Query 008337
Match_columns 569
No_of_seqs 201 out of 477
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 23:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqr_A KIAA0907 protein; struc 100.0 2.5E-30 8.6E-35 231.0 8.9 103 201-303 6-109 (119)
2 2bl5_A MGC83862 protein, quaki 99.9 2.3E-27 7.8E-32 217.4 -0.1 103 207-309 2-117 (140)
3 1k1g_A SF1-BO isoform; splicin 99.9 4.9E-25 1.7E-29 199.2 5.7 99 205-303 5-112 (131)
4 3krm_A Insulin-like growth fac 99.4 4E-12 1.4E-16 114.9 12.1 147 115-298 14-161 (163)
5 2jvz_A KH type-splicing, FAR u 99.3 3.4E-11 1.2E-15 108.3 15.4 158 102-295 2-162 (164)
6 2jzx_A Poly(RC)-binding protei 99.2 9.8E-11 3.3E-15 105.5 10.0 152 102-292 5-158 (160)
7 1j4w_A FUSE binding protein; s 99.1 4.1E-10 1.4E-14 103.1 11.7 147 115-291 14-174 (174)
8 2anr_A Neuro-oncological ventr 99.1 3.5E-10 1.2E-14 103.7 9.7 159 102-292 6-174 (178)
9 2opv_A KHSRP protein; KH domai 98.9 3.7E-09 1.3E-13 87.8 7.5 71 207-292 14-84 (85)
10 1x4m_A FAR upstream element bi 98.7 1.4E-08 4.9E-13 86.0 5.5 73 205-292 13-85 (94)
11 1zzk_A Heterogeneous nuclear r 98.7 2E-08 7E-13 82.8 5.9 73 206-295 6-78 (82)
12 1x4n_A FAR upstream element bi 98.6 1.6E-08 5.5E-13 85.3 4.1 72 206-294 14-85 (92)
13 1dtj_A RNA-binding neurooncolo 98.6 3.7E-08 1.3E-12 79.5 5.6 71 208-292 4-74 (76)
14 2e3u_A PH-DIM2P, hypothetical 98.6 2.7E-08 9.1E-13 96.8 5.1 148 104-293 36-191 (219)
15 2hh3_A KH-type splicing regula 98.6 5.3E-08 1.8E-12 84.9 6.0 70 208-294 12-81 (106)
16 1j5k_A Heterogeneous nuclear r 98.6 2.8E-08 9.7E-13 83.2 3.7 74 206-296 13-86 (89)
17 2hh2_A KH-type splicing regula 98.6 5.7E-08 1.9E-12 84.3 5.5 72 208-293 8-79 (107)
18 2ctm_A Vigilin; K homology typ 98.6 6.7E-08 2.3E-12 82.6 5.7 77 206-300 16-92 (95)
19 2ctl_A Vigilin; K homology typ 98.5 1.3E-07 4.5E-12 80.9 6.8 77 206-298 16-92 (97)
20 2p2r_A Poly(RC)-binding protei 98.5 4.9E-08 1.7E-12 79.2 3.9 69 207-292 5-73 (76)
21 1ec6_A RNA-binding protein NOV 98.5 7.6E-08 2.6E-12 80.0 5.1 76 208-297 4-79 (87)
22 1we8_A Tudor and KH domain con 98.5 1E-07 3.4E-12 82.1 5.8 73 207-294 15-87 (104)
23 2cte_A Vigilin; K homology typ 98.5 6.6E-08 2.3E-12 82.0 4.6 71 207-296 17-87 (94)
24 1wvn_A Poly(RC)-binding protei 98.5 6.9E-08 2.4E-12 79.5 3.8 71 207-294 6-76 (82)
25 2ctk_A Vigilin; K homology typ 98.5 1E-07 3.5E-12 82.6 4.7 73 207-298 17-89 (104)
26 2dgr_A Ring finger and KH doma 98.4 1.4E-07 4.8E-12 79.1 4.3 66 206-291 9-74 (83)
27 1vig_A Vigilin; RNA-binding pr 98.4 2E-07 6.9E-12 75.3 4.5 66 207-291 5-70 (71)
28 2axy_A Poly(RC)-binding protei 98.4 2.1E-07 7.3E-12 75.4 3.8 67 207-292 5-71 (73)
29 1tua_A Hypothetical protein AP 98.3 5.1E-07 1.8E-11 86.5 5.1 144 105-293 7-160 (191)
30 2qnd_A FMR1 protein; KH domain 98.2 3.4E-06 1.2E-10 76.5 9.5 137 102-294 4-143 (144)
31 2jvz_A KH type-splicing, FAR u 98.0 6.5E-06 2.2E-10 73.9 6.6 70 209-293 4-73 (164)
32 2ctj_A Vigilin; K homology typ 98.0 3E-06 1E-10 72.7 3.9 70 206-294 16-86 (95)
33 1j4w_A FUSE binding protein; s 98.0 3.6E-06 1.2E-10 77.0 4.6 70 209-295 5-74 (174)
34 2cpq_A FragIle X mental retard 97.8 5.3E-06 1.8E-10 71.4 1.6 64 207-291 15-79 (91)
35 2jzx_A Poly(RC)-binding protei 97.7 1.7E-05 6E-10 71.2 3.8 68 207-293 5-72 (160)
36 3krm_A Insulin-like growth fac 97.7 3.1E-05 1.1E-09 69.8 5.3 69 209-293 5-73 (163)
37 2anr_A Neuro-oncological ventr 97.7 2.7E-05 9.3E-10 71.2 4.2 72 207-292 6-77 (178)
38 2yqr_A KIAA0907 protein; struc 97.6 0.00011 3.7E-09 65.8 7.7 79 102-188 12-99 (119)
39 1k1g_A SF1-BO isoform; splicin 97.6 0.00015 5E-09 65.7 7.3 80 102-189 7-100 (131)
40 3u1k_A Polyribonucleotide nucl 97.3 0.00012 4E-09 80.9 3.7 62 209-292 569-630 (630)
41 2ctf_A Vigilin; K homology typ 97.1 0.0009 3.1E-08 57.9 6.7 71 207-299 27-98 (102)
42 4aid_A Polyribonucleotide nucl 96.8 0.00085 2.9E-08 75.3 4.8 91 223-345 580-670 (726)
43 2bl5_A MGC83862 protein, quaki 96.6 0.0036 1.2E-07 57.5 6.7 65 121-188 26-101 (140)
44 3n89_A Defective in GERM LINE 96.6 0.0033 1.1E-07 65.9 7.2 72 207-291 186-259 (376)
45 2e3u_A PH-DIM2P, hypothetical 96.5 0.0017 5.8E-08 63.2 4.0 62 209-291 36-101 (219)
46 3n89_A Defective in GERM LINE 96.2 0.0021 7.3E-08 67.3 3.2 76 204-291 27-104 (376)
47 2qnd_A FMR1 protein; KH domain 95.9 0.0033 1.1E-07 56.9 2.7 61 207-287 4-64 (144)
48 2opv_A KHSRP protein; KH domai 95.6 0.078 2.7E-06 43.6 9.6 70 102-188 14-85 (85)
49 1zzk_A Heterogeneous nuclear r 95.3 0.088 3E-06 43.0 9.0 70 102-189 7-77 (82)
50 1dtj_A RNA-binding neurooncolo 95.0 0.076 2.6E-06 42.4 7.4 71 103-188 4-75 (76)
51 2p2r_A Poly(RC)-binding protei 94.7 0.064 2.2E-06 43.1 6.3 70 102-189 5-75 (76)
52 1wvn_A Poly(RC)-binding protei 94.6 0.086 2.9E-06 43.0 6.9 70 102-189 6-76 (82)
53 1x4n_A FAR upstream element bi 94.4 0.064 2.2E-06 44.9 5.8 71 102-190 15-86 (92)
54 1x4m_A FAR upstream element bi 94.3 0.077 2.6E-06 44.6 6.2 73 101-189 14-87 (94)
55 2hh2_A KH-type splicing regula 94.1 0.078 2.7E-06 45.7 5.9 73 104-191 9-82 (107)
56 1we8_A Tudor and KH domain con 94.1 0.19 6.3E-06 43.0 8.2 76 98-189 11-87 (104)
57 1j5k_A Heterogeneous nuclear r 94.1 0.1 3.5E-06 43.4 6.3 71 101-189 13-84 (89)
58 2hh3_A KH-type splicing regula 94.0 0.13 4.5E-06 44.6 7.3 69 104-190 13-82 (106)
59 2dgr_A Ring finger and KH doma 94.0 0.13 4.5E-06 42.8 6.9 67 102-189 10-77 (83)
60 2cte_A Vigilin; K homology typ 93.9 0.15 5.3E-06 42.8 7.3 68 102-189 17-85 (94)
61 1vig_A Vigilin; RNA-binding pr 93.9 0.13 4.6E-06 41.1 6.5 65 102-186 5-70 (71)
62 2axy_A Poly(RC)-binding protei 93.8 0.14 4.7E-06 41.2 6.4 68 102-189 5-73 (73)
63 2ctk_A Vigilin; K homology typ 93.2 0.29 9.9E-06 42.2 7.9 68 101-188 16-84 (104)
64 1e3p_A Guanosine pentaphosphat 93.1 0.022 7.4E-07 64.3 1.0 93 223-345 608-700 (757)
65 3v69_A Protein filia; RNA-bind 93.1 0.082 2.8E-06 48.9 4.6 66 221-298 64-129 (140)
66 1ec6_A RNA-binding protein NOV 93.0 0.2 6.7E-06 41.3 6.3 70 105-189 6-76 (87)
67 3cdi_A Polynucleotide phosphor 92.3 0.038 1.3E-06 62.1 1.4 54 223-292 570-623 (723)
68 2ctm_A Vigilin; K homology typ 91.5 0.45 1.5E-05 40.3 6.9 68 102-188 17-85 (95)
69 2ctl_A Vigilin; K homology typ 91.2 0.7 2.4E-05 39.2 7.8 70 102-188 17-87 (97)
70 1tua_A Hypothetical protein AP 89.1 0.38 1.3E-05 46.0 4.9 67 208-295 5-75 (191)
71 2ctj_A Vigilin; K homology typ 88.9 0.53 1.8E-05 40.1 5.2 68 102-189 17-86 (95)
72 2ctf_A Vigilin; K homology typ 78.4 5.9 0.0002 34.0 7.2 64 102-188 27-92 (102)
73 4fxw_B Splicing factor 1; UHM, 75.5 1.7 5.7E-05 39.5 3.0 52 147-198 70-121 (124)
74 2cpq_A FragIle X mental retard 67.8 2.2 7.4E-05 36.6 1.8 62 102-185 15-78 (91)
75 3u1k_A Polyribonucleotide nucl 46.3 8.5 0.00029 42.8 2.4 62 103-187 568-630 (630)
76 2z0s_A Probable exosome comple 38.4 26 0.00089 33.8 4.2 47 223-285 158-204 (235)
77 2cxc_A NUSA; transcription ter 31.2 9.9 0.00034 34.9 -0.1 28 224-251 47-74 (144)
78 1wjw_A Phosphoacetylglucosamin 30.2 1.7E+02 0.0057 25.2 7.5 50 233-297 45-96 (112)
79 2ba0_A Archeal exosome RNA bin 26.5 30 0.001 33.4 2.4 40 222-277 145-184 (229)
80 4hhu_A OR280; engineered prote 25.9 1.2E+02 0.0041 27.8 6.0 36 236-283 63-100 (170)
81 3ldc_A Calcium-gated potassium 23.9 41 0.0014 27.1 2.4 15 397-412 43-57 (82)
82 2qn6_B Translation initiation 23.9 88 0.003 26.6 4.5 33 152-188 50-83 (93)
83 3iev_A GTP-binding protein ERA 21.6 20 0.00067 35.1 0.0 39 206-249 239-285 (308)
No 1
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=2.5e-30 Score=231.02 Aligned_cols=103 Identities=37% Similarity=0.671 Sum_probs=99.1
Q ss_pred CCCcccceeEEEecCC-CCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q 008337 201 GNGVQAMSTSVFLGFD-ADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKS 279 (569)
Q Consensus 201 ~~G~k~~qeKI~Ipld-~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~ 279 (569)
..|++|+++|||||++ +||+|||+|+||||+|+|+|+|++||||||.||||||+++|+.+++|++|||||+|++.+.++
T Consensus 6 ~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~ 85 (119)
T 2yqr_A 6 SGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEG 85 (119)
T ss_dssp CSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHH
T ss_pred CCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHH
Confidence 3577999999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 008337 280 LEEAKRLAENLLDTISAECGASRV 303 (569)
Q Consensus 280 v~~Ak~LiEnLL~tV~eE~~~fr~ 303 (569)
+++|++||++||.+++++|+.|+-
T Consensus 86 i~~A~~~Ie~Ll~~v~~~~~~~~~ 109 (119)
T 2yqr_A 86 LAAAKKLCENLLQTVHAEYSRFVN 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999999999999953
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.92 E-value=2.3e-27 Score=217.45 Aligned_cols=103 Identities=19% Similarity=0.369 Sum_probs=88.2
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCC----CCCC----CCCCCCcEEEEEeCCHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSE----GLQG----EEVHQPLHLFLSSNNPK 278 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E----~~~g----~EsdEPLHV~Isa~~~e 278 (569)
+++|||||++.||+|||+|+||||+|+|+|+||+||||||+||||||++.+ ...+ ++.+|||||+|++.+++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 579999999999999999999999999999999999999999999999742 1112 36899999999999886
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhccccccccccc
Q 008337 279 -----SLEEAKRLAENLLDTISAECGASRVSSCKVY 309 (569)
Q Consensus 279 -----~v~~Ak~LiEnLL~tV~eE~~~fr~~~~k~y 309 (569)
.|++|+++|++||.++.+.++.++-......
