Your job contains 1 sequence.
>008337
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVV
PAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQVQDELIIAREIVINDSESSVRYKLT
KRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA
MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMN
ETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGA
SRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTV
YSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSS
SPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPN
RSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNN
SLNKTKSDNIPVVSDTLVKLMEYGEDDDD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008337
(569 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2093792 - symbol:RIK "RS2-interacting KH prote... 1050 1.4e-114 2
UNIPROTKB|Q32SG5 - symbol:Q32SG5 "Protein RIK" species:45... 954 5.9e-96 1
MGI|MGI:1921450 - symbol:2810403A07Rik "RIKEN cDNA 281040... 204 3.4e-23 4
ASPGD|ASPL0000075827 - symbol:AN4431 species:162425 "Emer... 193 9.7e-12 2
POMBASE|SPAC30D11.14c - symbol:SPAC30D11.14c "RNA-binding... 151 1.9e-11 2
>TAIR|locus:2093792 [details] [associations]
symbol:RIK "RS2-interacting KH protein" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;TAS]
[GO:0008150 "biological_process" evidence=ND] [GO:0003723 "RNA
binding" evidence=TAS] InterPro:IPR004087 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AP001309 eggNOG:NOG304543 EMBL:AY940684
EMBL:AY065141 EMBL:AY081591 IPI:IPI00538701 IPI:IPI00866787
RefSeq:NP_566850.3 UniGene:At.21201 ProteinModelPortal:Q9LIA4
SMR:Q9LIA4 IntAct:Q9LIA4 STRING:Q9LIA4 EnsemblPlants:AT3G29390.1
GeneID:822600 KEGG:ath:AT3G29390 TAIR:At3g29390
HOGENOM:HOG000239854 InParanoid:Q9LIA4 OMA:YPQATPL PhylomeDB:Q9LIA4
ProtClustDB:CLSN2680882 Genevestigator:Q9LIA4 Uniprot:Q9LIA4
Length = 578
Score = 1050 (374.7 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 257/512 (50%), Positives = 312/512 (60%)
Query: 92 KFNQ--VQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPP 149
K NQ +QDE+IIAREIVIND+E+S+R++LTKR TQE+IQ+ TGAVVITRGKYR PNAPP
Sbjct: 76 KVNQPKIQDEVIIAREIVINDAEASLRHRLTKRSTQEDIQRSTGAVVITRGKYRPPNAPP 135
Query: 150 DGEKPLYLHISAGAHL--KETAERILAVDHAAAMVEEMLKQ---GHAGFPTLQTVMGNGV 204
DGEKPLYLHISA A L KET ERILAVD AAAM+EEM+KQ G LQTV
Sbjct: 136 DGEKPLYLHISAAAQLQLKETTERILAVDRAAAMIEEMMKQKSISQIGSVGLQTV----- 190
Query: 205 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEV 264
+ +ST V+LGF+AD S N+AARIRGPNDQYINHIMNETGATV+LRGRGSG+ E G+E
Sbjct: 191 KMLSTCVYLGFEADPSSNVAARIRGPNDQYINHIMNETGATVVLRGRGSGSLENQHGDEA 250
Query: 265 HQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQG 324
PLHL LS +NPKS+++AKRLAENL+DTIS E GASRVSS KVY AVPPPQQL++G G
Sbjct: 251 QLPLHLLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGAPG 310
Query: 325 FGNEQKLNAGSAVILTSTVNLSSVPLAPS---VPGVTTVYSQGMMLQSGGILNSVQPQQN 381
E + N S L +++ +++ P A S V T++Y Q ++QS GI N
Sbjct: 311 SDQENQ-NLISTYGLMTSIPITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNG------ 363
Query: 382 IVGYPQPVXXXXXXXXXXEGIYPQATPLQQVALALRQSSSPLXXXXXXXXXXXXXXXXXX 441
G QPV GIYPQATPLQQVA L+QS SP+
Sbjct: 364 --GPSQPVAGGTSYSGYA-GIYPQATPLQQVAQVLKQSISPVISTVPPTMLTATSLSIPS 420
Query: 442 XXXXXXEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSEL--SANL-----DVRNVS 494
E E+RPP+KRKFQELP K P K Q SE+ ++ SAN R+V
Sbjct: 421 DNASN-EMERRPPRKRKFQELPADCKVPEKDKQQSELAMTGDVTPSANRVRSPPSPRSVM 479
Query: 495 NMPPPSKLVQPVDNGMXXXXXXX---------XXXXXXXK--------FTLLAPTAKLHD 537
PPP + P M K FTL ++L D
Sbjct: 480 PPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQD 539
Query: 538 KNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD 569
N ++ K + +P DTL+KLMEYG+D+DD
Sbjct: 540 --NHISVKKPNPVP---DTLIKLMEYGDDEDD 566
Score = 100 (40.3 bits), Expect = 1.4e-114, Sum P(2) = 1.4e-114
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLI 40
