BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008337
(569 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2
Length = 578
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 305/606 (50%), Positives = 384/606 (63%), Gaps = 87/606 (14%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
MTED+ + +T+ +S+TRQR+KRKWD+PAE L+ + G++ P + P+
Sbjct: 1 MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55
Query: 60 VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQ--VQDELIIAREIVINDSESSVRY 117
+ P+ + P+ +VP V PK NQ +QDE+IIAREIVIND+E+S+R+
Sbjct: 56 MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103
Query: 118 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHL--KETAERILAV 175
+LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A L KET ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163
Query: 176 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPND 232
D AAAM+EEM+KQ G LQTV + +ST V+LGF+AD S N+AARIRGPND
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPND 218
Query: 233 QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 292
QYINHIMNETGATV+LRGRGSG+ E G+E PLHL LS +NPKS+++AKRLAENL+D
Sbjct: 219 QYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMD 278
Query: 293 TISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAP 352
TIS E GASRVSS KVY AVPPPQQL++G G E + N S L +++ +++ P A
Sbjct: 279 TISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYAV 337
Query: 353 S---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPL 409
S V T++Y Q ++QS GI N G QPV+ GGTSYSGY GIYPQATPL
Sbjct: 338 SSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSGYAGIYPQATPL 388
Query: 410 QQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGP 469
QQVA L+QS SP+ S V PT +++T+ + + A +E E+RPP+KRKFQELP K P
Sbjct: 389 QQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNASNEMERRPPRKRKFQELPADCKVP 447
Query: 470 AKHNQGSEIPNRSEL--SANLDVRNV--------------------SNMPPPSKLVQPVD 507
K Q SE+ ++ SAN VR+ M PPS
Sbjct: 448 EKDKQQSELAMTGDVTPSAN-RVRSPPSPRSVMPPPPPKTIAPPPSKTMSPPS------S 500
Query: 508 NGMPHPPPRN--MPP-------PPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLV 558
M PPPR+ M P PPPP+FTL ++L D + S+ K V DTL+
Sbjct: 501 KSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQDNHISVKKPNP-----VPDTLI 555
Query: 559 KLMEYG 564
KLMEYG
Sbjct: 556 KLMEYG 561
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1
Length = 616
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 262/533 (49%), Positives = 325/533 (60%), Gaps = 41/533 (7%)
Query: 1 MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLI----------NFPLASFGIS 50
MTED H + + +A Q+ +RKKRKWDQPAE L+ P+ +FG +
Sbjct: 1 MTEDRAHKVADEPAA----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFG-A 55
Query: 51 LPGVPVAPVVPAPAAAAFFTNPPVASGA--TVPPVVLQ--GPLPPKFNQVQ--DELIIAR 104
LPGV V P V A AA + PV + P VLQ K +Q + DE +IAR
Sbjct: 56 LPGV-VLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDE-VIAR 113
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAH 164
EIVIND++ SVRYKLTKR TQEEIQKCT V+ITRGKY PN PDGEKPLYLHISAG+
Sbjct: 114 EIVINDADPSVRYKLTKRQTQEEIQKCTNTVIITRGKYHPPNLLPDGEKPLYLHISAGSQ 173
Query: 165 LKETAERILAVDHAAAMVEEMLKQGHAGFPT---LQTVMGNGVQAMSTSVFLGFDADASL 221
LK+TAERI AVD AA+M+EE+LKQG + G V+ S SVFLGFDAD SL
Sbjct: 174 LKDTAERIKAVDRAASMIEEILKQGTTSESISVPFSSSTGQAVRPFSASVFLGFDADPSL 233
Query: 222 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE 281
NI ARIRGPNDQYINHIM ETG TV+LRG+ S N E QPLHL+L+S + K+LE
Sbjct: 234 NITARIRGPNDQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLE 293
Query: 282 EAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLN--AGSAVIL 339
AK LAENLLDT++AE GASR+SS KVY AVPPPQQLL G+ G + ++ G V+
Sbjct: 294 AAKVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSGTKSDVHYIVGPNVLS 353
Query: 340 TSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGY 399
+T + +S + + V + + +QSG S P + + YP P + GG YSGY
Sbjct: 354 GATHSFASTGV------IAPVVAPAVTVQSGAPTYSGVPLPSNMAYPIPPANGGAFYSGY 407
Query: 400 EGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKF 459
IYPQATPLQQ+A L+ +SS T V P S ++ T S +E +KR +RKF
Sbjct: 408 GDIYPQATPLQQLAFTLKHASSSATQAV-PVTSTPTSMATKGNSILDAEMDKR--SRRKF 464
Query: 460 QELPVGSKGPAKHNQGSEIPNRSELSANLD--VRNVSNMPPPSKLVQPVDNGM 510
QELPV SKGPA +Q S+ ++ + LD S+ P K V P NGM
Sbjct: 465 QELPV-SKGPATESQNSQQGSKF-VKTGLDSSGNIGSSSIAPPKKVHPGSNGM 515
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1