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eL 117 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMEL 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGG
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHH
Confidence 8999999999999998887777764333333
No 3
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.90 E-value=4.9e-25 Score=199.23 Aligned_cols=99 Identities=21% Similarity=0.352 Sum_probs=85.9
Q ss_pred ccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCC------CCCCCCCCCcEEEEEeCCHH
Q 008337 205 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG------LQGEEVHQPLHLFLSSNNPK 278 (569)
Q Consensus 205 k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~------~~g~EsdEPLHV~Isa~~~e 278 (569)
..+++|||||++.||+|||+|+||||+|+|+|+||+||||||.||||||++.+. ...++.+|||||+|++.+.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999999999999999999999999999999999999999999998532 22346789999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHhhccccc
Q 008337 279 SLEEAKRLAENLLDT---ISAECGASRV 303 (569)
Q Consensus 279 ~v~~Ak~LiEnLL~t---V~eE~~~fr~ 303 (569)
.+++|+++|++||.. +-+.++.++.
T Consensus 85 ~~~~A~~~I~~ll~~~~~~p~~~d~~k~ 112 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGIETPEDQNDLRK 112 (131)
T ss_dssp HHHHHHHHHHHHHTTTTSCCTTSSGGGG
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHH
Confidence 999999999999976 4344555543
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.36 E-value=4e-12 Score=114.92 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=108.5
Q ss_pred cchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 008337 115 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGF 193 (569)
Q Consensus 115 ~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alIeEIIKE~p~~~ 193 (569)
++..+.+ |+++.+|++.|||.|..--.-+ ++..--.+.|.|.. ..+.+|..+|.+++.+...+.
T Consensus 14 ~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~------~~~~~r~v~I~G~~---------e~v~~A~~~I~~~~~e~~~~~ 78 (163)
T 3krm_A 14 VGAIIGKKGQHIKQLSRFASASIKIAPPET------PDSKVRMVIITGPP---------EAQFKAQGRIYGKLKEENFFG 78 (163)
T ss_dssp HHHHHCGGGHHHHHHHHHHTCEEEECCCSS------TTCSEEEEEEEECH---------HHHHHHHHHHHHHHHHTTSSC
T ss_pred cceeECCCcHHHHHHHHHHCCeEEEcCCCC------CCCCceEEEEEcCH---------HHHHHHHHHHHHHHhcccccc
Confidence 6788886 9999999999999987632111 22333456889953 478889999999998763322
Q ss_pred CCccccCCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEE
Q 008337 194 PTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS 273 (569)
Q Consensus 194 pp~~~p~~~G~k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Is 273 (569)
+.. ......++.||- +++|+|||++|.++|+|+++|||+|.|-..|.- ..++.-.|.|+
T Consensus 79 ~~~-------~~~~~~~i~vp~------~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--------~~~~~~~v~I~ 137 (163)
T 3krm_A 79 PKE-------EVKLETHIRVPA------SAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--------DENDQVIVKII 137 (163)
T ss_dssp SSC-------CCCEEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--------CTTSEEEEEEE
T ss_pred ccc-------CCceEEEEEcCh------hheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--------CCCCceEEEEE
Confidence 111 112345777873 489999999999999999999999999755331 12334478899
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHHhh
Q 008337 274 SNNPKSLEEAKRLAENLLDTISAEC 298 (569)
Q Consensus 274 a~~~e~v~~Ak~LiEnLL~tV~eE~ 298 (569)
| +.+++++|+++|++||+.+++..
T Consensus 138 G-~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 138 G-HFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp E-CHHHHHHHHHHHHHHHHHHTC--
T ss_pred e-CHHHHHHHHHHHHHHHHHHHHhh
Confidence 9 89999999999999999887765
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.32 E-value=3.4e-11 Score=108.26 Aligned_cols=158 Identities=19% Similarity=0.279 Sum_probs=111.0
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..-- ++..+.+ |+++++|++.|||.|..-- .....+..--.+.|.|.. ..|++|+.
T Consensus 2 ~~~~~~Vp~~~--~g~iIGk~G~~Ik~i~~~tg~~I~i~~-----~~~~~~~~~r~v~I~G~~---------~~v~~A~~ 65 (164)
T 2jvz_A 2 TVQEIMIPAGK--AGLVIGKGGETIKQLQERAGVKMILIQ-----DGSQNTNVDKPLRIIGDP---------YKVQQACE 65 (164)
T ss_dssp EEEEEEECTTC--HHHHTCTTTHHHHHHHHTSCSEEEECC-----CTTSSSSSCEEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEechhh--eeEEECCChHHHHHHHHHhCCeEEEec-----CCCCCCCCceEEEEEcCH---------HHHHHHHH
Confidence 34567776544 7888886 9999999999999986521 111112222356788953 47999999
Q ss_pred HHHHHHHcCCCC-CCCccccCCCCcc-cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCC
Q 008337 181 MVEEMLKQGHAG-FPTLQTVMGNGVQ-AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEG 258 (569)
Q Consensus 181 lIeEIIKE~p~~-~pp~~~p~~~G~k-~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~ 258 (569)
+|.+++.+.... ..+ ...++.. ....++.||- +++|+|||++|.++|+|+++|||+|.|-....
T Consensus 66 ~I~~ii~e~~~~~~~~---~~~~~~~~~~~~~i~vp~------~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~----- 131 (164)
T 2jvz_A 66 MVMDILRERDQGGFGD---RNEYGSRIGGGIDVPVPR------HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG----- 131 (164)
T ss_dssp HHHHHTTCSSSCCCSS---CSSCTTSCSSSBCCEEET------TTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----
T ss_pred HHHHHHHhccCCCCCC---ccccCCCCCceEEEEECh------hhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----
Confidence 999999876421 111 1123321 2345666763 38999999999999999999999999975421
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 008337 259 LQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS 295 (569)
Q Consensus 259 ~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~tV~ 295 (569)
....-.|.|+|. ++++++|++++++||+.+.
T Consensus 132 -----~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 132 -----TGPEKIAHIMGP-PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp -----TSSEEEEEEESC-HHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEEcC-HHHHHHHHHHHHHHHhhhh
Confidence 112357888886 9999999999999998764
No 6
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=9.8e-11 Score=105.51 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=108.0
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..- .++..+.+ |.++.+|+++|||.|.+... +..--.+.|.|.. ..|++|+.
T Consensus 5 ~~~~~~vp~~--~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~---------~~~~r~v~I~G~~---------~~v~~A~~ 64 (160)
T 2jzx_A 5 LTIRLLMHGK--EVGSIIGKKGESVKKMREESGARINISEG---------NCPERIITLAGPT---------NAIFKAFA 64 (160)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCSEEEEECC---------TTTEEEEEEEEEH---------HHHHHHHH
T ss_pred EEEEEEEchh--heeeeECCCcHHHHHHHHHHCCEEEEcCC---------CCCceEEEEEeCH---------HHHHHHHH
Confidence 4556666543 36778876 89999999999999977431 1222456799973 47889999
Q ss_pred HHHHHHHcCCC-CCCCccccCCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCC
Q 008337 181 MVEEMLKQGHA-GFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGL 259 (569)
Q Consensus 181 lIeEIIKE~p~-~~pp~~~p~~~G~k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~ 259 (569)
+|.+++.+... ..+. .. .........++.||- +++|+|||++|.++|+|+++|||+|.|.+.. .
T Consensus 65 ~I~~~i~e~~~~~~~~-~~--~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~------~ 129 (160)
T 2jzx_A 65 MIIDKLEEDISSSMTN-ST--AASRPPVTLRLVVPA------SQCGSLIGKGGCKIKEIRESTGAQVQVAGDM------L 129 (160)
T ss_dssp HHHHHHHHHHTSCCCS-SS--CCCCCSEEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHSSEECCCCCC------S
T ss_pred HHHHHHHhhccccCCC-Cc--cCCCCCEEEEEEECh------hheeeEECCCCHHHHHHHHHhCCeEEECCCC------C
Confidence 99988877522 1110 00 001123567778873 4899999999999999999999999997531 1
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008337 260 QGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 292 (569)
Q Consensus 260 ~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~ 292 (569)
.....=.|.|+| +++++++|+++++++|.
T Consensus 130 ---~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 130 ---PNSTERAITIAG-IPQSIIECVKQICVVML 158 (160)
T ss_dssp ---TTCCEEEEEEEE-CHHHHHHHHHHHHHHHH
T ss_pred ---CCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Confidence 112335688889 89999999999999875
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.11 E-value=4.1e-10 Score=103.15 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=99.2
Q ss_pred cchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHcCCC-C
Q 008337 115 VRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHA-G 192 (569)
Q Consensus 115 ~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alIeEIIKE~p~-~ 192 (569)
+...+.| |+++++|+++|||.|.+... .....+ -.+.|.|.. +.|++|+.+|.+++.+... .
T Consensus 14 vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~~~--r~v~I~G~~---------~~v~~A~~~I~~~~~~~~~~~ 77 (174)
T 1j4w_A 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTTPE--RIAQITGPP---------DRAQHAAEIITDLLRSVQAGN 77 (174)
T ss_dssp HHHHHCGGGHHHHHHHHHHCCEEEEECC-----TTSCSE--EEEEEEECH---------HHHHHHHHHHHHHHHHHC---
T ss_pred eeeeecCCchHHHHHHHHhCCEEEEecC-----CCCCCc--cEEEEEeCH---------HHHHHHHHHHHHHHHhcccCC
Confidence 6677776 99999999999999987431 111223 355788873 4799999999999976421 1
Q ss_pred CCCcc-----cc---CCC--Cc--ccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCC
Q 008337 193 FPTLQ-----TV---MGN--GV--QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQ 260 (569)
Q Consensus 193 ~pp~~-----~p---~~~--G~--k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~ 260 (569)
...+. +. ..+ +. .....++.||- +++|+|||++|.++|+|+++|||+|.|-.....
T Consensus 78 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~------~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~------ 145 (174)
T 1j4w_A 78 PGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPT------GKTGLIIGKGGETIKSISQQSGARIELQRNPPP------ 145 (174)
T ss_dssp --------------------------CEEEEEEET------TTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTT------
T ss_pred CCCCCCCCCCCCCCCCccccCCCCCcEEEEEEECh------HHcCeeECCCchHHHHHHHHHCCEEEECCCCCC------
Confidence 10000 00 000 00 12356777773 479999999999999999999999999864211
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHHHH
Q 008337 261 GEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 291 (569)
Q Consensus 261 g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL 291 (569)
..+ ...=.|.|+| +.+++++|++||+++|
T Consensus 146 ~~~-~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 146 NAD-PNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp TSC-TTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred CCC-CCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 111 1223577888 8999999999999985
No 8
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.07 E-value=3.5e-10 Score=103.71 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=106.9
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeee--ccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITR--GKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHA 178 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTR--GrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA 178 (569)
+..+|.|..- .++..+.| |+++++|++.|||.|.+. +.++| ...+| .+.|.|.. ..|++|
T Consensus 6 ~~~~i~vp~~--~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~----~~~er--~v~I~G~~---------~~v~~A 68 (178)
T 2anr_A 6 YFLKVLIPSY--AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP----GTTER--VCLIQGTI---------EALNAV 68 (178)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT----TSSEE--EEEEEECH---------HHHHHH
T ss_pred EEEEEEEChh--HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC----CCCCc--eEEEEeCH---------HHHHHH
Confidence 5556666543 37788886 899999999999998763 22221 12233 46789963 479999
Q ss_pred HHHHHHHHHcCCCCCCCcc----c-c--CCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeec
Q 008337 179 AAMVEEMLKQGHAGFPTLQ----T-V--MGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGR 251 (569)
Q Consensus 179 ~alIeEIIKE~p~~~pp~~----~-p--~~~G~k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGR 251 (569)
+.+|.+++.+.+....... + + ..+.-.....++.||- +++|+|||++|.++|.|+++|||+|.|-..
T Consensus 69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~------~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPN------STAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEH------HHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEch------hheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 9999999987643211000 0 0 0001123456778873 488999999999999999999999999754
Q ss_pred cCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008337 252 GSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 292 (569)
Q Consensus 252 GSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~ 292 (569)
... .. ...=.|.|+|. .+++++|+++++++|.
T Consensus 143 ~~~-------~~-~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 143 PDG-------IN-LQNRVVTVSGE-PEQNRKAVELIIQKIQ 174 (178)
T ss_dssp C------------CCEEEEEEESS-HHHHHHHHHHHHHHHH
T ss_pred CCC-------CC-CCceEEEEEcC-HHHHHHHHHHHHHHHH
Confidence 211 01 12245777776 5899999999999875
No 9
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.87 E-value=3.7e-09 Score=87.78 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=58.9
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
...+|.||-+ ++|+|||++|.++|.|+++|||+|.|...|+. ....+-+|.|+| +++++++|+++
T Consensus 14 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--------~~~~er~v~I~G-~~~~v~~A~~~ 78 (85)
T 2opv_A 14 TVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEM 78 (85)
T ss_dssp EEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--------STTSCEEEEEEE-CHHHHHHHHHH
T ss_pred EEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--------CCCCceEEEEEe-CHHHHHHHHHH
Confidence 4577888843 89999999999999999999999999876542 112345799999 99999999999
Q ss_pred HHHHHH
Q 008337 287 AENLLD 292 (569)
Q Consensus 287 iEnLL~ 292 (569)
|++|+.
T Consensus 79 I~~i~~ 84 (85)
T 2opv_A 79 VMDILR 84 (85)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999974
No 10
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.69 E-value=1.4e-08 Score=85.96 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=59.9
Q ss_pred ccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008337 205 QAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 284 (569)
Q Consensus 205 k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak 284 (569)
.....+|.||-+ ++|+|||++|.++|+|+++|||+|.|...|... ....-.|.|++ +++++++|+
T Consensus 13 ~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~r~v~I~G-~~~~v~~A~ 77 (94)
T 1x4m_A 13 GNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------TGADKPLRITG-DPYKVQQAK 77 (94)
T ss_dssp CCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------SCSCEEEEEEE-CTTTHHHHH
T ss_pred CcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------CCCceEEEEEe-CHHHHHHHH
Confidence 445678888854 899999999999999999999999998654321 12346788999 999999999
Q ss_pred HHHHHHHH
Q 008337 285 RLAENLLD 292 (569)
Q Consensus 285 ~LiEnLL~ 292 (569)
+||++||.
