Query 008338
Match_columns 569
No_of_seqs 140 out of 168
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 22:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2498 IK cytokine down-regul 100.0 2E-117 5E-122 927.6 19.8 451 3-557 65-539 (544)
2 PF07808 RED_N: RED-like prote 100.0 1.3E-62 2.8E-67 484.9 11.2 218 4-223 1-238 (238)
3 PF07807 RED_C: RED-like prote 100.0 1.8E-58 3.9E-63 410.4 8.7 107 447-554 1-110 (118)
4 KOG2498 IK cytokine down-regul 99.9 2.5E-23 5.4E-28 220.3 7.9 303 18-339 13-319 (544)
5 COG4712 Uncharacterized protei 36.8 16 0.00035 37.2 1.0 32 483-514 81-113 (234)
6 KOG0573 Asparagine synthase [A 17.0 50 0.0011 37.4 0.4 65 443-516 433-501 (520)
7 PF12907 zf-met2: Zinc-binding 14.5 1E+02 0.0022 23.9 1.4 23 428-454 18-40 (40)
8 PF07845 DUF1636: Protein of u 12.4 98 0.0021 28.7 0.9 27 150-176 57-86 (116)
9 PF08653 DASH_Dam1: DASH compl 11.9 76 0.0016 26.4 0.0 12 505-516 37-48 (58)
10 PF05422 SIN1: Stress-activate 9.6 1E+02 0.0022 35.3 0.0 11 445-455 60-70 (523)
No 1
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-117 Score=927.58 Aligned_cols=451 Identities=47% Similarity=0.732 Sum_probs=389.2
Q ss_pred ccchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccc---cccccCCCCCcchHHHHHhhhhhhhhhhcC
Q 008338 3 SGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELG---SFHAVAPPGNVDLRLADAQKLSIEKSKYLG 79 (569)
Q Consensus 3 ~~kk~~~~kl~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~---~~~a~~~~~~~d~~~~e~~~~~ieesk~~g 79 (569)
.++|+||+++++++.+++.| .+.+|||||+|||+|+|.||..+++. ++.+|.+....+...++.|+|+|++|+|||
T Consensus 65 e~~kal~~~~k~~h~~k~de-a~lkyRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~I~eSKfLG 143 (544)
T KOG2498|consen 65 EKKKALYGKLKKQHIEKEDE-AALKYRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQLIQESKFLG 143 (544)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHHHHHhhhcC
Confidence 47899999999999999666 46779999999999999999987643 589999988888888999999999999999
Q ss_pred CCccccccccchhHHHHHHHhhhhccCCCCCCCCCCCc-----cccccchhhhHhhH-----------HHHhhHhhhhcc
Q 008338 80 GDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKS-----RTSKEDQQLSFRTA-----------MAKSVYQWIVKP 143 (569)
Q Consensus 80 gd~~~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~~-----~~~k~d~d~~F~t~-----------~gr~Vy~~i~k~ 143 (569)
|||+||||||||||+||++||.+|.....++++..+.. .+......++|.++ |+|+||..||++
T Consensus 144 GDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~~~~~r~~~~~l~~n 223 (544)
T KOG2498|consen 144 GDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLKKKLGRNVYRVLFKN 223 (544)
T ss_pred CccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhhhhhcchhhhHhhhc
Confidence 99999999999999999999999998876655542221 11112234566555 899999999998
Q ss_pred cccccccccCCCCceEEEEecCCCCC-CCcchhhhhcccCCCC-CccccccccchhHHHHHHHHHHHHhcCCCcch-hhh
Q 008338 144 QTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKV-LKK 220 (569)
Q Consensus 144 k~~~k~ne~FlPGRMaYvfdLe~e~~-~DIPTTL~RSKaDcp~-~ee~~~~~~~~~vi~Kl~kImSylR~G~~gK~-~KK 220 (569)
+ ...+|++|+||||+||++|+++.. .+|||||.||++|||. +++..++++|++||.+|.+|+||||.|.+.|+ ++|
T Consensus 224 ~-~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~~~k 302 (544)
T KOG2498|consen 224 K-EDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKPLKK 302 (544)
T ss_pred c-ccccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCcccc
Confidence 6 478999999999999999999977 9999999999999999 78889999999999999999999999997776 666
Q ss_pred hhhhhccccCCcccccccccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCcccccccCCCcCCCCCCCcccCCCcc
Q 008338 221 KKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 300 (569)
