Query 008336
Match_columns 569
No_of_seqs 610 out of 4401
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.3E-29 2.8E-34 257.5 19.9 340 18-448 22-449 (493)
2 PTZ00102 disulphide isomerase; 100.0 3.8E-28 8.2E-33 260.4 26.8 367 25-492 36-472 (477)
3 TIGR01130 ER_PDI_fam protein d 99.9 3.3E-24 7E-29 229.3 26.3 347 37-449 17-431 (462)
4 cd03009 TryX_like_TryX_NRX Try 99.9 6.1E-24 1.3E-28 186.1 14.0 130 340-469 1-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.9 1.9E-23 4.1E-28 182.5 11.5 119 348-466 16-141 (146)
6 cd02964 TryX_like_family Trypa 99.9 2.5E-22 5.5E-27 175.8 13.5 128 341-469 2-132 (132)
7 cd03009 TryX_like_TryX_NRX Try 99.9 3.2E-22 6.9E-27 175.2 11.9 129 21-149 1-131 (131)
8 cd03008 TryX_like_RdCVF Trypar 99.9 2.1E-22 4.6E-27 175.9 10.1 115 29-144 16-139 (146)
9 cd02964 TryX_like_family Trypa 99.8 8.6E-21 1.9E-25 166.1 11.2 126 23-149 3-132 (132)
10 KOG2501 Thioredoxin, nucleored 99.8 2.2E-20 4.7E-25 160.6 12.2 121 344-464 19-142 (157)
11 KOG2501 Thioredoxin, nucleored 99.8 9.6E-20 2.1E-24 156.7 11.1 123 182-304 17-142 (157)
12 cd02967 mauD Methylamine utili 99.8 6.3E-19 1.4E-23 150.3 12.3 110 339-454 1-112 (114)
13 PF13905 Thioredoxin_8: Thiore 99.8 8E-19 1.7E-23 144.4 12.1 93 357-450 1-95 (95)
14 PF08534 Redoxin: Redoxin; In 99.8 1.2E-18 2.7E-23 155.5 13.4 115 15-133 2-130 (146)
15 PF08534 Redoxin: Redoxin; In 99.8 1.3E-18 2.9E-23 155.3 12.8 115 338-456 6-133 (146)
16 cd03012 TlpA_like_DipZ_like Tl 99.8 7.1E-19 1.5E-23 152.7 10.6 108 346-456 12-124 (126)
17 cd02967 mauD Methylamine utili 99.8 6.8E-18 1.5E-22 143.9 13.1 109 20-134 1-112 (114)
18 KOG0191 Thioredoxin/protein di 99.8 1.6E-17 3.6E-22 171.9 18.5 300 38-445 47-352 (383)
19 cd03010 TlpA_like_DsbE TlpA-li 99.8 4.2E-18 9.1E-23 148.2 11.7 114 338-456 3-119 (127)
20 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 5.8E-18 1.3E-22 146.6 11.8 114 15-132 1-123 (124)
21 PLN02399 phospholipid hydroper 99.8 5.7E-18 1.2E-22 160.2 12.6 134 336-486 77-235 (236)
22 PRK14018 trifunctional thiored 99.8 1.4E-17 3E-22 173.8 15.8 116 337-456 37-158 (521)
23 PRK15412 thiol:disulfide inter 99.8 1.1E-17 2.5E-22 154.9 13.6 114 13-133 39-158 (185)
24 PRK15412 thiol:disulfide inter 99.7 1.2E-17 2.7E-22 154.7 13.4 114 336-456 43-161 (185)
25 PTZ00056 glutathione peroxidas 99.7 7.9E-18 1.7E-22 157.1 11.8 117 336-455 17-162 (199)
26 cd02969 PRX_like1 Peroxiredoxi 99.7 2E-17 4.4E-22 151.7 14.1 143 338-489 4-156 (171)
27 PRK03147 thiol-disulfide oxido 99.7 2.4E-17 5.1E-22 151.7 14.5 117 336-455 39-156 (173)
28 PLN02412 probable glutathione 99.7 6.9E-18 1.5E-22 153.5 10.7 116 337-455 8-148 (167)
29 PTZ00056 glutathione peroxidas 99.7 2.2E-17 4.7E-22 154.1 13.9 120 14-134 14-161 (199)
30 cd03010 TlpA_like_DsbE TlpA-li 99.7 1.2E-17 2.6E-22 145.3 11.4 111 17-133 1-116 (127)
31 PF13905 Thioredoxin_8: Thiore 99.7 2.2E-17 4.7E-22 135.8 12.2 92 38-130 1-95 (95)
32 PLN02399 phospholipid hydroper 99.7 1.7E-17 3.8E-22 156.9 12.3 120 13-133 73-216 (236)
33 cd00340 GSH_Peroxidase Glutath 99.7 7E-18 1.5E-22 151.4 8.7 114 339-456 3-141 (152)
34 PF00578 AhpC-TSA: AhpC/TSA fa 99.7 1.8E-17 3.9E-22 143.6 11.0 113 337-453 4-124 (124)
35 cd00340 GSH_Peroxidase Glutath 99.7 8.8E-18 1.9E-22 150.7 8.9 113 19-133 2-138 (152)
36 cd03012 TlpA_like_DipZ_like Tl 99.7 2E-17 4.4E-22 143.5 10.7 105 27-134 12-122 (126)
37 PRK03147 thiol-disulfide oxido 99.7 1.1E-16 2.3E-21 147.4 15.5 117 14-133 36-154 (173)
38 TIGR00385 dsbE periplasmic pro 99.7 4.9E-17 1.1E-21 149.1 12.1 114 336-456 38-156 (173)
39 PLN02412 probable glutathione 99.7 3E-17 6.5E-22 149.3 10.0 115 17-133 7-146 (167)
40 PRK00522 tpx lipid hydroperoxi 99.7 8.5E-17 1.8E-21 146.4 12.3 116 14-134 19-147 (167)
41 TIGR02661 MauD methylamine deh 99.7 1.4E-16 3.1E-21 147.9 13.7 112 14-133 47-162 (189)
42 PRK00522 tpx lipid hydroperoxi 99.7 8.4E-17 1.8E-21 146.4 12.0 115 336-455 22-148 (167)
43 TIGR02661 MauD methylamine deh 99.7 2E-16 4.4E-21 146.9 14.7 111 336-454 50-163 (189)
44 TIGR02540 gpx7 putative glutat 99.7 5.7E-17 1.2E-21 145.7 10.6 113 340-455 4-137 (153)
45 cd03017 PRX_BCP Peroxiredoxin 99.7 9.4E-17 2E-21 142.3 11.8 114 338-455 3-127 (140)
46 cd02969 PRX_like1 Peroxiredoxi 99.7 2.2E-16 4.7E-21 144.9 14.5 116 16-134 1-126 (171)
47 TIGR00385 dsbE periplasmic pro 99.7 7.3E-17 1.6E-21 148.0 11.1 114 13-133 34-153 (173)
48 PRK09437 bcp thioredoxin-depen 99.7 1.6E-16 3.4E-21 143.2 12.6 115 336-454 8-136 (154)
49 PTZ00256 glutathione peroxidas 99.7 1E-16 2.2E-21 148.2 11.4 116 337-455 19-165 (183)
50 cd03014 PRX_Atyp2cys Peroxired 99.7 1.3E-16 2.8E-21 141.9 11.5 115 336-455 4-127 (143)
51 cd03018 PRX_AhpE_like Peroxire 99.7 2.9E-16 6.3E-21 140.7 13.7 117 15-133 3-129 (149)
52 PRK14018 trifunctional thiored 99.7 4.9E-16 1.1E-20 162.3 16.1 132 14-160 33-171 (521)
53 TIGR01626 ytfJ_HI0045 conserve 99.7 2.1E-16 4.6E-21 143.1 11.6 123 345-485 47-183 (184)
54 cd03015 PRX_Typ2cys Peroxiredo 99.7 2.1E-16 4.5E-21 145.1 11.7 135 337-484 4-156 (173)
55 cd02966 TlpA_like_family TlpA- 99.7 3.2E-16 6.9E-21 133.3 11.7 110 341-453 2-113 (116)
56 cd03014 PRX_Atyp2cys Peroxired 99.7 2.8E-16 6.1E-21 139.7 11.5 114 15-133 2-125 (143)
57 TIGR03137 AhpC peroxiredoxin. 99.7 2.5E-16 5.4E-21 146.0 11.1 117 336-455 6-136 (187)
58 cd03018 PRX_AhpE_like Peroxire 99.7 5.6E-16 1.2E-20 138.9 13.1 116 337-456 6-132 (149)
59 cd03015 PRX_Typ2cys Peroxiredo 99.7 1E-15 2.2E-20 140.6 14.8 116 15-134 1-136 (173)
60 PRK10382 alkyl hydroperoxide r 99.7 5E-16 1.1E-20 142.8 12.3 137 335-484 5-155 (187)
61 PTZ00256 glutathione peroxidas 99.7 3.3E-16 7.1E-21 144.8 10.9 117 16-133 17-163 (183)
62 COG1225 Bcp Peroxiredoxin [Pos 99.7 9.6E-16 2.1E-20 133.7 12.8 115 336-454 8-136 (157)
63 TIGR03137 AhpC peroxiredoxin. 99.7 1E-15 2.3E-20 141.9 13.4 116 14-133 3-134 (187)
64 PRK09437 bcp thioredoxin-depen 99.7 6.4E-16 1.4E-20 139.2 11.7 116 14-133 5-135 (154)
65 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 5.3E-16 1.2E-20 134.1 10.5 107 339-454 1-109 (123)
66 cd03017 PRX_BCP Peroxiredoxin 99.7 7.1E-16 1.5E-20 136.6 11.3 113 17-133 1-125 (140)
67 cd02971 PRX_family Peroxiredox 99.6 1E-15 2.2E-20 135.6 11.6 117 338-457 2-129 (140)
68 COG1225 Bcp Peroxiredoxin [Pos 99.6 5E-15 1.1E-19 129.3 14.3 116 14-133 5-135 (157)
69 TIGR02540 gpx7 putative glutat 99.6 8.2E-16 1.8E-20 138.2 9.7 112 21-133 4-135 (153)
70 TIGR02187 GlrX_arch Glutaredox 99.6 7.6E-15 1.6E-19 139.5 16.7 173 197-449 20-197 (215)
71 cd02968 SCO SCO (an acronym fo 99.6 1.2E-15 2.7E-20 135.4 10.3 115 338-453 2-139 (142)
72 PRK13190 putative peroxiredoxi 99.6 1.9E-15 4.1E-20 141.7 11.8 137 336-485 6-154 (202)
73 cd02966 TlpA_like_family TlpA- 99.6 3.5E-15 7.5E-20 126.9 12.4 110 21-133 1-113 (116)
74 cd02970 PRX_like2 Peroxiredoxi 99.6 2.1E-15 4.5E-20 135.1 11.1 114 338-455 2-147 (149)
75 PRK13728 conjugal transfer pro 99.6 2E-15 4.3E-20 135.8 10.5 95 337-452 54-151 (181)
76 PRK13599 putative peroxiredoxi 99.6 3E-15 6.4E-20 141.0 11.5 139 334-484 4-155 (215)
77 cd02968 SCO SCO (an acronym fo 99.6 2.8E-15 6.1E-20 133.1 10.8 116 18-133 1-139 (142)
78 TIGR02187 GlrX_arch Glutaredox 99.6 1E-14 2.2E-19 138.6 14.6 173 36-285 17-194 (215)
79 PRK10382 alkyl hydroperoxide r 99.6 1.2E-14 2.5E-19 133.7 14.3 117 13-133 2-134 (187)
80 PRK13599 putative peroxiredoxi 99.6 9.1E-15 2E-19 137.7 13.6 117 14-133 3-134 (215)
81 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 5.5E-15 1.2E-19 127.7 10.6 104 20-132 1-107 (123)
82 PTZ00137 2-Cys peroxiredoxin; 99.6 8.9E-15 1.9E-19 140.3 12.4 138 334-484 70-224 (261)
83 PRK15000 peroxidase; Provision 99.6 6.9E-15 1.5E-19 137.3 11.3 138 335-484 5-161 (200)
84 PLN02919 haloacid dehalogenase 99.6 1E-14 2.2E-19 167.6 15.0 117 336-455 395-520 (1057)
85 cd02971 PRX_family Peroxiredox 99.6 1E-14 2.3E-19 129.1 11.7 113 18-134 1-126 (140)
86 KOG0191 Thioredoxin/protein di 99.6 3.6E-14 7.7E-19 147.1 17.3 184 196-449 46-230 (383)
87 PRK13191 putative peroxiredoxi 99.6 1.1E-14 2.3E-19 137.4 11.7 138 335-485 10-161 (215)
88 cd02950 TxlA TRX-like protein 99.6 1.3E-14 2.8E-19 128.0 11.2 98 356-491 19-116 (142)
89 cd03016 PRX_1cys Peroxiredoxin 99.6 1.5E-14 3.2E-19 136.0 11.9 135 337-485 4-154 (203)
90 TIGR01626 ytfJ_HI0045 conserve 99.6 1.4E-14 3E-19 131.3 11.2 113 14-133 24-162 (184)
91 cd02970 PRX_like2 Peroxiredoxi 99.6 1.4E-14 3E-19 129.7 11.0 112 18-133 1-145 (149)
92 PRK13190 putative peroxiredoxi 99.6 2.7E-14 5.8E-19 133.9 13.1 116 14-133 3-132 (202)
93 PLN02919 haloacid dehalogenase 99.6 1.2E-14 2.7E-19 166.9 12.6 117 14-133 392-518 (1057)
94 PTZ00253 tryparedoxin peroxida 99.6 3.1E-14 6.8E-19 133.5 12.2 137 335-484 9-163 (199)
95 PRK15000 peroxidase; Provision 99.5 6.7E-14 1.4E-18 130.7 13.9 117 13-133 2-140 (200)
96 cd03016 PRX_1cys Peroxiredoxin 99.5 7.5E-14 1.6E-18 131.2 13.7 114 15-133 1-132 (203)
97 cd02985 TRX_CDSP32 TRX family, 99.5 3.5E-14 7.6E-19 118.3 10.0 74 356-454 14-87 (103)
98 cd02954 DIM1 Dim1 family; Dim1 99.5 4.6E-14 9.9E-19 117.3 10.3 71 357-454 14-84 (114)
99 PRK13191 putative peroxiredoxi 99.5 1.2E-13 2.7E-18 130.2 13.9 117 13-133 7-139 (215)
100 PTZ00137 2-Cys peroxiredoxin; 99.5 1.2E-13 2.6E-18 132.5 13.8 117 13-133 68-203 (261)
101 PRK13189 peroxiredoxin; Provis 99.5 1E-13 2.2E-18 131.5 12.3 137 335-485 12-163 (222)
102 PRK13728 conjugal transfer pro 99.5 6.6E-14 1.4E-18 126.0 10.2 98 16-132 52-151 (181)
103 TIGR02738 TrbB type-F conjugat 99.5 5.9E-14 1.3E-18 124.4 9.1 87 346-452 43-133 (153)
104 PRK13189 peroxiredoxin; Provis 99.5 2.4E-13 5.2E-18 129.0 13.8 115 14-133 10-141 (222)
105 PRK10606 btuE putative glutath 99.5 1.2E-13 2.6E-18 126.2 10.4 81 338-422 5-94 (183)
106 PHA02278 thioredoxin-like prot 99.5 2.2E-13 4.7E-18 112.5 9.9 77 356-455 13-89 (103)
107 cd02948 TRX_NDPK TRX domain, T 99.5 2.4E-13 5.2E-18 113.1 9.6 71 357-454 17-87 (102)
108 PTZ00253 tryparedoxin peroxida 99.5 5.5E-13 1.2E-17 125.0 13.3 116 14-133 7-142 (199)
109 cd02985 TRX_CDSP32 TRX family, 99.5 2.6E-13 5.7E-18 113.0 9.5 74 35-133 12-86 (103)
110 KOG0910 Thioredoxin-like prote 99.5 2.4E-13 5.1E-18 116.2 9.1 71 357-454 61-131 (150)
111 cd02954 DIM1 Dim1 family; Dim1 99.5 3.6E-13 7.8E-18 112.0 9.7 71 37-134 13-84 (114)
112 cd02999 PDI_a_ERp44_like PDIa 99.4 4.2E-13 9E-18 110.9 9.0 69 34-130 14-84 (100)
113 cd02999 PDI_a_ERp44_like PDIa 99.4 4.5E-13 9.8E-18 110.7 9.2 67 354-447 15-82 (100)
114 cd02963 TRX_DnaJ TRX domain, D 99.4 1E-12 2.2E-17 111.0 10.8 73 356-454 23-95 (111)
115 cd02950 TxlA TRX-like protein 99.4 1.1E-12 2.3E-17 115.8 10.0 74 36-133 18-92 (142)
116 KOG0907 Thioredoxin [Posttrans 99.4 7.2E-13 1.6E-17 109.4 8.0 70 357-454 21-90 (106)
117 PRK10606 btuE putative glutath 99.4 2.2E-12 4.7E-17 117.9 11.8 82 17-100 3-94 (183)
118 cd02956 ybbN ybbN protein fami 99.4 2.1E-12 4.6E-17 106.2 10.7 71 356-453 11-81 (96)
119 KOG0910 Thioredoxin-like prote 99.4 1.5E-12 3.2E-17 111.3 9.3 68 38-132 61-129 (150)
120 cd02951 SoxW SoxW family; SoxW 99.4 2.8E-12 6.1E-17 111.1 10.8 87 356-455 12-103 (125)
121 PHA02278 thioredoxin-like prot 99.4 2E-12 4.3E-17 106.8 9.2 74 37-133 13-87 (103)
122 TIGR02738 TrbB type-F conjugat 99.4 2.3E-12 5.1E-17 114.2 10.3 87 27-132 43-133 (153)
123 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1.6E-12 3.5E-17 108.0 8.4 71 356-453 17-87 (101)
124 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.6E-12 7.9E-17 107.1 9.6 67 37-130 28-96 (113)
125 cd02963 TRX_DnaJ TRX domain, D 99.4 5.7E-12 1.2E-16 106.4 10.6 72 36-133 22-94 (111)
126 cd03006 PDI_a_EFP1_N PDIa fami 99.3 3.8E-12 8.3E-17 106.9 9.0 70 356-452 28-98 (113)
127 cd02948 TRX_NDPK TRX domain, T 99.3 5.5E-12 1.2E-16 104.8 9.7 70 37-133 16-86 (102)
128 cd02994 PDI_a_TMX PDIa family, 99.3 7.6E-12 1.7E-16 103.9 10.5 69 37-131 16-84 (101)
129 TIGR02740 TraF-like TraF-like 99.3 3.3E-12 7.2E-17 124.7 9.0 87 349-452 158-244 (271)
130 COG3118 Thioredoxin domain-con 99.3 2.5E-12 5.4E-17 121.9 7.6 79 349-454 35-113 (304)
131 cd02956 ybbN ybbN protein fami 99.3 8E-12 1.7E-16 102.7 9.8 69 37-132 11-80 (96)
132 cd02953 DsbDgamma DsbD gamma f 99.3 8.6E-12 1.9E-16 104.2 9.9 77 356-454 10-90 (104)
133 cd03013 PRX5_like Peroxiredoxi 99.3 8.5E-12 1.9E-16 111.8 10.4 115 337-455 4-138 (155)
134 PLN00410 U5 snRNP protein, DIM 99.3 9E-12 2E-16 107.8 9.9 71 357-454 23-95 (142)
135 PRK09381 trxA thioredoxin; Pro 99.3 1.2E-11 2.6E-16 104.3 10.5 71 357-454 21-91 (109)
136 cd02986 DLP Dim1 family, Dim1- 99.3 8.1E-12 1.8E-16 102.9 9.1 72 356-454 13-84 (114)
137 cd03003 PDI_a_ERdj5_N PDIa fam 99.3 6.3E-12 1.4E-16 104.4 8.6 78 27-131 7-85 (101)
138 COG0450 AhpC Peroxiredoxin [Po 99.3 1.3E-11 2.8E-16 110.1 10.7 139 334-485 5-161 (194)
139 KOG0908 Thioredoxin-like prote 99.3 5.3E-12 1.1E-16 115.4 8.0 121 357-520 21-167 (288)
140 cd02962 TMX2 TMX2 family; comp 99.3 1.6E-11 3.5E-16 108.5 10.7 74 357-456 47-126 (152)
141 cd02959 ERp19 Endoplasmic reti 99.3 7.4E-12 1.6E-16 106.4 8.1 73 356-453 18-92 (117)
142 COG3118 Thioredoxin domain-con 99.3 1.1E-11 2.3E-16 117.7 9.8 87 37-161 42-129 (304)
143 cd02962 TMX2 TMX2 family; comp 99.3 2.1E-11 4.4E-16 107.9 10.7 72 37-134 46-124 (152)
144 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 1.4E-11 2.9E-16 103.0 9.1 71 357-453 19-89 (104)
145 cd03000 PDI_a_TMX3 PDIa family 99.3 4E-11 8.7E-16 100.1 11.3 69 37-130 14-84 (104)
146 cd02994 PDI_a_TMX PDIa family, 99.3 2.8E-11 6.2E-16 100.5 10.2 68 356-450 16-83 (101)
147 PRK10996 thioredoxin 2; Provis 99.3 3.9E-11 8.4E-16 105.5 11.6 71 357-454 52-122 (139)
148 KOG0907 Thioredoxin [Posttrans 99.3 1.1E-11 2.4E-16 102.3 7.5 68 37-132 20-88 (106)
149 cd03013 PRX5_like Peroxiredoxi 99.3 2.5E-11 5.5E-16 108.8 10.3 114 15-133 1-136 (155)
150 cd03000 PDI_a_TMX3 PDIa family 99.3 6.2E-11 1.3E-15 99.0 11.9 70 357-450 15-84 (104)
151 cd02996 PDI_a_ERp44 PDIa famil 99.3 3.1E-11 6.6E-16 101.6 10.1 71 357-451 18-91 (108)
152 cd02996 PDI_a_ERp44 PDIa famil 99.2 1.7E-11 3.6E-16 103.2 7.7 69 37-130 17-90 (108)
153 PF02630 SCO1-SenC: SCO1/SenC; 99.2 6E-11 1.3E-15 108.5 11.8 117 337-453 31-170 (174)
154 PF13098 Thioredoxin_2: Thiore 99.2 3E-11 6.6E-16 102.4 9.1 96 356-454 4-99 (112)
155 TIGR01126 pdi_dom protein disu 99.2 5.4E-11 1.2E-15 98.9 10.3 71 37-131 12-83 (102)
156 cd02984 TRX_PICOT TRX domain, 99.2 3.9E-11 8.4E-16 98.8 9.2 71 357-454 14-84 (97)
157 cd02993 PDI_a_APS_reductase PD 99.2 4.3E-11 9.3E-16 100.8 9.6 73 356-452 20-93 (109)
158 PTZ00062 glutaredoxin; Provisi 99.2 8.8E-11 1.9E-15 108.7 12.4 60 38-133 18-77 (204)
159 cd03065 PDI_b_Calsequestrin_N 99.2 3.8E-11 8.2E-16 101.6 8.9 71 357-452 27-101 (120)
160 cd03002 PDI_a_MPD1_like PDI fa 99.2 4.6E-11 1E-15 100.7 9.5 69 357-449 18-86 (109)
161 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 5.7E-11 1.2E-15 99.2 9.9 69 37-131 18-87 (104)
162 cd02965 HyaE HyaE family; HyaE 99.2 3.6E-11 7.9E-16 99.3 8.3 72 357-455 27-100 (111)
163 cd02986 DLP Dim1 family, Dim1- 99.2 5.8E-11 1.3E-15 97.9 9.1 69 37-132 13-82 (114)
164 cd03005 PDI_a_ERp46 PDIa famil 99.2 4.3E-11 9.4E-16 99.5 8.7 71 359-453 18-88 (102)
165 PRK09381 trxA thioredoxin; Pro 99.2 1.1E-10 2.3E-15 98.4 10.9 68 38-132 21-89 (109)
166 PF00085 Thioredoxin: Thioredo 99.2 7.4E-11 1.6E-15 98.2 9.7 70 357-453 17-86 (103)
167 cd02993 PDI_a_APS_reductase PD 99.2 8.1E-11 1.7E-15 99.1 9.9 69 37-129 20-90 (109)
168 cd02953 DsbDgamma DsbD gamma f 99.2 5.5E-11 1.2E-15 99.3 8.6 74 37-132 10-88 (104)
169 cd02989 Phd_like_TxnDC9 Phosdu 99.2 8.6E-11 1.9E-15 99.3 9.7 71 357-455 22-92 (113)
170 cd03002 PDI_a_MPD1_like PDI fa 99.2 6.2E-11 1.3E-15 99.9 8.8 69 37-129 17-86 (109)
171 cd03065 PDI_b_Calsequestrin_N 99.2 6.1E-11 1.3E-15 100.3 8.5 69 40-133 30-102 (120)
172 PTZ00443 Thioredoxin domain-co 99.2 1.2E-10 2.6E-15 109.7 11.4 71 357-454 52-122 (224)
173 cd03005 PDI_a_ERp46 PDIa famil 99.2 6.2E-11 1.3E-15 98.6 8.5 67 40-131 19-86 (102)
174 cd02957 Phd_like Phosducin (Ph 99.2 5.9E-11 1.3E-15 100.6 8.2 71 357-456 24-94 (113)
175 cd02951 SoxW SoxW family; SoxW 99.2 1.3E-10 2.8E-15 100.6 10.5 85 36-133 11-101 (125)
176 cd02949 TRX_NTR TRX domain, no 99.2 1.6E-10 3.5E-15 95.1 10.4 71 357-454 13-83 (97)
177 PRK10996 thioredoxin 2; Provis 99.2 2.8E-10 6.1E-15 100.1 11.9 70 37-133 51-121 (139)
178 KOG4277 Uncharacterized conser 99.2 3.9E-10 8.5E-15 105.6 13.1 71 40-135 46-117 (468)
179 TIGR01126 pdi_dom protein disu 99.2 1.3E-10 2.8E-15 96.5 9.2 70 356-449 12-81 (102)
180 cd02955 SSP411 TRX domain, SSP 99.2 3.5E-10 7.7E-15 96.5 11.7 82 356-455 14-98 (124)
181 PTZ00062 glutaredoxin; Provisi 99.2 7.9E-11 1.7E-15 109.0 8.3 107 358-515 18-129 (204)
182 cd02997 PDI_a_PDIR PDIa family 99.2 1.1E-10 2.3E-15 97.5 8.1 73 37-132 16-89 (104)
183 PF00085 Thioredoxin: Thioredo 99.2 3.6E-10 7.8E-15 94.0 11.4 84 38-159 17-101 (103)
184 cd02989 Phd_like_TxnDC9 Phosdu 99.2 4.8E-10 1E-14 94.7 12.2 69 37-133 21-90 (113)
185 cd02957 Phd_like Phosducin (Ph 99.1 2.3E-10 5E-15 97.0 9.8 67 38-133 24-91 (113)
186 cd02952 TRP14_like Human TRX-r 99.1 1.3E-10 2.8E-15 97.9 8.1 79 356-453 20-106 (119)
187 TIGR02740 TraF-like TraF-like 99.1 6.3E-11 1.4E-15 115.7 6.9 88 27-131 155-243 (271)
188 cd02992 PDI_a_QSOX PDIa family 99.1 1.6E-10 3.4E-15 98.0 8.2 72 38-132 19-92 (114)
189 PLN00410 U5 snRNP protein, DIM 99.1 2.4E-10 5.1E-15 99.0 9.2 68 37-130 22-90 (142)
190 PTZ00051 thioredoxin; Provisio 99.1 2.3E-10 4.9E-15 94.4 8.8 71 357-455 18-88 (98)
191 PTZ00443 Thioredoxin domain-co 99.1 4.3E-10 9.3E-15 106.0 11.7 68 38-132 52-120 (224)
192 cd02992 PDI_a_QSOX PDIa family 99.1 3.2E-10 6.9E-15 96.1 9.8 74 357-452 19-92 (114)
193 cd02959 ERp19 Endoplasmic reti 99.1 1.1E-10 2.3E-15 99.3 6.7 77 32-133 13-92 (117)
194 cd02965 HyaE HyaE family; HyaE 99.1 2.8E-10 6.2E-15 94.0 8.9 70 37-133 26-98 (111)
195 TIGR01068 thioredoxin thioredo 99.1 4.5E-10 9.7E-15 93.0 10.3 70 357-453 14-83 (101)
196 cd02997 PDI_a_PDIR PDIa family 99.1 3.1E-10 6.7E-15 94.7 9.2 74 357-453 17-90 (104)
197 cd02984 TRX_PICOT TRX domain, 99.1 4E-10 8.6E-15 92.8 9.4 69 38-133 14-83 (97)
198 PF02630 SCO1-SenC: SCO1/SenC; 99.1 6.3E-10 1.4E-14 101.8 11.6 119 15-133 28-170 (174)
199 PTZ00051 thioredoxin; Provisio 99.1 4.1E-10 9E-15 92.8 9.0 69 37-133 17-86 (98)
200 PF13098 Thioredoxin_2: Thiore 99.1 1.7E-10 3.7E-15 97.7 6.7 90 37-132 4-97 (112)
201 TIGR01295 PedC_BrcD bacterioci 99.1 7.2E-10 1.6E-14 94.8 10.4 74 357-455 23-107 (122)
202 cd02949 TRX_NTR TRX domain, no 99.1 6.5E-10 1.4E-14 91.5 9.7 69 37-132 12-81 (97)
203 cd03001 PDI_a_P5 PDIa family, 99.1 8E-10 1.7E-14 92.0 10.0 65 357-447 18-82 (103)
204 COG1999 Uncharacterized protei 99.1 1.9E-09 4.1E-14 101.0 13.4 134 340-487 49-206 (207)
205 cd02998 PDI_a_ERp38 PDIa famil 99.1 6.2E-10 1.3E-14 93.0 8.7 68 37-128 17-86 (105)
206 cd02987 Phd_like_Phd Phosducin 99.1 1.2E-09 2.6E-14 99.7 11.1 71 357-456 83-153 (175)
207 cd02975 PfPDO_like_N Pyrococcu 99.1 1.5E-09 3.2E-14 91.9 10.8 63 357-446 22-84 (113)
208 cd03001 PDI_a_P5 PDIa family, 99.0 1.3E-09 2.9E-14 90.6 9.9 64 38-127 18-82 (103)
209 PTZ00102 disulphide isomerase; 99.0 5.1E-09 1.1E-13 112.5 16.6 185 48-290 258-444 (477)
210 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.5E-09 3.3E-14 90.4 9.8 66 38-128 18-84 (104)
211 cd02987 Phd_like_Phd Phosducin 99.0 1.8E-09 4E-14 98.4 11.0 88 38-159 83-172 (175)
212 COG0450 AhpC Peroxiredoxin [Po 99.0 3.5E-09 7.7E-14 94.7 12.5 119 12-133 2-139 (194)
213 cd02998 PDI_a_ERp38 PDIa famil 99.0 1.2E-09 2.5E-14 91.3 8.5 72 357-452 18-90 (105)
214 cd02952 TRP14_like Human TRX-r 99.0 1.1E-09 2.5E-14 92.2 7.4 77 37-132 20-105 (119)
215 cd02961 PDI_a_family Protein D 99.0 1.3E-09 2.9E-14 89.9 7.6 68 37-128 14-82 (101)
216 TIGR01068 thioredoxin thioredo 99.0 6.6E-09 1.4E-13 85.9 11.5 68 38-132 14-82 (101)
217 TIGR01295 PedC_BrcD bacterioci 99.0 2.7E-09 5.9E-14 91.3 9.3 79 37-133 22-105 (122)
218 cd02961 PDI_a_family Protein D 99.0 2.3E-09 5E-14 88.5 8.6 73 357-453 15-87 (101)
219 cd02955 SSP411 TRX domain, SSP 99.0 5.3E-09 1.2E-13 89.2 10.7 86 32-135 9-98 (124)
220 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 3.4E-09 7.4E-14 88.3 9.4 67 357-448 18-84 (104)
221 cd02975 PfPDO_like_N Pyrococcu 98.9 2.9E-09 6.2E-14 90.0 8.3 61 40-127 25-85 (113)
222 TIGR00424 APS_reduc 5'-adenyly 98.9 4.1E-09 8.8E-14 109.4 10.4 71 355-449 369-439 (463)
223 TIGR00411 redox_disulf_1 small 98.9 8.7E-09 1.9E-13 81.8 9.8 63 360-451 2-64 (82)
224 cd02988 Phd_like_VIAF Phosduci 98.9 1.1E-08 2.4E-13 94.6 10.3 86 357-477 102-187 (192)
225 cd02960 AGR Anterior Gradient 98.9 9.2E-09 2E-13 87.6 8.7 98 356-484 22-122 (130)
226 TIGR00424 APS_reduc 5'-adenyly 98.9 5.6E-09 1.2E-13 108.3 8.9 69 36-127 369-438 (463)
227 cd02988 Phd_like_VIAF Phosduci 98.9 1.3E-08 2.9E-13 94.0 10.5 87 37-159 101-189 (192)
228 PLN02309 5'-adenylylsulfate re 98.9 1E-08 2.2E-13 106.4 10.6 68 356-447 364-432 (457)
229 KOG0912 Thiol-disulfide isomer 98.8 4.4E-08 9.6E-13 92.5 13.1 72 38-132 13-86 (375)
230 KOG0190 Protein disulfide isom 98.8 1E-08 2.2E-13 105.7 9.5 70 357-450 42-111 (493)
231 PRK00293 dipZ thiol:disulfide 98.8 2.3E-08 4.9E-13 108.4 10.6 74 355-451 472-548 (571)
232 KOG0908 Thioredoxin-like prote 98.8 9.2E-09 2E-13 94.5 6.2 72 33-132 16-88 (288)
233 cd02947 TRX_family TRX family; 98.8 4.3E-08 9.3E-13 79.2 9.6 69 357-453 10-78 (93)
234 TIGR00411 redox_disulf_1 small 98.8 4E-08 8.7E-13 77.9 9.2 61 41-130 3-63 (82)
235 KOG0855 Alkyl hydroperoxide re 98.8 2.3E-08 5E-13 85.7 8.0 112 13-128 63-185 (211)
236 KOG0852 Alkyl hydroperoxide re 98.8 3.5E-08 7.5E-13 85.7 9.1 113 342-456 18-142 (196)
237 KOG2792 Putative cytochrome C 98.8 6.6E-08 1.4E-12 89.5 11.0 116 340-455 121-259 (280)
238 COG0386 BtuE Glutathione perox 98.8 1.3E-07 2.7E-12 80.9 11.7 113 339-454 6-143 (162)
239 TIGR01130 ER_PDI_fam protein d 98.7 2.8E-07 6.1E-12 98.6 17.5 186 44-289 242-431 (462)
240 cd02982 PDI_b'_family Protein 98.7 4.1E-08 8.9E-13 81.6 8.4 64 357-446 12-77 (103)
241 PLN02309 5'-adenylylsulfate re 98.7 3.4E-08 7.3E-13 102.6 9.4 66 37-127 364-432 (457)
242 KOG0855 Alkyl hydroperoxide re 98.7 3.2E-08 6.9E-13 84.9 7.6 111 335-449 66-186 (211)
243 COG1999 Uncharacterized protei 98.7 1.4E-07 3E-12 88.4 12.4 113 21-133 49-186 (207)
244 cd02947 TRX_family TRX family; 98.7 6.6E-08 1.4E-12 78.1 9.0 66 39-132 11-77 (93)
245 KOG0912 Thiol-disulfide isomer 98.7 5.2E-08 1.1E-12 92.0 8.8 94 357-485 13-106 (375)
246 TIGR00412 redox_disulf_2 small 98.7 6.8E-08 1.5E-12 75.2 8.0 61 361-453 2-62 (76)
247 KOG4277 Uncharacterized conser 98.7 1.6E-08 3.4E-13 95.0 4.7 76 357-455 43-118 (468)
248 PHA02125 thioredoxin-like prot 98.7 8.9E-08 1.9E-12 74.5 8.0 57 361-453 2-58 (75)
249 cd02973 TRX_GRX_like Thioredox 98.7 1.3E-07 2.8E-12 71.8 8.2 62 41-132 3-64 (67)
250 cd02973 TRX_GRX_like Thioredox 98.7 1.1E-07 2.3E-12 72.2 7.7 64 360-453 2-65 (67)
251 cd02960 AGR Anterior Gradient 98.6 1.1E-07 2.5E-12 81.0 8.3 98 33-161 18-119 (130)
252 COG2077 Tpx Peroxiredoxin [Pos 98.6 3.4E-07 7.4E-12 77.9 10.8 117 14-134 19-147 (158)
253 TIGR00412 redox_disulf_2 small 98.6 1.4E-07 3.1E-12 73.4 7.9 59 41-131 2-60 (76)
254 cd03007 PDI_a_ERp29_N PDIa fam 98.6 1.6E-07 3.6E-12 78.5 8.7 66 37-128 17-90 (116)
255 PRK00293 dipZ thiol:disulfide 98.6 9.6E-08 2.1E-12 103.5 8.9 76 33-131 469-548 (571)
256 KOG2792 Putative cytochrome C 98.6 3.5E-07 7.5E-12 84.8 10.5 116 20-135 120-259 (280)
257 PHA02125 thioredoxin-like prot 98.6 2.2E-07 4.7E-12 72.2 7.7 50 41-122 2-51 (75)
258 cd02958 UAS UAS family; UAS is 98.5 6.9E-07 1.5E-11 75.7 10.4 75 356-454 16-94 (114)
259 cd02982 PDI_b'_family Protein 98.5 5.1E-07 1.1E-11 75.0 8.8 64 197-286 12-77 (103)
260 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 4E-07 8.7E-12 73.1 7.7 71 353-453 8-78 (89)
261 cd03026 AhpF_NTD_C TRX-GRX-lik 98.5 7E-07 1.5E-11 71.7 7.6 71 33-133 7-78 (89)
262 KOG1651 Glutathione peroxidase 98.4 9.6E-07 2.1E-11 76.6 8.8 114 339-454 15-152 (171)
263 PF07649 C1_3: C1-like domain; 98.4 4.8E-08 1E-12 60.7 0.4 29 509-537 1-30 (30)
264 cd03007 PDI_a_ERp29_N PDIa fam 98.4 1.1E-06 2.4E-11 73.5 8.0 70 357-449 18-91 (116)
265 PF13899 Thioredoxin_7: Thiore 98.4 1.1E-06 2.3E-11 69.7 7.1 63 357-446 17-82 (82)
266 PF13728 TraF: F plasmid trans 98.4 1.6E-06 3.5E-11 81.7 9.2 84 353-453 116-199 (215)
267 KOG1731 FAD-dependent sulfhydr 98.3 4.4E-07 9.6E-12 93.4 4.4 69 358-447 58-126 (606)
268 cd02958 UAS UAS family; UAS is 98.2 6.4E-06 1.4E-10 69.8 9.1 77 33-133 12-93 (114)
269 KOG1731 FAD-dependent sulfhydr 98.2 1.1E-06 2.3E-11 90.6 4.6 66 40-127 60-126 (606)
270 TIGR02739 TraF type-F conjugat 98.2 5.2E-06 1.1E-10 79.6 9.0 83 354-453 147-229 (256)
271 KOG0852 Alkyl hydroperoxide re 98.2 8.3E-06 1.8E-10 71.1 8.6 117 14-133 5-139 (196)
272 smart00594 UAS UAS domain. 98.2 1.2E-05 2.6E-10 68.9 9.6 69 356-448 26-97 (122)
273 PF13899 Thioredoxin_7: Thiore 98.2 4.7E-06 1E-10 66.0 6.5 45 36-82 15-63 (82)
274 PF00255 GSHPx: Glutathione pe 98.2 1.4E-05 3E-10 66.0 9.2 60 340-402 3-63 (108)
275 PRK13703 conjugal pilus assemb 98.2 7.1E-06 1.5E-10 78.2 8.5 82 354-452 140-221 (248)
276 COG2077 Tpx Peroxiredoxin [Pos 98.2 2.4E-05 5.2E-10 66.9 10.6 117 336-457 22-150 (158)
277 COG0386 BtuE Glutathione perox 98.1 1.5E-05 3.1E-10 68.5 9.2 114 19-134 5-143 (162)
278 PF13728 TraF: F plasmid trans 98.1 7.8E-06 1.7E-10 77.1 8.3 83 31-130 113-196 (215)
279 KOG0854 Alkyl hydroperoxide re 98.1 2.8E-05 6E-10 67.7 10.0 137 336-485 10-168 (224)
280 PF14595 Thioredoxin_9: Thiore 98.1 8.7E-06 1.9E-10 70.1 6.8 76 356-455 40-115 (129)
281 TIGR03143 AhpF_homolog putativ 98.1 0.00018 4E-09 78.5 18.1 178 195-453 364-542 (555)
282 smart00594 UAS UAS domain. 98.0 2.3E-05 4.9E-10 67.2 8.6 74 31-128 20-97 (122)
283 PF03107 C1_2: C1 domain; Int 98.0 3.1E-06 6.7E-11 52.4 2.1 29 509-537 1-30 (30)
284 COG0526 TrxA Thiol-disulfide i 98.0 2.1E-05 4.5E-10 66.2 7.9 68 351-444 26-96 (127)
285 cd01659 TRX_superfamily Thiore 98.0 3.6E-05 7.7E-10 56.8 8.1 63 41-127 1-63 (69)
286 cd01659 TRX_superfamily Thiore 98.0 3.5E-05 7.7E-10 56.9 7.9 63 361-447 1-63 (69)
287 COG0526 TrxA Thiol-disulfide i 98.0 2.8E-05 6E-10 65.4 8.1 69 30-124 24-96 (127)
288 KOG1651 Glutathione peroxidase 98.0 3.4E-05 7.3E-10 67.2 8.1 118 17-135 12-153 (171)
289 TIGR02739 TraF type-F conjugat 97.9 2.3E-05 4.9E-10 75.3 7.3 83 32-131 144-227 (256)
290 TIGR03143 AhpF_homolog putativ 97.9 0.00027 5.8E-09 77.2 15.9 173 34-284 362-536 (555)
291 PF14595 Thioredoxin_9: Thiore 97.9 9.6E-06 2.1E-10 69.9 3.4 77 33-133 36-113 (129)
292 COG2143 Thioredoxin-related pr 97.9 0.00022 4.7E-09 61.3 11.3 84 356-453 41-131 (182)
293 PRK13703 conjugal pilus assemb 97.9 3.1E-05 6.7E-10 73.9 6.9 80 32-128 137-217 (248)
294 PF06110 DUF953: Eukaryotic pr 97.9 7.8E-05 1.7E-09 62.7 8.3 78 357-453 19-105 (119)
295 PF13848 Thioredoxin_6: Thiore 97.8 0.00038 8.2E-09 64.3 13.8 171 55-319 8-183 (184)
296 PF03190 Thioredox_DsbH: Prote 97.8 8.5E-05 1.8E-09 65.8 8.7 79 357-453 37-118 (163)
297 PF00837 T4_deiodinase: Iodoth 97.8 0.00012 2.7E-09 68.3 9.2 135 14-160 74-235 (237)
298 PF00255 GSHPx: Glutathione pe 97.8 0.00017 3.6E-09 59.7 8.5 58 21-80 3-62 (108)
299 TIGR02196 GlrX_YruB Glutaredox 97.7 0.00026 5.6E-09 54.2 9.0 59 361-450 2-60 (74)
300 KOG0854 Alkyl hydroperoxide re 97.7 0.00024 5.1E-09 62.1 9.3 114 15-132 8-145 (224)
301 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00022 4.7E-09 54.7 7.5 55 41-123 2-56 (74)
302 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00019 4E-09 56.9 6.7 65 41-131 1-65 (84)
303 COG4232 Thiol:disulfide interc 97.6 7.2E-05 1.6E-09 78.4 5.3 77 356-453 473-550 (569)
304 PRK11509 hydrogenase-1 operon 97.6 0.00064 1.4E-08 58.2 9.9 90 359-488 36-127 (132)
305 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00019 4E-09 56.9 5.9 65 361-451 1-65 (84)
306 TIGR02200 GlrX_actino Glutared 97.5 0.00035 7.5E-09 54.2 7.1 62 41-132 2-64 (77)
307 TIGR02200 GlrX_actino Glutared 97.5 0.00051 1.1E-08 53.3 7.8 63 361-453 2-65 (77)
308 COG2143 Thioredoxin-related pr 97.4 0.00083 1.8E-08 57.8 8.7 87 32-133 36-131 (182)
309 COG4232 Thiol:disulfide interc 97.4 0.0002 4.4E-09 75.1 6.1 75 35-130 471-547 (569)
310 KOG0914 Thioredoxin-like prote 97.3 0.00033 7.1E-09 63.6 5.4 90 357-474 144-240 (265)
311 PF03190 Thioredox_DsbH: Prote 97.3 0.0013 2.8E-08 58.4 8.5 87 29-133 28-118 (163)
312 KOG0911 Glutaredoxin-related p 97.2 0.00029 6.3E-09 64.7 3.8 70 356-453 16-85 (227)
313 KOG3425 Uncharacterized conser 97.2 0.0012 2.6E-08 54.2 6.6 71 357-446 25-104 (128)
314 cd02991 UAS_ETEA UAS family, E 97.2 0.0027 5.8E-08 53.7 9.1 73 356-453 16-95 (116)
315 PF00837 T4_deiodinase: Iodoth 97.2 0.0045 9.7E-08 58.1 11.0 118 335-457 76-220 (237)
316 PF13192 Thioredoxin_3: Thiore 97.2 0.0055 1.2E-07 47.5 9.9 59 364-454 5-63 (76)
317 PF00462 Glutaredoxin: Glutare 97.1 0.003 6.6E-08 46.4 7.7 59 41-130 1-59 (60)
318 PF06110 DUF953: Eukaryotic pr 97.1 0.0028 6.1E-08 53.3 8.1 74 37-129 18-101 (119)
319 PRK11657 dsbG disulfide isomer 97.1 0.0037 8E-08 60.7 10.0 98 31-132 110-234 (251)
320 KOG0914 Thioredoxin-like prote 97.0 0.00047 1E-08 62.6 3.0 100 27-153 131-239 (265)
321 PF13848 Thioredoxin_6: Thiore 97.0 0.02 4.4E-07 52.6 13.7 128 268-450 32-164 (184)
322 cd03020 DsbA_DsbC_DsbG DsbA fa 97.0 0.0074 1.6E-07 56.5 10.8 96 30-131 69-184 (197)
323 PRK11657 dsbG disulfide isomer 97.0 0.0058 1.2E-07 59.3 10.3 93 356-453 116-235 (251)
324 PF13192 Thioredoxin_3: Thiore 96.9 0.0083 1.8E-07 46.5 9.0 59 43-133 4-62 (76)
325 cd02991 UAS_ETEA UAS family, E 96.9 0.0058 1.3E-07 51.6 8.6 66 33-125 12-84 (116)
326 PRK10877 protein disulfide iso 96.9 0.0089 1.9E-07 57.3 10.7 94 31-131 100-214 (232)
327 cd03020 DsbA_DsbC_DsbG DsbA fa 96.7 0.012 2.7E-07 55.0 10.3 88 357-451 77-184 (197)
328 PF00462 Glutaredoxin: Glutare 96.7 0.0094 2E-07 43.7 7.6 59 361-450 1-59 (60)
329 PRK11200 grxA glutaredoxin 1; 96.7 0.0067 1.5E-07 48.1 7.1 40 41-83 3-42 (85)
330 PRK10877 protein disulfide iso 96.7 0.012 2.5E-07 56.5 9.9 88 356-451 106-214 (232)
331 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.023 5E-07 43.1 9.2 55 361-443 2-56 (73)
332 KOG0913 Thiol-disulfide isomer 96.5 0.00041 8.9E-09 63.9 -1.1 73 38-136 40-112 (248)
333 cd02972 DsbA_family DsbA famil 96.5 0.0075 1.6E-07 48.6 6.5 81 361-445 1-91 (98)
334 PF02114 Phosducin: Phosducin; 96.5 0.01 2.2E-07 57.8 8.3 70 357-455 146-215 (265)
335 PRK11200 grxA glutaredoxin 1; 96.5 0.0087 1.9E-07 47.5 6.5 66 361-452 3-70 (85)
336 PRK15317 alkyl hydroperoxide r 96.5 0.32 7E-06 52.8 20.5 70 354-453 113-182 (517)
337 PRK11509 hydrogenase-1 operon 96.5 0.01 2.3E-07 50.8 7.0 68 40-133 37-106 (132)
338 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.011 2.3E-07 46.4 6.6 63 41-131 2-64 (82)
339 cd02972 DsbA_family DsbA famil 96.4 0.015 3.3E-07 46.8 7.6 83 41-125 1-91 (98)
340 cd03072 PDI_b'_ERp44 PDIb' fam 96.3 0.012 2.7E-07 49.3 6.5 77 211-323 28-109 (111)
341 cd02976 NrdH NrdH-redoxin (Nrd 96.3 0.021 4.5E-07 43.3 7.4 55 41-123 2-56 (73)
342 cd02340 ZZ_NBR1_like Zinc fing 96.2 0.0028 6E-08 42.8 1.7 30 510-539 2-32 (43)
343 cd03419 GRX_GRXh_1_2_like Glut 96.1 0.014 3.1E-07 45.7 5.8 63 361-451 2-64 (82)
344 cd02066 GRX_family Glutaredoxi 96.1 0.042 9E-07 41.4 8.3 60 41-131 2-61 (72)
345 PF04592 SelP_N: Selenoprotein 96.0 0.064 1.4E-06 50.1 10.3 103 350-453 19-125 (238)
346 KOG0911 Glutaredoxin-related p 96.0 0.017 3.7E-07 53.3 6.5 67 37-131 16-83 (227)
347 TIGR03140 AhpF alkyl hydropero 96.0 0.76 1.6E-05 49.9 20.2 70 354-453 114-183 (515)
348 TIGR02190 GlrX-dom Glutaredoxi 95.9 0.035 7.6E-07 43.3 6.8 60 40-131 9-68 (79)
349 PF02114 Phosducin: Phosducin; 95.8 0.031 6.7E-07 54.4 7.5 90 38-160 146-236 (265)
350 cd03073 PDI_b'_ERp72_ERp57 PDI 95.7 0.077 1.7E-06 44.4 8.8 84 198-320 16-109 (111)
351 PF05988 DUF899: Bacterial pro 95.7 0.044 9.6E-07 50.4 7.7 110 339-453 47-171 (211)
352 KOG3425 Uncharacterized conser 95.7 0.044 9.6E-07 45.2 6.8 71 37-126 24-104 (128)
353 cd02066 GRX_family Glutaredoxi 95.6 0.063 1.4E-06 40.4 7.4 62 361-453 2-63 (72)
354 PHA03050 glutaredoxin; Provisi 95.5 0.033 7.2E-07 46.3 5.8 67 40-131 14-80 (108)
355 TIGR02181 GRX_bact Glutaredoxi 95.5 0.043 9.4E-07 42.7 6.2 54 42-123 2-55 (79)
356 cd02983 P5_C P5 family, C-term 95.5 0.047 1E-06 47.1 6.8 77 213-326 40-119 (130)
357 TIGR02189 GlrX-like_plant Glut 95.5 0.051 1.1E-06 44.5 6.7 64 40-131 9-72 (99)
358 PRK10329 glutaredoxin-like pro 95.4 0.25 5.5E-06 38.7 10.2 54 41-123 3-56 (81)
359 TIGR02183 GRXA Glutaredoxin, G 95.4 0.052 1.1E-06 43.1 6.4 39 41-82 2-40 (86)
360 cd02339 ZZ_Mind_bomb Zinc fing 95.4 0.0092 2E-07 40.7 1.6 29 510-538 2-32 (45)
361 PF09695 YtfJ_HI0045: Bacteria 95.3 0.31 6.6E-06 42.8 11.2 122 346-482 26-158 (160)
362 cd03418 GRX_GRXb_1_3_like Glut 95.3 0.084 1.8E-06 40.5 7.1 60 41-131 2-62 (75)
363 cd03019 DsbA_DsbA DsbA family, 95.2 0.078 1.7E-06 48.4 7.9 40 37-78 14-54 (178)
364 PF13462 Thioredoxin_4: Thiore 95.1 0.079 1.7E-06 47.5 7.6 55 29-83 3-58 (162)
365 cd03029 GRX_hybridPRX5 Glutare 95.1 0.097 2.1E-06 39.9 6.8 59 41-131 3-61 (72)
366 cd03027 GRX_DEP Glutaredoxin ( 95.0 0.11 2.3E-06 39.7 7.0 60 41-131 3-62 (73)
367 TIGR02183 GRXA Glutaredoxin, G 95.0 0.067 1.4E-06 42.5 5.8 65 361-451 2-68 (86)
368 TIGR02190 GlrX-dom Glutaredoxi 95.0 0.087 1.9E-06 41.0 6.4 63 357-451 6-68 (79)
369 PF04592 SelP_N: Selenoprotein 95.0 0.13 2.9E-06 48.0 8.5 114 16-133 7-125 (238)
370 PRK10329 glutaredoxin-like pro 95.0 0.32 7E-06 38.1 9.5 54 361-443 3-56 (81)
371 PHA03050 glutaredoxin; Provisi 94.8 0.058 1.3E-06 44.9 5.1 67 361-452 15-81 (108)
372 PF11009 DUF2847: Protein of u 94.6 0.24 5.1E-06 40.6 8.1 75 357-454 19-94 (105)
373 PF01216 Calsequestrin: Calseq 94.6 5.3 0.00012 39.8 18.6 308 40-489 54-372 (383)
374 cd03418 GRX_GRXb_1_3_like Glut 94.6 0.19 4.2E-06 38.4 7.4 60 361-451 2-62 (75)
375 TIGR02194 GlrX_NrdH Glutaredox 94.5 0.33 7.1E-06 36.9 8.5 53 362-443 2-54 (72)
376 TIGR02181 GRX_bact Glutaredoxi 94.4 0.14 3E-06 39.7 6.4 60 361-451 1-60 (79)
377 TIGR02194 GlrX_NrdH Glutaredox 94.4 0.16 3.5E-06 38.6 6.5 53 42-123 2-54 (72)
378 PF05176 ATP-synt_10: ATP10 pr 94.3 0.48 1E-05 45.8 10.9 129 339-483 102-251 (252)
379 PF05988 DUF899: Bacterial pro 94.3 0.25 5.4E-06 45.6 8.4 108 20-132 47-170 (211)
380 cd03023 DsbA_Com1_like DsbA fa 94.1 0.11 2.4E-06 45.9 5.9 40 37-79 4-44 (154)
381 cd03029 GRX_hybridPRX5 Glutare 94.1 0.22 4.9E-06 37.8 6.7 59 361-451 3-61 (72)
382 PF13462 Thioredoxin_4: Thiore 94.1 0.19 4.2E-06 44.9 7.5 49 352-401 7-55 (162)
383 cd03023 DsbA_Com1_like DsbA fa 94.0 0.1 2.2E-06 46.1 5.5 40 357-400 5-44 (154)
384 cd03027 GRX_DEP Glutaredoxin ( 94.0 0.27 5.9E-06 37.5 7.0 61 361-452 3-63 (73)
385 KOG0541 Alkyl hydroperoxide re 93.9 0.22 4.8E-06 43.2 6.8 79 14-94 10-101 (171)
386 TIGR00365 monothiol glutaredox 93.9 0.26 5.6E-06 40.1 7.0 61 40-131 14-78 (97)
387 PRK10638 glutaredoxin 3; Provi 93.8 0.27 5.8E-06 38.7 6.9 60 41-131 4-63 (83)
388 PRK10954 periplasmic protein d 93.6 0.24 5.3E-06 46.6 7.5 39 37-77 36-78 (207)
389 TIGR02189 GlrX-like_plant Glut 93.6 0.16 3.4E-06 41.6 5.3 63 361-451 10-72 (99)
390 KOG3414 Component of the U4/U6 93.4 0.44 9.6E-06 39.7 7.5 62 357-444 23-84 (142)
391 COG1331 Highly conserved prote 93.4 0.54 1.2E-05 51.0 10.3 78 357-453 43-124 (667)
392 COG0678 AHP1 Peroxiredoxin [Po 93.3 0.3 6.6E-06 42.2 6.6 116 13-132 3-143 (165)
393 COG4312 Uncharacterized protei 93.3 0.19 4.2E-06 46.1 5.8 92 340-435 54-153 (247)
394 PF09695 YtfJ_HI0045: Bacteria 93.2 2.9 6.4E-05 36.8 12.6 129 15-158 3-154 (160)
395 cd03028 GRX_PICOT_like Glutare 93.2 0.41 8.9E-06 38.3 7.1 54 47-131 21-74 (90)
396 KOG1672 ATP binding protein [P 93.0 0.48 1E-05 42.8 7.7 72 356-455 83-154 (211)
397 PRK10638 glutaredoxin 3; Provi 92.7 0.67 1.5E-05 36.3 7.6 61 361-452 4-64 (83)
398 COG0695 GrxC Glutaredoxin and 92.6 0.57 1.2E-05 36.6 6.9 56 41-123 3-59 (80)
399 KOG0913 Thiol-disulfide isomer 92.4 0.052 1.1E-06 50.4 0.9 69 359-453 41-109 (248)
400 cd02249 ZZ Zinc finger, ZZ typ 92.2 0.083 1.8E-06 36.3 1.5 32 509-540 1-33 (46)
401 cd03028 GRX_PICOT_like Glutare 92.2 0.57 1.2E-05 37.5 6.6 64 357-451 7-74 (90)
402 PRK15317 alkyl hydroperoxide r 92.1 0.34 7.4E-06 52.6 7.0 62 35-123 113-175 (517)
403 KOG1752 Glutaredoxin and relat 92.0 0.86 1.9E-05 37.4 7.5 64 40-131 15-78 (104)
404 TIGR00365 monothiol glutaredox 92.0 0.68 1.5E-05 37.6 7.0 65 357-452 11-79 (97)
405 COG0678 AHP1 Peroxiredoxin [Po 91.9 0.93 2E-05 39.3 7.8 96 355-454 35-145 (165)
406 PF11009 DUF2847: Protein of u 91.1 1.6 3.4E-05 35.9 8.0 72 40-134 22-94 (105)
407 KOG2603 Oligosaccharyltransfer 91.0 1.3 2.8E-05 43.3 8.6 86 181-287 41-136 (331)
408 PF05176 ATP-synt_10: ATP10 pr 91.0 1.7 3.8E-05 42.0 9.7 117 16-134 98-233 (252)
409 cd03019 DsbA_DsbA DsbA family, 90.9 0.31 6.8E-06 44.3 4.4 41 356-399 14-54 (178)
410 PF02966 DIM1: Mitosis protein 90.8 1.7 3.8E-05 36.9 8.2 59 357-442 20-78 (133)
411 COG0695 GrxC Glutaredoxin and 90.6 1.3 2.8E-05 34.5 7.0 20 361-380 3-22 (80)
412 KOG1672 ATP binding protein [P 90.5 0.5 1.1E-05 42.7 5.0 69 37-133 83-152 (211)
413 PRK10824 glutaredoxin-4; Provi 90.3 0.95 2.1E-05 38.0 6.4 54 47-131 28-81 (115)
414 cd03031 GRX_GRX_like Glutaredo 89.7 3.6 7.8E-05 36.2 9.8 14 368-381 15-28 (147)
415 COG4312 Uncharacterized protei 89.6 0.77 1.7E-05 42.3 5.5 85 26-115 60-153 (247)
416 KOG1752 Glutaredoxin and relat 89.6 1.3 2.8E-05 36.4 6.4 63 361-451 16-78 (104)
417 KOG3414 Component of the U4/U6 89.6 2 4.3E-05 36.0 7.4 75 27-127 10-87 (142)
418 PF00130 C1_1: Phorbol esters/ 89.1 0.37 8E-06 34.1 2.6 35 506-540 9-46 (53)
419 PF05768 DUF836: Glutaredoxin- 89.1 1.8 3.9E-05 33.8 6.8 56 361-445 2-57 (81)
420 TIGR03140 AhpF alkyl hydropero 88.8 0.95 2.1E-05 49.1 6.8 62 35-123 114-176 (515)
421 cd02983 P5_C P5 family, C-term 88.3 3.1 6.7E-05 35.8 8.3 92 358-488 21-118 (130)
422 cd02335 ZZ_ADA2 Zinc finger, Z 87.6 0.36 7.8E-06 33.7 1.7 30 509-538 1-32 (49)
423 PF13911 AhpC-TSA_2: AhpC/TSA 87.6 2.4 5.1E-05 35.5 7.1 52 380-435 3-54 (115)
424 PF05768 DUF836: Glutaredoxin- 87.3 3.4 7.5E-05 32.2 7.4 56 41-125 2-57 (81)
425 PF13778 DUF4174: Domain of un 87.3 5.6 0.00012 33.6 9.1 89 352-453 3-94 (118)
426 PRK10824 glutaredoxin-4; Provi 87.1 1.3 2.8E-05 37.2 5.0 64 357-451 14-81 (115)
427 COG4545 Glutaredoxin-related p 87.0 1.8 3.8E-05 32.6 5.0 70 362-452 5-77 (85)
428 COG4545 Glutaredoxin-related p 86.3 3.5 7.7E-05 31.1 6.2 73 42-132 5-77 (85)
429 cd02341 ZZ_ZZZ3 Zinc finger, Z 85.6 0.47 1E-05 32.9 1.3 31 509-539 1-35 (48)
430 PF13778 DUF4174: Domain of un 84.5 14 0.00031 31.1 10.2 103 32-158 2-108 (118)
431 PF02966 DIM1: Mitosis protein 84.5 6.8 0.00015 33.4 8.0 61 37-124 19-80 (133)
432 cd00029 C1 Protein kinase C co 84.4 0.69 1.5E-05 32.1 1.9 34 507-540 10-46 (50)
433 PRK10954 periplasmic protein d 84.3 1.1 2.3E-05 42.2 3.7 42 356-400 36-80 (207)
434 PF13831 PHD_2: PHD-finger; PD 84.3 0.3 6.5E-06 31.5 -0.1 18 522-539 4-21 (36)
435 cd02343 ZZ_EF Zinc finger, ZZ 83.8 0.57 1.2E-05 32.3 1.1 30 510-539 2-32 (48)
436 PRK12759 bifunctional gluaredo 83.4 2.5 5.4E-05 44.3 6.3 63 41-123 4-66 (410)
437 KOG3507 DNA-directed RNA polym 83.2 0.57 1.2E-05 33.1 1.0 29 507-535 19-50 (62)
438 KOG2603 Oligosaccharyltransfer 83.0 12 0.00027 36.7 10.2 87 344-451 47-141 (331)
439 PF10571 UPF0547: Uncharacteri 82.2 0.77 1.7E-05 27.2 1.1 23 510-532 2-24 (26)
440 cd02342 ZZ_UBA_plant Zinc fing 81.0 0.99 2.1E-05 30.1 1.4 31 510-540 2-34 (43)
441 PRK12759 bifunctional gluaredo 80.4 3.5 7.6E-05 43.2 6.1 63 361-443 4-66 (410)
442 smart00291 ZnF_ZZ Zinc-binding 79.7 1.8 3.9E-05 29.4 2.4 33 507-539 3-36 (44)
443 cd03073 PDI_b'_ERp72_ERp57 PDI 79.0 7.1 0.00015 32.5 6.4 51 372-448 33-88 (111)
444 PRK14890 putative Zn-ribbon RN 78.6 1.5 3.3E-05 31.4 1.8 24 508-531 25-57 (59)
445 COG1331 Highly conserved prote 78.2 3.3 7.1E-05 45.1 5.1 97 176-291 12-122 (667)
446 PF01216 Calsequestrin: Calseq 78.0 27 0.0006 35.0 10.8 73 357-454 51-128 (383)
447 PF07449 HyaE: Hydrogenase-1 e 77.5 2.4 5.3E-05 34.9 3.0 26 427-453 72-97 (107)
448 COG2888 Predicted Zn-ribbon RN 76.1 1.1 2.3E-05 32.1 0.5 25 507-531 26-59 (61)
449 cd03031 GRX_GRX_like Glutaredo 75.4 12 0.00027 32.8 7.1 29 48-84 15-43 (147)
450 cd03060 GST_N_Omega_like GST_N 75.0 16 0.00035 27.2 6.9 31 43-80 3-34 (71)
451 PF07912 ERp29_N: ERp29, N-ter 74.9 23 0.00049 29.9 8.0 94 196-319 20-116 (126)
452 COG3054 Predicted transcriptio 73.9 22 0.00048 30.9 7.9 123 348-485 50-183 (184)
453 cd02337 ZZ_CBP Zinc finger, ZZ 72.6 1.6 3.4E-05 29.1 0.6 30 509-539 1-31 (41)
454 cd02344 ZZ_HERC2 Zinc finger, 71.6 2.9 6.4E-05 28.4 1.7 30 510-539 2-33 (45)
455 cd03072 PDI_b'_ERp44 PDIb' fam 70.8 35 0.00075 28.3 8.5 51 372-448 29-84 (111)
456 cd03060 GST_N_Omega_like GST_N 70.6 13 0.00029 27.7 5.5 60 363-453 3-62 (71)
457 PF00569 ZZ: Zinc finger, ZZ t 70.5 1.5 3.3E-05 30.0 0.2 32 507-538 3-36 (46)
458 smart00109 C1 Protein kinase C 69.4 1.9 4.1E-05 29.6 0.5 35 506-540 9-45 (49)
459 cd03071 PDI_b'_NRX PDIb' famil 69.1 35 0.00077 27.9 7.6 72 217-321 39-114 (116)
460 KOG3171 Conserved phosducin-li 65.7 41 0.00089 31.2 8.3 85 341-454 139-227 (273)
461 PF07754 DUF1610: Domain of un 65.1 5.8 0.00013 23.0 1.8 13 518-530 12-24 (24)
462 KOG2507 Ubiquitin regulatory p 64.6 44 0.00095 34.3 9.0 28 427-454 67-94 (506)
463 PF03604 DNA_RNApol_7kD: DNA d 64.1 2.2 4.7E-05 26.7 -0.0 25 509-533 1-28 (32)
464 KOG0954 PHD finger protein [Ge 64.0 6.1 0.00013 43.1 3.1 37 501-537 264-303 (893)
465 cd02977 ArsC_family Arsenate R 63.4 16 0.00035 29.9 5.1 20 42-61 2-21 (105)
466 cd02338 ZZ_PCMF_like Zinc fing 62.2 5.7 0.00012 27.6 1.8 30 510-539 2-33 (49)
467 PHA03075 glutaredoxin-like pro 61.4 12 0.00026 31.0 3.7 29 358-386 2-30 (123)
468 cd03036 ArsC_like Arsenate Red 60.2 5.5 0.00012 33.2 1.7 32 42-81 2-33 (111)
469 cd02978 KaiB_like KaiB-like fa 58.9 41 0.00088 25.6 5.9 61 41-126 4-64 (72)
470 smart00249 PHD PHD zinc finger 58.4 15 0.00032 24.5 3.4 43 511-562 2-45 (47)
471 cd03035 ArsC_Yffb Arsenate Red 58.0 24 0.00053 29.0 5.2 45 42-94 2-49 (105)
472 COG1651 DsbG Protein-disulfide 57.6 20 0.00043 34.4 5.4 45 344-388 71-115 (244)
473 PHA00626 hypothetical protein 57.0 8.1 0.00018 27.3 1.7 18 519-536 20-37 (59)
474 COG1651 DsbG Protein-disulfide 57.0 39 0.00084 32.4 7.3 45 24-68 70-115 (244)
475 cd03067 PDI_b_PDIR_N PDIb fami 56.4 49 0.0011 26.9 6.2 68 198-290 20-91 (112)
476 KOG4498 Uncharacterized conser 56.0 12 0.00026 33.9 3.1 55 24-79 35-92 (197)
477 cd02334 ZZ_dystrophin Zinc fin 55.9 8.2 0.00018 26.8 1.7 30 510-539 2-33 (49)
478 PF07449 HyaE: Hydrogenase-1 e 54.1 16 0.00035 30.1 3.4 25 107-132 72-96 (107)
479 TIGR01617 arsC_related transcr 53.5 28 0.00062 29.1 5.0 34 42-83 2-35 (117)
480 PF13911 AhpC-TSA_2: AhpC/TSA 53.4 25 0.00053 29.2 4.6 54 59-116 2-55 (115)
481 PHA03075 glutaredoxin-like pro 52.7 22 0.00048 29.5 3.9 28 39-66 2-30 (123)
482 cd03067 PDI_b_PDIR_N PDIb fami 52.4 69 0.0015 26.1 6.5 67 40-131 22-92 (112)
483 COG2761 FrnE Predicted dithiol 51.3 35 0.00075 32.3 5.5 29 199-227 6-34 (225)
484 PRK01655 spxA transcriptional 49.8 35 0.00076 29.3 5.0 45 41-93 2-49 (131)
485 cd02978 KaiB_like KaiB-like fa 49.5 66 0.0014 24.4 5.7 62 360-446 3-64 (72)
486 COG3019 Predicted metal-bindin 49.4 1.7E+02 0.0037 25.4 8.7 62 359-454 26-90 (149)
487 cd03036 ArsC_like Arsenate Red 49.4 13 0.00027 31.0 2.1 20 362-381 2-21 (111)
488 PF13909 zf-H2C2_5: C2H2-type 49.1 9.4 0.0002 21.7 1.0 10 523-532 1-10 (24)
489 KOG3171 Conserved phosducin-li 49.0 43 0.00093 31.1 5.5 64 40-132 162-225 (273)
490 KOG4582 Uncharacterized conser 48.9 8.6 0.00019 37.9 1.2 33 508-540 152-186 (278)
491 KOG4498 Uncharacterized conser 48.5 28 0.00061 31.7 4.2 56 343-400 35-92 (197)
492 TIGR01617 arsC_related transcr 48.2 41 0.00089 28.2 5.2 44 362-414 2-48 (117)
493 PRK11788 tetratricopeptide rep 48.0 25 0.00055 36.1 4.7 24 506-529 352-375 (389)
494 cd03032 ArsC_Spx Arsenate Redu 47.6 57 0.0012 27.2 5.9 44 42-93 3-49 (115)
495 smart00659 RPOLCX RNA polymera 47.6 12 0.00027 25.3 1.5 26 508-533 2-30 (44)
496 PF13743 Thioredoxin_5: Thiore 47.0 33 0.00071 31.2 4.7 35 363-400 2-36 (176)
497 KOG0957 PHD finger protein [Ge 46.4 18 0.00038 37.7 3.0 56 506-563 117-175 (707)
498 PF13917 zf-CCHC_3: Zinc knuck 45.8 8.9 0.00019 25.7 0.5 19 508-527 4-22 (42)
499 KOG0541 Alkyl hydroperoxide re 45.5 29 0.00062 30.6 3.7 101 349-454 34-151 (171)
500 TIGR03759 conj_TIGR03759 integ 43.8 2.5E+02 0.0053 26.0 9.5 82 40-128 111-197 (200)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-29 Score=257.51 Aligned_cols=340 Identities=24% Similarity=0.365 Sum_probs=216.5
Q ss_pred ccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCC
Q 008336 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPW 95 (569)
Q Consensus 18 ~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~ 95 (569)
++...++.+++..+...-.... +||.||||||+||++++|++.++++.+++.+ .+.+..|++...