T Consensus 78 ~~I~~~i~ 85 (94)
T 1x4m_A 78 EMVLELIR 85 (94)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99999985
No 11
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.68 E-value=2e-08 Score=82.80 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=58.8
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
....+|.||-+ ++|.|||++|.++|+|+++|||+|.|... . .....-.|.|+| +++++++|++
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~---~~~~~~~v~I~G-~~~~v~~A~~ 68 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------L---EGSEDRIITITG-TQDQIQNAQY 68 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCT-------T---SCSSEEEEEEEE-CHHHHHHHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCC-------C---CCCCceEEEEEe-CHHHHHHHHH
Confidence 35677888854 88999999999999999999999999642 0 011235788999 6999999999
Q ss_pred HHHHHHHHHH
Q 008337 286 LAENLLDTIS 295 (569)
Q Consensus 286 LiEnLL~tV~ 295 (569)
|+++++....
T Consensus 69 ~I~~~i~~~~ 78 (82)
T 1zzk_A 69 LLQNSVKQYS 78 (82)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999987653
No 12
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.63 E-value=1.6e-08 Score=85.32 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=59.0
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|..... ....-.|.|+|. ++++++|++
T Consensus 14 ~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------g~~~r~v~I~G~-~e~v~~A~~ 76 (92)
T 1x4n_A 14 VMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSG----------GLPERSCMLTGT-PESVQSAKR 76 (92)
T ss_dssp CEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCT----------TCSEEEEEEEEC-HHHHHHHHH
T ss_pred CEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCC----------CCCccEEEEEeC-HHHHHHHHH
Confidence 45678888854 8999999999999999999999999985421 112356888886 999999999
Q ss_pred HHHHHHHHH
Q 008337 286 LAENLLDTI 294 (569)
Q Consensus 286 LiEnLL~tV 294 (569)
||+++|...
T Consensus 77 ~I~~~i~~~ 85 (92)
T 1x4n_A 77 LLDQIVEKG 85 (92)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999998764
No 13
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.62 E-value=3.7e-08 Score=79.47 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.8
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008337 208 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 287 (569)
Q Consensus 208 qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 287 (569)
..++.||-+ ++|+|||++|.++|.|+++|||+|.|...+... .....-.|.|+|. ++++++|++++
T Consensus 4 ~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------~~~~~~~v~I~G~-~~~v~~A~~~I 69 (76)
T 1dtj_A 4 LVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (76)
T ss_dssp EEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS-------TTCCEEEEEEEES-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCC-------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 356777743 789999999999999999999999998653211 1123357888886 99999999999
Q ss_pred HHHHH
Q 008337 288 ENLLD 292 (569)
Q Consensus 288 EnLL~ 292 (569)
+++|.
T Consensus 70 ~~~i~ 74 (76)
T 1dtj_A 70 SQRVT 74 (76)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 99874
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.60 E-value=2.7e-08 Score=96.79 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=98.0
Q ss_pred EEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 008337 104 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 182 (569)
Q Consensus 104 aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alI 182 (569)
..|.|..-. .+..+.+ |.++..|+++||+.|..-- .+... .|.+.+.+.| . .++++|+++|
T Consensus 36 ~~i~IP~~k--ig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V--~I~~~~~t~d-~---~~i~kA~~~I 97 (219)
T 2e3u_A 36 EYVKIPKDR--IAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEV--WITSTKETED-P---LAVWKARDIV 97 (219)
T ss_dssp EEEECCHHH--HHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEE--EEEECTTCCS-H---HHHHHHHHHH
T ss_pred EEEEeCHHH--hhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEE--EEecCCCCCC-H---HHHHHHHHHH
Confidence 467777655 7888887 8999999999999986531 13333 4666542111 1 4899999999
Q ss_pred HHHHHcCCCCCCCcc--ccCCCCcccceeEEEecC---CCCCCC--ceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCC
Q 008337 183 EEMLKQGHAGFPTLQ--TVMGNGVQAMSTSVFLGF---DADASL--NIAARIRGPNDQYINHIMNETGATVLLRGRGSGN 255 (569)
Q Consensus 183 eEIIKE~p~~~pp~~--~p~~~G~k~~qeKI~Ipl---d~~P~F--NfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~ 255 (569)
+.++... .++.. .-.+. ...+.+.|+. ..-+++ ..+|+|||++|.|+|.||+.|||+|+|-|+
T Consensus 98 ~~i~rg~---~~e~g~~ll~dd---~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~~---- 167 (219)
T 2e3u_A 98 LAIGRGF---SPERAFRLLNEG---EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYGK---- 167 (219)
T ss_dssp HHHHTTC---CHHHHGGGGSTT---CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEETT----
T ss_pred HHHhccC---CccccceeccCC---ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECCe----
Confidence 9987421 10000 00000 1122333331 111222 268999999999999999999999999642
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 008337 256 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 293 (569)
Q Consensus 256 ~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~t 293 (569)
.|+|.| +.++++.|++++++||+.
T Consensus 168 -------------~v~i~G-~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 168 -------------TVAIIG-NPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp -------------EEEEEE-CHHHHHHHHHHHHHHHTT
T ss_pred -------------EEEEEe-CHHHHHHHHHHHHHHHcC
Confidence 367777 788899999999999954
No 15
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.58 E-value=5.3e-08 Score=84.91 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=56.6
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008337 208 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 287 (569)
Q Consensus 208 qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 287 (569)
..+|.||-+ ++|+|||++|.+||+|+++|||+|.|.-.+ +....-.|.|++. ++++++|++||
T Consensus 12 ~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----------~~~~er~V~I~G~-~e~v~~A~~~I 74 (106)
T 2hh3_A 12 GIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----------GTGPEKIAHIMGP-PDRCEHAARII 74 (106)
T ss_dssp CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSC----------SSSSEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCC----------CCCceeEEEEEeC-HHHHHHHHHHH
Confidence 467778754 789999999999999999999999997431 1122357888886 99999999999
Q ss_pred HHHHHHH
Q 008337 288 ENLLDTI 294 (569)
Q Consensus 288 EnLL~tV 294 (569)
++||...
T Consensus 75 ~~ii~~~ 81 (106)
T 2hh3_A 75 NDLLQSL 81 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998754
No 16
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.57 E-value=2.8e-08 Score=83.21 Aligned_cols=74 Identities=23% Similarity=0.347 Sum_probs=58.7
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
....+|.||.+ ++|+|||++|.++|+|+++|||+|.|... .. + ...-.|.|+|. ++++++|++
T Consensus 13 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-------~~--~-~~~~~v~I~G~-~e~v~~A~~ 75 (89)
T 1j5k_A 13 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEP-------LE--G-SEDRIITITGT-QDQIQNAQY 75 (89)
T ss_dssp EEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSC-------CS--S-SSEEEEEEEEE-HHHHHHHHH
T ss_pred eEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCC-------CC--C-CCccEEEEEcC-HHHHHHHHH
Confidence 46678888854 89999999999999999999999999632 00 1 12356888887 999999999
Q ss_pred HHHHHHHHHHH
Q 008337 286 LAENLLDTISA 296 (569)
Q Consensus 286 LiEnLL~tV~e 296 (569)
||+++|.....
T Consensus 76 ~I~~~i~e~~g 86 (89)
T 1j5k_A 76 LLQNSVKQYSG 86 (89)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHhhhc
Confidence 99999876533
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=5.7e-08 Score=84.29 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008337 208 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 287 (569)
Q Consensus 208 qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 287 (569)
..+|.||-+ ++|+|||++|.+||+|+++|||+|.|.....- . .....-.|.|++ +.+++++|++||
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------~-~~~~~r~V~I~G-~~e~v~~A~~~I 73 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPP------N-GDPNFKLFIIRG-SPQQIDHAKQLI 73 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT------T-CCTTEEEEEEES-CHHHHHHHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC------C-CCCCceEEEEEC-CHHHHHHHHHHH
Confidence 467888754 88999999999999999999999999754211 0 111235677888 999999999999
Q ss_pred HHHHHH
Q 008337 288 ENLLDT 293 (569)
Q Consensus 288 EnLL~t 293 (569)
+++|..
T Consensus 74 ~~~i~e 79 (107)
T 2hh2_A 74 EEKIEG 79 (107)
T ss_dssp HHHSCS
T ss_pred HHHHhc
Confidence 999864
No 18
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.55 E-value=6.7e-08 Score=82.56 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=63.3
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
.....+.||.+ ++|+|||++|.+++.|+++|||+|.|-..|+. ..-.|.|+|. ++++++|++
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~-----------~~~~V~I~G~-~e~v~~A~~ 77 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAP-----------DPNCVTVTGL-PENVEEAID 77 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCS-----------CTTEEEEESC-HHHHHHHHH
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCC-----------CCcEEEEEcC-HHHHHHHHH
Confidence 35677888755 78999999999999999999999999655431 2357999998 699999999
Q ss_pred HHHHHHHHHHHhhcc
Q 008337 286 LAENLLDTISAECGA 300 (569)
Q Consensus 286 LiEnLL~tV~eE~~~ 300 (569)
++++|+....+++..
T Consensus 78 ~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 78 HILNLEEEYLADSGP 92 (95)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999887777654
No 19
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=1.3e-07 Score=80.93 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=61.6
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
.+..++.||-+ ++|+|||++|.++|+|+++|||+|.|--.|.. ....-.|.|+|. .+++++|++
T Consensus 16 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~---------~~~~~~V~I~G~-~e~v~~A~~ 79 (97)
T 2ctl_A 16 SFKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDG---------NQPQDQITITGY-EKNTEAARD 79 (97)
T ss_dssp TCEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTC---------SSCSSEEEEESC-HHHHHHHHH
T ss_pred ceeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCC---------CCCccEEEEEeC-HHHHHHHHH
Confidence 35677878744 78999999999999999999999999754321 113357999997 999999999
Q ss_pred HHHHHHHHHHHhh
Q 008337 286 LAENLLDTISAEC 298 (569)
Q Consensus 286 LiEnLL~tV~eE~ 298 (569)
+|++|+..+.++.
T Consensus 80 ~I~~iv~e~e~~~ 92 (97)
T 2ctl_A 80 AILRIVGELEQMS 92 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999998776543
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.52 E-value=4.9e-08 Score=79.19 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|... . +....-.|.|+|. ++++++|++|
T Consensus 5 ~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~------~~~~~~~v~I~G~-~~~v~~A~~~ 67 (76)
T 2p2r_A 5 TSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANP----V------EGSTDRQVTITGS-AASISLAQYL 67 (76)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCC----C------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCC----C------CCCCeEEEEEEeC-HHHHHHHHHH
Confidence 4567778743 89999999999999999999999999752 1 1123357889886 9999999999
Q ss_pred HHHHHH
Q 008337 287 AENLLD 292 (569)
Q Consensus 287 iEnLL~ 292 (569)
++++|.
T Consensus 68 I~~~i~ 73 (76)
T 2p2r_A 68 INVRLS 73 (76)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999874
No 21
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=7.6e-08 Score=80.04 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=58.5
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Q 008337 208 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLA 287 (569)
Q Consensus 208 qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~Li 287 (569)
..++.||-+ .+|+|||++|.++|+|+++|||+|.|...+... .....-.|.|+|. ++++++|++||
T Consensus 4 t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-------~g~~~r~v~I~G~-~~~v~~A~~~I 69 (87)
T 1ec6_A 4 LVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFL-------PGTRNRRVTITGS-PAATQAAQYLI 69 (87)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS-------TTSCEEEEEEESS-HHHHHHHHHHH
T ss_pred EEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC-------CCCCceEEEEEcC-HHHHHHHHHHH
Confidence 456777743 889999999999999999999999998542111 0112356888886 99999999999
Q ss_pred HHHHHHHHHh
Q 008337 288 ENLLDTISAE 297 (569)
Q Consensus 288 EnLL~tV~eE 297 (569)
+++|......
T Consensus 70 ~~~i~~~~~~ 79 (87)
T 1ec6_A 70 SQRVTYEQGV 79 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhccccc
Confidence 9999875443
No 22
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.51 E-value=1e-07 Score=82.09 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=58.0
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
...+|.||.+ ++|+|||++|.++|+|+++|||+|.|-....+. ..+.-.|.|+|.+. ++++|++|
T Consensus 15 ~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------~~~~~~V~I~G~~~-~v~~A~~~ 79 (104)
T 1we8_A 15 VFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT--------LLLSRLIKISGTQK-EVAAAKHL 79 (104)
T ss_dssp EEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------SSSEEEEEEEEEHH-HHHHHHHH
T ss_pred EEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------CCCcceEEEEcCHH-HHHHHHHH
Confidence 4577888854 899999999999999999999999997553211 11346788998766 79999999
Q ss_pred HHHHHHHH
Q 008337 287 AENLLDTI 294 (569)
Q Consensus 287 iEnLL~tV 294 (569)
|+++|...
T Consensus 80 I~~~i~e~ 87 (104)
T 1we8_A 80 ILEKVSED 87 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998653
No 23
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.51 E-value=6.6e-08 Score=81.99 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=58.4
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
....|.||-+ ++|.|||++|.++|+|+++|||+|.|-..+ ++.-.|.|+|. .+++++|+++
T Consensus 17 ~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------------~~~~~V~I~G~-~e~v~~A~~~ 77 (94)
T 2cte_A 17 ASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPD------------DPSNQIKITGT-KEGIEKARHE 77 (94)
T ss_dssp EEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTT------------SSCCEEEEEEC-HHHHHHHHHH
T ss_pred eEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCC------------CCCCeEEEEEC-HHHHHHHHHH
Confidence 5577888754 789999999999999999999999995331 11248999998 9999999999
Q ss_pred HHHHHHHHHH
Q 008337 287 AENLLDTISA 296 (569)
Q Consensus 287 iEnLL~tV~e 296 (569)
|++|+.....
