94
F A WCGPC+ P + + E+ + E V D+++EA Y + MP
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMP 74
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 21 DFLIRSNGD-QVKLDSLKGKIGLY---FSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
D ++ NG + L+ +K GL F A+WCGPCQR IL + D I
Sbjct: 3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIA---EANKDVTFIK 59
Query: 77 VSGDEDDEAFKGY-FSKMPWL 96
V D++ A Y S +P L
Sbjct: 60 VDVDKNGNAADAYGVSSIPAL 80
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
F A WCGPC+ +PIL E+ + G +V+ V+ DE
Sbjct: 57 FFAPWCGPCRLVSPILEELARD--HAGRLKVVKVNVDE 92
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P L E+ +S +V+F+ D D+
Sbjct: 27 FYATWCGPCKMIAPKLEELSQSMS-----DVVFLKVDVDE 61
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESL-EVVFISSDRDQ 404
+++ K +++ F A WC PC+ PKL +E ++S+ +VVF+ D D+
Sbjct: 15 LNEAGNKLVVIDFYATWCGPCKMIAPKL-------EELSQSMSDVVFLKVDVDE 61
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
++ ++ A K +++ F+A WC PCR P D KK VF+ D D+
Sbjct: 26 QIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP------NAVFLKVDVDE 75
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 44 FSASWCGPCQRFTPILAEV 62
F+ASWCGPC+ P+ A++
Sbjct: 41 FTASWCGPCRIMAPVFADL 59
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
D AG K +++ FSA WC PC+ P + + E+ + V+F+ D D
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP----FFHSLSEKYSN--VIFLEVDVD 60
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFI 398
+G + ++++ G ++L+F A WCP C ++ L+D ++ E+ + V+ I
Sbjct: 26 DGEVISLNNVGGDVVILWFMAAWCPSC-VYMADLLD---RLTEKYREISVIAI 74
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 12 QSLLSSSARDFLIRSNGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPI---LAEVYNELS 67
+ +L A L +G+ + L+++ G + L+F A+WC C + L E Y E+S
Sbjct: 11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREIS 70
Query: 68 RQG-DF---EVIFVSG--------DEDDEAFKGYFSKM---PWLAVPFSDSETRDKLDEL 112
DF E + G + E F+ + + W+ V S L E
Sbjct: 71 VIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGS-----LVEK 125
Query: 113 FKVMGIPHLVILDENGKVLSDG 134
F V I ++VI+D++ VL G
Sbjct: 126 FNVRSIDYIVIMDKSSNVLYAG 147
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
AGK +++ F+A WC PCR P + KK VF+ D D+
Sbjct: 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP------GAVFLKVDVDE 77
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 44 FSASWCGPCQRFTPILAE 61
F+ASWCGPC+ P+ AE
Sbjct: 43 FTASWCGPCRFIAPVFAE 60
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 44 FSASWCGPCQRFTPILAE 61
F+ASWCGPC+ P+ AE
Sbjct: 35 FTASWCGPCRVIAPVFAE 52
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKK 385
GK +++ F+A WC PCR P + KK
Sbjct: 28 GKLVIIDFTASWCGPCRVIAPVFAEYAKK 56
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
F A WCGPC+ PIL E+ E + G + V+ D++ E
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPE 96
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
F A WCGPC+ PIL E+ E + G + V+ D++ E
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPE 96
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 66 LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP---------FSDSETRDKLDELFKVM 116
+ R+ D ++I +S D E F+ YF+ P LAVP ++ RD LD + +
Sbjct: 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTV 294
Query: 117 GIPHLVILDENGKVL-----SDGGVEIIREYGVEG 146
H +E G +L D + +R+ +EG
Sbjct: 295 LQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEG 327
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 66 LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP---------FSDSETRDKLDELFKVM 116
+ R+ D ++I +S D E F+ YF+ P LAVP ++ RD LD + +
Sbjct: 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTV 294
Query: 117 GIPHLVILDENGKVL-----SDGGVEIIREYGVEG 146
H +E G +L D + +R+ +EG
Sbjct: 295 LQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEG 327
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEV 62
L+ N D++ D K + LY+ A WCG C+R P E+
Sbjct: 363 LVGKNHDEIVNDPKKDVLVLYY-APWCGHCKRLAPTYQEL 401
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD 403
+L F A WC C+ P+ + A + + E+N +L + + ++D
Sbjct: 34 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD 77
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 334 LVSGDLDFVVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 391
L G++ + K +S+ + GK +L FSA WC PC+ P Y ++ E