Length = 570
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 49/239 (20%)
Query: 94 NQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYR--------LP 145
N+++D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++ LP
Sbjct: 73 NKLKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRVSGAAVSTRGRFMTVEEKSKALP 131
Query: 146 NAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMG---- 201
+ ++PLYLH+ + R L VD A ++E++ G T T G
Sbjct: 132 S-----DRPLYLHV-------QGQTRDL-VDKAVNRIKEIITNGVVKAATNSTYSGATVT 178
Query: 202 ----------------------NGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHI 238
G+ + VF+G D A N+ R+ GP+ ++ HI
Sbjct: 179 VYQQSGPSVPTIPSAPHKPHYPGGMHYVQDKVFVGLDQALQGFNVKERVEGPSCSFLQHI 238
Query: 239 MNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 297
ETGA V LRG+GSG E G E +P+++++S P+ L AK L ENLL T+ AE
Sbjct: 239 QAETGAKVFLRGKGSGCLEPASGREAFEPMYIYISHPKPEGLASAKTLCENLLQTVHAE 297
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1
Length = 585
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 41/239 (17%)
Query: 91 PKFNQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD 150
P + +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y
Sbjct: 98 PAAAKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAK 156
Query: 151 ---GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG------------------ 189
G++PLYLH+ +T E VD A ++E++ G
Sbjct: 157 IGPGDRPLYLHVQG-----QTRE---LVDRAVNRIKEIITSGVVKAATGSSPTFNGATVT 208
Query: 190 --HAGFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHI 238
H P V +G+ + +F+G + A A+ N+ ++ GP Y+ HI
Sbjct: 209 VYHQPAPVTPVVSAAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHI 268
Query: 239 MNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 297
ETGA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 269 QMETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 327
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9
PE=2 SV=1
Length = 619
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 41/239 (17%)
Query: 91 PKFNQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD 150
P N+ +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++
Sbjct: 103 PATNKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTAEEKAK 161
Query: 151 ---GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG------------------ 189
G++PLYLH+ +T E VD A ++E++ G
Sbjct: 162 VGPGDRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVT 213
Query: 190 --HAGFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHI 238
H P Q +G+ + +F+G + A + N+ ++ GP Y+ HI
Sbjct: 214 VYHQPAPITQMSPAVGQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHI 273
Query: 239 MNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 297
ETGA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 274 QIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 332
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1
Length = 612
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 38/236 (16%)
Query: 91 PKFNQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD 150
P + +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG+Y
Sbjct: 98 PSAAKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRMSGAAVSTRGRYMTAEEKAK 156
Query: 151 ---GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG-----HAGFPTLQTV--- 199
G++PLYLH+ +T E VD A ++E++ G PT
Sbjct: 157 IGPGDRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGSSPTFNGATVT 208
Query: 200 -----------------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNE 241
+G+ + +F+G + A A+ N+ ++ GP Y+ HI E
Sbjct: 209 VYHQPAPVAPVAPPKPQFQSGMHYVQDKLFVGLEHAVATFNVKEKVEGPGCSYLQHIQLE 268
Query: 242 TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 297
TGA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ +E
Sbjct: 269 TGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHSE 324
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1
Length = 614
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 41/236 (17%)
Query: 94 NQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD--- 150
N+ +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++
Sbjct: 96 NKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGP 154
Query: 151 GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------H 190
G++PLYLH+ +T E VD A ++E++ G H
Sbjct: 155 GDRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYH 206