T Consensus 78 I~~i~~~~~~ 87 (94)
T 2cte_A 78 VLLISAEQDK 87 (94)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHhhcccc
Confidence 9999876543
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.48 E-value=6.9e-08 Score=79.48 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=56.0
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
...++.||-+ ++|.|||++|.++|+|+++|||+|.|.... +....-.|.|+|. ++++++|++|
T Consensus 6 ~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~----------~~~~~r~v~I~G~-~~~v~~A~~~ 68 (82)
T 1wvn_A 6 TTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPV----------EGSSGRQVTITGS-AASISLAQYL 68 (82)
T ss_dssp EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCC----------TTCSEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCC----------CCCCceEEEEEcC-HHHHHHHHHH
Confidence 4567888854 889999999999999999999999997531 1123357888885 5999999999
Q ss_pred HHHHHHHH
Q 008337 287 AENLLDTI 294 (569)
Q Consensus 287 iEnLL~tV 294 (569)
|+++|..-
T Consensus 69 I~~~i~~~ 76 (82)
T 1wvn_A 69 INARLSSE 76 (82)
T ss_dssp HHHHTC--
T ss_pred HHHHHHhh
Confidence 99998643
No 25
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=1e-07 Score=82.62 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=60.8
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
..+.+.||-+ ++|+|||++|.++|.|+++|||+|.|--.|+ ++-.|.|+|.. +++++|+++
T Consensus 17 ~~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~------------~~~~V~I~G~~-e~v~~A~~~ 77 (104)
T 2ctk_A 17 VTIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL------------QSDIIAITGLA-ANLDRAKAG 77 (104)
T ss_dssp EEEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTT------------TCCEEEEEECH-HHHHHHHHH
T ss_pred EEEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCC------------CcceEEEEcCH-HHHHHHHHH
Confidence 4466777744 8899999999999999999999999964433 12389999985 999999999
Q ss_pred HHHHHHHHHHhh
Q 008337 287 AENLLDTISAEC 298 (569)
Q Consensus 287 iEnLL~tV~eE~ 298 (569)
|++|+.....+.
T Consensus 78 I~~i~~e~e~~~ 89 (104)
T 2ctk_A 78 LLERVKELQAEQ 89 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhhHHHhH
Confidence 999999888776
No 26
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=79.06 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=52.1
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
....+|.||- +++|.|||++|+++|+|+++|||+|+|-.++ +|+ .+.|++. .+++++|++
T Consensus 9 ~~~~~i~VP~------~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------------~~~-~v~ItG~-~e~v~~A~~ 68 (83)
T 2dgr_A 9 QTTIQVRVPY------RVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------------KEP-VFAVTGM-PENVDRARE 68 (83)
T ss_dssp SEEEEEECCH------HHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------------SCC-EEEEEEC-TTTHHHHHH
T ss_pred ceEEEEEeCh------HHeeeeECCCchHHHHHHHHhCCeEEecCCC------------CCC-eEEEEcC-HHHHHHHHH
Confidence 3556777773 5999999999999999999999999996431 132 3666665 599999999
Q ss_pred HHHHHH
Q 008337 286 LAENLL 291 (569)
Q Consensus 286 LiEnLL 291 (569)
+|++++
T Consensus 69 ~I~~~i 74 (83)
T 2dgr_A 69 EIEAHI 74 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999864
No 27
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.40 E-value=2e-07 Score=75.29 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=53.8
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
....+.||-+ ++|.|||++|.++++|+++|||+|.|--.|. .+-.|.|+|. .+.+++|+++
T Consensus 5 ~~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~------------~~~~V~I~G~-~~~v~~A~~~ 65 (71)
T 1vig_A 5 DYVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE------------KSNLIRIEGD-PQGVQQAKRE 65 (71)
T ss_dssp EEEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS------------SSEEEEEEES-SHHHHHHHHH
T ss_pred EEEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC------------cccEEEEEcC-HHHHHHHHHH
Confidence 4466777744 8899999999999999999999999864331 2247899998 6899999999
Q ss_pred HHHHH
Q 008337 287 AENLL 291 (569)
Q Consensus 287 iEnLL 291 (569)
+++|+
T Consensus 66 I~~i~ 70 (71)
T 1vig_A 66 LLELA 70 (71)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99885
No 28
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.36 E-value=2.1e-07 Score=75.40 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=54.7
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
...++.||- +.+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|+|. ++++.+|+++
T Consensus 5 ~~~~i~ip~------~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~------------~er~v~I~G~-~~~v~~A~~~ 65 (73)
T 2axy_A 5 LTIRLLMHG------KEVGSIIGKKGESVKKMREESGARINISEGNC------------PERIITLAGP-TNAIFKAFAM 65 (73)
T ss_dssp EEEEEEEEH------HHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC------------SEEEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEECh------hHeeeEECCCCHHHHHHHHHHCCEEEEecCCC------------CcEEEEEEeC-HHHHHHHHHH
Confidence 446677763 38999999999999999999999999974321 1235788888 9999999999
Q ss_pred HHHHHH
Q 008337 287 AENLLD 292 (569)
Q Consensus 287 iEnLL~ 292 (569)
++++|.
T Consensus 66 I~~~l~ 71 (73)
T 2axy_A 66 IIDKLE 71 (73)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999885
No 29
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.28 E-value=5.1e-07 Score=86.45 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=92.9
Q ss_pred EEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHH
Q 008337 105 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 183 (569)
Q Consensus 105 EIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alIe 183 (569)
.|.|-+-+ +-+++.+ |++...|++.+|+.|..-. .++.. .|.....+.|. .++.+|.++|+
T Consensus 7 ~i~VP~~r--vg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V--~i~t~~~t~dp----~~i~KA~dlI~ 68 (191)
T 1tua_A 7 YVKVKPER--LGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMV--IVEPEAEGIPP----VNLMKAAEVVK 68 (191)
T ss_dssp EEECCGGG--HHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEE--EEEESSTTSCH----HHHHHHHHHHH
T ss_pred EEECCHHH--hhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeE--EEEeCCCCCCH----HHHHHHHHHHH
Confidence 34444333 4455555 8999999999999987743 24433 34422211121 37889999998
Q ss_pred HHHHcCCCCCCCcc---ccCCCCcccceeEEEecCCCC-CC-----CceeEEEeCCCchhHHHHHHhhCcEEEEeeccCC
Q 008337 184 EMLKQGHAGFPTLQ---TVMGNGVQAMSTSVFLGFDAD-AS-----LNIAARIRGPNDQYINHIMNETGATVLLRGRGSG 254 (569)
Q Consensus 184 EIIKE~p~~~pp~~---~p~~~G~k~~qeKI~Ipld~~-P~-----FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg 254 (569)
.+...-. +.+ .-.+. ..-+.+.|+ .+ .. -..+|+|||++|.|+|.||+.|||+|.|-|+
T Consensus 69 ai~rgf~----~e~A~~Ll~Dd---~~~e~i~i~--~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~--- 136 (191)
T 1tua_A 69 AISLGFP----PEKAFRLLEED---QILVVVDLK--QVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGEY--- 136 (191)
T ss_dssp HHHHTCC----HHHHGGGGSTT---EEEEEEETH--HHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECSS---
T ss_pred HHHcCCC----HHHhhhcccCc---ceeEEEEcc--cccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcCC---
Confidence 8776421 100 00000 112233232 11 00 1278999999999999999999999999653
Q ss_pred CCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 008337 255 NSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 293 (569)
Q Consensus 255 ~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~t 293 (569)
.++|.| +++.++.|++.+++||..
T Consensus 137 --------------~v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 --------------EVAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp --------------EEEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred --------------EEEEEe-ChHHHHHHHHHHHHHHcC
Confidence 577776 789999999999999964
No 30
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.25 E-value=3.4e-06 Score=76.46 Aligned_cols=137 Identities=15% Similarity=0.277 Sum_probs=91.6
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
|+.++.|..=+ +...+.+ |+++..|++++|..|. .|- .++-.| .+.+.+ + ..|.++.
T Consensus 4 ~~~~~~Vp~~~--vG~~IG~~G~~I~~i~~e~gI~ii---~~~-------~~~~~~-i~~~~~--p------~~v~~~~- 61 (144)
T 2qnd_A 4 FHEQFIVREDL--MGLAIGTHGANIQQARKVPGVTAI---DLD-------EDTCTF-HIYGED--Q------DAVKKAR- 61 (144)
T ss_dssp CEEEEECCGGG--HHHHHCGGGHHHHHHHTSTTEEEE---EEE-------TTTTEE-EEEESS--H------HHHHHHH-
T ss_pred eEEEEEECCcc--eeeEECCChhHHHHHHHHHCCeEe---ccC-------CCchhe-eeccCC--H------HHHHHHH-
Confidence 56777776665 7778875 9999999999993332 121 123334 566654 2 2454443
Q ss_pred HHHHHHHcCCCCCCCccccCCCCcccceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCc-EEEEeeccCCCCCCC
Q 008337 181 MVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGA-TVLLRGRGSGNSEGL 259 (569)
Q Consensus 181 lIeEIIKE~p~~~pp~~~p~~~G~k~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGa-KI~IRGRGSg~~E~~ 259 (569)
++|.- .+..|.||-+ .+|++||.+|.|+|.|+++||| +|.|.+.....
T Consensus 62 ---~~l~~------------------~e~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~---- 110 (144)
T 2qnd_A 62 ---SFLEF------------------AEDVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN---- 110 (144)
T ss_dssp ---HHHCE------------------EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----
T ss_pred ---Hhhhc------------------ceEEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----
Confidence 33321 1256677633 7899999999999999999997 99999763221
Q ss_pred CCCCCCCCc-EEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008337 260 QGEEVHQPL-HLFLSSNNPKSLEEAKRLAENLLDTI 294 (569)
Q Consensus 260 ~g~EsdEPL-HV~Isa~~~e~v~~Ak~LiEnLL~tV 294 (569)
...++.+ -|.|+| +.+++++|++|++++|+.+
T Consensus 111 --~~~~~~~~~vtI~G-~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 111 --VPQEEGMVPFVFVG-TKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp --CCCCTTEEEEEEEE-EHHHHHHHHHHHHHHHHTC
T ss_pred --ccccCCeeEEEEEe-CHHHHHHHHHHHHHHHHhc
Confidence 1112333 255665 8889999999999999753
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.03 E-value=6.5e-06 Score=73.85 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=54.2
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008337 209 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 288 (569)
Q Consensus 209 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE 288 (569)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. .....-.|.|+| +++.+++|+.+|.
T Consensus 4 ~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~--------~~~~~r~v~I~G-~~~~v~~A~~~I~ 68 (164)
T 2jvz_A 4 QEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--------NTNVDKPLRIIG-DPYKVQQACEMVM 68 (164)
T ss_dssp EEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTS--------SSSSCEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCC--------CCCCceEEEEEc-CHHHHHHHHHHHH
Confidence 56777744 79999999999999999999999998532210 112234688888 8899999999999
Q ss_pred HHHHH
Q 008337 289 NLLDT 293 (569)
Q Consensus 289 nLL~t 293 (569)
+++..
T Consensus 69 ~ii~e 73 (164)
T 2jvz_A 69 DILRE 73 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 98753
No 32
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.02 E-value=3e-06 Score=72.66 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=57.0
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhh-CcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 284 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ET-GaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak 284 (569)
..++.|.||-+ +.+.||||+|.+++.|++|| ||+|.|--.|++ .-.|.|.|.+. .+++|+
T Consensus 16 ~vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~------------~~~V~I~G~~~-~v~~A~ 76 (95)
T 2ctj_A 16 IAEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSG------------SDTVVIRGPSS-DVEKAK 76 (95)
T ss_dssp SCCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTT------------CCEEEEESCHH-HHHHHH
T ss_pred cEEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCC------------cceEEEEcCHH-HHHHHH
Confidence 34567778754 77899999999999999999 999988644321 24799999988 999999
Q ss_pred HHHHHHHHHH
Q 008337 285 RLAENLLDTI 294 (569)
Q Consensus 285 ~LiEnLL~tV 294 (569)
+++++|+..+
T Consensus 77 ~~I~~iv~e~ 86 (95)
T 2ctj_A 77 KQLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999998654
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.01 E-value=3.6e-06 Score=76.96 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=55.0
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008337 209 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 288 (569)
Q Consensus 209 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE 288 (569)
.++.||-+ .+|+|||++|.++|+|+++|||+|.|...- .....-.|.|+|. .+.+++|+++|+
T Consensus 5 ~~~~vp~~------~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~----------~~~~~r~v~I~G~-~~~v~~A~~~I~ 67 (174)
T 1j4w_A 5 IDVPIPRF------AVGIVIGRNGEMIKKIQNDAGVRIQFKPDD----------GTTPERIAQITGP-PDRAQHAAEIIT 67 (174)
T ss_dssp EEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEEECCT----------TSCSEEEEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEEChh------heeeeecCCchHHHHHHHHhCCEEEEecCC----------CCCCccEEEEEeC-HHHHHHHHHHHH
Confidence 46667643 899999999999999999999999996320 0112246778877 899999999999
Q ss_pred HHHHHHH
Q 008337 289 NLLDTIS 295 (569)
Q Consensus 289 nLL~tV~ 295 (569)
++|....
T Consensus 68 ~~~~~~~ 74 (174)
T 1j4w_A 68 DLLRSVQ 74 (174)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 9987653
No 34
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.79 E-value=5.3e-06 Score=71.42 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=52.7
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcE-EEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGAT-VLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaK-I~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
+.+.+.|+.+ .+|.+|||+|.++|.|+++|||+ |-|- ++.=.|.|.|.+.+.+++|++
T Consensus 15 ~i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~---------------eddG~V~I~g~~~ea~~~A~~ 73 (91)
T 2cpq_A 15 FHEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELD---------------EDTGTFRIYGESADAVKKARG 73 (91)
T ss_dssp EEEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEE---------------TTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEE---------------cCCCEEEEEECCHHHHHHHHH
Confidence 3455666643 88999999999999999999998 9993 123579999999999999999
Q ss_pred HHHHHH
Q 008337 286 LAENLL 291 (569)
Q Consensus 286 LiEnLL 291 (569)
+++.+-
T Consensus 74 ~I~~ie 79 (91)
T 2cpq_A 74 FLEFVE 79 (91)
T ss_dssp HHSCCC
T ss_pred HHHhhh
Confidence 998653
No 35
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=97.72 E-value=1.7e-05 Score=71.23 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=54.2
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
...++.||-+ .+|.|||++|.++|+|+++|||+|.|-..|+ ..-.|.|+|. .+.+.+|+.+
T Consensus 5 ~~~~~~vp~~------~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~------------~~r~v~I~G~-~~~v~~A~~~ 65 (160)
T 2jzx_A 5 LTIRLLMHGK------EVGSIIGKKGESVKKMREESGARINISEGNC------------PERIITLAGP-TNAIFKAFAM 65 (160)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCSEEEEECCTT------------TEEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEEEEchh------heeeeECCCcHHHHHHHHHHCCEEEEcCCCC------------CceEEEEEeC-HHHHHHHHHH
Confidence 3456667633 8999999999999999999999999975321 1246778886 8999999999
Q ss_pred HHHHHHH
Q 008337 287 AENLLDT 293 (569)
Q Consensus 287 iEnLL~t 293 (569)
+.+++..