Q Consensus 221 kkkerd~~~~Gr~~~~~~d~~~~~k~~k~~g~~~~~~~~~~~lp~~~~~p~~~~~~~~~k~~~~~~~~~dddIF~d~G~D 300 (569)
|.+.+ .. . .+ +...+.+||.++| |
T Consensus 303 rDk~k-~~---------------------------------~----~~-----------------P~~~~~~iy~~~g-~ 326 (544)
T KOG2498|consen 303 RDKPK-LY---------------------------------F----DK-----------------PVEGEKVIYEDEG-D 326 (544)
T ss_pred ccccc-cc---------------------------------c----cC-----------------ccccccccccccc-c
Confidence 65553 11 0 00 1245889998777 9
Q ss_pred ccCCCCCCCCCCCccccccCcccccccCCCCcCCCCCCCCCCCCccccccCcchHHHHHHhhcCCcccchhhHHHhhhcc
Q 008338 301 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAY 380 (569)
Q Consensus 301 Y~vP~~~~~~s~~sed~~~s~~~~~r~sYF~~p~~~p~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 380 (569)
| ||....+ .+.|+... |++++.+++..++..+|+.|+++ |
T Consensus 327 Y-~P~~~s~----------------------------------~~~~~~ks-~~a~qdrg~d~~~d~e~~~~rd~----~ 366 (544)
T KOG2498|consen 327 Y-VPSTPSA----------------------------------GSRDQGKS-YGAMQDRGRDRGRDRERQRYRDA----N 366 (544)
T ss_pred c-cCCCCCC----------------------------------Cccccccc-cchhhhcccCCCCcchhhhhhhh----h
Confidence 9 8853111 12344433 78888889999999999999986 6
Q ss_pred ccccccchhhhhhhhhcCCCCCCCccccHHHHhhccCCcccchHHHHHHHHHhhhhccCCCCCCCccccccCChhhhhhc
Q 008338 381 PEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNRE 460 (569)
Q Consensus 381 ~~q~~~~~~~~~~~~~~~~~~~~p~~~~q~~~~~gl~s~f~rdd~~~~~~re~~~rekdp~f~~dsYAECYPG~~e~~~~ 460 (569)
.++|+++++.+|....- ..+|..|+++++++|++++|.+++|+ |+++-.++++||-|+|+||+|||||++|||++
T Consensus 367 r~r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~ECYPgl~em~he 441 (544)
T KOG2498|consen 367 RDRYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYAECYPGLQEMNHE 441 (544)
T ss_pred hhhhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchhhhccchhhhccc
Confidence 67889888888876542 46799999999999999999999988 88999999999999999999999999999999
Q ss_pred ccCCCcccccccccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhcccccccccccccc--hhhHhHHHHHHHH
Q 008338 461 IVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQN--KDQKLTNELHKIN 538 (569)
Q Consensus 461 i~DSDDE~D~sKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~KEAlPKAAFQyGVKm~DGRKTRK~n--~d~kLdre~~KI~ 538 (569)
|||||||+||||||||| |||+||||||||||||++||++||||||||||||||||||||||||+ .+|+|||||||||
T Consensus 442 i~~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~~~~Ldre~~~In 520 (544)
T KOG2498|consen 442 IVDSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRNDKAELDRELHKIN 520 (544)
T ss_pred ccccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccchHHHHHHHHHHHH
Confidence 99999999999999999 79999999999999999999999999999999999999999999984 7899999999999
Q ss_pred HHHHhhhcccCCCCCCCCc
Q 008338 539 KILARKKMEKDTNGEGGHY 557 (569)
Q Consensus 539 ~Il~krK~~~~~~~~~~~~ 557 (569)
+||.|||++++||++|+.|
T Consensus 521 kIi~krK~~~~ggggg~e~ 539 (544)
T KOG2498|consen 521 KIITKRKMEKDGGGGGAEY 539 (544)
T ss_pred HHHHHhhccccCCCCcccc
Confidence 9999999999999888433
No 2
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=100.00 E-value=1.3e-62 Score=484.92 Aligned_cols=218 Identities=46% Similarity=0.807 Sum_probs=193.0
Q ss_pred cchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCcc
Q 008338 4 GKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVE 83 (569)
Q Consensus 4 ~kk~~~~kl~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~ 83 (569)
|||+|++++++++..+..+ ++++|||||+|||+|.++||..+++..|+++.+.+.++..+++.++++|++|+|||||++
T Consensus 1 Kkk~~~~~~~~~~~~~~~~-~~~~YrDRA~eRR~~~~~d~~~~~~~~~~a~~~~~~~~~~~~e~~~~~i~esk~lGGD~~ 79 (238)
