BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008338
(569 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1
Length = 557
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 145/219 (66%), Gaps = 12/219 (5%)
Query: 5 KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
KK Y K+ +++ E+ E + KYRDRAKERR+ N DYE TEL ++ AV P
Sbjct: 77 KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135
Query: 61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
D A+ ++ I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI K ++ K +
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195
Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
+K+D+ ++ F+T + ++VY+ + K ++ + NE+FLPGRM+++ + + Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254
Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
TL RSKADCP + T++ + V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 443 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 502
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 503 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 549
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=2
Length = 557
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 145/219 (66%), Gaps = 12/219 (5%)
Query: 5 KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
KK Y K+ +++ E+ E + KYRDRAKERR+ N DYE TEL ++ AV P
Sbjct: 77 KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135
Query: 61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
D A+ ++ I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI K ++ K +
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195
Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
+K+D+ ++ F+T + ++VY+ + K ++ + NE+FLPGRM+++ + + Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKSYER-NELFLPGRMAYVVDLDDEYADTDIPT 254
Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
TL RSKADCP + T++ + V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 443 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 502
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 503 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 549
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RK+ME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKRMEAD 548
>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1
Length = 557
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 144/219 (65%), Gaps = 12/219 (5%)
Query: 5 KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
KK Y K+ +++ E+ E + KYRDRAKERR+ N DYE TEL ++ AV P
Sbjct: 77 KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135
Query: 61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
D A+ ++ I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI K ++ K +
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195
Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
+K+D+ ++ F+T + ++VY+ + K + + NE+FLPGRM+++ + + Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254
Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
TL RSKADCP + T++ + V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 443 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 502
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 503 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 549
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3
Length = 557
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 144/219 (65%), Gaps = 12/219 (5%)
Query: 5 KKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTEL----GSFHAVAPPGNV 60
KK Y K+ +++ E+ E + KYRDRAKERR+ N DYE TEL ++ AV P
Sbjct: 77 KKSYYAKLRQQEIERERELAE-KYRDRAKERRDGVNKDYEETELISTTANYRAVGPTAEA 135
Query: 61 DLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRT 119
D A+ ++ I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI K ++ K +
Sbjct: 136 DKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKE 195
Query: 120 SKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPT 174
+K+D+ ++ F+T + ++VY+ + K + + NE+FLPGRM+++ + + Y++ DIPT
Sbjct: 196 TKKDEDPENKIEFKTRLGRNVYRMLFKSKAYER-NELFLPGRMAYVVDLDDEYADTDIPT 254
Query: 175 TLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGS 213
TL RSKADCP + T++ + V+ ++ +I++YLR G+
Sbjct: 255 TLIRSKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 7/111 (6%)
Query: 443 ISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKE 502
+S SY+ECYP + VDSD+E D SKMD G + KG L RWDF+T+EE++ Y KE
Sbjct: 441 MSNSYAECYPATM--DDMAVDSDEEVDYSKMDQGNK-KGPLGRWDFDTQEEYSEYMNNKE 497
Query: 503 AMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 549
A+PKAAFQ+G+KM +GRKTR+ N +L + KI+ I+ RKKME D
Sbjct: 498 ALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
>sp|Q9Y7Z6|YP02_SCHPO Meiotic chromosome segregation protein C1539.02
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1539.02 PE=4 SV=1
Length = 386
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 73 EKSKYLGGDVEHTHLVKGLDYALLNKVRS 101
EKSK LGGD+ THLV+GLD LL KVRS
Sbjct: 108 EKSKELGGDLNTTHLVRGLDRKLLEKVRS 136
>sp|B2A6B7|OBG_NATTJ GTPase obg OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=obg PE=3 SV=1
Length = 452
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 379 AYPEQYLQPDMQTYEMQAG--LNMPQDPRFMTQEEKDRGLGSVFKRDDQR---LLQLREK 433
+Y L P++ E++ G M P + + RGLG F R +R L+ + +
Sbjct: 187 SYHFTTLNPNLGVVELEEGSRFVMADIPGLIEGAHQGRGLGDQFLRHIERTKMLIHVIDI 246
Query: 434 DARE-KDPNFISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRW 486
+ E +DP E+ +E GY N ++D +KMD+G +A+ L R
Sbjct: 247 ASIEGRDPVLDIETINEELKGY---NSRVMDKPQVIAANKMDLGDQAEENLQRL 297
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 32.7 bits (73), Expect = 7.9, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 382 EQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPN 441
E L D + +++ L++ + M +EE D+ L + D R+ ++ EK+ E N
Sbjct: 675 ENILNNDEEVCDLKRKLSLKESEMKMMKEEHDKKLAELKDDCDVRIREMNEKN--EDKIN 732
Query: 442 FISESYSECYPGYQEYNREIVDSDDEDDLSKMD-MGGRAKGRLHRWDFETEEEWATYNEQ 500
+ E Y + +E N + +++ E + K++ + + +++ E E + T NEQ
Sbjct: 733 MLKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQ 792
Query: 501 KE 502
E
Sbjct: 793 NE 794
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,965,389
Number of Sequences: 539616
Number of extensions: 11554409
Number of successful extensions: 44690
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 43925
Number of HSP's gapped (non-prelim): 811
length of query: 569
length of database: 191,569,459
effective HSP length: 123
effective length of query: 446
effective length of database: 125,196,691
effective search space: 55837724186
effective search space used: 55837724186
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)