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~------------- 88 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE------------- 88 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-------------
Confidence 3445555555555555444556 9999999999999999999999999999875 567777766644
Q ss_pred cccccCCchhHHHHHHhcCCCCccEEEEECCCCcE-EEcCCcce--------eecccCCCCCc-cHHHHHHHHHHHH---
Q 008336 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV-LSDGGVEI--------IREYGVEGYPF-TVERIKEMKEQEE--- 162 (569)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i-~~~~~~~~--------~~~~~~~~~~~-~~~~i~~~~~~~~--- 162 (569)
..++..|+|+++||+.++ ++|+. ..+.|.+. ..+.++...+. +.+.+..++....
T Consensus 89 -----------~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~v 156 (493)
T KOG0190|consen 89 -----------SDLASKYEVRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVV 156 (493)
T ss_pred -----------hhhHhhhcCCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEE
Confidence 369999999999999999 88985 66666542 12223222221 2233333332210
Q ss_pred -----------------HHHhhccccccccc----------------------------------------------CCC
Q 008336 163 -----------------RAKREQSLRSVLTS----------------------------------------------HSR 179 (569)
Q Consensus 163 -----------------~~~~~~~l~~~~~~----------------------------------------------~~~ 179 (569)
+....+.+.+.+++ ...
T Consensus 157 ig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~ 236 (493)
T KOG0190|consen 157 IGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSL 236 (493)
T ss_pred EEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcc
Confidence 00111111111111 011
Q ss_pred ceeecCCCceee-eccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCccc
Q 008336 180 DFVISSDGRKIS-VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLA 258 (569)
Q Consensus 180 d~~~~~~~~~~~-~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~ 258 (569)
+++...+.+... ++...-+.-..+|....|.......+.+.+++++++++ +.|+.+|.+.
T Consensus 237 plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~-----l~Fi~~d~e~-------------- 297 (493)
T KOG0190|consen 237 PLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGK-----LRFILIDPES-------------- 297 (493)
T ss_pred cccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccc-----eEEEEEChHH--------------
Confidence 111111110000 00000022233344444445566666777777777664 5566554332
Q ss_pred ccCCchhHHHHHhhcccC--CCc-eEEEECCCC-CchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhh
Q 008336 259 LPFKDKSREKLARYFELS--TLP-TLVIIGPDG-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVL 334 (569)
Q Consensus 259 ~~~~d~~~~~l~~~f~v~--~~P-tlvi~~~~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 334 (569)
..+.++.||+. ..| .+++++.++ ++.... -.++.+.++.|......+..++.++|+.
T Consensus 298 -------~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~------------e~~~~~~ie~f~~~~l~Gk~~p~~kSqp 358 (493)
T KOG0190|consen 298 -------FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEE------------EELDQENIESFVKDFLDGKVKPHLKSQP 358 (493)
T ss_pred -------hhHHHHhcCcccccCCeeEEeeccccccccCcc------------ccccHHHHHHHHHHHhcCccccccccCC
Confidence 45688999997 456 444554443 333221 1457778999999999999999999999
Q ss_pred ccCCcc----cee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLD----FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~----f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
++.+.+ .++ ..+...+.+++ +|.|||.||||||+||+++.|.+++|++++++. -.||...+|.+.+
T Consensus 359 iPe~~~~~pVkvvVgknfd~iv~de--~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAKmDaTaN---- 429 (493)
T KOG0190|consen 359 IPEDNDRSPVKVVVGKNFDDIVLDE--GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAKMDATAN---- 429 (493)
T ss_pred CCcccccCCeEEEeecCHHHHhhcc--ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEEeccccc----
Confidence 887643 344 88888888887 899999999999999999999999999999874 4677777887654
Q ss_pred HHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCC
Q 008336 410 FFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448 (569)
Q Consensus 410 ~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G 448 (569)
++ ....+.++||++++-.++
T Consensus 430 ------------------d~-~~~~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 430 ------------------DV-PSLKVDGFPTILFFPAGH 449 (493)
T ss_pred ------------------cC-ccccccccceEEEecCCC
Confidence 12 345677899999995544
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=99.96 E-value=3.8e-28 Score=260.38 Aligned_cols=367 Identities=19% Similarity=0.269 Sum_probs=222.7
Q ss_pred cCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCC
Q 008336 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (569)
Q Consensus 25 ~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (569)
.++.+.++..--+++ ++|.|||+||++|+++.|.+.++++.+...+ ++.+..|+++...
T Consensus 36 ~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~------------------- 96 (477)
T PTZ00102 36 VLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM------------------- 96 (477)
T ss_pred EcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-------------------
Confidence 344443333223577 9999999999999999999999999887543 5888888877653
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcce-------eecc-cCCCCCc-cHHHHHHHHH--------------
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEI-------IREY-GVEGYPF-TVERIKEMKE-------------- 159 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~-------~~~~-~~~~~~~-~~~~i~~~~~-------------- 159 (569)
.+++.|+|.++|++++++.++.+ ...|.+- +... +...... +..++..+.+
T Consensus 97 -----~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (477)
T PTZ00102 97 -----ELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKD 170 (477)
T ss_pred -----HHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCC
Confidence 58999999999999999654444 4444321 1111 1000000 1111111000
Q ss_pred ------HHHHHHhh-cc----------------------------------cccccccCCCceeecCCCceeeeccccCc
Q 008336 160 ------QEERAKRE-QS----------------------------------LRSVLTSHSRDFVISSDGRKISVSDLEGK 198 (569)
Q Consensus 160 ------~~~~~~~~-~~----------------------------------l~~~~~~~~~d~~~~~~~~~~~~~~~~gk 198 (569)
-...+... .. +..|+.....|.+...+.++...+...++
T Consensus 171 ~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~ 250 (477)
T PTZ00102 171 SELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGK 250 (477)
T ss_pred cHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCc
Confidence 00000000 00 01111111112222222222222222334
Q ss_pred EEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHH-HHHhhcccCC
Q 008336 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE-KLARYFELST 277 (569)
Q Consensus 199 ~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~-~l~~~f~v~~ 277 (569)
.++.++. .+.....+.+.+.+++++++++ +.|+.+|.+. .. .+.+.||+..
T Consensus 251 ~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~-----~~f~~vd~~~---------------------~~~~~~~~~gi~~ 302 (477)
T PTZ00102 251 DLVWFCG--TTEDYDKYKSVVRKVARKLREK-----YAFVWLDTEQ---------------------FGSHAKEHLLIEE 302 (477)
T ss_pred cEEEEec--CHHHHHHHHHHHHHHHHhccCc-----eEEEEEechh---------------------cchhHHHhcCccc
Confidence 4433332 2344556778888888888765 6677776654 23 3678999999
Q ss_pred CceEEEECCCCCchhhhhHHHHHhhCCCCCC-CChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCceecc-c
Q 008336 278 LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFP-FTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKVPVS-D 354 (569)
Q Consensus 278 ~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v~l~-~ 354 (569)
+|++++....|++..... ..+ .+.+.+..|.....++...+++++...+...+-.+ ...|..+.-. .
T Consensus 303 ~P~~~i~~~~~~y~~~~~----------~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~ 372 (477)
T PTZ00102 303 FPGLAYQSPAGRYLLPPA----------KESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVF 372 (477)
T ss_pred CceEEEEcCCcccCCCcc----------ccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHh
Confidence 999999886665543211 011 47899999999999998888888877655433222 3334433321 1
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
-.||+|+|+|||+||++|+.+.|.|+++++.+++. ..+.++.++.+.+. ..++.|+
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~-----------------------~~~~~~~ 428 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANE-----------------------TPLEEFS 428 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCc-----------------------cchhcCC
Confidence 23899999999999999999999999999988753 24666666665443 3578899
Q ss_pred CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCccc
Q 008336 435 VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV 492 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~ 492 (569)
++++||++++++++++..+. .| ....+.+.+.|++.+....++.
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~-------~G-------~~~~~~l~~~i~~~~~~~~~~~ 472 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPY-------EG-------ERTVEGFKEFVNKHATNPFEDD 472 (477)
T ss_pred CcccCeEEEEECCCcceeEe-------cC-------cCCHHHHHHHHHHcCCCCcccc
Confidence 99999999998777653331 11 2234566777777665544333
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.93 E-value=3.3e-24 Score=229.27 Aligned_cols=347 Identities=19% Similarity=0.366 Sum_probs=200.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
+++ ++|.|||+||++|+++.|.+.++++.+...+ ++.++.|+++... .+++.|+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~------------------------~l~~~~~ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK------------------------DLAQKYG 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH------------------------HHHHhCC
Confidence 567 9999999999999999999999999987553 5888888888653 5899999
Q ss_pred CCCccEEEEECCCCcE--EEcCCcce-------eecc-cCCCCCc-cHHHHHHHHHHHH--------------------H
Q 008336 115 VMGIPHLVILDENGKV--LSDGGVEI-------IREY-GVEGYPF-TVERIKEMKEQEE--------------------R 163 (569)
Q Consensus 115 v~~~P~~~lid~~G~i--~~~~~~~~-------~~~~-~~~~~~~-~~~~i~~~~~~~~--------------------~ 163 (569)
|.++|+++++ ++|+. ....|..- +... +...... +.+++..++.... .
T Consensus 73 i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 151 (462)
T TIGR01130 73 VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSV 151 (462)
T ss_pred CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHH
Confidence 9999999999 45654 44444221 1111 1111111 2333443332210 0
Q ss_pred HHhhccccc-ccccCC-----------Cc-eeecCCCceeeeccccCc------EEEEEEecCCcccchhhhHHHHHHHH
Q 008336 164 AKREQSLRS-VLTSHS-----------RD-FVISSDGRKISVSDLEGK------TIGLYFSMSSYKASAEFTPRLVEVYE 224 (569)
Q Consensus 164 ~~~~~~l~~-~~~~~~-----------~d-~~~~~~~~~~~~~~~~gk------~v~l~f~~~~~~~c~~~~~~~~~~~~ 224 (569)
+........ +..... .. .++...........+.|. .+.-|+.....|.+..+++....
T Consensus 152 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~--- 228 (462)
T TIGR01130 152 AEKLRDVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAA--- 228 (462)
T ss_pred HHHhhhccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchh---
Confidence 000000000 000000 00 000000000000000110 11123444455566666554322
Q ss_pred HHhcCCCceEEEEeeccccH---H----HHHHHhcCCC--cccccCCch-hHHHHHhhcccC--CCceEEEECCCCCchh
Q 008336 225 KLKGKGESFEIVLISLDDEE---E----SFKRDLGSMP--WLALPFKDK-SREKLARYFELS--TLPTLVIIGPDGKTLH 292 (569)
Q Consensus 225 ~~~~~~~~~ei~~v~~d~~~---~----~~~~~~~~~~--~~~~~~~d~-~~~~l~~~f~v~--~~Ptlvi~~~~g~~~~ 292 (569)
.+...+ ++.++++..+.+. . .+++..+++. ++.+...|. ....+++.|++. .+|++++++.++...+
T Consensus 229 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y 307 (462)
T TIGR01130 229 KYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKY 307 (462)
T ss_pred hHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCccccc
Confidence 111222 3334444443322 1 2222222332 343443332 367889999998 6999999987752111
Q ss_pred hhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcc-c--ee-cCCCCceecccCCCCEEEEEEecCC
Q 008336 293 SNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLD-F--VV-GKNGGKVPVSDLAGKTILLYFSAHW 368 (569)
Q Consensus 293 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-f--~~-~~~g~~v~l~~~~gk~vll~F~a~w 368 (569)
. .....++.+.+.++.....++...+..++...+...+ - .+ ..+.+.+.++ .++++||+||++|
T Consensus 308 ~----------~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~--~~~~vlv~f~a~w 375 (462)
T TIGR01130 308 P----------MDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLD--ETKDVLVEFYAPW 375 (462)
T ss_pred C----------CCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhcc--CCCeEEEEEECCC
Confidence 1 1111468999999999999999888888877665321 1 12 3333443333 3799999999999
Q ss_pred ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCC
Q 008336 369 CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSG 448 (569)
Q Consensus 369 C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G 448 (569)
|++|+.+.|.+.++++.++.....+.++.++++.+. +.. ++++++|+++++.+++
T Consensus 376 C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 376 CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFPTIKFVPAGK 430 (462)
T ss_pred CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccCEEEEEeCCC
Confidence 999999999999999999862124777777776442 333 8999999999996555
Q ss_pred c
Q 008336 449 R 449 (569)
Q Consensus 449 ~ 449 (569)
+
T Consensus 431 ~ 431 (462)
T TIGR01130 431 K 431 (462)
T ss_pred C
Confidence 4
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.91 E-value=6.1e-24 Score=186.08 Aligned_cols=130 Identities=54% Similarity=1.107 Sum_probs=119.6
Q ss_pred cceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCccc
Q 008336 340 DFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLAL 419 (569)
Q Consensus 340 ~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 419 (569)
+|+.+.+|+.+++++++||+|||+||++||++|++++|.|.+++++++++..+++|++|++|.+.+.+++++++++|+.+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 46778999999999999999999999999999999999999999999865447999999999999999999999999888
Q ss_pred ccCc-hhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCC
Q 008336 420 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPF 469 (569)
Q Consensus 420 ~~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~ 469 (569)
|+.. +....+++.|+|.++|+++|||++|+++.+.+++++..+|+.+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 8765 5567899999999999999999999999999999999999999997
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.90 E-value=1.9e-23 Score=182.55 Aligned_cols=119 Identities=32% Similarity=0.649 Sum_probs=105.9
Q ss_pred CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-----CCCeEEEEEeCCCChhHHHHHHhcCC--Ccccc
Q 008336 348 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-----NESLEVVFISSDRDQTSFDEFFKGMP--WLALP 420 (569)
Q Consensus 348 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-----~~~~~vv~is~d~~~~~~~~~~~~~~--~~~~~ 420 (569)
..+++++++||+|+|+|||+||++|++++|.|.+++++++++ ..+++||+|+.|.+.+.+++|+++++ |+.+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 345778999999999999999999999999999999988763 23699999999998888999999987 77788
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCC
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEA 466 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~ 466 (569)
+..+....+++.|++.++|+++|||++|+|+.++++..+..+|.++
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 8877677899999999999999999999999999999988887544
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.88 E-value=2.5e-22 Score=175.83 Aligned_cols=128 Identities=52% Similarity=1.030 Sum_probs=112.3
Q ss_pred ceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC-CCccc
Q 008336 341 FVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM-PWLAL 419 (569)
Q Consensus 341 f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~-~~~~~ 419 (569)
|++|.+ +++++++++||++||+||++||++|+.++|.|++++++++++..++.|++|++|.+.+.+++|++++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 445555 7999999999999999999999999999999999999998643469999999999988999999999 67777
Q ss_pred ccCc-hhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhh-cCCCCCCC
Q 008336 420 PFGD-ARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAV-HGAEAYPF 469 (569)
Q Consensus 420 ~~~~-d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~-~g~~~~p~ 469 (569)
++.. .....+++.|+|.++|+++|||++|+|+.+++...+.. +|+.+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 7765 34567888999999999999999999999998888655 99999997
No 7
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.88 E-value=3.2e-22 Score=175.19 Aligned_cols=129 Identities=55% Similarity=1.134 Sum_probs=116.6
Q ss_pred CceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCccc
Q 008336 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAV 98 (569)
Q Consensus 21 df~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 98 (569)
||+.+.+|+.+++++++|| +||+||++||++|+.++|.|.++++++++++ +++|++|++|.+.+.+.+++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 5788899999999999999 9999999999999999999999999998653 5999999999999999999999988777
Q ss_pred ccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCc
Q 008336 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPF 149 (569)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 149 (569)
++.+.+....+.+.|++.++|+++|||++|+++.+.+..++..++...|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 776644556789999999999999999999999999988888888888875
No 8
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.87 E-value=2.1e-22 Score=175.93 Aligned_cols=115 Identities=29% Similarity=0.598 Sum_probs=99.4
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC------CEEEEEEeCCCCHHHHHHHHHhCC--Ccccc
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMP--WLAVP 99 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g------~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 99 (569)
+.+++++++|| ++|+|||+|||+|++++|.|.+++++++++. +++||+|+.|.+.+.+++|+++++ |..++
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 34577899999 9999999999999999999999999887531 599999999999888999999998 55566
Q ss_pred cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccC
Q 008336 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGV 144 (569)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~ 144 (569)
+.+.. ...+.+.|++.++|+++|||++|+|+.+++...|..+|.
T Consensus 96 ~~~~~-~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~ 139 (146)
T cd03008 96 FEDEF-RRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139 (146)
T ss_pred ccchH-HHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHH
Confidence 65532 347899999999999999999999999999888877764
No 9
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.84 E-value=8.6e-21 Score=166.14 Aligned_cols=126 Identities=47% Similarity=0.966 Sum_probs=106.1
Q ss_pred eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHHhCC-Ccccc
Q 008336 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMP-WLAVP 99 (569)
Q Consensus 23 ~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-g~~~vv~v~~d~~~~~~~~~~~~~~-~~~~~ 99 (569)
+++.+ +++++++++|| ++|+|||+||++|+.++|.|++++++++++ .+++|++|++|.+.+.+++|+++++ |..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 33434 59999999999 999999999999999999999999999865 2599999999999999999999994 55666
Q ss_pred cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceee-cccCCCCCc
Q 008336 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIR-EYGVEGYPF 149 (569)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~-~~~~~~~~~ 149 (569)
+.+......+.+.|++.++|+++|||++|+|+.+++.+.+. +++...|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 65534445788899999999999999999999998876554 477777775
No 10
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.84 E-value=2.2e-20 Score=160.64 Aligned_cols=121 Identities=48% Similarity=0.912 Sum_probs=112.6
Q ss_pred cCCCCceecc-cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc--CCCcccc
Q 008336 344 GKNGGKVPVS-DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG--MPWLALP 420 (569)
Q Consensus 344 ~~~g~~v~l~-~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~--~~~~~~~ 420 (569)
+.+|..+..+ .++||+|.++|.|.|||||+.+.|.|.++|+++++++..++||+||.|++.+++.+|+.. ++|+.+|
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIP 98 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEec
Confidence 6777777666 789999999999999999999999999999999987778999999999999999999985 6799999
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCC
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGA 464 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~ 464 (569)
+.++..+++.+.|.|.++|++++++++|.++.++++.++..+|.
T Consensus 99 f~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 99 FGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 99999999999999999999999999999999999999988873
No 11
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.81 E-value=9.6e-20 Score=156.66 Aligned_cols=123 Identities=36% Similarity=0.643 Sum_probs=113.9
Q ss_pred eecCCCceeeec-cccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcC--CCccc
Q 008336 182 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS--MPWLA 258 (569)
Q Consensus 182 ~~~~~~~~~~~~-~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~--~~~~~ 258 (569)
+.+.++..+..+ .+.||.|++||++.|||+|++|||.+.++|+.++..+.+|||+|||.|.+.+++..++.. ++|++
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 456667677766 589999999999999999999999999999999999999999999999999999999984 89999
Q ss_pred ccCCchhHHHHHhhcccCCCceEEEECCCCCchhhhhHHHHHhhCC
Q 008336 259 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGV 304 (569)
Q Consensus 259 ~~~~d~~~~~l~~~f~v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~ 304 (569)
+||++...+++.+.|++.++|++++++++|..+..+....|+.+|.
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 9999999999999999999999999999999999999999888874
No 12
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.79 E-value=6.3e-19 Score=150.32 Aligned_cols=110 Identities=26% Similarity=0.489 Sum_probs=95.7
Q ss_pred cccee-cCCCCceecccCC-CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 339 LDFVV-GKNGGKVPVSDLA-GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~-gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
|+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.|+++++++++ ++.++.++ |.+.+..++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEe-CCCHHHHHHHHHHhCC
Confidence 57777 8999999999997 99999999999999999999999999888754 38888775 6677889999999886
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
..+|+..+ ..+.+.|+++++|++++||++|+|++++
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 56776653 4588999999999999999999999984
No 13
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.79 E-value=8e-19 Score=144.40 Aligned_cols=93 Identities=45% Similarity=0.983 Sum_probs=84.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC--CCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM--PWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~--~~~~~~~~~d~~~~l~~~~~ 434 (569)
||+++|+||++||++|++++|.|.++++++++ ..+++||+|++|.+.+.++++++++ +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999994 3479999999999999999999988 89999999888889999999
Q ss_pred CCCccEEEEECCCCcE
Q 008336 435 VSGIPMLVAIGPSGRT 450 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i 450 (569)
|.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999987
No 14
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.79 E-value=1.2e-18 Score=155.54 Aligned_cols=115 Identities=32% Similarity=0.595 Sum_probs=100.7
Q ss_pred ccCccCCcee---cCCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 15 LSSSARDFLI---RSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 15 ~g~~~pdf~~---~~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
+|+++|+|.+ +.+|+.+++++++|| ++|+||++ |||+|+.++|.+.++++.+++++ +.+++|+.+.+.. +++|
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~-v~~v~v~~~~~~~-~~~~ 79 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG-VDVVGVSSDDDPP-VREF 79 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-CEEEEEEESSSHH-HHHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc-eEEEEecccCCHH-HHHH
Confidence 6999999943 489999999999999 99999999 99999999999999999998875 9999999998877 9999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCC---------CccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~i~~~ 133 (569)
+++.+..+..+.|.. ..+.+.|++. ++|++++||++|+|++.
T Consensus 80 ~~~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~ 130 (146)
T PF08534_consen 80 LKKYGINFPVLSDPD--GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYR 130 (146)
T ss_dssp HHHTTTTSEEEEETT--SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEE
T ss_pred HHhhCCCceEEechH--HHHHHHhCCccccccccCCeecEEEEEECCCEEEEE
Confidence 999877766666643 4799999998 99999999999999985
No 15
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.78 E-value=1.3e-18 Score=155.30 Aligned_cols=115 Identities=33% Similarity=0.626 Sum_probs=102.9
Q ss_pred Ccccee-c--CCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 338 DLDFVV-G--KNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 338 ~~~f~~-~--~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
.|+|.+ + .+|+++++++++||+++|+||++ |||+|+.++|.|.+++++++++ ++.+++|+.+.+.. ..+++++
T Consensus 6 ~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~-~~~~~~~ 82 (146)
T PF08534_consen 6 APDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPP-VREFLKK 82 (146)
T ss_dssp --CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHH-HHHHHHH
T ss_pred CCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHH-HHHHHHh
Confidence 478875 4 99999999999999999999999 9999999999999999998876 79999999998866 8888888
Q ss_pred CCCcccccCchhhHHHHHhcCCC---------CccEEEEECCCCcEEEccch
Q 008336 414 MPWLALPFGDARKASLSRKFKVS---------GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~---------~~Pt~~lid~~G~i~~~~~~ 456 (569)
++ ..+|+..|....+.+.|++. ++|+++|||++|+|++++.+
T Consensus 83 ~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 83 YG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp TT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred hC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeC
Confidence 65 78888889889999999998 99999999999999999643
No 16
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.78 E-value=7.1e-19 Score=152.72 Aligned_cols=108 Identities=24% Similarity=0.331 Sum_probs=97.3
Q ss_pred CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChhHHHHHHhcCCCcccc
Q 008336 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEFFKGMPWLALP 420 (569)
Q Consensus 346 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-----~~~~~~~~~~~~~~~~~~~ 420 (569)
.|+++++++++||++||+||++||++|++++|.|++++++++++ ++.|++|+.+ .+.+.+++|+++++ +.+|
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p 88 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP 88 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence 35789999999999999999999999999999999999999865 7999999863 46778899999888 6789
Q ss_pred cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 421 FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 421 ~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++.|....+.+.|++.++|+++|||++|+|++++.+
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 999999999999999999999999999999998643
No 17
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.76 E-value=6.8e-18 Score=143.94 Aligned_cols=109 Identities=24% Similarity=0.505 Sum_probs=91.7
Q ss_pred CCc-eecCCCceeecCCCC-Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCc
Q 008336 20 RDF-LIRSNGDQVKLDSLK-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~-gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~ 96 (569)
|+| +.+.+|+.+++++++ || ++|+||++||++|+.++|.+.++++++.. ++.++.++ +.+.+.++++++++++.
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~-~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLAS-DGEKAEHQRFLKKHGLE 77 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEe-CCCHHHHHHHHHHhCCC
Confidence 688 556899999999997 99 99999999999999999999999888753 47788775 66788999999999875
Q ss_pred ccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
..+.... ..+.+.|++.++|++++||++|+|++++
T Consensus 78 ~~p~~~~---~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 78 AFPYVLS---AELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCcEEec---HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 4443322 2478899999999999999999998753
No 18
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-17 Score=171.93 Aligned_cols=300 Identities=20% Similarity=0.266 Sum_probs=178.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|.||+|||++|+++.|.+.++++.++. .+.+..|+++.. ..+++.|+|+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~------------------------~~~~~~y~i~ 100 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEH------------------------KDLCEKYGIQ 100 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhh------------------------HHHHHhcCCc
Confidence 45 99999999999999999999999999975 366666666654 3699999999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeec-cc
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVS-DL 195 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~-~~ 195 (569)
++||+.++.++.+++...+ +.+.+.+.++....-. ..+..... .-++......+... ..
T Consensus 101 gfPtl~~f~~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~~~~~~~----~~v~~l~~~~~~~~~~~ 160 (383)
T KOG0191|consen 101 GFPTLKVFRPGKKPIDYSG------------PRNAESLAEFLIKELE----PSVKKLVE----GEVFELTKDNFDETVKD 160 (383)
T ss_pred cCcEEEEEcCCCceeeccC------------cccHHHHHHHHHHhhc----cccccccC----CceEEccccchhhhhhc
Confidence 9999999965534444332 2233444433322111 11111100 00222222222211 11
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
....+++.|++|||++|+.+.|.+.+++..++. +..+++..+ |.+. ...+++.++|
T Consensus 161 ~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~--d~~~---------------------~~~~~~~~~v 216 (383)
T KOG0191|consen 161 SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKI--DATV---------------------HKSLASRLEV 216 (383)
T ss_pred cCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEee--ccch---------------------HHHHhhhhcc
Confidence 335688889999999999999999999998875 344444444 4332 5678899999
Q ss_pred CCCceEEEECCCCC-chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHH-hhhhhhhhhccCCcc-cee-cCCCCcee
Q 008336 276 STLPTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKE-ESQTLESVLVSGDLD-FVV-GKNGGKVP 351 (569)
Q Consensus 276 ~~~Ptlvi~~~~g~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-f~~-~~~g~~v~ 351 (569)
..+|+++++.++.+ ...... -.+.+.+..+........ ..+.+.+... ++ +.. -.+.....
T Consensus 217 ~~~Pt~~~f~~~~~~~~~~~~------------~R~~~~i~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~ 281 (383)
T KOG0191|consen 217 RGYPTLKLFPPGEEDIYYYSG------------LRDSDSIVSFVEKKERRNIPEPELKEIED---KDTFSPTFLDTAEFL 281 (383)
T ss_pred cCCceEEEecCCCcccccccc------------cccHHHHHHHHHhhcCCCCCCcccccccC---ccccccchhhhhhhh
Confidence 99999999987766 211111 234566666665443321 0111111111 11 111 00111111
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.....-+..++.|+++||++|....|.+...+...... ...+-...++...- ..++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~~~~~~---------------------~~~~~ 338 (383)
T KOG0191|consen 282 DSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPD--LSKIKAAKLDCALL---------------------KSLCQ 338 (383)
T ss_pred hhhHHhhhhHhhhhcchhhcccccchhHHHHHhccccc--cccceeeccccccc---------------------cchhh
Confidence 11111246889999999999999999998887771101 12222222232210 11677
Q ss_pred hcCCCCccEEEEEC
Q 008336 432 KFKVSGIPMLVAIG 445 (569)
Q Consensus 432 ~~~v~~~Pt~~lid 445 (569)
...++++|++.+..
T Consensus 339 ~~~~~~~~~~~~~~ 352 (383)
T KOG0191|consen 339 KAIVRGYPTIKLYN 352 (383)
T ss_pred HhhhhcCceeEeec
Confidence 77888999988873
No 19
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.76 E-value=4.2e-18 Score=148.19 Aligned_cols=114 Identities=21% Similarity=0.287 Sum_probs=98.8
Q ss_pred Ccccee-cCCC--CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 338 DLDFVV-GKNG--GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 338 ~~~f~~-~~~g--~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
.|+|.+ +.+| ..+++++++||+++|+||++||++|++++|.|+++.+++ ++.|++|+.+.+.+.+++|++++
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~ 77 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARH 77 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhc
Confidence 478887 7777 889999999999999999999999999999999987664 38999999988889999999887
Q ss_pred CCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 415 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
.....++..|....+++.|++.++|++++||++|+++.+..+
T Consensus 78 ~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 78 GNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred CCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEec
Confidence 743334556777889999999999999999999999988543
No 20
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.76 E-value=5.8e-18 Score=146.65 Aligned_cols=114 Identities=33% Similarity=0.612 Sum_probs=102.0
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|+++|+| +.+.+|+.+++++++|| ++|.||++ ||++|+..++.|+++++++++.+ +.+++|+.| +.+..+++.+
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~-~~vi~is~d-~~~~~~~~~~ 78 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG-VQVIGISTD-DPEEIKQFLE 78 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-EEEEEEESS-SHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce-EEeeecccc-cccchhhhhh
Confidence 69999999 55689999999999999 99999999 99999999999999999999875 999999997 5668899999
Q ss_pred hCCCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEE
Q 008336 92 KMPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLS 132 (569)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~ 132 (569)
.+++.+..+.|.. ..+.+.|++. .+|+++|||++|+|++
T Consensus 79 ~~~~~~~~~~D~~--~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 79 EYGLPFPVLSDPD--GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHTCSSEEEEETT--SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhccccccccCcc--hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 8887766666644 3689999998 9999999999999986
No 21
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.76 E-value=5.7e-18 Score=160.18 Aligned_cols=134 Identities=16% Similarity=0.268 Sum_probs=102.8
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~ 407 (569)
...|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++++++ ++.||+|++| .+.++.
T Consensus 77 ~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei 154 (236)
T PLN02399 77 KSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEI 154 (236)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHH
Confidence 44689988 9999999999999999999999999999999999999999999876 7999999975 345678
Q ss_pred HHHH-hcCCCcccccCc--hhhH-HHHHhcC-------------CCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCC
Q 008336 408 DEFF-KGMPWLALPFGD--ARKA-SLSRKFK-------------VSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT 470 (569)
Q Consensus 408 ~~~~-~~~~~~~~~~~~--d~~~-~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~ 470 (569)
++|+ ++++ +.||++. |.++ .+...|+ ++..|++||||++|+|+.+..+. ..
T Consensus 155 ~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~-----------~~ 222 (236)
T PLN02399 155 KQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT-----------TS 222 (236)
T ss_pred HHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC-----------CC
Confidence 8887 4555 6777763 2222 2322222 45679999999999999986432 22
Q ss_pred HHHHHHHHHHhhhhhc
Q 008336 471 EERMKEIDGQYNEMAK 486 (569)
Q Consensus 471 ~~~~~~l~~~l~~l~~ 486 (569)
. ++|++.|+++++
T Consensus 223 ~---~~le~~I~~lL~ 235 (236)
T PLN02399 223 P---FQIEKDIQKLLA 235 (236)
T ss_pred H---HHHHHHHHHHhc
Confidence 2 356666776664
No 22
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.75 E-value=1.4e-17 Score=173.78 Aligned_cols=116 Identities=20% Similarity=0.332 Sum_probs=102.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-----CChhHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-----RDQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-----~~~~~~~~~ 410 (569)
..|+|.+ +.+|+.++++ +||+|||+|||+||++|++++|.|++++++++.+ ++.||+|+++ .+...++++
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~ 112 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKW 112 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHH
Confidence 4689987 9999999998 6999999999999999999999999999998744 5899999873 345677888
Q ss_pred HhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 411 FKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 411 ~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++.+++..+|+..|....+++.|+|+++|+++|||++|+|+.+..+
T Consensus 113 ~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G 158 (521)
T PRK14018 113 YAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKG 158 (521)
T ss_pred HHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeC
Confidence 8888877889998999999999999999999999999999998543
No 23
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.75 E-value=1.1e-17 Score=154.90 Aligned_cols=114 Identities=21% Similarity=0.335 Sum_probs=94.5
Q ss_pred ccccCccCCce-ecCC--CceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 13 SLLSSSARDFL-IRSN--GDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 13 ~~~g~~~pdf~-~~~~--g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
..+|.++|+|. .+.+ |+.++++.+ +|| ++|+|||+||++|++++|.|.++++ + ++.|++|+.+++.+.++
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~-~~~vi~v~~~~~~~~~~ 113 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q-GIRVVGMNYKDDRQKAI 113 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c-CCEEEEEECCCCHHHHH
Confidence 46799999994 4566 577777665 799 9999999999999999999988864 3 38999999988888999
Q ss_pred HHHHhCCCcccc-cCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++++..+.. +.|.. ..+...|++.++|++++||++|+|++.
T Consensus 114 ~~~~~~~~~~~~~~~D~~--~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 114 SWLKELGNPYALSLFDGD--GMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred HHHHHcCCCCceEEEcCC--ccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 999998876654 33433 357789999999999999999999875
No 24
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.75 E-value=1.2e-17 Score=154.70 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=95.1
Q ss_pred cCCcccee-cCC--CCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKN--GGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~--g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+ |+.++++.+ +||+++|+||++||++|++++|.|.++++ + +++|++|+.|.+++..++|+
T Consensus 43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~--~~~vi~v~~~~~~~~~~~~~ 116 (185)
T PRK15412 43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q--GIRVVGMNYKDDRQKAISWL 116 (185)
T ss_pred CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c--CCEEEEEECCCCHHHHHHHH
Confidence 34588887 666 467776665 79999999999999999999999987753 2 58999999988888889999
Q ss_pred hcCCCcccc-cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 412 KGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 412 ~~~~~~~~~-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++++ +.+| +..|....+.+.|++.++|++|+||++|+|++++.+
T Consensus 117 ~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G 161 (185)
T PRK15412 117 KELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAG 161 (185)
T ss_pred HHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEec
Confidence 9887 4555 356777888999999999999999999999998654
No 25
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.75 E-value=7.9e-18 Score=157.07 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=93.9
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSF 407 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~ 407 (569)
...|+|.+ +.+|+.+++++++||+|||+|||+||++|++++|.|++++++++++ ++.||+|+++ .+.+.+
T Consensus 17 ~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEFPNTKDI 94 (199)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCCCCHHHH
Confidence 45689988 9999999999999999999999999999999999999999999876 7999999974 356789
Q ss_pred HHHHhcCCCcccccCch------hhHH--------HHHhcCCC----Cc---cEEEEECCCCcEEEccc
Q 008336 408 DEFFKGMPWLALPFGDA------RKAS--------LSRKFKVS----GI---PMLVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~~~~~~~~~~~~d------~~~~--------l~~~~~v~----~~---Pt~~lid~~G~i~~~~~ 455 (569)
++|+++++ +.||++.+ .... +...|++. ++ |++||||++|+|+.+..
T Consensus 95 ~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 95 RKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS 162 (199)
T ss_pred HHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence 99998877 67776532 1111 22334432 23 37999999999998854
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.75 E-value=2e-17 Score=151.71 Aligned_cols=143 Identities=17% Similarity=0.315 Sum_probs=119.1
Q ss_pred Ccccee-cCCCCceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 408 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~ 408 (569)
.|+|.+ +.+|+.++++++ +||++||+||++||+.|..+++.|.+++++++++ ++.|++|++|. +++.++
T Consensus 4 ~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~ 81 (171)
T cd02969 4 APDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMK 81 (171)
T ss_pred CCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHH
Confidence 478877 889999999998 8999999999999999999999999999999864 69999999985 578899
Q ss_pred HHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCC-CCHHHHHHHHHHhhhhhcC
Q 008336 409 EFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYP-FTEERMKEIDGQYNEMAKG 487 (569)
Q Consensus 409 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p-~~~~~~~~l~~~l~~l~~~ 487 (569)
++++.++ +.+|++.|....+++.|++..+|+++|||++|+|+++.... ..... .......+|.++|+.++.+
T Consensus 82 ~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 82 AKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRID------DSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeeccc------CCcccccccccHHHHHHHHHHHHcC
Confidence 9999887 45888889889999999999999999999999999874321 11011 1334557788888888877
Q ss_pred CC
Q 008336 488 WP 489 (569)
Q Consensus 488 ~~ 489 (569)
.+
T Consensus 155 ~~ 156 (171)
T cd02969 155 KP 156 (171)
T ss_pred CC
Confidence 65
No 27
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.74 E-value=2.4e-17 Score=151.74 Aligned_cols=117 Identities=24% Similarity=0.526 Sum_probs=106.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
...|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.|.+++++++++ ++.+++|++|.+.+.+.++++++
T Consensus 39 ~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~ 116 (173)
T PRK03147 39 KEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRY 116 (173)
T ss_pred CCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHh
Confidence 34578988 8999999999999999999999999999999999999999999865 69999999999989999999888
Q ss_pred CCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+ +.+|+..|....+.+.|++.++|++++||++|+++....
T Consensus 117 ~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~ 156 (173)
T PRK03147 117 G-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVIT 156 (173)
T ss_pred C-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEe
Confidence 7 678888888889999999999999999999999998743
No 28
>PLN02412 probable glutathione peroxidase
Probab=99.74 E-value=6.9e-18 Score=153.46 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=93.2
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~ 408 (569)
..|+|.+ +.+|+.+++++++||++||+||++||++|++++|.|++++++|+++ ++.|++|++|. +.+...
T Consensus 8 ~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCCCCHHHHH
Confidence 4589988 8999999999999999999999999999999999999999999976 79999999862 334555
Q ss_pred HH-HhcCCCcccccCch--hh-HHHHHhcC-------------CCCccEEEEECCCCcEEEccc
Q 008336 409 EF-FKGMPWLALPFGDA--RK-ASLSRKFK-------------VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 409 ~~-~~~~~~~~~~~~~d--~~-~~l~~~~~-------------v~~~Pt~~lid~~G~i~~~~~ 455 (569)
++ .++++ +.||++.+ .. ...++.|+ +.+.|++||||++|+|+.+..
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~ 148 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA 148 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC
Confidence 55 46655 77887642 22 13333332 667899999999999999854
No 29
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.74 E-value=2.2e-17 Score=154.10 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=94.7
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDE 84 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~ 84 (569)
-.|..+|+| +.+.+|+.+++++++|| +||+|||+||++|++++|.|++++++++++| ++|++|+++ ++.+
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecchhccCCCCCCHH
Confidence 457899999 55789999999999999 9999999999999999999999999999886 999999974 4678
Q ss_pred HHHHHHHhCCCcccccCC----chhHHH--------HHHhcCCC----Cc---cEEEEECCCCcEEEcC
Q 008336 85 AFKGYFSKMPWLAVPFSD----SETRDK--------LDELFKVM----GI---PHLVILDENGKVLSDG 134 (569)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~----~~~~~~--------l~~~~~v~----~~---P~~~lid~~G~i~~~~ 134 (569)
.+++|+++++..+..+.+ ...... +...|++. ++ |++||||++|+|+.+.
T Consensus 93 ~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 93 DIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 899999998876655432 111111 22234332 22 4799999999999753
No 30
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.74 E-value=1.2e-17 Score=145.27 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=95.2
Q ss_pred CccCCce-ecCCC--ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHh
Q 008336 17 SSARDFL-IRSNG--DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (569)
Q Consensus 17 ~~~pdf~-~~~~g--~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~ 92 (569)
.++|+|. .+.+| +.+++++++|| ++|+||++||++|+.++|.|.++.+++ ++.|++|+.+++.+.+++|+++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHh
Confidence 3689995 45777 88999999999 999999999999999999999998774 3899999999999999999999
Q ss_pred CCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 93 MPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 93 ~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
++..+.++ .|. ...+++.|++.++|+++++|++|+++..
T Consensus 77 ~~~~~~~~~~D~--~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 77 HGNPYAAVGFDP--DGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred cCCCCceEEECC--cchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 88765543 333 2468899999999999999999999864
No 31
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.74 E-value=2.2e-17 Score=135.80 Aligned_cols=92 Identities=46% Similarity=0.927 Sum_probs=78.8
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC--CCcccccCCchhHHHHHHhcC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM--PWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 114 (569)
|| ++|+|||+||++|++++|.|.++++++++..++++|+|+.|.+.+.++++++++ +|..+++.+.. ...+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHCC
Confidence 78 999999999999999999999999999954479999999999999999999999 45555555444 468999999
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 32
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.73 E-value=1.7e-17 Score=156.89 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=94.7
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~ 83 (569)
...|.++|+| +.+.+|+.+++++++|| +||+|||+||++|+.++|.|++++++++++| +.|++|+++ ++.
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecccccccCCCCH
Confidence 3578999999 55789999999999999 9999999999999999999999999999886 999999975 356
Q ss_pred HHHHHHH-HhCCCcccccCCchhH-HHHHHhc-------C------CCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYF-SKMPWLAVPFSDSETR-DKLDELF-------K------VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~-------~------v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++|+ ++++..+..+.+.+.. ..+...| + +.+.|++||||++|+|+.+
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 7888987 5666655544322211 1122222 2 4567999999999999975
No 33
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.73 E-value=7e-18 Score=151.39 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=93.4
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 410 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~~ 410 (569)
|+|.+ +.+|+.+++++++||+|||+|||+||+ |++++|.|++++++++++ ++.|++|++|. +.+.+++|
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccCccccCCCCCHHHHHHH
Confidence 67877 899999999999999999999999999 999999999999999865 69999999753 35678999
Q ss_pred Hhc-CCCcccccCchh--hHH-HHHhcC--CCCcc-----------EEEEECCCCcEEEccch
Q 008336 411 FKG-MPWLALPFGDAR--KAS-LSRKFK--VSGIP-----------MLVAIGPSGRTITKEAR 456 (569)
Q Consensus 411 ~~~-~~~~~~~~~~d~--~~~-l~~~~~--v~~~P-----------t~~lid~~G~i~~~~~~ 456 (569)
+++ ++ +.||++.|. ... ..+.|+ +.++| ++||||++|+|+.+..+
T Consensus 80 ~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G 141 (152)
T cd00340 80 CETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAP 141 (152)
T ss_pred HHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECC
Confidence 986 55 678887542 222 344455 45666 89999999999998654
No 34
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.73 E-value=1.8e-17 Score=143.57 Aligned_cols=113 Identities=32% Similarity=0.653 Sum_probs=103.6
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
..|+|.+ +.+|+.+++++++||+++|.||++ ||++|+..++.|++++++++++ ++.+++|+.|.. +..+++.+.+
T Consensus 4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~-~~~~~~~~~~ 80 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDP-EEIKQFLEEY 80 (124)
T ss_dssp BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSH-HHHHHHHHHH
T ss_pred CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccc-cchhhhhhhh
Confidence 4589988 899999999999999999999998 9999999999999999999976 799999999744 6788888887
Q ss_pred CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 415 PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~ 453 (569)
+ +.+|+..|....+++.|++. .+|++||||++|+|+++
T Consensus 81 ~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 81 G-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp T-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred c-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 7 88999999999999999999 99999999999999974
No 35
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.73 E-value=8.8e-18 Score=150.75 Aligned_cols=113 Identities=22% Similarity=0.344 Sum_probs=89.5
Q ss_pred cCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHH
Q 008336 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGY 89 (569)
Q Consensus 19 ~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~~~ 89 (569)
+|+| +.+.+|+.+++++++|| |+|+|||+||+ |+.++|.|+++++++++.+ +.|++|+++ ++.+.+++|
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG-LVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC-EEEEEeccCccccCCCCCHHHHHHH
Confidence 6899 56789999999999999 99999999999 9999999999999998775 999999875 346789999
Q ss_pred HHh-CCCcccccCCchhHH-HHHHhcC--CCCcc-----------EEEEECCCCcEEEc
Q 008336 90 FSK-MPWLAVPFSDSETRD-KLDELFK--VMGIP-----------HLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~-~l~~~~~--v~~~P-----------~~~lid~~G~i~~~ 133 (569)
+++ ++..++.+.+.+... .....|+ +.++| +++|||++|+|+.+
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 987 676655554321111 1233444 34555 89999999999985
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.73 E-value=2e-17 Score=143.54 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=92.1
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHHHHHHHhCCCccccc
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKGYFSKMPWLAVPF 100 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~~ 100 (569)
.|+++++++++|| ++|+||++||++|++++|.|+++++++++.+ +.+++|+.+ .+.+.+++|++++++.+..+
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG-LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC-eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 3578999999999 9999999999999999999999999999764 999999863 46788999999998876666
Q ss_pred CCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
.|.. ..+.+.|++.++|++++||++|+|++..
T Consensus 91 ~D~~--~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 91 NDND--YATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred ECCc--hHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 5544 4688999999999999999999998753
No 37
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.72 E-value=1.1e-16 Score=147.40 Aligned_cols=117 Identities=28% Similarity=0.543 Sum_probs=104.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
.+|..+|+| +.+.+|+.+++++++|| ++|+||++||++|+...+.|.++++++.+.+ +.+++|++|.+.+.++.|++
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~-~~vi~i~~d~~~~~~~~~~~ 114 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG-VEIIAVNVDETELAVKNFVN 114 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC-eEEEEEEcCCCHHHHHHHHH
Confidence 468999999 45689999999999999 9999999999999999999999999998764 99999999999999999999
Q ss_pred hCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++..+..+.+.. ..+.+.|++.++|+++++|++|+++..
T Consensus 115 ~~~~~~~~~~d~~--~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 115 RYGLTFPVAIDKG--RQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HhCCCceEEECCc--chHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 9987666555443 478899999999999999999999863
No 38
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.72 E-value=4.9e-17 Score=149.10 Aligned_cols=114 Identities=23% Similarity=0.322 Sum_probs=94.7
Q ss_pred cCCcccee-cCCCC--ceecccC-CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 336 SGDLDFVV-GKNGG--KVPVSDL-AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 336 ~~~~~f~~-~~~g~--~v~l~~~-~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
...|+|.+ +.+|+ .++++++ +||+++|+||++||++|++++|.+++++++ ++.|++|+.+...+...+|+
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~ 111 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFL 111 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHH
Confidence 44689987 78886 5555665 689999999999999999999999876542 48999999987777788899
Q ss_pred hcCCCcccc-cCchhhHHHHHhcCCCCccEEEEECCCCcEEEccch
Q 008336 412 KGMPWLALP-FGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 412 ~~~~~~~~~-~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~~ 456 (569)
++++ +.+| +..|....+.+.|++.++|++++||++|++++++.+
T Consensus 112 ~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G 156 (173)
T TIGR00385 112 KELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAG 156 (173)
T ss_pred HHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEec
Confidence 8887 4565 456778889999999999999999999999998543
No 39
>PLN02412 probable glutathione peroxidase
Probab=99.71 E-value=3e-17 Score=149.27 Aligned_cols=115 Identities=22% Similarity=0.310 Sum_probs=89.3
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHH
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~ 87 (569)
..+|+| +.+.+|+.+++++++|| +||+|||+||++|++++|.|++++++|+++| +.|++|+++ ++.+...
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEecccccccCCCCCHHHHH
Confidence 678999 45789999999999999 9999999999999999999999999999886 999999985 2444554
Q ss_pred HH-HHhCCCcccccCC--chhHHHHHHhc-----------C--CCCccEEEEECCCCcEEEc
Q 008336 88 GY-FSKMPWLAVPFSD--SETRDKLDELF-----------K--VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~-~~~~~~~~~~~~~--~~~~~~l~~~~-----------~--v~~~P~~~lid~~G~i~~~ 133 (569)
++ .++++..+..+.+ ... ......| + +.+.|++||||++|+|+..
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred HHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE
Confidence 54 5776765554432 111 1122222 2 6678999999999999975
No 40
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.71 E-value=8.5e-17 Score=146.39 Aligned_cols=116 Identities=25% Similarity=0.277 Sum_probs=98.3
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|+++|+| +.+.+|+.+++++++|| ++|+||++| |++|.+++|.|+++++++. +++|++|+.|. ....++|+
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~-~~~~~~f~ 94 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL-PFAQKRFC 94 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC-HHHHHHHH
Confidence 469999999 55689999999999999 999999999 9999999999999999983 49999999984 56789999
Q ss_pred HhCCCcccc-cCCchhHHHHHHhcCCCCcc---------EEEEECCCCcEEEcC
Q 008336 91 SKMPWLAVP-FSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (569)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~ 134 (569)
++++...++ +.|.. ...+++.||+...| +++|||++|+|++..
T Consensus 95 ~~~~~~~~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 95 GAEGLENVITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HhCCCCCceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 998876444 44422 23688999998877 999999999998753
No 41
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.70 E-value=1.4e-16 Score=147.92 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=94.1
Q ss_pred cccCccCCc-eecCCCceeecC--CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|+++|+| +.+.+|+.++++ +++|| ++|+||++|||+|++++|.+.+++++. ++.+++|+. ++.+..++|
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is~-~~~~~~~~~ 121 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMISD-GTPAEHRRF 121 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEeC-CCHHHHHHH
Confidence 579999999 456899999995 57999 999999999999999999999988653 266888884 467889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+++++.....+.. ...+.+.|++.++|+.++||++|+|+..
T Consensus 122 ~~~~~~~~~~~~~---~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 122 LKDHELGGERYVV---SAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHhcCCCcceeec---hhHHHHhccCCccceEEEECCCCeEEEc
Confidence 9999876544432 2468899999999999999999999874
No 42
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.70 E-value=8.4e-17 Score=146.42 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=100.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||+++|+||++| |++|.+++|.|+++++++. ++.|++||.|. +...++|.++
T Consensus 22 ~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~-~~~~~~f~~~ 96 (167)
T PRK00522 22 DKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADL-PFAQKRFCGA 96 (167)
T ss_pred CCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCC-HHHHHHHHHh
Confidence 34589987 8999999999999999999999999 9999999999999998883 58999999985 4667889998
Q ss_pred CCCcccccCch-hhHHHHHhcCCCCcc---------EEEEECCCCcEEEccc
Q 008336 414 MPWLALPFGDA-RKASLSRKFKVSGIP---------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~~~~~~~~~d-~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~ 455 (569)
++...++++.| ..+.+++.||+...| +++|||++|+|++.+.
T Consensus 97 ~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 97 EGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred CCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 87445788888 456999999998877 9999999999999864
No 43
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.70 E-value=2e-16 Score=146.87 Aligned_cols=111 Identities=24% Similarity=0.354 Sum_probs=91.6
Q ss_pred cCCcccee-cCCCCceecc--cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh
Q 008336 336 SGDLDFVV-GKNGGKVPVS--DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK 412 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~--~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 412 (569)
...|+|.+ +.+|+.++++ +++||+++|+||++||++|++++|.+.+++++. ++.+++|+.| +.+..++|++
T Consensus 50 ~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-----~~~vv~Is~~-~~~~~~~~~~ 123 (189)
T TIGR02661 50 DAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-----ETDVVMISDG-TPAEHRRFLK 123 (189)
T ss_pred CcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc-----CCcEEEEeCC-CHHHHHHHHH
Confidence 34689988 8999999994 578999999999999999999999999987653 3678899854 6678899999
Q ss_pred cCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 413 GMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 413 ~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+++ +.++... ...++.+.|++.++|+.++||++|+|++++
T Consensus 124 ~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 124 DHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred hcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 887 3333222 346789999999999999999999999873
No 44
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.70 E-value=5.7e-17 Score=145.71 Aligned_cols=113 Identities=16% Similarity=0.235 Sum_probs=90.3
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHHHHH
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDEFF 411 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~ 411 (569)
+|.+ +.+|+++++++++||++||+||++||++|++++|.|++++++++++ ++.|++|+++ .+.+..++|+
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEeccccccCCCCCHHHHHHHH
Confidence 5766 8999999999999999999999999999999999999999999876 6999999952 3457788999
Q ss_pred hc-CCCcccccCch-----hhHHHHHhcC---CCCccE----EEEECCCCcEEEccc
Q 008336 412 KG-MPWLALPFGDA-----RKASLSRKFK---VSGIPM----LVAIGPSGRTITKEA 455 (569)
Q Consensus 412 ~~-~~~~~~~~~~d-----~~~~l~~~~~---v~~~Pt----~~lid~~G~i~~~~~ 455 (569)
++ ++ +.||++.+ ........|. ..++|+ +||||++|+|+.+..
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~ 137 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWR 137 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEEC
Confidence 75 55 67887644 1111222232 346898 999999999999854
No 45
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.70 E-value=9.4e-17 Score=142.27 Aligned_cols=114 Identities=26% Similarity=0.411 Sum_probs=103.1
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
.|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++.++ ++.||+|++|. .+.+.+|+++++
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~-~~~~~~~~~~~~ 79 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDS-VESHAKFAEKYG 79 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCC-HHHHHHHHHHhC
Confidence 478887 8999999999999999999999 589999999999999999999865 69999999984 578899999887
Q ss_pred CcccccCchhhHHHHHhcCCCCc---------cEEEEECCCCcEEEccc
Q 008336 416 WLALPFGDARKASLSRKFKVSGI---------PMLVAIGPSGRTITKEA 455 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~---------Pt~~lid~~G~i~~~~~ 455 (569)
+.+|++.|....+++.|++... |+++|||++|+|++...
T Consensus 80 -~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 80 -LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR 127 (140)
T ss_pred -CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe
Confidence 5788888988999999999988 99999999999999854
No 46
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.70 E-value=2.2e-16 Score=144.88 Aligned_cols=116 Identities=19% Similarity=0.358 Sum_probs=102.5
Q ss_pred cCccCCc-eecCCCceeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~~ 85 (569)
|..+|+| +.+.+|+.++++++ +|+ +||+||++|||.|..+++.|.++++++++. ++.+++|++|. +.+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHH
Confidence 6789999 55789999999998 889 999999999999999999999999999876 49999999975 5789
Q ss_pred HHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcC
Q 008336 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~ 134 (569)
+++|+++.+..+..+.+.. ..+.+.|++..+|+++|+|++|+|++..
T Consensus 80 ~~~~~~~~~~~~~~l~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDET--QEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHCCCCceEEECCc--hHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 9999999988766666554 3688999999999999999999999754
No 47
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.70 E-value=7.3e-17 Score=148.00 Aligned_cols=114 Identities=22% Similarity=0.379 Sum_probs=93.7
Q ss_pred ccccCccCCce-ecCCCc--eeecCCC-CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 13 SLLSSSARDFL-IRSNGD--QVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 13 ~~~g~~~pdf~-~~~~g~--~v~l~~~-~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
..+|.++|+|. .+.+|+ .++++++ +|| ++|+||++||++|++++|.+++++++ ++.+++|+.++..+..+
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHH
Confidence 46899999994 456776 5555565 789 99999999999999999999888652 38999999988888888
Q ss_pred HHHHhCCCccccc-CCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVPF-SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++++..+..+ .|.. ..+.+.|++.++|++++||++|++++.
T Consensus 109 ~~~~~~~~~f~~v~~D~~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 109 KFLKELGNPYQAILIDPN--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHHHcCCCCceEEECCC--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 9999988766533 3333 468889999999999999999999874
No 48
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.70 E-value=1.6e-16 Score=143.23 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=101.4
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++ ++.||+|+.| +.+.+++|+++
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d-~~~~~~~~~~~ 84 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTD-KPEKLSRFAEK 84 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCC-CHHHHHHHHHH
Confidence 34589988 899999999999999999999976 6788999999999999999875 6999999998 45888899998
Q ss_pred CCCcccccCchhhHHHHHhcCCCCc------------cEEEEECCCCcEEEcc
Q 008336 414 MPWLALPFGDARKASLSRKFKVSGI------------PMLVAIGPSGRTITKE 454 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~~~------------Pt~~lid~~G~i~~~~ 454 (569)
++ +.+|++.|..+.+++.|++... |+++|||++|+|+...
T Consensus 85 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 136 (154)
T PRK09437 85 EL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVF 136 (154)
T ss_pred hC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEE
Confidence 86 6788888888899999998764 7789999999999985
No 49
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.70 E-value=1e-16 Score=148.21 Aligned_cols=116 Identities=18% Similarity=0.335 Sum_probs=91.0
Q ss_pred CCcccee-cCCCCceecccCCCCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSF 407 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~ 407 (569)
..|+|.+ +.+|+.+++++++||++ |+.|||+|||+|++++|.|++++++++++ ++.|++|++|. +.+..
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecccccccCCCCHHHH
Confidence 3588988 89999999999999965 55669999999999999999999999876 69999999752 34677
Q ss_pred HHHHh-cCCCcccccCch--hhH----HHH------------HhcCCCCccE---EEEECCCCcEEEccc
Q 008336 408 DEFFK-GMPWLALPFGDA--RKA----SLS------------RKFKVSGIPM---LVAIGPSGRTITKEA 455 (569)
Q Consensus 408 ~~~~~-~~~~~~~~~~~d--~~~----~l~------------~~~~v~~~Pt---~~lid~~G~i~~~~~ 455 (569)
.+|+. +++ +.||+..| .++ .+. ..+++.++|+ +||||++|+|+.+..
T Consensus 97 ~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 97 KEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 88875 555 67787643 221 222 1246789995 699999999999864
No 50
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.69 E-value=1.3e-16 Score=141.90 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=101.1
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEecCC-ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHW-CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.+++++++||++||+||++| |++|++++|.|++++++++ ++.|++|++|. ....++|.+.
T Consensus 4 ~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~-~~~~~~~~~~ 78 (143)
T cd03014 4 DKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADL-PFAQKRWCGA 78 (143)
T ss_pred CCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCC-HHHHHHHHHh
Confidence 34689988 8999999999999999999999998 6999999999999999973 58999999986 5677889888
Q ss_pred CCCcccccCchhh-HHHHHhcCCCC------ccEEEEECCCCcEEEccc
Q 008336 414 MPWLALPFGDARK-ASLSRKFKVSG------IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~~~~~~~~~d~~-~~l~~~~~v~~------~Pt~~lid~~G~i~~~~~ 455 (569)
++...++++.|.. ..+++.|++.. .|++||||++|+|+..+.