T PF07808_consen 1 KKKKKYKKLKKQEEPKGKK-LAPGYRDRAKERREGENDDYEEAELSALRALEPDVKLDQETAERRRQLIEESKYLGGDLE 79 (238)
T ss_pred CCchhhhhHHhhhcccccc-cccchhhHHHHHHcccCcchhhhHHHHHHHhhhhcccchhhHHHHHHHHHHHhhccCCcc
Confidence 7899999999999998887 699999999999999999999988888999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHhhhhccCCCCCCCCCCC---c--------------cccccchhhhHhhHHHHhhHhhh--hccc
Q 008338 84 HTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK---S--------------RTSKEDQQLSFRTAMAKSVYQWI--VKPQ 144 (569)
Q Consensus 84 ~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~---~--------------~~~k~d~d~~F~t~~gr~Vy~~i--~k~k 144 (569)
||||||||||+||+|||++|..+..++++..+. + ........+.|.|.++++||+++ ++++
T Consensus 80 ~THLVKGLD~~LL~kvR~ei~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~I~~~~~~~~~~ 159 (238)
T PF07808_consen 80 HTHLVKGLDFALLEKVRAEIAKKEKEEEEEEEKVEEEEEQELDEEEEELEEKEKESEEEIEFKTKLARNIFKTLFQFKSK 159 (238)
T ss_pred ccchhhhhcHHHHHHHHHHHhcccccchhHHHhhhhhhhhhcchhhhhhhhhhcccccchhHhhHHHHHHHHHHHhcccc
Confidence 999999999999999999998876554431100 0 01123457999999999999999 4554
Q ss_pred ccccccccCCCCceEEEEecCCCC-CCCcchhhhhcccCCCCCccccccccchhHHHHHHHHHHHHhcCCCcchhhhhhh
Q 008338 145 TVMKTNEMFLPGRMSFIFNTEGGY-SNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 223 (569)
Q Consensus 145 ~~~k~ne~FlPGRMaYvfdLe~e~-~~DIPTTL~RSKaDcp~~ee~~~~~~~~~vi~Kl~kImSylR~G~~gK~~KKkkk 223 (569)
. ..+|++|+||||||||||++++ .+||||||+|||+|||.+++++++++|++||+||+|||||||+|+++|++|||++
T Consensus 160 ~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsylr~g~~~kk~KKk~k 238 (238)
T PF07808_consen 160 K-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSYLRQGSRHKKNKKKKK 238 (238)
T ss_pred c-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHHHhcccchhhhhccCC
Confidence 4 5679999999999999999998 5999999999999999999999999999999999999999999999998888754
No 3
>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].
Probab=100.00 E-value=1.8e-58 Score=410.42 Aligned_cols=107 Identities=68% Similarity=1.103 Sum_probs=101.6
Q ss_pred cccccCChhhhhhcccCCCcccccccccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhccccccccccccc--
Q 008338 447 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ-- 524 (569)
Q Consensus 447 YAECYPG~~e~~~~i~DSDDE~D~sKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~KEAlPKAAFQyGVKm~DGRKTRK~-- 524 (569)
|||||||++|||++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+
T Consensus 1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~ 79 (118)
T PF07807_consen 1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE 79 (118)
T ss_pred CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence 9999999999999999999999999999999 5999999999999999999999999999999999999999999996
Q ss_pred -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 008338 525 -NKDQKLTNELHKINKILARKKMEKDTNGEG 554 (569)
Q Consensus 525 -n~d~kLdre~~KI~~Il~krK~~~~~~~~~ 554 (569)
+++++|||||++|++||++||++++++..+
T Consensus 80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~ 110 (118)
T PF07807_consen 80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG 110 (118)
T ss_pred hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence 467889999999999999999888766544
No 4
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=99.88 E-value=2.5e-23 Score=220.33 Aligned_cols=303 Identities=25% Similarity=0.250 Sum_probs=246.5
Q ss_pred CCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCccccccccchhHHHHH
Q 008338 18 EKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLN 97 (569)
Q Consensus 18 ~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~~t~lvkgld~~ll~ 97 (569)
+++.+..-.+|+++++++|. .|++|+....++++..++.+-.+......+ +++.+++|+|++.++|+|| ||+++|.