MTED+ + +T+ +S+TRQR+KRKWD+PAE L+
Sbjct: 1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV 40
>UNIPROTKB|Q32SG5 [details] [associations]
symbol:Q32SG5 "Protein RIK" species:4577 "Zea mays"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR004087
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AY940679 RefSeq:NP_001105836.1 UniGene:Zm.14958
ProteinModelPortal:Q32SG5 IntAct:Q32SG5 GeneID:732737
KEGG:zma:732737 Gramene:Q32SG5 Uniprot:Q32SG5
Length = 616
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 242/533 (45%), Positives = 297/533 (55%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLIN----------FPLASFGI- 49
MTED H + D+ A S Q+ +RKKRKWDQPAE L++ P+ +FG
Sbjct: 1 MTEDRAHKVA-DEPAAS---GRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFGAL 56
Query: 50 -SLXXXXXXXXXXXXXXXXXXXXXXXXSGATXXXXXXXXXXXXKFNQ--VQDELIIAREI 106
+ K +Q + DE +IAREI
Sbjct: 57 PGVVLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAREI 115
Query: 107 VINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLK 166
VIND++ SVRYKLTKR TQEEIQKCT V+ITRGKY PN PDGEKPLYLHISAG+ LK
Sbjct: 116 VINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQLK 175
Query: 167 ETAERILAVDHAAAMVEEMLKQGHAGFPT---LQTVMGNGVQAMSTSVFLGFDADASLNI 223
+TAERI AVD AA+M+EE+LKQG + G V+ S SVFLGFDAD SLNI
Sbjct: 176 DTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSLNI 235
Query: 224 AARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEA 283
ARIRGPNDQYINHIM ETG TV+LRG+ S N E QPLHL+L+S + K+LE A
Sbjct: 236 TARIRGPNDQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLEAA 295
Query: 284 KRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLN--AGSAVILTS 341
K LAENLLDT++AE GASR+SS KVY AVPPPQQLL G+ G + ++ G V+ +
Sbjct: 296 KVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSGTKSDVHYIVGPNVLSGA 355
Query: 342 TVNLSSVP-LAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVXXXXXXXXXXE 400
T + +S +AP V TV QSG S P + + YP P
Sbjct: 356 THSFASTGVIAPVVAPAVTV-------QSGAPTYSGVPLPSNMAYPIPPANGGAFYSGYG 408
Query: 401 GIYPQATPLQQVALALRQSSSPLXXXXXXXXXXXXXXXXXXXXXXXXEKEKRPPQKRKFQ 460
IYPQATPLQQ+A L+ +SS E +KR +RKFQ
Sbjct: 409 DIYPQATPLQQLAFTLKHASSS-ATQAVPVTSTPTSMATKGNSILDAEMDKR--SRRKFQ 465
Query: 461 ELPVGSKGPAKHNQGSEIPNRSELSANLDVR-NV--SNMPPPSKLVQPVDNGM 510
ELPV SKGPA +Q S+ ++ + LD N+ S++ PP K V P NGM
Sbjct: 466 ELPV-SKGPATESQNSQQGSKF-VKTGLDSSGNIGSSSIAPPKK-VHPGSNGM 515
>MGI|MGI:1921450 [details] [associations]
symbol:2810403A07Rik "RIKEN cDNA 2810403A07 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] MGI:MGI:1921450
EMBL:AK173057 EMBL:AK012969 EMBL:AK020778 EMBL:AK038617
EMBL:AK083018 EMBL:AK164337 EMBL:AK170490 EMBL:BC006621
IPI:IPI00112125 IPI:IPI00473448 IPI:IPI00855074 IPI:IPI00855148
RefSeq:NP_083090.2 UniGene:Mm.251800 ProteinModelPortal:Q3TCX3
SMR:Q3TCX3 STRING:Q3TCX3 PhosphoSite:Q3TCX3 PRIDE:Q3TCX3
Ensembl:ENSMUST00000029696 GeneID:74200 KEGG:mmu:74200
UCSC:uc008pwe.2 UCSC:uc008pwf.2 UCSC:uc008pwg.2 eggNOG:NOG304543
GeneTree:ENSGT00510000047412 HOGENOM:HOG000067879
HOVERGEN:HBG099830 InParanoid:Q3TCX3 OMA:TGQSPMS OrthoDB:EOG4N30NT
NextBio:340086 Bgee:Q3TCX3 CleanEx:MM_2810403A07RIK
Genevestigator:Q3TCX3 Uniprot:Q3TCX3
Length = 612
Score = 204 (76.9 bits), Expect = 3.4e-23, Sum P(4) = 3.4e-23
Identities = 44/115 (38%), Positives = 68/115 (59%)
Query: 202 NGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 260
+G+ + +F+G + A + N+ ++ GP Y+ HI ETGA V LRG+GSG E
Sbjct: 228 SGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPAS 287
Query: 261 GEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 315
G E +P+++++S P+ L AK+L ENLL T+ AE SR + ++ AVP P
Sbjct: 288 GREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAEY--SRFVN-QINTAVPLP 339
Score = 133 (51.9 bits), Expect = 3.4e-23, Sum P(4) = 3.4e-23
Identities = 34/99 (34%), Positives = 55/99 (55%)