T Consensus 79 ~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 79 EGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred cCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEE
Confidence 8766788888875 88999999864 799999999999999864
No 51
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.69 E-value=2.9e-16 Score=140.71 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=98.8
Q ss_pred ccCccCCc-eecCCCceeecCCCCC-c-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~g-k-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+|..+|+| +.+.+|+.+++++++| | ++|.|| ++||+.|+..+|.|+++++++++++ +.+++|+.| +.+.+++|+
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-v~vi~vs~d-~~~~~~~~~ 80 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG-AEVLGISVD-SPFSLRAWA 80 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC-CEEEEecCC-CHHHHHHHH
Confidence 68999999 4567999999999999 8 888887 9999999999999999999998765 999999988 466799999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCC----c--cEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMG----I--PHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~----~--P~~~lid~~G~i~~~ 133 (569)
++++..+..+.|......+.+.|++.. + |+++|||++|+|++.
T Consensus 81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 998877666666542246888999873 3 489999999999875
No 52
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.68 E-value=4.9e-16 Score=162.31 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=103.4
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-----CCHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-----~~~~~~ 86 (569)
..+.++|+| +.+++|+.+.++ +|| |||+|||+||++|+.++|.|.+++++++..+ +.||+|+++ .+.+.+
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~-v~VI~Vs~~~~~~e~~~~~~ 109 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS-ANLITVASPGFLHEKKDGDF 109 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC-eEEEEEecccccccccHHHH
Confidence 446789999 668999999998 899 9999999999999999999999999998654 999999863 345677
Q ss_pred HHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
+++++..++..+++..+. ...+.+.|+|.++|+++|||++|+|+... .| ..+.+++.++++.
T Consensus 110 ~~~~~~~~y~~~pV~~D~-~~~lak~fgV~giPTt~IIDkdGkIV~~~-------~G----~~~~eeL~a~Ie~ 171 (521)
T PRK14018 110 QKWYAGLDYPKLPVLTDN-GGTLAQSLNISVYPSWAIIGKDGDVQRIV-------KG----SISEAQALALIRN 171 (521)
T ss_pred HHHHHhCCCcccceeccc-cHHHHHHcCCCCcCeEEEEcCCCeEEEEE-------eC----CCCHHHHHHHHHH
Confidence 888887776544432222 24789999999999999999999998742 12 2345666666653
No 53
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.68 E-value=2.1e-16 Score=143.10 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=96.3
Q ss_pred CCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEE------EEEeCCCChhHHHHHH----hcC
Q 008336 345 KNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEV------VFISSDRDQTSFDEFF----KGM 414 (569)
Q Consensus 345 ~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~v------v~is~d~~~~~~~~~~----~~~ 414 (569)
.+.+.++.++++||+.||+|||+||++|+.++|.|.++.+ + ++.+ ++|+.|+.......|+ ++.
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c--CCCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999988832 2 4677 9999997655544444 333
Q ss_pred CCccc---ccCchhhHHHHHhcCCCCccEE-EEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 415 PWLAL---PFGDARKASLSRKFKVSGIPML-VAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 415 ~~~~~---~~~~d~~~~l~~~~~v~~~Pt~-~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
. ..+ ++..|..+.+...|++.++|++ ||||++|+|+.++.| +.+.+.++++...+++++
T Consensus 121 ~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G-----------~l~~ee~e~~~~li~~ll 183 (184)
T TIGR01626 121 K-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEG-----------ALSDSDIQTVISLVNGLL 183 (184)
T ss_pred c-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeC-----------CCCHHHHHHHHHHHHHHh
Confidence 3 333 4777878889999999999988 899999999999654 256677777777777665
No 54
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.68 E-value=2.1e-16 Score=145.09 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=106.4
Q ss_pred CCcccee-cCCC----CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 337 GDLDFVV-GKNG----GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 337 ~~~~f~~-~~~g----~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
..|+|.+ +.+| +.+++++++||++||+|| ++||++|..+++.|+++++++.++ ++.|++|++|.. ...+.+
T Consensus 4 ~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~-~~~~~~ 80 (173)
T cd03015 4 KAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSH-FSHLAW 80 (173)
T ss_pred cCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCH-HHHHHH
Confidence 4588887 6666 789999999999999999 899999999999999999999875 799999999854 333445
Q ss_pred HhcC------CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHH
Q 008336 411 FKGM------PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEID 478 (569)
Q Consensus 411 ~~~~------~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~ 478 (569)
.+.. .-+.|+++.|....+++.|++. .+|+++|||++|+|++++... .|. .+..+++.
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~---------~~~-~~~~~~il 150 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVND---------LPV-GRSVDETL 150 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecC---------CCC-CCCHHHHH
Confidence 4432 2367889999999999999987 678999999999999986321 122 22446666
Q ss_pred HHhhhh
Q 008336 479 GQYNEM 484 (569)
Q Consensus 479 ~~l~~l 484 (569)
+.|+.+
T Consensus 151 ~~l~~~ 156 (173)
T cd03015 151 RVLDAL 156 (173)
T ss_pred HHHHHh
Confidence 666655
No 55
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.68 E-value=3.2e-16 Score=133.31 Aligned_cols=110 Identities=34% Similarity=0.624 Sum_probs=100.1
Q ss_pred cee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC-hhHHHHHHhcCCCcc
Q 008336 341 FVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD-QTSFDEFFKGMPWLA 418 (569)
Q Consensus 341 f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~-~~~~~~~~~~~~~~~ 418 (569)
|.+ +.+|+.+++++++||+++|+||++||++|++.++.|.++.++++.. ++.+++|++|.. .+.+++++++++ ..
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~-~~ 78 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD--GVEVVGVNVDDDDPAAVKAFLKKYG-IT 78 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC--CeEEEEEECCCCCHHHHHHHHHHcC-CC
Confidence 445 7889999999999999999999999999999999999999998733 699999999986 899999999988 67
Q ss_pred cccCchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 419 LPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 419 ~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++..+....+.+.|++.++|+++|+|++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 88888878889999999999999999999999987
No 56
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.68 E-value=2.8e-16 Score=139.72 Aligned_cols=114 Identities=25% Similarity=0.272 Sum_probs=95.2
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCC-CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~w-C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|.++|+| +.+.+|+.+++++++|| ++|+||++| |++|+.++|.|.++++++. ++.|++|+.|. .+..++|.+
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~-~~~~~~~~~ 77 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL-PFAQKRWCG 77 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC-HHHHHHHHH
Confidence 68999999 55689999999999999 999999999 6999999999999999973 48999999985 667788888
Q ss_pred hCCCcccc-cCCchhHHHHHHhcCCCC------ccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVP-FSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~-~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~i~~~ 133 (569)
+.+...++ +.+.. ...+.+.|++.. .|+++|||++|+|+..
T Consensus 78 ~~~~~~~~~l~D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 78 AEGVDNVTTLSDFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred hcCCCCceEeecCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 88763333 34432 246888999863 6999999999999875
No 57
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.67 E-value=2.5e-16 Score=146.04 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=97.7
Q ss_pred cCCcccee-c-CCCC--ceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHH
Q 008336 336 SGDLDFVV-G-KNGG--KVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEF 410 (569)
Q Consensus 336 ~~~~~f~~-~-~~g~--~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~ 410 (569)
...|+|.+ + .+|+ .+++++++||++||+|| ++||++|..+++.|++++++++++ +++|++||+|.. ...++|
T Consensus 6 ~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~-~~~~~~ 82 (187)
T TIGR03137 6 TEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTH-FVHKAW 82 (187)
T ss_pred CcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHHH
Confidence 45699987 5 5676 68888999999999999 999999999999999999999865 799999999964 444555
Q ss_pred HhcC---CCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccc
Q 008336 411 FKGM---PWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 411 ~~~~---~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~ 455 (569)
.+.. .-+.||++.|....+++.|+|. ..|++||||++|+|++...
T Consensus 83 ~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~ 136 (187)
T TIGR03137 83 HDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEI 136 (187)
T ss_pred HhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEE
Confidence 4432 2367889999999999999986 4699999999999999853
No 58
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.67 E-value=5.6e-16 Score=138.85 Aligned_cols=116 Identities=23% Similarity=0.321 Sum_probs=100.6
Q ss_pred CCcccee-cCCCCceecccCCC-CEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAG-KTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
..|+|.+ +.+|+.+++++++| |+++|.|| ++||++|.+.+|.|++++++++++ ++.+++|+.|. .+..++|+++
T Consensus 6 ~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~-~~~~~~~~~~ 82 (149)
T cd03018 6 KAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDS-PFSLRAWAEE 82 (149)
T ss_pred cCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCC-HHHHHHHHHh
Confidence 3578877 88999999999999 99999888 999999999999999999999865 69999999884 5678899988
Q ss_pred CCCcccccCchhh--HHHHHhcCCC----Cc--cEEEEECCCCcEEEccch
Q 008336 414 MPWLALPFGDARK--ASLSRKFKVS----GI--PMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 414 ~~~~~~~~~~d~~--~~l~~~~~v~----~~--Pt~~lid~~G~i~~~~~~ 456 (569)
++ +.+|++.|.. ..+++.|++. ++ |+++|||++|+|++++.+
T Consensus 83 ~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~ 132 (149)
T cd03018 83 NG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVS 132 (149)
T ss_pred cC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEec
Confidence 87 6788888876 8899999987 33 489999999999999643
No 59
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.67 E-value=1e-15 Score=140.59 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=92.8
Q ss_pred ccCccCCcee-cCCC----ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 15 LSSSARDFLI-RSNG----DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 15 ~g~~~pdf~~-~~~g----~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
+|+++|+|.+ +.+| +.+++++++|| +||+|| ++||++|..++|.|++++++|.+.+ +.|++|++|.. +...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~-v~vv~Is~d~~-~~~~ 78 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN-AEVLGVSTDSH-FSHL 78 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEecCCH-HHHH
Confidence 5899999954 5565 78999999999 999999 8999999999999999999998775 99999999853 3344
Q ss_pred HHHHh-------CCCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEcC
Q 008336 88 GYFSK-------MPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSDG 134 (569)
Q Consensus 88 ~~~~~-------~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~~ 134 (569)
++.+. .++.+..+.|.. ..+.+.|++. .+|+++|||++|+|++..
T Consensus 79 ~~~~~~~~~~~~~~~~f~~l~D~~--~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 79 AWRNTPRKEGGLGKINFPLLADPK--KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHhhhhhCCccCcceeEEECCc--hhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 55443 234444445544 4688999986 678999999999998853
No 60
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.67 E-value=5e-16 Score=142.76 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=108.5
Q ss_pred ccCCcccee----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 335 VSGDLDFVV----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 335 ~~~~~~f~~----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
....|+|.. +.+..+++|++++||++||+|| +.||+.|..+++.|.++++++.++ +++|++||.|.. ...++
T Consensus 5 ~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~-~~~~a 81 (187)
T PRK10382 5 NTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTH-FTHKA 81 (187)
T ss_pred CCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCH-HHHHH
Confidence 445688854 4556678889999999999999 999999999999999999999876 699999999854 56666
Q ss_pred HHhcC---CCcccccCchhhHHHHHhcCC----CCc--cEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 410 FFKGM---PWLALPFGDARKASLSRKFKV----SGI--PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 410 ~~~~~---~~~~~~~~~d~~~~l~~~~~v----~~~--Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
|.+.. .-+.||++.|.+..+++.|++ .++ |++||||++|+|++...... ..+++.+++.+.
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~----------~~~~~~~eil~~ 151 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE----------GIGRDASDLLRK 151 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC----------CCCCCHHHHHHH
Confidence 66543 347889999999999999998 356 99999999999999854221 123456667666
Q ss_pred hhhh
Q 008336 481 YNEM 484 (569)
Q Consensus 481 l~~l 484 (569)
|+.+
T Consensus 152 l~al 155 (187)
T PRK10382 152 IKAA 155 (187)
T ss_pred HHhh
Confidence 6554
No 61
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.67 E-value=3.3e-16 Score=144.81 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=90.2
Q ss_pred cCccCCc-eecCCCceeecCCCCCc-EE-EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-------CHHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDSLKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~~~gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-------~~~~ 85 (569)
+..+|+| +.+.+|+.+++++++|| ++ +.|||+|||+|+.++|.|++++++|++++ +.|++|+++. +.+.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g-v~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG-LEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC-cEEEEEecccccccCCCCHHH
Confidence 5788999 55789999999999999 54 56699999999999999999999998875 9999999752 4577
Q ss_pred HHHHHH-hCCCcccccCC--chh--HHHHH------------HhcCCCCccE---EEEECCCCcEEEc
Q 008336 86 FKGYFS-KMPWLAVPFSD--SET--RDKLD------------ELFKVMGIPH---LVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~--~~~--~~~l~------------~~~~v~~~P~---~~lid~~G~i~~~ 133 (569)
+.+|+. ++++.++.+.+ ... ...+. ..+++.++|+ +||||++|+|+.+
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 888876 66766555532 111 11222 1246778995 6999999999975
No 62
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.6e-16 Score=133.71 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=105.1
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|.+ +.+|+.++|++++||+|||+|| ..++|.|..++-.+++.+.+|... +.+|++||.|.. ...++|.++
T Consensus 8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~--~a~V~GIS~Ds~-~~~~~F~~k 84 (157)
T COG1225 8 DKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL--GAVVLGISPDSP-KSHKKFAEK 84 (157)
T ss_pred CcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC--CCEEEEEeCCCH-HHHHHHHHH
Confidence 45799998 9999999999999999999999 789999999999999999999876 799999999954 788999999
Q ss_pred CCCcccccCchhhHHHHHhcCCC------------CccEEEEECCCCcEEEcc
Q 008336 414 MPWLALPFGDARKASLSRKFKVS------------GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 414 ~~~~~~~~~~d~~~~l~~~~~v~------------~~Pt~~lid~~G~i~~~~ 454 (569)
++ ++||+++|...++++.|||. ..+++||||++|+|++..
T Consensus 85 ~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 85 HG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred hC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 98 77999999999999999984 358999999999999984
No 63
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.66 E-value=1e-15 Score=141.89 Aligned_cols=116 Identities=25% Similarity=0.342 Sum_probs=92.9
Q ss_pred cccCccCCce-ec-CCCc--eeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFL-IR-SNGD--QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~-~~-~~g~--~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
++|+++|+|. .+ .+|+ .+++++++|| ++|+|| ++||++|..++|.|++++++|.+.+ ++|++|++|. ....+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g-v~vi~VS~D~-~~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG-VEVYSVSTDT-HFVHK 80 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC-CcEEEEeCCC-HHHHH
Confidence 6899999995 44 4676 6888899999 999999 9999999999999999999998775 9999999995 34455
Q ss_pred HHHHhC----CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKM----PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~----~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|.+.. ++.+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 81 ~~~~~~~~~~~l~fpllsD~~--~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~ 134 (187)
T TIGR03137 81 AWHDTSEAIGKITYPMLGDPT--GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAV 134 (187)
T ss_pred HHHhhhhhccCcceeEEECCc--cHHHHHhCCcccCCCceeeEEEEECCCCEEEEE
Confidence 554432 23333445543 5789999986 46999999999999874
No 64
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.66 E-value=6.4e-16 Score=139.20 Aligned_cols=116 Identities=25% Similarity=0.350 Sum_probs=99.2
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|.++|+| +.+.+|+.+++++++|| +||+||++ ||+.|+.+++.|.++++++++++ +++++|+.| +.+.+++|+
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~-v~vi~Is~d-~~~~~~~~~ 82 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG-VVVLGISTD-KPEKLSRFA 82 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHHHHH
Confidence 469999999 55789999999999999 99999986 68889999999999999998875 999999998 568889999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCCCc------------cEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVMGI------------PHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~i~~~ 133 (569)
++++..+..+.|.. ..+.+.|++... |+++|||++|+|+..
T Consensus 83 ~~~~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 83 EKELLNFTLLSDED--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHhCCCCeEEECCC--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 99987666565544 468889998654 778999999999874
No 65
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.66 E-value=5.3e-16 Score=134.12 Aligned_cols=107 Identities=25% Similarity=0.485 Sum_probs=94.6
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-ChhHHHHHHhcCCC
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGMPW 416 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~ 416 (569)
|+|.+ +.+|+.+++.+++||+++|+||++||++|+.++|.|++++++ +.+++|+.|. +++.+++++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 57777 899999999999999999999999999999999999988766 4678888775 4788999999988
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+.+|+..|.+..+++.|++.++|+++|||++| ++++.
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~ 109 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVT 109 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEE
Confidence 68888888888999999999999999999999 87764
No 66
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.65 E-value=7.1e-16 Score=136.61 Aligned_cols=113 Identities=29% Similarity=0.419 Sum_probs=98.8
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
.++|+| +.+.+|+.+++++++|| ++|+|| ++||+.|..+++.|.++++++.+++ ++|++|+.| +.+.+++|++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d-~~~~~~~~~~~~ 78 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG-AVVIGVSPD-SVESHAKFAEKY 78 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCC-CHHHHHHHHHHh
Confidence 368999 56789999999999999 999999 5899999999999999999998765 999999998 567889999998
Q ss_pred CCcccccCCchhHHHHHHhcCCCCc---------cEEEEECCCCcEEEc
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGI---------PHLVILDENGKVLSD 133 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~i~~~ 133 (569)
+..+..+.|.+ ..+.+.|++... |+++++|++|+|++.
T Consensus 79 ~~~~~~l~D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 79 GLPFPLLSDPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CCCceEEECCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 87766666554 368899999988 999999999999874
No 67
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.65 E-value=1e-15 Score=135.60 Aligned_cols=117 Identities=23% Similarity=0.358 Sum_probs=103.3
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCC
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMP 415 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 415 (569)
.|+|.+ +.+|+++++++++||+++|+|| ++||++|..+++.|++++++++.. ++.|++|+.| ++...++|.++++
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCC-CHHHHHHHHhccc
Confidence 378887 8999999999999999999999 789999999999999999999654 6999999987 4577889999884
Q ss_pred CcccccCchhhHHHHHhcCCCCcc---------EEEEECCCCcEEEccchh
Q 008336 416 WLALPFGDARKASLSRKFKVSGIP---------MLVAIGPSGRTITKEARD 457 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~P---------t~~lid~~G~i~~~~~~~ 457 (569)
-..++++.|....+.+.|++...| +++|||++|+|++++.+.
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecC
Confidence 478888889888999999988766 899999999999996543
No 68
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5e-15 Score=129.25 Aligned_cols=116 Identities=24% Similarity=0.360 Sum_probs=104.1
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|++|||| +.+.+|+.++|++++|| |+|+|| ..++|.|..++-.|+..+.+|...+ .+|++||.| +....++|.
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~-a~V~GIS~D-s~~~~~~F~ 82 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG-AVVLGISPD-SPKSHKKFA 82 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC-CEEEEEeCC-CHHHHHHHH
Confidence 479999999 66789999999999999 999998 7899999999999999999999885 999999999 678899999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC------------CccEEEEECCCCcEEEc
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~i~~~ 133 (569)
++++..+..++|.+. .+++.||+. ..+++||||++|+|+..
T Consensus 83 ~k~~L~f~LLSD~~~--~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 83 EKHGLTFPLLSDEDG--EVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHhCCCceeeECCcH--HHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 999999888887775 699999973 35889999999999874
No 69
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.64 E-value=8.2e-16 Score=138.18 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=86.9
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHHHH
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYFS 91 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~~~~~ 91 (569)
+| +.+.+|+.+++++++|| +||+|||+|||+|++++|.|.+++++|++++ +.|++|+++ ++.+.+++|++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~-~~v~~i~~~~~~~~~~d~~~~~~~f~~ 82 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH-FNVLAFPCNQFGESEPDSSKEIESFAR 82 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC-eEEEEEeccccccCCCCCHHHHHHHHH
Confidence 56 45689999999999999 9999999999999999999999999999875 999999962 45678899997
Q ss_pred h-CCCcccccCCc---hhHHHHHHhcC---CCCccE----EEEECCCCcEEEc
Q 008336 92 K-MPWLAVPFSDS---ETRDKLDELFK---VMGIPH----LVILDENGKVLSD 133 (569)
Q Consensus 92 ~-~~~~~~~~~~~---~~~~~l~~~~~---v~~~P~----~~lid~~G~i~~~ 133 (569)
+ ++..++.+.+. +........|. ..++|+ +||||++|+|+..
T Consensus 83 ~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 83 RNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred HhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 6 67666555431 11011111222 346898 9999999999975
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.63 E-value=7.6e-15 Score=139.49 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=111.0
Q ss_pred CcEEEEEEec---CCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhc
Q 008336 197 GKTIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (569)
Q Consensus 197 gk~v~l~f~~---~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f 273 (569)
+..+.+ |++ +||++|+.+.|.+.+++..+. .+++.++.+|.++ ...+++.|
T Consensus 20 ~~~i~~-f~~~~a~wC~~C~~~~p~l~~la~~~~----~~~i~~v~vd~~~---------------------~~~l~~~~ 73 (215)
T TIGR02187 20 PVEIVV-FTDNDKEGCQYCKETEQLLEELSEVSP----KLKLEIYDFDTPE---------------------DKEEAEKY 73 (215)
T ss_pred CeEEEE-EcCCCCCCCCchHHHHHHHHHHHhhCC----CceEEEEecCCcc---------------------cHHHHHHc
Confidence 344444 555 999999999999999888762 2457778877654 56889999
Q ss_pred ccCCCceEEEECCCCCchh-hhhHHHHHhhCCCCCCCChHHHHHHHHHHHH-HHhhhhhhhhhccCCccceecCCCCcee
Q 008336 274 ELSTLPTLVIIGPDGKTLH-SNVAEAIEEHGVGAFPFTPEKFAELAEIQRA-KEESQTLESVLVSGDLDFVVGKNGGKVP 351 (569)
Q Consensus 274 ~v~~~Ptlvi~~~~g~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~g~~v~ 351 (569)
+|.++||+++++.+ +... .. .| ..+.+.+..+...... ....+. ++.. ..-.
T Consensus 74 ~V~~~Pt~~~f~~g-~~~~~~~-------~G----~~~~~~l~~~i~~~~~~~~~~~~-------------L~~~-~~~~ 127 (215)
T TIGR02187 74 GVERVPTTIILEEG-KDGGIRY-------TG----IPAGYEFAALIEDIVRVSQGEPG-------------LSEK-TVEL 127 (215)
T ss_pred CCCccCEEEEEeCC-eeeEEEE-------ee----cCCHHHHHHHHHHHHHhcCCCCC-------------CCHH-HHHH
Confidence 99999999999753 3321 10 01 1123444444432210 000000 0000 0011
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
+.++.+.++++.||++||++|+.+.+.++++..+. .++.+..++.+..+ ++++
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~-----------------------~~~~ 180 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENP-----------------------DLAE 180 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCH-----------------------HHHH
Confidence 12234556677799999999999999888776653 24677777766654 4889
Q ss_pred hcCCCCccEEEEECCCCc
Q 008336 432 KFKVSGIPMLVAIGPSGR 449 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~ 449 (569)
.|+|.++||+++. .+|+
T Consensus 181 ~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 181 KYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HhCCccCCEEEEe-cCCE
Confidence 9999999999987 5665
No 71
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.63 E-value=1.2e-15 Score=135.38 Aligned_cols=115 Identities=27% Similarity=0.471 Sum_probs=97.1
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcC-CCeEEEEEeCCC---ChhHHHHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFF 411 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~-~~~~vv~is~d~---~~~~~~~~~ 411 (569)
.|+|.+ +.+|+.+++.+++||++||+||++||++ |.++++.|++++++++++. .++.+++|++|. +++.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 478887 8999999999999999999999999998 9999999999999998652 359999999974 457789999
Q ss_pred hcCCCcccccCchh---hHHHHHhcCCCCc--------------cEEEEECCCCcEEEc
Q 008336 412 KGMPWLALPFGDAR---KASLSRKFKVSGI--------------PMLVAIGPSGRTITK 453 (569)
Q Consensus 412 ~~~~~~~~~~~~d~---~~~l~~~~~v~~~--------------Pt~~lid~~G~i~~~ 453 (569)
+.++ ..++++.+. ...+++.|++... |+++|||++|+|+..
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 9886 456665543 4788999997644 579999999999987
No 72
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.63 E-value=1.9e-15 Score=141.68 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=107.3
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEE-EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChh--HH-HHH
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SF-DEF 410 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~--~~-~~~ 410 (569)
...|+|.+ +..| .+++++++||+++| +||++||++|..+++.|.+++++++++ +++|++||+|.... +| +.+
T Consensus 6 ~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~ 82 (202)
T PRK13190 6 QKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDI 82 (202)
T ss_pred CCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhH
Confidence 34689988 6666 79999999997766 688999999999999999999999876 79999999996422 22 233
Q ss_pred HhcCC-CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhh
Q 008336 411 FKGMP-WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNE 483 (569)
Q Consensus 411 ~~~~~-~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~ 483 (569)
.+..+ .+.||++.|.++.+++.||+. .+|++||||++|+|++..... .-.+++++++.+.|+.
T Consensus 83 ~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~----------~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 83 EERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYP----------AETGRNIDEIIRITKA 152 (202)
T ss_pred HHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeC----------CCCCCCHHHHHHHHHH
Confidence 34444 367999999999999999985 589999999999999874321 1234567778777776
Q ss_pred hh
Q 008336 484 MA 485 (569)
Q Consensus 484 l~ 485 (569)
+.
T Consensus 153 l~ 154 (202)
T PRK13190 153 LQ 154 (202)
T ss_pred hh
Confidence 65
No 73
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.63 E-value=3.5e-15 Score=126.87 Aligned_cols=110 Identities=32% Similarity=0.567 Sum_probs=96.6
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC-HHHHHHHHHhCCCcc
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYFSKMPWLA 97 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~-~~~~~~~~~~~~~~~ 97 (569)
+| +.+.+|+.+++++++|| ++|+||++||++|+..++.+.++.+++.+. ++.+++|++|.. .+.++++++++++.+
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 35 34679999999999999 999999999999999999999999999754 599999999987 999999999998766
Q ss_pred cccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
..+.+.. ..+.+.|++.++|+++|+|++|+++..
T Consensus 80 ~~~~~~~--~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 80 PVLLDPD--GELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred ceEEcCc--chHHHhcCcCccceEEEECCCCcEEEE
Confidence 6665543 468999999999999999999999864
No 74
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.62 E-value=2.1e-15 Score=135.09 Aligned_cols=114 Identities=23% Similarity=0.453 Sum_probs=96.3
Q ss_pred Ccccee-cCCCCceecccCC-CCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcC
Q 008336 338 DLDFVV-GKNGGKVPVSDLA-GKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGM 414 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~-gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 414 (569)
.|+|.+ +.+|+.++++++. ++++ |++||++||++|+.++|.|++++++++++ ++.||+|+.|.. +....|.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCH-HHHHHHHHhc
Confidence 478887 8999999999875 4554 55556999999999999999999999865 699999999865 4555777776
Q ss_pred CCcccccCchhhHHHHHhcCCC-----------------------------CccEEEEECCCCcEEEccc
Q 008336 415 PWLALPFGDARKASLSRKFKVS-----------------------------GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 415 ~~~~~~~~~d~~~~l~~~~~v~-----------------------------~~Pt~~lid~~G~i~~~~~ 455 (569)
+ +.+|++.|.+..+.+.|++. .+|++||||++|+|++.+.
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 6 68999999999999999984 7999999999999999853
No 75
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.62 E-value=2e-15 Score=135.82 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCccceecCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 337 GDLDFVVGKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 337 ~~~~f~~~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
..++|.+ .+|+.+++++++ +|+||++||++|++++|.|+++++++ ++.|++|++|...+
T Consensus 54 ~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~-----g~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY-----GFSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc-----CCEEEEEEeCCCCC-----------
Confidence 4567766 489999999987 77899999999999999999999997 38999999986642
Q ss_pred cccccCch-hhHHHHHhcCC--CCccEEEEECCCCcEEE
Q 008336 417 LALPFGDA-RKASLSRKFKV--SGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 417 ~~~~~~~d-~~~~l~~~~~v--~~~Pt~~lid~~G~i~~ 452 (569)
..||...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 57888764 55667788995 69999999999999975
No 76
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.61 E-value=3e-15 Score=141.01 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=110.9
Q ss_pred hccCCcccee-cCCCCceecccCCCCEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHHHH
Q 008336 334 LVSGDLDFVV-GKNGGKVPVSDLAGKTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDE 409 (569)
Q Consensus 334 ~~~~~~~f~~-~~~g~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~~~ 409 (569)
+....|+|.+ +.+|+.+.+++++||++ |+.||+.|||+|..+++.|++++++|+++ ++.|++||+|.. ...|.+
T Consensus 4 ~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 4 LGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHH
Confidence 3445699988 78998888899999975 67888999999999999999999999876 699999999974 345666
Q ss_pred HHhcC--CCcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 410 FFKGM--PWLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 410 ~~~~~--~~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
+++++ .-+.||++.|.+..+++.||+. ..|++||||++|+|+...... ...+++++++.+.
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p----------~~~gr~~~eilr~ 151 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYP----------QEVGRNVDEILRA 151 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcC----------CCCCCCHHHHHHH
Confidence 66643 1367999999999999999983 689999999999999984211 1234567777777
Q ss_pred hhhh
Q 008336 481 YNEM 484 (569)
Q Consensus 481 l~~l 484 (569)
|+.+
T Consensus 152 l~~l 155 (215)
T PRK13599 152 LKAL 155 (215)
T ss_pred HHHh
Confidence 7665
No 77
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.61 E-value=2.8e-15 Score=133.08 Aligned_cols=116 Identities=28% Similarity=0.457 Sum_probs=96.1
Q ss_pred ccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHh-hHhhHHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHHHHHH
Q 008336 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGY 89 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~-C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~---~~~~~~~~ 89 (569)
.+|+| +.+.+|+.+++++++|| ++|+||++||++ |.++++.|+++++++++.+ ++.+++|+.|. +.+.+++|
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 47999 55789999999999999 999999999997 9999999999999998763 59999999974 46889999
Q ss_pred HHhCCCcccccCCch-hHHHHHHhcCCCCc--------------cEEEEECCCCcEEEc
Q 008336 90 FSKMPWLAVPFSDSE-TRDKLDELFKVMGI--------------PHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~--------------P~~~lid~~G~i~~~ 133 (569)
+++++..+..+.+.. ....+++.||+... |+++|||++|+|+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 999875555454433 34578899997543 578999999999874
No 78
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.61 E-value=1e-14 Score=138.57 Aligned_cols=173 Identities=17% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCc-EEEEEec---CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 36 LKGK-IGLYFSA---SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 36 ~~gk-vlv~F~a---~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
+++. .++.|++ +||++|+.+.|.+.++++++. ++.+..+++|.+.. ..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~---~~~i~~v~vd~~~~----------------------~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP---KLKLEIYDFDTPED----------------------KEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC---CceEEEEecCCccc----------------------HHHHH
Confidence 4445 6666877 999999999999999999884 35566666663322 36999
Q ss_pred hcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceee
Q 008336 112 LFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS 191 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~ 191 (569)
.|+|.++||+++++ +|+.+.. +..|. .+..++..+++...... .....+ +.+.+.
T Consensus 72 ~~~V~~~Pt~~~f~-~g~~~~~------~~~G~----~~~~~l~~~i~~~~~~~---~~~~~L-----------~~~~~~ 126 (215)
T TIGR02187 72 KYGVERVPTTIILE-EGKDGGI------RYTGI----PAGYEFAALIEDIVRVS---QGEPGL-----------SEKTVE 126 (215)
T ss_pred HcCCCccCEEEEEe-CCeeeEE------EEeec----CCHHHHHHHHHHHHHhc---CCCCCC-----------CHHHHH
Confidence 99999999999994 5665420 11111 12234444443221100 000000 111011
Q ss_pred e-ccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHH
Q 008336 192 V-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (569)
Q Consensus 192 ~-~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~ 270 (569)
. ..+++..+++.|+++||++|+.+.+.+.++.... .. +.+..+|.+. ...++
T Consensus 127 ~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~--i~~~~vD~~~---------------------~~~~~ 179 (215)
T TIGR02187 127 LLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DK--ILGEMIEANE---------------------NPDLA 179 (215)
T ss_pred HHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----Cc--eEEEEEeCCC---------------------CHHHH
Confidence 1 1235556677799999999999988777766542 12 3343444433 45778
Q ss_pred hhcccCCCceEEEEC
Q 008336 271 RYFELSTLPTLVIIG 285 (569)
Q Consensus 271 ~~f~v~~~Ptlvi~~ 285 (569)
+.|+|.++||+++.+
T Consensus 180 ~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 180 EKYGVMSVPKIVINK 194 (215)
T ss_pred HHhCCccCCEEEEec
Confidence 899999999999975
No 79
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.61 E-value=1.2e-14 Score=133.73 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=94.8
Q ss_pred ccccCccCCceec----CCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 13 SLLSSSARDFLIR----SNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 13 ~~~g~~~pdf~~~----~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
..+|..+|+|... -+...++|++++|| ++|+|| ++||+.|..+++.|++++++|.+.+ ++|++||.| +....
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g-~~vigIS~D-~~~~~ 79 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG-VDVYSVSTD-THFTH 79 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC-CEEEEEeCC-CHHHH
Confidence 4689999999432 34467788999999 999999 9999999999999999999998875 999999998 45667
Q ss_pred HHHHHhC----CCcccccCCchhHHHHHHhcCC----CCc--cEEEEECCCCcEEEc
Q 008336 87 KGYFSKM----PWLAVPFSDSETRDKLDELFKV----MGI--PHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~i~~~ 133 (569)
++|.+.. +..+..+.|. ...+++.||+ .++ |++||||++|+|++.
T Consensus 80 ~a~~~~~~~~~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 80 KAWHSSSETIAKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred HHHHHhhccccCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 7777653 3444445554 3589999998 356 999999999999875
No 80
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.60 E-value=9.1e-15 Score=137.72 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=95.3
Q ss_pred cccCccCCce-ecCCCceeecCCCCCc-E-EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--HHHHHH
Q 008336 14 LLSSSARDFL-IRSNGDQVKLDSLKGK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKG 88 (569)
Q Consensus 14 ~~g~~~pdf~-~~~~g~~v~l~~~~gk-v-lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~--~~~~~~ 88 (569)
.+|+++|+|. .+.+|+...+++++|| + |+.||++|||+|..+++.|++++++|.+.| +.|++||+|.. ...|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g-v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN-TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 6899999994 5678988888999999 4 678899999999999999999999999886 99999999964 334666
Q ss_pred HHHhC---CCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 89 YFSKM---PWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 89 ~~~~~---~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
++++. +..+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 82 ~i~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred hHHHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 66653 44445455544 3789999984 68999999999999875
No 81
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.60 E-value=5.5e-15 Score=127.74 Aligned_cols=104 Identities=27% Similarity=0.500 Sum_probs=88.1
Q ss_pred CCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHHhCCCc
Q 008336 20 RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-~~~~~~~~~~~~~~~ 96 (569)
|+| +.+.+|+.++++.++|| ++|+||++||++|+.++|.|.+++++ +.+++|+++. +.+.+++++++++..
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~~ 74 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQKKGYG 74 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHHcCCC
Confidence 788 55689999999999999 99999999999999999999999876 4577788775 488999999998876
Q ss_pred ccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+..+.+.+ ..+++.|++.++|+++++|++| ++.
T Consensus 75 ~~~~~d~~--~~~~~~~~i~~~P~~~vid~~g-i~~ 107 (123)
T cd03011 75 FPVINDPD--GVISARWGVSVTPAIVIVDPGG-IVF 107 (123)
T ss_pred ccEEECCC--cHHHHhCCCCcccEEEEEcCCC-eEE
Confidence 55444433 4699999999999999999988 665
No 82
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.59 E-value=8.9e-15 Score=140.28 Aligned_cols=138 Identities=17% Similarity=0.137 Sum_probs=106.8
Q ss_pred hccCCcccee-c-CCC--CceecccC-CCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHH
Q 008336 334 LVSGDLDFVV-G-KNG--GKVPVSDL-AGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSF 407 (569)
Q Consensus 334 ~~~~~~~f~~-~-~~g--~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~ 407 (569)
.....|+|.+ + .+| ..++++++ +||++||+|| +.||++|..+++.|++++++++++ +++|++||+|.. ...
T Consensus 70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~--gv~VigIS~Ds~-~~h 146 (261)
T PTZ00137 70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER--GVKVLGVSVDSP-FSH 146 (261)
T ss_pred CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCH-HHH
Confidence 3445689986 4 344 46899998 8888888888 899999999999999999999876 799999999963 333
Q ss_pred HHHHh----cC--CCcccccCchhhHHHHHhcCCC-----CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 408 DEFFK----GM--PWLALPFGDARKASLSRKFKVS-----GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 408 ~~~~~----~~--~~~~~~~~~d~~~~l~~~~~v~-----~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
++|.+ +. .-+.||++.|.+..+++.||+. ..|++||||++|+|++...... -.++.+++
T Consensus 147 ~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~----------~~gr~v~e 216 (261)
T PTZ00137 147 KAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDL----------GLGRSVDE 216 (261)
T ss_pred HHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCC----------CCCCCHHH
Confidence 44433 22 2377999999999999999985 5899999999999999853221 23346777
Q ss_pred HHHHhhhh
Q 008336 477 IDGQYNEM 484 (569)
Q Consensus 477 l~~~l~~l 484 (569)
+.+.|+.+
T Consensus 217 iLr~l~al 224 (261)
T PTZ00137 217 TLRLFDAV 224 (261)
T ss_pred HHHHHHHh
Confidence 77777654
No 83
>PRK15000 peroxidase; Provisional
Probab=99.59 E-value=6.9e-15 Score=137.31 Aligned_cols=138 Identities=16% Similarity=0.215 Sum_probs=103.9
Q ss_pred ccCCcccee-cC--CCCc---eecccC-CCCEEEEEEecC-CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh--
Q 008336 335 VSGDLDFVV-GK--NGGK---VPVSDL-AGKTILLYFSAH-WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-- 404 (569)
Q Consensus 335 ~~~~~~f~~-~~--~g~~---v~l~~~-~gk~vll~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~-- 404 (569)
....|+|.+ +. +|+. ++++++ +||++||+||+. ||+.|..+++.|++++++|+++ +++|++||+|...
T Consensus 5 g~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~ 82 (200)
T PRK15000 5 TRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVH 82 (200)
T ss_pred CCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHH
Confidence 345689987 43 3454 345554 799999999985 9999999999999999999876 7999999999542
Q ss_pred hHHHH-HHhcCC--CcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 405 TSFDE-FFKGMP--WLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 405 ~~~~~-~~~~~~--~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
..|.+ +.+..+ -+.||++.|....+++.|++. ++|++||||++|+|++...+.+ -.+++++
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~----------~~gr~~~ 152 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDL----------PLGRNID 152 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCC----------CCCCCHH
Confidence 22332 233333 268999999999999999998 7999999999999999854321 2234677
Q ss_pred HHHHHhhhh
Q 008336 476 EIDGQYNEM 484 (569)
Q Consensus 476 ~l~~~l~~l 484 (569)
++.+.++.+
T Consensus 153 eilr~l~al 161 (200)
T PRK15000 153 EMLRMVDAL 161 (200)
T ss_pred HHHHHHHHh
Confidence 777777654
No 84
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=1e-14 Score=167.60 Aligned_cols=117 Identities=26% Similarity=0.355 Sum_probs=100.5
Q ss_pred cCCcccee-c--CCCCceec-ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC---CC--ChhH
Q 008336 336 SGDLDFVV-G--KNGGKVPV-SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS---DR--DQTS 406 (569)
Q Consensus 336 ~~~~~f~~-~--~~g~~v~l-~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~---d~--~~~~ 406 (569)
...|+|.. + .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||+|+. |. +.+.
T Consensus 395 ~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~ 472 (1057)
T PLN02919 395 TKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEA 472 (1057)
T ss_pred CcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHH
Confidence 34578865 3 68889988 5899999999999999999999999999999999865 699999974 32 4567
Q ss_pred HHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEccc
Q 008336 407 FDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 407 ~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
+++++.+++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+..
T Consensus 473 ~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~ 520 (1057)
T PLN02919 473 IRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLS 520 (1057)
T ss_pred HHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEe
Confidence 888988887 678888888889999999999999999999999998843
No 85
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.59 E-value=1e-14 Score=129.08 Aligned_cols=113 Identities=25% Similarity=0.334 Sum_probs=95.9
Q ss_pred ccCCc-eecCCCceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC-
Q 008336 18 SARDF-LIRSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM- 93 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~- 93 (569)
.+|+| +.+.+|+.+++++++|| ++|+|| ++||++|...+|.|++++++|+.. ++.+++|+.| +.+.+++|++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-CHHHHHHHHhccc
Confidence 37999 55789999999999999 999999 789999999999999999999766 4999999987 567889999988
Q ss_pred CCcccccCCchhHHHHHHhcCCCCcc---------EEEEECCCCcEEEcC
Q 008336 94 PWLAVPFSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~i~~~~ 134 (569)
+..+..+.|... .+.+.|++...| +++|+|++|+|++..
T Consensus 79 ~~~~~~l~D~~~--~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 79 GLNFPLLSDPDG--EFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred CCCceEEECCCh--HHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 665555555443 788999988665 899999999999853
No 86
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.6e-14 Score=147.06 Aligned_cols=184 Identities=22% Similarity=0.354 Sum_probs=129.1
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
.+..+++.|+++||++|..+.|.+.++...++++ +.+..+|.++ ++.+++.|+|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-----~~~~~vd~~~---------------------~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-----VKIGAVDCDE---------------------HKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-----eEEEEeCchh---------------------hHHHHHhcCC
Confidence 5578899999999999999999999999999874 7777888776 7899999999
Q ss_pred CCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cCCCCceeccc
Q 008336 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GKNGGKVPVSD 354 (569)
Q Consensus 276 ~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~~g~~v~l~~ 354 (569)
.++||+.++.++.+... ..+ +-+.+.+.++............... .-+.+ ..+...+....
T Consensus 100 ~gfPtl~~f~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~l~~~~~~~~~~~~ 161 (383)
T KOG0191|consen 100 QGFPTLKVFRPGKKPID--------YSG----PRNAESLAEFLIKELEPSVKKLVEG------EVFELTKDNFDETVKDS 161 (383)
T ss_pred ccCcEEEEEcCCCceee--------ccC----cccHHHHHHHHHHhhccccccccCC------ceEEccccchhhhhhcc
Confidence 99999999987722211 111 2345555555554332111111110 01122 22322222222
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
...++|.||+|||++|+.++|.+.++...++. ...+.+..++.+.. ..++..++
T Consensus 162 --~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~-----------------------~~~~~~~~ 215 (383)
T KOG0191|consen 162 --DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVH-----------------------KSLASRLE 215 (383)
T ss_pred --CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchH-----------------------HHHhhhhc
Confidence 56899999999999999999999999998874 23567766665522 35889999
Q ss_pred CCCccEEEEECCCCc
Q 008336 435 VSGIPMLVAIGPSGR 449 (569)
Q Consensus 435 v~~~Pt~~lid~~G~ 449 (569)
|+++||+.++-++..
T Consensus 216 v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE 230 (383)
T ss_pred ccCCceEEEecCCCc
Confidence 999999999965555
No 87
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.58 E-value=1.1e-14 Score=137.36 Aligned_cols=138 Identities=12% Similarity=0.200 Sum_probs=107.5
Q ss_pred ccCCcccee-cCCCCceec-ccCCCCEEEE-EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChh--HHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPV-SDLAGKTILL-YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQT--SFDE 409 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l-~~~~gk~vll-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~--~~~~ 409 (569)
....|+|.+ +.+|+ +.+ ++++||+++| +||+.||+.|..+++.|++++++|+++ +++|++||+|.... .|.+
T Consensus 10 G~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~ 86 (215)
T PRK13191 10 GEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVM 86 (215)
T ss_pred CCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHh
Confidence 345699988 77776 555 5589997665 778999999999999999999999876 69999999997533 4555
Q ss_pred HHhcC-C-CcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 410 FFKGM-P-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 410 ~~~~~-~-~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
++++. + -+.||++.|.+..+++.||+. ..|++||||++|+|++.....+ ..+++++++.+.
T Consensus 87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~----------~~gr~~~eilr~ 156 (215)
T PRK13191 87 WIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPM----------EIGRNIDEILRA 156 (215)
T ss_pred hHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCC----------CCCCCHHHHHHH
Confidence 55532 2 377999999999999999974 4799999999999999853221 234577888888
Q ss_pred hhhhh
Q 008336 481 YNEMA 485 (569)
Q Consensus 481 l~~l~ 485 (569)
|+.+.
T Consensus 157 l~alq 161 (215)
T PRK13191 157 IRALQ 161 (215)
T ss_pred HHHhh
Confidence 77653
No 88
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.58 E-value=1.3e-14 Score=127.96 Aligned_cols=98 Identities=20% Similarity=0.413 Sum_probs=78.0
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.||++||+||++||++|+.+.|.|.++++++.++ +.++.|++|.+.. ..+++.|+|
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~V 74 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYRV 74 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcCC
Confidence 5899999999999999999999999999998754 7899998886421 246789999
Q ss_pred CCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc
Q 008336 436 SGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN 491 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~ 491 (569)
.++|+++||+++|+++.+..|. . ..++|.+.|++++++.|-.
T Consensus 75 ~~iPt~v~~~~~G~~v~~~~G~-----------~---~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 75 DGIPHFVFLDREGNEEGQSIGL-----------Q---PKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred CCCCEEEEECCCCCEEEEEeCC-----------C---CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999884321 1 1245677777777666543
No 89
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.57 E-value=1.5e-14 Score=135.95 Aligned_cols=135 Identities=16% Similarity=0.210 Sum_probs=102.4
Q ss_pred CCcccee-cCCCCceecccCCC-CEE-EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh-
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAG-KTI-LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK- 412 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~- 412 (569)
..|+|.+ +.+| .+++++++| |++ |+.||++|||.|..+++.|++++++++++ +++|++||+|.. ....+|.+
T Consensus 4 ~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~-~~~~~~~~~ 79 (203)
T cd03016 4 TAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSV-ESHIKWIED 79 (203)
T ss_pred CCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCH-HHHHHHHhh
Confidence 4589988 6666 689999998 654 55788999999999999999999999876 799999999964 33333332
Q ss_pred --cC--CCcccccCchhhHHHHHhcCCC----C----ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHH
Q 008336 413 --GM--PWLALPFGDARKASLSRKFKVS----G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQ 480 (569)
Q Consensus 413 --~~--~~~~~~~~~d~~~~l~~~~~v~----~----~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~ 480 (569)
.+ .-+.||++.|.+..+++.|++. + .|++||||++|+|+....... ..++..+++.+.
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~----------~~gr~~~ell~~ 149 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPA----------TTGRNFDEILRV 149 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCC----------CCCCCHHHHHHH
Confidence 21 2377899999999999999986 2 457999999999998853221 123456777777
Q ss_pred hhhhh
Q 008336 481 YNEMA 485 (569)
Q Consensus 481 l~~l~ 485 (569)
|+++.
T Consensus 150 l~~lq 154 (203)
T cd03016 150 VDALQ 154 (203)
T ss_pred HHHHh
Confidence 76653
No 90
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.57 E-value=1.4e-14 Score=131.30 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=86.1
Q ss_pred cccCccCCceecC-----------CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEE------E
Q 008336 14 LLSSSARDFLIRS-----------NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV------I 75 (569)
Q Consensus 14 ~~g~~~pdf~~~~-----------~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~v------v 75 (569)
.+|++.|...++. +.+.++.++++|| ++|+|||+||++|+.++|.+.++.++ ++.+ +
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~ 98 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTT 98 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceE
Confidence 4689998885532 3356788899999 99999999999999999999999443 3778 9
Q ss_pred EEeCCCCHHHHHHHHH----hCC--Cccc-ccCCchhHHHHHHhcCCCCccEE-EEECCCCcEEEc
Q 008336 76 FVSGDEDDEAFKGYFS----KMP--WLAV-PFSDSETRDKLDELFKVMGIPHL-VILDENGKVLSD 133 (569)
Q Consensus 76 ~v~~d~~~~~~~~~~~----~~~--~~~~-~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~i~~~ 133 (569)
+|+.|+.......|++ +.. .++. .+.|.. ..+...|++.++|++ |+||++|+|+..
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~--g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK--GAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred EEECccchhhHHHHHHHHHHHhcccCCcceEEECCc--chHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 9999986655555544 443 3322 234443 357789999999988 899999999975
No 91
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.57 E-value=1.4e-14 Score=129.72 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=91.7
Q ss_pred ccCCc-eecCCCceeecCCCC-Cc-E-EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhC
Q 008336 18 SARDF-LIRSNGDQVKLDSLK-GK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (569)
Q Consensus 18 ~~pdf-~~~~~g~~v~l~~~~-gk-v-lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~ 93 (569)
.+|+| +.+.+|+.++++++. ++ + |++||++||++|+.++|.|+++++++.+.+ +.+++|+.+.. +....|.++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~-v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG-VELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC-eEEEEEeCCCH-HHHHHHHHhc
Confidence 37999 456899999999875 45 5 454579999999999999999999998775 99999998854 4556788888
Q ss_pred CCcccccCCchhHHHHHHhcCCC-----------------------------CccEEEEECCCCcEEEc
Q 008336 94 PWLAVPFSDSETRDKLDELFKVM-----------------------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~i~~~ 133 (569)
++.+..+.|.+ ..+.+.|++. .+|.++|||++|+|+..
T Consensus 79 ~~~~p~~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 79 FLPFPVYADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred CCCCeEEECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 87766666655 3688999984 79999999999999874
No 92
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.57 E-value=2.7e-14 Score=133.89 Aligned_cols=116 Identities=21% Similarity=0.301 Sum_probs=90.8
Q ss_pred cccCccCCcee-cCCCceeecCCCCCc-EEE-EEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH--HH-H
Q 008336 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AF-K 87 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g~~v~l~~~~gk-vlv-~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~--~~-~ 87 (569)
.+|+++|+|.+ +..| .+++++++|| ++| +||++||++|..+++.|++++++|++.+ +.|++||+|.... .| +
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~-~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG-VELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 47999999955 4556 7999999999 665 6899999999999999999999999875 9999999995422 22 3
Q ss_pred HHHHhCC--CcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKMP--WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
++.++.+ +.+..+.|.+ ..+++.||+. .+|++||||++|+|+..
T Consensus 81 ~~~~~~g~~~~fPll~D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 81 DIEERFGIKIPFPVIADID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred hHHHhcCCCceEEEEECCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 3344454 2344455544 4789999984 58999999999999864
No 93
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.56 E-value=1.2e-14 Score=166.88 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=100.3
Q ss_pred cccCccCCceec---CCCceeec-CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC---C--CCH
Q 008336 14 LLSSSARDFLIR---SNGDQVKL-DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---D--EDD 83 (569)
Q Consensus 14 ~~g~~~pdf~~~---~~g~~v~l-~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~---d--~~~ 83 (569)
..|.++|+|... .+|+++++ ++++|| |||+|||+||++|+.++|.|++++++|++++ +.|++|+. | .+.
T Consensus 392 ~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~-~~vvgV~~~~~D~~~~~ 470 (1057)
T PLN02919 392 KTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP-FTVVGVHSAKFDNEKDL 470 (1057)
T ss_pred ccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC-eEEEEEecccccccccH
Confidence 458999999442 68999998 689999 9999999999999999999999999998775 99999974 3 356
Q ss_pred HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 84 EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.+++++.++++.+..+.+... .+.+.|++.++|+++|||++|+++.+
T Consensus 471 ~~~~~~~~~~~i~~pvv~D~~~--~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 471 EAIRNAVLRYNISHPVVNDGDM--YLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHHhCCCccEEECCch--HHHHhcCCCccceEEEECCCCeEEEE
Confidence 7899999999887766655443 68899999999999999999999874
No 94
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.55 E-value=3.1e-14 Score=133.47 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=105.9
Q ss_pred ccCCcccee-----cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHH
Q 008336 335 VSGDLDFVV-----GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFD 408 (569)
Q Consensus 335 ~~~~~~f~~-----~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~ 408 (569)
....|+|.+ +.+|+++++++++||+++|+|| +.||++|..+++.|.+++++++++ +++|++||+|.... ..
T Consensus 9 G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~-~~ 85 (199)
T PTZ00253 9 NHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYA-HL 85 (199)
T ss_pred CCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHH-HH
Confidence 345688873 4567899999999999999999 488999999999999999999876 79999999986533 22
Q ss_pred HHHh--c----CCCcccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHH
Q 008336 409 EFFK--G----MPWLALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKE 476 (569)
Q Consensus 409 ~~~~--~----~~~~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~ 476 (569)
.+.. + ..-+.||++.|.++++++.||+. .+|+.||||++|+|+...... .+ .++++++
T Consensus 86 ~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~---------~~-~~r~~~e 155 (199)
T PTZ00253 86 QWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVND---------MP-VGRNVEE 155 (199)
T ss_pred HHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecC---------CC-CCCCHHH
Confidence 2221 1 22378999999999999999986 469999999999999875321 12 3456666
Q ss_pred HHHHhhhh
Q 008336 477 IDGQYNEM 484 (569)
Q Consensus 477 l~~~l~~l 484 (569)
+.+.|+.+
T Consensus 156 ~l~~l~a~ 163 (199)
T PTZ00253 156 VLRLLEAF 163 (199)
T ss_pred HHHHHHhh
Confidence 66666544
No 95
>PRK15000 peroxidase; Provisional
Probab=99.55 E-value=6.7e-14 Score=130.66 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=89.4
Q ss_pred ccccCccCCceec-C--CCcee---ecCCC-CCc-EEEEEecC-CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 13 SLLSSSARDFLIR-S--NGDQV---KLDSL-KGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 13 ~~~g~~~pdf~~~-~--~g~~v---~l~~~-~gk-vlv~F~a~-wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
.++|.++|+|.+. . +|+.+ +++++ +|| ++|+||+. ||+.|..+++.|++++++|++.+ ++|++||+|..
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g-~~vigvS~D~~- 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG-VEVVGVSFDSE- 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCH-
Confidence 4589999999543 3 45544 45554 799 99999994 99999999999999999999875 99999999953
Q ss_pred HHHHHH----HHhCCC---cccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 84 EAFKGY----FSKMPW---LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 84 ~~~~~~----~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
...+.+ .++.+. .+..+.|.+ ..+++.||+. ++|++||||++|+|+..
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYAMVADVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred HHHHHHHhhHHHhCCccccCceEEECCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 333333 333432 334445544 4799999997 79999999999999874
No 96
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.54 E-value=7.5e-14 Score=131.18 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=88.4
Q ss_pred ccCccCCcee-cCCCceeecCCCCC-c--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 15 LSSSARDFLI-RSNGDQVKLDSLKG-K--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 15 ~g~~~pdf~~-~~~g~~v~l~~~~g-k--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
+|+++|+|.+ +.+| .+++++++| | +|+.||++|||.|..+++.|++++++|++.+ ++|++|++|.. ....++.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g-v~vigvS~D~~-~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN-VKLIGLSVDSV-ESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEECCCH-HHHHHHH
Confidence 5899999954 4566 599999988 6 4557899999999999999999999999875 99999999953 3333343
Q ss_pred Hh------CCCcccccCCchhHHHHHHhcCCC----C----ccEEEEECCCCcEEEc
Q 008336 91 SK------MPWLAVPFSDSETRDKLDELFKVM----G----IPHLVILDENGKVLSD 133 (569)
Q Consensus 91 ~~------~~~~~~~~~~~~~~~~l~~~~~v~----~----~P~~~lid~~G~i~~~ 133 (569)
+. .++.+..+.|.+ ..+++.||+. + .|++||||++|+|+..
T Consensus 78 ~~i~~~~~~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred hhHHHhcCCCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 32 455555555544 4789999975 2 4579999999999874
No 97
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.54 E-value=3.5e-14 Score=118.26 Aligned_cols=74 Identities=18% Similarity=0.424 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+||+|||+|||+||++|+.+.|.|+++++++ . ++.++.|+.|.+.. ...+++.|+|
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~--------------------~~~l~~~~~V 69 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDS--------------------TMELCRREKI 69 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChH--------------------HHHHHHHcCC
Confidence 5899999999999999999999999999988 3 47888888876531 1358899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 70 ~~~Pt~~~~-~~G~~v~~~ 87 (103)
T cd02985 70 IEVPHFLFY-KDGEKIHEE 87 (103)
T ss_pred CcCCEEEEE-eCCeEEEEE
Confidence 999999888 899998874
No 98
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.54 E-value=4.6e-14 Score=117.29 Aligned_cols=71 Identities=11% Similarity=0.306 Sum_probs=64.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++++||+|||+||+||+.+.|.|.++++++++. +.++.|++|..+ ++++.|+|+
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~-----------------------~la~~~~V~ 67 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP-----------------------DFNKMYELY 67 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 689999999999999999999999999999754 788889988776 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+.
T Consensus 68 ~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 68 DPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCEEEEE-ECCEEEEEE
Confidence 99999999 899999885
No 99
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.53 E-value=1.2e-13 Score=130.15 Aligned_cols=117 Identities=20% Similarity=0.290 Sum_probs=91.7
Q ss_pred ccccCccCCce-ecCCCceeec-CCCCCc-EEE-EEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH--HH
Q 008336 13 SLLSSSARDFL-IRSNGDQVKL-DSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AF 86 (569)
Q Consensus 13 ~~~g~~~pdf~-~~~~g~~v~l-~~~~gk-vlv-~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~--~~ 86 (569)
..+|+++|+|. .+.+|+ +.+ ++++|| ++| +||++||+.|..+++.|++++++|++.+ ++|++||+|.... .|
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g-~~VigvS~Ds~~~h~aw 84 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN-TELIGLSVDSNISHIEW 84 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHH
Confidence 35899999995 456786 556 458999 554 7899999999999999999999999885 9999999996543 45
Q ss_pred HHHHHh---CCCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSK---MPWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
.+++++ .+..+..+.|.+ ..+++.||+. ..|++||||++|+|+..
T Consensus 85 ~~~~~~~~~~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 85 VMWIEKNLKVEVPFPIIADPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred HhhHHHhcCCCCceEEEECCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 555654 244455555554 4799999974 47999999999999874
No 100
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.53 E-value=1.2e-13 Score=132.53 Aligned_cols=117 Identities=22% Similarity=0.197 Sum_probs=92.2
Q ss_pred ccccCccCCcee-c-CCC--ceeecCCC-CCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHH
Q 008336 13 SLLSSSARDFLI-R-SNG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85 (569)
Q Consensus 13 ~~~g~~~pdf~~-~-~~g--~~v~l~~~-~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~ 85 (569)
.++|+.+|+|.+ + .+| +.++++++ +|| ++|+|| ++||++|..+++.|++++++|++.| ++|++||+|. ...
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds-~~~ 145 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDS-PFS 145 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCC-HHH
Confidence 378999999954 3 345 46899998 888 777776 9999999999999999999999886 9999999986 444
Q ss_pred HHHHHH----h---CCCcccccCCchhHHHHHHhcCCC-----CccEEEEECCCCcEEEc
Q 008336 86 FKGYFS----K---MPWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~----~---~~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~i~~~ 133 (569)
.++|.+ + .+..+..+.|.+ ..+++.||+. ..|++||||++|+|++.
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~ 203 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHV 203 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEE
Confidence 444443 2 234444455554 5799999985 58999999999999874
No 101
>PRK13189 peroxiredoxin; Provisional
Probab=99.52 E-value=1e-13 Score=131.52 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=102.4
Q ss_pred ccCCcccee-cCCCCceeccc-CCCCEEE-EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSD-LAGKTIL-LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
....|+|.+ +..| .+++++ ++||+++ ++||+.||+.|..+++.|++++++|+++ +++|++||+|... ...+|.
T Consensus 12 G~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~-~h~aw~ 87 (222)
T PRK13189 12 GDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVF-SHIKWV 87 (222)
T ss_pred CCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHH-HHHHHH
Confidence 345699988 6666 477766 5899555 5778999999999999999999999876 7999999999653 233333
Q ss_pred h----cCC-CcccccCchhhHHHHHhcCCC-------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHH
Q 008336 412 K----GMP-WLALPFGDARKASLSRKFKVS-------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDG 479 (569)
Q Consensus 412 ~----~~~-~~~~~~~~d~~~~l~~~~~v~-------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~ 479 (569)
+ ..+ -+.||++.|.+..+++.||+. ..|++||||++|+|++...... ..++.++++.+
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~----------~~gr~~~eilr 157 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQ----------EVGRNMDEILR 157 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCC----------CCCCCHHHHHH
Confidence 2 222 367899999999999999975 5799999999999998753221 12345566666
Q ss_pred Hhhhhh
Q 008336 480 QYNEMA 485 (569)
Q Consensus 480 ~l~~l~ 485 (569)
.|+.+.
T Consensus 158 ~l~alq 163 (222)
T PRK13189 158 LVKALQ 163 (222)
T ss_pred HHHHhh
Confidence 666553
No 102
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.51 E-value=6.6e-14 Score=125.98 Aligned_cols=98 Identities=23% Similarity=0.370 Sum_probs=75.5
Q ss_pred cCccCCceecCCCceeecCCCCCcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCC
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~ 95 (569)
..+.|+|.+ .+|+.+++++++ +|+||++|||+|++++|.|+++++++ + +.|++|++|...+ .
T Consensus 52 ~~~~~~f~l-~dG~~v~lsd~~---lV~FwaswCp~C~~e~P~L~~l~~~~---g-~~Vi~Vs~D~~~~----------~ 113 (181)
T PRK13728 52 KPAPRWFRL-SNGRQVNLADWK---VVLFMQGHCPYCHQFDPVLKQLAQQY---G-FSVFPYTLDGQGD----------T 113 (181)
T ss_pred CCCCCccCC-CCCCEeehhHce---EEEEECCCCHhHHHHHHHHHHHHHHc---C-CEEEEEEeCCCCC----------C
Confidence 345567733 499999999998 77899999999999999999999997 2 8999999986532 1
Q ss_pred cccccCCchhHHHHHHhcCC--CCccEEEEECCCCcEEE
Q 008336 96 LAVPFSDSETRDKLDELFKV--MGIPHLVILDENGKVLS 132 (569)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v--~~~P~~~lid~~G~i~~ 132 (569)
.+..+.+.. ...+...|++ .++|++||||++|+++.
T Consensus 114 ~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 114 AFPEALPAP-PDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCceEecCc-hhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 222223211 2357778995 69999999999999864
No 103
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.50 E-value=5.9e-14 Score=124.43 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=63.5
Q ss_pred CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchh
Q 008336 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDAR 425 (569)
Q Consensus 346 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~ 425 (569)
.|+.+.+++ ..+|+|||+||++|++++|.|+++++++ ++.|++|++|.... ..+|...+.
T Consensus 43 ~G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~-----~~~Vi~Vs~d~~~~-----------~~fp~~~~~ 102 (153)
T TIGR02738 43 QGRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF-----GLPVYAFSLDGQGL-----------TGFPDPLPA 102 (153)
T ss_pred cchhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc-----CCcEEEEEeCCCcc-----------cccccccCC
Confidence 366666544 5599999999999999999999999887 27899999986531 123332221
Q ss_pred hHHH-HHhc---CCCCccEEEEECCCCcEEE
Q 008336 426 KASL-SRKF---KVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 426 ~~~l-~~~~---~v~~~Pt~~lid~~G~i~~ 452 (569)
.... ...| ++.++|++|+||++|+++.
T Consensus 103 ~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 TPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred chHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 2223 3445 8899999999999988654
No 104
>PRK13189 peroxiredoxin; Provisional
Probab=99.50 E-value=2.4e-13 Score=129.02 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=87.8
Q ss_pred cccCccCCcee-cCCCceeecCC-CCCc-EE-EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 14 LLSSSARDFLI-RSNGDQVKLDS-LKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 14 ~~g~~~pdf~~-~~~g~~v~l~~-~~gk-vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.+|+++|+|.. +..|+ +++++ ++|| ++ ++||++||+.|..+++.|++++++|++.+ ++|++||+|... ...+|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~-v~VigvS~D~~~-~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN-TELIGLSIDQVF-SHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEECCCHH-HHHHH
Confidence 57999999955 46674 77776 5999 54 57789999999999999999999998875 999999999543 33333
Q ss_pred HH---h-C--CCcccccCCchhHHHHHHhcCCC-------CccEEEEECCCCcEEEc
Q 008336 90 FS---K-M--PWLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 90 ~~---~-~--~~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~i~~~ 133 (569)
++ + . +..+..+.|.+ ..+++.||+. .+|++||||++|+|+..