T Consensus 13 ~kL~ndDFRKLL~tpra~~p-a~~~~a~p~~ss~~~~~p~~~~~~~~~~Ar--~~e~~kal~~~~k~~h~~k-~dea~lk 88 (544)
T KOG2498|consen 13 SKLTNDDFRKLLATPRAARP-ANPTSAPPSKSSFHHEMPREYKEDEDKAAR--SREKKKALYGKLKKQHIEK-EDEAALK 88 (544)
T ss_pred hhcccchhHHHhcCcccCCC-CCcccCCcccCcccccCChhhhccccchhh--hhhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 44555556899999999998 689999988889999998877766554444 6788999999999999999 9999998
Q ss_pred HHhhhhccCCCCCCCCCCCccccccchhhhHhhHHHHhhHhhhhcccccccccccCCCCceEEEEecCCCCCCCcchhhh
Q 008338 98 KVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLH 177 (569)
Q Consensus 98 ~~r~~~~~~~~~ede~~~~~~~~k~d~d~~F~t~~gr~Vy~~i~k~k~~~k~ne~FlPGRMaYvfdLe~e~~~DIPTTL~ 177 (569)
+|.++.......+...+....+.+.+.+.|.+.+.+.+++++.+.+. +..+ +||+|+|.++..+..-....|++++.
T Consensus 89 -yRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~-I~eS-KfLGGDm~hTHLVkGLD~~LL~KVRs 165 (544)
T KOG2498|consen 89 -YRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQL-IQES-KFLGGDMEHTHLVKGLDYALLQKVRS 165 (544)
T ss_pred -HHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHH-HHHh-hhcCCccceeeeecchhHHHHHHHHH
Confidence 77777666554333322333456778899999999999999998875 3344 99999999999999888899999999
Q ss_pred hcccCCCCCccccccccch--hHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccccccccccccCCCCCCCCCCC
Q 008338 178 RSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPN 255 (569)
Q Consensus 178 RSKaDcp~~ee~~~~~~~~--~vi~Kl~kImSylR~G~~gK~~KKkkkerd~~~~Gr~~~~~~d~~~~~k~~k~~g~~~~ 255 (569)
++.+.|+..++.++..+++ ++.+.+.+|+++||+|..++.++ ++..++.. .+++-++++++..-......+..
T Consensus 166 e~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~-~~~~r~~~----~~l~~n~~~~~n~Lf~~GrmaYV 240 (544)
T KOG2498|consen 166 EIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLK-KKLGRNVY----RVLFKNKEDERNELFAPGRMAYV 240 (544)
T ss_pred HhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhh-hhhcchhh----hHhhhccccccccccCCCCccee
Confidence 9999999999988999999 99999999999999999999999 56676533 56677888888877777778888
Q ss_pred CCcccccCCCCCCC-CCCCCcc-cccccCCCcCCCCCCCcccCCCccccCCCCCCCCCCCccccccCcccccccCCCCcC
Q 008338 256 GKTEKEILPPPPPP-PKKNHVD-SREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSES 333 (569)
Q Consensus 256 ~~~~~~~lp~~~~~-p~~~~~~-~~~k~~~~~~~~~dddIF~d~G~DY~vP~~~~~~s~~sed~~~s~~~~~r~sYF~~p 333 (569)
...+.+++|++.|. +.-+..+ .+..+.+++....|+.||...+++|.++..+..+++ .+.|++.+ +||..|
T Consensus 241 viLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P 313 (544)
T KOG2498|consen 241 VILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKP 313 (544)
T ss_pred eeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCc
Confidence 99999999766664 4455556 887888888999999999999999989988777764 34556666 888887
Q ss_pred CCCCCC
Q 008338 334 VYGPVP 339 (569)
Q Consensus 334 ~~~p~p 339 (569)
+++--.