T Consensus 66 I~~~i~e 72 (160)
T 2jzx_A 66 IIDKLEE 72 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888765
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.71 E-value=3.1e-05 Score=69.77 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=53.3
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008337 209 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 288 (569)
Q Consensus 209 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE 288 (569)
.++.||-+ ++|.|||++|.++|+|+++|||+|.|--.+.. ....-.|.|+| +++++.+|+.+|.
T Consensus 5 ~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------~~~~r~v~I~G-~~e~v~~A~~~I~ 68 (163)
T 3krm_A 5 VQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP---------DSKVRMVIITG-PPEAQFKAQGRIY 68 (163)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---------TCSEEEEEEEE-CHHHHHHHHHHHH
T ss_pred EEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---------CCCceEEEEEc-CHHHHHHHHHHHH
Confidence 45666643 78999999999999999999999999754211 11223477777 8999999999998
Q ss_pred HHHHH
Q 008337 289 NLLDT 293 (569)
Q Consensus 289 nLL~t 293 (569)
+++..
T Consensus 69 ~~~~e 73 (163)
T 3krm_A 69 GKLKE 73 (163)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 37
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.66 E-value=2.7e-05 Score=71.25 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=53.4
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
+..++.||-+ ++|.|||++|.++|+|+++|||+|.|.-.+-.. . ...| =.|.|+|. .+++.+|+++
T Consensus 6 ~~~~i~vp~~------~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~----~--~~~e-r~v~I~G~-~~~v~~A~~~ 71 (178)
T 2anr_A 6 YFLKVLIPSY------AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY----P--GTTE-RVCLIQGT-IEALNAVHGF 71 (178)
T ss_dssp EEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC----T--TSSE-EEEEEEEC-HHHHHHHHHH
T ss_pred EEEEEEEChh------HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC----C--CCCC-ceEEEEeC-HHHHHHHHHH
Confidence 4567777743 899999999999999999999999996432111 0 1111 24667775 8899999999
Q ss_pred HHHHHH
Q 008337 287 AENLLD 292 (569)
Q Consensus 287 iEnLL~ 292 (569)
+++++.
T Consensus 72 I~~~~~ 77 (178)
T 2anr_A 72 IAEKIR 77 (178)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988874
No 38
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.65 E-value=0.00011 Score=65.80 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=58.1
Q ss_pred EEEEEEeC--C-CCc--ccchhcc-chhHHHHHHHHhCCeEeeecc---ccCCCCCCCCCCCeEEEEEeccchhhHHHHH
Q 008337 102 IAREIVIN--D-SES--SVRYKLT-KRHTQEEIQKCTGAVVITRGK---YRLPNAPPDGEKPLYLHISAGAHLKETAERI 172 (569)
Q Consensus 102 f~aEIEIN--D-lPq--~~R~~LT-Kg~Tq~eIqe~TGA~VtTRGr---Y~PPgk~~~gEpPLYL~Ieg~te~kdTaERi 172 (569)
+.+.|.|. + +|. ..+..|. .|.|++.|+++|||.|..||+ |+-+......+.+||++|++.+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~-------- 83 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP-------- 83 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH--------
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH--------
Confidence 55666553 2 453 4566666 599999999999999999976 22222223445689999999874
Q ss_pred HHHHHHHHHHHHHHHc
Q 008337 173 LAVDHAAAMVEEMLKQ 188 (569)
Q Consensus 173 ~aVdrA~alIeEIIKE 188 (569)
+++++|+++|++|+..
T Consensus 84 e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 84 EGLAAAKKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 5899999999999974
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.55 E-value=0.00015 Score=65.67 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=57.4
Q ss_pred EEEEEEeC--CCCcc---cchhccchhHHHHHHHHhCCeEeeeccccCC-CC--C------CCCCCCeEEEEEeccchhh
Q 008337 102 IAREIVIN--DSESS---VRYKLTKRHTQEEIQKCTGAVVITRGKYRLP-NA--P------PDGEKPLYLHISAGAHLKE 167 (569)
Q Consensus 102 f~aEIEIN--DlPq~---~R~~LTKg~Tq~eIqe~TGA~VtTRGrY~PP-gk--~------~~gEpPLYL~Ieg~te~kd 167 (569)
+...|.|. ++|.- -|..=.+|.|+++|+++|||.|.+||+.--. ++ . ...+.+||++|++.+.
T Consensus 7 ~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~--- 83 (131)
T 1k1g_A 7 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM--- 83 (131)
T ss_dssp EEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH---
T ss_pred EEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH---
Confidence 45555554 45522 2555568999999999999999998864211 11 1 1234589999999874
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 008337 168 TAERILAVDHAAAMVEEMLKQG 189 (569)
Q Consensus 168 TaERi~aVdrA~alIeEIIKE~ 189 (569)
..+++|+++|+++|++.
T Consensus 84 -----e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 -----ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp -----HHHHHHHHHHHHHHTTT
T ss_pred -----HHHHHHHHHHHHHHhcc
Confidence 57999999999999863
No 40
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.27 E-value=0.00012 Score=80.91 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=50.4
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHH
Q 008337 209 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAE 288 (569)
Q Consensus 209 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiE 288 (569)
..+-|+.+ .+|.||||+|.++|.|++||||+|.|- +.=.|.|.+.+.+.+++|+++|+
T Consensus 569 ~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------------d~G~V~I~~~~~~~~~~A~~~I~ 626 (630)
T 3u1k_A 569 ETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTISQV----------------DEETFSVFAPTPSAMHEARDFIT 626 (630)
T ss_dssp EEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEEEC----------------SSSEEEEEESSHHHHHHHHHHTT
T ss_pred EEEEeChh------HhheeECCCChhHHHHHHHHCCEEEEc----------------CCcEEEEEeCCHHHHHHHHHHHH
Confidence 45556543 788999999999999999999999874 22479999999999999999999
Q ss_pred HHHH
Q 008337 289 NLLD 292 (569)
Q Consensus 289 nLL~ 292 (569)
+|+.
T Consensus 627 ~i~~ 630 (630)
T 3u1k_A 627 EICK 630 (630)
T ss_dssp C---
T ss_pred HHhC
Confidence 8863
No 41
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.10 E-value=0.0009 Score=57.87 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=56.9
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHh-hCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNE-TGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~E-TGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
.+.+|.||-+ |.+.|||++|+++|+|+.+ ++++|.|=. + .--|.|.|+ .+.|++|+.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------------~---~~~ItI~G~-~~~V~~a~~ 84 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE------------G---EDKITLEGP-TEDVSVAQE 84 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS------------S---SCEEEEEEC-HHHHHHHHH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC------------C---CCEEEEECC-HHHHHHHHH
Confidence 5567777744 6678999999999999997 688886542 1 126999999 899999999
Q ss_pred HHHHHHHHHHHhhc
Q 008337 286 LAENLLDTISAECG 299 (569)
Q Consensus 286 LiEnLL~tV~eE~~ 299 (569)
.++.|++.+.++..
T Consensus 85 ~I~~~v~el~~~~~ 98 (102)
T 2ctf_A 85 QIEGMVKDLINRSG 98 (102)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998887753
No 42
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.77 E-value=0.00085 Score=75.27 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=13.7
Q ss_pred eeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008337 223 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASR 302 (569)
Q Consensus 223 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~tV~eE~~~fr 302 (569)
.++.||||+|.+||.|++||||+|-|. |.-.|.|.+.+.+.+++|+++++.|+....
T Consensus 580 ki~~vig~gg~~i~~i~~~tg~~idi~----------------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~------- 636 (726)
T 4aid_A 580 KIREVIGSGGKVIREIVATTGAKVDIN----------------DDGVVKVSASDGAKIKAAIDWIKSITDEAE------- 636 (726)
T ss_dssp --------------------------------------------------CCSCHHHHHHHHHC----------------
T ss_pred HHHhhcCCCchhHHHHHHHHCCceeEE----------------CCceEEEEeCCHHHHHHHHHHHHHHhhhhc-------
Confidence 678899999999999999999999764 235678999999999999999999986332
Q ss_pred cccccccccCCCchhhcccccCcCcccccCcccchhhcccccc
Q 008337 303 VSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 345 (569)
Q Consensus 303 ~~~~k~y~avPppq~~l~Gv~~s~~~~~~~~~~~~~~~~~~~~ 345 (569)
....|. --+.+|..+|..-.+.. ..-||.|--++
T Consensus 637 --vG~v~~------G~V~~I~~fGaFVel~~-g~eGLvHiSel 670 (726)
T 4aid_A 637 --VGKIYD------GKVVKVVDFGAFVNFFG-AKDGLVHVSQI 670 (726)
T ss_dssp -------------------------------------------
T ss_pred --CCcEEE------EEEEEEeccEEEEEECC-CcEEEEEHHHc
Confidence 123333 34666666674433322 25566664433
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=96.58 E-value=0.0036 Score=57.54 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=47.2
Q ss_pred chhHHHHHHHHhCCeEeeeccccCC---------CCC--CCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHc
Q 008337 121 KRHTQEEIQKCTGAVVITRGKYRLP---------NAP--PDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQ 188 (569)
Q Consensus 121 Kg~Tq~eIqe~TGA~VtTRGrY~PP---------gk~--~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alIeEIIKE 188 (569)
+|.|++.|+++|||.|..||+=--- +.+ ...+-|||++|++.+. .+.++ ..+++|+++|+.+|..
T Consensus 26 rG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~-~~~~~--~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 26 RGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA-QNRAE--LKLKRAVEEVKKLLVP 101 (140)
T ss_dssp THHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC-CHHHH--HHHHHHHHHHHHHSSC
T ss_pred CcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc-hhhHH--HHHHHHHHHHHHHCCC
Confidence 7999999999999999999852100 000 1246789999999764 11121 4689999999999864
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.57 E-value=0.0033 Score=65.86 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=48.9
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCc--hhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAK 284 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrG--stlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak 284 (569)
+...|-|+-+ +...|||.+| ..|++|+++|||+|.+-..++... .....-.|.|+| ..++|.+|+
T Consensus 186 ~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d------~~~~~~~ItItG-s~e~V~~Ar 252 (376)
T 3n89_A 186 FTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE------TRGNIYEIKVVG-NIDNVLKAR 252 (376)
T ss_dssp EEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC---------------CCEEEEEEES-CHHHHHHHH
T ss_pred eEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc------ccCCceEEEEEe-CHHHHHHHH
Confidence 4455555533 4567999999 456999999999999876644310 111234688888 999999999
Q ss_pred HHHHHHH
Q 008337 285 RLAENLL 291 (569)
Q Consensus 285 ~LiEnLL 291 (569)
+.+++||
T Consensus 253 k~I~~lL 259 (376)
T 3n89_A 253 RYIMDLL 259 (376)
T ss_dssp HHHHHTS
T ss_pred HHHHhhC
Confidence 9999887
No 45
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=96.45 E-value=0.0017 Score=63.17 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=51.8
Q ss_pred eEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCC----HHHHHHHH
Q 008337 209 TSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN----PKSLEEAK 284 (569)
Q Consensus 209 eKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~----~e~v~~Ak 284 (569)
.+|.||-+ .+|.|||++|.+++.|+++|||+|.|--. .=.|.|.+.+ ++.+++|+
T Consensus 36 ~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~---------------~g~V~I~~~~~t~d~~~i~kA~ 94 (219)
T 2e3u_A 36 EYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSE---------------TGEVWITSTKETEDPLAVWKAR 94 (219)
T ss_dssp EEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTT---------------TCEEEEEECTTCCSHHHHHHHH
T ss_pred EEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcC---------------CCEEEEecCCCCCCHHHHHHHH
Confidence 56777744 78899999999999999999999998421 1247788776 99999999
Q ss_pred HHHHHHH
Q 008337 285 RLAENLL 291 (569)
Q Consensus 285 ~LiEnLL 291 (569)
++|+.|.