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 33 2 2 23344445544 4788999975 57999999999999874
No 105
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.49 E-value=1.2e-13 Score=126.22 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=69.3
Q ss_pred Ccccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-------CChhHHHH
Q 008336 338 DLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-------RDQTSFDE 409 (569)
Q Consensus 338 ~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-------~~~~~~~~ 409 (569)
..+|.+ +.+|+.++|++++||++||.|||+||++|+ +++.|++++++|+++ ++.|++|+++ .+.+++++
T Consensus 5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeeccccccCCCCCHHHHHH
Confidence 357777 899999999999999999999999999996 699999999999876 7999999986 35578889
Q ss_pred HHh-cCCCcccccC
Q 008336 410 FFK-GMPWLALPFG 422 (569)
Q Consensus 410 ~~~-~~~~~~~~~~ 422 (569)
|++ +++ +.||+.
T Consensus 82 f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 82 YCRTTWG-VTFPMF 94 (183)
T ss_pred HHHHccC-CCceeE
Confidence 987 555 567765
No 106
>PHA02278 thioredoxin-like protein
Probab=99.48 E-value=2.2e-13 Score=112.53 Aligned_cols=77 Identities=12% Similarity=0.267 Sum_probs=63.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+|||+||+||+.+.|.+.++++++.. ...++.|++|.++. + ..++++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 378999999999999999999999999887543 26788888886521 0 1258999999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
.++||++++ ++|+.+.+..
T Consensus 71 ~~iPT~i~f-k~G~~v~~~~ 89 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKYE 89 (103)
T ss_pred ccccEEEEE-ECCEEEEEEe
Confidence 999999999 7899998853
No 107
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.47 E-value=2.4e-13 Score=113.07 Aligned_cols=71 Identities=13% Similarity=0.313 Sum_probs=61.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+|||+||++|+.+.|.|.++++++++. .+.++.++.| .. ++++.|+|+
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~--~~~~~~vd~d-~~-----------------------~~~~~~~v~ 70 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD--LLHFATAEAD-TI-----------------------DTLKRYRGK 70 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC--cEEEEEEeCC-CH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999988743 4677888877 33 378999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+++.+.
T Consensus 71 ~~Pt~~~~-~~g~~~~~~ 87 (102)
T cd02948 71 CEPTFLFY-KNGELVAVI 87 (102)
T ss_pred cCcEEEEE-ECCEEEEEE
Confidence 99999999 689988874
No 108
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.47 E-value=5.5e-13 Score=125.03 Aligned_cols=116 Identities=17% Similarity=0.242 Sum_probs=90.3
Q ss_pred cccCccCCcee-c----CCCceeecCCCCCc-EEEEEec-CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHH
Q 008336 14 LLSSSARDFLI-R----SNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (569)
Q Consensus 14 ~~g~~~pdf~~-~----~~g~~v~l~~~~gk-vlv~F~a-~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~ 86 (569)
.+|+++|+|.. + .+|+.+++++++|| ++|+||+ .||++|..+++.|.+++++|.+.+ ++|++||+|.... .
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g-~~vv~IS~d~~~~-~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN-CEVLACSMDSEYA-H 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCHHH-H
Confidence 47999999953 2 36689999999999 9999995 889999999999999999999885 9999999996543 2
Q ss_pred HHHHHh------C-CCcccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 87 KGYFSK------M-PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 87 ~~~~~~------~-~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
.++... . .+.+..+.|.+ ..+++.||+. .+|++||||++|+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 85 LQWTLQERKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHHhChHhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 333211 1 13333344443 5799999985 46999999999999874
No 109
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.46 E-value=2.6e-13 Score=112.97 Aligned_cols=74 Identities=24% Similarity=0.521 Sum_probs=62.1
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
+.+|+ |+|+|||+||++|+.++|.|.++++++. ++.++.|++|.+.. ...+++.|
T Consensus 12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~---------------------~~~l~~~~ 67 (103)
T cd02985 12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDS---------------------TMELCRRE 67 (103)
T ss_pred HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChH---------------------HHHHHHHc
Confidence 34688 9999999999999999999999999982 48899999886532 12588999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 114 KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~ 133 (569)
+|.++||++++ ++|+++.+
T Consensus 68 ~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 68 KIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCCcCCEEEEE-eCCeEEEE
Confidence 99999998888 88988753
No 110
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.4e-13 Score=116.22 Aligned_cols=71 Identities=20% Similarity=0.563 Sum_probs=65.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+.||+|+|||+||+||+.+.|.|+++..+++++ +.+.-|++|... +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~-----------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP-----------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc-----------------------chHhhccee
Confidence 689999999999999999999999999999876 999999999776 489999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|..+.+-
T Consensus 115 avPtvlvf-knGe~~d~~ 131 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDRF 131 (150)
T ss_pred eeeEEEEE-ECCEEeeee
Confidence 99999999 899998763
No 111
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.46 E-value=3.6e-13 Score=111.96 Aligned_cols=71 Identities=17% Similarity=0.361 Sum_probs=62.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+|||+|+.+.|.|.++++++++ .+.++.|++|..+ .++..|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~------------------------~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVP------------------------DFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCH------------------------HHHHHcCC
Confidence 466 99999999999999999999999999864 3789999999875 48999999
Q ss_pred CCccEEEEECCCCcEEEcC
Q 008336 116 MGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~ 134 (569)
.++||++++ ++|+.+...
T Consensus 67 ~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred CCCCEEEEE-ECCEEEEEE
Confidence 999999999 789888753
No 112
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=4.2e-13 Score=110.92 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=57.7
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
++++|| ++|+|||+||++|+.++|.|.+++++++ ++.++.|+.+ .. ..+++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~------------------------~~l~~ 66 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIK------------------------PSLLS 66 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCC------------------------HHHHH
Confidence 457899 9999999999999999999999999985 2667777665 22 25889
Q ss_pred hcCCCCccEEEEECCCCcE
Q 008336 112 LFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i 130 (569)
.|+|.++||++++++ |.+
T Consensus 67 ~~~V~~~PT~~lf~~-g~~ 84 (100)
T cd02999 67 RYGVVGFPTILLFNS-TPR 84 (100)
T ss_pred hcCCeecCEEEEEcC-Cce
Confidence 999999999999964 543
No 113
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.44 E-value=4.5e-13 Score=110.71 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=56.2
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
+++||+++|+|||+||++|+.++|.|+++++++++ +.++.|+.+ .. ..+++.
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~-----------------------~~l~~~ 67 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIK-----------------------PSLLSR 67 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCC-----------------------HHHHHh
Confidence 45799999999999999999999999999998852 667777555 22 258899
Q ss_pred cCCCCccEEEEECCC
Q 008336 433 FKVSGIPMLVAIGPS 447 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~ 447 (569)
|+|+++||+++++++
T Consensus 68 ~~V~~~PT~~lf~~g 82 (100)
T cd02999 68 YGVVGFPTILLFNST 82 (100)
T ss_pred cCCeecCEEEEEcCC
Confidence 999999999999643
No 114
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.43 E-value=1e-12 Score=110.97 Aligned_cols=73 Identities=18% Similarity=0.434 Sum_probs=63.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.|++++|+||++||++|+.+.|.+.++++++++. ++.++.|++|..+ .+++.|+|
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~-----------------------~l~~~~~V 77 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHER-----------------------RLARKLGA 77 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccH-----------------------HHHHHcCC
Confidence 4899999999999999999999999999999753 4778888777554 48899999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++ ++|+++.+.
T Consensus 78 ~~~Pt~~i~-~~g~~~~~~ 95 (111)
T cd02963 78 HSVPAIVGI-INGQVTFYH 95 (111)
T ss_pred ccCCEEEEE-ECCEEEEEe
Confidence 999999999 689887763
No 115
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.41 E-value=1.1e-12 Score=115.77 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=63.5
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+|+ ++|+|||+||++|+.++|.|.++++++.. .+.++.|++|.+.. ..+.+.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~----------------------~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKW----------------------LPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCccc----------------------HHHHHHcC
Confidence 4788 99999999999999999999999999864 37889998885421 24678999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 115 VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~~ 133 (569)
|.++|+++++|++|+++.+
T Consensus 74 V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred CCCCCEEEEECCCCCEEEE
Confidence 9999999999999998864
No 116
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=7.2e-13 Score=109.42 Aligned_cols=70 Identities=24% Similarity=0.554 Sum_probs=62.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|.++|+|+|+|||||+.+.|.+.+++.+|.+ +.++.|++|.. .++++.++|+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~-----------------------~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDEL-----------------------EEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccC-----------------------HhHHHhcCce
Confidence 69999999999999999999999999999863 67888888862 2589999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ ++|+.+.+-
T Consensus 74 ~~PTf~f~-k~g~~~~~~ 90 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEV 90 (106)
T ss_pred EeeEEEEE-ECCEEEEEE
Confidence 99999999 899988873
No 117
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.40 E-value=2.2e-12 Score=117.94 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=69.6
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHH
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~ 87 (569)
..+++| +.+++|+.++|++++|| +||.|||+||++|. ++|.|++++++|+++| ++|++|+++ .+.+.++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g-l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG-FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC-eEEEEeeccccccCCCCCHHHHH
Confidence 356888 45789999999999999 99999999999996 6999999999999886 999999986 3667889
Q ss_pred HHHH-hCCCccccc
Q 008336 88 GYFS-KMPWLAVPF 100 (569)
Q Consensus 88 ~~~~-~~~~~~~~~ 100 (569)
+|++ +++..+..+
T Consensus 81 ~f~~~~~g~~Fpv~ 94 (183)
T PRK10606 81 TYCRTTWGVTFPMF 94 (183)
T ss_pred HHHHHccCCCceeE
Confidence 9997 576655444
No 118
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.40 E-value=2.1e-12 Score=106.17 Aligned_cols=71 Identities=17% Similarity=0.392 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++++||+||++||++|+.+.|.++++++.+.+. +.++.|++|... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP-----------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH-----------------------HHHHHcCC
Confidence 4789999999999999999999999999998653 777788777654 58999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
+++|++++++ +|+++.+
T Consensus 65 ~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 65 QALPTVYLFA-AGQPVDG 81 (96)
T ss_pred CCCCEEEEEe-CCEEeee
Confidence 9999999995 8988765
No 119
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-12 Score=111.35 Aligned_cols=68 Identities=32% Similarity=0.748 Sum_probs=61.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+. |||+|||+||+||+.+.|.|+++..+|. |.+.+..|++|+.. +++..|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~------------------------ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHP------------------------ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEcccccc------------------------chHhhccee
Confidence 45 9999999999999999999999999995 46999999999775 489999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++||++++ ++|+.+.
T Consensus 115 avPtvlvf-knGe~~d 129 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVD 129 (150)
T ss_pred eeeEEEEE-ECCEEee
Confidence 99999999 7888774
No 120
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.38 E-value=2.8e-12 Score=111.05 Aligned_cols=87 Identities=26% Similarity=0.487 Sum_probs=66.0
Q ss_pred CC-CEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 356 AG-KTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 356 ~g-k~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.| |+++|+||++||++|+++.+.+. ++.+.+.+ ++.++.|++|.+.... . ++........+++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 37 89999999999999999999885 55566654 4888889888654211 1 1111123467899
Q ss_pred hcCCCCccEEEEECCC-CcEEEccc
Q 008336 432 KFKVSGIPMLVAIGPS-GRTITKEA 455 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~-G~i~~~~~ 455 (569)
.|+|.++||+++++++ |+++.+..
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~ 103 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLP 103 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEec
Confidence 9999999999999999 89988743
No 121
>PHA02278 thioredoxin-like protein
Probab=99.38 E-value=2e-12 Score=106.84 Aligned_cols=74 Identities=19% Similarity=0.408 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.+.|.+.++++++.. ++.++.|++|.+.. ....+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~--------------------d~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDV--------------------DREKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCcccc--------------------ccHHHHHHCCC
Confidence 567 99999999999999999999999887543 36789999986521 01258899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++||++++ ++|+.+.+
T Consensus 71 ~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 78888764
No 122
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.38 E-value=2.3e-12 Score=114.24 Aligned_cols=87 Identities=20% Similarity=0.413 Sum_probs=61.3
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
.|+.+++ ++ .+|+|||+||++|++++|.|+++++++ + +.|++|+.|.... ..++ ..+.. ..
T Consensus 43 ~G~~~~l----~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~-~~Vi~Vs~d~~~~------~~fp---~~~~~-~~ 104 (153)
T TIGR02738 43 QGRHANQ----DDYALVFFYQSTCPYCHQFAPVLKRFSQQF---G-LPVYAFSLDGQGL------TGFP---DPLPA-TP 104 (153)
T ss_pred cchhhhc----CCCEEEEEECCCChhHHHHHHHHHHHHHHc---C-CcEEEEEeCCCcc------cccc---cccCC-ch
Confidence 3555554 45 799999999999999999999999987 2 7799999886431 1111 11111 11
Q ss_pred HHHHHHhc---CCCCccEEEEECCCCcEEE
Q 008336 106 RDKLDELF---KVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 106 ~~~l~~~~---~v~~~P~~~lid~~G~i~~ 132 (569)
..+...| ++.++|++++||++|+++.
T Consensus 105 -~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 105 -EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred -HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 1233455 8899999999999988654
No 123
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.37 E-value=1.6e-12 Score=107.96 Aligned_cols=71 Identities=23% Similarity=0.413 Sum_probs=61.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+++++|+||++||++|+.+.|.+.++++++++. +.++.|++|..+ .+++.|+|
T Consensus 17 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v 70 (101)
T cd03003 17 SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR-----------------------MLCRSQGV 70 (101)
T ss_pred CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH-----------------------HHHHHcCC
Confidence 3689999999999999999999999999999754 788888888664 48999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
+++||++++ ++|+.+.+
T Consensus 71 ~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 71 NSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred CccCEEEEE-cCCCCccc
Confidence 999999999 78876554
No 124
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.36 E-value=3.6e-12 Score=107.08 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=57.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH-HhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD-ELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 114 (569)
.++ ++|.||||||++|+.++|.+.++++++++ .+.++.|+++.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~------------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQ------------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCh------------------------HHHHHhcC
Confidence 456 99999999999999999999999999964 4889999998664 366 5899
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
|.++||++++ ++|+.
T Consensus 82 I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 82 FFYFPVIHLY-YRSRG 96 (113)
T ss_pred CcccCEEEEE-ECCcc
Confidence 9999999999 67764
No 125
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.35 E-value=5.7e-12 Score=106.43 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=61.9
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
..|+ ++|+|||+||++|+.+.|.+.++++++... ++.++.|+++... .+++.|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~------------------------~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHER------------------------RLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccH------------------------HHHHHcC
Confidence 4678 999999999999999999999999999754 4888888888653 4889999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 115 VMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 115 v~~~P~~~lid~~G~i~~~ 133 (569)
|.++|+++++ ++|+++.+
T Consensus 77 V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 58877653
No 126
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.35 E-value=3.8e-12 Score=106.93 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=59.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH-HhcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS-RKFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~-~~~~ 434 (569)
.++++||.|||+||++|+.+.|.+.++++++++. +.++.|++|.+. .++ +.|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~-----------------------~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ-----------------------GKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh-----------------------HHHHHhcC
Confidence 3789999999999999999999999999999754 788888877654 367 5899
Q ss_pred CCCccEEEEECCCCcEEE
Q 008336 435 VSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~ 452 (569)
|+++||++++ ++|+...
T Consensus 82 I~~~PTl~lf-~~g~~~~ 98 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPI 98 (113)
T ss_pred CcccCEEEEE-ECCccce
Confidence 9999999999 6777543
No 127
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.34 E-value=5.5e-12 Score=104.84 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+|||+||++|+.++|.|.++++++++. .+.++.++.| .. .+++.|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~------------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TI------------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CH------------------------HHHHHcCC
Confidence 477 999999999999999999999999998754 3788888888 42 47899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++|+++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999998888 68887753
No 128
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.34 E-value=7.6e-12 Score=103.92 Aligned_cols=69 Identities=23% Similarity=0.395 Sum_probs=58.2
Q ss_pred CCcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 37 ~gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+|+++|+|||+||++|+.+.|.+.++++.++.. ++.+..|+++... .+++.|+|.
T Consensus 16 ~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------------------~~~~~~~i~ 70 (101)
T cd02994 16 EGEWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP------------------------GLSGRFFVT 70 (101)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH------------------------hHHHHcCCc
Confidence 455889999999999999999999999987643 4888888888653 488899999
Q ss_pred CccEEEEECCCCcEE
Q 008336 117 GIPHLVILDENGKVL 131 (569)
Q Consensus 117 ~~P~~~lid~~G~i~ 131 (569)
++||++++ ++|++.
T Consensus 71 ~~Pt~~~~-~~g~~~ 84 (101)
T cd02994 71 ALPTIYHA-KDGVFR 84 (101)
T ss_pred ccCEEEEe-CCCCEE
Confidence 99999998 788753
No 129
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.33 E-value=3.3e-12 Score=124.67 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=69.7
Q ss_pred ceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 349 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
...++++.|+++||+||++||++|+.++|.|++++++++ +.|++|++|.... ..||... .+..
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~~-~d~~ 220 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNAR-PDAG 220 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCccc-CCHH
Confidence 355677889999999999999999999999999999873 7899999997642 1244442 2345
Q ss_pred HHHhcCCCCccEEEEECCCCcEEE
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~ 452 (569)
+++.|+|.++|+++|++++|..+.
T Consensus 221 la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 221 QAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred HHHHcCCCcCCeEEEEECCCCEEE
Confidence 789999999999999999554443
No 130
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.5e-12 Score=121.89 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=69.3
Q ss_pred ceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 349 KVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 349 ~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
...+...+.+||||+||+|||++|+.++|.|+++...++++ +.++.|++|..+ .
T Consensus 35 ~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p-----------------------~ 88 (304)
T COG3118 35 QEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEP-----------------------M 88 (304)
T ss_pred HHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcch-----------------------h
Confidence 33344445679999999999999999999999999999987 999999999886 4
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
++..|||+++||+|++ ++|+.+.-.
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdgF 113 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDGF 113 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCcccc
Confidence 8999999999999999 899998863
No 131
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.33 E-value=8e-12 Score=102.74 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|+ ++|+|||+||++|+.+.|.+.++++.+.. .+.++.|+++... .+++.|+|
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQP------------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCH------------------------HHHHHcCC
Confidence 577 99999999999999999999999999864 4888888888663 48899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|++++++ +|+++.
T Consensus 65 ~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 65 QALPTVYLFA-AGQPVD 80 (96)
T ss_pred CCCCEEEEEe-CCEEee
Confidence 9999999995 887764
No 132
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.32 E-value=8.6e-12 Score=104.20 Aligned_cols=77 Identities=19% Similarity=0.423 Sum_probs=62.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.||+++|+||++||++|+.+.+.+ .++++.+.+ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCH-------------------HHHHHHHH
Confidence 379999999999999999999887 567777754 38888888765421 12468899
Q ss_pred cCCCCccEEEEECC-CCcEEEcc
Q 008336 433 FKVSGIPMLVAIGP-SGRTITKE 454 (569)
Q Consensus 433 ~~v~~~Pt~~lid~-~G~i~~~~ 454 (569)
|+++++||++++++ +|+++.+.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCccc
Confidence 99999999999998 89987764
No 133
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.32 E-value=8.5e-12 Score=111.84 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=96.9
Q ss_pred CCcccee-cCC---CCceeccc-CCCCEEEEEEe-cCCChhHHhh-hHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHHH
Q 008336 337 GDLDFVV-GKN---GGKVPVSD-LAGKTILLYFS-AHWCPPCRAF-LPKLIDAYKKIKERNESL-EVVFISSDRDQTSFD 408 (569)
Q Consensus 337 ~~~~f~~-~~~---g~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~~ 408 (569)
..|+|.+ +.+ |+.++|++ ++||+++|+|| +.||+.|..+ ++.|++.++++.+. +. .|++||.|.. ...+
T Consensus 4 ~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~--g~~~V~~iS~D~~-~~~~ 80 (155)
T cd03013 4 KLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK--GVDEVICVSVNDP-FVMK 80 (155)
T ss_pred cCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC--CCCEEEEEECCCH-HHHH
Confidence 4689987 664 99999999 58887777777 8999999999 99999999999876 67 6999999954 6788
Q ss_pred HHHhcCCC-cccccCchhhHHHHHhcCCC------C-----ccEEEEECCCCcEEEccc
Q 008336 409 EFFKGMPW-LALPFGDARKASLSRKFKVS------G-----IPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 409 ~~~~~~~~-~~~~~~~d~~~~l~~~~~v~------~-----~Pt~~lid~~G~i~~~~~ 455 (569)
+|.++++. ..+|++.|.+.++++.||+. + .++++||| +|+|++...
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEE
Confidence 89888885 48999999999999999983 1 36789999 799998753
No 134
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.32 E-value=9e-12 Score=107.78 Aligned_cols=71 Identities=10% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.|||+||+||+.+.|.|.++++++++. +.|+-|++|..+ +++..|+|+
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~-----------------------dla~~y~I~ 76 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVP-----------------------DFNTMYELY 76 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCH-----------------------HHHHHcCcc
Confidence 689999999999999999999999999999764 788899999776 599999999
Q ss_pred CccEEE-EECCCCc-EEEcc
Q 008336 437 GIPMLV-AIGPSGR-TITKE 454 (569)
Q Consensus 437 ~~Pt~~-lid~~G~-i~~~~ 454 (569)
+.|+++ ++ ++|. .+.+.
T Consensus 77 ~~~t~~~ff-k~g~~~vd~~ 95 (142)
T PLN00410 77 DPCTVMFFF-RNKHIMIDLG 95 (142)
T ss_pred CCCcEEEEE-ECCeEEEEEe
Confidence 777666 77 7887 66664
No 135
>PRK09381 trxA thioredoxin; Provisional
Probab=99.32 E-value=1.2e-11 Score=104.31 Aligned_cols=71 Identities=27% Similarity=0.578 Sum_probs=62.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|+++++++.++ +.++.+++|..+ .+++.|+|+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP-----------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh-----------------------hHHHhCCCC
Confidence 689999999999999999999999999999754 888888888664 377889999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~ 91 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATK 91 (109)
T ss_pred cCCEEEEE-eCCeEEEEe
Confidence 99999999 799988763
No 136
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.32 E-value=8.1e-12 Score=102.88 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=63.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+|+|||.|+|+||+||+.+.|.|.+++++++.. +.++.|++|..+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~-----------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP-----------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH-----------------------HHHHhcCc
Confidence 4799999999999999999999999999999643 677888888765 59999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+.+||++++ ++|+-+..+
T Consensus 67 ~amPtfvff-kngkh~~~d 84 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVD 84 (114)
T ss_pred eeCcEEEEE-ECCcEEEEe
Confidence 999999999 788877764
No 137
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.32 E-value=6.3e-12 Score=104.43 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
+++.++..-..++ ++|+|||+||++|+.+.|.+.+++++++. .+.++.|+++..+
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~---------------------- 62 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDR---------------------- 62 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccH----------------------
Confidence 3443433333568 99999999999999999999999999964 4889999998663
Q ss_pred HHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 106 RDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
.+++.|+|+++||++++ ++|+.+
T Consensus 63 --~~~~~~~v~~~Pt~~~~-~~g~~~ 85 (101)
T cd03003 63 --MLCRSQGVNSYPSLYVF-PSGMNP 85 (101)
T ss_pred --HHHHHcCCCccCEEEEE-cCCCCc
Confidence 48899999999999999 678643
No 138
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-11 Score=110.08 Aligned_cols=139 Identities=20% Similarity=0.340 Sum_probs=112.1
Q ss_pred hccCCcccee-cC-CC---CceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hh
Q 008336 334 LVSGDLDFVV-GK-NG---GKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QT 405 (569)
Q Consensus 334 ~~~~~~~f~~-~~-~g---~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~ 405 (569)
.....|+|.. .. .| .+++++++.||.++|+|| +..-+.|..++..+++.|++|+++ +++|+++|+|.. ..
T Consensus 5 Ig~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~--g~eVigvS~Ds~fsH~ 82 (194)
T COG0450 5 IGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR--GVEVIGVSTDSVFSHK 82 (194)
T ss_pred cCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc--CCEEEEEecCcHHHHH
Confidence 3455789977 33 45 399999999999999999 677888999999999999999988 799999999964 45
Q ss_pred HHHHHHhcCCC---cccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccchhhHhhcCCCCCCCC-HHHHH
Q 008336 406 SFDEFFKGMPW---LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFT-EERMK 475 (569)
Q Consensus 406 ~~~~~~~~~~~---~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~-~~~~~ 475 (569)
.|.+...+... +.||+..|.++++++.||+- ....+|||||+|+|+.... +|.+ +++++
T Consensus 83 aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v-----------~~~~iGRn~d 151 (194)
T COG0450 83 AWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILV-----------NPLTIGRNVD 151 (194)
T ss_pred HHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEE-----------ecCCCCcCHH
Confidence 66666555543 78999999999999999985 4578999999999998742 2333 67788
Q ss_pred HHHHHhhhhh
Q 008336 476 EIDGQYNEMA 485 (569)
Q Consensus 476 ~l~~~l~~l~ 485 (569)
++.+.++.+.
T Consensus 152 EilR~idAlq 161 (194)
T COG0450 152 EILRVIDALQ 161 (194)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 139
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=5.3e-12 Score=115.39 Aligned_cols=121 Identities=18% Similarity=0.311 Sum_probs=86.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|.|+|+|+|.||+||++.+|.+..++++|+. ..++-|++|.- +..+..+||.
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c-----------------------~~taa~~gV~ 73 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDEC-----------------------RGTAATNGVN 73 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHh-----------------------hchhhhcCcc
Confidence 69999999999999999999999999999964 45555555533 3477889999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCccc-----------------------c
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPENV-----------------------K 493 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~~-----------------------~ 493 (569)
++||++++ .+|+-+.+ ..+++...|++.+++.+...+... .
T Consensus 74 amPTFiff-~ng~kid~---------------~qGAd~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~glecl 137 (288)
T KOG0908|consen 74 AMPTFIFF-RNGVKIDQ---------------IQGADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLECL 137 (288)
T ss_pred cCceEEEE-ecCeEeee---------------ecCCCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhhcceee
Confidence 99999999 78887776 344555667777777654222211 1
Q ss_pred cccccceeeecc---cCeeeccCCCCCCCc
Q 008336 494 HALHEHELVLDR---CGVYSCDGCDEEGRV 520 (569)
Q Consensus 494 ~~~~~~~l~~~~---~~~~~c~~C~~~g~~ 520 (569)
....+|.|.--. ...++..+|+||+..
T Consensus 138 NqsddH~l~nalkk~~ss~lesD~DeQl~i 167 (288)
T KOG0908|consen 138 NQSDDHFLKNALKKNFSSNLESDCDEQLII 167 (288)
T ss_pred ccccccchHHHHhhccccceecccccceEE
Confidence 111166663321 226788999999865
No 140
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.30 E-value=1.6e-11 Score=108.54 Aligned_cols=74 Identities=24% Similarity=0.475 Sum_probs=63.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.++++++++.+. ++.++.|++|..+ ++++.|+|+
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~--~v~f~~VDvd~~~-----------------------~la~~~~V~ 101 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN--NLKFGKIDIGRFP-----------------------NVAEKFRVS 101 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC--CeEEEEEECCCCH-----------------------HHHHHcCce
Confidence 679999999999999999999999999998643 5889999988775 377778887
Q ss_pred C------ccEEEEECCCCcEEEccch
Q 008336 437 G------IPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 437 ~------~Pt~~lid~~G~i~~~~~~ 456 (569)
+ +||++++ ++|+.+.+..+
T Consensus 102 ~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 102 TSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred ecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 7 9999999 69999988654
No 141
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.30 E-value=7.4e-12 Score=106.41 Aligned_cols=73 Identities=25% Similarity=0.588 Sum_probs=57.1
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+|+|+|||+||++|+.+.|.+.+........ ..++.|.+|.+.+ ...+.|++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~~~~~~~ 72 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PKDEEFSP 72 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------chhhhccc
Confidence 4899999999999999999999998876654422 3566667665432 13456778
Q ss_pred CC--ccEEEEECCCCcEEEc
Q 008336 436 SG--IPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~--~Pt~~lid~~G~i~~~ 453 (569)
.+ +||++++|++|+++.+
T Consensus 73 ~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 73 DGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred CCCccceEEEECCCCCCchh
Confidence 76 9999999999999886
No 142
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.1e-11 Score=117.67 Aligned_cols=87 Identities=23% Similarity=0.534 Sum_probs=71.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+.+ |||+||||||++|+.++|.|.++..+++ |.+.++.|++|..+. ++..|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~------------------------vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPM------------------------VAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchh------------------------HHHHhCc
Confidence 455 9999999999999999999999999996 469999999998754 8999999
Q ss_pred CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (569)
+++|++|+| ++|+.+.- + ..+.+++.+.++++..
T Consensus 96 qsIPtV~af-~dGqpVdg--------F---~G~qPesqlr~~ld~~ 129 (304)
T COG3118 96 QSIPTVYAF-KDGQPVDG--------F---QGAQPESQLRQFLDKV 129 (304)
T ss_pred CcCCeEEEe-eCCcCccc--------c---CCCCcHHHHHHHHHHh
Confidence 999999999 88987752 2 2244566677766553
No 143
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.29 E-value=2.1e-11 Score=107.89 Aligned_cols=72 Identities=19% Similarity=0.406 Sum_probs=61.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+|||+||++|+.+.|.+.++++++... ++.++.|++|..++ +++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~------------------------la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPN------------------------VAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHH------------------------HHHHcCc
Confidence 467 999999999999999999999999998654 49999999997754 6777777
Q ss_pred CC------ccEEEEECCCCcEEEcC
Q 008336 116 MG------IPHLVILDENGKVLSDG 134 (569)
Q Consensus 116 ~~------~P~~~lid~~G~i~~~~ 134 (569)
.+ +||++++ ++|+.+.+.
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~ 124 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARR 124 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEE
Confidence 76 9999999 688887654
No 144
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.29 E-value=1.4e-11 Score=103.01 Aligned_cols=71 Identities=24% Similarity=0.481 Sum_probs=60.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|.||++||++|+.+.|.++++++++.+. +.++.|+++..+ ++++.|+|+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE-----------------------SLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH-----------------------HHHHHcCCC
Confidence 679999999999999999999999999998643 778888777554 588999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++||++++..+|+.+.+
T Consensus 73 ~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 73 AYPTIRLYPGNASKYHS 89 (104)
T ss_pred cccEEEEEcCCCCCceE
Confidence 99999999665466655
No 145
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.28 E-value=4e-11 Score=100.13 Aligned_cols=69 Identities=28% Similarity=0.500 Sum_probs=56.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
+++ ++|+|||+||++|+.++|.|.+++++++..+ .+.+..++++... .+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS------------------------SIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH------------------------hHHhhcC
Confidence 456 9999999999999999999999999997543 4777777776542 4788999
Q ss_pred CCCccEEEEECCCCcE
Q 008336 115 VMGIPHLVILDENGKV 130 (569)
Q Consensus 115 v~~~P~~~lid~~G~i 130 (569)
|.++|+++++ ++|..
T Consensus 70 I~~~Pt~~l~-~~~~~ 84 (104)
T cd03000 70 VRGYPTIKLL-KGDLA 84 (104)
T ss_pred CccccEEEEE-cCCCc
Confidence 9999999999 44533
No 146
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.27 E-value=2.8e-11 Score=100.47 Aligned_cols=68 Identities=22% Similarity=0.503 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+|+ ++|+|||+||++|+.+.|.|.++++.++.. ++.+..|+++..+ .+++.|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~~~~~-----------------------~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDL--GINVAKVDVTQEP-----------------------GLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccC--CeEEEEEEccCCH-----------------------hHHHHcCC
Confidence 355 689999999999999999999999876532 4777777776554 47889999
Q ss_pred CCccEEEEECCCCcE
Q 008336 436 SGIPMLVAIGPSGRT 450 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i 450 (569)
+++||++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999998 78885
No 147
>PRK10996 thioredoxin 2; Provisional
Probab=99.27 E-value=3.9e-11 Score=105.54 Aligned_cols=71 Identities=24% Similarity=0.600 Sum_probs=61.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+|+++|+||++||++|+.+.|.|.++++++.++ +.++.|+++..+ .+++.|+|+
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------------~l~~~~~V~ 105 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER-----------------------ELSARFRIR 105 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH-----------------------HHHHhcCCC
Confidence 789999999999999999999999999888653 777777776554 588999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 106 ~~Ptlii~-~~G~~v~~~ 122 (139)
T PRK10996 106 SIPTIMIF-KNGQVVDML 122 (139)
T ss_pred ccCEEEEE-ECCEEEEEE
Confidence 99999999 589998873
No 148
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.1e-11 Score=102.33 Aligned_cols=68 Identities=26% Similarity=0.599 Sum_probs=59.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| ++|+|+|+|||||+.+.|.+.+++.+|. ++.++.|++|+. ..+++.++|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~------------------------~~~~~~~~V 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDEL------------------------EEVAKEFNV 72 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccC------------------------HhHHHhcCc
Confidence 468 9999999999999999999999999997 378999999973 358999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++||++++ ++|+.+.
T Consensus 73 ~~~PTf~f~-k~g~~~~ 88 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVD 88 (106)
T ss_pred eEeeEEEEE-ECCEEEE
Confidence 999999999 7787665
No 149
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.27 E-value=2.5e-11 Score=108.78 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=91.5
Q ss_pred ccCccCCcee-cCC---CceeecCC-CCCc-EEEEE-ecCCCHhhHhh-HHHHHHHHHHhcCCCCE-EEEEEeCCCCHHH
Q 008336 15 LSSSARDFLI-RSN---GDQVKLDS-LKGK-IGLYF-SASWCGPCQRF-TPILAEVYNELSRQGDF-EVIFVSGDEDDEA 85 (569)
Q Consensus 15 ~g~~~pdf~~-~~~---g~~v~l~~-~~gk-vlv~F-~a~wC~~C~~~-~p~l~~~~~~~~~~g~~-~vv~v~~d~~~~~ 85 (569)
+|+.+|+|.+ +.+ |+.++|++ ++|| ++|+| ++.|||.|..+ ++.|++.+++|.+.| . .|++|+.| +...
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D-~~~~ 78 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVN-DPFV 78 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECC-CHHH
Confidence 5899999954 443 99999999 5888 55555 59999999999 999999999999886 7 69999999 5567
Q ss_pred HHHHHHhCCC--cccccCCchhHHHHHHhcCCC------C-----ccEEEEECCCCcEEEc
Q 008336 86 FKGYFSKMPW--LAVPFSDSETRDKLDELFKVM------G-----IPHLVILDENGKVLSD 133 (569)
Q Consensus 86 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~i~~~ 133 (569)
.++|.++.+. .+..++|.+ ..+++.||+. + .+.++||| +|+|++.
T Consensus 79 ~~~~~~~~~~~~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 79 MKAWGKALGAKDKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred HHHHHHhhCCCCcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 8889998887 444556654 5799999983 1 36779998 6999874
No 150
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.27 E-value=6.2e-11 Score=98.98 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=56.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|.||++||++|+++.|.|.+++++++.....+.+..++++..+ .+++.|+|+
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~I~ 71 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-----------------------SIASEFGVR 71 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-----------------------hHHhhcCCc
Confidence 579999999999999999999999999999754334666666665433 478899999
Q ss_pred CccEEEEECCCCcE
Q 008336 437 GIPMLVAIGPSGRT 450 (569)
Q Consensus 437 ~~Pt~~lid~~G~i 450 (569)
++||+++++ +|.+
T Consensus 72 ~~Pt~~l~~-~~~~ 84 (104)
T cd03000 72 GYPTIKLLK-GDLA 84 (104)
T ss_pred cccEEEEEc-CCCc
Confidence 999999994 4543
No 151
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.26 E-value=3.1e-11 Score=101.59 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=59.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+++++|+|||+||++|+++.|.+.++++.+++.. ..+.++.|++|... .+++.|
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-----------------------~l~~~~ 74 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-----------------------DIADRY 74 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-----------------------HHHHhC
Confidence 6899999999999999999999999999886432 13666677777554 589999
Q ss_pred CCCCccEEEEECCCCcEE
Q 008336 434 KVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~ 451 (569)
+|+++||++++ ++|++.
T Consensus 75 ~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 75 RINKYPTLKLF-RNGMMM 91 (108)
T ss_pred CCCcCCEEEEE-eCCcCc
Confidence 99999999999 788843
No 152
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.25 E-value=1.7e-11 Score=103.19 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCC----CCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ----GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~----g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
.++ ++|+|||+||++|+++.|.+.++++.+++. +.+.++.|++|... .+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------------------------~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------------------------DIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------------------------HHHH
Confidence 357 999999999999999999999999887532 24888888888663 4899
Q ss_pred hcCCCCccEEEEECCCCcE
Q 008336 112 LFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i 130 (569)
.|+|+++|+++++ ++|++
T Consensus 73 ~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred hCCCCcCCEEEEE-eCCcC
Confidence 9999999999999 77874
No 153
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.25 E-value=6e-11 Score=108.49 Aligned_cols=117 Identities=26% Similarity=0.473 Sum_probs=93.9
Q ss_pred CCcccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---ChhHHHHHH
Q 008336 337 GDLDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQTSFDEFF 411 (569)
Q Consensus 337 ~~~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~~~~~~~~ 411 (569)
..++|.+ |.+|+.+++++++||++||+|..+.||. |...+..|.++.+++.++..++++++||+|. +++.+++|.
T Consensus 31 ~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 31 IVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp SSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred cCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 3578988 9999999999999999999999999985 9999999999999998765689999999984 577899999
Q ss_pred hcCC--CcccccCchhhHHHHHhcCCC----------------CccEEEEECCCCcEEEc
Q 008336 412 KGMP--WLALPFGDARKASLSRKFKVS----------------GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 412 ~~~~--~~~~~~~~d~~~~l~~~~~v~----------------~~Pt~~lid~~G~i~~~ 453 (569)
+.++ |..+....+...++++.|++. ....++||||+|+++..
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 8764 555555455566788888754 23478999999999876
No 154
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.24 E-value=3e-11 Score=102.38 Aligned_cols=96 Identities=19% Similarity=0.433 Sum_probs=66.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.||+++|+||++||++|+++.+.+.+..+-...-..++.++.++++........+.+..+. +.......++++.|+|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 4899999999999999999999988644422111124888999888765544455443321 2223345579999999
Q ss_pred CCccEEEEECCCCcEEEcc
Q 008336 436 SGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~ 454 (569)
+++||++++|++|+++.+.
T Consensus 81 ~gtPt~~~~d~~G~~v~~~ 99 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRI 99 (112)
T ss_dssp -SSSEEEECTTTSCEEEEE
T ss_pred CccCEEEEEcCCCCEEEEe
Confidence 9999999999999998763
No 155
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.24 E-value=5.4e-11 Score=98.86 Aligned_cols=71 Identities=25% Similarity=0.518 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+||++||++|+.+.|.+.++++.+...+++.++.++++... .+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK------------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH------------------------HHHHhCCC
Confidence 678 99999999999999999999999999976545888888777553 58899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
+++|+++++++++.+.
T Consensus 68 ~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 68 SGFPTIKFFPKGKKPV 83 (102)
T ss_pred CcCCEEEEecCCCcce
Confidence 9999999998776543
No 156
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.24 E-value=3.9e-11 Score=98.83 Aligned_cols=71 Identities=23% Similarity=0.450 Sum_probs=59.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+++.|.|.++++++.. .+.++.++.+.. .++++.|+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999988732 366666655433 2588999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||++++ .+|+++.+.
T Consensus 68 ~~Pt~~~~-~~g~~~~~~ 84 (97)
T cd02984 68 AVPTFVFF-RNGTIVDRV 84 (97)
T ss_pred cccEEEEE-ECCEEEEEE
Confidence 99999999 589988774
No 157
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.24 E-value=4.3e-11 Score=100.82 Aligned_cols=73 Identities=18% Similarity=0.436 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH-hcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~ 434 (569)
+||+++|.||++||++|+++.|.|.++++.+++. ++.++.|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccc----------------------hhhHHhhcC
Confidence 3789999999999999999999999999999753 5888888887632 13565 599
Q ss_pred CCCccEEEEECCCCcEEE
Q 008336 435 VSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~ 452 (569)
|+++||+++++++++...
T Consensus 76 v~~~Pti~~f~~~~~~~~ 93 (109)
T cd02993 76 LKSFPTILFFPKNSRQPI 93 (109)
T ss_pred CCcCCEEEEEcCCCCCce
Confidence 999999999987765443
No 158
>PTZ00062 glutaredoxin; Provisional
Probab=99.24 E-value=8.8e-11 Score=108.71 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred CcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 38 gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
|+++++|||+||++|+.+.|.+.++++++. ++.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------------------------------cCccc
Confidence 349999999999999999999999999985 3666665432 89999
Q ss_pred ccEEEEECCCCcEEEc
Q 008336 118 IPHLVILDENGKVLSD 133 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~ 133 (569)
+|+++++ ++|+.+.+
T Consensus 63 vPtfv~~-~~g~~i~r 77 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS 77 (204)
T ss_pred ceEEEEE-ECCEEEee
Confidence 9999999 78888764
No 159
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.23 E-value=3.8e-11 Score=101.59 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=59.7
Q ss_pred CCEEEEEEecCCChh--HH--hhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSAHWCPP--CR--AFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
..++|++||++||+| |+ .+.|.+.+++.++-.. .++.|+.|++|.++ ++++.
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~-----------------------~La~~ 82 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDA-----------------------KVAKK 82 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCH-----------------------HHHHH
Confidence 469999999999987 99 7888898888887221 14888888888775 59999
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 433 FKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~ 452 (569)
|+|+++||++++ ++|+++.
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE 101 (120)
T ss_pred cCCccccEEEEE-ECCEEEE
Confidence 999999999999 7999776
No 160
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.23 E-value=4.6e-11 Score=100.69 Aligned_cols=69 Identities=29% Similarity=0.585 Sum_probs=59.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++.+.+. +.++.|++|.+. ...+++.|+|+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i~ 73 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGVQ 73 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCCC
Confidence 789999999999999999999999999998654 788888888632 13588999999
Q ss_pred CccEEEEECCCCc
Q 008336 437 GIPMLVAIGPSGR 449 (569)
Q Consensus 437 ~~Pt~~lid~~G~ 449 (569)
++||++++++++.
T Consensus 74 ~~Pt~~~~~~~~~ 86 (109)
T cd03002 74 GFPTLKVFRPPKK 86 (109)
T ss_pred cCCEEEEEeCCCc
Confidence 9999999977763
No 161
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.23 E-value=5.7e-11 Score=99.21 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=58.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|.|||+||++|+.+.|.+.++++++.. .+.++.|+++... .+++.|+|
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYE------------------------SLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchH------------------------HHHHHcCC
Confidence 466 99999999999999999999999999853 4888899888653 48899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
.++|+++++..+|+.+
T Consensus 72 ~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 72 RAYPTIRLYPGNASKY 87 (104)
T ss_pred CcccEEEEEcCCCCCc
Confidence 9999999996653443
No 162
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.23 E-value=3.6e-11 Score=99.25 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=64.4
Q ss_pred CCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
|.+++|.||++| ||+|+.+.|.|.++++++.++ +.++.|++|..+ +++..|+
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~-----------------------~la~~f~ 80 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ-----------------------ALAARFG 80 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH-----------------------HHHHHcC
Confidence 678999999997 999999999999999999765 788888888775 5899999
Q ss_pred CCCccEEEEECCCCcEEEccc
Q 008336 435 VSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~~~ 455 (569)
|+++||++++ ++|+++.+..
T Consensus 81 V~sIPTli~f-kdGk~v~~~~ 100 (111)
T cd02965 81 VLRTPALLFF-RDGRYVGVLA 100 (111)
T ss_pred CCcCCEEEEE-ECCEEEEEEe
Confidence 9999999999 8999998743
No 163
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.22 E-value=5.8e-11 Score=97.86 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.+| |+|.|+|+|||+|+.+.|.|.++++++++. +.++.|++|+.+ ++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~------------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVP------------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccH------------------------HHHHhcCc
Confidence 578 999999999999999999999999999632 789999999774 48999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.+.|+++++ ++|+-+.
T Consensus 67 ~amPtfvff-kngkh~~ 82 (114)
T cd02986 67 SYIPSTIFF-FNGQHMK 82 (114)
T ss_pred eeCcEEEEE-ECCcEEE
Confidence 999999988 6776655
No 164
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.22 E-value=4.3e-11 Score=99.50 Aligned_cols=71 Identities=25% Similarity=0.557 Sum_probs=58.9
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
+++|+||++||++|+.+.|.+.++++++++....+.++.|+.+... .+++.|+|.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----------------------ELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----------------------hhHhhcCCCcC
Confidence 5999999999999999999999999999762234777777766543 47889999999
Q ss_pred cEEEEECCCCcEEEc
Q 008336 439 PMLVAIGPSGRTITK 453 (569)
Q Consensus 439 Pt~~lid~~G~i~~~ 453 (569)
||++++ ++|+.+.+
T Consensus 75 Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 75 PTLLLF-KDGEKVDK 88 (102)
T ss_pred CEEEEE-eCCCeeeE
Confidence 999999 67877655
No 165
>PRK09381 trxA thioredoxin; Provisional
Probab=99.21 E-value=1.1e-10 Score=98.44 Aligned_cols=68 Identities=32% Similarity=0.657 Sum_probs=59.9
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++.. .+.++.++++... .+.+.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCCh------------------------hHHHhCCCC
Confidence 56 99999999999999999999999999874 4889999998663 377889999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++|+++++ ++|+++.
T Consensus 75 ~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 75 GIPTLLLF-KNGEVAA 89 (109)
T ss_pred cCCEEEEE-eCCeEEE
Confidence 99999999 6888775
No 166
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.21 E-value=7.4e-11 Score=98.18 Aligned_cols=70 Identities=30% Similarity=0.770 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++++ ++.++.|+.+..+ .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~-----------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENK-----------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSH-----------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccc-----------------------hhhhccCCC
Confidence 68999999999999999999999999999976 4888888887664 589999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|+++++ .+|+.+.+
T Consensus 71 ~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp SSSEEEEE-ETTEEEEE
T ss_pred CCCEEEEE-ECCcEEEE
Confidence 99999999 67777765
No 167
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.21 E-value=8.1e-11 Score=99.13 Aligned_cols=69 Identities=16% Similarity=0.425 Sum_probs=57.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH-hcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 114 (569)
+|+ ++|.||++||++|+++.|.+.++++.++.. ++.++.|++|.+.. .++. .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~-----------------------~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQR-----------------------EFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccch-----------------------hhHHhhcC
Confidence 578 999999999999999999999999999854 48899999886311 3554 599
Q ss_pred CCCccEEEEECCCCc
Q 008336 115 VMGIPHLVILDENGK 129 (569)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (569)
++++||+++++++++
T Consensus 76 v~~~Pti~~f~~~~~ 90 (109)
T cd02993 76 LKSFPTILFFPKNSR 90 (109)
T ss_pred CCcCCEEEEEcCCCC
Confidence 999999999977654
No 168
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.20 E-value=5.5e-11 Score=99.30 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.|+ +||+||++||++|+.+.|.+ .++.+.+.+ ++.++.|+++.+.. ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~--------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP--------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH--------------------HHHHHHHH
Confidence 578 99999999999999999988 577777764 48888988875422 11368899
Q ss_pred cCCCCccEEEEECC-CCcEEE
Q 008336 113 FKVMGIPHLVILDE-NGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~-~G~i~~ 132 (569)
|++.++|+++++++ +|+++.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~ 88 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPL 88 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCc
Confidence 99999999999987 787654
No 169
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.20 E-value=8.6e-11 Score=99.34 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=62.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|+|+||++||++|+.+.|.|.+++++++ ++.++-|+++..+ .+++.|+|.
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~----~i~f~~Vd~~~~~-----------------------~l~~~~~v~ 74 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHL----ETKFIKVNAEKAP-----------------------FLVEKLNIK 74 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcC----CCEEEEEEcccCH-----------------------HHHHHCCCc
Confidence 5799999999999999999999999998875 3688888887665 489999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||++++ ++|+.+.+..
T Consensus 75 ~vPt~l~f-k~G~~v~~~~ 92 (113)
T cd02989 75 VLPTVILF-KNGKTVDRIV 92 (113)
T ss_pred cCCEEEEE-ECCEEEEEEE
Confidence 99999999 7999988743
No 170
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.20 E-value=6.2e-11 Score=99.92 Aligned_cols=69 Identities=30% Similarity=0.496 Sum_probs=58.9
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.|+ ++|+|||+||++|+++.|.+.++++.+.. .+.++.|+++.+.. ..+++.|+|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~----------------------~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKN----------------------KPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCcccc----------------------HHHHHHcCC
Confidence 477 99999999999999999999999999864 48889999886321 358899999
Q ss_pred CCccEEEEECCCCc
Q 008336 116 MGIPHLVILDENGK 129 (569)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (569)
.++|+++++++++.
T Consensus 73 ~~~Pt~~~~~~~~~ 86 (109)
T cd03002 73 QGFPTLKVFRPPKK 86 (109)
T ss_pred CcCCEEEEEeCCCc
Confidence 99999999977663
No 171
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.20 E-value=6.1e-11 Score=100.33 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=57.3
Q ss_pred EEEEEecCCCHh--hH--hhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 40 IGLYFSASWCGP--CQ--RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 40 vlv~F~a~wC~~--C~--~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+|++|||+||++ |+ .+.|.+.+++.++-..+++.++.|++|.++ .+++.|+|
T Consensus 30 vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~------------------------~La~~~~I 85 (120)
T cd03065 30 CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA------------------------KVAKKLGL 85 (120)
T ss_pred EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH------------------------HHHHHcCC
Confidence 888899999976 99 778888888887732335999999999774 49999999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
+++||++++ ++|+++..
T Consensus 86 ~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 86 DEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred ccccEEEEE-ECCEEEEe
Confidence 999999999 68987643
No 172
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.20 E-value=1.2e-10 Score=109.71 Aligned_cols=71 Identities=25% Similarity=0.533 Sum_probs=59.6
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++..+ .+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~~-----------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRAL-----------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcccH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999998753 666666655443 589999999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++||+++++ +|+++...
T Consensus 106 ~~PTl~~f~-~G~~v~~~ 122 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQYE 122 (224)
T ss_pred cCCEEEEEE-CCEEEEee
Confidence 999999995 78877653
No 173
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.20 E-value=6.2e-11 Score=98.56 Aligned_cols=67 Identities=24% Similarity=0.562 Sum_probs=57.2
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCC-CCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
++|+|||+||++|+.++|.+.+++++++.. ..+.++.|+++... .+++.|+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~v~~~ 74 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR------------------------ELCSEFQVRGY 74 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh------------------------hhHhhcCCCcC
Confidence 999999999999999999999999999752 25888888887553 48889999999
Q ss_pred cEEEEECCCCcEE
Q 008336 119 PHLVILDENGKVL 131 (569)
Q Consensus 119 P~~~lid~~G~i~ 131 (569)
|+++++ ++|+.+
T Consensus 75 Pt~~~~-~~g~~~ 86 (102)
T cd03005 75 PTLLLF-KDGEKV 86 (102)
T ss_pred CEEEEE-eCCCee
Confidence 999999 677654
No 174
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.19 E-value=5.9e-11 Score=100.62 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=60.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|+++++++. ++.++.|+++.. .+++.|+|+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~----~v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP----ETKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC----CcEEEEEEchhh------------------------HHHHhcCCC
Confidence 5899999999999999999999999999875 356676666533 378999999
Q ss_pred CccEEEEECCCCcEEEccch
Q 008336 437 GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~ 456 (569)
++||++++ ++|+.+.+..+
T Consensus 76 ~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 76 VLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred cCCEEEEE-ECCEEEEEEec
Confidence 99999999 78999887543
No 175
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.19 E-value=1.3e-10 Score=100.62 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=62.8
Q ss_pred CCC-c-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 36 LKG-K-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 36 ~~g-k-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
-.| | ++|+|||+||++|+.+.|.+. .+.+.+.+ ++.++.|+++.+.... .| .. . ......++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~-~~-~~--------~-~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVT-DF-DG--------E-ALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceee-cc-CC--------C-CccHHHHH
Confidence 367 8 999999999999999999885 56556653 4889999988654311 11 00 0 01234788
Q ss_pred HhcCCCCccEEEEECCC-CcEEEc
Q 008336 111 ELFKVMGIPHLVILDEN-GKVLSD 133 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~-G~i~~~ 133 (569)
..|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999998 788763
No 176
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.19 E-value=1.6e-10 Score=95.10 Aligned_cols=71 Identities=21% Similarity=0.414 Sum_probs=61.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++++.++ +.++.|+.|..+ ++++.++|.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~-----------------------~l~~~~~v~ 66 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ-----------------------EIAEAAGIM 66 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH-----------------------HHHHHCCCe
Confidence 789999999999999999999999999888643 788888877654 478899999
Q ss_pred CccEEEEECCCCcEEEcc
Q 008336 437 GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~ 454 (569)
++|+++++ ++|+++.+.
T Consensus 67 ~vPt~~i~-~~g~~v~~~ 83 (97)
T cd02949 67 GTPTVQFF-KDKELVKEI 83 (97)
T ss_pred eccEEEEE-ECCeEEEEE
Confidence 99999999 589988763
No 177
>PRK10996 thioredoxin 2; Provisional
Probab=99.17 E-value=2.8e-10 Score=100.10 Aligned_cols=70 Identities=31% Similarity=0.701 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAER------------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCH------------------------HHHHhcCC
Confidence 478 99999999999999999999999998764 4888888887653 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+++..
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999988 58987753
No 178
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.17 E-value=3.9e-10 Score=105.57 Aligned_cols=71 Identities=24% Similarity=0.464 Sum_probs=56.7
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
++|.||||||+||+++.|.+.+.--++++.| .+.|-.+++..- ..++..|+|+++
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f------------------------~aiAnefgiqGY 101 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF------------------------PAIANEFGIQGY 101 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc------------------------hhhHhhhccCCC
Confidence 9999999999999999999999999998877 344444333322 358899999999
Q ss_pred cEEEEECCCCcEEEcCC
Q 008336 119 PHLVILDENGKVLSDGG 135 (569)
Q Consensus 119 P~~~lid~~G~i~~~~~ 135 (569)
||+.++ ++|-.+.+.|
T Consensus 102 PTIk~~-kgd~a~dYRG 117 (468)
T KOG4277|consen 102 PTIKFF-KGDHAIDYRG 117 (468)
T ss_pred ceEEEe-cCCeeeecCC
Confidence 999999 6676665544
No 179
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.17 E-value=1.3e-10 Score=96.50 Aligned_cols=70 Identities=23% Similarity=0.520 Sum_probs=58.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++++++|.||++||++|+.+.+.|+++++.++.. .++.++.++++..+ .+++.|+|
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~-----------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEK-----------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchH-----------------------HHHHhCCC
Confidence 4899999999999999999999999999998753 13666666665443 58899999
Q ss_pred CCccEEEEECCCCc
Q 008336 436 SGIPMLVAIGPSGR 449 (569)
Q Consensus 436 ~~~Pt~~lid~~G~ 449 (569)
+++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999987776
No 180
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.16 E-value=3.5e-10 Score=96.47 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+|+|+|+|+++||++|+.+.+.. .++.+.+.. ++.+|.|+.+..++..+.+.+ .+...
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~---------------~~~~~ 75 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMN---------------AAQAM 75 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHH---------------HHHHh
Confidence 489999999999999999998742 244555433 377777766655432211111 12336
Q ss_pred cCCCCccEEEEECCCCcEEEccc
Q 008336 433 FKVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
|++.++|+++++|++|++++..+
T Consensus 76 ~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 76 TGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred cCCCCCCEEEEECCCCCEEeeee
Confidence 79999999999999999998853
No 181
>PTZ00062 glutaredoxin; Provisional
Probab=99.16 E-value=7.9e-11 Score=109.03 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=78.5
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 437 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 437 (569)
..++++|||+||++|+.+.|.|.++.++++ ++.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d-------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA-------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc-------------------------------cCccc
Confidence 568999999999999999999999999885 2555555321 89999
Q ss_pred ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCCcc-----cccccccceeeecccCeeecc
Q 008336 438 IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWPEN-----VKHALHEHELVLDRCGVYSCD 512 (569)
Q Consensus 438 ~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~c~ 512 (569)
+|+++++ ++|+++.+ +.+.+..+|...+.......+.. ++..-.+|++++.+++...|+
T Consensus 63 vPtfv~~-~~g~~i~r---------------~~G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p 126 (204)
T PTZ00062 63 YGVFEFY-QNSQLINS---------------LEGCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFP 126 (204)
T ss_pred ceEEEEE-ECCEEEee---------------eeCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 9999999 79999998 33444566666666665543322 222333899999999876555
Q ss_pred CCC
Q 008336 513 GCD 515 (569)
Q Consensus 513 ~C~ 515 (569)
.|.
T Consensus 127 ~C~ 129 (204)
T PTZ00062 127 FCR 129 (204)
T ss_pred CCh
Confidence 554
No 182
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.16 E-value=1.1e-10 Score=97.52 Aligned_cols=73 Identities=32% Similarity=0.621 Sum_probs=59.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|+|||+||++|+.+.|.+.++++.+...+.+.++.++++.+.. ..+++.|+|
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----------------------~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH----------------------DALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc----------------------HHHHHhCCC
Confidence 467 999999999999999999999999999754457777788775211 358899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
+++|+++++ ++|+++.
T Consensus 74 ~~~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYF-ENGKFVE 89 (104)
T ss_pred ccccEEEEE-eCCCeeE
Confidence 999998888 5777543
No 183
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.16 E-value=3.6e-10 Score=93.97 Aligned_cols=84 Identities=32% Similarity=0.653 Sum_probs=67.9
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++.. ++.++.|+++... .+++.|+|.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENK------------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSH------------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccc------------------------hhhhccCCC
Confidence 57 99999999999999999999999999876 5899999998663 489999999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
++|+++++ ++|+...+ -.| +.+.+.|.++++
T Consensus 71 ~~Pt~~~~-~~g~~~~~-------~~g----~~~~~~l~~~i~ 101 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKR-------YNG----PRNAESLIEFIE 101 (103)
T ss_dssp SSSEEEEE-ETTEEEEE-------EES----SSSHHHHHHHHH
T ss_pred CCCEEEEE-ECCcEEEE-------EEC----CCCHHHHHHHHH
Confidence 99999999 56666541 111 346666766654
No 184
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.16 E-value=4.8e-10 Score=94.74 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++... .+++.|+|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~------------------------~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAP------------------------FLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCH------------------------HHHHHCCC
Confidence 346 9999999999999999999999999875 3789999988764 48899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+.+.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 68888764
No 185
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.15 E-value=2.3e-10 Score=96.99 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=57.8
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++. ++.++.|+++.. .+++.|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-------------------------HHHHhcCCC
Confidence 57 9999999999999999999999999985 367788877743 378899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 117 GIPHLVILDENGKVLSD 133 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~ 133 (569)
++|+++++ ++|+.+.+
T Consensus 76 ~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVY-KNGELIDN 91 (113)
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 78888764
No 186
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.14 E-value=1.3e-10 Score=97.94 Aligned_cols=79 Identities=22% Similarity=0.461 Sum_probs=63.2
Q ss_pred CCCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 356 AGKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 356 ~gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
+|++|+|+||| +||++|+.+.|.|.++.++++++ +.++.|.+|..+ ...+...+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 47899999999 99999999999999999998743 788888887643 11122356
Q ss_pred HHHhcCCC-CccEEEEECCCCcEEEc
Q 008336 429 LSRKFKVS-GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 429 l~~~~~v~-~~Pt~~lid~~G~i~~~ 453 (569)
+...|+|. ++||+++++..++++..
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecch
Confidence 88999998 99999999766666554
No 187
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.14 E-value=6.3e-11 Score=115.74 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=68.9
Q ss_pred CCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 27 ~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
..+...+++++|+ +||+|||+||++|+.++|.|.+++++++ +.|++|++|..... .++....+
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~-----------~fp~~~~d- 218 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLP-----------GFPNARPD- 218 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccc-----------cCCcccCC-
Confidence 3445788999999 9999999999999999999999999873 88999999875321 11211222
Q ss_pred HHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 106 RDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
..+.+.|+|.++|+++|+|++|..+
T Consensus 219 -~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 219 -AGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred -HHHHHHcCCCcCCeEEEEECCCCEE
Confidence 3578999999999999999855433
No 188
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.13 E-value=1.6e-10 Score=98.03 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=57.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
++ ++|+|||+||++|+.+.|.+.++++++++.. .+.+..|+++.+.. ..+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~----------------------~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN----------------------VALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh----------------------HHHHHhCCC
Confidence 46 9999999999999999999999999986532 47777777654322 358899999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
+++|+++++. +|....
T Consensus 77 ~~~Pt~~lf~-~~~~~~ 92 (114)
T cd02992 77 TGYPTLRYFP-PFSKEA 92 (114)
T ss_pred CCCCEEEEEC-CCCccC
Confidence 9999999994 454443
No 189
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.13 E-value=2.4e-10 Score=98.99 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=57.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ |+|.|||+||++|+.+.|.|.++++++++ .+.|+.|++|..+ .++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~------------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVP------------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCH------------------------HHHHHcCc
Confidence 567 99999999999999999999999999864 3788999999875 48999999
Q ss_pred CCccEEEEECCCCcE
Q 008336 116 MGIPHLVILDENGKV 130 (569)
Q Consensus 116 ~~~P~~~lid~~G~i 130 (569)
++.|+++++=++|++
T Consensus 76 ~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 76 YDPCTVMFFFRNKHI 90 (142)
T ss_pred cCCCcEEEEEECCeE
Confidence 988777744378873
No 190
>PTZ00051 thioredoxin; Provisional
Probab=99.13 E-value=2.3e-10 Score=94.43 Aligned_cols=71 Identities=18% Similarity=0.449 Sum_probs=59.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.++++++. ++.++.|+.+... .+++.|+++
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~-----------------------~~~~~~~v~ 70 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELS-----------------------EVAEKENIT 70 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchH-----------------------HHHHHCCCc
Confidence 6899999999999999999999999888764 3667777665433 588999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
++||++++ ++|+++.+..
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~ 88 (98)
T PTZ00051 71 SMPTFKVF-KNGSVVDTLL 88 (98)
T ss_pred eeeEEEEE-eCCeEEEEEe
Confidence 99999888 7999988743
No 191
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.13 E-value=4.3e-10 Score=105.98 Aligned_cols=68 Identities=24% Similarity=0.505 Sum_probs=58.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+|||+||++|+.+.|.+.+++++++. .+.+..|+++... .+++.|+|+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~------------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRAL------------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccH------------------------HHHHHcCCC
Confidence 56 99999999999999999999999999874 4777777776542 588999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++||+++++ +|+++.
T Consensus 106 ~~PTl~~f~-~G~~v~ 120 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQ 120 (224)
T ss_pred cCCEEEEEE-CCEEEE
Confidence 999999996 787654
No 192
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.13 E-value=3.2e-10 Score=96.13 Aligned_cols=74 Identities=24% Similarity=0.462 Sum_probs=57.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++++++..+.+.+..++++.+. ...+++.|+|+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 479999999999999999999999999998754233666666654332 23588999999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 437 GIPMLVAIGPSGRTIT 452 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~ 452 (569)
++||++++. +|....
T Consensus 78 ~~Pt~~lf~-~~~~~~ 92 (114)
T cd02992 78 GYPTLRYFP-PFSKEA 92 (114)
T ss_pred CCCEEEEEC-CCCccC
Confidence 999999994 555433
No 193
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.12 E-value=1.1e-10 Score=99.30 Aligned_cols=77 Identities=31% Similarity=0.586 Sum_probs=57.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
..+..++| +||+|||+||++|+.+.|.+.+........ ..++.|++|.+.+ ...
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~--~~fv~v~vd~~~~-----------------------~~~ 67 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS--HNFVMVNLEDDEE-----------------------PKD 67 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc--CcEEEEEecCCCC-----------------------chh
Confidence 44555788 999999999999999999999976654322 3455666664422 234
Q ss_pred HhcCCCC--ccEEEEECCCCcEEEc
Q 008336 111 ELFKVMG--IPHLVILDENGKVLSD 133 (569)
Q Consensus 111 ~~~~v~~--~P~~~lid~~G~i~~~ 133 (569)
..|++.+ +|+++++|++|+++.+
T Consensus 68 ~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 68 EEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred hhcccCCCccceEEEECCCCCCchh
Confidence 5677775 9999999999998763
No 194
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.12 E-value=2.8e-10 Score=93.97 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=61.4
Q ss_pred CCc-EEEEEecCC--CHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 37 ~gk-vlv~F~a~w--C~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
.|. ++|.|||+| ||+|+.+.|.|.++++++.+ .+.++.|++|..+ .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~------------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQ------------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCH------------------------HHHHHc
Confidence 345 999999997 99999999999999999874 3788899999774 499999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 114 KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~ 133 (569)
+|+++||++++ ++|+++..