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAP----YYIELSENYP 76
Query: 392 SLEVVFISSD 401
SL + I D
Sbjct: 77 SLMFLVIDVD 86
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEV 62
S GKI L FSA WCGPC++ P E+
Sbjct: 43 SRDGKIVLANFSARWCGPCKQIAPYYIEL 71
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 26/94 (27%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99
I LYF SW PC+ + + NE S V F+S D D+ +
Sbjct: 24 IVLYFHTSWAEPCKALKQVFEAISNEPSNS---NVSFLSIDADENS-------------- 66
Query: 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133
++ ELF++ +P+ +I+ G +L +
Sbjct: 67 --------EISELFEISAVPYFIII-HKGTILKE 91
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 27/97 (27%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 417
K I+LYF W PC+A L ++ I + V F+S D D+ S
Sbjct: 22 KLIVLYFHTSWAEPCKA----LKQVFEAISNEPSNSNVSFLSIDADENS----------- 66
Query: 418 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454
+S F++S +P + I TI KE
Sbjct: 67 ----------EISELFEISAVPYFIIIHKG--TILKE 91
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
K I++ F+A WCPPC+ P + KK V F+ D D+
Sbjct: 27 KLIVVDFTASWCPPCKMIAPIFAELAKKFP------NVTFLKVDVDE 67
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWC PC+ PI AE+ + V F+ D D+
Sbjct: 33 FTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE 67
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 10 DIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQ 69
++Q + SS ++F++ S + + + F A WCGPC+ P++ E+ E S
Sbjct: 1 EVQDVNDSSWKEFVLES----------EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-- 48
Query: 70 GDFEVIFVSGDE 81
G V ++ DE
Sbjct: 49 GKIAVYKLNTDE 60
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++++ ++ +G + F A WCGP + P+L E+ E+ + +++ + DE+
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDEN 60
Query: 83 DEAFKGY 89
E Y
Sbjct: 61 QETAGKY 67
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++++ ++ +G + F A WCGP + P+L E+ E+ + +++ + DE+
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDEN 60
Query: 83 DEAFKGY 89
E Y
Sbjct: 61 QETAGKY 67
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D +D
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVND 61
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCG C+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 26 FWATWCGSCKMIAPVLEELAAD--YEGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 82
Query: 103 SETRDKL 109
+ DK+
Sbjct: 83 GQPVDKV 89
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 351 PVSDLAG-KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
P+ AG K ++L WC P +A PK Y+K+ E E L+V+F+ D +Q
Sbjct: 17 PIVKAAGDKPVVLDMFTQWCGPSKAMAPK----YEKLAE--EYLDVIFLKLDCNQ 65
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A WCGPC+ PI+ E+ E +G +V+ V+ DE+ Y +P L + F +
Sbjct: 26 FWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVDENPNTAAQYGIRSIPTLLL-FKN 82
Query: 103 SETRDKL 109
+ D+L
Sbjct: 83 GQVVDRL 89
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAV 98
I + F+ SWC PC++ P E+ +++ +GD ++ ++ ++ +P LA+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQM--EGDIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 99 PFSDSETRD 107
F D R+
Sbjct: 78 -FVDGMIRE 85
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK--MPWLAV- 98
L F ASWC P L + E + +F + +S D D EA++ K + W V
Sbjct: 38 LNFWASWCDPQPEANAELKRLNKEYKKNKNFAXLGISLDIDREAWETAIKKDTLSWDQVC 97
Query: 99 PFS--DSETRDKLDELFKVMGIPHLVILDENGKVLS 132
F+ SET + + ++ +P ++L GK+L+
Sbjct: 98 DFTGLSSETAKQ----YAILTLPTNILLSPTGKILA 129
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.55, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAE 61
G + + F A+WCGPC+ P+L E
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEE 41
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAE 61
G + + F A+WCGPC+ P+L E
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEE 41
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
F A WCGPC+ P++ E+ E S G V ++ DE
Sbjct: 24 FWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDE 59
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
Length = 109
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96
F A+WCGP + P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 31 FYATWCGPSKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 81
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 44 FSASWCGPCQRFTPILAEVYNELS 67