T Consensus 95 ~~I~~i~ 101 (219)
T 2e3u_A 95 DIVLAIG 101 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 46
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.20 E-value=0.0021 Score=67.25 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=53.5
Q ss_pred cccceeEEEecCCCCCCCceeEEEeCCCc--hhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHH
Q 008337 204 VQAMSTSVFLGFDADASLNIAARIRGPND--QYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLE 281 (569)
Q Consensus 204 ~k~~qeKI~Ipld~~P~FNfvgrIIGPrG--stlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~ 281 (569)
+...+.++.|+-. |...|||.+| ++|++|++||||+|.+=-++.....+ ...---|.|+| ..++|+
T Consensus 27 ~~~VTl~v~Ip~~------~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~-----~~ks~~VtItG-~~enVE 94 (376)
T 3n89_A 27 PTRVTLNMEFESQ------YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTP-----DPFAQQVTITG-YFGDVD 94 (376)
T ss_dssp TTEEEEEEECCGG------GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSC-----CTTTTEEEEEE-EHHHHH
T ss_pred CCEEEEEEEEchh------hhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCC-----cCCCCeEEEEc-CHHHHH
Confidence 3456677877743 7778999999 99999999999999996443111000 01112366666 577999
Q ss_pred HHHHHHHHHH
Q 008337 282 EAKRLAENLL 291 (569)
Q Consensus 282 ~Ak~LiEnLL 291 (569)
+||+.+.+|+
T Consensus 95 ~AR~~I~~l~ 104 (376)
T 3n89_A 95 RARMLMRRNC 104 (376)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcC
Confidence 9999998863
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=95.92 E-value=0.0033 Score=56.93 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=47.3
Q ss_pred ceeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHH
Q 008337 207 MSTSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRL 286 (569)
Q Consensus 207 ~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~L 286 (569)
+++++.||-+ ++|.+||++|.+++.|++|+| |.|-- .+++|--+.+.+.+++.+.+|+.|
T Consensus 4 ~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~------------~~~~~~~~i~~~~~p~~v~~~~~~ 63 (144)
T 2qnd_A 4 FHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAID------------LDEDTCTFHIYGEDQDAVKKARSF 63 (144)
T ss_dssp CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEE------------EETTTTEEEEEESSHHHHHHHHHH
T ss_pred eEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEec------------cCCCchheeeccCCHHHHHHHHHh
Confidence 4567777744 899999999999999999999 44321 123455678889999999999875
Q ss_pred H
Q 008337 287 A 287 (569)
Q Consensus 287 i 287 (569)
+
T Consensus 64 l 64 (144)
T 2qnd_A 64 L 64 (144)
T ss_dssp H
T ss_pred h
Confidence 4
No 48
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=95.62 E-value=0.078 Score=43.62 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCC-CCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNA-PPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk-~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
...+|.|..- .++..+.| |+++++|+++|||.|..... +. ....++. +.|.| +. ..+++|+
T Consensus 14 ~~~~i~Ip~~--~ig~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~er~--v~I~G-~~--------~~v~~A~ 76 (85)
T 2opv_A 14 TVQEIMIPAG--KAGLVIGKGGETIKQLQERAGVKMILIQD----GSQNTNVDKP--LRIIG-DP--------YKVQQAC 76 (85)
T ss_dssp EEEEEEECTT--THHHHHTTTTHHHHHHHHHHTCEEEECSS----SCSSTTSCEE--EEEEE-CH--------HHHHHHH
T ss_pred EEEEEEeChh--heeeeECCCCHHHHHHHHHHCCEEEEcCC----CCCCCCCceE--EEEEe-CH--------HHHHHHH
Confidence 5678888754 48888887 99999999999999987431 11 1234554 56888 42 5799999
Q ss_pred HHHHHHHHc
Q 008337 180 AMVEEMLKQ 188 (569)
Q Consensus 180 alIeEIIKE 188 (569)
.+|++++++
T Consensus 77 ~~I~~i~~e 85 (85)
T 2opv_A 77 EMVMDILRE 85 (85)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhcC
Confidence 999999864
No 49
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=95.34 E-value=0.088 Score=43.04 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=52.9
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..-- ++..+.| |.++++|+++|||.|.+... .++...-.+.|.|.. +.|++|+.
T Consensus 7 ~~~~i~Vp~~~--vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 68 (82)
T 1zzk_A 7 ITTQVTIPKDL--AGSIIGKGGQRIKQIRHESGASIKIDEP-------LEGSEDRIITITGTQ---------DQIQNAQY 68 (82)
T ss_dssp EEEEEEEETTT--GGGGTCGGGHHHHHHHHHHCCEEEECCT-------TSCSSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChHh--cCeeECCCchHHHHHHHHHCCEEEEcCC-------CCCCCceEEEEEeCH---------HHHHHHHH
Confidence 66778886644 8889997 89999999999999987531 112222456899953 48999999
Q ss_pred HHHHHHHcC
Q 008337 181 MVEEMLKQG 189 (569)
Q Consensus 181 lIeEIIKE~ 189 (569)
+|++++++.
T Consensus 69 ~I~~~i~~~ 77 (82)
T 1zzk_A 69 LLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999864
No 50
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=94.99 E-value=0.076 Score=42.38 Aligned_cols=71 Identities=21% Similarity=0.189 Sum_probs=50.1
Q ss_pred EEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHH
Q 008337 103 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 181 (569)
Q Consensus 103 ~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~al 181 (569)
..+|.|..-- ++..+.+ |.++.+|++.|||.|.+... +...++..--.+.|.|.. ..+++|+.+
T Consensus 4 ~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~~~~v~I~G~~---------~~v~~A~~~ 68 (76)
T 1dtj_A 4 LVEMAVPENL--VGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYL 68 (76)
T ss_dssp EEEEEEETTT--HHHHHCSTTHHHHHHHHHHCCEEEECCT----TCCSTTCCEEEEEEEESH---------HHHHHHHHH
T ss_pred EEEEEEChHH--cceEECCCchHHHHHHHHhCCEEEECcC----CCCCCCCceeEEEEEeCH---------HHHHHHHHH
Confidence 4456665543 7888886 89999999999999977431 111123334566888964 489999999
Q ss_pred HHHHHHc
Q 008337 182 VEEMLKQ 188 (569)
Q Consensus 182 IeEIIKE 188 (569)
|.+++.+
T Consensus 69 I~~~i~e 75 (76)
T 1dtj_A 69 ISQRVTY 75 (76)
T ss_dssp HHHHCC-
T ss_pred HHHHHhc
Confidence 9998765
No 51
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=94.69 E-value=0.064 Score=43.10 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=51.6
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..- .++..+.+ |.++.+|++.|||.|.+... .++..--.+.|.|.. ..|++|+.
T Consensus 5 ~~~~i~Ip~~--~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~~~~~~v~I~G~~---------~~v~~A~~ 66 (76)
T 2p2r_A 5 TSHELTIPND--LIGCIIGRQGAKINEIRQMSGAQIKIANP-------VEGSTDRQVTITGSA---------ASISLAQY 66 (76)
T ss_dssp EEEEEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChH--HcceEECCCChHHHHHHHHHCCEEEEcCC-------CCCCCeEEEEEEeCH---------HHHHHHHH
Confidence 5566666543 37788886 89999999999999987541 112222356788963 48999999
Q ss_pred HHHHHHHcC
Q 008337 181 MVEEMLKQG 189 (569)
Q Consensus 181 lIeEIIKE~ 189 (569)
+|.+++.++
T Consensus 67 ~I~~~i~~E 75 (76)
T 2p2r_A 67 LINVRLSSE 75 (76)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHcc
Confidence 999999765
No 52
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=94.58 E-value=0.086 Score=43.01 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.2
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..-- ++..+.+ |.++.+|+++|||.|.+... .++..--.+.|.|.. ..|++|+.
T Consensus 6 ~~~~i~Ip~~~--vg~IIGkgG~~Ik~I~~~sga~I~i~~~-------~~~~~~r~v~I~G~~---------~~v~~A~~ 67 (82)
T 1wvn_A 6 TTHELTIPNNL--IGCIIGRQGANINEIRQMSGAQIKIANP-------VEGSSGRQVTITGSA---------ASISLAQY 67 (82)
T ss_dssp EEEEEEEEGGG--HHHHHCGGGHHHHHHHHHHCCEEEECCC-------CTTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEchHh--ccceeCCCchhHHHHHHHhCCEEEEecC-------CCCCCceEEEEEcCH---------HHHHHHHH
Confidence 55677776543 7888887 89999999999999987542 122222356788974 47999999
Q ss_pred HHHHHHHcC
Q 008337 181 MVEEMLKQG 189 (569)
Q Consensus 181 lIeEIIKE~ 189 (569)
+|.+++.++
T Consensus 68 ~I~~~i~~~ 76 (82)
T 1wvn_A 68 LINARLSSE 76 (82)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHhh
Confidence 999998876
No 53
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=94.37 E-value=0.064 Score=44.94 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=53.7
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..- .++..+.+ |.++++|+++|||.|.+...- ++..--.+.|.|.. +.|++|+.
T Consensus 15 ~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-------~g~~~r~v~I~G~~---------e~v~~A~~ 76 (92)
T 1x4n_A 15 MTEEYKVPDG--MVGFIIGRGGEQISRIQQESGCKIQIAPDS-------GGLPERSCMLTGTP---------ESVQSAKR 76 (92)
T ss_dssp EEEEEEEEHH--HHHHHHCSSSHHHHHHHHHSCCEEEECSCC-------TTCSEEEEEEEECH---------HHHHHHHH
T ss_pred EEEEEEEChH--HcceeECCCchHHHHHHHHhCCEEEEcCCC-------CCCCccEEEEEeCH---------HHHHHHHH
Confidence 6677777654 37888886 899999999999999875421 12223456788963 48999999
Q ss_pred HHHHHHHcCC
Q 008337 181 MVEEMLKQGH 190 (569)
Q Consensus 181 lIeEIIKE~p 190 (569)
+|++++.+..
T Consensus 77 ~I~~~i~~~~ 86 (92)
T 1x4n_A 77 LLDQIVEKGR 86 (92)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 54
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.35 E-value=0.077 Score=44.62 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=52.8
Q ss_pred cEEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 101 IIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 101 ~f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
.+..+|.|..- .++..+-| |+++++|+++|||.|.+...-.+ ....++ .+.|.|.. +.|++|+
T Consensus 14 ~~~~~i~Ip~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r--~v~I~G~~---------~~v~~A~ 77 (94)
T 1x4m_A 14 NAVQEIMIPAS--KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADK--PLRITGDP---------YKVQQAK 77 (94)
T ss_dssp CEEEEEEECHH--HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCE--EEEEEECT---------TTHHHHH
T ss_pred cEEEEEEEChh--hcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCce--EEEEEeCH---------HHHHHHH
Confidence 36778888654 47888887 99999999999999976321100 112344 45788943 3799999
Q ss_pred HHHHHHHHcC
Q 008337 180 AMVEEMLKQG 189 (569)
Q Consensus 180 alIeEIIKE~ 189 (569)
.+|++++++.
T Consensus 78 ~~I~~~i~~~ 87 (94)
T 1x4m_A 78 EMVLELIRDQ 87 (94)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHhcc
Confidence 9999999874
No 55
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.11 E-value=0.078 Score=45.74 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=52.2
Q ss_pred EEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 008337 104 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 182 (569)
Q Consensus 104 aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alI 182 (569)
.+|.|..- .++..|-| |+++++|+++|||.|.+...-.+ ..+..--.+.|.|.. ++|++|+.+|
T Consensus 9 ~~i~IP~~--~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~----~~~~~~r~V~I~G~~---------e~v~~A~~~I 73 (107)
T 2hh2_A 9 MTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLPP----NGDPNFKLFIIRGSP---------QQIDHAKQLI 73 (107)
T ss_dssp EEEEEEGG--GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT----TCCTTEEEEEEESCH---------HHHHHHHHHH
T ss_pred EEEEECHH--HcCccCCCCcHHHHHHHHHhCCEEEEcCccCC----CCCCCceEEEEECCH---------HHHHHHHHHH
Confidence 45666543 47888887 89999999999999987542111 111222456899943 5899999999
Q ss_pred HHHHHcCCC
Q 008337 183 EEMLKQGHA 191 (569)
Q Consensus 183 eEIIKE~p~ 191 (569)
++++.+...
T Consensus 74 ~~~i~e~~~ 82 (107)
T 2hh2_A 74 EEKIEGPLC 82 (107)
T ss_dssp HHHSCSCCC
T ss_pred HHHHhcccc
Confidence 999988754
No 56
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=94.08 E-value=0.19 Score=43.00 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=54.4
Q ss_pred CcccEEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHH
Q 008337 98 DELIIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVD 176 (569)
Q Consensus 98 de~~f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVd 176 (569)
+......+|.|..-- ++..+.+ |.++.+|+++|||.|.+...- ++ ....++ .+.|.|.. +.|+
T Consensus 11 ~~ap~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~~tga~I~I~~~~--~~-~~~~~~--~V~I~G~~---------~~v~ 74 (104)
T 1we8_A 11 ENTPVFEQLSVPQRS--VGRIIGRGGETIRSICKASGAKITCDKES--EG-TLLLSR--LIKISGTQ---------KEVA 74 (104)
T ss_dssp SSCEEEEEEEEETTT--HHHHHTTTSHHHHHHHHHHCCEEEECCSS--CC-SSSSEE--EEEEEEEH---------HHHH
T ss_pred CCCCEEEEEEEChhh--eeeeECCCCHHHHHHHHHHCCEEEEecCC--CC-CCCCcc--eEEEEcCH---------HHHH
Confidence 334466788886544 8889987 999999999999999874321 00 011233 46788975 3689
Q ss_pred HHHHHHHHHHHcC
Q 008337 177 HAAAMVEEMLKQG 189 (569)
Q Consensus 177 rA~alIeEIIKE~ 189 (569)
+|+.+|.+++.++
T Consensus 75 ~A~~~I~~~i~e~ 87 (104)
T 1we8_A 75 AAKHLILEKVSED 87 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999775
No 57
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=94.05 E-value=0.1 Score=43.38 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=52.3
Q ss_pred cEEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 101 IIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 101 ~f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
.+..+|.|..- .++..+.| |.++++|+++|||.|.+... .....+ -.+.|.|.. +.|++|+
T Consensus 13 ~~~~~i~Ip~~--~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~--~~v~I~G~~---------e~v~~A~ 74 (89)
T 1j5k_A 13 IITTQVTIPKD--LAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSED--RIITITGTQ---------DQIQNAQ 74 (89)
T ss_dssp EEEEEEEEEHH--HHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSE--EEEEEEEEH---------HHHHHHH
T ss_pred eEEEEEEEChh--hcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCc--cEEEEEcCH---------HHHHHHH
Confidence 36677777543 37888886 89999999999999987531 111223 356788863 4799999
Q ss_pred HHHHHHHHcC
Q 008337 180 AMVEEMLKQG 189 (569)
Q Consensus 180 alIeEIIKE~ 189 (569)
.+|++++++.
T Consensus 75 ~~I~~~i~e~ 84 (89)
T 1j5k_A 75 YLLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 58
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=94.04 E-value=0.13 Score=44.56 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=50.6
Q ss_pred EEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHH
Q 008337 104 REIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMV 182 (569)
Q Consensus 104 aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alI 182 (569)
.+|.|..-- ++..+-| |+++++|+++|||.|.+.- .. +...-..+.|+|.. +.+++|+.+|
T Consensus 13 ~~i~Ip~~~--iG~IIGkgG~~Ik~I~~~TGakI~I~~-----~~--~~~~er~V~I~G~~---------e~v~~A~~~I 74 (106)
T 2hh3_A 13 IDVPVPRHS--VGVVIGRSGEMIKKIQNDAGVRIQFKQ-----DD--GTGPEKIAHIMGPP---------DRCEHAARII 74 (106)
T ss_dssp EEEEEETTT--HHHHHTTTTHHHHHHHHHHTCEEEECS-----SC--SSSSEEEEEEESSH---------HHHHHHHHHH
T ss_pred EEEEECHHH--cCccCCCCcHHHHHHHHHHCcEEEEec-----CC--CCCceeEEEEEeCH---------HHHHHHHHHH
Confidence 466775444 7888887 9999999999999998743 11 11122356788863 4899999999
Q ss_pred HHHHHcCC
Q 008337 183 EEMLKQGH 190 (569)
Q Consensus 183 eEIIKE~p 190 (569)
++++.+..