T Consensus 80 ~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEE
Confidence 99999999999 78988864
No 195
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.12 E-value=4.5e-10 Score=93.02 Aligned_cols=70 Identities=26% Similarity=0.627 Sum_probs=60.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.+.|.++.+++.++ +.++.++.+.+. .+++.|+|.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP-----------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH-----------------------HHHHHcCCC
Confidence 579999999999999999999999999888643 888888877654 478899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|+++++ ++|+++.+
T Consensus 68 ~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDR 83 (101)
T ss_pred cCCEEEEE-eCCcEeee
Confidence 99999999 78887765
No 196
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.12 E-value=3.1e-10 Score=94.66 Aligned_cols=74 Identities=23% Similarity=0.536 Sum_probs=58.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.++++++.++.. ..+.++.++++... ...+++.|+|+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---------------------~~~~~~~~~i~ 74 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPE---------------------HDALKEEYNVK 74 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCc---------------------cHHHHHhCCCc
Confidence 679999999999999999999999999998742 23566666665421 23588999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++||++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 75 GFPTFKYF-ENGKFVEK 90 (104)
T ss_pred cccEEEEE-eCCCeeEE
Confidence 99999988 67887655
No 197
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.11 E-value=4e-10 Score=92.76 Aligned_cols=69 Identities=23% Similarity=0.540 Sum_probs=58.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++++++. .++.++.++.+.. ..+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~------------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEEL------------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccC------------------------HHHHHhcCCc
Confidence 67 9999999999999999999999999972 2578888776644 2588999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 117 GIPHLVILDENGKVLSD 133 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~ 133 (569)
++|+++++ ++|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 57887754
No 198
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.11 E-value=6.3e-10 Score=101.77 Aligned_cols=119 Identities=26% Similarity=0.466 Sum_probs=92.3
Q ss_pred ccCccCCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC---CCHHHHH
Q 008336 15 LSSSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGD---EDDEAFK 87 (569)
Q Consensus 15 ~g~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d---~~~~~~~ 87 (569)
.....|+| +.+.+|+.+++++++|| +||+|..+.|| .|...+..|.++.+++.+.+ ++++++|++| ++++.++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 45667889 66889999999999999 99999999998 89999999999999998764 7999999999 4578899
Q ss_pred HHHHhCCCcccccCC-chhHHHHHHhcCCC----------------CccEEEEECCCCcEEEc
Q 008336 88 GYFSKMPWLAVPFSD-SETRDKLDELFKVM----------------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~----------------~~P~~~lid~~G~i~~~ 133 (569)
+|.+.++..+..+.. ......+.+.|++. ....++|+|++|+++..
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 999987654443322 23345677777753 23577999999999864
No 199
>PTZ00051 thioredoxin; Provisional
Probab=99.10 E-value=4.1e-10 Score=92.85 Aligned_cols=69 Identities=28% Similarity=0.609 Sum_probs=58.0
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||++|+.+.|.+.++++++. ++.++.|+++.. ..+++.|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDEL------------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcch------------------------HHHHHHCCC
Confidence 466 9999999999999999999999999764 377888877754 258899999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
.++|+++++ ++|+++..
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 78888754
No 200
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.09 E-value=1.7e-10 Score=97.70 Aligned_cols=90 Identities=29% Similarity=0.516 Sum_probs=63.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHH---HhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYN---ELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~---~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
.|| ++|+||++|||+|+.+.+.+.+..+ .+++ ++.++.++++........++...+...+ ......+.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 77 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNV----RLSNKELAQR 77 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSC----HHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhh----hHHHHHHHHH
Confidence 578 9999999999999999999886433 3332 4889999998776655555554332111 1123479999
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 113 FKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~ 132 (569)
|+|.++|+++++|++|+++.
T Consensus 78 ~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 78 YGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp TT--SSSEEEECTTTSCEEE
T ss_pred cCCCccCEEEEEcCCCCEEE
Confidence 99999999999999999875
No 201
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.09 E-value=7.2e-10 Score=94.85 Aligned_cols=74 Identities=20% Similarity=0.489 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh-------hHHHHHHhcCCCcccccCchhhHHH
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ-------TSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~-------~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
|+.++|+|+++|||+|+.+.|.|.++.++. +..|..|++|.+. +.+. ++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~-------------------~~ 78 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLT-------------------AF 78 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHH-------------------HH
Confidence 678999999999999999999999998873 3678999998543 1222 34
Q ss_pred HHhc----CCCCccEEEEECCCCcEEEccc
Q 008336 430 SRKF----KVSGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 430 ~~~~----~v~~~Pt~~lid~~G~i~~~~~ 455 (569)
.+.| +|.++||++++ ++|+.+.+..
T Consensus 79 ~~~~~i~~~i~~~PT~v~~-k~Gk~v~~~~ 107 (122)
T TIGR01295 79 RSRFGIPTSFMGTPTFVHI-TDGKQVSVRC 107 (122)
T ss_pred HHHcCCcccCCCCCEEEEE-eCCeEEEEEe
Confidence 4444 56779999999 8999998853
No 202
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.09 E-value=6.5e-10 Score=91.47 Aligned_cols=69 Identities=25% Similarity=0.592 Sum_probs=59.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.++ ++|+||++||+.|+.+.|.+.++++++.+ ++.++.++.+.++ .+...+++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~------------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQ------------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 467 99999999999999999999999999864 4888888888664 47889999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
.++|+++++ ++|+++.
T Consensus 66 ~~vPt~~i~-~~g~~v~ 81 (97)
T cd02949 66 MGTPTVQFF-KDKELVK 81 (97)
T ss_pred eeccEEEEE-ECCeEEE
Confidence 999999999 5788775
No 203
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.08 E-value=8e-10 Score=92.00 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.|.+++++++.. +.++.++.+... .+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-----------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ-----------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH-----------------------HHHHHCCCC
Confidence 567999999999999999999999999998754 788888776543 588999999
Q ss_pred CccEEEEECCC
Q 008336 437 GIPMLVAIGPS 447 (569)
Q Consensus 437 ~~Pt~~lid~~ 447 (569)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999644
No 204
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.08 E-value=1.9e-09 Score=100.98 Aligned_cols=134 Identities=24% Similarity=0.450 Sum_probs=104.5
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHh-hcCCCeEEEEEeCCC---ChhHHHHHHh-
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIK-ERNESLEVVFISSDR---DQTSFDEFFK- 412 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~-~~~~~~~vv~is~d~---~~~~~~~~~~- 412 (569)
+|.+ +.+|+.+++..++||+++|+|..+.||. |..++..|.++.+++. ....++.+++|++|. +++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 6877 9999999999999999999999999996 9999999999999998 556789999999984 5677888888
Q ss_pred cC--CCcccccCchhhHHHHHhcCCCC---------------ccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHH
Q 008336 413 GM--PWLALPFGDARKASLSRKFKVSG---------------IPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMK 475 (569)
Q Consensus 413 ~~--~~~~~~~~~d~~~~l~~~~~v~~---------------~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~ 475 (569)
.. .|..+....+...++++.|+|.. ...++++|++|+++..... + +. -+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~------~-------~~-~~ 194 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY------G-------EP-PE 194 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC------C-------CC-hH
Confidence 22 25555555666778888888763 2468899999999887321 1 11 35
Q ss_pred HHHHHhhhhhcC
Q 008336 476 EIDGQYNEMAKG 487 (569)
Q Consensus 476 ~l~~~l~~l~~~ 487 (569)
++.+.++.++++
T Consensus 195 ~i~~~l~~l~~~ 206 (207)
T COG1999 195 EIAADLKKLLKE 206 (207)
T ss_pred HHHHHHHHHhhc
Confidence 566777766543
No 205
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.06 E-value=6.2e-10 Score=92.95 Aligned_cols=68 Identities=25% Similarity=0.551 Sum_probs=58.4
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC-CHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.++ ++|.||++||++|+.+.|.+.++++.++..+++.++.++++. . ..+++.|+
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------------~~~~~~~~ 72 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN------------------------KDLAKKYG 72 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc------------------------hhhHHhCC
Confidence 356 999999999999999999999999999744458888888876 3 25889999
Q ss_pred CCCccEEEEECCCC
Q 008336 115 VMGIPHLVILDENG 128 (569)
Q Consensus 115 v~~~P~~~lid~~G 128 (569)
|.++|++++++++|
T Consensus 73 i~~~P~~~~~~~~~ 86 (105)
T cd02998 73 VSGFPTLKFFPKGS 86 (105)
T ss_pred CCCcCEEEEEeCCC
Confidence 99999999997665
No 206
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.06 E-value=1.2e-09 Score=99.69 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=60.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.||++||++|+.+.|.|.++++++. .+.++-|+++.. .++..|+|+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch------------------------hhHHhCCCC
Confidence 4599999999999999999999999999874 367777766632 378899999
Q ss_pred CccEEEEECCCCcEEEccch
Q 008336 437 GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~ 456 (569)
++||++++ ++|+++.+-.+
T Consensus 135 ~vPTllly-k~G~~v~~~vG 153 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVR 153 (175)
T ss_pred CCCEEEEE-ECCEEEEEEec
Confidence 99999999 89999987543
No 207
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.06 E-value=1.5e-09 Score=91.86 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=54.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
++.++|+||++||++|+.+.|.|+++...+ + .+.++.|+.|..+ ++++.|+|.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~-----------------------~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDK-----------------------EKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCH-----------------------HHHHHcCCC
Confidence 567899999999999999999999998775 3 3788888888654 488999999
Q ss_pred CccEEEEECC
Q 008336 437 GIPMLVAIGP 446 (569)
Q Consensus 437 ~~Pt~~lid~ 446 (569)
++||+++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999964
No 208
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.04 E-value=1.3e-09 Score=90.62 Aligned_cols=64 Identities=23% Similarity=0.465 Sum_probs=55.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|.||++||++|+.+.|.+.++++++.. .+.++.++++... .+++.|+|+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~------------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQ------------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchH------------------------HHHHHCCCC
Confidence 56 99999999999999999999999999864 4888888887553 588999999
Q ss_pred CccEEEEECCC
Q 008336 117 GIPHLVILDEN 127 (569)
Q Consensus 117 ~~P~~~lid~~ 127 (569)
++|++++++.+
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999643
No 209
>PTZ00102 disulphide isomerase; Provisional
Probab=99.03 E-value=5.1e-09 Score=112.50 Aligned_cols=185 Identities=17% Similarity=0.212 Sum_probs=114.3
Q ss_pred CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCC
Q 008336 48 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127 (569)
Q Consensus 48 wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~ 127 (569)
-+.......+.+.+++++++.+ +.++.++.+.... .+.+.||+..+|++.+.+.+
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~--~~f~~vd~~~~~~-----------------------~~~~~~gi~~~P~~~i~~~~ 312 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREK--YAFVWLDTEQFGS-----------------------HAKEHLLIEEFPGLAYQSPA 312 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCc--eEEEEEechhcch-----------------------hHHHhcCcccCceEEEEcCC
Confidence 4566667889999999999753 6666666553211 25678999999998887655
Q ss_pred CcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccc-cCCCceeecCCCceeeec-cccCcEEEEEEe
Q 008336 128 GKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLT-SHSRDFVISSDGRKISVS-DLEGKTIGLYFS 205 (569)
Q Consensus 128 G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~-~~~~d~~~~~~~~~~~~~-~~~gk~v~l~f~ 205 (569)
|+.... .. ...-.+.+.|..++......+....+.+-.. ......+....++.+... ...|+.++++|+
T Consensus 313 ~~y~~~-------~~--~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~ 383 (477)
T PTZ00102 313 GRYLLP-------PA--KESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIY 383 (477)
T ss_pred cccCCC-------cc--ccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEE
Confidence 532211 00 0001356677777765432211111111100 001112333344444433 346899999999
Q ss_pred cCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCCCceEEEEC
Q 008336 206 MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIG 285 (569)
Q Consensus 206 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~~Ptlvi~~ 285 (569)
++||++|+.+.|.+.+++..++..+ . +.++.+|.+. ...+++.|+++++||+++++
T Consensus 384 a~wC~~C~~~~p~~~~~a~~~~~~~-~--v~~~~id~~~---------------------~~~~~~~~~v~~~Pt~~~~~ 439 (477)
T PTZ00102 384 APWCGHCKNLEPVYNELGEKYKDND-S--IIVAKMNGTA---------------------NETPLEEFSWSAFPTILFVK 439 (477)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCC-c--EEEEEEECCC---------------------CccchhcCCCcccCeEEEEE
Confidence 9999999999999999988876532 3 4444455432 23456789999999999998
Q ss_pred CCCCc
Q 008336 286 PDGKT 290 (569)
Q Consensus 286 ~~g~~ 290 (569)
.+++.
T Consensus 440 ~~~~~ 444 (477)
T PTZ00102 440 AGERT 444 (477)
T ss_pred CCCcc
Confidence 77653
No 210
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.03 E-value=1.5e-09 Score=90.43 Aligned_cols=66 Identities=23% Similarity=0.543 Sum_probs=55.2
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.+.++++.++...++.+..++++.. .++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-------------------------hhhhhccCC
Confidence 57 9999999999999999999999999997643588888887743 356778899
Q ss_pred CccEEEEECCCC
Q 008336 117 GIPHLVILDENG 128 (569)
Q Consensus 117 ~~P~~~lid~~G 128 (569)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995444
No 211
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.03 E-value=1.8e-09 Score=98.43 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=67.3
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+. |+|+||++||++|+.+.|.|.++++++. .+.++.|+++.. .++..|+|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-------------------------hhHHhCCCC
Confidence 46 9999999999999999999999999985 478888888743 377889999
Q ss_pred CccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
++||++++ ++|+++..- |. ...+.. .++...++.++.
T Consensus 135 ~vPTllly-k~G~~v~~~vG~---~~~~g~--~f~~~~le~~L~ 172 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVRV---TEDLGE--DFDAEDLESFLV 172 (175)
T ss_pred CCCEEEEE-ECCEEEEEEech---HHhcCC--CCCHHHHHHHHH
Confidence 99999999 789888642 11 111211 566777766553
No 212
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.5e-09 Score=94.66 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=91.9
Q ss_pred cccccCccCCceec-C-CCc---eeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC--
Q 008336 12 QSLLSSSARDFLIR-S-NGD---QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-- 82 (569)
Q Consensus 12 ~~~~g~~~pdf~~~-~-~g~---~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~-- 82 (569)
..++|..+|+|..+ . .|. +++++++.|| ++|.|| +...+.|..++..+++.+.+|++.| ++|+++|+|..
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g-~eVigvS~Ds~fs 80 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG-VEVIGVSTDSVFS 80 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC-CEEEEEecCcHHH
Confidence 36899999999553 3 553 9999999999 888887 7888999999999999999999986 99999999952
Q ss_pred HHHHHHHHHhCC-C--cccc-cCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 83 DEAFKGYFSKMP-W--LAVP-FSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 83 ~~~~~~~~~~~~-~--~~~~-~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
-..|.+.+.+.+ . ...| +.|.. .++++.||+. ++-.+||||++|+|+..
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~--~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPK--GEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCc--hhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 334555554444 2 2222 33333 5899999984 45778999999999873
No 213
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.02 E-value=1.2e-09 Score=91.30 Aligned_cols=72 Identities=22% Similarity=0.484 Sum_probs=58.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-ChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-DQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++++|.||++||++|+.+.|.+.++++.++.. ..+.++.++.+. .. .+++.|+|
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~-----------------------~~~~~~~i 73 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEANK-----------------------DLAKKYGV 73 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCcch-----------------------hhHHhCCC
Confidence 579999999999999999999999999998732 246677776665 32 58999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 436 SGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~ 452 (569)
+++|++++++++|+...
T Consensus 74 ~~~P~~~~~~~~~~~~~ 90 (105)
T cd02998 74 SGFPTLKFFPKGSTEPV 90 (105)
T ss_pred CCcCEEEEEeCCCCCcc
Confidence 99999999977764433
No 214
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.99 E-value=1.1e-09 Score=92.24 Aligned_cols=77 Identities=22% Similarity=0.481 Sum_probs=60.1
Q ss_pred CCc-EEEEEec-------CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 37 KGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 37 ~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
+|+ ++|+||| +|||+|+.+.|.+.++.++++. ++.++.|+++..+. +.+. ...
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~---------------w~d~--~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPY---------------WRDP--NNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCccc---------------ccCc--chh
Confidence 578 9999999 9999999999999999999863 47899999886431 0000 135
Q ss_pred HHHhcCCC-CccEEEEECCCCcEEE
Q 008336 109 LDELFKVM-GIPHLVILDENGKVLS 132 (569)
Q Consensus 109 l~~~~~v~-~~P~~~lid~~G~i~~ 132 (569)
+...|+|. ++||+++++..++++.
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecc
Confidence 88899998 9999999965555543
No 215
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.98 E-value=1.3e-09 Score=89.91 Aligned_cols=68 Identities=25% Similarity=0.518 Sum_probs=58.1
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++|.||++||++|+.+.|.+.++++.++....+.++.++++.. ..+++.|+|
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------------------~~~~~~~~i 69 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN------------------------NDLCSEYGV 69 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch------------------------HHHHHhCCC
Confidence 566 9999999999999999999999999986223588888887754 358899999
Q ss_pred CCccEEEEECCCC
Q 008336 116 MGIPHLVILDENG 128 (569)
Q Consensus 116 ~~~P~~~lid~~G 128 (569)
.++|++++++++|
T Consensus 70 ~~~Pt~~~~~~~~ 82 (101)
T cd02961 70 RGYPTIKLFPNGS 82 (101)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999998775
No 216
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.98 E-value=6.6e-09 Score=85.90 Aligned_cols=68 Identities=31% Similarity=0.674 Sum_probs=58.5
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
++ ++|+||++||++|+.+.|.|.++.+++.. ++.++.|+++.+. .+.+.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENP------------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHHcCCC
Confidence 56 99999999999999999999999988863 4899999988663 478899999
Q ss_pred CccEEEEECCCCcEEE
Q 008336 117 GIPHLVILDENGKVLS 132 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~ 132 (569)
++|+++++ ++|+++.
T Consensus 68 ~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVD 82 (101)
T ss_pred cCCEEEEE-eCCcEee
Confidence 99999999 6777654
No 217
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.97 E-value=2.7e-09 Score=91.26 Aligned_cols=79 Identities=19% Similarity=0.418 Sum_probs=55.8
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc--
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF-- 113 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 113 (569)
.|+ ++|+|+++|||+|+.+.|.|.++.++. ++.+..|++|.+.. ....+...-..+.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcCC
Confidence 466 899999999999999999999999872 36799999985421 0000000112344444
Q ss_pred --CCCCccEEEEECCCCcEEEc
Q 008336 114 --KVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 114 --~v~~~P~~~lid~~G~i~~~ 133 (569)
++.++||++++ ++|+.+.+
T Consensus 85 ~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 85 PTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred cccCCCCCEEEEE-eCCeEEEE
Confidence 46679999999 78988764
No 218
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.97 E-value=2.3e-09 Score=88.47 Aligned_cols=73 Identities=23% Similarity=0.481 Sum_probs=59.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|.||++||++|+.+.|.+.++++.++. ...+.++.++.+... .+++.|+|+
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~-----------------------~~~~~~~i~ 70 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANN-----------------------DLCSEYGVR 70 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchH-----------------------HHHHhCCCC
Confidence 56999999999999999999999999999851 124777777766543 589999999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|++++++++|+.+.+
T Consensus 71 ~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 71 GYPTIKLFPNGSKEPVK 87 (101)
T ss_pred CCCEEEEEcCCCccccc
Confidence 99999999877644443
No 219
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.97 E-value=5.3e-09 Score=89.24 Aligned_cols=86 Identities=24% Similarity=0.208 Sum_probs=61.4
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
..+.-++| |||+|+|+||++|+.+.+.. .++.+.+.+ ++.+|.|+.+..++..+.+.+
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~---------------- 70 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMN---------------- 70 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHH----------------
Confidence 33445788 99999999999999987632 245555533 488888888766543333221
Q ss_pred HHHHhcCCCCccEEEEECCCCcEEEcCC
Q 008336 108 KLDELFKVMGIPHLVILDENGKVLSDGG 135 (569)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~i~~~~~ 135 (569)
.....|++.++|+++++|++|++++..+
T Consensus 71 ~~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 71 AAQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred HHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 2334679999999999999999998653
No 220
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.96 E-value=3.4e-09 Score=88.27 Aligned_cols=67 Identities=22% Similarity=0.532 Sum_probs=54.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.|.+.++++.+++. ..+.+..++.+.. +++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch------------------------hhhhhccCC
Confidence 689999999999999999999999999998752 2466666665533 256778899
Q ss_pred CccEEEEECCCC
Q 008336 437 GIPMLVAIGPSG 448 (569)
Q Consensus 437 ~~Pt~~lid~~G 448 (569)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995444
No 221
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.95 E-value=2.9e-09 Score=90.05 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=53.1
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++|+|||+||++|+.+.|.+.++++.+ + .+.+..|+.|..+ .++..|+|.++|
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~------------------------~l~~~~~v~~vP 77 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDK------------------------EKAEKYGVERVP 77 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCH------------------------HHHHHcCCCcCC
Confidence 889999999999999999999998875 2 4889999988664 488999999999
Q ss_pred EEEEECCC
Q 008336 120 HLVILDEN 127 (569)
Q Consensus 120 ~~~lid~~ 127 (569)
++++++.+
T Consensus 78 t~~i~~~g 85 (113)
T cd02975 78 TTIFLQDG 85 (113)
T ss_pred EEEEEeCC
Confidence 99999643
No 222
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.93 E-value=4.1e-09 Score=109.35 Aligned_cols=71 Identities=18% Similarity=0.393 Sum_probs=58.2
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
..++++||+|||+||++|+.+.|.|+++++++++. ++.++.|++|.+.. ...++.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCcc---------------------HHHHHHcC
Confidence 35899999999999999999999999999999754 47888888886531 12346899
Q ss_pred CCCccEEEEECCCCc
Q 008336 435 VSGIPMLVAIGPSGR 449 (569)
Q Consensus 435 v~~~Pt~~lid~~G~ 449 (569)
|+++||++++. +|.
T Consensus 426 I~~~PTii~Fk-~g~ 439 (463)
T TIGR00424 426 LGSFPTILFFP-KHS 439 (463)
T ss_pred CCccceEEEEE-CCC
Confidence 99999999994 443
No 223
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.92 E-value=8.7e-09 Score=81.76 Aligned_cols=63 Identities=19% Similarity=0.385 Sum_probs=51.7
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
.+..||++||++|+.+.|.|+++++.++.. +.++.|+.+.++ ++++.|+++++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~-----------------------~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENP-----------------------QKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCH-----------------------HHHHHcCCccCC
Confidence 467899999999999999999999888643 788888877654 467889999999
Q ss_pred EEEEECCCCcEE
Q 008336 440 MLVAIGPSGRTI 451 (569)
Q Consensus 440 t~~lid~~G~i~ 451 (569)
++++ +|+.+
T Consensus 56 t~~~---~g~~~ 64 (82)
T TIGR00411 56 AIVI---NGDVE 64 (82)
T ss_pred EEEE---CCEEE
Confidence 9986 56643
No 224
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.88 E-value=1.1e-08 Score=94.60 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++|||.||++||++|+.+.|.|.+++.++. .+.++-|+++. ....|+++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~--------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQ--------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHH--------------------------hHhhCCCC
Confidence 4699999999999999999999999999985 26666666541 24679999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
++||++++ ++|+++.+-.+-. ..|+. -++..+++.+
T Consensus 152 ~lPTlliy-k~G~~v~~ivG~~--~~gg~--~~~~~~lE~~ 187 (192)
T cd02988 152 NLPTILVY-RNGDIVKQFIGLL--EFGGM--NTTMEDLEWL 187 (192)
T ss_pred CCCEEEEE-ECCEEEEEEeCch--hhCCC--CCCHHHHHHH
Confidence 99999999 8999998854321 12322 3555555444
No 225
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.87 E-value=9.2e-09 Score=87.62 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=65.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH---HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLI---DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++|+|+|+|++.||++|+++...+- ++.+.+.. ++.+|-+..|.+.. .+. .
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~----------------------~~~-~ 75 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDK----------------------NLS-P 75 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCC----------------------CcC-c
Confidence 4899999999999999999988753 23333322 35555555543310 000 1
Q ss_pred cCCCCccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhh
Q 008336 433 FKVSGIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEM 484 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l 484 (569)
.+ .++||++|+|++|+++.+-. ..++...|-+.+.+++.|.+.+++.
T Consensus 76 ~g-~~vPtivFld~~g~vi~~i~----Gy~~~~~~~y~~~~~~~~~~~m~~a 122 (130)
T cd02960 76 DG-QYVPRIMFVDPSLTVRADIT----GRYSNRLYTYEPADIPLLIENMKKA 122 (130)
T ss_pred cC-cccCeEEEECCCCCCccccc----ccccCccceeCcCcHHHHHHHHHHH
Confidence 22 57999999999999998842 3455666777778887777766554
No 226
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.87 E-value=5.6e-09 Score=108.31 Aligned_cols=69 Identities=17% Similarity=0.366 Sum_probs=57.3
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (569)
.+++ +||+|||+||++|+.+.|.|.+++++++..+ +.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~-v~~~kVdvD~~~~----------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG-VKVAKFRADGDQK----------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC-cEEEEEECCCCcc----------------------HHHHHHcC
Confidence 3677 9999999999999999999999999997654 8899999986532 12346899
Q ss_pred CCCccEEEEECCC
Q 008336 115 VMGIPHLVILDEN 127 (569)
Q Consensus 115 v~~~P~~~lid~~ 127 (569)
|.++||++++.++
T Consensus 426 I~~~PTii~Fk~g 438 (463)
T TIGR00424 426 LGSFPTILFFPKH 438 (463)
T ss_pred CCccceEEEEECC
Confidence 9999999999543
No 227
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.87 E-value=1.3e-08 Score=94.04 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ |+|+||++||++|+.+.|.|.+++.+|. .+.++.|+++. ....|++
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~---------------------------~~~~~~i 150 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQ---------------------------CIPNYPD 150 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHH---------------------------hHhhCCC
Confidence 356 9999999999999999999999999985 37788777652 2467999
Q ss_pred CCccEEEEECCCCcEEEcC-CcceeecccCCCCCccHHHHHHHHH
Q 008336 116 MGIPHLVILDENGKVLSDG-GVEIIREYGVEGYPFTVERIKEMKE 159 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 159 (569)
.++||++++ ++|+++..- |. ...|.. .++.+.++.++.
T Consensus 151 ~~lPTlliy-k~G~~v~~ivG~---~~~gg~--~~~~~~lE~~L~ 189 (192)
T cd02988 151 KNLPTILVY-RNGDIVKQFIGL---LEFGGM--NTTMEDLEWLLV 189 (192)
T ss_pred CCCCEEEEE-ECCEEEEEEeCc---hhhCCC--CCCHHHHHHHHH
Confidence 999999999 889888652 21 122222 566777766553
No 228
>PLN02309 5'-adenylylsulfate reductase
Probab=98.87 E-value=1e-08 Score=106.39 Aligned_cols=68 Identities=19% Similarity=0.447 Sum_probs=56.3
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH-hcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~ 434 (569)
+++++||+||++||++|+.+.|.|.+++++++.. ++.++.|++|.+. ..+++ .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcc----------------------hHHHHhhCC
Confidence 5899999999999999999999999999998754 5888888877322 13665 699
Q ss_pred CCCccEEEEECCC
Q 008336 435 VSGIPMLVAIGPS 447 (569)
Q Consensus 435 v~~~Pt~~lid~~ 447 (569)
|+++||++++.++
T Consensus 420 I~~~PTil~f~~g 432 (457)
T PLN02309 420 LGSFPTILLFPKN 432 (457)
T ss_pred CceeeEEEEEeCC
Confidence 9999999999543
No 229
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.85 E-value=4.4e-08 Score=92.49 Aligned_cols=72 Identities=24% Similarity=0.488 Sum_probs=60.5
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
.. |+|.|||.||+.++.++|.+.++++.++++- +-.+|...+|.+.+ ..++.+|.|
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I 70 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHI 70 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhcc
Confidence 45 9999999999999999999999999887653 34567777776655 369999999
Q ss_pred CCccEEEEECCCCcEEE
Q 008336 116 MGIPHLVILDENGKVLS 132 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~ 132 (569)
..+||+.++ ++|.+..
T Consensus 71 ~KyPTlKvf-rnG~~~~ 86 (375)
T KOG0912|consen 71 NKYPTLKVF-RNGEMMK 86 (375)
T ss_pred ccCceeeee-eccchhh
Confidence 999999999 7898765
No 230
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1e-08 Score=105.67 Aligned_cols=70 Identities=29% Similarity=0.604 Sum_probs=58.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...++|.||||||+||++++|.+++++..+++....+.+. .+|.+.+ ..++.+|+|+
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~La--kVDat~~---------------------~~~~~~y~v~ 98 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLA--KVDATEE---------------------SDLASKYEVR 98 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeE--Eeecchh---------------------hhhHhhhcCC
Confidence 5789999999999999999999999999999764444444 4555542 4699999999
Q ss_pred CccEEEEECCCCcE
Q 008336 437 GIPMLVAIGPSGRT 450 (569)
Q Consensus 437 ~~Pt~~lid~~G~i 450 (569)
++||+-++ ++|+.
T Consensus 99 gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 99 GYPTLKIF-RNGRS 111 (493)
T ss_pred CCCeEEEE-ecCCc
Confidence 99999999 88885
No 231
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.79 E-value=2.3e-08 Score=108.36 Aligned_cols=74 Identities=19% Similarity=0.454 Sum_probs=58.7
Q ss_pred CCCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 355 LAGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 355 ~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.++++++.+ ...++.+
T Consensus 472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~-------------------~~~~l~~ 528 (571)
T PRK00293 472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNA-------------------EDVALLK 528 (571)
T ss_pred hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCCh-------------------hhHHHHH
Confidence 4589999999999999999998864 45566653 37777777765421 1346889
Q ss_pred hcCCCCccEEEEECCCCcEE
Q 008336 432 KFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~i~ 451 (569)
+|++.++||++++|++|+++
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HcCCCCCCEEEEECCCCCCc
Confidence 99999999999999999985
No 232
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.2e-09 Score=94.46 Aligned_cols=72 Identities=31% Similarity=0.600 Sum_probs=59.3
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
++.-.+| |+|+|+|+||+||++..|.+..++.+|. ...++.|++|..+ ..+.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~------------------------~taa 68 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECR------------------------GTAA 68 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhh------------------------chhh
Confidence 4444678 9999999999999999999999999996 2667888887553 3678
Q ss_pred hcCCCCccEEEEECCCCcEEE
Q 008336 112 LFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~ 132 (569)
.+||.++||++++ ++|.-+.
T Consensus 69 ~~gV~amPTFiff-~ng~kid 88 (288)
T KOG0908|consen 69 TNGVNAMPTFIFF-RNGVKID 88 (288)
T ss_pred hcCcccCceEEEE-ecCeEee
Confidence 8999999999999 6775543
No 233
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.78 E-value=4.3e-08 Score=79.18 Aligned_cols=69 Identities=25% Similarity=0.597 Sum_probs=58.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+++++|+||++||++|+.+.+.|.++.+. . .++.++.++.+... .+++.|++.
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~-----------------------~~~~~~~v~ 62 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENP-----------------------ELAEEYGVR 62 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCCh-----------------------hHHHhcCcc
Confidence 38999999999999999999999998877 2 25888888887654 478899999
Q ss_pred CccEEEEECCCCcEEEc
Q 008336 437 GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~ 453 (569)
++|+++++ .+|+++..
T Consensus 63 ~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 63 SIPTFLFF-KNGKEVDR 78 (93)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 56776665
No 234
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.78 E-value=4e-08 Score=77.91 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=50.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..||++||++|+...|.+.+++++++. ++.++.|+.+.++ .+.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~vPt 56 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENP------------------------QKAMEYGIMAVPA 56 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCH------------------------HHHHHcCCccCCE
Confidence 5679999999999999999999998853 4888898888664 3677899999999
Q ss_pred EEEECCCCcE
Q 008336 121 LVILDENGKV 130 (569)
Q Consensus 121 ~~lid~~G~i 130 (569)
+++ +|+.
T Consensus 57 ~~~---~g~~ 63 (82)
T TIGR00411 57 IVI---NGDV 63 (82)
T ss_pred EEE---CCEE
Confidence 875 5653
No 235
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.3e-08 Score=85.71 Aligned_cols=112 Identities=24% Similarity=0.355 Sum_probs=91.4
Q ss_pred ccccCccCCc-eecCCCceeecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHH
Q 008336 13 SLLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKG 88 (569)
Q Consensus 13 ~~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~ 88 (569)
..+|+++||| +.+.+|..++|..+.|+ |+++|| +.-.|.|.++.-.|+.-|++++..+ .+|++++.|. ....+.
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~-aeV~GlS~D~-s~sqKa 140 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG-AEVIGLSGDD-SASQKA 140 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC-ceEEeeccCc-hHHHHH
Confidence 3569999999 66889999999999887 666666 5566889999999999999998775 8999999994 566788
Q ss_pred HHHhCCCcccccCCchhHHHHHHhcCCCCcc-------EEEEECCCC
Q 008336 89 YFSKMPWLAVPFSDSETRDKLDELFKVMGIP-------HLVILDENG 128 (569)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G 128 (569)
|..+++.++..++|... ++.+.+|+...| ..+++|++|
T Consensus 141 F~sKqnlPYhLLSDpk~--e~ik~lGa~k~p~gg~~~Rsh~if~kg~ 185 (211)
T KOG0855|consen 141 FASKQNLPYHLLSDPKN--EVIKDLGAPKDPFGGLPGRSHYIFDKGG 185 (211)
T ss_pred hhhhccCCeeeecCcch--hHHHHhCCCCCCCCCcccceEEEEecCC
Confidence 88899988888887765 688888886544 567787665
No 236
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.5e-08 Score=85.68 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=91.1
Q ss_pred eecCCCCceecccCCCCEEEEEEec-CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHHHHHHhcCCC--
Q 008336 342 VVGKNGGKVPVSDLAGKTILLYFSA-HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSFDEFFKGMPW-- 416 (569)
Q Consensus 342 ~~~~~g~~v~l~~~~gk~vll~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~~~~~-- 416 (569)
+++...+.++|++++||+|++.||. .+--.|..+.-.+.+.+.+|+.. +.+|+++|+|.. .-+|...-++.+.
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~--n~eVig~S~DS~fshlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL--NTEVLGISTDSVFSHLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc--CCeEEEEeccchhhhhhHhcCchhhCCcC
Confidence 4577889999999999999999994 45456999999999999999877 689999999964 2344444444433
Q ss_pred -cccccCchhhHHHHHhcCCC------CccEEEEECCCCcEEEccch
Q 008336 417 -LALPFGDARKASLSRKFKVS------GIPMLVAIGPSGRTITKEAR 456 (569)
Q Consensus 417 -~~~~~~~d~~~~l~~~~~v~------~~Pt~~lid~~G~i~~~~~~ 456 (569)
+++|++.|.+.++++.|||- .+..+++||++|.++.....
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITIN 142 (196)
T ss_pred ccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeec
Confidence 56999999999999999984 45689999999999886443
No 237
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.76 E-value=6.6e-08 Score=89.48 Aligned_cols=116 Identities=24% Similarity=0.408 Sum_probs=93.8
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChh-HHhhhHHHHHHHHHHhhcC-CCeEEEEEeCCC---ChhHHHHHHhc
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPP-CRAFLPKLIDAYKKIKERN-ESLEVVFISSDR---DQTSFDEFFKG 413 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~-C~~~~~~l~~l~~~~~~~~-~~~~vv~is~d~---~~~~~~~~~~~ 413 (569)
.|.| +.+|+.++-.+|.||.+|+||-.+.||. |..++..|.++.+++.++. ..+.=|+|++|. +.+.+++|+++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 4666 9999999999999999999999999996 9999999999999987652 123358899985 67888999997
Q ss_pred CC--CcccccCchhhHHHHHhcCCCCc--c-------------EEEEECCCCcEEEccc
Q 008336 414 MP--WLALPFGDARKASLSRKFKVSGI--P-------------MLVAIGPSGRTITKEA 455 (569)
Q Consensus 414 ~~--~~~~~~~~d~~~~l~~~~~v~~~--P-------------t~~lid~~G~i~~~~~ 455 (569)
+. .+.++-..+.-..+++.|.|.-. | .+|||||+|..+...|
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 74 35566666667788999988633 2 4789999999988644
No 238
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-07 Score=80.89 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=85.8
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 410 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~~ 410 (569)
-+|.+ +.+|++++|++++||++||.-.|+-|+.-. +...|+.||++|+++ ++.|+++.++. +.+++++|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHH
Confidence 36766 899999999999999999999999999877 556799999999987 89999999863 45788888
Q ss_pred HhcCCCcccccCch------hhHHHHHhc-----------CCCCccEEEEECCCCcEEEcc
Q 008336 411 FKGMPWLALPFGDA------RKASLSRKF-----------KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 411 ~~~~~~~~~~~~~d------~~~~l~~~~-----------~v~~~Pt~~lid~~G~i~~~~ 454 (569)
.+..-..+||+... ..+.|.+.+ .|..-=+-||||++|+|+.|.
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 87655577775431 112222221 122223789999999999994
No 239
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.75 E-value=2.8e-07 Score=98.57 Aligned_cols=186 Identities=16% Similarity=0.160 Sum_probs=113.7
Q ss_pred EecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC--CccEE
Q 008336 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHL 121 (569)
Q Consensus 44 F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~ 121 (569)
|-......|......+.+++++++.. .+.++.++.+.. ..+++.+++. .+|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~~~~-~i~f~~~d~~~~------------------------~~~~~~~~~~~~~~P~~ 296 (462)
T TIGR01130 242 NVDESLDPFEELRNRFLEAAKKFRGK-FVNFAVADEEDF------------------------GRELEYFGLKAEKFPAV 296 (462)
T ss_pred EecCCchHHHHHHHHHHHHHHHCCCC-eEEEEEecHHHh------------------------HHHHHHcCCCccCCceE
Confidence 33445566888899999999888641 355555443322 3477788887 69999
Q ss_pred EEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccC-CCceeecCCCceeeecc-ccCcE
Q 008336 122 VILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSH-SRDFVISSDGRKISVSD-LEGKT 199 (569)
Q Consensus 122 ~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~-~~d~~~~~~~~~~~~~~-~~gk~ 199 (569)
++++.+|...+. + .....+.+.|.+++++...........+-.... ....+....++++.... ..++.
T Consensus 297 vi~~~~~~~~y~--------~--~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~ 366 (462)
T TIGR01130 297 AIQDLEGNKKYP--------M--DQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKD 366 (462)
T ss_pred EEEeCCcccccC--------C--CcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCe
Confidence 999877622211 1 111456777888876643222111111110000 11122333344443322 25789
Q ss_pred EEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCCCc
Q 008336 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 279 (569)
Q Consensus 200 v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~~P 279 (569)
++++|+++||++|+.+.|.+.++++.++.....+.++.++++.+. +.. +++.++|
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~------------------------~~~-~~i~~~P 421 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND------------------------VPP-FEVEGFP 421 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc------------------------cCC-CCccccC
Confidence 999999999999999999999999998763223444444443321 223 8899999
Q ss_pred eEEEECCCCC
Q 008336 280 TLVIIGPDGK 289 (569)
Q Consensus 280 tlvi~~~~g~ 289 (569)
+++++..+++
T Consensus 422 t~~~~~~~~~ 431 (462)
T TIGR01130 422 TIKFVPAGKK 431 (462)
T ss_pred EEEEEeCCCC
Confidence 9999976554
No 240
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.74 E-value=4.1e-08 Score=81.62 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=56.9
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|... .+++.|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~-----------------------~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFG-----------------------RHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhH-----------------------HHHHHcCCC
Confidence 789999999999999999999999999999865 888888777543 488999999
Q ss_pred --CccEEEEECC
Q 008336 437 --GIPMLVAIGP 446 (569)
Q Consensus 437 --~~Pt~~lid~ 446 (569)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999966
No 241
>PLN02309 5'-adenylylsulfate reductase
Probab=98.74 E-value=3.4e-08 Score=102.58 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=56.2
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHHhCCCcccccCCchhHHHHHH-hc
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LF 113 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 113 (569)
+++ +||+||||||++|+.+.|.|.++++++... ++.++.|++| ... .++. .|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~------------------------~la~~~~ 418 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQK------------------------EFAKQEL 418 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcch------------------------HHHHhhC
Confidence 577 999999999999999999999999999765 4999999988 432 3554 69
Q ss_pred CCCCccEEEEECCC
Q 008336 114 KVMGIPHLVILDEN 127 (569)
Q Consensus 114 ~v~~~P~~~lid~~ 127 (569)
+|.++||++++.++
T Consensus 419 ~I~~~PTil~f~~g 432 (457)
T PLN02309 419 QLGSFPTILLFPKN 432 (457)
T ss_pred CCceeeEEEEEeCC
Confidence 99999999999543
No 242
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.2e-08 Score=84.88 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=91.4
Q ss_pred ccCCcccee-cCCCCceecccCCCC-EEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 335 VSGDLDFVV-GKNGGKVPVSDLAGK-TILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
....|||++ |.+|+.++|..+.|+ +||++|| +...|.|.++.-.+..-|++++.. +.+|+++|.|.. ...++|.
T Consensus 66 Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka--~aeV~GlS~D~s-~sqKaF~ 142 (211)
T KOG0855|consen 66 GDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA--GAEVIGLSGDDS-ASQKAFA 142 (211)
T ss_pred CCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc--CceEEeeccCch-HHHHHhh
Confidence 344699998 999999999999885 8888888 556677999999999999999865 689999999966 5677777
Q ss_pred hcCCCcccccCchhhHHHHHhcCCCCcc-------EEEEECCCCc
Q 008336 412 KGMPWLALPFGDARKASLSRKFKVSGIP-------MLVAIGPSGR 449 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v~~~P-------t~~lid~~G~ 449 (569)
+.+. +.+.++.|+.+++.+.+|+...| +.++++++|.
T Consensus 143 sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 143 SKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred hhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 7776 66777899999999999987644 6777877653
No 243
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.73 E-value=1.4e-07 Score=88.42 Aligned_cols=113 Identities=24% Similarity=0.470 Sum_probs=88.9
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhc-CCC-CEEEEEEeCC---CCHHHHHHHHH-
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELS-RQG-DFEVIFVSGD---EDDEAFKGYFS- 91 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~-~~g-~~~vv~v~~d---~~~~~~~~~~~- 91 (569)
+| +.+.+|+.+++.+++|| ++|+|.-+.|| .|..++..|.++.+++. ..+ ++++++|++| ++++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 78 56789999999999999 99999999999 89999999999999998 444 7999999998 46778888888
Q ss_pred hCCCcccccCC-chhHHHHHHhcCCCC---------------ccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFSD-SETRDKLDELFKVMG---------------IPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~~-~~~~~~l~~~~~v~~---------------~P~~~lid~~G~i~~~ 133 (569)
.....+..+.. .+..+.+++.|++.. ...++++|++|+++..
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 33333333332 445567888888752 2356889999988763
No 244
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.72 E-value=6.6e-08 Score=78.09 Aligned_cols=66 Identities=35% Similarity=0.697 Sum_probs=55.6
Q ss_pred c-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 39 K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 39 k-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
+ ++|+||++||++|+.+.+.+.++.+. . +++.++.++++... .+.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~-~~~~~~~i~~~~~~------------------------~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--Y-PKVKFVKVDVDENP------------------------ELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--C-CCceEEEEECCCCh------------------------hHHHhcCccc
Confidence 6 99999999999999999999999887 2 35889999988653 4888999999
Q ss_pred ccEEEEECCCCcEEE
Q 008336 118 IPHLVILDENGKVLS 132 (569)
Q Consensus 118 ~P~~~lid~~G~i~~ 132 (569)
+|++++++ +|+++.
T Consensus 64 ~P~~~~~~-~g~~~~ 77 (93)
T cd02947 64 IPTFLFFK-NGKEVD 77 (93)
T ss_pred ccEEEEEE-CCEEEE
Confidence 99999994 566443
No 245
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.71 E-value=5.2e-08 Score=92.01 Aligned_cols=94 Identities=19% Similarity=0.359 Sum_probs=78.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...|+|.|||.||+.++.+.|.+.+.+.+++++..+-.+|+.++|++++ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 5699999999999999999999999999999887777899999998864 4689999999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
.+||+-++ .+|.+..+.-| ..+.+++|.+-|+..+
T Consensus 72 KyPTlKvf-rnG~~~~rEYR-------------g~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREYR-------------GQRSVEALIEFIEKQL 106 (375)
T ss_pred cCceeeee-eccchhhhhhc-------------cchhHHHHHHHHHHHh
Confidence 99999999 89998887533 2345566666665544
No 246
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.70 E-value=6.8e-08 Score=75.24 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=47.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
.|.||++||++|+.+.|.++++.+++..+ +.++ .+|. .+ .+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~--~v~~-~~-----------------------~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFE--KVTD-MN-----------------------EILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEE--EeCC-HH-----------------------HHHHcCCCcCCE
Confidence 37899999999999999999999988543 5554 4442 21 356799999999
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
+++ +|+++..
T Consensus 53 i~i---~G~~~~~ 62 (76)
T TIGR00412 53 VAV---DGELVIM 62 (76)
T ss_pred EEE---CCEEEEE
Confidence 999 7887744
No 247
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.69 E-value=1.6e-08 Score=95.00 Aligned_cols=76 Identities=16% Similarity=0.327 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
...++|.||||||++|+++.|.|.++--.+++- +..|-.-.+|.+.- ..++..|+|+
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdi--g~PikVGKlDaT~f---------------------~aiAnefgiq 99 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI--GLPIKVGKLDATRF---------------------PAIANEFGIQ 99 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhc--CCceeecccccccc---------------------hhhHhhhccC
Confidence 458999999999999999999999998888865 34444444565431 2588999999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
|+||+.++..+..+-++++
T Consensus 100 GYPTIk~~kgd~a~dYRG~ 118 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDYRGG 118 (468)
T ss_pred CCceEEEecCCeeeecCCC
Confidence 9999999955555555544
No 248
>PHA02125 thioredoxin-like protein
Probab=98.68 E-value=8.9e-08 Score=74.46 Aligned_cols=57 Identities=26% Similarity=0.597 Sum_probs=42.5
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+++||++||++|+.+.|.|.++. +.++-|+.|..+ ++++.|+|+++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~-----------------------~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGV-----------------------ELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCH-----------------------HHHHHcCCceeCe
Confidence 78999999999999999886431 344445544433 5899999999999
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
++ +|+.+.+
T Consensus 50 ~~----~g~~~~~ 58 (75)
T PHA02125 50 LV----NTSTLDR 58 (75)
T ss_pred EE----CCEEEEE
Confidence 87 4665544
No 249
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.66 E-value=1.3e-07 Score=71.81 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=49.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++|||+|++..+.|.++.+... ++.+..++++.++ ++.+.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~------------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFP------------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCH------------------------hHHHHcCCcccCE
Confidence 577999999999999999999976532 4888888887653 3778899999999
Q ss_pred EEEECCCCcEEE
Q 008336 121 LVILDENGKVLS 132 (569)
Q Consensus 121 ~~lid~~G~i~~ 132 (569)
+++ +|+++.
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 765 466654
No 250
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.65 E-value=1.1e-07 Score=72.24 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=50.5
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
-++.|+++||++|++..+.|+++.+.. .++.+..++++.++ ++++.|++.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~-----------------------~l~~~~~i~~vP 54 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP-----------------------DLADEYGVMSVP 54 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH-----------------------hHHHHcCCcccC
Confidence 367899999999999999998886653 24788888777654 478899999999
Q ss_pred EEEEECCCCcEEEc
Q 008336 440 MLVAIGPSGRTITK 453 (569)
Q Consensus 440 t~~lid~~G~i~~~ 453 (569)
++++ +|+++..
T Consensus 55 ti~i---~~~~~~~ 65 (67)
T cd02973 55 AIVI---NGKVEFV 65 (67)
T ss_pred EEEE---CCEEEEe
Confidence 9865 4677664
No 251
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.64 E-value=1.1e-07 Score=80.96 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=61.4
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+.-+|| ++|+|++.||++|+.+...+- ++.+.+. + ++.+|.+..|.+.. .
T Consensus 18 ~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-~-~Fv~V~l~~d~td~-----------------------~ 72 (130)
T cd02960 18 KAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-E-DFIMLNLVHETTDK-----------------------N 72 (130)
T ss_pred HHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-h-CeEEEEEEeccCCC-----------------------C
Confidence 3444788 999999999999999977652 3333332 2 36556666553310 0
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHH
Q 008336 109 LDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 161 (569)
.. ..+ .++|+++++|++|+++.+- ...++...|-+.+.+|..+.+.-
T Consensus 73 ~~-~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m 119 (130)
T cd02960 73 LS-PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENM 119 (130)
T ss_pred cC-ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHH
Confidence 00 122 5799999999999988752 33444455555566666655443
No 252
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.4e-07 Score=77.95 Aligned_cols=117 Identities=23% Similarity=0.212 Sum_probs=94.7
Q ss_pred cccCccCCc-eecCCCceeecCCCCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHH
Q 008336 14 LLSSSARDF-LIRSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~v~l~~~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~ 90 (569)
.+|+++|+| +.+.+.+.++++++.|| ++..|-+-.-|.|......|++.+.++. +..|+.||.| -+-+..+|+
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~---~~~Vl~IS~D-LPFAq~RfC 94 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG---NTVVLCISMD-LPFAQKRFC 94 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC---CcEEEEEeCC-ChhHHhhhh
Confidence 579999999 55689999999999999 6666778889999999999999998875 4789999998 678889999
Q ss_pred HhCCCcccccCCchhHHHHHHhcCCC--Cc-------cEEEEECCCCcEEEcC
Q 008336 91 SKMPWLAVPFSDSETRDKLDELFKVM--GI-------PHLVILDENGKVLSDG 134 (569)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-------P~~~lid~~G~i~~~~ 134 (569)
...+...+....+-....+.+.||+. .. .+.+++|.+|+|++..
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e 147 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence 99988755443333335688899862 33 4679999999999853
No 253
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.63 E-value=1.4e-07 Score=73.38 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=46.1
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
-|.||++|||+|+.+.|.+.++.+++.. .+.++-| | +.+ .+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v--~-~~~------------------------~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKV--T-DMN------------------------EILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEe--C-CHH------------------------HHHHcCCCcCCE
Confidence 3789999999999999999999999853 3565544 4 222 346699999999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+++
T Consensus 53 i~i---~G~~~ 60 (76)
T TIGR00412 53 VAV---DGELV 60 (76)
T ss_pred EEE---CCEEE
Confidence 888 78766
No 254
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.63 E-value=1.6e-07 Score=78.47 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=48.9
Q ss_pred CCc-EEEEEec--CCCH---hhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 37 KGK-IGLYFSA--SWCG---PCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 37 ~gk-vlv~F~a--~wC~---~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
+.+ +||.||| |||+ +|.+++|++.+.+. ++.|..|++++-.+ ..+..|+
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~-------------------~~~~~L~ 71 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGE-------------------KLNMELG 71 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccc-------------------hhhHHHH
Confidence 456 9999999 9999 88888877776643 37788887753110 0114799
Q ss_pred HhcCCC--CccEEEEECCCC
Q 008336 111 ELFKVM--GIPHLVILDENG 128 (569)
Q Consensus 111 ~~~~v~--~~P~~~lid~~G 128 (569)
++|+|+ ++||++++. +|
T Consensus 72 ~~y~I~~~gyPTl~lF~-~g 90 (116)
T cd03007 72 ERYKLDKESYPVIYLFH-GG 90 (116)
T ss_pred HHhCCCcCCCCEEEEEe-CC
Confidence 999999 999999994 55
No 255
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.62 E-value=9.6e-08 Score=103.54 Aligned_cols=76 Identities=24% Similarity=0.483 Sum_probs=60.0
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+..+|| |+|+|||+||++|+.+.+.. .++.++++ ++.++.++++++.+ ...+
T Consensus 469 ~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~--------------------~~~~ 525 (571)
T PRK00293 469 EAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNA--------------------EDVA 525 (571)
T ss_pred HHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCCh--------------------hhHH
Confidence 3445689 99999999999999988765 56666664 37788888875422 1246
Q ss_pred HHHhcCCCCccEEEEECCCCcEE
Q 008336 109 LDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
+.+.|++.++|+++++|++|+++
T Consensus 526 l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 526 LLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHHcCCCCCCEEEEECCCCCCc
Confidence 88999999999999999999875
No 256
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.59 E-value=3.5e-07 Score=84.80 Aligned_cols=116 Identities=21% Similarity=0.358 Sum_probs=92.3
Q ss_pred CCc-eecCCCceeecCCCCCc-EEEEEecCCCH-hhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCC---CHHHHHHHHH
Q 008336 20 RDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFS 91 (569)
Q Consensus 20 pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~-~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~---~~~~~~~~~~ 91 (569)
-+| |++.+|+.++-.++.|| +||+|-.+.|| .|..++..|.++.+++.++. .+.-++|++|. +.+.+..|++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~ 199 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS 199 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence 367 77899999999999999 99999999999 89999999999999987665 34468999985 7788999999
Q ss_pred hCCCcccccCCc-hhHHHHHHhcCCCCc--c-------------EEEEECCCCcEEEcCC
Q 008336 92 KMPWLAVPFSDS-ETRDKLDELFKVMGI--P-------------HLVILDENGKVLSDGG 135 (569)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~l~~~~~v~~~--P-------------~~~lid~~G~i~~~~~ 135 (569)
++....+-+..+ +.-..+++.|.|.-- | .++|+|++|+++..-|
T Consensus 200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~G 259 (280)
T KOG2792|consen 200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYG 259 (280)
T ss_pred hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhc
Confidence 987655555443 334678888887422 2 3588999999886533
No 257
>PHA02125 thioredoxin-like protein
Probab=98.58 E-value=2.2e-07 Score=72.25 Aligned_cols=50 Identities=32% Similarity=0.628 Sum_probs=39.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|||+||++|+.+.|.|.++. +.++-|+.+... ++++.|+|.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~------------------------~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGV------------------------ELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCH------------------------HHHHHcCCceeCe
Confidence 78999999999999999986542 345556655543 5889999999999
Q ss_pred EE
Q 008336 121 LV 122 (569)
Q Consensus 121 ~~ 122 (569)
++
T Consensus 50 ~~ 51 (75)
T PHA02125 50 LV 51 (75)
T ss_pred EE
Confidence 76
No 258
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.54 E-value=6.9e-07 Score=75.74 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHH-H--HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
++|+++|+|+++||++|+.+... | .++.+.+.+. +.++.++++.. + ...+++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~-e--------------------~~~~~~~ 71 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSS-E--------------------GQRFLQS 71 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCc-c--------------------HHHHHHH
Confidence 48999999999999999998764 3 2344444432 55555544432 1 2468889
Q ss_pred cCCCCccEEEEECC-CCcEEEcc
Q 008336 433 FKVSGIPMLVAIGP-SGRTITKE 454 (569)
Q Consensus 433 ~~v~~~Pt~~lid~-~G~i~~~~ 454 (569)
|++.++|+++++|+ +|+++.+-
T Consensus 72 ~~~~~~P~~~~i~~~~g~~l~~~ 94 (114)
T cd02958 72 YKVDKYPHIAIIDPRTGEVLKVW 94 (114)
T ss_pred hCccCCCeEEEEeCccCcEeEEE
Confidence 99999999999999 89999873
No 259
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.51 E-value=5.1e-07 Score=74.97 Aligned_cols=64 Identities=31% Similarity=0.533 Sum_probs=56.9
Q ss_pred CcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC
Q 008336 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (569)
Q Consensus 197 gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~ 276 (569)
+++++++|+++||++|..+.+.+.+++++++++ +.|+.+|.++ ...+++.|+|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-----v~f~~vd~~~---------------------~~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-----LLFVVVDADD---------------------FGRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-----EEEEEEchHh---------------------hHHHHHHcCCC
Confidence 688999999999999999999999999999865 7777777765 56789999999
Q ss_pred --CCceEEEECC
Q 008336 277 --TLPTLVIIGP 286 (569)
Q Consensus 277 --~~Ptlvi~~~ 286 (569)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 8999999987
No 260
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.51 E-value=4e-07 Score=73.07 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 353 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.++.+.+-+..|+++||++|+...+.++++.+.+. ++.+..++.+..+ ++++.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~-----------------------e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQ-----------------------DEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCH-----------------------HHHHH
Confidence 35667888999999999999999999988887653 4788888877554 47899
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
|+|.++|++++ +|+++..
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 6888776
No 261
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.45 E-value=7e-07 Score=71.66 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
+.++.+. .+..|+++||++|+...+.+.++.+.+. ++.+..++.+... +++.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~------------------------e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQ------------------------DEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCH------------------------HHHH
Confidence 3467788 8888999999999999999999987753 4788888877653 4888
Q ss_pred hcCCCCccEEEEECCCCcEEEc
Q 008336 112 LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~ 133 (569)
.|+|.++|++++ +|+++..
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999974 6877663
No 262
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=9.6e-07 Score=76.58 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=84.4
Q ss_pred cccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC-------ChhHHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR-------DQTSFDEF 410 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~-------~~~~~~~~ 410 (569)
-+|.+ +.+|+.++|+.++||++||.--|+.|+.-...-..|++|+++|+++ +++|++..++. ..+++..+
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f 92 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNF 92 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHH
Confidence 36776 9999999999999999999999999999988888999999999987 79999999863 33566677
Q ss_pred HhcCCCcccccCc------hhhHHHHHhc----------CCCCccEEEEECCCCcEEEcc
Q 008336 411 FKGMPWLALPFGD------ARKASLSRKF----------KVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 411 ~~~~~~~~~~~~~------d~~~~l~~~~----------~v~~~Pt~~lid~~G~i~~~~ 454 (569)
+.......+|+.. +....+.+.+ .|..-=+-||+|++|+++.|.
T Consensus 93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry 152 (171)
T KOG1651|consen 93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRF 152 (171)
T ss_pred HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEee
Confidence 7644334445432 1112222222 122223678999999999984
No 263
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.44 E-value=4.8e-08 Score=60.73 Aligned_cols=29 Identities=45% Similarity=1.177 Sum_probs=14.3
Q ss_pred eeccCCCCCCCc-eeEEcCCCCCCcccccc
Q 008336 509 YSCDGCDEEGRV-WAFSCDECDFCLHPNCA 537 (569)
Q Consensus 509 ~~c~~C~~~g~~-~~~~~~~~~~~~~~~~~ 537 (569)
+.|+.|++.+.+ |.|+|.+|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999999 99999999999999996
No 264
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.41 E-value=1.1e-06 Score=73.50 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCEEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 357 GKTILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 357 gk~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
.+.+||.|+| |||+ + +|.+.+|+.++....+.+.|.-|+++.-.+ ..+.+|+.+|+
T Consensus 18 ~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~------------------~~~~~L~~~y~ 75 (116)
T cd03007 18 FKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGE------------------KLNMELGERYK 75 (116)
T ss_pred CCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccc------------------hhhHHHHHHhC
Confidence 5789999999 7777 2 244444444443221124555555542100 01357999999
Q ss_pred CC--CccEEEEECCCCc
Q 008336 435 VS--GIPMLVAIGPSGR 449 (569)
Q Consensus 435 v~--~~Pt~~lid~~G~ 449 (569)
|+ ++||+.++ ++|.
T Consensus 76 I~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 76 LDKESYPVIYLF-HGGD 91 (116)
T ss_pred CCcCCCCEEEEE-eCCC
Confidence 99 99999999 4553
No 265
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.38 E-value=1.1e-06 Score=69.73 Aligned_cols=63 Identities=25% Similarity=0.685 Sum_probs=44.5
Q ss_pred CCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
||+++|+|++.||++|+.+...+ .++.+.+..+ +..+.|..+.... .. .+
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~~~~----------------------~~--~~ 69 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDDEDP----------------------NA--QF 69 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTTHHH----------------------HH--HH
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCCCCh----------------------hH--Hh
Confidence 89999999999999999998876 3344445543 7777777654321 11 11
Q ss_pred CCCCccEEEEECC
Q 008336 434 KVSGIPMLVAIGP 446 (569)
Q Consensus 434 ~v~~~Pt~~lid~ 446 (569)
...++|+++|+||
T Consensus 70 ~~~~~P~~~~ldp 82 (82)
T PF13899_consen 70 DRQGYPTFFFLDP 82 (82)
T ss_dssp HHCSSSEEEEEET
T ss_pred CCccCCEEEEeCC
Confidence 1166999999986
No 266
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.37 E-value=1.6e-06 Score=81.74 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=66.5
Q ss_pred ccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 353 SDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 353 ~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
..+.++.-|++||.+.|+.|..+.|.|..+.+++ ++.|+.||+|.... ..||.... +..+++.
T Consensus 116 ~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~ 178 (215)
T PF13728_consen 116 KQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKR 178 (215)
T ss_pred HHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCC-----------cCCCCCCC-CHHHHHH
Confidence 3445788999999999999999999999999998 49999999996542 23333322 4457889
Q ss_pred cCCCCccEEEEECCCCcEEEc
Q 008336 433 FKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~~ 453 (569)
++|..+|+++|+++++.....
T Consensus 179 l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 179 LGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred cCCCcCCEEEEEECCCCeEEE
Confidence 999999999999998844443
No 267
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=4.4e-07 Score=93.36 Aligned_cols=69 Identities=30% Similarity=0.586 Sum_probs=57.0
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG 437 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 437 (569)
+.-+|.||++|||+|++++|.++++++.+..-..-+.|.+|++-+.. +..+||.|+|++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 57899999999999999999999999998765334566666654332 357999999999
Q ss_pred ccEEEEECCC
Q 008336 438 IPMLVAIGPS 447 (569)
Q Consensus 438 ~Pt~~lid~~ 447 (569)
+|++..+.++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999776
No 268
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.24 E-value=6.4e-06 Score=69.78 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=55.3
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.+.-++| ++|+|+++||++|+.+.... .++.+.+.+ ++.++.++++.... ..
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~----------------------~~ 67 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEG----------------------QR 67 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccH----------------------HH
Confidence 3445688 99999999999999986532 234444433 36666665553211 36
Q ss_pred HHHhcCCCCccEEEEECC-CCcEEEc
Q 008336 109 LDELFKVMGIPHLVILDE-NGKVLSD 133 (569)
Q Consensus 109 l~~~~~v~~~P~~~lid~-~G~i~~~ 133 (569)
++..|++.++|+++++|+ +|+++..
T Consensus 68 ~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 68 FLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHHhCccCCCeEEEEeCccCcEeEE
Confidence 888999999999999999 8988764
No 269
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.1e-06 Score=90.61 Aligned_cols=66 Identities=27% Similarity=0.501 Sum_probs=55.3
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (569)
.+|.||++|||||+++.|.+.++++.+..-. -+.|.+|+|-+... ..+|+.|+|+++
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N----------------------~~lCRef~V~~~ 117 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN----------------------VKLCREFSVSGY 117 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh----------------------hhhHhhcCCCCC
Confidence 8999999999999999999999999987654 35666666654432 479999999999
Q ss_pred cEEEEECCC
Q 008336 119 PHLVILDEN 127 (569)
Q Consensus 119 P~~~lid~~ 127 (569)
|++..+-++
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999665
No 270
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.22 E-value=5.2e-06 Score=79.58 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=66.1
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.++.-|++||.+.|+.|.++.|.|+.+.+++ ++.|+.||+|.... ..||.... +...++.+
T Consensus 147 ~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 209 (256)
T TIGR02739 147 QLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLI-----------PGLPNSRS-DSGQAQHL 209 (256)
T ss_pred HHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCccC-ChHHHHhc
Confidence 344678999999999999999999999999998 49999999997642 23444322 34568889
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+|..+|+++|++++.+....
T Consensus 210 ~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 210 GVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred CCccCceEEEEECCCCcEEE
Confidence 99999999999999654443
No 271
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.3e-06 Score=71.14 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=85.6
Q ss_pred cccCccCCcee--cCCC--ceeecCCCCCc-EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHH
Q 008336 14 LLSSSARDFLI--RSNG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (569)
Q Consensus 14 ~~g~~~pdf~~--~~~g--~~v~l~~~~gk-vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~ 87 (569)
.+..++|+|.. -.+| +.++|++++|| |++.|| ..+--.|..+.-.+...+.+|++.+ -+|+++|+|. .....