F+A+WCGPC+ P+ + N+ +
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYA 54
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 25/84 (29%)
Query: 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 418
T+LL F A WC C+ F P+ +K+ + + V I
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI-------------------- 75
Query: 419 LPFGDARKAS-LSRKFKVSGIPML 441
DA AS L+ KF VSG P +
Sbjct: 76 ----DATSASMLASKFDVSGYPTI 95
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96
K + L F A WCG C++F P ++E I + ++D P +
Sbjct: 34 KDTVLLEFYAPWCGHCKQFAP-------------EYEKIASTLKDND----------PPI 70
Query: 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
AV D+ + L F V G P + IL + V DG
Sbjct: 71 AVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYDG 108
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A+WCGP + P+L E+ E R D V + D + E + +
Sbjct: 34 FWATWCGPSKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 77
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 44 FSASWCGPCQRFTPILAEVYNELS 67
F+A+WCGPC+ P+ + N+ +
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYA 54
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCG C+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 27 FWATWCGTCKMIAPVLEELAADY--EGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 83
Query: 103 SETRDKL 109
+ DK+
Sbjct: 84 GQPVDKV 90
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 91 SKMPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLSDGGVEIIREYGVEG 146
+ +P + VP S T + LD LF ++ G+P + N K + G+ G++
Sbjct: 90 THLPVIGVPVKTS-TLNGLDSLFSIVQMPGGVPVATVAINNAK---NAGILAASILGIK- 144
Query: 147 YPFTVERIKEMKEQEERAKREQSLR 171
YP ++KE KE+ +R E++ R
Sbjct: 145 YPEIARKVKEYKERMKREVLEKAQR 169
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCGPC+R P E ++ ++F+ D D+
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDE 67
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 44 FSASWCGPCQRFTPILAE 61
F A+WCGPC+ P+L E
Sbjct: 24 FWAAWCGPCRMMAPVLEE 41
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A WC PC+ PIL E+ E +G V + DE+ + Y
Sbjct: 26 FWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPKTAXRY 69
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A WC PC+ PIL E+ E +G V + DE+ + Y
Sbjct: 25 FWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPKTAXRY 68
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 44 FSASWCGPCQRFTPILAE 61
F A+WCGPC+ P+L E
Sbjct: 24 FWAAWCGPCRMMAPVLEE 41
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 11 IQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
+ L S+S D + S V +D F A+WCGPC+ P++ + + S
Sbjct: 9 VTQLKSASEYDSALASGDKLVVVD---------FFATWCGPCKMIAPMIEKFAEQYS--- 56
Query: 71 DFEVIFVSGDED---DEAFKGYFSKMPWL 96
+ F D D D A K S MP L
Sbjct: 57 --DAAFYKLDVDEVSDVAQKAEVSSMPTL 83
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 44 FSASWCGPCQRFTP 57
F A WCGPCQ F P
Sbjct: 28 FYAPWCGPCQNFAP 41
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 11 IQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
+ L S+S D + S V +D F A+WCGPC+ P++ + + S
Sbjct: 2 VTQLKSASEYDSALASGDKLVVVD---------FFATWCGPCKMIAPMIEKFAEQYS--- 49
Query: 71 DFEVIFVSGDED---DEAFKGYFSKMPWL 96
+ F D D D A K S MP L
Sbjct: 50 --DAAFYKLDVDEVSDVAQKAEVSSMPTL 76
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410
+ L GK +L+F WCP C A P L ++ N ++ V I++ D + F
Sbjct: 20 ASLQGKPAVLWFWTPWCPFCNAEAPSL----SQVAAANPAVTFVGIATRADVGAMQSF 73
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 86 FKGYFSKMPWL-AVPFSDSETRDKLDELFKVMGIP---HLVILDENGKVLSDGGVEIIRE 141
F+G+ K+ L P S + ++ F +GIP HL + E G+V + +R
Sbjct: 18 FQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSV-EPGQV--GAAIAGVRA 74
Query: 142 YGVEGYPFTVER----IKEMKEQEERAKREQSLRSVLTSHSR-----------------D 180
G+ G T+ I + E +E A+R ++ +++ + R +
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINNDGRLVGYNTDGLGYVQALEEE 134
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKGESFEIVLIS 239
I+ DG++I V G G+YFS+ S A + R VE E+L +G+ S
Sbjct: 135 MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS 194
Query: 240 LDDEE 244
L + E
Sbjct: 195 LAEAE 199
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPK 378
G + VV KN ++ + D K +L+ F A WC C+A PK
Sbjct: 7 GPVTVVVAKNYNEIVLDDT--KDVLIEFYAPWCGHCKALAPK 46