T Consensus 75 ~~ii~~~~ 82 (106)
T 2hh3_A 75 NDLLQSLR 82 (106)
T ss_dssp HHHHHHHC
T ss_pred HHHHhccc
Confidence 99998753
No 59
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.99 E-value=0.13 Score=42.82 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|.+ ..+++.+.| |+|+++|+++|||.|.+-. . ++++ .+.|+|..+ .+++|+.
T Consensus 10 ~~~~i~VP~--~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~-----~---~~~~--~v~ItG~~e---------~v~~A~~ 68 (83)
T 2dgr_A 10 TTIQVRVPY--RVVGLVVGPKGATIKRIQQRTHTYIVTPG-----R---DKEP--VFAVTGMPE---------NVDRARE 68 (83)
T ss_dssp EEEEEECCH--HHHHHHHTTTTSSHHHHHHHTTCEEECCC-----S---SSCC--EEEEEECTT---------THHHHHH
T ss_pred eEEEEEeCh--HHeeeeECCCchHHHHHHHHhCCeEEecC-----C---CCCC--eEEEEcCHH---------HHHHHHH
Confidence 667788876 568999997 9999999999999997632 1 1233 368889763 7999999
Q ss_pred HHHHHHHcC
Q 008337 181 MVEEMLKQG 189 (569)
Q Consensus 181 lIeEIIKE~ 189 (569)
+|.+++...
T Consensus 69 ~I~~~i~~r 77 (83)
T 2dgr_A 69 EIEAHITLR 77 (83)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 999987653
No 60
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.92 E-value=0.15 Score=42.84 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|..-- .|..+.+ |.++.+|+++|||.|..- +.. +.+ -.+.|.|.. ..+++|+.
T Consensus 17 ~t~~i~Ip~~~--ig~IIG~gG~~Ik~I~~etg~~I~i~-----~~~--~~~--~~V~I~G~~---------e~v~~A~~ 76 (94)
T 2cte_A 17 ASATVAIPKEH--HRFVIGKNGEKLQDLELKTATKIQIP-----RPD--DPS--NQIKITGTK---------EGIEKARH 76 (94)
T ss_dssp EEEEEECCTTT--HHHHHCSSSCHHHHHHHHTTCCCBCC-----CTT--SSC--CEEEEEECH---------HHHHHHHH
T ss_pred eEEEEEEChHH--eeeeECCCChhHHHHHHHHCCEEEeC-----CCC--CCC--CeEEEEECH---------HHHHHHHH
Confidence 67888888665 8999998 799999999999998652 211 112 256789972 58999999
Q ss_pred HHHHHHHcC
Q 008337 181 MVEEMLKQG 189 (569)
Q Consensus 181 lIeEIIKE~ 189 (569)
+|.+++.+.
T Consensus 77 ~I~~i~~~~ 85 (94)
T 2cte_A 77 EVLLISAEQ 85 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998764
No 61
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=93.85 E-value=0.13 Score=41.09 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=49.6
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
...+|.|+.-- .|..+.+ |.++.+|+++|||.|.. ++. ++..-.+.|.|.. +++++|+.
T Consensus 5 ~~~~i~I~~~~--ig~iIG~gG~~I~~I~e~tg~~I~i-----~~~----g~~~~~V~I~G~~---------~~v~~A~~ 64 (71)
T 1vig_A 5 DYVEINIDHKF--HRHLIGKSGANINRIKDQYKVSVRI-----PPD----SEKSNLIRIEGDP---------QGVQQAKR 64 (71)
T ss_dssp EEEEEEECSSH--HHHHTCSSCCHHHHHHHHTCCEEEC-----CCC----CSSSEEEEEEESS---------HHHHHHHH
T ss_pred EEEEEEECHHH--hhhhcCCCCccHHHHHHHHCCEEEE-----CCC----CCcccEEEEEcCH---------HHHHHHHH
Confidence 55677887655 8999986 99999999999999954 221 2233467899984 47999999
Q ss_pred HHHHHH
Q 008337 181 MVEEML 186 (569)
Q Consensus 181 lIeEII 186 (569)
+|.+++
T Consensus 65 ~I~~i~ 70 (71)
T 1vig_A 65 ELLELA 70 (71)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 998864
No 62
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=93.80 E-value=0.14 Score=41.19 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|.. ..++..+.+ |.++.+|+++|||.|.+-.. + ..++ .+.|.|.. ..+++|+.
T Consensus 5 ~~~~i~ip~--~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~---~~er--~v~I~G~~---------~~v~~A~~ 64 (73)
T 2axy_A 5 LTIRLLMHG--KEVGSIIGKKGESVKKMREESGARINISEG----N---CPER--IITLAGPT---------NAIFKAFA 64 (73)
T ss_dssp EEEEEEEEH--HHHHHHHCGGGHHHHHHHHHHCCEEEECSS----C---CSEE--EEEEEECH---------HHHHHHHH
T ss_pred EEEEEEECh--hHeeeEECCCCHHHHHHHHHHCCEEEEecC----C---CCcE--EEEEEeCH---------HHHHHHHH
Confidence 445566654 347788887 89999999999999977431 1 1233 46788873 48999999
Q ss_pred HHHHHHHcC
Q 008337 181 MVEEMLKQG 189 (569)
Q Consensus 181 lIeEIIKE~ 189 (569)
+|.++|.++
T Consensus 65 ~I~~~l~ed 73 (73)
T 2axy_A 65 MIIDKLEED 73 (73)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999874
No 63
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=93.19 E-value=0.29 Score=42.17 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=51.0
Q ss_pred cEEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 101 IIAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 101 ~f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
.+..+|.|+.-- .|..+.+ |.++.+|+++|||.|.. ++. ++..-.+.|.|.. ..|++|+
T Consensus 16 p~~~~i~Ip~~~--ig~IIG~gG~~Ir~I~eetg~~I~I-----~~~----g~~~~~V~I~G~~---------e~v~~A~ 75 (104)
T 2ctk_A 16 PVTIEVEVPFDL--HRYVIGQKGSGIRKMMDEFEVNIHV-----PAP----ELQSDIIAITGLA---------ANLDRAK 75 (104)
T ss_dssp CEEEEEECCHHH--HHHHHCSSSHHHHHHHHHTCCEEEC-----CCT----TTTCCEEEEEECH---------HHHHHHH
T ss_pred CEEEEEEEChHH--ccceeCCCchHHHHHHHHHCCEEEe-----cCC----CCCcceEEEEcCH---------HHHHHHH
Confidence 367778887544 8999997 99999999999999865 221 1122367899974 4789999
Q ss_pred HHHHHHHHc
Q 008337 180 AMVEEMLKQ 188 (569)
Q Consensus 180 alIeEIIKE 188 (569)
.+|.+++++
T Consensus 76 ~~I~~i~~e 84 (104)
T 2ctk_A 76 AGLLERVKE 84 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988865
No 64
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.13 E-value=0.022 Score=64.32 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=32.0
Q ss_pred eeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008337 223 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASR 302 (569)
Q Consensus 223 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~tV~eE~~~fr 302 (569)
.+|.+|||+|.++|.|+.+||++|-|-+.| .|+|++.+.+.+++|+++++.|.+. .++
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG----------------~v~Is~~~~~~~~~a~~~i~~i~~p--~~~---- 665 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIEDDG----------------TIYIGAADGPAAEAARATINGIANP--TSP---- 665 (757)
T ss_dssp -------------CTTCCCCCSCC------------------------CCCBSSHHHHCC--------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecCCc----------------eEEEecCCHHHHHHHHHHHHHhcch--hhc----
Confidence 568899999999999999999999776432 3567778888888898888887632 111
Q ss_pred cccccccccCCCchhhcccccCcCcccccCcccchhhcccccc
Q 008337 303 VSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNL 345 (569)
Q Consensus 303 ~~~~k~y~avPppq~~l~Gv~~s~~~~~~~~~~~~~~~~~~~~ 345 (569)
.....|. --+.++..+|..-.+.. ..-||.|--++
T Consensus 666 -~vG~i~~------G~V~~i~~fGaFV~l~~-g~eGLvHiSel 700 (757)
T 1e3p_A 666 -EVGERIL------GSVVKTTTFGAFVSLLP-GKDGLLHISQI 700 (757)
T ss_dssp --------------CBEEECC-CSCEECCC----CCCCC----
T ss_pred -ccccEEE------EEEEEccccEEEEEEcC-CcEEEEEhHHh
Confidence 1233443 34666777774433322 25577775544
No 65
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=93.13 E-value=0.082 Score=48.91 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=49.6
Q ss_pred CceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHhh
Q 008337 221 LNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAEC 298 (569)
Q Consensus 221 FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~tV~eE~ 298 (569)
-.+++.|+||+|+.|++||..|++.|+|.=-.| ..---|.|-|.... =.+|+.|+.+|.+--++..
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-----------~g~tEVtIfG~~~~-Q~rak~MI~sLA~~hr~~~ 129 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-----------ERRAEIWIFGPPPF-RRDVDRMLTDLAHYCRMKL 129 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-----------TSCEEEEEESCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEeccCC-----------CCcEEEEEECCHHH-HHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999982111 11245777776544 4568888888888777665
No 66
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=93.02 E-value=0.2 Score=41.29 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=48.7
Q ss_pred EEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHH
Q 008337 105 EIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 183 (569)
Q Consensus 105 EIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alIe 183 (569)
+|.|..- .++..+.+ |.++.+|++.|||.|.+... +...++..--.+.|.|.. ..++.|+.+|.
T Consensus 6 ~i~IP~~--~vG~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~g~~~r~v~I~G~~---------~~v~~A~~~I~ 70 (87)
T 1ec6_A 6 EIAVPEN--LVGAILGKGGKTLVEYQELTGARIQISKK----GEFLPGTRNRRVTITGSP---------AATQAAQYLIS 70 (87)
T ss_dssp EEEEEHH--HHHHHHCGGGHHHHHHHHHHCCEEEECCT----TCBSTTSCEEEEEEESSH---------HHHHHHHHHHH
T ss_pred EEEEChH--HcCeeECCCcHhHHHHHHHhCCEEEEccC----CCCCCCCCceEEEEEcCH---------HHHHHHHHHHH
Confidence 4444332 36777886 89999999999999977431 111123333456889963 48999999999
Q ss_pred HHHHcC
Q 008337 184 EMLKQG 189 (569)
Q Consensus 184 EIIKE~ 189 (569)
+++.+.
T Consensus 71 ~~i~~~ 76 (87)
T 1ec6_A 71 QRVTYE 76 (87)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998764
No 67
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.28 E-value=0.038 Score=62.08 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred eeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Q 008337 223 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 292 (569)
Q Consensus 223 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~LiEnLL~ 292 (569)
.++.+|||+|.+++.|..+||++|-|.+. -.++|++.+.+.+++|+++++.|+.
T Consensus 570 ki~~~ig~gGk~I~~I~~~~G~~IdI~~d----------------g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 570 KIKDVIGKGGSVIRALTEETGTTIEIEDD----------------GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HhcccccccceeeeeeehhhCceEEecCC----------------ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999977743 2467888888899999999888763
No 68
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.48 E-value=0.45 Score=40.32 Aligned_cols=68 Identities=6% Similarity=0.066 Sum_probs=51.7
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
+..+|.|+.-- .|..+.+ |.++.+|+++|||.|.. |+.. +...-.+.|.|.. +.|++|+.
T Consensus 17 vt~~i~Ip~~~--ig~IIG~gG~~Ir~I~e~tg~~I~i-----~~~g---~~~~~~V~I~G~~---------e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHRV--HARIIGARGKAIRKIMDEFKVDIRF-----PQSG---APDPNCVTVTGLP---------ENVEEAID 77 (95)
T ss_dssp CCEEEECCTTT--HHHHHCSSSCHHHHHHHHHTCEEEC-----CCTT---CSCTTEEEEESCH---------HHHHHHHH
T ss_pred EEEEEEECHHH--ccccCCCCcchHHHHHHHHCCeEEe-----cCCC---CCCCcEEEEEcCH---------HHHHHHHH
Confidence 67788888665 8999986 99999999999999976 2211 1123356788874 47899999
Q ss_pred HHHHHHHc
Q 008337 181 MVEEMLKQ 188 (569)
Q Consensus 181 lIeEIIKE 188 (569)
+|..++++
T Consensus 78 ~I~~i~~e 85 (95)
T 2ctm_A 78 HILNLEEE 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 69
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=91.18 E-value=0.7 Score=39.20 Aligned_cols=70 Identities=4% Similarity=-0.003 Sum_probs=51.8
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAA 180 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~a 180 (569)
|...|.|..-- .|..+.+ |.++.+|+++|||.|.. ++... +++..-.+.|.|.. +.+++|+.