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n-~eVig~S~DS-~fshl 82 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN-TEVLGISTDS-VFSHL 82 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC-CeEEEEeccc-hhhhh
Confidence 45678899932 2344 68999999999 989888 5666689999999999999999874 8999999994 34444
Q ss_pred HHH---HhCC-Cc--ccccCCchhHHHHHHhcCCC------CccEEEEECCCCcEEEc
Q 008336 88 GYF---SKMP-WL--AVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (569)
Q Consensus 88 ~~~---~~~~-~~--~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~i~~~ 133 (569)
+|+ ++.+ .. .+|+..+ .+.++++.||+. .+-.++|||++|.+++.
T Consensus 83 AW~ntprk~gGlg~~~iPllsD-~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i 139 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSD-LNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI 139 (196)
T ss_pred hHhcCchhhCCcCccccceeec-cchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence 443 3433 22 2444322 235899999983 45678999999988774
No 272
>smart00594 UAS UAS domain.
Probab=98.18 E-value=1.2e-05 Score=68.92 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+|.++|+|+++||++|..+...+ .++.+.+.. ++.++.++++... ...++..
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~e---------------------g~~l~~~ 81 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSE---------------------GQRVSQF 81 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChh---------------------HHHHHHh
Confidence 389999999999999999987753 223344432 3555555544332 2468999
Q ss_pred cCCCCccEEEEECCCC
Q 008336 433 FKVSGIPMLVAIGPSG 448 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G 448 (569)
|+++++|++++++++|
T Consensus 82 ~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 82 YKLDSFPYVAIVDPRT 97 (122)
T ss_pred cCcCCCCEEEEEecCC
Confidence 9999999999999998
No 273
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.17 E-value=4.7e-06 Score=65.97 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=33.2
Q ss_pred CCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCC
Q 008336 36 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDED 82 (569)
Q Consensus 36 ~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~ 82 (569)
-+|| ++|+|+|+||++|+.+...+ .++.+.+.+ ++..+.|+.+..
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~ 63 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDE 63 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTH
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCC
Confidence 3588 99999999999999997766 334343442 478888887644
No 274
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.16 E-value=1.4e-05 Score=66.04 Aligned_cols=60 Identities=27% Similarity=0.460 Sum_probs=54.8
Q ss_pred ccee-cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC
Q 008336 340 DFVV-GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR 402 (569)
Q Consensus 340 ~f~~-~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~ 402 (569)
+|.+ +.+|+.++++.++||++||.-.|+-|+.-. ....|++++++|+++ +++|+++.++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 4666 899999999999999999999999999988 888999999999977 79999999864
No 275
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.16 E-value=7.1e-06 Score=78.18 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=64.1
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
++.++.-|++||.+.|+.|.++.|.|+.+.+++ ++.|+.||+|.... ..||.... +...+..+
T Consensus 140 ~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 202 (248)
T PRK13703 140 KLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQRL 202 (248)
T ss_pred HHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCC-----------CCCCCCcc-ChhHHHhc
Confidence 344678899999999999999999999999998 48999999997532 23444322 23355789
Q ss_pred CCCCccEEEEECCCCcEEE
Q 008336 434 KVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~ 452 (569)
+|..+|+++|++++.+-..
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred CCcccceEEEEECCCCcEE
Confidence 9999999999999864433
No 276
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.4e-05 Score=66.85 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=94.3
Q ss_pred cCCcccee-cCCCCceecccCCCCEEEEEEe-cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhc
Q 008336 336 SGDLDFVV-GKNGGKVPVSDLAGKTILLYFS-AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKG 413 (569)
Q Consensus 336 ~~~~~f~~-~~~g~~v~l~~~~gk~vll~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~ 413 (569)
...|+|++ +.+.+.+++.++.||..+|..+ +-.-|.|..+...+++.+.++. +..|+.||+| .+-+.++|...
T Consensus 22 d~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~----~~~Vl~IS~D-LPFAq~RfC~a 96 (158)
T COG2077 22 DKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG----NTVVLCISMD-LPFAQKRFCGA 96 (158)
T ss_pred CcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC----CcEEEEEeCC-ChhHHhhhhhh
Confidence 34689988 9999999999999986666555 6677889999999998888775 4789999999 56788899998
Q ss_pred CCCcccccCch-hhHHHHHhcCCC--Cc-------cEEEEECCCCcEEEccchh
Q 008336 414 MPWLALPFGDA-RKASLSRKFKVS--GI-------PMLVAIGPSGRTITKEARD 457 (569)
Q Consensus 414 ~~~~~~~~~~d-~~~~l~~~~~v~--~~-------Pt~~lid~~G~i~~~~~~~ 457 (569)
.+.-+...++| ++..+.+.|||. .- .+.+++|.+|+|++...-.
T Consensus 97 eGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~ 150 (158)
T COG2077 97 EGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVP 150 (158)
T ss_pred cCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccc
Confidence 88776766666 456788999863 33 4789999999999986543
No 277
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.5e-05 Score=68.47 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=81.0
Q ss_pred cCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHHHH
Q 008336 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGY 89 (569)
Q Consensus 19 ~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~~~ 89 (569)
.-|| ..+.+|++++|++++|| +||.-.||-|+.-. +-..|+.++++|+++| +.|+++.++ .+.+.+.+|
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G-f~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG-FEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred cccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC-cEEEeccccccccCCCCCHHHHHHH
Confidence 3466 45689999999999999 88889999999877 5678999999999998 999999886 356788888
Q ss_pred HHh-CCCcccccC----CchhHHHHHHhcC-----------CCCccEEEEECCCCcEEEcC
Q 008336 90 FSK-MPWLAVPFS----DSETRDKLDELFK-----------VMGIPHLVILDENGKVLSDG 134 (569)
Q Consensus 90 ~~~-~~~~~~~~~----~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~i~~~~ 134 (569)
... ++..++.+. .......+.+.+. |..-=+-||||++|+|+.+-
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 774 444433321 1111122322221 22223569999999998753
No 278
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.14 E-value=7.8e-06 Score=77.12 Aligned_cols=83 Identities=28% Similarity=0.336 Sum_probs=64.5
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (569)
-.+..+.++ -|++||.+.|++|+.+.|.|..+++++ .+.|+.||+|...- . .+.+......+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~-----------~--~fp~~~~~~g~ 175 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPI-----------P--SFPNPRPDPGQ 175 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCC-----------c--CCCCCCCCHHH
Confidence 344566777 899999999999999999999999998 39999999996421 1 12222123468
Q ss_pred HHhcCCCCccEEEEECCCCcE
Q 008336 110 DELFKVMGIPHLVILDENGKV 130 (569)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~i 130 (569)
.+.++|..+|+++|+++++..
T Consensus 176 ~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 176 AKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred HHHcCCCcCCEEEEEECCCCe
Confidence 889999999999999988733
No 279
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.8e-05 Score=67.74 Aligned_cols=137 Identities=18% Similarity=0.292 Sum_probs=105.9
Q ss_pred cCCccceecCCCCceecccCCCCEEEEEEe--cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCC--hhHH----
Q 008336 336 SGDLDFVVGKNGGKVPVSDLAGKTILLYFS--AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRD--QTSF---- 407 (569)
Q Consensus 336 ~~~~~f~~~~~g~~v~l~~~~gk~vll~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~--~~~~---- 407 (569)
...|+|..+..-.++.+.++.|..+.|.|. +...|.|..++..+.+++.+|..+ ++..++.|+|.- ...|
T Consensus 10 d~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR--nvKlialS~d~vesH~~Wi~DI 87 (224)
T KOG0854|consen 10 DTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR--NVKLIALSVDDVESHKDWIKDI 87 (224)
T ss_pred CcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc--CceEEEeehhhHHHHHHHHHHH
Confidence 445889887778889999999998888898 557889999999999999999877 799999999954 2233
Q ss_pred HHHHhcCC-CcccccCchhhHHHHHhcCCC--------C----ccEEEEECCCCcEEEccchhhHhhcCCCCCC-CCHHH
Q 008336 408 DEFFKGMP-WLALPFGDARKASLSRKFKVS--------G----IPMLVAIGPSGRTITKEARDMIAVHGAEAYP-FTEER 473 (569)
Q Consensus 408 ~~~~~~~~-~~~~~~~~d~~~~l~~~~~v~--------~----~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p-~~~~~ 473 (569)
+.|.+..+ -+.||+..|++.+++-.|+.- + ...+++||++.+|+-.-. || -++++
T Consensus 88 ks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l-----------YP~ttGRN 156 (224)
T KOG0854|consen 88 KSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL-----------YPSTTGRN 156 (224)
T ss_pred HHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE-----------cccccCcC
Confidence 33333332 378899999999999888642 2 457899999999987621 23 35678
Q ss_pred HHHHHHHhhhhh
Q 008336 474 MKEIDGQYNEMA 485 (569)
Q Consensus 474 ~~~l~~~l~~l~ 485 (569)
.++++..|+.|.
T Consensus 157 ~dEiLRvidsLq 168 (224)
T KOG0854|consen 157 FDEILRVIDSLQ 168 (224)
T ss_pred HHHHHHHHHHHh
Confidence 889988888765
No 280
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.08 E-value=8.7e-06 Score=70.13 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=46.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
..+.-++.|..+|||.|+...|.|.++++..+ ++.+-.+..|.+.+ .++++ + ..|.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~e----l~~~~--------------l--t~g~ 95 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKE----LMDQY--------------L--TNGG 95 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHH----HTTTT--------------T--T-SS
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChh----HHHHH--------------H--hCCC
Confidence 46788899999999999999999999988754 36776666665432 11111 1 1578
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
+.+|+++++|.+|+.+.+-+
T Consensus 96 ~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 96 RSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp --SSEEEEE-TT--EEEEEE
T ss_pred eecCEEEEEcCCCCEeEEEc
Confidence 89999999999999988743
No 281
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.05 E-value=0.00018 Score=78.49 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=103.4
Q ss_pred ccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcc
Q 008336 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (569)
Q Consensus 195 ~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~ 274 (569)
++.+..+.+|..+.|+.|.++...+.+++ ++. +.+.+.+..... .+.+++.|+
T Consensus 364 l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s---~~i~~~~~~~~~-----------------------~~~~~~~~~ 416 (555)
T TIGR03143 364 LENPVTLLLFLDGSNEKSAELQSFLGEFA-SLS---EKLNSEAVNRGE-----------------------EPESETLPK 416 (555)
T ss_pred cCCCEEEEEEECCCchhhHHHHHHHHHHH-hcC---CcEEEEEecccc-----------------------chhhHhhcC
Confidence 56666777788877778877766665554 232 334343333322 346778999
Q ss_pred cCCCceEEEECCCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHH-HHhhhhhhhhhccCCccceecCCCCceecc
Q 008336 275 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA-KEESQTLESVLVSGDLDFVVGKNGGKVPVS 353 (569)
Q Consensus 275 v~~~Ptlvi~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~g~~v~l~ 353 (569)
++..|++++++.+|+.. .|.++|+.. .. .+..|+..-.. +...+.+.... .-.+.
T Consensus 417 v~~~P~~~i~~~~~~~~------~i~f~g~P~---G~-Ef~s~i~~i~~~~~~~~~l~~~~--------------~~~i~ 472 (555)
T TIGR03143 417 ITKLPTVALLDDDGNYT------GLKFHGVPS---GH-ELNSFILALYNAAGPGQPLGEEL--------------LEKIK 472 (555)
T ss_pred CCcCCEEEEEeCCCccc------ceEEEecCc---cH-hHHHHHHHHHHhcCCCCCCCHHH--------------HHHHH
Confidence 99999999997555421 133444332 11 12222221111 00001110000 00122
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.++.-+-.|.+++|+.|......+++++.... ++..-.|.....+ +++..|
T Consensus 473 ~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~~~-----------------------~~~~~~ 525 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSHFP-----------------------DLKDEY 525 (555)
T ss_pred hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcccH-----------------------HHHHhC
Confidence 3335555667789999999988887777666643 4666666665544 588899
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+|.++|++++ ||+++..
T Consensus 526 ~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 526 GIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred CceecCEEEE---CCEEEEe
Confidence 9999999987 4666655
No 282
>smart00594 UAS UAS domain.
Probab=98.04 E-value=2.3e-05 Score=67.22 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=53.6
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 106 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (569)
+..+.-.+| ++|+|+++||+.|..+.... .++.+.+.. ++.++.++++....
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg---------------------- 75 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEG---------------------- 75 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhH----------------------
Confidence 344555789 99999999999999986553 233334432 36666666654322
Q ss_pred HHHHHhcCCCCccEEEEECCCC
Q 008336 107 DKLDELFKVMGIPHLVILDENG 128 (569)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G 128 (569)
..++..|++.++|++.+++++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 3688999999999999999887
No 283
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.02 E-value=3.1e-06 Score=52.44 Aligned_cols=29 Identities=38% Similarity=0.900 Sum_probs=27.0
Q ss_pred eeccCCCCCCCce-eEEcCCCCCCcccccc
Q 008336 509 YSCDGCDEEGRVW-AFSCDECDFCLHPNCA 537 (569)
Q Consensus 509 ~~c~~C~~~g~~~-~~~~~~~~~~~~~~~~ 537 (569)
+.|+.|.+...+. .|+|++|+|.||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4799999999888 9999999999999997
No 284
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.02 E-value=2.1e-05 Score=66.24 Aligned_cols=68 Identities=38% Similarity=0.710 Sum_probs=53.2
Q ss_pred ecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC-CChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 351 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD-RDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 351 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
....+.++++++.||++||++|+.++|.+.++++++.. .+.++.++.. ..+ .+
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~-----------------------~~ 79 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENP-----------------------DL 79 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCCh-----------------------HH
Confidence 33334488999999999999999999999999999865 3778888875 232 35
Q ss_pred HHhcC--CCCccEEEEE
Q 008336 430 SRKFK--VSGIPMLVAI 444 (569)
Q Consensus 430 ~~~~~--v~~~Pt~~li 444 (569)
...|+ +..+|+++++
T Consensus 80 ~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 80 AAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHhhhhccCCeEEEE
Confidence 66677 8888998865
No 285
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.00 E-value=3.6e-05 Score=56.85 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=48.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.||++||++|.+..+.+.++ ..... ++.++.++++....... ....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK-GVKFEAVDVDEDPALEK---------------------ELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC-CcEEEEEEcCCChHHhh---------------------HHHhCCCccccE
Confidence 5789999999999999999998 33333 58999999987654211 135688999999
Q ss_pred EEEECCC
Q 008336 121 LVILDEN 127 (569)
Q Consensus 121 ~~lid~~ 127 (569)
+++++.+
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999765
No 286
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.99 E-value=3.5e-05 Score=56.86 Aligned_cols=63 Identities=30% Similarity=0.657 Sum_probs=48.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.||+.||++|++..+.+.++ .... .++.++.++++...... .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLN--KGVKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhC--CCcEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 5789999999999999999988 2222 36899999988764311 1135789999999
Q ss_pred EEEECCC
Q 008336 441 LVAIGPS 447 (569)
Q Consensus 441 ~~lid~~ 447 (569)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999766
No 287
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=2.8e-05 Score=65.44 Aligned_cols=69 Identities=39% Similarity=0.699 Sum_probs=53.4
Q ss_pred eeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-CCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 30 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
.......+++ +++.||++||++|+.++|.+.++.+++.. .+.++.++.. ...
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~------------------------ 77 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENP------------------------ 77 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCCh------------------------
Confidence 3444445588 99999999999999999999999999875 3778888886 232
Q ss_pred HHHHhcC--CCCccEEEEE
Q 008336 108 KLDELFK--VMGIPHLVIL 124 (569)
Q Consensus 108 ~l~~~~~--v~~~P~~~li 124 (569)
.+...|+ +..+|+++++
T Consensus 78 ~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHHHhhhhccCCeEEEE
Confidence 3556666 7888988755
No 288
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.4e-05 Score=67.16 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=82.5
Q ss_pred CccCCc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC-------CCHHHHH
Q 008336 17 SSARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (569)
Q Consensus 17 ~~~pdf-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d-------~~~~~~~ 87 (569)
...-+| ..+.+|+.++|+.++|| +||.--||.|+.=...-.+|+.++++|++.| ++|++..|+ ...+++.
T Consensus 12 ~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G-l~ILaFPCNQFg~QEp~~n~Ei~ 90 (171)
T KOG1651|consen 12 GSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG-LEILAFPCNQFGNQEPGSNEEIL 90 (171)
T ss_pred cceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC-eEEEEeccccccCcCCCCcHHHH
Confidence 344567 45789999999999999 8888899999998877889999999999997 999999886 2445677
Q ss_pred HHHHh-CCCcccccC----CchhHHHHHHhcC----------CCCccEEEEECCCCcEEEcCC
Q 008336 88 GYFSK-MPWLAVPFS----DSETRDKLDELFK----------VMGIPHLVILDENGKVLSDGG 135 (569)
Q Consensus 88 ~~~~~-~~~~~~~~~----~~~~~~~l~~~~~----------v~~~P~~~lid~~G~i~~~~~ 135 (569)
.++.. .+..+..+. ..+....+.+.+. |..-=+-||+|++|+++.+-+
T Consensus 91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 77753 333222221 1111223333222 222234599999999998644
No 289
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.94 E-value=2.3e-05 Score=75.25 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=64.0
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.+..+.++ -|++||.+.|++|.++.|.+..++++++ +.|+.||+|.... ..++ +......++
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 206 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLI-----------PGLP--NSRSDSGQA 206 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCC-----------CCCC--CccCChHHH
Confidence 44556677 8999999999999999999999999983 9999999996521 1122 111223578
Q ss_pred HhcCCCCccEEEEECCCCcEE
Q 008336 111 ELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~i~ 131 (569)
+.+++..+|+++|++++.+..
T Consensus 207 ~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhcCCccCceEEEEECCCCcE
Confidence 899999999999999885433
No 290
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.90 E-value=0.00027 Score=77.24 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=103.0
Q ss_pred CCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 34 ~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
..+++. .|+.|+.+.|..|..+...|.+++ .+.+ .+.+...+...+ ..+.+.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~--~i~~~~~~~~~~------------------------~~~~~~ 414 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSE--KLNSEAVNRGEE------------------------PESETL 414 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCC--cEEEEEeccccc------------------------hhhHhh
Confidence 456778 788899988999988877777776 4444 366665555433 247789
Q ss_pred cCCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceee-
Q 008336 113 FKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKIS- 191 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~- 191 (569)
|++...|++.+++.+|+- .+ ++-+|... -.++..|+..- +....... ..+.+...
T Consensus 415 ~~v~~~P~~~i~~~~~~~---~~---i~f~g~P~----G~Ef~s~i~~i------------~~~~~~~~--~l~~~~~~~ 470 (555)
T TIGR03143 415 PKITKLPTVALLDDDGNY---TG---LKFHGVPS----GHELNSFILAL------------YNAAGPGQ--PLGEELLEK 470 (555)
T ss_pred cCCCcCCEEEEEeCCCcc---cc---eEEEecCc----cHhHHHHHHHH------------HHhcCCCC--CCCHHHHHH
Confidence 999999999999766631 01 12223221 12222333211 00000000 00111110
Q ss_pred eccccCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHh
Q 008336 192 VSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (569)
Q Consensus 192 ~~~~~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 271 (569)
+..++++..+..|..++||.|......+.+++.... +++.-++.... ++.+++
T Consensus 471 i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~----~i~~~~i~~~~-----------------------~~~~~~ 523 (555)
T TIGR03143 471 IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP----NVEAEMIDVSH-----------------------FPDLKD 523 (555)
T ss_pred HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC----CceEEEEECcc-----------------------cHHHHH
Confidence 112455666777899999999987777766665532 33344443322 568889
Q ss_pred hcccCCCceEEEE
Q 008336 272 YFELSTLPTLVII 284 (569)
Q Consensus 272 ~f~v~~~Ptlvi~ 284 (569)
.|+|.++|++++-
T Consensus 524 ~~~v~~vP~~~i~ 536 (555)
T TIGR03143 524 EYGIMSVPAIVVD 536 (555)
T ss_pred hCCceecCEEEEC
Confidence 9999999999874
No 291
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.88 E-value=9.6e-06 Score=69.86 Aligned_cols=77 Identities=32% Similarity=0.595 Sum_probs=46.0
Q ss_pred cCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHH
Q 008336 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (569)
++.+.++ .++.|..+|||.|++..|.|.++++..+ ++.+-.+..|++.+...+| +
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~-------------------l-- 91 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQY-------------------L-- 91 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTT-------------------T--
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHH-------------------H--
Confidence 4455666 8888999999999999999999998743 4667666666554421111 1
Q ss_pred hcCCCCccEEEEECCCCcEEEc
Q 008336 112 LFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 112 ~~~v~~~P~~~lid~~G~i~~~ 133 (569)
..|...+|+++++|++|+.+..
T Consensus 92 t~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 92 TNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp T-SS--SSEEEEE-TT--EEEE
T ss_pred hCCCeecCEEEEEcCCCCEeEE
Confidence 1578899999999999988753
No 292
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00022 Score=61.26 Aligned_cols=84 Identities=25% Similarity=0.473 Sum_probs=61.7
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCc----hhhHH
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGD----ARKAS 428 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~----d~~~~ 428 (569)
.+|+.++.|-.+.|+.|.++...+ .++.+-+++. +.++-+.+..... ..+-.+. -...+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skp-----------v~f~~g~kee~~s~~E 106 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKP-----------VLFKVGDKEEKMSTEE 106 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcc-----------eEeecCceeeeecHHH
Confidence 489999999999999999987765 3455666654 7777776643321 1111111 12358
Q ss_pred HHHhcCCCCccEEEEECCCCcEEEc
Q 008336 429 LSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 429 l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+++.|+|+++|+++++|++|+.+..
T Consensus 107 La~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 107 LAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHhccccCceEEEEcCCCCEEEe
Confidence 9999999999999999999998886
No 293
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.87 E-value=3.1e-05 Score=73.88 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=61.9
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHH
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (569)
.+.++.++ -|++||.+.|++|.++.|.+..++++++ +.|+.||+|.... +.++ +........
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG~~~-----------p~fp--~~~~d~gqa 199 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDGVIN-----------PLLP--DSRTDQGQA 199 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCC-----------CCCC--CCccChhHH
Confidence 35566677 8999999999999999999999999983 8999999996421 1122 111222456
Q ss_pred HhcCCCCccEEEEECCCC
Q 008336 111 ELFKVMGIPHLVILDENG 128 (569)
Q Consensus 111 ~~~~v~~~P~~~lid~~G 128 (569)
+.++|..+|+++|++++.
T Consensus 200 ~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 200 QRLGVKYFPALMLVDPKS 217 (248)
T ss_pred HhcCCcccceEEEEECCC
Confidence 889999999999999875
No 294
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.86 E-value=7.8e-05 Score=62.67 Aligned_cols=78 Identities=27% Similarity=0.611 Sum_probs=49.8
Q ss_pred CCEEEEEEec-------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 357 GKTILLYFSA-------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 357 gk~vll~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
+++++|+|++ +|||.|++..|.+++......+ +..+|.+.+... ..|+ +++..+
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r-~~Wk---------------dp~n~f 79 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDR-PEWK---------------DPNNPF 79 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---H-HHHC----------------TTSHH
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCH-HHhC---------------CCCCCc
Confidence 6788888884 4999999999999988777544 377787777532 3332 223345
Q ss_pred HH--hcCCCCccEEEEECCCCcEEEc
Q 008336 430 SR--KFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 430 ~~--~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
.. .++++++||++-++..++++..
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp HH--CC---SSSEEEECTSS-EEEHH
T ss_pred eEcceeeeeecceEEEECCCCccchh
Confidence 44 6999999999999766565443
No 295
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.85 E-value=0.00038 Score=64.27 Aligned_cols=171 Identities=21% Similarity=0.344 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC-CCcEEEc
Q 008336 55 FTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE-NGKVLSD 133 (569)
Q Consensus 55 ~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~-~G~i~~~ 133 (569)
+...+.++++.+... +.+..+. + ..+++.+++.. |+++++.+ +++....
T Consensus 8 ~~~~f~~~A~~~~~~--~~F~~~~---~------------------------~~~~~~~~~~~-p~i~~~k~~~~~~~~y 57 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGD--YQFGVTF---N------------------------EELAKKYGIKE-PTIVVYKKFDEKPVVY 57 (184)
T ss_dssp HHHHHHHHHHHHTTT--SEEEEEE----------------------------HHHHHHCTCSS-SEEEEEECTTTSEEEE
T ss_pred HHHHHHHHHHhCcCC--cEEEEEc---H------------------------HHHHHHhCCCC-CcEEEeccCCCCceec
Confidence 456777888888643 5555443 1 25788899998 99999965 2333332
Q ss_pred CCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCceeecCCCceeeeccccCcE-EEEEEecCCcccc
Q 008336 134 GGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKISVSDLEGKT-IGLYFSMSSYKAS 212 (569)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~gk~-v~l~f~~~~~~~c 212 (569)
.+. .++.+.|..++ .....|.+...+.+++......++. ++++|........
T Consensus 58 ~~~-----------~~~~~~l~~fI----------------~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~ 110 (184)
T PF13848_consen 58 DGD-----------KFTPEELKKFI----------------KKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNEST 110 (184)
T ss_dssp SSS-----------TTSHHHHHHHH----------------HHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHH
T ss_pred ccc-----------cCCHHHHHHHH----------------HHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhH
Confidence 221 24555555544 3345555655556555554445544 6677766555666
Q ss_pred hhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC--CCceEEEECCCC-C
Q 008336 213 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG-K 289 (569)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~--~~Ptlvi~~~~g-~ 289 (569)
..+...+.+++.+++++ +.|+.+|.+. ..++++.||++ .+|++++++... +
T Consensus 111 ~~~~~~l~~~a~~~~~~-----~~f~~~d~~~---------------------~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 111 EAFKKELQDIAKKFKGK-----INFVYVDADD---------------------FPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp HHHHHHHHHHHHCTTTT-----SEEEEEETTT---------------------THHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred HHHHHHHHHHHHhcCCe-----EEEEEeehHH---------------------hHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 77777888888887655 5566666543 45678899998 799999998543 3
Q ss_pred chhhhhHHHHHhhCCCCCCCChHHHHHHHH
Q 008336 290 TLHSNVAEAIEEHGVGAFPFTPEKFAELAE 319 (569)
Q Consensus 290 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 319 (569)
+.+.. ..+++.+.+.+|.+
T Consensus 165 ~~~~~-----------~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 165 YYYLP-----------EGEITPESIEKFLN 183 (184)
T ss_dssp EEE-------------SSCGCHHHHHHHHH
T ss_pred EEcCC-----------CCCCCHHHHHHHhc
Confidence 22210 12678888888875
No 296
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.84 E-value=8.5e-05 Score=65.82 Aligned_cols=79 Identities=16% Similarity=0.370 Sum_probs=40.7
Q ss_pred CCEEEEEEecCCChhHHhhhHH-H--HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPK-L--IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+|+|+|.++++||.+|..|... + .++++.+... |.-|.|+.+..++ ++.....+ .....
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pd-id~~y~~~--------------~~~~~ 98 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPD-IDKIYMNA--------------VQAMS 98 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HH-HHHHHHHH--------------HHHHH
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCcc-HHHHHHHH--------------HHHhc
Confidence 8999999999999999998763 2 2234444332 4444444443332 21111110 11123
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
+..|+|++++++|+|+.++.
T Consensus 99 ~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp S---SSEEEEE-TTS-EEEE
T ss_pred CCCCCCceEEECCCCCeeee
Confidence 78899999999999999886
No 297
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.78 E-value=0.00012 Score=68.32 Aligned_cols=135 Identities=19% Similarity=0.368 Sum_probs=90.2
Q ss_pred cccCccCCc-eecCCCce-eecCCC-C-Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEe----CC----
Q 008336 14 LLSSSARDF-LIRSNGDQ-VKLDSL-K-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS----GD---- 80 (569)
Q Consensus 14 ~~g~~~pdf-~~~~~g~~-v~l~~~-~-gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~----~d---- 80 (569)
.+|.+|||. +++++|+. .++.++ + ++ ++|+|-+-.||+=+.-++.+++++++|.+.-++.+|.|. .|
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccC
Confidence 579999999 78899988 999998 4 45 999999988999999999999999999875456666662 11
Q ss_pred ----------C---CH-HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECCCCcEEEcCCcceeecccCCC
Q 008336 81 ----------E---DD-EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEG 146 (569)
Q Consensus 81 ----------~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~ 146 (569)
. ++ ..++...++. .....+.|.- .....+.||..-- .++|| .+|+|++.+| ...
T Consensus 154 ~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~m-dN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg--------~GP 221 (237)
T PF00837_consen 154 GNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTM-DNNFNKAYGALPE-RLYII-QDGKVVYKGG--------PGP 221 (237)
T ss_pred CCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEcc-CCHHHHHhCCCcc-eEEEE-ECCEEEEeCC--------CCC
Confidence 0 11 1233333333 2222233333 3456677876422 24555 6899998755 233
Q ss_pred CCccHHHHHHHHHH
Q 008336 147 YPFTVERIKEMKEQ 160 (569)
Q Consensus 147 ~~~~~~~i~~~~~~ 160 (569)
+-+..+++++.+++
T Consensus 222 ~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 222 FGYSPEELREWLEK 235 (237)
T ss_pred CcCCHHHHHHHHHh
Confidence 44567777776654
No 298
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=97.75 E-value=0.00017 Score=59.69 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=52.6
Q ss_pred Cc-eecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 21 df-~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
+| ..+++|+.++++.++|| +||.=-|+-|+.-. ....|++++++|+++| ++|+++.++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g-l~ILaFPcn 62 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG-LEILAFPCN 62 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT-EEEEEEEBS
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC-eEEEeeehH
Confidence 46 45789999999999999 88888999999888 8889999999999887 999999886
No 299
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.73 E-value=0.00026 Score=54.24 Aligned_cols=59 Identities=19% Similarity=0.539 Sum_probs=43.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|+++||++|++..+.|.+ . ++.+..++++.++.. ..++.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~--~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K--GIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C--CCeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999999887754 1 367777777765431 124667789999999
Q ss_pred EEEECCCCcE
Q 008336 441 LVAIGPSGRT 450 (569)
Q Consensus 441 ~~lid~~G~i 450 (569)
+++- |++
T Consensus 54 ~~~~---~~~ 60 (74)
T TIGR02196 54 IVIG---HKI 60 (74)
T ss_pred EEEC---CEE
Confidence 9873 555
No 300
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00024 Score=62.09 Aligned_cols=114 Identities=19% Similarity=0.326 Sum_probs=83.6
Q ss_pred ccCccCCceecCCCceeecCCCCCc-EEEEEe--cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHH
Q 008336 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (569)
Q Consensus 15 ~g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~--a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~ 91 (569)
+|+.+|+|..+..-..+++.++.|. +.|.|. |...|.|..++..+++++-+|..++ +.++++|+|. .+....|++
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn-vKlialS~d~-vesH~~Wi~ 85 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN-VKLIALSVDD-VESHKDWIK 85 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC-ceEEEeehhh-HHHHHHHHH
Confidence 7999999988877677999999999 888886 6788999999999999999999885 9999999994 333333332
Q ss_pred -------hCC--CcccccCCchhHHHHHHhcCCC--------C----ccEEEEECCCCcEEE
Q 008336 92 -------KMP--WLAVPFSDSETRDKLDELFKVM--------G----IPHLVILDENGKVLS 132 (569)
Q Consensus 92 -------~~~--~~~~~~~~~~~~~~l~~~~~v~--------~----~P~~~lid~~G~i~~ 132 (569)
..+ ..++.+.|. ..+++-.|+.. + ...++++|++.+++-
T Consensus 86 DIks~~~~~~~~~~yPIIaD~--~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirL 145 (224)
T KOG0854|consen 86 DIKSYAKVKNHSVPYPIIADP--NRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRL 145 (224)
T ss_pred HHHHHHhccCCCCCCCeecCC--chhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEE
Confidence 222 222222332 34676666642 2 346799999988864
No 301
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.65 E-value=0.00022 Score=54.69 Aligned_cols=55 Identities=22% Similarity=0.549 Sum_probs=41.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..|+++||++|++..+.|.+ . ++.+..++++.+.+. ...+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~-~i~~~~vdi~~~~~~--------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K-GIAFEEIDVEKDSAA--------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C-CCeEEEEeccCCHHH--------------------HHHHHHHhCCCcccE
Confidence 467999999999998877754 2 377888888766442 124667789999998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 876
No 302
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.61 E-value=0.00019 Score=56.90 Aligned_cols=65 Identities=26% Similarity=0.498 Sum_probs=45.4
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++|||+|++..+.|.++. +. +.+.++-|+.+.+....++ .+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~-------------------~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQD-------------------YLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHH-------------------HHHHHhCCCCCCe
Confidence 46799999999999999998875 22 1367777777655443322 3566788999999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 58 v~i---~g~~i 65 (84)
T TIGR02180 58 IFI---NGKFI 65 (84)
T ss_pred EEE---CCEEE
Confidence 754 45443
No 303
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.60 E-value=7.2e-05 Score=78.43 Aligned_cols=77 Identities=19% Similarity=0.395 Sum_probs=54.4
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHH-HHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLI-DAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK 434 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~-~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~ 434 (569)
++|+|+|+|||.||-.|+.+.+..- +.....+-. ++..+-+++..+. ....++.++|+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~--~~vlLqaDvT~~~-------------------p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ--DVVLLQADVTAND-------------------PAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC--CeEEEEeeecCCC-------------------HHHHHHHHHcC
Confidence 4569999999999999999988654 333333322 4555555544332 12456788999
Q ss_pred CCCccEEEEECCCCcEEEc
Q 008336 435 VSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 435 v~~~Pt~~lid~~G~i~~~ 453 (569)
+-+.|++++++++|+-...
T Consensus 532 ~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred CCCCCEEEEECCCCCcCcC
Confidence 9999999999999875443
No 304
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.58 E-value=0.00064 Score=58.18 Aligned_cols=90 Identities=9% Similarity=0.112 Sum_probs=63.6
Q ss_pred EEEEEEec--CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 359 TILLYFSA--HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 359 ~vll~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
..+|.|-+ ..++-+....=.|.+++++|.+. ++.++.|++|.++ .++..|+|+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~--~v~~akVDiD~~~-----------------------~LA~~fgV~ 90 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY--TWQVAIADLEQSE-----------------------AIGDRFGVF 90 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC--ceEEEEEECCCCH-----------------------HHHHHcCCc
Confidence 44444442 23555666777788888888632 3888888888776 599999999
Q ss_pred CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 008336 437 GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 488 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~ 488 (569)
++||++++ ++|+++.+..+- ...++|.+.|++++...
T Consensus 91 siPTLl~F-kdGk~v~~i~G~--------------~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 91 RFPATLVF-TGGNYRGVLNGI--------------HPWAELINLMRGLVEPQ 127 (132)
T ss_pred cCCEEEEE-ECCEEEEEEeCc--------------CCHHHHHHHHHHHhcCc
Confidence 99999999 899999884321 11255677777776543
No 305
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.54 E-value=0.00019 Score=56.88 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=45.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++|||+|++..+.|.++. +.. .+.++-|+.+.+...+. ..+.+.+++..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999998765 322 26777777664433221 23566788999999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 58 v~-i--~g~~i 65 (84)
T TIGR02180 58 IF-I--NGKFI 65 (84)
T ss_pred EE-E--CCEEE
Confidence 85 4 45544
No 306
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.52 E-value=0.00035 Score=54.23 Aligned_cols=62 Identities=24% Similarity=0.525 Sum_probs=40.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh-cCCCCcc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL-FKVMGIP 119 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~P 119 (569)
++.||++||++|++..+.|.++ + +.+-.++++.+.... ..+... +++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~-~~~~~idi~~~~~~~--------------------~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G-AAYEWVDIEEDEGAA--------------------DRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C-CceEEEeCcCCHhHH--------------------HHHHHHhCCCceeC
Confidence 5679999999999998887654 2 445566777554311 112222 5889999
Q ss_pred EEEEECCCCcEEE
Q 008336 120 HLVILDENGKVLS 132 (569)
Q Consensus 120 ~~~lid~~G~i~~ 132 (569)
++ ++ .+|+++.
T Consensus 54 ~i-~~-~~g~~l~ 64 (77)
T TIGR02200 54 TV-KF-ADGSFLT 64 (77)
T ss_pred EE-EE-CCCeEec
Confidence 86 45 4676654
No 307
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.51 E-value=0.00051 Score=53.27 Aligned_cols=63 Identities=13% Similarity=0.336 Sum_probs=40.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH-hcCCCCcc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR-KFKVSGIP 439 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~P 439 (569)
+..||++||++|++..+.|.++. +.+-.++++.+... ...+.+ .+++.++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 56799999999999999875431 33345666655321 011222 25889999
Q ss_pred EEEEECCCCcEEEc
Q 008336 440 MLVAIGPSGRTITK 453 (569)
Q Consensus 440 t~~lid~~G~i~~~ 453 (569)
++ ++ .+|+++..
T Consensus 54 ~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 54 TV-KF-ADGSFLTN 65 (77)
T ss_pred EE-EE-CCCeEecC
Confidence 97 45 46777665
No 308
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00083 Score=57.76 Aligned_cols=87 Identities=25% Similarity=0.439 Sum_probs=60.3
Q ss_pred ecCCCCCc-EEEEEecCCCHhhHhhHHHHH---HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccC-----C
Q 008336 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS-----D 102 (569)
Q Consensus 32 ~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~---~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~-----~ 102 (569)
.+....+| .++.|-++.|++|.++...+. ++.+.+.. .+.++.++...... +.+. .
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skp-------------v~f~~g~kee 100 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKP-------------VLFKVGDKEE 100 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcc-------------eEeecCceee
Confidence 44556789 999999999999998866553 34444443 37777776653321 1111 1
Q ss_pred chhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
....+++++.|+++++|+++++|.+|+.+..
T Consensus 101 ~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 101 KMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 1123589999999999999999999987653
No 309
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.44 E-value=0.0002 Score=75.12 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=54.8
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHH-HHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHh
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILA-EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~-~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (569)
+-++| |+|+|||.||-.|+.+.+..- +.....+-. ++..+-+++..+.. ...++.++
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p--------------------~~~~lLk~ 529 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDP--------------------AITALLKR 529 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCH--------------------HHHHHHHH
Confidence 34678 999999999999998877654 333333333 57777777765432 12467789
Q ss_pred cCCCCccEEEEECCCCcE
Q 008336 113 FKVMGIPHLVILDENGKV 130 (569)
Q Consensus 113 ~~v~~~P~~~lid~~G~i 130 (569)
|++-+.|++++++++|+-
T Consensus 530 ~~~~G~P~~~ff~~~g~e 547 (569)
T COG4232 530 LGVFGVPTYLFFGPQGSE 547 (569)
T ss_pred cCCCCCCEEEEECCCCCc
Confidence 999999999999988854
No 310
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00033 Score=63.56 Aligned_cols=90 Identities=26% Similarity=0.519 Sum_probs=67.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC-
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV- 435 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v- 435 (569)
.+.++|.|++.|.+.|+...|.+.++..+|... .+.+-.|++.+-++ .+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGrfpd-----------------------~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGRFPD-----------------------VAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeeccCcC-----------------------hHHheeec
Confidence 469999999999999999999999999999754 46666666665442 4566665
Q ss_pred -----CCccEEEEECCCCcEEEccchhhHhhcC-CCCCCCCHHHH
Q 008336 436 -----SGIPMLVAIGPSGRTITKEARDMIAVHG-AEAYPFTEERM 474 (569)
Q Consensus 436 -----~~~Pt~~lid~~G~i~~~~~~~~~~~~g-~~~~p~~~~~~ 474 (569)
+..||++++ ++|+-+.+ +..+..-| +..+||+++.+
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv 240 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENV 240 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHH
Confidence 468999999 78888776 33344443 45578888765
No 311
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.29 E-value=0.0013 Score=58.41 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=47.5
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHH-H--HHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCch
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE 104 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 104 (569)
+.+..+.-.+| ++|.++++||+.|+.+..+ | .++++.+.+ ++.-|.|+.++.++.-..|..
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~------------- 92 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMN------------- 92 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHH-------------
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHH-------------
Confidence 34455555789 9999999999999988542 2 123333332 366666666655543222221
Q ss_pred hHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 105 TRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
......|..|.|++++++++|+.+..
T Consensus 93 ---~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 93 ---AVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp ---HHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred ---HHHHhcCCCCCCceEEECCCCCeeee
Confidence 11122378899999999999999874
No 312
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00029 Score=64.71 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+++.+++.||++||.+|..+...+..+.+.++ ++.++.+..+..+ +++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~-----------------------eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFP-----------------------EISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhh-----------------------HHHHHHHH
Confidence 57899999999999999999999999888873 2555555555443 58888999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 436 SGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~ 453 (569)
.+.|.+.++ ..|..+.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred hcCceeeee-ecchhhhh
Confidence 999999888 56666555
No 313
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0012 Score=54.18 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=51.6
Q ss_pred CCEEEEEEec--------CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHH
Q 008336 357 GKTILLYFSA--------HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKAS 428 (569)
Q Consensus 357 gk~vll~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~ 428 (569)
|+.++++|++ +|||.|.+..|.+.+..+....+ +.+|-+.+.+-+ . -.+++..
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~rp-~---------------Wk~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNRP-Y---------------WKDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCCC-c---------------ccCCCCc
Confidence 6667788874 59999999999998888866553 788887776432 1 2234445
Q ss_pred HHHhcCC-CCccEEEEECC
Q 008336 429 LSRKFKV-SGIPMLVAIGP 446 (569)
Q Consensus 429 l~~~~~v-~~~Pt~~lid~ 446 (569)
+....++ .++||++=.+.
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 6666666 99999999864
No 314
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.19 E-value=0.0027 Score=53.66 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCCEEEEEEecC----CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 356 AGKTILLYFSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 356 ~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
.+|.++|+++++ ||.+|+..+.. .++.+-+.. ++-+++.+++... ..+++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~e---------------------g~~la~ 70 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPE---------------------GYRVSQ 70 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChH---------------------HHHHHH
Confidence 389999999999 89999875432 122333332 3666666655432 257899
Q ss_pred hcCCCCccEEEEE---CCCCcEEEc
Q 008336 432 KFKVSGIPMLVAI---GPSGRTITK 453 (569)
Q Consensus 432 ~~~v~~~Pt~~li---d~~G~i~~~ 453 (569)
.++++++|++.++ +.+..++.+
T Consensus 71 ~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 71 ALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred HhCCCCCCEEEEEEecCCceEEEEE
Confidence 9999999999999 555556666
No 315
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.16 E-value=0.0045 Score=58.10 Aligned_cols=118 Identities=19% Similarity=0.324 Sum_probs=79.6
Q ss_pred ccCCcccee-cCCCCc-eecccCC--CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe----CC-----
Q 008336 335 VSGDLDFVV-GKNGGK-VPVSDLA--GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS----SD----- 401 (569)
Q Consensus 335 ~~~~~~f~~-~~~g~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is----~d----- 401 (569)
...+||..+ +.+|+. .++-++. ++|+||+|.+-.||+=+.-++.++++.++|++. .++-+|.|. .|
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCCCccCC
Confidence 445688865 888888 8888884 589999999989999999999999999999874 134444432 11
Q ss_pred ---------CC-hh--HHHHHHhcCCCcccccCch-hhHHHHHhcCCCCcc-EEEEECCCCcEEEccchh
Q 008336 402 ---------RD-QT--SFDEFFKGMPWLALPFGDA-RKASLSRKFKVSGIP-MLVAIGPSGRTITKEARD 457 (569)
Q Consensus 402 ---------~~-~~--~~~~~~~~~~~~~~~~~~d-~~~~l~~~~~v~~~P-t~~lid~~G~i~~~~~~~ 457 (569)
++ .+ ...+.+.+.. ...|+..| .++...+.|++ +| .+||| .+|+|++.++.+
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA--~PeRlyIi-~~gkv~Y~Gg~G 220 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGA--LPERLYII-QDGKVVYKGGPG 220 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCC--CcceEEEE-ECCEEEEeCCCC
Confidence 00 11 1122222222 45666554 45677788884 56 35566 699999997543
No 316
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.15 E-value=0.0055 Score=47.50 Aligned_cols=59 Identities=25% Similarity=0.489 Sum_probs=41.8
Q ss_pred EecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEEE
Q 008336 364 FSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLVA 443 (569)
Q Consensus 364 F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~l 443 (569)
+++++|+.|......++++...+. +.+-.+... +. .++ ..|||.++|++ +
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~-~~----------------------~~~-~~ygv~~vPal-v 54 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIE-DF----------------------EEI-EKYGVMSVPAL-V 54 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETT-TH----------------------HHH-HHTT-SSSSEE-E
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEcc-CH----------------------HHH-HHcCCCCCCEE-E
Confidence 367889999999998888877773 444444442 22 235 88999999999 5
Q ss_pred ECCCCcEEEcc
Q 008336 444 IGPSGRTITKE 454 (569)
Q Consensus 444 id~~G~i~~~~ 454 (569)
| ||+++..+
T Consensus 55 I--ng~~~~~G 63 (76)
T PF13192_consen 55 I--NGKVVFVG 63 (76)
T ss_dssp E--TTEEEEES
T ss_pred E--CCEEEEEe
Confidence 5 58888774
No 317
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.10 E-value=0.003 Score=46.35 Aligned_cols=59 Identities=34% Similarity=0.558 Sum_probs=42.2
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+ .+ +.+-.++++.+.+. .+.+.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~~-i~y~~~dv~~~~~~--------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------KG-IPYEEVDVDEDEEA--------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------TT-BEEEEEEGGGSHHH--------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------cC-CeeeEcccccchhH--------------------HHHHHHHcCCCccCE
Confidence 467899999999988777633 23 77788888866431 134556669999999
Q ss_pred EEEECCCCcE
Q 008336 121 LVILDENGKV 130 (569)
Q Consensus 121 ~~lid~~G~i 130 (569)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 886 4554
No 318
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.08 E-value=0.0028 Score=53.33 Aligned_cols=74 Identities=22% Similarity=0.552 Sum_probs=46.0
Q ss_pred CCc-EEEEEec-------CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 37 KGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 37 ~gk-vlv~F~a-------~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.|+ ++|.|++ +|||.|++..|.+.+......+ +..+|.+.+.. +..|++- . ..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~-r~~Wkdp--------------~--n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGD-RPEWKDP--------------N--NP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE----HHHHC-T--------------T--SH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCC-HHHhCCC--------------C--CC
Confidence 456 7888874 5999999999999999888543 47788777763 3333220 0 12
Q ss_pred HHH--hcCCCCccEEEEECCCCc
Q 008336 109 LDE--LFKVMGIPHLVILDENGK 129 (569)
Q Consensus 109 l~~--~~~v~~~P~~~lid~~G~ 129 (569)
... .+++.++||++-++..++
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-E
T ss_pred ceEcceeeeeecceEEEECCCCc
Confidence 333 699999999999965544
No 319
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.07 E-value=0.0037 Score=60.69 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=57.7
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC---CC-------------CH-HHHHHHHHh
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---DE-------------DD-EAFKGYFSK 92 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~---d~-------------~~-~~~~~~~~~ 92 (569)
+....-.++ +++.|.-+.||+|+++.+++.++.+. |++.|..+.+ .. ++ ..+..+...
T Consensus 110 i~~g~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~ 185 (251)
T PRK11657 110 ILDGKADAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEAS 185 (251)
T ss_pred ccccCCCCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHh
Confidence 333334567 89999999999999999998876543 3455544432 11 11 112222211
Q ss_pred CCCcc--cccC-C------chhHHHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 93 MPWLA--VPFS-D------SETRDKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 93 ~~~~~--~~~~-~------~~~~~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
+.... ..-. . -..+..+.+.+|++++|++++.|.+|++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~ 234 (251)
T PRK11657 186 GGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQ 234 (251)
T ss_pred hhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 11100 1000 1 112345788999999999999998897543
No 320
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00047 Score=62.58 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=67.7
Q ss_pred CCceeecCCCCCc---EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 27 NGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 27 ~g~~v~l~~~~gk---vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
+++......-++| ++|.|||.|.|.|++..|.+.++..+|...+ +.+-.|++..-++
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~-lkFGkvDiGrfpd------------------- 190 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL-LKFGKVDIGRFPD------------------- 190 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC-CcccceeeccCcC-------------------
Confidence 5554444433444 9999999999999999999999999998775 7777777765432
Q ss_pred hhHHHHHHhcCC------CCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHH
Q 008336 104 ETRDKLDELFKV------MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVER 153 (569)
Q Consensus 104 ~~~~~l~~~~~v------~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 153 (569)
.+.+|+| +.+||++++ ++|+-+.+.-.. ..+-....++++.+.
T Consensus 191 -----~a~kfris~s~~srQLPT~ilF-q~gkE~~RrP~v-d~~gra~s~~fSeen 239 (265)
T KOG0914|consen 191 -----VAAKFRISLSPGSRQLPTYILF-QKGKEVSRRPDV-DVKGRAVSFPFSEEN 239 (265)
T ss_pred -----hHHheeeccCcccccCCeEEEE-ccchhhhcCccc-cccCCcccccccHHH
Confidence 4566665 468999999 667655542211 112223445666554
No 321
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.97 E-value=0.02 Score=52.60 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=80.8
Q ss_pred HHHhhcccCCCceEEEECCC-CCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCcccee-cC
Q 008336 268 KLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVV-GK 345 (569)
Q Consensus 268 ~l~~~f~v~~~Ptlvi~~~~-g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~ 345 (569)
.+++.+++.. |+++++.+. ++...... . .++.+.+..++..... |-+.. +.
T Consensus 32 ~~~~~~~~~~-p~i~~~k~~~~~~~~y~~---------~--~~~~~~l~~fI~~~~~---------------P~v~~~t~ 84 (184)
T PF13848_consen 32 ELAKKYGIKE-PTIVVYKKFDEKPVVYDG---------D--KFTPEELKKFIKKNSF---------------PLVPELTP 84 (184)
T ss_dssp HHHHHCTCSS-SEEEEEECTTTSEEEESS---------S--TTSHHHHHHHHHHHSS---------------TSCEEEST
T ss_pred HHHHHhCCCC-CcEEEeccCCCCceeccc---------c--cCCHHHHHHHHHHhcc---------------ccccccch
Confidence 4667799988 999999863 33221111 0 2577788777764322 22211 21
Q ss_pred CCCceecccCCCCE-EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCch
Q 008336 346 NGGKVPVSDLAGKT-ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDA 424 (569)
Q Consensus 346 ~g~~v~l~~~~gk~-vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d 424 (569)
. .-..+.. .+++ +++.|..............|.+++++++++ +.++.+..+..+
T Consensus 85 ~-n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~~-------------------- 139 (184)
T PF13848_consen 85 E-NFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDFP-------------------- 139 (184)
T ss_dssp T-HHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTTH--------------------
T ss_pred h-hHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHhH--------------------
Confidence 1 1111111 2445 777776666666788888888888888765 888888877443
Q ss_pred hhHHHHHhcCCC--CccEEEEECCCCcE
Q 008336 425 RKASLSRKFKVS--GIPMLVAIGPSGRT 450 (569)
Q Consensus 425 ~~~~l~~~~~v~--~~Pt~~lid~~G~i 450 (569)
.+.+.+++. ..|++++++.....
T Consensus 140 ---~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 140 ---RLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp ---HHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred ---HHHHHcCCCCccCCEEEEEECCCCc
Confidence 467788988 89999999855543
No 322
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.96 E-value=0.0074 Score=56.47 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=55.9
Q ss_pred eeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC--C--------------HHHHHHHHHh
Q 008336 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--D--------------DEAFKGYFSK 92 (569)
Q Consensus 30 ~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~--~--------------~~~~~~~~~~ 92 (569)
.+....-.++ .++.|..+.||+|+++.+.+.+ ....-.+.++.+.... . .+.|.++...
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 3444444578 9999999999999999998877 1111134444444332 1 1122233322
Q ss_pred CCCc-ccc--cCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 93 MPWL-AVP--FSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 93 ~~~~-~~~--~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
.... ... -...+.+..+++.+|++++|+++ + .+|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 2211 111 12233456788999999999997 4 457653
No 323
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.96 E-value=0.0058 Score=59.34 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=56.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC-----CC-----------Ch-hHHHHHHhcCCC--
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS-----DR-----------DQ-TSFDEFFKGMPW-- 416 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~-----d~-----------~~-~~~~~~~~~~~~-- 416 (569)
.++.+++.|..+.||+|+++.+.+.++.+. . +++|..+-. +. ++ ..|..+...+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 378999999999999999999988765443 1 255444432 11 11 112222221111
Q ss_pred ccccc--------CchhhHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 417 LALPF--------GDARKASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 417 ~~~~~--------~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
+.-+- ..+.+..+++.+||+++|++++.|.+|.+...
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 00110 11234568889999999999999999986443
No 324
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.93 E-value=0.0083 Score=46.48 Aligned_cols=59 Identities=32% Similarity=0.522 Sum_probs=41.8
Q ss_pred EEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEE
Q 008336 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122 (569)
Q Consensus 43 ~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 122 (569)
.+++++|++|......+.++...+. +.+-.+... +.+ .+ ..||+.++|++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~-~~~-----------------------~~-~~ygv~~vPal- 53 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIE-DFE-----------------------EI-EKYGVMSVPAL- 53 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETT-THH-----------------------HH-HHTT-SSSSEE-
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEcc-CHH-----------------------HH-HHcCCCCCCEE-
Confidence 3468889999999999999988863 444444442 322 45 89999999999
Q ss_pred EECCCCcEEEc
Q 008336 123 ILDENGKVLSD 133 (569)
Q Consensus 123 lid~~G~i~~~ 133 (569)
++ ||+++..
T Consensus 54 vI--ng~~~~~ 62 (76)
T PF13192_consen 54 VI--NGKVVFV 62 (76)
T ss_dssp EE--TTEEEEE
T ss_pred EE--CCEEEEE
Confidence 45 5887753
No 325
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.91 E-value=0.0058 Score=51.61 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=49.0
Q ss_pred cCCCCCc-EEEEEecC----CCHhhHhh--HHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchh
Q 008336 33 LDSLKGK-IGLYFSAS----WCGPCQRF--TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (569)
Q Consensus 33 l~~~~gk-vlv~F~a~----wC~~C~~~--~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (569)
.+.-.+| ++|+++++ ||..|+.. .|++.+..+ . ++.+++.++.....
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~-~fv~w~~dv~~~eg--------------------- 65 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----T-RMLFWACSVAKPEG--------------------- 65 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----c-CEEEEEEecCChHH---------------------
Confidence 3445688 99999999 99999876 455555543 2 47777777764432
Q ss_pred HHHHHHhcCCCCccEEEEEC
Q 008336 106 RDKLDELFKVMGIPHLVILD 125 (569)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid 125 (569)
..++..++++++|++.+++
T Consensus 66 -~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 66 -YRVSQALRERTYPFLAMIM 84 (116)
T ss_pred -HHHHHHhCCCCCCEEEEEE
Confidence 4688999999999999994
No 326
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.88 E-value=0.0089 Score=57.28 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=56.8
Q ss_pred eecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC---CH----------------HHHHHHH
Q 008336 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DD----------------EAFKGYF 90 (569)
Q Consensus 31 v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~---~~----------------~~~~~~~ 90 (569)
+....-.|+ +++.|.-+.||+|+++.+++.++.+ .+ +.|..+.... .. ..+.+++
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~ 174 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LG-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAM 174 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CC-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHH
Confidence 333334578 9999999999999999999887643 23 5555543221 11 1222223
Q ss_pred HhCCCcccc-cCCchhHHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 91 SKMPWLAVP-FSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (569)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~l~~~~~v~~~P~~~lid~~G~i~ 131 (569)
......... -..-..+..+++.+||+++|++++ ++|+++
T Consensus 175 ~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 175 KGKDVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred cCCCCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 222211111 122344567899999999999885 467665
No 327
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.73 E-value=0.012 Score=54.96 Aligned_cols=88 Identities=20% Similarity=0.346 Sum_probs=53.0
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh----------------hHHHHHHhcCCCc-cc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ----------------TSFDEFFKGMPWL-AL 419 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~----------------~~~~~~~~~~~~~-~~ 419 (569)
+++.++.|..+.||+|+++.+.+.+ ...+ -.+.++.+.....+ ..|.++.....-. ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~-v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADG-VTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCc-eEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 7899999999999999999998876 1111 12444444443211 1122222221110 11
Q ss_pred ---ccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 420 ---PFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 420 ---~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
....+.+..+++.+||+++|+++ + .+|+++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 11234566889999999999998 5 457764
No 328
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.73 E-value=0.0094 Score=43.71 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+.+|||+|++....|. +. ++..-.++++.+++. ..++.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~~-----~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----EK-----GIPYEEVDVDEDEEA-------------------REELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----HT-----TBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHH----Hc-----CCeeeEcccccchhH-------------------HHHHHHHcCCCccCE
Confidence 46788999999999988762 22 366677777765421 234555569999999
Q ss_pred EEEECCCCcE
Q 008336 441 LVAIGPSGRT 450 (569)
Q Consensus 441 ~~lid~~G~i 450 (569)
+++ +|+.
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 986 4554
No 329
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.70 E-value=0.0067 Score=48.14 Aligned_cols=40 Identities=20% Similarity=0.367 Sum_probs=32.1
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
++.|+.+|||+|++....|.++..++. ++.+..++++.+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~ 42 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEG 42 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCCh
Confidence 567899999999999999999887642 3777788887653
No 330
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.69 E-value=0.012 Score=56.50 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=54.5
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCC---Ch----------------hHHHHHHhcCCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDR---DQ----------------TSFDEFFKGMPW 416 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~---~~----------------~~~~~~~~~~~~ 416 (569)
.|+.+++.|..+.||+|+++.+.+.++.+ . +++|..+.... .+ ..+...+....-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 37899999999999999999998876533 1 35665543221 10 112222221110
Q ss_pred c--ccccCchhhHHHHHhcCCCCccEEEEECCCCcEE
Q 008336 417 L--ALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 417 ~--~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~ 451 (569)
. ......+.+.++++.+||+++|++++ ++|+++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 0 01112245678899999999999994 478775
No 331
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.57 E-value=0.023 Score=43.06 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++||++|.+....|.+ . ++.+..+++|.+... ..++.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~----~-----~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE----R-----GIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH----C-----CCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 467899999999998776654 1 255556666654321 123444457889999
Q ss_pred EEE
Q 008336 441 LVA 443 (569)
Q Consensus 441 ~~l 443 (569)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 875
No 332
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.54 E-value=0.00041 Score=63.94 Aligned_cols=73 Identities=22% Similarity=0.397 Sum_probs=57.6
Q ss_pred CcEEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 38 GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 38 gkvlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
|..++.|+|||||.|....|++.+++.--.+- .+.+..|++..++ .+.-+|-+.+
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~np------------------------gLsGRF~vta 94 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNP------------------------GLSGRFLVTA 94 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEecc------------------------ccceeeEEEe
Confidence 34889999999999999999999987654433 4777777766542 3667888999
Q ss_pred ccEEEEECCCCcEEEcCCc
Q 008336 118 IPHLVILDENGKVLSDGGV 136 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~~~~ 136 (569)
.|++|=+ ++|....+.|.
T Consensus 95 LptIYHv-kDGeFrrysga 112 (248)
T KOG0913|consen 95 LPTIYHV-KDGEFRRYSGA 112 (248)
T ss_pred cceEEEe-eccccccccCc
Confidence 9999998 89988776554
No 333
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.53 E-value=0.0075 Score=48.64 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=48.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh------h-HHHHH--HhcCCCcccccCch-hhHHHH
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ------T-SFDEF--FKGMPWLALPFGDA-RKASLS 430 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~------~-~~~~~--~~~~~~~~~~~~~d-~~~~l~ 430 (569)
+..|+.+.||+|....+.+.++...... ++.+....+.-.. . ..+.. ..... ....+... .....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEALADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHHHHHHHHH
Confidence 4678999999999999999988744433 4777766553211 1 11111 11100 00000000 445678
Q ss_pred HhcCCCCccEEEEEC
Q 008336 431 RKFKVSGIPMLVAIG 445 (569)
Q Consensus 431 ~~~~v~~~Pt~~lid 445 (569)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 889999999999976
No 334
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.52 E-value=0.01 Score=57.81 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
+..|||.||-+.++.|..+...|..|+.+|.. +.++.|...... +...|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~------------------------~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP------------------------ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC------------------------TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC------------------------cccCCccc
Confidence 45899999999999999999999999999974 688888765432 46679999
Q ss_pred CccEEEEECCCCcEEEccc
Q 008336 437 GIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~~~~~ 455 (569)
..|+++++ ++|.++..-.
T Consensus 198 ~LPtllvY-k~G~l~~~~V 215 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFV 215 (265)
T ss_dssp C-SEEEEE-ETTEEEEEEC
T ss_pred CCCEEEEE-ECCEEEEeEE
Confidence 99999999 7999888743
No 335
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.49 E-value=0.0087 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=45.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc--CCCCc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF--KVSGI 438 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~--~v~~~ 438 (569)
++.|+.+||++|++....|+++..++. ++.+..++++.+.... .++.+.+ ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~-------------------~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISK-------------------ADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHH-------------------HHHHHHHCCCCCcC
Confidence 677899999999999999998876642 4677777777553211 1233333 45889
Q ss_pred cEEEEECCCCcEEE
Q 008336 439 PMLVAIGPSGRTIT 452 (569)
Q Consensus 439 Pt~~lid~~G~i~~ 452 (569)
|+++ + +|+.+.
T Consensus 60 P~if-i--~g~~ig 70 (85)
T PRK11200 60 PQIF-V--DQKHIG 70 (85)
T ss_pred CEEE-E--CCEEEc
Confidence 9986 4 566654
No 336
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.45 E-value=0.32 Score=52.78 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.+..-+..|..+.||+|......+++++..- +.+..-.|.....+ +++..|
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~id~~~~~-----------------------~~~~~~ 165 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMIDGALFQ-----------------------DEVEAR 165 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEEEchhCH-----------------------hHHHhc
Confidence 334556688899999999998888887766542 24666555443333 588999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
++.++|++++ +|+.+..
T Consensus 166 ~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 166 NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CCcccCEEEE---CCcEEEe
Confidence 9999999976 3454444
No 337
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.45 E-value=0.01 Score=50.81 Aligned_cols=68 Identities=12% Similarity=0.227 Sum_probs=52.6
Q ss_pred EEEEEe--cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC
Q 008336 40 IGLYFS--ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (569)
Q Consensus 40 vlv~F~--a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (569)
.+|.|- .--+|-+....-.|.+++++|... ++.++.|++|.++ .++..|||.+
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~------------------------~LA~~fgV~s 91 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSE------------------------AIGDRFGVFR 91 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCH------------------------HHHHHcCCcc
Confidence 444443 234566777777888888998533 4899999999774 4999999999
Q ss_pred ccEEEEECCCCcEEEc
Q 008336 118 IPHLVILDENGKVLSD 133 (569)
Q Consensus 118 ~P~~~lid~~G~i~~~ 133 (569)
+||++++ ++|+.+..
T Consensus 92 iPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 92 FPATLVF-TGGNYRGV 106 (132)
T ss_pred CCEEEEE-ECCEEEEE
Confidence 9999999 88988864
No 338
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.43 E-value=0.011 Score=46.40 Aligned_cols=63 Identities=29% Similarity=0.478 Sum_probs=42.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|.++|||+|....+.|.++.. .+.++-++.+.+....+ ..+.+.++..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~-------------------~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQ-------------------DYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHH-------------------HHHHHHhCCCCCCe
Confidence 467889999999999888887633 35666666665432211 24566778999999
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
++ + +|+.+
T Consensus 57 v~-~--~g~~i 64 (82)
T cd03419 57 VF-I--GGKFI 64 (82)
T ss_pred EE-E--CCEEE
Confidence 74 4 45443
No 339
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.38 E-value=0.015 Score=46.77 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=48.9
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC--CC-----HHHHHHHHHhC-CCcccccCCchhHHHHHHh
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD--ED-----DEAFKGYFSKM-PWLAVPFSDSETRDKLDEL 112 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d--~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 112 (569)
+..|+.+.||+|....+.+.++...... ++.+....+. .. ....+...... ......+.+.-........