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGP + P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WC C+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 334 LVSGDLDFVVGKNGGKVPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNE 391
L G++ + K +S+ + GK +L FSA WC P R P Y ++ E
Sbjct: 21 LAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP----YYIELSENYP 76
Query: 392 SLEVVFISSD 401
SL + I D
Sbjct: 77 SLMFLVIDVD 86
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 413
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 25 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKD-GDFQKWYAG 83
Query: 414 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448
+ + LP ++++ +S P IG G
Sbjct: 84 LNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 118
>pdb|3HCZ|A Chain A, The Crystal Structure Of A Domain Of Possible
Thiol-disulfide Isomerase From Cytophaga Hutchinsonii
Atcc 33406
Length = 148
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP---WLAV 98
L+F S CG CQ+ TP L + + + +R +V + + DE + + WL V
Sbjct: 36 LFFWDSQCGHCQQETPKLYDWWLK-NRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNV 94
Query: 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
DS+ + + P L +LD+N +++
Sbjct: 95 --RDSKNHTDFKITYDIYATPVLYVLDKNKVIIA 126
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 413
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 24 KPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKD-GDFQKWYAG 82
Query: 414 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448
+ + LP ++++ +S P IG G
Sbjct: 83 LNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDG 117
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVV----FISSDRDQTSFDEFFKG 413
K L+ F A WCP C + L + + K + +L V F+ +D F +++ G
Sbjct: 39 KPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKD-GEFQKWYAG 97
Query: 414 MPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448
+ + LP ++++ +S P IG G
Sbjct: 98 LNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDG 132
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPI---LAEVYNE 65
SS L+ N + V D K + + F A WCG C++ PI L E Y +
Sbjct: 5 SSGPVKVLVGKNFEDVAFDE-KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD 56
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS-GDEDDEA--FKGYF 90
+ KGK+ L ASWC PC P+L EL + F+++ ++ D D A F G +
Sbjct: 39 AFKGKVSLVNVWASWCVPCHDEAPLL----TELGKDKRFQLVGINYKDAADNARRFLGRY 94
Query: 91 SKMPWLAVPFS----DSETRDKLDELFKVMGIPHLVILDENGKVL 131
PF D+ R ++ + V G+P ++ G ++
Sbjct: 95 GN------PFGRVGVDANGRASIE--WGVYGVPETFVVGREGTIV 131
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGP + P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 25/84 (29%)
Query: 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLA 418
T+LL F A WC C+ F P+ Y+KI I D+D P +
Sbjct: 34 TVLLEFYAPWCGHCKQFAPE----YEKIAN---------ILKDKD-----------PPIP 69
Query: 419 LPFGDARKAS-LSRKFKVSGIPML 441
+ DA AS L+ +F VSG P +
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTI 93
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96
K + L F A WCG C++F P ++ N L K P +
Sbjct: 32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILK-----------------------DKDPPI 68
Query: 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKE 156
V D+ + L F V G P + IL + G+ + G E V +++E
Sbjct: 69 PVAKIDATSASVLASRFDVSGYPTIKIL-KKGQAVDYEGSRTQEE--------IVAKVRE 119
Query: 157 MKEQEERAKREQSLRSVLTSHSRDFVIS 184
+ + + E +L VLT + D V++
Sbjct: 120 VSQPDWTPPPEVTL--VLTKENFDEVVN 145
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQ 69
L + N D+V D+ I + F A WCG C++ P + ELS++
Sbjct: 135 LTKENFDEVVNDA--DIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 179
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 33 LDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91
L SLK + + A+WCGPC++ P ++ Y + ++G + + ++ D D G F
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEXPAXSKWY-KAQKKGSVDXVGIALDTSDNI--GNFL 75
Query: 92 KMPWLAVP 99
K ++ P
Sbjct: 76 KQTPVSYP 83
>pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 412
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 174 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 226
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 227 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282
K FE +L+ +ES K++ G + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKE-GKEIY-DVEMKESMREQL-----LEKLPEIV 283
Query: 283 IIGPDGKTLHSNVAEAI 299