Query: 191 AGFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNE 241
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI E
Sbjct: 207 QPAPIAQLSPAVSQKPPFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIE 266
Query: 242 TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 297
TGA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 267 TGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 322
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1
Length = 612
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 41/236 (17%)
Query: 94 NQVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPD--- 150
N+ +D+L++A E+ IND + R LT+ TQ+EI + +GA V TRG++
Sbjct: 98 NKSKDDLVVA-EVEINDVPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGP 156
Query: 151 GEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG--------------------H 190
G++PLYLH+ +T E VD A ++E++ G H
Sbjct: 157 GDRPLYLHVQG-----QTRE---LVDRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYH 208
Query: 191 AGFPTLQTV--------MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNE 241
P Q +G+ + +F+G + A + N+ ++ GP Y+ HI E
Sbjct: 209 QPAPIAQLSPAINQKPSFQSGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIE 268
Query: 242 TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 297
TGA V LRG+GSG E G E +P+++++S P+ L AK+L ENLL T+ AE
Sbjct: 269 TGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 324
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1
Length = 534
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 133/311 (42%), Gaps = 43/311 (13%)
Query: 89 LPPKFNQVQDELIIAREIVINDSESSV---RYKLTKRHTQEEIQKCTGAVVITRGKYRLP 145
+PP + ++I + + D E + RY L + T EI+ +G + ++G+Y P
Sbjct: 148 IPPSMADITSKVIEGDGVFMQDVEINNVRNRYILVRASTLSEIENKSGVQLFSKGRY-YP 206
Query: 146 NAP--PDGEKPLYLHISAGAH------LKETAERILA-----VDHAAAMVEEMLKQGHAG 192
N D + PLYLHI + L+E I +D E ++ ++
Sbjct: 207 NKALATDKDPPLYLHIVSHNRKDLTVALQEIESWINKDMGPLIDERRFRRREDNERNNSN 266
Query: 193 FPTLQTVMGNG--------VQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA 244
P + GNG + + V++ ++ I GP Y+ HI ET
Sbjct: 267 SPRNFSTHGNGNGENGQPRRKWLEEKVYINLTPSRGFHLRQAIVGPQGAYVKHIQQETRT 326
Query: 245 TVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRV- 303
V ++G+GS E E +P+HL + S++P +++ AK L E+L+ ++ + A +
Sbjct: 327 RVQIKGQGSAFIEPSTNRESDEPIHLCIMSHDPNAIQRAKVLCEDLIASVHQQYKAWKSQ 386
Query: 304 -------SSCKVYNAVPPPQQLLTGIQGFGNE--QKLNAGSAVILTSTVNLSSVPLAPSV 354
+ YN PP + + E Q NA A ++T ++ + S+P P +
Sbjct: 387 PKDRDQNQGNRAYN--PPNRNQAFSARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGM 444
Query: 355 ------PGVTT 359
PGVT+
Sbjct: 445 EAMAMPPGVTS 455
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 216 DADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGLQG----EEVHQP 267
D+ + N RI GP + + TG V +RG+GS G + L+G E + P
Sbjct: 143 DSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDP 202
Query: 268 LHLFLSSNNPKSLEEAK-RLAENLLDTI 294
LH+ + + P S+ +A+ R A+ +++ +
Sbjct: 203 LHILIEAEFPASIIDARLRHAQEVIEEL 230
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 45 ASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVP-----PVVLQGPLPPKFNQVQDE 99
A+ I G +AP V A A A VP +G F + ++E
Sbjct: 877 ATNAILRGGTILAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEE 936
Query: 100 LIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLH 158
L IND + R+K+T + + I + + A + RG Y P P +GE+ +YL
Sbjct: 937 L------EINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLA 990
Query: 159 ISAGAHLKETAERILAVDHAAAMVEEMLKQ 188
I + LAV A A + ++K+
Sbjct: 991 IESANE--------LAVQKAKAEITRLIKE 1012
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKY----RLPNAPPDGEKPLYLHIS 160
E+ IND + R+K+T + T I + TGA + TRG++ R+P GE+ LYL I
Sbjct: 1070 ELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPTGRIPGP---GERKLYLFIE 1126
Query: 161 -----AGAHLKETAERIL 173
+ H K +R+L
Sbjct: 1127 GPSEKSVKHAKAELKRVL 1144
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 163
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 164 HLKETAERILAVDHAAAMVEEMLKQ 188
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDG--EKPLYLHISA 161
E+ IND + R+K+T + T IQ+ TGA + TRG + P G E+ LYL I
Sbjct: 953 ELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTF-FPQGKIVGANERKLYLFIEG 1010
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 163
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 936 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 995