T Consensus 17 ~~~~i~Ip~~~--ig~IIGkgG~~Ik~I~~etg~~I~i-----~~~g~-~~~~~~~V~I~G~~---------e~v~~A~~ 79 (97)
T 2ctl_A 17 FKLSVTVDPKY--HPKIIGRKGAVITQIRLEHDVNIQF-----PDKDD-GNQPQDQITITGYE---------KNTEAARD 79 (97)
T ss_dssp CEEEEECCTTT--HHHHSCSSSCHHHHHHHHHTCEEEC-----CCTTT-CSSCSSEEEEESCH---------HHHHHHHH
T ss_pred eeEEEEECHHH--hhhcCCCCchhHHHHHHHHCCEEEe-----cCCCC-CCCCccEEEEEeCH---------HHHHHHHH
Confidence 77888888755 8999997 99999999999999865 22211 11223346788862 47899999
Q ss_pred HHHHHHHc
Q 008337 181 MVEEMLKQ 188 (569)
Q Consensus 181 lIeEIIKE 188 (569)
+|..++++
T Consensus 80 ~I~~iv~e 87 (97)
T 2ctl_A 80 AILRIVGE 87 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 70
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=89.11 E-value=0.38 Score=46.04 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=51.0
Q ss_pred eeEEEecCCCCCCCceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEE----eCCHHHHHHH
Q 008337 208 STSVFLGFDADASLNIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLS----SNNPKSLEEA 283 (569)
Q Consensus 208 qeKI~Ipld~~P~FNfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Is----a~~~e~v~~A 283 (569)
+.+|.||-+ -+|.|||.+|.+++.|++++||+|.|-.+ + =-+.|. ..|+..+.+|
T Consensus 5 ~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~--------------~-~~V~i~t~~~t~dp~~i~KA 63 (191)
T 1tua_A 5 RIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTE--------------N-SMVIVEPEAEGIPPVNLMKA 63 (191)
T ss_dssp CEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETT--------------T-TEEEEEESSTTSCHHHHHHH
T ss_pred ceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcC--------------C-CeEEEEeCCCCCCHHHHHHH
Confidence 356777733 67899999999999999999999999632 1 122344 3688999999
Q ss_pred HHHHHHHHHHHH
Q 008337 284 KRLAENLLDTIS 295 (569)
Q Consensus 284 k~LiEnLL~tV~ 295 (569)
+++|..+...+.
T Consensus 64 ~dlI~ai~rgf~ 75 (191)
T 1tua_A 64 AEVVKAISLGFP 75 (191)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 999988776443
No 71
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=88.95 E-value=0.53 Score=40.10 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHh-CCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCT-GAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~T-GA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
....|.|+.- ..|..+.+ |.++.+|+++| |+.|.. |. ++...-...|.|.. ++|++|+
T Consensus 17 vt~~i~Ip~~--~i~~iIG~gGk~Ir~I~eetggv~I~i-----~~----~g~~~~~V~I~G~~---------~~v~~A~ 76 (95)
T 2ctj_A 17 AEVEVSIPAK--LHNSLIGTKGRLIRSIMEECGGVHIHF-----PV----EGSGSDTVVIRGPS---------SDVEKAK 76 (95)
T ss_dssp CCEEEECCHH--HHHHHHCSSSHHHHHHHHHHTSCEEEC-----CC----TTTTCCEEEEESCH---------HHHHHHH
T ss_pred EEEEEEECHH--HHhhhCCCCchhHHHHHHHcCCCEEEe-----CC----CCCCcceEEEEcCH---------HHHHHHH
Confidence 4566777744 37999986 79999999999 999844 32 22333467899975 4899999
Q ss_pred HHHHHHHHcC
Q 008337 180 AMVEEMLKQG 189 (569)
Q Consensus 180 alIeEIIKE~ 189 (569)
++|++++.+-
T Consensus 77 ~~I~~iv~e~ 86 (95)
T 2ctj_A 77 KQLLHLAEEK 86 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 9999999763
No 72
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=78.37 E-value=5.9 Score=33.95 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=48.9
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHH-hCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKC-TGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~-TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
++.+|+|.--= .|+++.+ |+++.+|.+. +++.| .+|. ++. .+.|+|+. ..|++|.
T Consensus 27 ~t~~i~vp~~~--h~~IIG~~G~~Ik~i~~~~~~v~I-----~fp~-----~~~--~ItI~G~~---------~~V~~a~ 83 (102)
T 2ctf_A 27 TVSSVAAPSWL--HRFIIGKKGQNLAKITQQMPKVHI-----EFTE-----GED--KITLEGPT---------EDVSVAQ 83 (102)
T ss_dssp EEEEEECCSTT--HHHHHTTTTCHHHHHHHHCSSSEE-----EECS-----SSC--EEEEEECH---------HHHHHHH
T ss_pred EEEEEEeCHHH--HhhhcCCCCccHHHHHHHcCCcEE-----EeCC-----CCC--EEEEECCH---------HHHHHHH
Confidence 67888887443 8999996 9999999995 57776 2554 222 57899985 4799999
Q ss_pred HHHHHHHHc
Q 008337 180 AMVEEMLKQ 188 (569)
Q Consensus 180 alIeEIIKE 188 (569)
.+|+.++++
T Consensus 84 ~~I~~~v~e 92 (102)
T 2ctf_A 84 EQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888875
No 73
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=75.46 E-value=1.7 Score=39.49 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred CCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc
Q 008337 147 APPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQT 198 (569)
Q Consensus 147 k~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~alIeEIIKE~p~~~pp~~~ 198 (569)
...++.+|-|....-..+++|.+.|.+..++...+|+++++..+.|.++.+|
T Consensus 70 ~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DY 121 (124)
T 4fxw_B 70 DRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADY 121 (124)
T ss_dssp SSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC-
T ss_pred cCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 4678899999988777777788888899999999999999999999988764
No 74
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=67.76 E-value=2.2 Score=36.63 Aligned_cols=62 Identities=15% Similarity=0.197 Sum_probs=46.8
Q ss_pred EEEEEEeCCCCcccchhccc-hhHHHHHHHHhCCe-EeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHH
Q 008337 102 IAREIVINDSESSVRYKLTK-RHTQEEIQKCTGAV-VITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAA 179 (569)
Q Consensus 102 f~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~-VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~ 179 (569)
|..+|.|+. ...|..+.+ |.++.+|+++||+. |..-- ++. .+.|.|.+. +++++|+
T Consensus 15 ~i~~i~I~~--dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG--~V~I~g~~~--------ea~~~A~ 72 (91)
T 2cpq_A 15 FHEEFVVRE--DLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTG--TFRIYGESA--------DAVKKAR 72 (91)
T ss_dssp EEEEEECCH--HHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTT--EEEEEESSH--------HHHHHHH
T ss_pred eEEEEEECh--HHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCC--EEEEEECCH--------HHHHHHH
Confidence 778888874 347999986 99999999999997 87631 122 356888764 5889998
Q ss_pred HHHHHH
Q 008337 180 AMVEEM 185 (569)
Q Consensus 180 alIeEI 185 (569)
++|+.+
T Consensus 73 ~~I~~i 78 (91)
T 2cpq_A 73 GFLEFV 78 (91)
T ss_dssp HHHSCC
T ss_pred HHHHhh
Confidence 888764
No 75
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=46.31 E-value=8.5 Score=42.76 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=43.5
Q ss_pred EEEEEeCCCCcccchhccc-hhHHHHHHHHhCCeEeeeccccCCCCCCCCCCCeEEEEEeccchhhHHHHHHHHHHHHHH
Q 008337 103 AREIVINDSESSVRYKLTK-RHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAM 181 (569)
Q Consensus 103 ~aEIEINDlPq~~R~~LTK-g~Tq~eIqe~TGA~VtTRGrY~PPgk~~~gEpPLYL~Ieg~te~kdTaERi~aVdrA~al 181 (569)
...|.|+ |.+.|-.+.+ |.++++|+++||+.|.+- ++- ...|.+.+. .++++|+++
T Consensus 568 ~~~~~I~--~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G--~V~I~~~~~--------~~~~~A~~~ 624 (630)
T 3u1k_A 568 VETVQVP--LSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEE--TFSVFAPTP--------SAMHEARDF 624 (630)
T ss_dssp EEEEECC--HHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSS--EEEEEESSH--------HHHHHHHHH
T ss_pred EEEEEeC--hhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCc--EEEEEeCCH--------HHHHHHHHH
Confidence 3456665 3347888886 899999999999998652 121 346888763 478999999
Q ss_pred HHHHHH
Q 008337 182 VEEMLK 187 (569)
Q Consensus 182 IeEIIK 187 (569)
|+.|++
T Consensus 625 I~~i~~ 630 (630)
T 3u1k_A 625 ITEICK 630 (630)
T ss_dssp TTC---
T ss_pred HHHHhC
Confidence 988763
No 76
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=38.41 E-value=26 Score=33.85 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=37.6
Q ss_pred eeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHH
Q 008337 223 IAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKR 285 (569)
Q Consensus 223 fvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~Ak~ 285 (569)
.+.+++|++|+.++.|.+.++|+|.| |+ .-.++|.+.+.+....+.+
T Consensus 158 ~~~rl~~~~~~~l~~l~~~~~~~i~v-G~---------------NG~IWi~~~~~~~~~~~~~ 204 (235)
T 2z0s_A 158 KVPRVIGRKMSMLKTLEEKTECKIFV-AR---------------NGRIHLECPNEDLEAIAVM 204 (235)
T ss_dssp GSGGGTCGGGHHHHHHHHHHCCEEEE-ET---------------TTEEEEECSCHHHHHHHHH
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEE-eC---------------CCEEEEecCCHHHHHHHHH
Confidence 67789999999999999999999988 44 1479999999876554433
No 77
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=31.17 E-value=9.9 Score=34.93 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.5
Q ss_pred eEEEeCCCchhHHHHHHhhCcEEEEeec
Q 008337 224 AARIRGPNDQYINHIMNETGATVLLRGR 251 (569)
Q Consensus 224 vgrIIGPrGstlK~Iq~ETGaKI~IRGR 251 (569)
+|..||++|+.++.|++|.|-||-|---
T Consensus 47 vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 47 AGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp HHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred ccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 8999999999999999999999977643
No 78
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=30.16 E-value=1.7e+02 Score=25.16 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=31.3
Q ss_pred hhHHHHHHhh-CcEEEEeeccCCCCCCCCCCCCCCC-cEEEEEeCCHHHHHHHHHHHHHHHHHHHHh
Q 008337 233 QYINHIMNET-GATVLLRGRGSGNSEGLQGEEVHQP-LHLFLSSNNPKSLEEAKRLAENLLDTISAE 297 (569)
Q Consensus 233 stlK~Iq~ET-GaKI~IRGRGSg~~E~~~g~EsdEP-LHV~Isa~~~e~v~~Ak~LiEnLL~tV~eE 297 (569)
..+.-|+-+. +.+|.||--| .|| ++|++++.+.+ .|.++++.+.+.|.+.
T Consensus 45 ~~idgl~~~~~~gwvlvRpSG------------TEP~irvy~Ea~~~~---~~~~~~~~~~~~i~~~ 96 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSG------------TEDIVRVYAEANSQE---SADRLAYEVSLLVFQL 96 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSS------------SSSSEEEEEEESSHH---HHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCC------------CccEEEEEEEECCHH---HHHHHHHHHHHHHHHH
Confidence 3445555543 4578888442 255 99999999875 4555566666555544
No 79
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=26.54 E-value=30 Score=33.42 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=32.4
Q ss_pred ceeEEEeCCCchhHHHHHHhhCcEEEEeeccCCCCCCCCCCCCCCCcEEEEEeCCH
Q 008337 222 NIAARIRGPNDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNP 277 (569)
Q Consensus 222 NfvgrIIGPrGstlK~Iq~ETGaKI~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~ 277 (569)
+.+.+++|+++..++.|.+.++|.|.| |. .-.++|.+.+.
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~---------------NG~IWi~~~~~ 184 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ---------------NGLIWVNGDRR 184 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT---------------TSEEEEESCHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC---------------CcEEEEeCCch
Confidence 367789999999999999999999988 22 14688997655
No 80
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=25.87 E-value=1.2e+02 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=26.8
Q ss_pred HHHHHhhCcEE--EEeeccCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHH
Q 008337 236 NHIMNETGATV--LLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEA 283 (569)
Q Consensus 236 K~Iq~ETGaKI--~IRGRGSg~~E~~~g~EsdEPLHV~Isa~~~e~v~~A 283 (569)
.++.+|.+-.| +|-|.|||. |-+...|+|-+.+++|
T Consensus 63 erl~~efni~v~y~imgsgsgv------------m~i~f~gddlea~eka 100 (170)
T 4hhu_A 63 ERLKAEFNINVQYQIMGSGSGV------------MVIVFEGDDLEALEKA 100 (170)
T ss_dssp HHHHHHHTCEEEEEEECTTCCE------------EEEEEECSCHHHHHHH
T ss_pred HHHHHhcceEEEEEEEeCCceE------------EEEEEecCcHHHHHHH
Confidence 35566777666 677888885 5677888888888887
No 81
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=23.95 E-value=41 Score=27.11 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=11.3
Q ss_pred ccCCCCCcCCChHHHH
Q 008337 397 SGYEGIYPQATPLQQV 412 (569)
Q Consensus 397 ~gy~~iypqatplqqv 412 (569)
-|||+|+|+ |+.-++
T Consensus 43 vGyGdi~P~-t~~~r~ 57 (82)
T 3ldc_A 43 VGYGDYSPH-TPLGMY 57 (82)
T ss_dssp CCCCSSCCC-SHHHHH
T ss_pred cCCCCCCCC-CccHHH
Confidence 599999998 555544
No 82
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=23.87 E-value=88 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCCeEE-EEEeccchhhHHHHHHHHHHHHHHHHHHHHc
Q 008337 152 EKPLYL-HISAGAHLKETAERILAVDHAAAMVEEMLKQ 188 (569)
Q Consensus 152 EpPLYL-~Ieg~te~kdTaERi~aVdrA~alIeEIIKE 188 (569)
-+|+|- .+++. .++++| +++++|++.|.+.++.
T Consensus 50 gaP~Y~i~~~~~--D~k~ge--~~L~~ai~~i~~~i~~ 83 (93)
T 2qn6_B 50 GAPRYRVDVVGT--NPKEAS--EALNQIISNLIKIGKE 83 (93)
T ss_dssp STTEEEEEEEES--CHHHHH--HHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEec--CHHHHH--HHHHHHHHHHHHHHHH
Confidence 366773 33443 377777 6899999999998876
No 83
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=21.59 E-value=20 Score=35.11 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.8
Q ss_pred cceeEEEecCCCCCCCceeEEEeCCCchhHHHH--------HHhhCcEEEEe
Q 008337 206 AMSTSVFLGFDADASLNIAARIRGPNDQYINHI--------MNETGATVLLR 249 (569)
Q Consensus 206 ~~qeKI~Ipld~~P~FNfvgrIIGPrGstlK~I--------q~ETGaKI~IR 249 (569)
.....|||.-+ .-.+.|||.+|..||+| |+..||||.|.
T Consensus 239 ~i~a~i~ve~~-----~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRE-----NLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSG-----GGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccC-----CcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 44555666533 24567999999999987 55678988875
Done!