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPI---LAEVYNE 65
L+ N + V D K + + F A WCG C++ PI L E Y +
Sbjct: 254 LVGKNFEDVAFDE-KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD 298
>pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 433
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 174 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 226
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 227 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282
K FE +L+ +ES K++ G + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKE-GKEIY-DVEMKESMREQL-----LEKLPEIV 283
Query: 283 IIGPDGKTLHSNVAEAI 299
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
F A+WCGPC++ P L + E + E++ ++ DE+
Sbjct: 30 FWAAWCGPCRQIAPSLEAIAAEYGDK--IEIVKLNIDEN 66
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 358 KTILLYFSAHWCPPCRAFLPKL 379
K +L+ F A WC PCR P L
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSL 45
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 44 FSASWCGPCQRFTPILAEVYNE 65
F A WCGPC+ P++ E+ E
Sbjct: 26 FWAPWCGPCRIIAPVVDEIAGE 47
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 44 FSASWCGPCQRFTPI---LAEVYNEL 66
FSA+WCGPC+ P L+E Y+ +
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSNV 52
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 354 DLAG-KTILLYFSAHWCPPCRAFLP 377
D AG K +++ FSA WC PC+ P
Sbjct: 16 DAAGDKLVVVDFSATWCGPCKMIKP 40
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGP + P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 39 KIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
K+ + F A+WCGPC+ P L ++ Q +V FV D D+
Sbjct: 32 KLVIDFYATWCGPCKMMQPHLTKLI-----QAYPDVRFVKCDVDE 71
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGP + P + + S VIF+ D DD
Sbjct: 23 QEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 72
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ 404
++ ++ A K +++ F+A WC P R P D KK VF+ D D+
Sbjct: 29 QIEEANTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFP------NAVFLKVDVDE 78
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 44 FSASWCGPCQRFTPILAEV 62
F+ASWCGP + P+ A++
Sbjct: 44 FTASWCGPSRIMAPVFADL 62
>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
Length = 154
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 40 IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 98
IGL+F+ S WC C ++ +++ + +F+ F G M +
Sbjct: 50 IGLFFTGSDWCMWC-------IKMQDQILQSSEFK-----------HFAGVHLHMVEVDF 91
Query: 99 PFSD---SETRDKLDEL---FKVMGIPHLVILDENGKVLSDGGVE 137
P + E R K EL +KV G P LV +D GK L+ G E
Sbjct: 92 PQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFE 136
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL 417
K LL F A+WC CRA L K + K + EVV I D +FD + L
Sbjct: 30 KPTLLVFGANWCTDCRA-LDKSLRNQKNTALIAKHFEVVKI----DVGNFDRNLE----L 80
Query: 418 ALPFGDARKASLSRKFKVSGIPMLVAIGPSGR 449
+ +GD + GIP +V + G+
Sbjct: 81 SQAYGDPIQ---------DGIPAVVVVNSDGK 103
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGP--------------CQRFTPILAEVYN 64
D +I D D LK G I + F A WCGP C+ PIL E+ +
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 65 ELSRQGDFEVIFVSGDED 82
E QG V ++ D++
Sbjct: 63 E--YQGKLTVAKLNIDQN 78
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+ CGPC+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 26 FWATACGPCKMIAPVLEELAADY--EGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 82
Query: 103 SETRDKL 109
+ DK+
Sbjct: 83 GQPVDKV 89
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
F A+WCGPC+ P+ ++ + + GD +V F D D+++
Sbjct: 40 FWATWCGPCKMIGPVFEKISD--TPAGD-KVGFYKVDVDEQS 78
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 375 FLPKLIDAYKKIKERNESLEVVFI 398
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 375 FLPKLIDAYKKIKERNESLEVVFI 398
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 375 FLPKLIDAYKKIKERNESLEVVFI 398
F KL D KKIK+RNE+LEV +I
Sbjct: 663 FQDKLEDISKKIKQRNENLEVPYI 686
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 375 FLPKLIDAYKKIKERNESLEVVFI 398
F KL D KKIK+RNE+LEV +I
Sbjct: 660 FQDKLEDISKKIKQRNENLEVPYI 683
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 375 FLPKLIDAYKKIKERNESLEVVFI 398
F KL D KKIK+RNE+LEV +I
Sbjct: 1030 FQDKLEDISKKIKQRNENLEVPYI 1053
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WC + PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 357 GKTILLYFSAHWCPPCRAFLP---KLIDAYKK 385