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4679999999999999999998744432 4666666543 22 11111111111 0000001000033467889
Q ss_pred cCCCCccEEEEEC
Q 008336 113 FKVMGIPHLVILD 125 (569)
Q Consensus 113 ~~v~~~P~~~lid 125 (569)
+|+.++|++++-|
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 9999999998875
No 340
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.29 E-value=0.012 Score=49.26 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=54.8
Q ss_pred cchhhhHHHHHHHHH---HhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccCC--CceEEEEC
Q 008336 211 ASAEFTPRLVEVYEK---LKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST--LPTLVIIG 285 (569)
Q Consensus 211 ~c~~~~~~~~~~~~~---~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~~--~Ptlvi~~ 285 (569)
....+.+.+.+++++ ++++ +.|+.+|.+. ....+++||++. +|.+++++
T Consensus 28 ~~~~~~~~~~~vAk~~~~~kgk-----i~Fv~~d~~~---------------------~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 28 DLESLKEFKQAVARQLISEKGA-----INFLTADGDK---------------------FRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHhcCce-----EEEEEEechH---------------------hhhHHHHcCCCHhHCCEEEEEc
Confidence 346778888899999 8766 7888888765 445789999985 99999998
Q ss_pred CCCCchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHH
Q 008336 286 PDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA 323 (569)
Q Consensus 286 ~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 323 (569)
.++...+... .-.++++.+.+|.+...+
T Consensus 82 ~~~~~Ky~~~----------~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 82 FRHMYLFPDF----------EDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred chhcCcCCCC----------ccccCHHHHHHHHHHHhc
Confidence 6542221101 114688999998887654
No 341
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.27 E-value=0.021 Score=43.28 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=36.7
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|+++||++|++....|.+ .+ +.+..++++.+.... ..+.+..++.++|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~-i~~~~~~i~~~~~~~--------------------~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG-IPFEEVDVDEDPEAL--------------------EELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC-CCeEEEeCCCCHHHH--------------------HHHHHHcCCcccCE
Confidence 567899999999997776654 22 556666777543311 13444457889998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
No 342
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=96.21 E-value=0.0028 Score=42.84 Aligned_cols=30 Identities=30% Similarity=0.670 Sum_probs=27.7
Q ss_pred eccCCCCCCCceeEEcCCC-CCCccccccCC
Q 008336 510 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
.||+|.+...+-.|+|.+| +|||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 5999999999999999999 89999999863
No 343
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.12 E-value=0.014 Score=45.66 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=42.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|+++|||+|......|.++.. .+.++-++.+.+.... ...+.+..+..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 467889999999999998876433 2566666666542211 124556678899999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 57 v~-~--~g~~i 64 (82)
T cd03419 57 VF-I--GGKFI 64 (82)
T ss_pred EE-E--CCEEE
Confidence 74 4 35554
No 344
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.11 E-value=0.042 Score=41.37 Aligned_cols=60 Identities=32% Similarity=0.440 Sum_probs=40.8
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|.++|||+|+...+.|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~--------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGEL--------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 56788999999999888777552 55667777765431 124555667788897
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 54 ~~~---~~~~i 61 (72)
T cd02066 54 IFI---NGEFI 61 (72)
T ss_pred EEE---CCEEE
Confidence 754 45554
No 345
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.03 E-value=0.064 Score=50.09 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=74.7
Q ss_pred eecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhc-CCCeEEEEEeCCCChhHHH-HHHhcCCCcccccCc--hh
Q 008336 350 VPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKER-NESLEVVFISSDRDQTSFD-EFFKGMPWLALPFGD--AR 425 (569)
Q Consensus 350 v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~vv~is~d~~~~~~~-~~~~~~~~~~~~~~~--d~ 425 (569)
....+..|+++||.+...+|..|...+..|+.|..++... ..++.++.|+--.....++ ..+++.--..+|+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 4556678999999999999999999999999999999765 3577888887644433333 233333224577764 24
Q ss_pred hHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 426 KASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 426 ~~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
...++..++-.. =-++|+|+=|++.+.
T Consensus 99 q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 99 QPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred ccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 456777776543 467899999999987
No 346
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.017 Score=53.31 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=52.5
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+++ ++++|||+||.+|.++...+..+++.++ ++.++.+..+.. ..++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~------------------------~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEF------------------------PEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhh------------------------hHHHHHHHH
Confidence 677 9999999999999999888888888772 356666555543 358899999
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
.+.|++..+ ..|+.+
T Consensus 69 ~~vp~~~~~-~~~~~v 83 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKV 83 (227)
T ss_pred hcCceeeee-ecchhh
Confidence 999999888 455444
No 347
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.97 E-value=0.76 Score=49.88 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=48.0
Q ss_pred cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 354 DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 354 ~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
.+.++.-+..|..+.||+|......+++++... .++..-.|..... .+++..|
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~----p~i~~~~id~~~~-----------------------~~~~~~~ 166 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLN----PNISHTMIDGALF-----------------------QDEVEAL 166 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEEEchhC-----------------------HHHHHhc
Confidence 344566788899999999998777776665553 2355544443333 3588999
Q ss_pred CCCCccEEEEECCCCcEEEc
Q 008336 434 KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 ~v~~~Pt~~lid~~G~i~~~ 453 (569)
++.++|++++ +|..+..
T Consensus 167 ~v~~VP~~~i---~~~~~~~ 183 (515)
T TIGR03140 167 GIQGVPAVFL---NGEEFHN 183 (515)
T ss_pred CCcccCEEEE---CCcEEEe
Confidence 9999999986 3444443
No 348
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.85 E-value=0.035 Score=43.29 Aligned_cols=60 Identities=20% Similarity=0.405 Sum_probs=40.7
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
.++.|..+|||+|++....|.+ .| +.+..++++.+.+. ..+....|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~g-i~y~~idi~~~~~~---------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------KG-YDFEEIPLGNDARG---------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------cC-CCcEEEECCCChHH---------------------HHHHHHHCCCCcC
Confidence 5677999999999998777753 23 55566677654331 2355567889999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9864 46543
No 349
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.76 E-value=0.031 Score=54.41 Aligned_cols=90 Identities=11% Similarity=0.179 Sum_probs=60.0
Q ss_pred Cc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 38 gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
+. |+|+||-+.++.|..+...|..++.+|. .+.++.|..... .+...|.+.
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~-------------------------~~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKC-------------------------PASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGC-------------------------CTTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhcc-------------------------CcccCCccc
Confidence 44 9999999999999999999999999997 477888776532 144678999
Q ss_pred CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHH
Q 008336 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (569)
Q Consensus 117 ~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 160 (569)
.+|+++++ ++|.++..-. .+. +.+. -.++...++.++..
T Consensus 198 ~LPtllvY-k~G~l~~~~V-~l~-~~~g--~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFV-GLT-DLLG--DDFFTEDLEAFLIE 236 (265)
T ss_dssp C-SEEEEE-ETTEEEEEEC-TGG-GCT---TT--HHHHHHHHHT
T ss_pred CCCEEEEE-ECCEEEEeEE-ehH-HhcC--CCCCHHHHHHHHHH
Confidence 99999999 6898876421 111 1221 23666777776643
No 350
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=95.73 E-value=0.077 Score=44.40 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=56.4
Q ss_pred cEEEEEEecC---CcccchhhhHHHHHHHHHHh-cCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhc
Q 008336 198 KTIGLYFSMS---SYKASAEFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (569)
Q Consensus 198 k~v~l~f~~~---~~~~c~~~~~~~~~~~~~~~-~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f 273 (569)
+.+++|+... .-.....+.+.+.+++++++ ++ +.|+.+|.+. ....+++|
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-----i~Fv~~D~~~---------------------~~~~l~~f 69 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-----LNFAVADKED---------------------FSHELEEF 69 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-----EEEEEEcHHH---------------------HHHHHHHc
Confidence 3445554332 22334567788889999998 55 8888887765 44578999
Q ss_pred ccC--C--CceEEEECCCC-CchhhhhHHHHHhhCCCCCCC-ChHHHHHHHHH
Q 008336 274 ELS--T--LPTLVIIGPDG-KTLHSNVAEAIEEHGVGAFPF-TPEKFAELAEI 320 (569)
Q Consensus 274 ~v~--~--~Ptlvi~~~~g-~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~ 320 (569)
||+ . .|++++++.++ |+... -.+ +.+++.+|.+.
T Consensus 70 gl~~~~~~~P~~~i~~~~~~KY~~~-------------~~~~t~e~i~~F~~~ 109 (111)
T cd03073 70 GLDFSGGEKPVVAIRTAKGKKYVME-------------EEFSDVDALEEFLED 109 (111)
T ss_pred CCCcccCCCCEEEEEeCCCCccCCC-------------cccCCHHHHHHHHHH
Confidence 998 4 99999998655 33210 024 77888887764
No 351
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=95.69 E-value=0.044 Score=50.44 Aligned_cols=110 Identities=24% Similarity=0.487 Sum_probs=77.7
Q ss_pred cccee-cCCCCceecccC-CCCE--EEEEEe-----cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHH
Q 008336 339 LDFVV-GKNGGKVPVSDL-AGKT--ILLYFS-----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDE 409 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~~-~gk~--vll~F~-----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~ 409 (569)
.++++ +.+|. ++|.++ .|+. +|-.|. ...|+.|...+..+.-....+..+ ++.++.||-. ..+.+..
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r--d~tfa~vSra-P~~~i~a 122 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR--DTTFAVVSRA-PLEKIEA 122 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC--CceEEEEeCC-CHHHHHH
Confidence 34666 55554 888875 5653 333343 346999999999997777778766 6888888855 4578999
Q ss_pred HHhcCCCcccccCchhhHHHHHhcCC-----CCccEEEEECCC-CcEEEc
Q 008336 410 FFKGMPWLALPFGDARKASLSRKFKV-----SGIPMLVAIGPS-GRTITK 453 (569)
Q Consensus 410 ~~~~~~~~~~~~~~d~~~~l~~~~~v-----~~~Pt~~lid~~-G~i~~~ 453 (569)
|.++|+|- +|..+.....+...|++ ...|.+-++=++ |+|...
T Consensus 123 fk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 123 FKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred HHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 99999997 88887777778888887 456755444344 555544
No 352
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.044 Score=45.20 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=48.6
Q ss_pred CCc-EEEEEec--------CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHH
Q 008336 37 KGK-IGLYFSA--------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (569)
Q Consensus 37 ~gk-vlv~F~a--------~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (569)
+|+ +++.|.+ ||||.|.+..|.+.+..+.... ++.+|.+.+.+- +.|+. .. .
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~r-p~Wk~--------------p~--n 84 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNR-PYWKD--------------PA--N 84 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCC-CcccC--------------CC--C
Confidence 567 8888873 7999999999999999885543 478888777632 21111 00 1
Q ss_pred HHHHhcCC-CCccEEEEECC
Q 008336 108 KLDELFKV-MGIPHLVILDE 126 (569)
Q Consensus 108 ~l~~~~~v-~~~P~~~lid~ 126 (569)
.+.+..++ .++||++=.+.
T Consensus 85 ~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 85 PFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccccCCCceeecceeeEEcC
Confidence 24445555 89999988864
No 353
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.61 E-value=0.063 Score=40.35 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=40.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+||++|+.....|.+.. +.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 45788999999999998876532 44556666655421 134555667788998
Q ss_pred EEEECCCCcEEEc
Q 008336 441 LVAIGPSGRTITK 453 (569)
Q Consensus 441 ~~lid~~G~i~~~ 453 (569)
+++ +|+.+..
T Consensus 54 ~~~---~~~~igg 63 (72)
T cd02066 54 IFI---NGEFIGG 63 (72)
T ss_pred EEE---CCEEEec
Confidence 754 5665553
No 354
>PHA03050 glutaredoxin; Provisional
Probab=95.51 E-value=0.033 Score=46.33 Aligned_cols=67 Identities=15% Similarity=0.271 Sum_probs=39.3
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
-++.|..+|||+|++....|.+..-.. ..+.++-|+-..+...+ ...+.+..|.+.+|
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~-------------------~~~l~~~tG~~tVP 71 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENEL-------------------RDYFEQITGGRTVP 71 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHH-------------------HHHHHHHcCCCCcC
Confidence 456699999999998877766542111 12444444321121111 23566677888999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
++|+ +|+.+
T Consensus 72 ~IfI---~g~~i 80 (108)
T PHA03050 72 RIFF---GKTSI 80 (108)
T ss_pred EEEE---CCEEE
Confidence 8855 36554
No 355
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.50 E-value=0.043 Score=42.67 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=35.9
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
..|+.+|||+|.+....|.+. + +.+-.++++.+++.. ..+.+..+...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-------~-i~~~~~di~~~~~~~--------------------~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-------G-VTFTEIRVDGDPALR--------------------DEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-------C-CCcEEEEecCCHHHH--------------------HHHHHHhCCCCcCEE
Confidence 568899999999988777643 2 445555666554321 235555678899987
Q ss_pred EE
Q 008336 122 VI 123 (569)
Q Consensus 122 ~l 123 (569)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 44
No 356
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.48 E-value=0.047 Score=47.14 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=54.7
Q ss_pred hhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC--CCceEEEECCCC-C
Q 008336 213 AEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--TLPTLVIIGPDG-K 289 (569)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~--~~Ptlvi~~~~g-~ 289 (569)
..+...+.+++++++++. +.|+.+|.+. ...+.++|||. ++|++++++.++ +
T Consensus 40 ~~~~~~l~~vAk~~kgk~----i~Fv~vd~~~---------------------~~~~~~~fgl~~~~~P~v~i~~~~~~K 94 (130)
T cd02983 40 NKYLEILKSVAEKFKKKP----WGWLWTEAGA---------------------QLDLEEALNIGGFGYPAMVAINFRKMK 94 (130)
T ss_pred HHHHHHHHHHHHHhcCCc----EEEEEEeCcc---------------------cHHHHHHcCCCccCCCEEEEEecccCc
Confidence 456678888999997653 5566666554 34578999996 599999998765 4
Q ss_pred chhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHh
Q 008336 290 TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEE 326 (569)
Q Consensus 290 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (569)
+... .-+++.+.+.+|.+....+..
T Consensus 95 Y~~~------------~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 95 FATL------------KGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred cccc------------cCccCHHHHHHHHHHHHcCCc
Confidence 3211 115799999999998876553
No 357
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.46 E-value=0.051 Score=44.46 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=38.0
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
-++.|..+|||+|.+....|.+. + +..-.+++|.+++.. + ....+.+..|...+|
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~-------~-i~~~~vdid~~~~~~-~----------------~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL-------G-VNPAVHEIDKEPAGK-D----------------IENALSRLGCSPAVP 63 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-------C-CCCEEEEcCCCccHH-H----------------HHHHHHHhcCCCCcC
Confidence 45668899999999877655543 2 334455555432210 0 012355556788999
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.++ + +|+.+
T Consensus 64 ~Vf-i--~g~~i 72 (99)
T TIGR02189 64 AVF-V--GGKLV 72 (99)
T ss_pred eEE-E--CCEEE
Confidence 874 4 45444
No 358
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.43 E-value=0.25 Score=38.66 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=36.3
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
+..|..+|||+|.+....|.+ .| +.+-.++++.+++.. ..+ +..|...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g-I~~~~idi~~~~~~~--------------------~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG-FDFEMINVDRVPEAA--------------------ETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHH-HHcCCCCcCE
Confidence 456788999999987766643 34 677777887665421 122 3357789998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
No 359
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.42 E-value=0.052 Score=43.12 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=27.4
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~ 82 (569)
++.|..+|||+|.+....|.++..++. .+.+..++++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~ 40 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAE 40 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCC
Confidence 567889999999998888877654322 255666666643
No 360
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=95.37 E-value=0.0092 Score=40.66 Aligned_cols=29 Identities=31% Similarity=0.812 Sum_probs=25.9
Q ss_pred eccCCCCCC-CceeEEcCCC-CCCccccccC
Q 008336 510 SCDGCDEEG-RVWAFSCDEC-DFCLHPNCAL 538 (569)
Q Consensus 510 ~c~~C~~~g-~~~~~~~~~~-~~~~~~~~~~ 538 (569)
.||+|++.. .+-.|.|.+| ||||...|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 599999665 5899999999 8999999986
No 361
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.32 E-value=0.31 Score=42.82 Aligned_cols=122 Identities=10% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHH-HhhcCCCeEEEE-EeCCCC--------hhHHHHHHhcCC
Q 008336 346 NGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKK-IKERNESLEVVF-ISSDRD--------QTSFDEFFKGMP 415 (569)
Q Consensus 346 ~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~vv~-is~d~~--------~~~~~~~~~~~~ 415 (569)
..+..+...+.||+.+|...|-.-..=....|.+..+.+. |... .++... |+.|+. ....+.--+++|
T Consensus 26 ~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p 103 (160)
T PF09695_consen 26 SYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFP 103 (160)
T ss_pred cccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCC
Confidence 4456677888999999988876544444455555555444 4432 344433 455532 122223333556
Q ss_pred CcccccCchhhHHHHHhcCCCCc-cEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhh
Q 008336 416 WLALPFGDARKASLSRKFKVSGI-PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYN 482 (569)
Q Consensus 416 ~~~~~~~~d~~~~l~~~~~v~~~-Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~ 482 (569)
|-.+- .|.++.+.+.+++..- -.++++|++|+|++...+ .+++.++++..+.++
T Consensus 104 ~s~~v--lD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G-----------~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 104 WSQFV--LDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEG-----------ALSPAEVQQVIALLK 158 (160)
T ss_pred CcEEE--EcCCCceeccccCCCCCceEEEEcCCccEEEEECC-----------CCCHHHHHHHHHHHh
Confidence 65443 3455567777877643 568889999999998544 377888877766554
No 362
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.30 E-value=0.084 Score=40.45 Aligned_cols=60 Identities=13% Similarity=0.220 Sum_probs=38.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC-Ccc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-GIP 119 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 119 (569)
++.|..+|||+|.+....|.+ .+ +.+-.++++.+.+.. ..+.+..+.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~-i~~~~i~i~~~~~~~--------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG-VDYEEIDVDGDPALR--------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC-CcEEEEECCCCHHHH--------------------HHHHHHhCCCCccC
Confidence 467889999999988777654 22 566667777654321 2344555666 889
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.++ + +|+.+
T Consensus 54 ~v~-i--~g~~i 62 (75)
T cd03418 54 QIF-I--GDVHI 62 (75)
T ss_pred EEE-E--CCEEE
Confidence 765 4 45544
No 363
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.21 E-value=0.078 Score=48.40 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=32.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEe
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~ 78 (569)
.++ .|+.|+...||+|+.+.+.+.++.+++.. ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcC
Confidence 577 99999999999999999999999998843 35555443
No 364
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.14 E-value=0.079 Score=47.48 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=44.0
Q ss_pred ceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 29 ~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
..+.+.+-.++ +|+.|+...||+|+++.+.+.++.+++-+.+++.++...+....
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK 58 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence 34556677788 99999999999999999999999999866667999998875443
No 365
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.06 E-value=0.097 Score=39.85 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=38.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|.+....|.+ .+ +.+..++++.+... ..+....|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~-i~~~~~~v~~~~~~---------------------~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG-ISYEEIPLGKDITG---------------------RSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC-CCcEEEECCCChhH---------------------HHHHHHhCCCCcCe
Confidence 566889999999998766653 22 55666666654321 23555578899998
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
++ + +|+.+
T Consensus 54 if-i--~g~~i 61 (72)
T cd03029 54 VF-I--DGELI 61 (72)
T ss_pred EE-E--CCEEE
Confidence 74 5 35543
No 366
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.04 E-value=0.11 Score=39.73 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+ .+ +.+..++++.+.+. ...+.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g-i~~~~~di~~~~~~--------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG-LPYVEINIDIFPER--------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC-CceEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 456788999999988776664 23 66667777765432 134556667778898
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 55 v~i---~~~~i 62 (73)
T cd03027 55 IFF---NEKLV 62 (73)
T ss_pred EEE---CCEEE
Confidence 744 35444
No 367
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.99 E-value=0.067 Score=42.50 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=40.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcC--CCCc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFK--VSGI 438 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~--v~~~ 438 (569)
++.|..+|||+|.+....|.++..+.. ++.+..++++.+... ..++.+.++ +..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999999998876543321 245555666543211 113444455 4789
Q ss_pred cEEEEECCCCcEE
Q 008336 439 PMLVAIGPSGRTI 451 (569)
Q Consensus 439 Pt~~lid~~G~i~ 451 (569)
|.++ + +|+.+
T Consensus 59 P~if-i--~g~~i 68 (86)
T TIGR02183 59 PQIF-V--DEKHV 68 (86)
T ss_pred CeEE-E--CCEEe
Confidence 9995 4 35543
No 368
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.99 E-value=0.087 Score=41.03 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=41.4
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.+.-++.|..+||++|++....|.+ . ++....++++.+.. ...+.+..+..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----~-----gi~y~~idi~~~~~--------------------~~~~~~~~g~~ 56 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE----K-----GYDFEEIPLGNDAR--------------------GRSLRAVTGAT 56 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH----c-----CCCcEEEECCCChH--------------------HHHHHHHHCCC
Confidence 3445667899999999999888753 2 24444566665432 12345567889
Q ss_pred CccEEEEECCCCcEE
Q 008336 437 GIPMLVAIGPSGRTI 451 (569)
Q Consensus 437 ~~Pt~~lid~~G~i~ 451 (569)
.+|.+++ +|+.+
T Consensus 57 ~vP~i~i---~g~~i 68 (79)
T TIGR02190 57 TVPQVFI---GGKLI 68 (79)
T ss_pred CcCeEEE---CCEEE
Confidence 9999964 46554
No 369
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=94.98 E-value=0.13 Score=48.01 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=76.1
Q ss_pred cCccCCceecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCCCHHHHH-HHHH
Q 008336 16 SSSARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDEAFK-GYFS 91 (569)
Q Consensus 16 g~~~pdf~~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~~~~~~~-~~~~ 91 (569)
-.++|.+.+. | .....+..|+ ++|-+-..+|..|...+..|..+..+|...| +|.++.|+--.....+. ..++
T Consensus 7 C~~~p~W~i~--~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 7 CKPPPPWKIG--G-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELK 83 (238)
T ss_pred CCCCCCceEC--C-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHH
Confidence 3556666432 2 3446677899 8888988899999999999999999998887 78888887654443333 3344
Q ss_pred hCCCcccccC-CchhHHHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 92 KMPWLAVPFS-DSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (569)
Q Consensus 92 ~~~~~~~~~~-~~~~~~~l~~~~~v~~~P~~~lid~~G~i~~~ 133 (569)
+.-...+++. .......++..++-.. =-++|+|+=|++.+.
T Consensus 84 ~r~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 84 RRVSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred HhCCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 4333333432 2223345666666443 247888999998874
No 370
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.95 E-value=0.32 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.400 Sum_probs=36.2
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|..+||++|.+....|.+ + ++.+-.++++.+++.. ..+ +..+...+|+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~-------------------~~~-~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAA-------------------ETL-RAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHH-------------------HHH-HHcCCCCcCE
Confidence 456789999999998777633 2 4666667777654321 122 3357889999
Q ss_pred EEE
Q 008336 441 LVA 443 (569)
Q Consensus 441 ~~l 443 (569)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 965
No 371
>PHA03050 glutaredoxin; Provisional
Probab=94.76 E-value=0.058 Score=44.86 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=39.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|++....|.+..-.. ..++++-|+-..+...+ ...+.+..|.+.+|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~------------------~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENEL------------------RDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHH------------------HHHHHHHcCCCCcCE
Confidence 56789999999999888775532111 12445544421111111 234666678889999
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+|+ +|+.+.
T Consensus 73 IfI---~g~~iG 81 (108)
T PHA03050 73 IFF---GKTSIG 81 (108)
T ss_pred EEE---CCEEEe
Confidence 954 356543
No 372
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.62 E-value=0.24 Score=40.62 Aligned_cols=75 Identities=15% Similarity=0.345 Sum_probs=53.3
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.++++|+=.++.||........|++.++...++ +.+..+.+-..+ +-...++..|||+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V~ 76 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGVK 76 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT--
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCCC
Confidence 678888888999999999999998888776543 777887765443 2346789999997
Q ss_pred -CccEEEEECCCCcEEEcc
Q 008336 437 -GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 -~~Pt~~lid~~G~i~~~~ 454 (569)
.-|-+++| ++|++++..
T Consensus 77 HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 77 HESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp --SSEEEEE-ETTEEEEEE
T ss_pred cCCCcEEEE-ECCEEEEEC
Confidence 57999999 899999874
No 373
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=94.57 E-value=5.3 Score=39.79 Aligned_cols=308 Identities=17% Similarity=0.237 Sum_probs=144.2
Q ss_pred EEEEEecCCCHh--hHhh---HHHHHHHHHH-hcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 40 IGLYFSASWCGP--CQRF---TPILAEVYNE-LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 40 vlv~F~a~wC~~--C~~~---~p~l~~~~~~-~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
++|+|+.|--.. .+++ ...+-+++.+ +.++ .+.+..|+...+. .+++++
T Consensus 54 l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~-gigfg~VD~~Kd~------------------------klAKKL 108 (383)
T PF01216_consen 54 LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDK-GIGFGMVDSKKDA------------------------KLAKKL 108 (383)
T ss_dssp EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGC-TEEEEEEETTTTH------------------------HHHHHH
T ss_pred EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhcccc-CcceEEeccHHHH------------------------HHHHhc
Confidence 667777665322 2111 1223344444 4455 4889988888763 599999
Q ss_pred CCCCccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHHHHHHHHHhhcccccccccCCCce-eecCCCceeee
Q 008336 114 KVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF-VISSDGRKISV 192 (569)
Q Consensus 114 ~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~d~-~~~~~~~~~~~ 192 (569)
|+...++++++ ++|+++.++|. ++...+.+++-.- + ..|. +++..-+.-..
T Consensus 109 gv~E~~SiyVf-kd~~~IEydG~------------~saDtLVeFl~dl------------~---edPVeiIn~~~e~~~F 160 (383)
T PF01216_consen 109 GVEEEGSIYVF-KDGEVIEYDGE------------RSADTLVEFLLDL------------L---EDPVEIINNKHELKAF 160 (383)
T ss_dssp T--STTEEEEE-ETTEEEEE-S--------------SHHHHHHHHHHH------------H---SSSEEEE-SHHHHHHH
T ss_pred CccccCcEEEE-ECCcEEEecCc------------cCHHHHHHHHHHh------------c---ccchhhhcChhhhhhh
Confidence 99999999999 78988877653 3344444433211 0 0111 12111110000
Q ss_pred ccc-cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHh
Q 008336 193 SDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (569)
Q Consensus 193 ~~~-~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~ 271 (569)
... +...++-||.....++.+ .+.++++.+..- + -.|+.++ +.+++
T Consensus 161 e~ied~~klIGyFk~~~s~~yk----~FeeAAe~F~p~---I-kFfAtfd-------------------------~~vAk 207 (383)
T PF01216_consen 161 ERIEDDIKLIGYFKSEDSEHYK----EFEEAAEHFQPY---I-KFFATFD-------------------------KKVAK 207 (383)
T ss_dssp HH--SS-EEEEE-SSTTSHHHH----HHHHHHHHCTTT---S-EEEEE-S-------------------------HHHHH
T ss_pred hhcccceeEEEEeCCCCcHHHH----HHHHHHHhhcCc---e-eEEEEec-------------------------chhhh
Confidence 011 234566667666555544 445566666432 1 2233333 45667
Q ss_pred hcccCCCceEEEECCCC-CchhhhhHHHHHhhCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhhccCCccceecCCCCce
Q 008336 272 YFELSTLPTLVIIGPDG-KTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDFVVGKNGGKV 350 (569)
Q Consensus 272 ~f~v~~~Ptlvi~~~~g-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~~~~~g~~v 350 (569)
.++++ .=.+-++.+-- +.+. +..-|.+.+.+.++++.-+ .+++..+.... =|. +
T Consensus 208 ~L~lK-~nev~fyepF~~~pi~-----------ip~~p~~e~e~~~fi~~h~----rptlrkl~~~~--m~e-------~ 262 (383)
T PF01216_consen 208 KLGLK-LNEVDFYEPFMDEPIT-----------IPGKPYTEEELVEFIEEHK----RPTLRKLRPED--MFE-------T 262 (383)
T ss_dssp HHT-S-TT-EEEE-TTSSSEEE-----------ESSSS--HHHHHHHHHHT-----S-SEEE--GGG--HHH-------H
T ss_pred hcCcc-ccceeeeccccCCCcc-----------CCCCCCCHHHHHHHHHHhc----hhHhhhCChhh--hhh-------h
Confidence 77765 32333333211 1100 0012556777777766333 23333221100 011 1
Q ss_pred ecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHH
Q 008336 351 PVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLS 430 (569)
Q Consensus 351 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 430 (569)
--++..| ..+|.|--.--|.-..++..|+++++...+. .++.||+|..|.-+--. .-.-
T Consensus 263 Wedd~~g-~hIvaFaee~dpdG~efleilk~va~~nt~n-p~LsivwIDPD~fPllv-------------------~yWE 321 (383)
T PF01216_consen 263 WEDDIDG-IHIVAFAEEEDPDGFEFLEILKQVARDNTDN-PDLSIVWIDPDDFPLLV-------------------PYWE 321 (383)
T ss_dssp HHSSSSS-EEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-GGG-HHHH-------------------HHHH
T ss_pred hcccCCC-ceEEEEecCCCCchHHHHHHHHHHHHhcCcC-CceeEEEECCCCCchhH-------------------HHHH
Confidence 1122324 5556676667788899999999999887654 57999999877654211 1233
Q ss_pred HhcCCC-CccEEEEECCCC-cEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 008336 431 RKFKVS-GIPMLVAIGPSG-RTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGWP 489 (569)
Q Consensus 431 ~~~~v~-~~Pt~~lid~~G-~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~~ 489 (569)
+.|+|. .-|.+=++|-.- .-+.....+ .-.-...++|+.-|+..+.+.-
T Consensus 322 ~tF~Idl~~PqIGvVnvtdadsvW~dm~d----------~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 322 KTFGIDLSRPQIGVVNVTDADSVWMDMDD----------DDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp HHHTT-TTS-EEEEEETTTSEEEEC-STT----------TSS---HHHHHHHHHHHHCTCC
T ss_pred hhcCccccCCceeEEeccccccchhccCC----------cccCCcHHHHHHHHHHHhcCCC
Confidence 456654 248888887543 233332211 1123467788888988886654
No 374
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.56 E-value=0.19 Score=38.39 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=38.0
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC-Ccc
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-GIP 439 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-~~P 439 (569)
+..|..+|||+|.+....|++. ++.+-.++++.+++.. .++.+..+.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~-------------------~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALR-------------------EEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHH-------------------HHHHHHhCCCCccC
Confidence 4578899999999988877541 2455556666554322 2344555666 899
Q ss_pred EEEEECCCCcEE
Q 008336 440 MLVAIGPSGRTI 451 (569)
Q Consensus 440 t~~lid~~G~i~ 451 (569)
.++ + +|+.+
T Consensus 54 ~v~-i--~g~~i 62 (75)
T cd03418 54 QIF-I--GDVHI 62 (75)
T ss_pred EEE-E--CCEEE
Confidence 774 4 35554
No 375
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.51 E-value=0.33 Score=36.93 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=35.2
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEE
Q 008336 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPML 441 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~ 441 (569)
..|..++||+|++....|++ . ++.+-.++++.+++.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~--~i~~~~~di~~~~~~~-------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H--GIAFEEINIDEQPEAI-------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C--CCceEEEECCCCHHHH-------------------HHHH-HcCCcccCEE
Confidence 45778999999999888753 1 3556666777654321 1233 3488899997
Q ss_pred EE
Q 008336 442 VA 443 (569)
Q Consensus 442 ~l 443 (569)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 55
No 376
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.43 E-value=0.14 Score=39.75 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=37.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+..|+.+|||+|.+....|++. ++.+-.++++.++... .++.+..+...+|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~-------------------~~~~~~~g~~~vP~ 52 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALR-------------------DEMMQRSGRRTVPQ 52 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHH-------------------HHHHHHhCCCCcCE
Confidence 3568899999999999887642 2334444555554211 23555567889999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
++ + +|+.+
T Consensus 53 i~-i--~g~~i 60 (79)
T TIGR02181 53 IF-I--GDVHV 60 (79)
T ss_pred EE-E--CCEEE
Confidence 74 4 35544
No 377
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.38 E-value=0.16 Score=38.63 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=35.5
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
..|..++||+|++....|.+ .+ +.+-.++++.+++.. ..+. ..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~-i~~~~~di~~~~~~~--------------------~~~~-~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG-IAFEEINIDEQPEAI--------------------DYVK-AQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHHH-HcCCcccCEE
Confidence 45778999999998877764 23 666677777664421 1232 3477889986
Q ss_pred EE
Q 008336 122 VI 123 (569)
Q Consensus 122 ~l 123 (569)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 54
No 378
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.31 E-value=0.48 Score=45.83 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=75.3
Q ss_pred cccee-cCCCCceeccc-CCCCEEEEEEec-CCChhHHhhhHHHHH-HHHHHhhc-CCCeEEEEEeCCCChhHHHHHHh-
Q 008336 339 LDFVV-GKNGGKVPVSD-LAGKTILLYFSA-HWCPPCRAFLPKLID-AYKKIKER-NESLEVVFISSDRDQTSFDEFFK- 412 (569)
Q Consensus 339 ~~f~~-~~~g~~v~l~~-~~gk~vll~F~a-~wC~~C~~~~~~l~~-l~~~~~~~-~~~~~vv~is~d~~~~~~~~~~~- 412 (569)
|++.. +..|+.+++.+ ++||+.||..+. .|- ..+...+.. ..+++... ...+++|-|++-.+. ++.++.
T Consensus 102 P~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~g---e~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~--~k~~l~~ 176 (252)
T PF05176_consen 102 PNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWG---EEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENW--LKSWLVK 176 (252)
T ss_pred CCCccccCCCCCcccccccCCceEEEEEeehHHH---HHHHHHHhhHHHHHHhhCCCCceEEEEEecchHH--HHHHHHH
Confidence 67765 67777776654 578976665554 343 333333222 33444332 126889999886542 222221
Q ss_pred ----cC----C---CcccccCch--hhHHHHHhcCCC--CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHH
Q 008336 413 ----GM----P---WLALPFGDA--RKASLSRKFKVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEI 477 (569)
Q Consensus 413 ----~~----~---~~~~~~~~d--~~~~l~~~~~v~--~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l 477 (569)
.+ | |-.+-+..+ ....+.+.+++. -+.-+||+|++|+|++...| +-++.+++.|
T Consensus 177 ~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG-----------~At~~E~~~L 245 (252)
T PF05176_consen 177 LFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSG-----------PATPEELESL 245 (252)
T ss_pred HHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccC-----------CCCHHHHHHH
Confidence 11 1 322222222 245677777775 45779999999999998543 3577888888
Q ss_pred HHHhhh
Q 008336 478 DGQYNE 483 (569)
Q Consensus 478 ~~~l~~ 483 (569)
.+.++.
T Consensus 246 ~k~~~~ 251 (252)
T PF05176_consen 246 WKCVKG 251 (252)
T ss_pred HHHHhc
Confidence 776653
No 379
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=94.26 E-value=0.25 Score=45.62 Aligned_cols=108 Identities=20% Similarity=0.381 Sum_probs=73.3
Q ss_pred CCceecC-CCceeecCCC-CCc--EEEEEe------cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHH
Q 008336 20 RDFLIRS-NGDQVKLDSL-KGK--IGLYFS------ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (569)
Q Consensus 20 pdf~~~~-~g~~v~l~~~-~gk--vlv~F~------a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~ 89 (569)
.++..+. +|+ ++|+++ .|+ ++|+.+ ..-|+.|...+..+......+...+ +.++.|+-. ..+.+.+|
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd-~tfa~vSra-P~~~i~af 123 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD-TTFAVVSRA-PLEKIEAF 123 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC-ceEEEEeCC-CHHHHHHH
Confidence 3454443 555 999886 777 555532 4679999999999977777887764 888888766 67889999
Q ss_pred HHhCCCcccccCCchhHHHHHHhcCC-----CCccEEEEECC-CCcEEE
Q 008336 90 FSKMPWLAVPFSDSETRDKLDELFKV-----MGIPHLVILDE-NGKVLS 132 (569)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~-~G~i~~ 132 (569)
.++++|....++.... .+...|++ ...|.+-++-+ +|+|..
T Consensus 124 k~rmGW~~pw~Ss~gs--~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 124 KRRMGWTFPWYSSYGS--DFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred HHhcCCCceEEEcCCC--cccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 9999999665654433 35556776 45565533333 355543
No 380
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.12 E-value=0.11 Score=45.90 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=31.6
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~ 79 (569)
.++ +++.|+.++||+|+++.|.+.++..++. ++.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeC
Confidence 467 8999999999999999999999877653 455665443
No 381
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.09 E-value=0.22 Score=37.81 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=38.3
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|.+....|.+ . ++.+..++++.+.. ...+.+..+...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~-----~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N-----GISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c-----CCCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 566889999999999877753 2 24455556654431 123455568899999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+ ++| |+.+
T Consensus 54 i-fi~--g~~i 61 (72)
T cd03029 54 V-FID--GELI 61 (72)
T ss_pred E-EEC--CEEE
Confidence 7 453 5554
No 382
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.08 E-value=0.19 Score=44.93 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=38.0
Q ss_pred cccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCC
Q 008336 352 VSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSD 401 (569)
Q Consensus 352 l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d 401 (569)
+-+...+++|+.|+...||+|.++.+.+.++.+++-+. ..+.+++..+-
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~-~~v~~~~~~~~ 55 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDP-GKVKFVFRPVP 55 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-TTEEEEEEESS
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCC-CceEEEEEEcc
Confidence 34445789999999999999999999999999998221 24888888774
No 383
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.03 E-value=0.1 Score=46.13 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=32.1
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
++++++.|+.++||+|+++.|.+.++..++. ++.++....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence 6899999999999999999999988776653 255655543
No 384
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.95 E-value=0.27 Score=37.47 Aligned_cols=61 Identities=23% Similarity=0.264 Sum_probs=39.7
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+||++|++....|++ . ++.+..++++.+++. ..++.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~--gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K--GLPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C--CCceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 456788999999999887764 1 355566676655432 234555667778898
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 55 v~i---~~~~iG 63 (73)
T cd03027 55 IFF---NEKLVG 63 (73)
T ss_pred EEE---CCEEEe
Confidence 844 355544
No 385
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.22 Score=43.22 Aligned_cols=79 Identities=27% Similarity=0.341 Sum_probs=53.0
Q ss_pred cccCccCCceec--------CCCceeecCCC-CCc-EEEEEe--cCCCHh-hHhhHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 14 LLSSSARDFLIR--------SNGDQVKLDSL-KGK-IGLYFS--ASWCGP-CQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 14 ~~g~~~pdf~~~--------~~g~~v~l~~~-~gk-vlv~F~--a~wC~~-C~~~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
-+|+..|+..+. ..+.++.++++ +|| ++| |- +...|. |+...|-+.+-+++|+.+|-=+|+.|+++
T Consensus 10 ~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 10 AVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred cccCccccccchhhccCccccccceEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 457788883111 12337888886 788 555 43 223344 67889999999999999884467778887
Q ss_pred CCHHHHHHHHHhCC
Q 008336 81 EDDEAFKGYFSKMP 94 (569)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (569)
++-....|.+..+
T Consensus 89 -DpFv~~aW~k~~g 101 (171)
T KOG0541|consen 89 -DPFVMKAWAKSLG 101 (171)
T ss_pred -cHHHHHHHHhhcC
Confidence 5666666666554
No 386
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.87 E-value=0.26 Score=40.12 Aligned_cols=61 Identities=28% Similarity=0.455 Sum_probs=38.2
Q ss_pred EEEEEe----cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 40 IGLYFS----ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 40 vlv~F~----a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
|+|+-. +||||+|.+....|.+. + +.+..++++.+.+ .+ ..+.+..|.
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~-i~~~~~di~~~~~-~~-------------------~~l~~~tg~ 65 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKAC-------G-VPFAYVNVLEDPE-IR-------------------QGIKEYSNW 65 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHc-------C-CCEEEEECCCCHH-HH-------------------HHHHHHhCC
Confidence 655543 38999999887666553 2 4555666665533 11 245566677
Q ss_pred CCccEEEEECCCCcEE
Q 008336 116 MGIPHLVILDENGKVL 131 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~ 131 (569)
..+|.+++ +|+.+
T Consensus 66 ~tvP~vfi---~g~~i 78 (97)
T TIGR00365 66 PTIPQLYV---KGEFV 78 (97)
T ss_pred CCCCEEEE---CCEEE
Confidence 88998764 46544
No 387
>PRK10638 glutaredoxin 3; Provisional
Probab=93.82 E-value=0.27 Score=38.65 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=38.8
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+. + +....++++.+.+. ...+.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------g-i~y~~~dv~~~~~~--------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------G-VSFQEIPIDGDAAK--------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C-CCcEEEECCCCHHH--------------------HHHHHHHhCCCCcCE
Confidence 4557789999999887776643 2 45555677655431 124556667888997
Q ss_pred EEEECCCCcEE
Q 008336 121 LVILDENGKVL 131 (569)
Q Consensus 121 ~~lid~~G~i~ 131 (569)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 744 46554
No 388
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.64 E-value=0.24 Score=46.60 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHH---HHHHHHhcCCCCEEEEEE
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFV 77 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~g~~~vv~v 77 (569)
.|+ .+|.|+.-.||||.++.+.+ ..+.+.+.+. +.++.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~--v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG--TKMTKY 78 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC--CeEEEe
Confidence 578 89999999999999998876 6777777543 444443
No 389
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.59 E-value=0.16 Score=41.59 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=37.4
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|.+....|.++ . +..-.+.+|.+++.. +....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~-----i~~~~vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----G-----VNPAVHEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C-----CCCEEEEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 5568899999999988766542 2 223345555443211 11123555567889999
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+ +| +|+.+
T Consensus 65 V-fi--~g~~i 72 (99)
T TIGR02189 65 V-FV--GGKLV 72 (99)
T ss_pred E-EE--CCEEE
Confidence 7 45 35544
No 390
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.45 E-value=0.44 Score=39.74 Aligned_cols=62 Identities=11% Similarity=0.321 Sum_probs=51.7
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.|.|+|-|.-.|-|.|..+-..|.+.++.++.- ..|..+.+|..+ .+.+.|++.
T Consensus 23 ~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~-----------------------~~~~~~~l~ 76 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVP-----------------------DFVKMYELY 76 (142)
T ss_pred ceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhh-----------------------hhhhhhccc
Confidence 689999999999999999999999999998753 566667777554 478889999
Q ss_pred CccEEEEE
Q 008336 437 GIPMLVAI 444 (569)
Q Consensus 437 ~~Pt~~li 444 (569)
..|+++++
T Consensus 77 ~p~tvmfF 84 (142)
T KOG3414|consen 77 DPPTVMFF 84 (142)
T ss_pred CCceEEEE
Confidence 99987765
No 391
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.54 Score=50.97 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=51.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
+|||+|..-.+||-+|.-|...= .++++-+.+ .+|.|.+|++.- |..+..-..+++..
T Consensus 43 dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-----~FV~IKVDREER--------------PDvD~~Ym~~~q~~ 103 (667)
T COG1331 43 DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-----NFVPVKVDREER--------------PDVDSLYMNASQAI 103 (667)
T ss_pred CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-----CceeeeEChhhc--------------cCHHHHHHHHHHHh
Confidence 79999999999999999987541 223333322 468888887531 11111112333333
Q ss_pred -CCCCccEEEEECCCCcEEEc
Q 008336 434 -KVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 434 -~v~~~Pt~~lid~~G~i~~~ 453 (569)
|-.|.|-++|+-|+|+..+.
T Consensus 104 tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred ccCCCCceeEEECCCCceeee
Confidence 44589999999999999876
No 392
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.3 Score=42.17 Aligned_cols=116 Identities=22% Similarity=0.307 Sum_probs=70.7
Q ss_pred ccccCccCCceec-C------CC-ceeecCCC-CCcEEEEEe--cCCCHhhHh-hHHHHHHHHHHhcCCCCEEEEEEeCC
Q 008336 13 SLLSSSARDFLIR-S------NG-DQVKLDSL-KGKIGLYFS--ASWCGPCQR-FTPILAEVYNELSRQGDFEVIFVSGD 80 (569)
Q Consensus 13 ~~~g~~~pdf~~~-~------~g-~~v~l~~~-~gkvlv~F~--a~wC~~C~~-~~p~l~~~~~~~~~~g~~~vv~v~~d 80 (569)
..+|+..|..+.. . .| ..++..++ +||.+|.|. +...|.|.. .+|.+.+++++++.+|-=.|+.|+++
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 4578888987442 1 12 34444444 788334454 233455544 79999999999999984467777777
Q ss_pred CCHHHHHHHHHhCCCc-cccc-CCchhHHHHHHhcC-----------CCCccEEEEECCCCcEEE
Q 008336 81 EDDEAFKGYFSKMPWL-AVPF-SDSETRDKLDELFK-----------VMGIPHLVILDENGKVLS 132 (569)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~i~~ 132 (569)
+.-...+|.+..+.. .+.+ +|.. .++.+..| +++-....++ +||.+..
T Consensus 83 -D~FVm~AWak~~g~~~~I~fi~Dg~--geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~ 143 (165)
T COG0678 83 -DAFVMNAWAKSQGGEGNIKFIPDGN--GEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEK 143 (165)
T ss_pred -cHHHHHHHHHhcCCCccEEEecCCC--chhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEE
Confidence 566667777766654 3333 2222 24555443 4455566777 6787764
No 393
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=0.19 Score=46.11 Aligned_cols=92 Identities=22% Similarity=0.499 Sum_probs=65.4
Q ss_pred cceecCCCCceecccC-CCCEEEE---EEecC----CChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHH
Q 008336 340 DFVVGKNGGKVPVSDL-AGKTILL---YFSAH----WCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFF 411 (569)
Q Consensus 340 ~f~~~~~g~~v~l~~~-~gk~vll---~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 411 (569)
+++.+...-+.+|++| .||.-|| ++++| .|+.|...+..+.-....+... ++.++.||--. .+.+..+.
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~--dv~lv~VsRAP-l~~l~~~k 130 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH--DVTLVAVSRAP-LEELVAYK 130 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc--CceEEEEecCc-HHHHHHHH
Confidence 5666443346777775 4563333 23345 5999999999997777777655 68888887543 37888999
Q ss_pred hcCCCcccccCchhhHHHHHhcCC
Q 008336 412 KGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 412 ~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
++|+|- ||..+.....+.+.|+|
T Consensus 131 ~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 131 RRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HhcCCc-ceeEeccCccccccccc
Confidence 999987 88877777777777766
No 394
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=93.18 E-value=2.9 Score=36.80 Aligned_cols=129 Identities=14% Similarity=0.306 Sum_probs=68.8
Q ss_pred ccCccCCceecC------CC-----ceeecCCCCCcEEEEEecCCCHhhHhh-HHHHHHHHHH-hcCCCCEEEEEE-eCC
Q 008336 15 LSSSARDFLIRS------NG-----DQVKLDSLKGKIGLYFSASWCGPCQRF-TPILAEVYNE-LSRQGDFEVIFV-SGD 80 (569)
Q Consensus 15 ~g~~~pdf~~~~------~g-----~~v~l~~~~gkvlv~F~a~wC~~C~~~-~p~l~~~~~~-~~~~g~~~vv~v-~~d 80 (569)
+|.+.|...++. +| +..+.+.+.|||.|.++-..-+.-+.+ .|.+..+.+. |... .++...| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d-~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD-KYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc-ceeEEEEEecc
Confidence 578888875432 33 355667889993333433223333444 4444555444 4443 3555444 565
Q ss_pred C----CHHHHHHHHH----hCCCcccccCCchhHHHHHHhcCCCC-ccEEEEECCCCcEEEcCCcceeecccCCCCCccH
Q 008336 81 E----DDEAFKGYFS----KMPWLAVPFSDSETRDKLDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTV 151 (569)
Q Consensus 81 ~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~ 151 (569)
+ +..-++..++ +++|..+. .|.+. .+.+.++... --.++++|++|+|+.. ..| ..++
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~v-lD~~G--~~~~aW~L~~~~SaiiVlDK~G~V~F~-------k~G----~Ls~ 147 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFV-LDSNG--VVRKAWQLQEESSAIIVLDKQGKVQFV-------KEG----ALSP 147 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEE-EcCCC--ceeccccCCCCCceEEEEcCCccEEEE-------ECC----CCCH
Confidence 3 2233444443 33443332 33332 3556666643 3567899999999873 222 4567
Q ss_pred HHHHHHH
Q 008336 152 ERIKEMK 158 (569)
Q Consensus 152 ~~i~~~~ 158 (569)
.++..++
T Consensus 148 ~Ev~qVi 154 (160)
T PF09695_consen 148 AEVQQVI 154 (160)
T ss_pred HHHHHHH
Confidence 7666554
No 395
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.17 E-value=0.41 Score=38.31 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=34.3
Q ss_pred CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC
Q 008336 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (569)
Q Consensus 47 ~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (569)
+|||+|.+....|.+. + +.+..++++.+.+ . ...+.+..|...+|.++ +
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~-i~y~~idv~~~~~-~-------------------~~~l~~~~g~~tvP~vf-i-- 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------G-VDFGTFDILEDEE-V-------------------RQGLKEYSNWPTFPQLY-V-- 69 (90)
T ss_pred CCCcHHHHHHHHHHHc-------C-CCeEEEEcCCCHH-H-------------------HHHHHHHhCCCCCCEEE-E--
Confidence 7999999877666554 2 4455556655432 1 13466667888999874 4
Q ss_pred CCcEE
Q 008336 127 NGKVL 131 (569)
Q Consensus 127 ~G~i~ 131 (569)
+|+.+
T Consensus 70 ~g~~i 74 (90)
T cd03028 70 NGELV 74 (90)
T ss_pred CCEEE
Confidence 46543
No 396
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.96 E-value=0.48 Score=42.84 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
+...|++-||-+.-..|+-+-..|+.+++.+-+ ..+|-|+....+ -++.+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~P-----------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAP-----------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCc-----------------------eeeeeeee
Confidence 356899999999889999999999999988753 467777666554 37889999
Q ss_pred CCccEEEEECCCCcEEEccc
Q 008336 436 SGIPMLVAIGPSGRTITKEA 455 (569)
Q Consensus 436 ~~~Pt~~lid~~G~i~~~~~ 455 (569)
+.+|++.++ ++|+.+.+-.
T Consensus 136 kVLP~v~l~-k~g~~~D~iV 154 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDYVV 154 (211)
T ss_pred eEeeeEEEE-EcCEEEEEEe
Confidence 999999999 8998887743
No 397
>PRK10638 glutaredoxin 3; Provisional
Probab=92.68 E-value=0.67 Score=36.33 Aligned_cols=61 Identities=15% Similarity=0.282 Sum_probs=38.9
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
++.|..+|||+|++....|.+. ++....++++.+... ..++.+..+...+|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4567789999999998877642 234444566654321 124556668889998
Q ss_pred EEEECCCCcEEE
Q 008336 441 LVAIGPSGRTIT 452 (569)
Q Consensus 441 ~~lid~~G~i~~ 452 (569)
+++ +|+.+.
T Consensus 56 i~~---~g~~ig 64 (83)
T PRK10638 56 IFI---DAQHIG 64 (83)
T ss_pred EEE---CCEEEe
Confidence 744 466654
No 398
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.57 Score=36.56 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=33.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH-HHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD-EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++.|.-++||+|.+....|. ..| +...-+.++... +..+. .+.+..|.+.+|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g-~~~~~i~~~~~~~~~~~~-------------------~~~~~~g~~tvP 55 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG-VDYEEIDVDDDEPEEARE-------------------MVKRGKGQRTVP 55 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC-CCcEEEEecCCcHHHHHH-------------------HHHHhCCCCCcC
Confidence 45677899999998766655 233 444454554332 11111 233334889999
Q ss_pred EEEE
Q 008336 120 HLVI 123 (569)
Q Consensus 120 ~~~l 123 (569)
.+++
T Consensus 56 ~I~i 59 (80)
T COG0695 56 QIFI 59 (80)
T ss_pred EEEE
Confidence 8776
No 399
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=92.41 E-value=0.052 Score=50.42 Aligned_cols=69 Identities=22% Similarity=0.493 Sum_probs=50.4
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCc
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
-.++.|+++|||.|....|.|...+.--.+- ++.|..|.+..++ -+.-+|-|...
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL--~v~va~VDvt~np-----------------------gLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDL--GVKVAKVDVTTNP-----------------------GLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCC--ceeEEEEEEEecc-----------------------ccceeeEEEec
Confidence 5778999999999999999987765443332 4555555544333 25667889999
Q ss_pred cEEEEECCCCcEEEc
Q 008336 439 PMLVAIGPSGRTITK 453 (569)
Q Consensus 439 Pt~~lid~~G~i~~~ 453 (569)
||+|=+ ++|..+..
T Consensus 96 ptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRRY 109 (248)
T ss_pred ceEEEe-eccccccc
Confidence 999998 88987654
No 400
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=92.19 E-value=0.083 Score=36.32 Aligned_cols=32 Identities=34% Similarity=0.695 Sum_probs=28.7
Q ss_pred eeccCCCCCCCceeEEcCCCC-CCccccccCCc
Q 008336 509 YSCDGCDEEGRVWAFSCDECD-FCLHPNCALGE 540 (569)
Q Consensus 509 ~~c~~C~~~g~~~~~~~~~~~-~~~~~~~~~~~ 540 (569)
|.|++|...-.+-.|+|.+|. |||...|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 579999998888999999998 99999999754
No 401
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.18 E-value=0.57 Score=37.47 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=38.5
Q ss_pred CCEEEEEEec----CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
+++|+|+--. +|||+|.+....|.+.. +.+..++++.+.+ . ...+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~-~------------------~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEE-V------------------RQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHH-H------------------HHHHHHH
Confidence 4566665433 79999999888775532 3334444444432 1 2346666
Q ss_pred cCCCCccEEEEECCCCcEE
Q 008336 433 FKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~ 451 (569)
.+...+|.++ + +|+.+
T Consensus 59 ~g~~tvP~vf-i--~g~~i 74 (90)
T cd03028 59 SNWPTFPQLY-V--NGELV 74 (90)
T ss_pred hCCCCCCEEE-E--CCEEE
Confidence 7888999974 4 36554
No 402
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.10 E-value=0.34 Score=52.61 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
.+.++ -+..|.+++||+|+.....+++++.... ++..-.|+....+ ++...|
T Consensus 113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~------------------------~~~~~~ 165 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQ------------------------DEVEAR 165 (517)
T ss_pred hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCH------------------------hHHHhc
Confidence 34456 7888999999999999888888877532 4666666554443 588899
Q ss_pred CCCCccEEEE
Q 008336 114 KVMGIPHLVI 123 (569)
Q Consensus 114 ~v~~~P~~~l 123 (569)
++.++|++++
T Consensus 166 ~v~~VP~~~i 175 (517)
T PRK15317 166 NIMAVPTVFL 175 (517)
T ss_pred CCcccCEEEE
Confidence 9999999976
No 403
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.05 E-value=0.86 Score=37.45 Aligned_cols=64 Identities=28% Similarity=0.452 Sum_probs=40.4
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
-+|.|..+||++|++...-|.. +.. ...++-++-+.+...++++ +.+.-+-+.+|
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~-------------------l~~~tg~~tvP 69 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKA-------------------LKKLTGQRTVP 69 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHH-------------------HHHhcCCCCCC
Confidence 4567999999999985444443 322 3566666665554444443 44445567899
Q ss_pred EEEEECCCCcEE
Q 008336 120 HLVILDENGKVL 131 (569)
Q Consensus 120 ~~~lid~~G~i~ 131 (569)
.+|| +|+.+
T Consensus 70 ~vFI---~Gk~i 78 (104)
T KOG1752|consen 70 NVFI---GGKFI 78 (104)
T ss_pred EEEE---CCEEE
Confidence 8776 57766
No 404
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=92.02 E-value=0.68 Score=37.62 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=39.0
Q ss_pred CCEEEEEEe----cCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFS----AHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+.|+|+-. .+|||+|.+....|.++ ++.+..++++.+++. ...+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~-------------------~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEI-------------------RQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHH-------------------HHHHHHH
Confidence 345555544 38999999988877542 233444555544321 1245555
Q ss_pred cCCCCccEEEEECCCCcEEE
Q 008336 433 FKVSGIPMLVAIGPSGRTIT 452 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~~ 452 (569)
.|...+|.++ | +|+.+.
T Consensus 63 tg~~tvP~vf-i--~g~~iG 79 (97)
T TIGR00365 63 SNWPTIPQLY-V--KGEFVG 79 (97)
T ss_pred hCCCCCCEEE-E--CCEEEe
Confidence 6778899886 4 355543
No 405
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.93 Score=39.26 Aligned_cols=96 Identities=17% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCCCEEEEEEe--cCCChhHHh-hhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCc-ccccCchhhHHHH
Q 008336 355 LAGKTILLYFS--AHWCPPCRA-FLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWL-ALPFGDARKASLS 430 (569)
Q Consensus 355 ~~gk~vll~F~--a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~-~~~~~~d~~~~l~ 430 (569)
++||.|+| |. +...|.|.. .+|.+.+++.+++++. =-.|+.||+++ .-...+|.+..+.- .+.++.|.+.++.
T Consensus 35 f~gKkVvl-f~lPGAFTPTCS~~hlPgY~~~~d~f~~kG-VD~I~cVSVND-~FVm~AWak~~g~~~~I~fi~Dg~geFT 111 (165)
T COG0678 35 FKGKKVVL-FSLPGAFTPTCSSSHLPGYLELADEFKAKG-VDEIYCVSVND-AFVMNAWAKSQGGEGNIKFIPDGNGEFT 111 (165)
T ss_pred cCCCEEEE-EeCCCccCCCcccccCccHHHHHHHHHHcC-CceEEEEEeCc-HHHHHHHHHhcCCCccEEEecCCCchhh
Confidence 35765554 44 456778877 8999999999999762 12677777774 45666777766654 6777788888888
Q ss_pred HhcC-----------CCCccEEEEECCCCcEEEcc
Q 008336 431 RKFK-----------VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 431 ~~~~-----------v~~~Pt~~lid~~G~i~~~~ 454 (569)
+..| +++.....++ .||++....
T Consensus 112 k~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 112 KAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred hhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 7765 3445566777 789887764
No 406
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=91.06 E-value=1.6 Score=35.88 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=50.6
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCC-c
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-I 118 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~ 118 (569)
++|+=-++.||-......+|.+.++...+. +.+..+.+-..++. ...++..|||.. -
T Consensus 22 ~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~--~~~y~l~v~~~R~v--------------------Sn~IAe~~~V~HeS 79 (105)
T PF11009_consen 22 VLIFKHSTRCPISAMALREFEKFWEESPDE--IPVYYLDVIEYRPV--------------------SNAIAEDFGVKHES 79 (105)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHH--------------------HHHHHHHHT----S
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhhcCCcc--ceEEEEEEEeCchh--------------------HHHHHHHhCCCcCC
Confidence 666558999999999999999998886542 78888888765542 246899999974 6
Q ss_pred cEEEEECCCCcEEEcC
Q 008336 119 PHLVILDENGKVLSDG 134 (569)
Q Consensus 119 P~~~lid~~G~i~~~~ 134 (569)
|.+++| ++|+++...
T Consensus 80 PQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 80 PQVILI-KNGKVVWHA 94 (105)
T ss_dssp SEEEEE-ETTEEEEEE
T ss_pred CcEEEE-ECCEEEEEC
Confidence 999999 789998753
No 407
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=1.3 Score=43.28 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=59.2
Q ss_pred eeecCCCceeeecc---ccCcEEEEEEecCC----cccchhhhHHHHHHHHHHhcCCCce---EEEEeeccccHHHHHHH
Q 008336 181 FVISSDGRKISVSD---LEGKTIGLYFSMSS----YKASAEFTPRLVEVYEKLKGKGESF---EIVLISLDDEEESFKRD 250 (569)
Q Consensus 181 ~~~~~~~~~~~~~~---~~gk~v~l~f~~~~----~~~c~~~~~~~~~~~~~~~~~~~~~---ei~~v~~d~~~~~~~~~ 250 (569)
-++..++++++... ...-.+.++|.+.. |..|.++..++.-++.+.+..+..- .+.|.-+|-++
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e------ 114 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE------ 114 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc------
Confidence 34555555554332 23345788888754 9999999999988888887554322 34555555543
Q ss_pred hcCCCcccccCCchhHHHHHhhcccCCCceEEEECCC
Q 008336 251 LGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 287 (569)
Q Consensus 251 ~~~~~~~~~~~~d~~~~~l~~~f~v~~~Ptlvi~~~~ 287 (569)
..++.+.|+++..|.++++.|.
T Consensus 115 ---------------~p~~Fq~l~ln~~P~l~~f~P~ 136 (331)
T KOG2603|consen 115 ---------------SPQVFQQLNLNNVPHLVLFSPA 136 (331)
T ss_pred ---------------cHHHHHHhcccCCCeEEEeCCC
Confidence 4677889999999999999874
No 408
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=90.97 E-value=1.7 Score=42.00 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=66.9
Q ss_pred cCccCCc-eecCCCceeecCC-CCCc--EEEEEecCCCHhhHhhHHHHHHHHHHhcCCC--CEEEEEEeCCCCHH--HHH
Q 008336 16 SSSARDF-LIRSNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDE--AFK 87 (569)
Q Consensus 16 g~~~pdf-~~~~~g~~v~l~~-~~gk--vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g--~~~vv~v~~d~~~~--~~~ 87 (569)
....|+| -.+++|+.+++.+ ++|| +|..|+.-|-..|... ......+++.... .++++-|++.++.- -+.
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~s--w~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDS--WTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHH--HhhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 3456888 4468888888864 5899 5555666664444332 1112344444343 69999999876532 122
Q ss_pred HHHH-hC----C---Cc-ccccCCchhHHHHHHhcCCC--CccEEEEECCCCcEEEcC
Q 008336 88 GYFS-KM----P---WL-AVPFSDSETRDKLDELFKVM--GIPHLVILDENGKVLSDG 134 (569)
Q Consensus 88 ~~~~-~~----~---~~-~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~i~~~~ 134 (569)
.++. .+ + +. ++......-...+.+.+++. -+..+||+|.+|+|+-..
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag 233 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG 233 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc
Confidence 2221 11 1 11 11112111124677788875 468899999999998753
No 409
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.86 E-value=0.31 Score=44.34 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEe
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFIS 399 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is 399 (569)
.+++.|+.|+...||+|+.+.+.+.++.++++++ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 4789999999999999999999999998887543 5555444
No 410
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=90.83 E-value=1.7 Score=36.87 Aligned_cols=59 Identities=17% Similarity=0.373 Sum_probs=46.8
Q ss_pred CCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC
Q 008336 357 GKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS 436 (569)
Q Consensus 357 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~ 436 (569)
.|.|+|-|.-.|=+.|.++-..|.+.+++.+.- ..|..+.++.-+ .+.+.|.+.