T Consensus 314 ~~~~~~ 319 (544)
T KOG2498|consen 314 VEGEKV 319 (544)
T ss_pred cccccc
Confidence 766443
No 5
>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.83 E-value=16 Score=37.16 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=25.8
Q ss_pred cccccCcCHHHHHHhhHhh-hhchhhHHhhccc
Q 008338 483 LHRWDFETEEEWATYNEQK-EAMPKAAFQFGVK 514 (569)
Q Consensus 483 ~~RWDFdTeEEy~~Ym~~K-EAlPKAAFQyGVK 514 (569)
|+|||.-++-+-+.|..+= -+|-.|||||||=
T Consensus 81 VTk~D~ge~~~~ea~Kg~aSdsmKRaavqfGIG 113 (234)
T COG4712 81 VTKQDVGEESNTEAEKGQASDSMKRAAVQFGIG 113 (234)
T ss_pred eeeccccccchhHHHhcccchHHHHHHhhhccc
Confidence 4789988888877777653 5789999999995
No 6
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=17.03 E-value=50 Score=37.44 Aligned_cols=65 Identities=32% Similarity=0.296 Sum_probs=40.4
Q ss_pred CCCccccc-cCChhhhhhcccCCCcccccccccCCCCCCC-CcccccCcCHHHHHHhhHhhhhc--hhhHHhhccccc
Q 008338 443 ISESYSEC-YPGYQEYNREIVDSDDEDDLSKMDMGGRAKG-RLHRWDFETEEEWATYNEQKEAM--PKAAFQFGVKMQ 516 (569)
Q Consensus 443 ~~dsYAEC-YPG~~e~~~~i~DSDDE~D~sKMD~G~~~KG-~~~RWDFdTeEEy~~Ym~~KEAl--PKAAFQyGVKm~ 516 (569)
++++=-|| ||=+.|+. +.=|-...=+.||++|-+. | ++ ---|+..|..-.-+- ||-|.|||-||+
T Consensus 433 iad~Gke~R~PFLde~v--V~~~~~l~~~~k~~l~l~G-G~Kl------llRe~~~~lGl~~~s~~pKrAmQFGSr~A 501 (520)
T KOG0573|consen 433 IADSGKEVRSPFLDENV--VKLSNALPVSVKMMLGLRG-GEKL------LLREAGRRLGLPSASTEPKRAMQFGSRMA 501 (520)
T ss_pred hhccCceEeccchHHHH--HHHHHhcchhHHhhhcccc-hhhH------HHHHHHHHhCCCcccccchHHHHhhhhhh
Confidence 56777787 56554321 1122233345689988642 3 11 123677777766654 999999999998
No 7
>PF12907 zf-met2: Zinc-binding
Probab=14.47 E-value=1e+02 Score=23.94 Aligned_cols=23 Identities=35% Similarity=0.858 Sum_probs=14.1
Q ss_pred HHHHHhhhhccCCCCCCCccccccCCh
Q 008338 428 LQLREKDAREKDPNFISESYSECYPGY 454 (569)
Q Consensus 428 ~~~re~~~rekdp~f~~dsYAECYPG~ 454 (569)
.+|+++.+. |-|- ..++||+|++
T Consensus 18 ~~L~eH~en-KHpK---~~~~~CFP~l 40 (40)
T PF12907_consen 18 PQLKEHAEN-KHPK---NTFEECFPNL 40 (40)
T ss_pred HHHHHHHHc-cCCC---CCHHHcCCCC
Confidence 356665542 2332 5699999985
No 8
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=12.44 E-value=98 Score=28.70 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=18.4
Q ss_pred cccC-CCCceEEEE-ecCCC-CCCCcchhh
Q 008338 150 NEMF-LPGRMSFIF-NTEGG-YSNDIPTTL 176 (569)
Q Consensus 150 ne~F-lPGRMaYvf-dLe~e-~~~DIPTTL 176 (569)
+.+| .|||.+|+| ||+++ ...+|....
T Consensus 57 tVA~~~~gK~tYlfGdl~p~~~a~~il~~a 86 (116)
T PF07845_consen 57 TVALQAPGKWTYLFGDLDPDEDAEDILAFA 86 (116)
T ss_pred EEEEEcCCCcEEEEecCCcccCHHHHHHHH
Confidence 4445 599999999 78874 236665553
No 9
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=11.93 E-value=76 Score=26.44 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.2
Q ss_pred hhhHHhhccccc
Q 008338 505 PKAAFQFGVKMQ 516 (569)
Q Consensus 505 PKAAFQyGVKm~ 516 (569)
.-|+|.||.+|+
T Consensus 37 SFasfLYGl~mn 48 (58)
T PF08653_consen 37 SFASFLYGLNMN 48 (58)
T ss_pred HHHHHHHHHHHH
Confidence 467888888875
No 10
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=9.64 E-value=1e+02 Score=35.33 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=0.0
Q ss_pred CccccccCChh
Q 008338 445 ESYSECYPGYQ 455 (569)
Q Consensus 445 dsYAECYPG~~ 455 (569)
..++|||||+-
T Consensus 60 ~~~~~~~~~~d 70 (523)
T PF05422_consen 60 RVEFECYPSSD 70 (523)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 47899999983
Done!