GK +L+ F A WCP CR P +L+ ++ K
Sbjct: 41 GKIVLVNFWASWCPYCRDEXPSXDRLVKSFPK 72
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 10 DIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQ 69
++Q + SS ++F++ S + + + F A WCGP + P++ E+ E S
Sbjct: 1 EVQDVNDSSWKEFVLES----------EVPVMVDFWAPWCGPSKLIAPVIDELAKEYS-- 48
Query: 70 GDFEVIFVSGDE 81
G V ++ DE
Sbjct: 49 GKIAVYKLNTDE 60
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 44 FSASWCGPCQRFTP 57
F A WCG CQR TP
Sbjct: 42 FYAPWCGHCQRLTP 55
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 27 NGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G +SL GK L+F A WC CQ P++ +V + + + V+G + A
Sbjct: 14 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQV---AASHPEVTFVGVAGLDQVPA 70
Query: 86 FKGYFSKMP 94
+ + +K P
Sbjct: 71 MQEFVNKYP 79
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 355 LAGKTILLYFSAHWCPPCRAFLP 377
L GK +L+F A WCP C+ P
Sbjct: 23 LLGKPAVLWFWAPWCPTCQGEAP 45
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 324 KEESQTLESVLVSGDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAY 383
K+E TL VL + D V+ N K +L+ A WC PC + P Y
Sbjct: 1 KKEDVTL--VLTEENFDEVIRNN-----------KLVLVDCWAEWCAPCHLYEP----IY 43
Query: 384 KKIKERNESLEVVF--ISSDRDQTSFDEF 410
KK+ E+ + + VF ++ D +Q D++
Sbjct: 44 KKVAEKYKG-KAVFGRLNVDENQKIADKY 71
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 355 LAGKTILLYFSAHWCPPCRAFLP 377
L GK +L+F A WCP C+ P
Sbjct: 37 LLGKPAVLWFWAPWCPTCQGEAP 59
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 27 NGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G +SL GK L+F A WC CQ P++ +V + + + V+G + A
Sbjct: 28 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQV---AASHPEVTFVGVAGLDQVPA 84
Query: 86 FKGYFSKMP 94
+ + +K P
Sbjct: 85 MQEFVNKYP 93
>pdb|2FHX|A Chain A, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
pdb|2FHX|B Chain B, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
Length = 246
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 63 YNELSRQGDFEVIFVSGDEDDEAFKGYFSKM-----PWLAVPFSDSETRDKLDELFKVMG 117
YN + + D +V FV D D + +KM ++ PF + T+ +D + K M
Sbjct: 8 YNLTATKIDSDV-FVVTDRDFYSSNVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMK 66
Query: 118 IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE---RIKEMKEQEERA----KREQSL 170
+V ++ + + GG EI ++ G E + + R++E K+ +A K E
Sbjct: 67 PKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLK 126
Query: 171 RSVLTSH 177
R +L+SH
Sbjct: 127 RRILSSH 133
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
FS C CQ+ TP+L E+ L+ + F +V +E+ F+ + K + F D
Sbjct: 29 FSRKNCHVCQKVTPVLEEL--RLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDG 86
Query: 104 ETRDK 108
E + K
Sbjct: 87 EYKGK 91
>pdb|3VIU|A Chain A, Crystal Structure Of Purl From Thermus Thermophilus
Length = 725
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 308 PFTPEKFAELAE-IQRAKEESQTLESVLVSGDLDFVVGKNGGKVP 351
P TPE + ELAE I KE S+ L +VSG++ G ++P
Sbjct: 492 PETPEGYHELAETIAGLKEASEALGVPVVSGNVSLYNESGGKRIP 536
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCG + P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 27 FWATWCGTSKMIAPVLEELAAD--YEGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 83
Query: 103 SETRDKL 109
+ DK+
Sbjct: 84 GQPVDKV 90
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
SS ++ D + +D K + + F A WCG C++ PI + + Q D +
Sbjct: 5 SSGPVKVVVGKTFDAIVMDPKK-DVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA 63
Query: 76 FVSGDEDD 83
+ +D
Sbjct: 64 KMDATAND 71
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 131 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190
L+DG + E G P + + E +R+ L H DF ISSDG +
Sbjct: 21 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISSDGTAM 80
Query: 191 SVSDLE 196
+ SD+E
Sbjct: 81 NKSDVE 86
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF-FKGM 414
A K +L+ F A WC C+A P+ A K+K + + + + + ++ +G
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 415 P 415
P
Sbjct: 83 P 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,608,321
Number of Sequences: 62578
Number of extensions: 776785
Number of successful extensions: 2690
Number of sequences better than 100.0: 189
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 375
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)