T Consensus 20 drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-----------------------dfn~~yel~ 73 (133)
T PF02966_consen 20 DRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-----------------------DFNQMYELY 73 (133)
T ss_dssp SSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-----------------------CCHHHTTS-
T ss_pred ceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-----------------------hhhcccccC
Confidence 699999999999999999999999999998754 667777777665 367788888
Q ss_pred CccEEE
Q 008336 437 GIPMLV 442 (569)
Q Consensus 437 ~~Pt~~ 442 (569)
.|.++
T Consensus 74 -dP~tv 78 (133)
T PF02966_consen 74 -DPCTV 78 (133)
T ss_dssp -SSEEE
T ss_pred -CCeEE
Confidence 77543
No 411
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=1.3 Score=34.52 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.5
Q ss_pred EEEEecCCChhHHhhhHHHH
Q 008336 361 LLYFSAHWCPPCRAFLPKLI 380 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~ 380 (569)
++.|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45678899999999887765
No 412
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.47 E-value=0.5 Score=42.72 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
+.. |++.||-+.-..|+-+-..|..+++.+-+ ..++-|+....+ -++.+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~P------------------------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAP------------------------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCc------------------------eeeeeeee
Confidence 344 99999999999999999999999998753 568888777542 37788999
Q ss_pred CCccEEEEECCCCcEEEc
Q 008336 116 MGIPHLVILDENGKVLSD 133 (569)
Q Consensus 116 ~~~P~~~lid~~G~i~~~ 133 (569)
..+|++.++ ++|..+.+
T Consensus 136 kVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eEeeeEEEE-EcCEEEEE
Confidence 999999999 78876653
No 413
>PRK10824 glutaredoxin-4; Provisional
Probab=90.33 E-value=0.95 Score=37.97 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=33.1
Q ss_pred CCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEEEEECC
Q 008336 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (569)
Q Consensus 47 ~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (569)
||||+|++....|.++- +..-.++++.+.+ .+ ..+.+.-|...+|.+|+
T Consensus 28 p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~-~~-------------------~~l~~~sg~~TVPQIFI--- 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACG--------ERFAYVDILQNPD-IR-------------------AELPKYANWPTFPQLWV--- 76 (115)
T ss_pred CCCchHHHHHHHHHHcC--------CCceEEEecCCHH-HH-------------------HHHHHHhCCCCCCeEEE---
Confidence 69999998877766542 2233345554433 22 23445557788898776
Q ss_pred CCcEE
Q 008336 127 NGKVL 131 (569)
Q Consensus 127 ~G~i~ 131 (569)
+|+.+
T Consensus 77 ~G~~I 81 (115)
T PRK10824 77 DGELV 81 (115)
T ss_pred CCEEE
Confidence 56655
No 414
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=89.70 E-value=3.6 Score=36.23 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=11.5
Q ss_pred CChhHHhhhHHHHH
Q 008336 368 WCPPCRAFLPKLID 381 (569)
Q Consensus 368 wC~~C~~~~~~l~~ 381 (569)
+|++|.+....|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999988877654
No 415
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.59 E-value=0.77 Score=42.31 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=61.5
Q ss_pred CCCceeecCCC-CCc--EEEE--EecC----CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCc
Q 008336 26 SNGDQVKLDSL-KGK--IGLY--FSAS----WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (569)
Q Consensus 26 ~~g~~v~l~~~-~gk--vlv~--F~a~----wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~ 96 (569)
.+| +.+|+++ .|+ +||| +++| -|+.|..++..+.-....|... ++.++.|+-- ..+.+..|-+.++|.
T Consensus 60 ~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~-dv~lv~VsRA-Pl~~l~~~k~rmGW~ 136 (247)
T COG4312 60 ENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH-DVTLVAVSRA-PLEELVAYKRRMGWQ 136 (247)
T ss_pred CCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc-CceEEEEecC-cHHHHHHHHHhcCCc
Confidence 345 6888876 777 5555 3455 6999999999998888888766 4888888765 567889999999998
Q ss_pred ccccCCchhHHHHHHhcCC
Q 008336 97 AVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v 115 (569)
+..++..+. .+...|++
T Consensus 137 f~w~Ss~~s--~Fn~Df~v 153 (247)
T COG4312 137 FPWVSSTDS--DFNRDFQV 153 (247)
T ss_pred ceeEeccCc--cccccccc
Confidence 666655443 34455555
No 416
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.59 E-value=1.3 Score=36.39 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=35.8
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
+|.|.-+||+.|.+....|.. +.. ...|+=+.-+.+..+++ ..+.+.-+.+.+|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v---~~~vvELD~~~~g~eiq------------------~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGV---NPKVVELDEDEDGSEIQ------------------KALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCC---CCEEEEccCCCCcHHHH------------------HHHHHhcCCCCCCE
Confidence 456899999999995544433 322 24444443332322222 23344445668898
Q ss_pred EEEECCCCcEE
Q 008336 441 LVAIGPSGRTI 451 (569)
Q Consensus 441 ~~lid~~G~i~ 451 (569)
+|| +|+-+
T Consensus 71 vFI---~Gk~i 78 (104)
T KOG1752|consen 71 VFI---GGKFI 78 (104)
T ss_pred EEE---CCEEE
Confidence 876 47776
No 417
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.57 E-value=2 Score=35.99 Aligned_cols=75 Identities=17% Similarity=0.372 Sum_probs=55.4
Q ss_pred CCceeecC--CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCc
Q 008336 27 NGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (569)
Q Consensus 27 ~g~~v~l~--~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (569)
+|..|+-+ +-..| |+|-|--.|-|.|.++-..|.+.+..+++- ..|..+++|+-+
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf--a~IylvdideV~-------------------- 67 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF--AVIYLVDIDEVP-------------------- 67 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc--eEEEEEecchhh--------------------
Confidence 44444443 33456 999999999999999999999999998743 455566666443
Q ss_pred hhHHHHHHhcCCCCccEEEEECCC
Q 008336 104 ETRDKLDELFKVMGIPHLVILDEN 127 (569)
Q Consensus 104 ~~~~~l~~~~~v~~~P~~~lid~~ 127 (569)
.+.+.|++...|+++++-.+
T Consensus 68 ----~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 68 ----DFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred ----hhhhhhcccCCceEEEEEcC
Confidence 47788999999998776433
No 418
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=89.14 E-value=0.37 Score=34.13 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=28.5
Q ss_pred cCeeeccCCCCCC---CceeEEcCCCCCCccccccCCc
Q 008336 506 CGVYSCDGCDEEG---RVWAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 506 ~~~~~c~~C~~~g---~~~~~~~~~~~~~~~~~~~~~~ 540 (569)
..+-.|+-|.+.- ..-.|+|..|++-+|.+|....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 6778999999986 6689999999999999999644
No 419
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.07 E-value=1.8 Score=33.75 Aligned_cols=56 Identities=23% Similarity=0.342 Sum_probs=42.1
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
|+.|..+.|+-|......|.++.... .+.+-.|+++.++ ++.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~-----------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDP-----------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTH-----------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCH-----------------------HHHHHhcC-CCCE
Confidence 56788999999999988876643332 4889999999765 37888995 7999
Q ss_pred EEEEC
Q 008336 441 LVAIG 445 (569)
Q Consensus 441 ~~lid 445 (569)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 77654
No 420
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=88.84 E-value=0.95 Score=49.11 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhc
Q 008336 35 SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (569)
Q Consensus 35 ~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (569)
.+.++ -+..|..+.||+|+.....+++++.... ++..-.|+.... .++...|
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~------------------------~~~~~~~ 166 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALF------------------------QDEVEAL 166 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HHHHHhc
Confidence 34566 7888999999999988888888776633 355555554444 3578999
Q ss_pred CCCCccEEEE
Q 008336 114 KVMGIPHLVI 123 (569)
Q Consensus 114 ~v~~~P~~~l 123 (569)
++.++|++++
T Consensus 167 ~v~~VP~~~i 176 (515)
T TIGR03140 167 GIQGVPAVFL 176 (515)
T ss_pred CCcccCEEEE
Confidence 9999999986
No 421
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=88.33 E-value=3.1 Score=35.83 Aligned_cols=92 Identities=21% Similarity=0.388 Sum_probs=57.6
Q ss_pred CEEEEEEecC--CChh-H-HhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhc
Q 008336 358 KTILLYFSAH--WCPP-C-RAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKF 433 (569)
Q Consensus 358 k~vll~F~a~--wC~~-C-~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~ 433 (569)
..-+|.|.-+ -|.. + ......|.+++++++++ .+.+++++.+... .+.+.|
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~-----------------------~~~~~f 75 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQL-----------------------DLEEAL 75 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccH-----------------------HHHHHc
Confidence 3455555432 2433 3 34567788899999865 3778888777653 377889
Q ss_pred CCC--CccEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 008336 434 KVS--GIPMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMAKGW 488 (569)
Q Consensus 434 ~v~--~~Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~~~~ 488 (569)
|+. ++|++++++.++. .+....+ +++.+ .|.+.++..+++.
T Consensus 76 gl~~~~~P~v~i~~~~~~-KY~~~~~----------~~t~e---~i~~Fv~~~l~Gk 118 (130)
T cd02983 76 NIGGFGYPAMVAINFRKM-KFATLKG----------SFSED---GINEFLRELSYGR 118 (130)
T ss_pred CCCccCCCEEEEEecccC-ccccccC----------ccCHH---HHHHHHHHHHcCC
Confidence 985 4999999988765 4441111 24444 4556666666654
No 422
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=87.63 E-value=0.36 Score=33.66 Aligned_cols=30 Identities=37% Similarity=0.773 Sum_probs=27.1
Q ss_pred eeccCCCCCCCc-eeEEcCCC-CCCccccccC
Q 008336 509 YSCDGCDEEGRV-WAFSCDEC-DFCLHPNCAL 538 (569)
Q Consensus 509 ~~c~~C~~~g~~-~~~~~~~~-~~~~~~~~~~ 538 (569)
|.|++|...... -.|+|.+| +|||=..|..
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 579999998876 89999999 9999999986
No 423
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=87.56 E-value=2.4 Score=35.54 Aligned_cols=52 Identities=10% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCC
Q 008336 380 IDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKV 435 (569)
Q Consensus 380 ~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v 435 (569)
.+...++... ++.+|+|.+... +..++|.+... ..+|+..|++..+-+.+++
T Consensus 3 ~~~~~~l~~~--gv~lv~I~~g~~-~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 3 SRRKPELEAA--GVKLVVIGCGSP-EGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hHhHHHHHHc--CCeEEEEEcCCH-HHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 3344555544 688888887754 34777776644 3555666666666555554
No 424
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=87.32 E-value=3.4 Score=32.15 Aligned_cols=56 Identities=34% Similarity=0.391 Sum_probs=41.9
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
|+.|..+.|+-|......|.++.... .+.+..|+++.++ .+..+|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~------------------------~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDP------------------------ELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTH------------------------HHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCH------------------------HHHHHhcC-CCCE
Confidence 67788999999998888877754432 4889999999764 37788995 7998
Q ss_pred EEEEC
Q 008336 121 LVILD 125 (569)
Q Consensus 121 ~~lid 125 (569)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66643
No 425
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=87.31 E-value=5.6 Score=33.61 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEEecCC--ChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHH
Q 008336 352 VSDLAGKTILLYFSAHW--CPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASL 429 (569)
Q Consensus 352 l~~~~gk~vll~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l 429 (569)
|++++++.-+|..+|+. -+.=+.++..|.+....+.++ ++.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 55667765555555543 334556666676666667666 56666653332211 1112222334567
Q ss_pred HHhcCCC-CccEEEEECCCCcEEEc
Q 008336 430 SRKFKVS-GIPMLVAIGPSGRTITK 453 (569)
Q Consensus 430 ~~~~~v~-~~Pt~~lid~~G~i~~~ 453 (569)
.+.|++. +.-+++||++||.+..+
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEe
Confidence 8888865 33578999999999887
No 426
>PRK10824 glutaredoxin-4; Provisional
Probab=87.05 E-value=1.3 Score=37.22 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=36.8
Q ss_pred CCEEEEEEec----CCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHh
Q 008336 357 GKTILLYFSA----HWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRK 432 (569)
Q Consensus 357 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~ 432 (569)
.+.|+|+--+ ||||+|++....|.++ .- .+.. +.++.+.+ .. ..+.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~i---~~~~--idi~~d~~-~~------------------~~l~~~ 65 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----GE---RFAY--VDILQNPD-IR------------------AELPKY 65 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc----CC---CceE--EEecCCHH-HH------------------HHHHHH
Confidence 3455554333 6999999998877653 21 2333 34454432 11 234444
Q ss_pred cCCCCccEEEEECCCCcEE
Q 008336 433 FKVSGIPMLVAIGPSGRTI 451 (569)
Q Consensus 433 ~~v~~~Pt~~lid~~G~i~ 451 (569)
-|-..+|.+|| +|+-|
T Consensus 66 sg~~TVPQIFI---~G~~I 81 (115)
T PRK10824 66 ANWPTFPQLWV---DGELV 81 (115)
T ss_pred hCCCCCCeEEE---CCEEE
Confidence 57778888776 46655
No 427
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=1.8 Score=32.63 Aligned_cols=70 Identities=19% Similarity=0.421 Sum_probs=44.4
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHh---cCCCcccccCchhhHHHHHhcCCCCc
Q 008336 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFK---GMPWLALPFGDARKASLSRKFKVSGI 438 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~---~~~~~~~~~~~d~~~~l~~~~~v~~~ 438 (569)
+.|++..||.|......|.++.-. ++ +|.+-.+-..+++|+. +++ .-+-.+..|--||
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-------yd--~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiGI 65 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-------YD--FVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIGI 65 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-------ce--eeehhhhhhhHHHHHhhhccch----------hHHhhhhcCcccc
Confidence 568999999998887766544222 23 3334444566777765 332 1123566788899
Q ss_pred cEEEEECCCCcEEE
Q 008336 439 PMLVAIGPSGRTIT 452 (569)
Q Consensus 439 Pt~~lid~~G~i~~ 452 (569)
|.+.+ .+|+++-
T Consensus 66 Pall~--~d~~vVl 77 (85)
T COG4545 66 PALLT--DDGKVVL 77 (85)
T ss_pred eEEEe--CCCcEEE
Confidence 99876 4677765
No 428
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.26 E-value=3.5 Score=31.07 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=46.3
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccEE
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (569)
+.|+|..||.|.....+|.++. +..=.|.+..+-.++++|+.-.. +...=.-.+.+|--|+|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~VeIt~Sm~NlKrFl~lRD--------s~~~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVEITESMANLKRFLHLRD--------SRPEFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeeehhhhhhhHHHHHhhhc--------cchhHHhhhhcCcccceEE
Confidence 4689999999987776666552 33344455566677888876332 1111123466788899987
Q ss_pred EEECCCCcEEE
Q 008336 122 VILDENGKVLS 132 (569)
Q Consensus 122 ~lid~~G~i~~ 132 (569)
.+ .+|+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 66 4676664
No 429
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=85.59 E-value=0.47 Score=32.86 Aligned_cols=31 Identities=32% Similarity=0.805 Sum_probs=27.2
Q ss_pred eeccCCCC-CCCceeEEcCCCC---CCccccccCC
Q 008336 509 YSCDGCDE-EGRVWAFSCDECD---FCLHPNCALG 539 (569)
Q Consensus 509 ~~c~~C~~-~g~~~~~~~~~~~---~~~~~~~~~~ 539 (569)
|.||+|.. .-.+-.|+|..|. |||=..|...
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 67999998 6688999999998 9999999853
No 430
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=84.47 E-value=14 Score=31.14 Aligned_cols=103 Identities=19% Similarity=0.188 Sum_probs=62.9
Q ss_pred ecCCCCCc--EEEEEe-cCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHH
Q 008336 32 KLDSLKGK--IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (569)
Q Consensus 32 ~l~~~~gk--vlv~F~-a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (569)
.|++++++ +||.|- ..--+.=..++..|.+....+.+. ++.++.+.-+..... ....+......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~------------~~~~~~~~~~~ 68 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSP------------GKPLSPEDIQA 68 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccc------------cCcCCHHHHHH
Confidence 36677777 555554 234456677788888877788877 477777744432110 01122223356
Q ss_pred HHHhcCCC-CccEEEEECCCCcEEEcCCcceeecccCCCCCccHHHHHHHH
Q 008336 109 LDELFKVM-GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMK 158 (569)
Q Consensus 109 l~~~~~v~-~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 158 (569)
+.+.|++. +.-+.+||+++|.+..+ ...|.+.+.|-+.+
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r-----------~~~p~~~~~lf~~I 108 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLR-----------WPEPIDPEELFDTI 108 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEe-----------cCCCCCHHHHHHHH
Confidence 88888865 33577999999988764 22356666665544
No 431
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=84.46 E-value=6.8 Score=33.38 Aligned_cols=61 Identities=16% Similarity=0.399 Sum_probs=46.3
Q ss_pred CCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCC
Q 008336 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (569)
Q Consensus 37 ~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (569)
..| |+|-|-..|-+.|.++-..|.+.+++++.- ..|..++.++-+ .+.+.|.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vp------------------------dfn~~yel 72 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVP------------------------DFNQMYEL 72 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTH------------------------CCHHHTTS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccch------------------------hhhccccc
Confidence 467 999999999999999999999999998753 566777777553 36677888
Q ss_pred CCccEEEEE
Q 008336 116 MGIPHLVIL 124 (569)
Q Consensus 116 ~~~P~~~li 124 (569)
. .|.++++
T Consensus 73 ~-dP~tvmF 80 (133)
T PF02966_consen 73 Y-DPCTVMF 80 (133)
T ss_dssp --SSEEEEE
T ss_pred C-CCeEEEE
Confidence 8 7776444
No 432
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=84.44 E-value=0.69 Score=32.09 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=28.2
Q ss_pred CeeeccCCCCCCCc---eeEEcCCCCCCccccccCCc
Q 008336 507 GVYSCDGCDEEGRV---WAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 507 ~~~~c~~C~~~g~~---~~~~~~~~~~~~~~~~~~~~ 540 (569)
++-.|+.|...-.+ .+|.|..|.+-+|++|+...
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 45678899887553 89999999999999999654
No 433
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.31 E-value=1.1 Score=42.24 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCEEEEEEecCCChhHHhhhHHH---HHHHHHHhhcCCCeEEEEEeC
Q 008336 356 AGKTILLYFSAHWCPPCRAFLPKL---IDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 356 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~vv~is~ 400 (569)
.|++.|+.|+...||+|..+.+.+ ..+.+.+.++ +.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEecc
Confidence 378889999999999999999866 6677777543 55554443
No 434
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=84.29 E-value=0.3 Score=31.54 Aligned_cols=18 Identities=28% Similarity=0.731 Sum_probs=12.3
Q ss_pred eEEcCCCCCCccccccCC
Q 008336 522 AFSCDECDFCLHPNCALG 539 (569)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~ 539 (569)
..+|..|+..+|..|-=.
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 578999999999999843
No 435
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=83.76 E-value=0.57 Score=32.26 Aligned_cols=30 Identities=47% Similarity=0.986 Sum_probs=26.1
Q ss_pred eccCCCCCCCceeEEcCCC-CCCccccccCC
Q 008336 510 SCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
.||+|+..-.+..|+|.+| ||||=..|...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 4999998888899999999 59998899853
No 436
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=83.39 E-value=2.5 Score=44.30 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=36.6
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
++.|..+|||+|++....|.+. | +..-.|+++.++.. .++.++.+- ..+....|.+++|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------g-i~~~~idi~~~~~~-~~~~~~~~~-----------~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------D-IPFTQISLDDDVKR-AEFYAEVNK-----------NILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------C-CCeEEEECCCChhH-HHHHHHHhh-----------ccccccCCCCccCe
Confidence 5678999999999876665542 3 55556677655432 122111100 01233467788998
Q ss_pred EEE
Q 008336 121 LVI 123 (569)
Q Consensus 121 ~~l 123 (569)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 866
No 437
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=83.23 E-value=0.57 Score=33.14 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=24.0
Q ss_pred CeeeccCCCCCC---CceeEEcCCCCCCcccc
Q 008336 507 GVYSCDGCDEEG---RVWAFSCDECDFCLHPN 535 (569)
Q Consensus 507 ~~~~c~~C~~~g---~~~~~~~~~~~~~~~~~ 535 (569)
-.|+|.+|..+- +.=+.+|.+|+|++--+
T Consensus 19 miYiCgdC~~en~lk~~D~irCReCG~RIlyK 50 (62)
T KOG3507|consen 19 MIYICGDCGQENTLKRGDVIRCRECGYRILYK 50 (62)
T ss_pred EEEEeccccccccccCCCcEehhhcchHHHHH
Confidence 369999998874 56899999999998644
No 438
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.95 E-value=12 Score=36.68 Aligned_cols=87 Identities=15% Similarity=0.268 Sum_probs=59.2
Q ss_pred cCCCCceecccCCCCEEEEEEecC----CChhHHhhhHHHHHHHHHHhhcC---CCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAH----WCPPCRAFLPKLIDAYKKIKERN---ESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~----wC~~C~~~~~~l~~l~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
+.+...+.....++=.+++.|.|. .|.-|..+..++.-+++.+.... .+-++.+..+|-+.
T Consensus 47 ~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e------------ 114 (331)
T KOG2603|consen 47 DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE------------ 114 (331)
T ss_pred CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc------------
Confidence 334445555555555677777765 49999999999999998887542 22345554444332
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCC-CcEE
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPS-GRTI 451 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~-G~i~ 451 (569)
..++-+.++++..|+++++.|. |++.
T Consensus 115 ---------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 ---------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred ---------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 2357889999999999999654 6655
No 439
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=82.24 E-value=0.77 Score=27.20 Aligned_cols=23 Identities=26% Similarity=0.584 Sum_probs=21.1
Q ss_pred eccCCCCCCCceeEEcCCCCCCc
Q 008336 510 SCDGCDEEGRVWAFSCDECDFCL 532 (569)
Q Consensus 510 ~c~~C~~~g~~~~~~~~~~~~~~ 532 (569)
.|+.|+.+-..-+-.|+.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48999999999999999999986
No 440
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=80.98 E-value=0.99 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=25.8
Q ss_pred eccCCCCCC-CceeEEcCCC-CCCccccccCCc
Q 008336 510 SCDGCDEEG-RVWAFSCDEC-DFCLHPNCALGE 540 (569)
Q Consensus 510 ~c~~C~~~g-~~~~~~~~~~-~~~~~~~~~~~~ 540 (569)
.||+|.... -+..|.|..| ||||=..|....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 599999865 7799999977 699999998543
No 441
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=80.37 E-value=3.5 Score=43.20 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=36.6
Q ss_pred EEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccE
Q 008336 361 LLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPM 440 (569)
Q Consensus 361 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt 440 (569)
|+.|..+|||+|.+....|.+. ++..-.|++|.++. ..++.++.. ...+.+..|.+.+|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~-~~~~~~~~~----------~~~~~~~~g~~tvP~ 63 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVK-RAEFYAEVN----------KNILLVEEHIRTVPQ 63 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChh-HHHHHHHHh----------hccccccCCCCccCe
Confidence 5678999999999988776542 24444556665432 122222111 001333467888999
Q ss_pred EEE
Q 008336 441 LVA 443 (569)
Q Consensus 441 ~~l 443 (569)
+++
T Consensus 64 ifi 66 (410)
T PRK12759 64 IFV 66 (410)
T ss_pred EEE
Confidence 865
No 442
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=79.67 E-value=1.8 Score=29.36 Aligned_cols=33 Identities=30% Similarity=0.616 Sum_probs=28.7
Q ss_pred CeeeccCCCCCCCceeEEcCCC-CCCccccccCC
Q 008336 507 GVYSCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 507 ~~~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
..+.|+.|...-.+-.|+|..| +|||=+.|...
T Consensus 3 ~~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 3 HSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 3578999999778889999999 89999999864
No 443
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=79.01 E-value=7.1 Score=32.53 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=36.2
Q ss_pred HHhhhHHHHHHHHHHh-hcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC----ccEEEEECC
Q 008336 372 CRAFLPKLIDAYKKIK-ERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG----IPMLVAIGP 446 (569)
Q Consensus 372 C~~~~~~l~~l~~~~~-~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~----~Pt~~lid~ 446 (569)
-......+.+++++++ ++ +.++.++.+... ...+.||+.. .|++.+++.
T Consensus 33 ~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~~-----------------------~~l~~fgl~~~~~~~P~~~i~~~ 86 (111)
T cd03073 33 TNYWRNRVLKVAKDFPDRK---LNFAVADKEDFS-----------------------HELEEFGLDFSGGEKPVVAIRTA 86 (111)
T ss_pred HHHHHHHHHHHHHHCcCCe---EEEEEEcHHHHH-----------------------HHHHHcCCCcccCCCCEEEEEeC
Confidence 4567788888999998 45 666665544221 2567889974 999999987
Q ss_pred CC
Q 008336 447 SG 448 (569)
Q Consensus 447 ~G 448 (569)
++
T Consensus 87 ~~ 88 (111)
T cd03073 87 KG 88 (111)
T ss_pred CC
Confidence 65
No 444
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=78.60 E-value=1.5 Score=31.40 Aligned_cols=24 Identities=25% Similarity=0.779 Sum_probs=15.4
Q ss_pred eeeccCCCCC---------CCceeEEcCCCCCC
Q 008336 508 VYSCDGCDEE---------GRVWAFSCDECDFC 531 (569)
Q Consensus 508 ~~~c~~C~~~---------g~~~~~~~~~~~~~ 531 (569)
.|.|+.|.++ -.+-.|.|++|+|.
T Consensus 25 ~F~CPnCG~~~I~RC~~CRk~~~~Y~CP~CGF~ 57 (59)
T PRK14890 25 KFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGFE 57 (59)
T ss_pred EeeCCCCCCeeEeechhHHhcCCceECCCCCCc
Confidence 4556555544 23357899999884
No 445
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.23 E-value=3.3 Score=45.13 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=64.8
Q ss_pred cCCCceeecCCCceeeec----------cccCcEEEEEEecCCcccchhhhHHH---HHHHHHHhcCCCceEEEEeeccc
Q 008336 176 SHSRDFVISSDGRKISVS----------DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDD 242 (569)
Q Consensus 176 ~~~~d~~~~~~~~~~~~~----------~~~gk~v~l~f~~~~~~~c~~~~~~~---~~~~~~~~~~~~~~ei~~v~~d~ 242 (569)
.+..+|+.....+.|.-+ ..++|+|+|-+...||-+|.-|..+. .++++-++.. +|-|.+|.
T Consensus 12 ~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~-----FV~IKVDR 86 (667)
T COG1331 12 NEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN-----FVPVKVDR 86 (667)
T ss_pred cCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC-----ceeeeECh
Confidence 344556654444444432 24789999999999999999887633 2466666544 56666676
Q ss_pred cHHHHHHHhcCCCcccccCCchhHHHHHhhcccC-CCceEEEECCCCCch
Q 008336 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLPTLVIIGPDGKTL 291 (569)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~-~~Ptlvi~~~~g~~~ 291 (569)
++. |..|.....+++...-+ +.|.-|++.|+|+..
T Consensus 87 EER--------------PDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 87 EER--------------PDVDSLYMNASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred hhc--------------cCHHHHHHHHHHHhccCCCCceeEEECCCCcee
Confidence 542 33344456667776665 699999999998765
No 446
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=78.04 E-value=27 Score=34.97 Aligned_cols=73 Identities=14% Similarity=0.261 Sum_probs=46.3
Q ss_pred CCEEEEEEecCCChh--HHhhh---HHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHH
Q 008336 357 GKTILLYFSAHWCPP--CRAFL---PKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSR 431 (569)
Q Consensus 357 gk~vll~F~a~wC~~--C~~~~---~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 431 (569)
-+.++|+|+.+--.. .+++. ..+-+|+.+..++ .++.+..|++..+. .+++
T Consensus 51 yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~gigfg~VD~~Kd~-----------------------klAK 106 (383)
T PF01216_consen 51 YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-KGIGFGMVDSKKDA-----------------------KLAK 106 (383)
T ss_dssp -SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-CTEEEEEEETTTTH-----------------------HHHH
T ss_pred hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-cCcceEEeccHHHH-----------------------HHHH
Confidence 357888888775332 22221 2233455554432 47888888887765 5999
Q ss_pred hcCCCCccEEEEECCCCcEEEcc
Q 008336 432 KFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 432 ~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
++|+...++++++ ++|+++.-+
T Consensus 107 KLgv~E~~SiyVf-kd~~~IEyd 128 (383)
T PF01216_consen 107 KLGVEEEGSIYVF-KDGEVIEYD 128 (383)
T ss_dssp HHT--STTEEEEE-ETTEEEEE-
T ss_pred hcCccccCcEEEE-ECCcEEEec
Confidence 9999999999999 888888764
No 447
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=77.51 E-value=2.4 Score=34.92 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCccEEEEECCCCcEEEc
Q 008336 427 ASLSRKFKVSGIPMLVAIGPSGRTITK 453 (569)
Q Consensus 427 ~~l~~~~~v~~~Pt~~lid~~G~i~~~ 453 (569)
..+.++|++...|+++++ ++|+.+..
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 468999999999999999 78888765
No 448
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=76.11 E-value=1.1 Score=32.07 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=16.1
Q ss_pred CeeeccCCCCC---------CCceeEEcCCCCCC
Q 008336 507 GVYSCDGCDEE---------GRVWAFSCDECDFC 531 (569)
Q Consensus 507 ~~~~c~~C~~~---------g~~~~~~~~~~~~~ 531 (569)
-.|.|+.|.++ -.+-.|.|++|+|.
T Consensus 26 v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 26 VKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGFE 59 (61)
T ss_pred eEeeCCCCCceeeehhhhHHHcCCceECCCcCcc
Confidence 34566666532 13457999999985
No 449
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=75.37 E-value=12 Score=32.84 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=19.6
Q ss_pred CCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHH
Q 008336 48 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84 (569)
Q Consensus 48 wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~ 84 (569)
+|++|.+....|.++ .+.+.-++++.+.+
T Consensus 15 t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~ 43 (147)
T cd03031 15 TFEDCNNVRAILESF--------RVKFDERDVSMDSG 43 (147)
T ss_pred cChhHHHHHHHHHHC--------CCcEEEEECCCCHH
Confidence 899998877666543 25666677765543
No 450
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=75.03 E-value=16 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=20.0
Q ss_pred EEecCCCHhhHhhHHHHHHHHHHhcCCC-CEEEEEEeCC
Q 008336 43 YFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD 80 (569)
Q Consensus 43 ~F~a~wC~~C~~~~p~l~~~~~~~~~~g-~~~vv~v~~d 80 (569)
.|+.+||++|++..-.|.+. | .++++.++..
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~ 34 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-------GITVELREVELK 34 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCC
Confidence 46789999998875444432 2 4666666554
No 451
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=74.91 E-value=23 Score=29.90 Aligned_cols=94 Identities=11% Similarity=0.207 Sum_probs=52.5
Q ss_pred cCcEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhccc
Q 008336 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (569)
Q Consensus 196 ~gk~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v 275 (569)
+-+.+++-|-... +..+-..++.+++.+.......+-+.-|.+.. +++..+..|++.|++
T Consensus 20 kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikD------------------YGek~N~~Laery~i 79 (126)
T PF07912_consen 20 KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKD------------------YGEKENMELAERYKI 79 (126)
T ss_dssp GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBS------------------SSS-CCHHHHHHTT-
T ss_pred cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCccc------------------ccchhHHHHHHHhCC
Confidence 3466777666553 34566777888885544444555555555432 233346899999999
Q ss_pred C--CCceEEEECCCCC-chhhhhHHHHHhhCCCCCCCChHHHHHHHH
Q 008336 276 S--TLPTLVIIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAE 319 (569)
Q Consensus 276 ~--~~Ptlvi~~~~g~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 319 (569)
. .+|.+.++..+.. .+.. ...-+++.+.+..+..
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~----------p~~~~~t~~~l~~fvk 116 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRY----------PFDGDVTADNLQRFVK 116 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-----------TCS-S-HHHHHHHHH
T ss_pred CcccCCEEEEecCCCCCCccC----------CccCCccHHHHHHHHH
Confidence 5 6999999974332 2211 0122678888887765
No 452
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=73.86 E-value=22 Score=30.94 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=69.8
Q ss_pred CceecccCCCCEEEEEEecCCChhHHhhhHHHHHHH-HHHh-hcCCCeEEEEEeCCCC--------hhHHHHHHhcCCCc
Q 008336 348 GKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAY-KKIK-ERNESLEVVFISSDRD--------QTSFDEFFKGMPWL 417 (569)
Q Consensus 348 ~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~-~~~~-~~~~~~~vv~is~d~~--------~~~~~~~~~~~~~~ 417 (569)
+....+++.||+-+|.--|-....=.+..+.++.+. .+|. +++. .--.|+.|+. +...+.-.+.+||.
T Consensus 50 ~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQ--TTTIiN~DDAi~GtgmFVkssae~~Kke~pwS 127 (184)
T COG3054 50 KTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQ--TTTIINTDDAIPGTGMFVKSSAESNKKEYPWS 127 (184)
T ss_pred cccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHce--eeEEeccCCccccccceeecchhhccccCCce
Confidence 455667788998888776654333222333333321 1222 1211 1223445532 23344445577887
Q ss_pred ccccCchhhHHHHHhcCCCCc-cEEEEECCCCcEEEccchhhHhhcCCCCCCCCHHHHHHHHHHhhhhh
Q 008336 418 ALPFGDARKASLSRKFKVSGI-PMLVAIGPSGRTITKEARDMIAVHGAEAYPFTEERMKEIDGQYNEMA 485 (569)
Q Consensus 418 ~~~~~~d~~~~l~~~~~v~~~-Pt~~lid~~G~i~~~~~~~~~~~~g~~~~p~~~~~~~~l~~~l~~l~ 485 (569)
.+-+. ..+.....++++.- -.++++|++|++....-+. .+.+++.+....+.+++
T Consensus 128 q~vlD--~~gvak~AWqL~e~~SaivVlDk~G~VkfvkeGa-----------Lt~aevQ~Vi~ll~~l~ 183 (184)
T COG3054 128 QFVLD--SNGVAKNAWQLKEESSAVVVLDKDGRVKFVKEGA-----------LTQAEVQQVIDLLQKLL 183 (184)
T ss_pred eeEEc--cchhhhhhhccccccceEEEEcCCCcEEEEecCC-----------ccHHHHHHHHHHHHHhc
Confidence 66553 33433337887754 4567789999998875433 67888888877777665
No 453
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=72.55 E-value=1.6 Score=29.14 Aligned_cols=30 Identities=27% Similarity=0.696 Sum_probs=25.2
Q ss_pred eeccCCCCCCCceeEEcCCC-CCCccccccCC
Q 008336 509 YSCDGCDEEGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 509 ~~c~~C~~~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
|.|++|...+ +-.|.|..| ||||=..|...
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHhCC
Confidence 5799998865 499999999 89998888754
No 454
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=71.59 E-value=2.9 Score=28.45 Aligned_cols=30 Identities=37% Similarity=0.743 Sum_probs=25.1
Q ss_pred eccCCCCC-CCceeEEcCCCC-CCccccccCC
Q 008336 510 SCDGCDEE-GRVWAFSCDECD-FCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~~-g~~~~~~~~~~~-~~~~~~~~~~ 539 (569)
.||+|... -.|-.|.|.+|. |||=..|...
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 59999964 466999999996 9999999853
No 455
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=70.83 E-value=35 Score=28.35 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=36.9
Q ss_pred HHhhhHHHHHHHHH---HhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCC--ccEEEEECC
Q 008336 372 CRAFLPKLIDAYKK---IKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSG--IPMLVAIGP 446 (569)
Q Consensus 372 C~~~~~~l~~l~~~---~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~--~Pt~~lid~ 446 (569)
-......+.+++++ ++++ +.+|.++.+... ...+.||++. .|.+.+++-
T Consensus 29 ~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~-----------------------~~~~~fgl~~~~~P~i~i~~~ 82 (111)
T cd03072 29 LESLKEFKQAVARQLISEKGA---INFLTADGDKFR-----------------------HPLLHLGKTPADLPVIAIDSF 82 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCce---EEEEEEechHhh-----------------------hHHHHcCCCHhHCCEEEEEcc
Confidence 45677788889999 7764 666666555332 2678899987 899999987
Q ss_pred CC
Q 008336 447 SG 448 (569)
Q Consensus 447 ~G 448 (569)
++
T Consensus 83 ~~ 84 (111)
T cd03072 83 RH 84 (111)
T ss_pred hh
Confidence 55
No 456
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=70.59 E-value=13 Score=27.71 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=35.9
Q ss_pred EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCccEEE
Q 008336 363 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIPMLV 442 (569)
Q Consensus 363 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~ 442 (569)
.|+.+||++|++..-.|.+. + -.++++.++..... .++.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----g--l~~e~~~v~~~~~~----------------------~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----G--ITVELREVELKNKP----------------------AEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----C--CCcEEEEeCCCCCC----------------------HHHHHHCCCCCCCEEE
Confidence 46789999999887665432 1 13666666553221 1344455567889884
Q ss_pred EECCCCcEEEc
Q 008336 443 AIGPSGRTITK 453 (569)
Q Consensus 443 lid~~G~i~~~ 453 (569)
. .+|..+..
T Consensus 54 ~--~~g~~l~e 62 (71)
T cd03060 54 L--GNGTVIEE 62 (71)
T ss_pred E--CCCcEEec
Confidence 3 45766554
No 457
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=70.46 E-value=1.5 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=23.9
Q ss_pred CeeeccCCCC-CCCceeEEcCCCC-CCccccccC
Q 008336 507 GVYSCDGCDE-EGRVWAFSCDECD-FCLHPNCAL 538 (569)
Q Consensus 507 ~~~~c~~C~~-~g~~~~~~~~~~~-~~~~~~~~~ 538 (569)
..+.|++|.. .-.+-.|+|..|. |||=..|..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~ 36 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS 36 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence 4689999998 4467899999997 999888874
No 458
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=69.35 E-value=1.9 Score=29.57 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.3
Q ss_pred cCeeeccCCCCCCCc--eeEEcCCCCCCccccccCCc
Q 008336 506 CGVYSCDGCDEEGRV--WAFSCDECDFCLHPNCALGE 540 (569)
Q Consensus 506 ~~~~~c~~C~~~g~~--~~~~~~~~~~~~~~~~~~~~ 540 (569)
.++-.|..|++.-.+ -+|.|..|.+-+|++|+...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 445679999887433 28999999999999999643
No 459
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=69.06 E-value=35 Score=27.91 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEee-ccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC-CCceEEEECCC--CCchh
Q 008336 217 PRLVEVYEKLKGKGESFEIVLIS-LDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLPTLVIIGPD--GKTLH 292 (569)
Q Consensus 217 ~~~~~~~~~~~~~~~~~ei~~v~-~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~-~~Ptlvi~~~~--g~~~~ 292 (569)
|.-.+.+.+.+.+|..-.++|.. .+.+ ....|.++.|+. ..|.+++++-. ++++.
T Consensus 39 piAd~~~aka~~k~~dap~~f~~a~ede---------------------~tdsLRDf~nL~d~~P~LviLDip~r~~~v~ 97 (116)
T cd03071 39 PIAEKIIAKYKAKEEEAPLLFFVAGEDD---------------------MTDSLRDYTNLPEAAPLLTILDMSARAKYVM 97 (116)
T ss_pred HHHHHHHHHhhccCCCcceeeeeeccch---------------------HHHHHHHhcCCCccCceEEEEeccccceEeC
Confidence 34445666677776555555543 3333 255677778887 58999999843 34443
Q ss_pred hhhHHHHHhhCCCCCCCChHHHHHHHHHH
Q 008336 293 SNVAEAIEEHGVGAFPFTPEKFAELAEIQ 321 (569)
Q Consensus 293 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (569)
.. + .+|++.+.+|...+
T Consensus 98 ~~--e----------eIT~e~~~~fv~~y 114 (116)
T cd03071 98 DV--E----------EITPAIVEAFVSDF 114 (116)
T ss_pred ch--H----------hcCHHHHHHHHHHh
Confidence 32 1 35888888887755
No 460
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=65.75 E-value=41 Score=31.20 Aligned_cols=85 Identities=20% Similarity=0.235 Sum_probs=61.9
Q ss_pred cee-cCCCCceecc---cCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCC
Q 008336 341 FVV-GKNGGKVPVS---DLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPW 416 (569)
Q Consensus 341 f~~-~~~g~~v~l~---~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 416 (569)
|+. -.+|+.+.-. +++.-.++|..|-+.-+-|..+...+.=|+..|+. +.++-|.....-
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~~g------------ 202 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSNTG------------ 202 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeecccc------------
Confidence 454 4455544221 22334788889999989999999999888888863 677777655442
Q ss_pred cccccCchhhHHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 417 LALPFGDARKASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 417 ~~~~~~~d~~~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
..++|...+.|++.++ ++|.+|...
T Consensus 203 ------------as~~F~~n~lP~LliY-kgGeLIgNF 227 (273)
T KOG3171|consen 203 ------------ASDRFSLNVLPTLLIY-KGGELIGNF 227 (273)
T ss_pred ------------chhhhcccCCceEEEe-eCCchhHHH
Confidence 5778999999999999 899988753
No 461
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=65.09 E-value=5.8 Score=22.97 Aligned_cols=13 Identities=31% Similarity=0.928 Sum_probs=9.4
Q ss_pred CCceeEEcCCCCC
Q 008336 518 GRVWAFSCDECDF 530 (569)
Q Consensus 518 g~~~~~~~~~~~~ 530 (569)
+.+=.|.|+.|+|
T Consensus 12 ~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 12 EQAVPFPCPNCGF 24 (24)
T ss_pred ccCceEeCCCCCC
Confidence 3456788888875
No 462
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=64.62 E-value=44 Score=34.33 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCccEEEEECCCCcEEEcc
Q 008336 427 ASLSRKFKVSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 427 ~~l~~~~~v~~~Pt~~lid~~G~i~~~~ 454 (569)
..++..|-+..+|.+|+|+..|+.+..-
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEEe
Confidence 4678889999999999999999998874
No 463
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=64.11 E-value=2.2 Score=26.69 Aligned_cols=25 Identities=28% Similarity=0.708 Sum_probs=14.7
Q ss_pred eeccCCCCCCCce---eEEcCCCCCCcc
Q 008336 509 YSCDGCDEEGRVW---AFSCDECDFCLH 533 (569)
Q Consensus 509 ~~c~~C~~~g~~~---~~~~~~~~~~~~ 533 (569)
|+|..|...-..- .=+|++|++++-
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RIl 28 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRIL 28 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SEE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeEE
Confidence 6677777654332 237888888763
No 464
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=63.97 E-value=6.1 Score=43.07 Aligned_cols=37 Identities=27% Similarity=0.607 Sum_probs=29.1
Q ss_pred eeecccCeeeccCCCCC---CCceeEEcCCCCCCcccccc
Q 008336 501 LVLDRCGVYSCDGCDEE---GRVWAFSCDECDFCLHPNCA 537 (569)
Q Consensus 501 l~~~~~~~~~c~~C~~~---g~~~~~~~~~~~~~~~~~~~ 537 (569)
+.....-..+||-|... -+.-+--|+.|++-+|..|.
T Consensus 264 lgie~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy 303 (893)
T KOG0954|consen 264 LGIEYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY 303 (893)
T ss_pred ceeeccccceeceecCCCccccceeEEeccchhHHHHhhh
Confidence 34445577899999887 24456779999999999998
No 465
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=63.42 E-value=16 Score=29.88 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=15.6
Q ss_pred EEEecCCCHhhHhhHHHHHH
Q 008336 42 LYFSASWCGPCQRFTPILAE 61 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~ 61 (569)
..|..++|+.|++....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45789999999987765554
No 466
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=62.21 E-value=5.7 Score=27.63 Aligned_cols=30 Identities=33% Similarity=0.742 Sum_probs=24.7
Q ss_pred eccCCCC-CCCceeEEcCCC-CCCccccccCC
Q 008336 510 SCDGCDE-EGRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
.|++|.. .-.+-.|.|.+| +|||=..|...
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 5899994 456789999999 79999999863
No 467
>PHA03075 glutaredoxin-like protein; Provisional
Probab=61.35 E-value=12 Score=31.00 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=23.9
Q ss_pred CEEEEEEecCCChhHHhhhHHHHHHHHHH
Q 008336 358 KTILLYFSAHWCPPCRAFLPKLIDAYKKI 386 (569)
Q Consensus 358 k~vll~F~a~wC~~C~~~~~~l~~l~~~~ 386 (569)
|.+++.|.-|.|+.|......|.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 57899999999999999888886655554
No 468
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=60.19 E-value=5.5 Score=33.20 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCC
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~ 81 (569)
..|..++|+.|++....|.+ +| +.+..+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~-i~~~~idi~~ 33 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HG-VDYTAIDIVE 33 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC-CceEEecccC
Confidence 35778999999987765554 23 5556666543
No 469
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=58.87 E-value=41 Score=25.56 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=46.0
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCccE
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (569)
|..|-+...+...+....+.++.+++. .+.+++=.|++...++ +++.+++.++||
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~------------------------lAe~~~ivAtPt 58 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQ------------------------LAEEDKIVATPT 58 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHh------------------------HHhhCCEEEech
Confidence 445666666889999999999998887 4567777777776654 888999999999
Q ss_pred EEEECC
Q 008336 121 LVILDE 126 (569)
Q Consensus 121 ~~lid~ 126 (569)
++-..+
T Consensus 59 Lvk~~P 64 (72)
T cd02978 59 LVKVLP 64 (72)
T ss_pred hhhcCC
Confidence 765533
No 470
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=57.96 E-value=24 Score=28.97 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=27.3
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCC---CCHHHHHHHHHhCC
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD---EDDEAFKGYFSKMP 94 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d---~~~~~~~~~~~~~~ 94 (569)
..|+.|+|+.|++....|.+. | +.+-.++.. -+.+.++.++++.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~-i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------G-VAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------C-CCeEEEecccCCCCHHHHHHHHHHhC
Confidence 457899999999876655543 3 444444443 24555555555443
No 472
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=20 Score=34.43 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=34.7
Q ss_pred cCCCCceecccCCCCEEEEEEecCCChhHHhhhHHHHHHHHHHhh
Q 008336 344 GKNGGKVPVSDLAGKTILLYFSAHWCPPCRAFLPKLIDAYKKIKE 388 (569)
Q Consensus 344 ~~~g~~v~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~ 388 (569)
..++..+.+.+..++++++.|...-||+|++..+.+.+.+.....
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 555555666565668999999999999999999998886555543
No 473
>PHA00626 hypothetical protein
Probab=57.02 E-value=8.1 Score=27.31 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=14.1
Q ss_pred CceeEEcCCCCCCccccc
Q 008336 519 RVWAFSCDECDFCLHPNC 536 (569)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~ 536 (569)
..-.|.|+.|+|.....-
T Consensus 20 ~snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 20 WSDDYVCCDCGYNDSKDA 37 (59)
T ss_pred cCcceEcCCCCCeechhh
Confidence 356899999999887653
No 474
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=39 Score=32.40 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=35.3
Q ss_pred ecCCCceeecCCCCCc-EEEEEecCCCHhhHhhHHHHHHHHHHhcC
Q 008336 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSR 68 (569)
Q Consensus 24 ~~~~g~~v~l~~~~gk-vlv~F~a~wC~~C~~~~p~l~~~~~~~~~ 68 (569)
+..++..+...+..++ +++.|.-..||+|++..|.+.+.+.....
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGK 115 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCC
Confidence 3456776777777778 99999999999999999999886655543
No 475
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=56.43 E-value=49 Score=26.90 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=41.4
Q ss_pred cEEEEEEecCCcccchhhhHHHHHHHHHHhcCCCceEEEEeeccccHHHHHHHhcCCCcccccCCchhHHHHHhhcccC-
Q 008336 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS- 276 (569)
Q Consensus 198 k~v~l~f~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ei~~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~f~v~- 276 (569)
+.|++.|+...-.. ......+.++++..++.|. +.++.+...+ .++||+.+.+.
T Consensus 20 ~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT---~~~vdCgd~e---------------------~kKLCKKlKv~~ 74 (112)
T cd03067 20 NNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGT---IAWIDCGDSE---------------------SRKLCKKLKVDP 74 (112)
T ss_pred CcEEEEEecchhhH-HHHHHHHHHHHHHhcCcee---EEEEecCChH---------------------HHHHHHHHccCC
Confidence 34555555543222 3334467788888888764 6666665433 67899999987
Q ss_pred ---CCceEEEECCCCCc
Q 008336 277 ---TLPTLVIIGPDGKT 290 (569)
Q Consensus 277 ---~~Ptlvi~~~~g~~ 290 (569)
.-|..+..-.+|..
T Consensus 75 ~~kp~~~~LkHYKdG~f 91 (112)
T cd03067 75 SSKPKPVELKHYKDGDF 91 (112)
T ss_pred CCCCCcchhhcccCCCc
Confidence 45544444356654
No 476
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.96 E-value=12 Score=33.92 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=43.7
Q ss_pred ecCCCceeecCCCCCc---EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeC
Q 008336 24 IRSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (569)
Q Consensus 24 ~~~~g~~v~l~~~~gk---vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~ 79 (569)
++..|+.|.+.++..+ |+...--+-|--|++....|..+..-+.+.| +.+++|--
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G-v~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG-VVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC-CEEEEEec
Confidence 4568999999998544 5555578999999999999999977777776 77777653
No 477
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=55.88 E-value=8.2 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.669 Sum_probs=25.5
Q ss_pred eccCCCCC-CCceeEEcCCC-CCCccccccCC
Q 008336 510 SCDGCDEE-GRVWAFSCDEC-DFCLHPNCALG 539 (569)
Q Consensus 510 ~c~~C~~~-g~~~~~~~~~~-~~~~~~~~~~~ 539 (569)
.||+|... -.+..|.|.+| ||||=..|...
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999975 57899999999 59999999864
No 478
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=54.09 E-value=16 Score=30.13 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=20.5
Q ss_pred HHHHHhcCCCCccEEEEECCCCcEEE
Q 008336 107 DKLDELFKVMGIPHLVILDENGKVLS 132 (569)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G~i~~ 132 (569)
..+..+||+...|+++++ ++|+.+.
T Consensus 72 ~~L~~r~gv~~~PaLvf~-R~g~~lG 96 (107)
T PF07449_consen 72 RALAARFGVRRWPALVFF-RDGRYLG 96 (107)
T ss_dssp HHHHHHHT-TSSSEEEEE-ETTEEEE
T ss_pred HHHHHHhCCccCCeEEEE-ECCEEEE
Confidence 479999999999999999 6786654
No 479
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=53.51 E-value=28 Score=29.13 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=23.8
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCH
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~ 83 (569)
..|+.++|+.|++....|.+ .| +.+..+++..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~-i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG-IEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC-CceEEEecCCCh
Confidence 35788999999988766655 23 666677766543
No 480
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=53.45 E-value=25 Score=29.25 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC
Q 008336 59 LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (569)
Q Consensus 59 l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (569)
|.+...++...| +.+|.|.+... +..++|++...++...+.|.+ ..+.+.++..
T Consensus 2 L~~~~~~l~~~g-v~lv~I~~g~~-~~~~~f~~~~~~p~~ly~D~~--~~lY~~lg~~ 55 (115)
T PF13911_consen 2 LSRRKPELEAAG-VKLVVIGCGSP-EGIEKFCELTGFPFPLYVDPE--RKLYKALGLK 55 (115)
T ss_pred hhHhHHHHHHcC-CeEEEEEcCCH-HHHHHHHhccCCCCcEEEeCc--HHHHHHhCCc
Confidence 344455665565 88999998854 338888877777666555554 3566777765
No 481
>PHA03075 glutaredoxin-like protein; Provisional
Probab=52.67 E-value=22 Score=29.50 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=23.4
Q ss_pred c-EEEEEecCCCHhhHhhHHHHHHHHHHh
Q 008336 39 K-IGLYFSASWCGPCQRFTPILAEVYNEL 66 (569)
Q Consensus 39 k-vlv~F~a~wC~~C~~~~p~l~~~~~~~ 66 (569)
| +||.|--|.|+.|......+.++.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 5 899999999999998888887666654
No 482
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=52.44 E-value=69 Score=26.07 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=45.7
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCC---
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--- 116 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--- 116 (569)
|||.|..+- ..-...+..+.+++++.+.. -.++.|+|.+... ..+|+.+.+.
T Consensus 22 VLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~--gT~~~vdCgd~e~----------------------kKLCKKlKv~~~~ 76 (112)
T cd03067 22 VLVLYSKSA-KSAEALLKLLSDVAQAVKGQ--GTIAWIDCGDSES----------------------RKLCKKLKVDPSS 76 (112)
T ss_pred EEEEEecch-hhHHHHHHHHHHHHHHhcCc--eeEEEEecCChHH----------------------HHHHHHHccCCCC
Confidence 777776553 34445677889999998755 4788888885433 5799999987
Q ss_pred -CccEEEEECCCCcEE
Q 008336 117 -GIPHLVILDENGKVL 131 (569)
Q Consensus 117 -~~P~~~lid~~G~i~ 131 (569)
--|..+.--++|...
T Consensus 77 kp~~~~LkHYKdG~fH 92 (112)
T cd03067 77 KPKPVELKHYKDGDFH 92 (112)
T ss_pred CCCcchhhcccCCCcc
Confidence 555544444666543
No 483
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.33 E-value=35 Score=32.28 Aligned_cols=29 Identities=14% Similarity=-0.175 Sum_probs=23.6
Q ss_pred EEEEEEecCCcccchhhhHHHHHHHHHHh
Q 008336 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLK 227 (569)
Q Consensus 199 ~v~l~f~~~~~~~c~~~~~~~~~~~~~~~ 227 (569)
.....|++.-||+|--..+.+.++...+.
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 34566899999999999999988877765
No 484
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=49.77 E-value=35 Score=29.32 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=27.5
Q ss_pred EEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC---HHHHHHHHHhC
Q 008336 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKM 93 (569)
Q Consensus 41 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~---~~~~~~~~~~~ 93 (569)
+..|..++|+.|++....|.+ .| +.+..+++..+ .+.+.++++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~g-i~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HD-IPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC-CCcEEeeccCChhhHHHHHHHHHHh
Confidence 345778999999987655543 33 55666665443 34455555544
No 485
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=49.47 E-value=66 Score=24.44 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=46.0
Q ss_pred EEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCCCcc
Q 008336 360 ILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVSGIP 439 (569)
Q Consensus 360 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~P 439 (569)
++..|-+...+-.++....+.++.+++.+. .+++=.|++-..+ ++++.++|-++|
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~~P-----------------------~lAe~~~ivAtP 57 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLKQP-----------------------QLAEEDKIVATP 57 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEcccCH-----------------------hHHhhCCEEEec
Confidence 455566666678888888998888887532 4677667776666 488999999999
Q ss_pred EEEEECC
Q 008336 440 MLVAIGP 446 (569)
Q Consensus 440 t~~lid~ 446 (569)
|++=..|
T Consensus 58 tLvk~~P 64 (72)
T cd02978 58 TLVKVLP 64 (72)
T ss_pred hhhhcCC
Confidence 9876544
No 486
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=49.44 E-value=1.7e+02 Score=25.37 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=40.5
Q ss_pred EEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCChhHHHHHHhcCCCcccccCchhhHHHHHhcCCC--
Q 008336 359 TILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQTSFDEFFKGMPWLALPFGDARKASLSRKFKVS-- 436 (569)
Q Consensus 359 ~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~-- 436 (569)
.-++.|+.|.|+=|..-+..| +.+ +|+|-.+..|+-. .+.++++|.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~m-------k~~--Gf~Vk~~~~~d~~-----------------------alK~~~gIp~e 73 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHM-------KAN--GFEVKVVETDDFL-----------------------ALKRRLGIPYE 73 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHH-------HhC--CcEEEEeecCcHH-----------------------HHHHhcCCChh
Confidence 345678899999998766544 333 5888777766432 366667764
Q ss_pred -CccEEEEECCCCcEEEcc
Q 008336 437 -GIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 437 -~~Pt~~lid~~G~i~~~~ 454 (569)
.-=.+.+| +|+.+.-|
T Consensus 74 ~~SCHT~VI--~Gy~vEGH 90 (149)
T COG3019 74 MQSCHTAVI--NGYYVEGH 90 (149)
T ss_pred hccccEEEE--cCEEEecc
Confidence 22356677 58887765
No 487
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=49.36 E-value=13 Score=31.01 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.0
Q ss_pred EEEecCCChhHHhhhHHHHH
Q 008336 362 LYFSAHWCPPCRAFLPKLID 381 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~ 381 (569)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778999999999877654
No 488
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=49.14 E-value=9.4 Score=21.70 Aligned_cols=10 Identities=20% Similarity=1.075 Sum_probs=6.7
Q ss_pred EEcCCCCCCc
Q 008336 523 FSCDECDFCL 532 (569)
Q Consensus 523 ~~~~~~~~~~ 532 (569)
|.|+.|+|.-
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 8999999864
No 489
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=49.02 E-value=43 Score=31.09 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=51.1
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCchhHHHHHHhcCCCCcc
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (569)
++|..|-+.-+.|-.+...+.=++.+|+ .+.++.|..... ....+|...++|
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~-------------------------gas~~F~~n~lP 213 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNT-------------------------GASDRFSLNVLP 213 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccc-------------------------cchhhhcccCCc
Confidence 7788999999999999999999999886 366666654422 355778999999
Q ss_pred EEEEECCCCcEEE
Q 008336 120 HLVILDENGKVLS 132 (569)
Q Consensus 120 ~~~lid~~G~i~~ 132 (569)
++.++ ++|+++.
T Consensus 214 ~LliY-kgGeLIg 225 (273)
T KOG3171|consen 214 TLLIY-KGGELIG 225 (273)
T ss_pred eEEEe-eCCchhH
Confidence 99988 8887764
No 490
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=48.86 E-value=8.6 Score=37.86 Aligned_cols=33 Identities=27% Similarity=0.668 Sum_probs=28.2
Q ss_pred eeeccCCCC-CCCceeEEcCCC-CCCccccccCCc
Q 008336 508 VYSCDGCDE-EGRVWAFSCDEC-DFCLHPNCALGE 540 (569)
Q Consensus 508 ~~~c~~C~~-~g~~~~~~~~~~-~~~~~~~~~~~~ 540 (569)
.-.||+|.. .--|.+|.|.+| ||||=..|-...
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 468999999 558899999999 699999997643
No 491
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.49 E-value=28 Score=31.67 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=42.0
Q ss_pred ecCCCCceecccCCC--CEEEEEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 343 VGKNGGKVPVSDLAG--KTILLYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 343 ~~~~g~~v~l~~~~g--k~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
++..|+.+++.+|-. +.|+....-+.|--|++....|.++..-+... ++..++|-.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~--Gv~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDEL--GVVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHh--CCEEEEEec
Confidence 577899999988743 35555555889999999999999985555544 577777753
No 492
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=48.24 E-value=41 Score=28.16 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=27.7
Q ss_pred EEEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCh---hHHHHHHhcC
Q 008336 362 LYFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISSDRDQ---TSFDEFFKGM 414 (569)
Q Consensus 362 l~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~---~~~~~~~~~~ 414 (569)
..|+.++|+.|++....|.+ . ++.+..+++..++ +++.++++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~--~i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------N--GIEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------c--CCceEEEecCCChhhHHHHHHHHHHc
Confidence 35778999999999877654 1 3556666665443 3444444433
No 493
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=47.99 E-value=25 Score=36.15 Aligned_cols=24 Identities=25% Similarity=0.682 Sum_probs=21.5
Q ss_pred cCeeeccCCCCCCCceeEEcCCCC
Q 008336 506 CGVYSCDGCDEEGRVWAFSCDECD 529 (569)
Q Consensus 506 ~~~~~c~~C~~~g~~~~~~~~~~~ 529 (569)
...+.|+-|...-.-|.+.|+.|.
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~ 375 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCK 375 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCC
Confidence 345899999999999999999996
No 494
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=47.61 E-value=57 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=27.3
Q ss_pred EEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCC---HHHHHHHHHhC
Q 008336 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKM 93 (569)
Q Consensus 42 v~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~---~~~~~~~~~~~ 93 (569)
..|+.++|+.|++....|.+ .| +.+..+++..+ .+.+.++++..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~g-i~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQ-IPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC-CceEEEecCCCcchHHHHHHHHHHh
Confidence 45678999999987665554 23 55666666543 44455555443
No 495
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=47.59 E-value=12 Score=25.30 Aligned_cols=26 Identities=27% Similarity=0.764 Sum_probs=19.2
Q ss_pred eeeccCCCCCCC---ceeEEcCCCCCCcc
Q 008336 508 VYSCDGCDEEGR---VWAFSCDECDFCLH 533 (569)
Q Consensus 508 ~~~c~~C~~~g~---~~~~~~~~~~~~~~ 533 (569)
.|.|..|...-. .-.-+|++|++.+-
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCceEE
Confidence 488888887643 34678999998774
No 496
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=47.03 E-value=33 Score=31.21 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=26.0
Q ss_pred EEecCCChhHHhhhHHHHHHHHHHhhcCCCeEEEEEeC
Q 008336 363 YFSAHWCPPCRAFLPKLIDAYKKIKERNESLEVVFISS 400 (569)
Q Consensus 363 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~ 400 (569)
.|..|.|++|-...|.|.++..++..+ +.+-.|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEc
Confidence 588999999999999999999999875 65555543
No 497
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=46.38 E-value=18 Score=37.72 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=38.9
Q ss_pred cCeeeccCCCCCCC---ceeEEcCCCCCCccccccCCcCCCCCCcccccCCCCCCceeecC
Q 008336 506 CGVYSCDGCDEEGR---VWAFSCDECDFCLHPNCALGEDKGTKDDKSEEQNPSKEGWRCDG 563 (569)
Q Consensus 506 ~~~~~c~~C~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (569)
++..+|.-|-.+-+ +---+|+.|++.+|--|-=+.++...- ....+-+.+-|.||.
T Consensus 117 kk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~--s~~s~~stepWfCea 175 (707)
T KOG0957|consen 117 KKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIP--SGSSDCSTEPWFCEA 175 (707)
T ss_pred ccceEEEEeecCccccccceeeccccCceecccccccccccccC--CCCccCCCCchhhhh
Confidence 45668988877753 356899999999999998555442221 223344668999985
No 498
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=45.76 E-value=8.9 Score=25.67 Aligned_cols=19 Identities=26% Similarity=1.078 Sum_probs=15.5
Q ss_pred eeeccCCCCCCCceeEEcCC
Q 008336 508 VYSCDGCDEEGRVWAFSCDE 527 (569)
Q Consensus 508 ~~~c~~C~~~g~~~~~~~~~ 527 (569)
.-.|--|...|| |.|.|+.
T Consensus 4 ~~~CqkC~~~GH-~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGH-WTYECPN 22 (42)
T ss_pred CCcCcccCCCCc-chhhCCC
Confidence 357888998886 7999996
No 499
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=29 Score=30.58 Aligned_cols=101 Identities=19% Similarity=0.383 Sum_probs=62.4
Q ss_pred ceecccC-CCCEEEEEEe--cCCChh-HHhhhHHHHHHHHHHhhcCCCe-EEEEEeCCCChhHHHHHHhcCCC-cccccC
Q 008336 349 KVPVSDL-AGKTILLYFS--AHWCPP-CRAFLPKLIDAYKKIKERNESL-EVVFISSDRDQTSFDEFFKGMPW-LALPFG 422 (569)
Q Consensus 349 ~v~l~~~-~gk~vll~F~--a~wC~~-C~~~~~~l~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~-~~~~~~ 422 (569)
+++++++ +||-++| |- +..-|. |+...|-+.+-+++++.+ ++ +|+.+++| ++-....|.+.++- -..-+.
T Consensus 34 tv~~~~l~~GKKvIi-fGvPgAFtPtCs~~HvPGyi~~a~elksK--GVd~iicvSVn-DpFv~~aW~k~~g~~~~V~f~ 109 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVIL-FGVPGAFTPTCSSSHVPGYIEKADELKSK--GVDEIICVSVN-DPFVMKAWAKSLGANDHVKFV 109 (171)
T ss_pred eEEhHHhcCCceEEE-EcCCCccCCccccccCchHHHHHHHHHhc--CCcEEEEEecC-cHHHHHHHHhhcCccceEEEE
Confidence 6667665 5754443 44 445566 677899999999999876 34 66777777 45666667666642 123444
Q ss_pred chhhHHHHHhcC-----------CCCccEEEEECCCCcEEEcc
Q 008336 423 DARKASLSRKFK-----------VSGIPMLVAIGPSGRTITKE 454 (569)
Q Consensus 423 ~d~~~~l~~~~~-----------v~~~Pt~~lid~~G~i~~~~ 454 (569)
.|...++.+.++ ++.-..-+++ .||++...+
T Consensus 110 aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 110 ADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred ecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 555555554443 3333445556 688887765
No 500
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=43.78 E-value=2.5e+02 Score=26.04 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=52.8
Q ss_pred EEEEEecCCCHhhHhhHHHHHHHHHHhcCCCCEEEEEEeCCCCHHHHHHHHHhCCCcccccCCch----hHHHHHHhcCC
Q 008336 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSE----TRDKLDELFKV 115 (569)
Q Consensus 40 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~g~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~v 115 (569)
.+..|--..|+.|...+..+.. ....+.|..|....+.+.++++..++++....+.... ....-...||+
T Consensus 111 rlalFvkd~C~~C~~~~~~l~a------~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~ 184 (200)
T TIGR03759 111 RLALFVKDDCVACDARVQRLLA------DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGL 184 (200)
T ss_pred eEEEEeCCCChHHHHHHHHHhc------CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccC
Confidence 5666777999999988776633 2225888888878888999999999886543322110 01124456775
Q ss_pred C-CccEEEEECCCC
Q 008336 116 M-GIPHLVILDENG 128 (569)
Q Consensus 116 ~-~~P~~~lid~~G 128 (569)
. .+|.++. ..+|
T Consensus 185 ~g~lP~~l~-q~~g 197 (200)
T TIGR03759 185 QGQLPAVVQ-QVNG 197 (200)
T ss_pred CCCCCEEEE-ecCC
Confidence 4 4676644 3444
Done!