Query: 94 NQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD--- 150
N+ +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++
Sbjct: 98 NKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGP 156
Query: 151 GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG 189
G++PLYLH+ +T E VD A ++E++ G
Sbjct: 157 GDRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNG 187
Score = 44 (20.5 bits), Expect = 3.4e-23, Sum P(4) = 3.4e-23
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 28 KKRKWDQPAESLINF--PLASFG 48
++ KWDQPA + + F P A G
Sbjct: 14 RRSKWDQPAPAPLLFLPPTAPGG 36
Score = 40 (19.1 bits), Expect = 3.4e-23, Sum P(4) = 3.4e-23
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 309 YNAVPPPQQ 317
Y VPPPQQ
Sbjct: 366 YPVVPPPQQ 374
>ASPGD|ASPL0000075827 [details] [associations]
symbol:AN4431 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:BN001303
EnsemblFungi:CADANIAT00006023 HOGENOM:HOG000188522 OMA:QIKGRGS
Uniprot:C8V8Q8
Length = 466
Score = 193 (73.0 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 58/203 (28%), Positives = 97/203 (47%)
Query: 104 REIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKP-LYLHISAG 162
++I IND + RY LTK TQ+ I+ TGA V TRG Y + P LYLH+++
Sbjct: 123 KDIEINDLRN--RYTLTKGSTQKMIKDETGADVTTRGNYYPDKSMATAANPPLYLHVTST 180
Query: 163 AHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVF---------- 212
+ KE E+ A A++E+++K+ + + + F
Sbjct: 181 S--KEGLEK------AVALIEDLMKKELPNLVDERRFRRREPEQVERDEFGRRKWPEEKI 232
Query: 213 -LGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLF 271
+G + N+ A++ G Y+ HI +T V ++GRGSG E G E ++L
Sbjct: 233 PVGLEPIPGFNLRAQVVGQGGMYVKHIQQQTRCKVQIKGRGSGFLEPSTGRESDDAMYLH 292
Query: 272 LSSNNPKSLEEAKRLAENLLDTI 294
++ +P ++ AK L E+LL+ +
Sbjct: 293 VAGPDPNEVQRAKALCEDLLNNV 315
Score = 38 (18.4 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 309 YNAVPPPQQL 318
Y+AVPPP L
Sbjct: 457 YSAVPPPPGL 466
>POMBASE|SPAC30D11.14c [details] [associations]
symbol:SPAC30D11.14c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA
cis splicing, via spliceosome" evidence=NAS] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 SMART:SM00322 PomBase:SPAC30D11.14c
GO:GO:0005634 EMBL:CU329670 GO:GO:0003723 GO:GO:0045292
eggNOG:NOG304543 PIR:T38585 RefSeq:NP_593203.1
ProteinModelPortal:Q09911 EnsemblFungi:SPAC30D11.14c.1
GeneID:2542249 KEGG:spo:SPAC30D11.14c OMA:DIDINDQ OrthoDB:EOG4VDT7M
NextBio:20803314 Uniprot:Q09911
Length = 534
Score = 151 (58.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 43/169 (25%), Positives = 77/169 (45%)
Query: 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQ 266
+ V++ ++ I GP Y+ HI ET V ++G+GS E E +
Sbjct: 289 LEEKVYINLTPSRGFHLRQAIVGPQGAYVKHIQQETRTRVQIKGQGSAFIEPSTNRESDE 348
Query: 267 PLHLFLSSNNPKSLEEAKRLAENLLDTISAECGA--------SRVSSCKVYNAVPPPQQL 318
P+HL + S++P +++ AK L E+L+ ++ + A + + YN PP +
Sbjct: 349 PIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQPKDRDQNQGNRAYN--PPNRNQ 406
Query: 319 LTGIQGFGNE--QKLNAGSAVILTSTVNLSSVPLAPSV------PGVTT 359
+ E Q NA A ++T ++ + S+P P + PGVT+
Sbjct: 407 AFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTS 455
Score = 83 (34.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 96 VQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEK 153
++ + + +++ IN+ + RY L + T EI+ +G + ++G+Y PN D +
Sbjct: 160 IEGDGVFMQDVEINNVRN--RYILVRASTLSEIENKSGVQLFSKGRY-YPNKALATDKDP 216
Query: 154 PLYLHI 159
PLYLHI
Sbjct: 217 PLYLHI 222
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.129 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 569 485 0.00081 119 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 607 (65 KB)
Total size of DFA: 248 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.11u 0.21s 42.32t Elapsed: 00:00:02
Total cpu time: 42.11u 0.21s 42.32t Elapsed: 00:00:02
Start: Mon May 20 23:28:50 2013 End: Mon May 20 23:28:52 2013