Query: 164 HLKETAERILAVDHAAAMVEEMLKQ 188
LAV A A + ++K+
Sbjct: 996 E--------LAVQKAKAEITRLIKE 1012
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 163
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 935 ELEINDFPQTARWKVTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 994
Query: 164 HLKETAERILAVDHAAAMVEEMLKQ 188
LAV A A + ++K+
Sbjct: 995 E--------LAVQKAKAEITRLIKE 1011
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 105 EIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NAPPDGEKPLYLHISAGA 163
E+ IND + R+K+T + + I + + A + RG Y P P +GE+ +YL I +
Sbjct: 922 ELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESAN 981
Query: 164 HLKETAERILAVDHAAAMVEEMLKQ 188
LAV A A + ++K+
Sbjct: 982 E--------LAVQKAKAEITRLIKE 998
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 148 PPDGEK-----PLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGN 202
P DG++ P Y + + +E R D +VE+ +K P
Sbjct: 120 PADGDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYRRPT 179
Query: 203 GVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS-----GNSE 257
Q V++ + +N + GP + + E+GA + +RG+GS G S+
Sbjct: 180 KTQ---EKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEGKGRSD 236
Query: 258 GLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISA 296
+ LH + ++ + + +AK+L N+++T ++
Sbjct: 237 AAHASNQEEDLHCLIMADTEEKVNKAKKLVHNVIETAAS 275
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 258
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 259 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 291
L GE+ +PLH +++N +++++A N+L
Sbjct: 196 LPGED--EPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 72 PPVASGATVPPVVLQGPLPPKFNQVQDELI---IAREIVINDSESSVRYKLTKRHTQEEI 128
PP V ++ + ++Q + I E+ IND + R+K+T + T I
Sbjct: 857 PPTDGAGRVAAMIAAANVQQYLAKIQADAIPEHYEAELEINDFPQNARWKVTHKETLGPI 916
Query: 129 QKCTGAVVITRGK-YRLPNAPPDGEKPLYLHI---------SAGAHLKETAERI 172
+ +GA + TRGK Y P E+ LYL + +A A LK E I
Sbjct: 917 SEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPTEISVKTAKAELKRVLEDI 970
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGS------GNSEG-- 258
+S V + D +N + GP + +I E A +++RG+GS G +G
Sbjct: 136 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQM 195
Query: 259 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 291
L GE+ +PLH +++N +++++A N+L
Sbjct: 196 LPGED--EPLHALVTANTMENVKKAVEQIRNIL 226
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 221 LNIAARIRGPNDQYINHIMNETGATVLLRGRGS-----GNSEGLQGEEVHQPLHLFLSSN 275
+N + GP + + E+GA + +RG+GS G S+ + LH + ++
Sbjct: 210 INFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGKGRSDAAHSSNQEEDLHCLIMAD 269
Query: 276 NPKSLEEAKRLAENLLDTISA 296
+ + +AK+L N+++T ++
Sbjct: 270 TEEKVNKAKKLIHNIIETAAS 290
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 221 LNIAARIRGPNDQYINHIMNETGATVLLRGRGS----GNSEGL----QGEEVHQPLHLFL 272
+N + GP + + ++GA + +RG+GS +S+G G ++ LH+ +
Sbjct: 162 INFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLI 221
Query: 273 SSNNPKSLEEAKRLAENLLDTI 294
++++P + +A +L ++D +
Sbjct: 222 TADSPLKISKAVKLVNEIIDKL 243
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 221 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 270
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 271 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 317
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 221 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGE----------EVHQPLHL 270
N +I GP I + ETGA + + G+GS + + E ++ LH+
Sbjct: 170 FNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHV 229
Query: 271 FLSSNNP---------KSLEEAKR-LAENLLDTISAECGASRVSSCKVYNAVPPPQQ 317
F+ P ++EE K+ L +++D I E + N VP P +
Sbjct: 230 FIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQE----QFLELSYLNGVPEPSR 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,189,821
Number of Sequences: 539616
Number of extensions: 10136715
Number of successful extensions: 57839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 671
Number of HSP's that attempted gapping in prelim test: 48418
Number of HSP's gapped (non-prelim): 7062
length of query: 569
length of database: 191,569,459
effective HSP length: 123
effective length of query: 446
effective length of database: 125,196,691
effective search space: 55837724186
effective search space used: 55837724186
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)