Query 008338
Match_columns 569
No_of_seqs 140 out of 168
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys3_A UNC-112-related protein 15.5 1.6E+02 0.0056 26.9 4.7 42 487-543 93-134 (137)
2 2i5e_A Hypothetical protein MM 14.1 83 0.0028 28.7 2.3 33 485-520 169-206 (211)
3 2jrw_A Cyclic extended PEP.1; 9.1 1.5E+02 0.0052 20.0 1.6 15 327-341 9-23 (26)
4 3oak_C Transcription elongatio 5.9 1.3E+02 0.0046 21.4 0.2 9 292-301 15-23 (31)
5 2hm3_A Nematocyst outer WALL a 5.5 94 0.0032 21.7 -0.7 11 444-454 14-24 (31)
6 2l60_A Peptide YY; GPCR ligand 5.4 3.1E+02 0.011 20.6 1.9 14 487-500 14-27 (41)
7 1iyc_A Scarabaecin; antifungal 5.3 1.6E+02 0.0055 21.1 0.3 13 174-186 9-21 (36)
8 2aze_C Retinoblastoma-associat 5.1 3.3E+02 0.011 20.8 2.0 13 530-542 13-25 (46)
9 1wvk_A AT2G23090/F21P24.15; st 5.1 1.7E+02 0.0058 25.0 0.4 10 445-454 75-84 (86)
10 2i7u_A Four-alpha-helix bundle 5.0 6.1E+02 0.021 19.9 3.5 18 526-543 7-24 (62)
No 1
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.54 E-value=1.6e+02 Score=26.88 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=31.2
Q ss_pred cCcCHHHHHHhhHhhhhchhhHHhhcccccccccccccchhhHhHHHHHHHHHHHHh
Q 008338 487 DFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILAR 543 (569)
Q Consensus 487 DFdTeEEy~~Ym~~KEAlPKAAFQyGVKm~DGRKTRK~n~d~kLdre~~KI~~Il~k 543 (569)
=+||+|+|+..|. ||=.|+ +|-=|+|- --.+|.+.|...|+-
T Consensus 93 ~cdsEeqy~~WMa---A~rlAs--kgktma~~----------sy~~ev~~i~~~l~~ 134 (137)
T 2ys3_A 93 RCQDEQQYARWMA---GCRLAS--KGRTMADS----------SYTSEVQAILAFLSL 134 (137)
T ss_dssp EESSHHHHHHHHH---HHHHHH--TSCCTTST----------HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHH---HHHHhc--cCcchhhh----------hhHHHHHHHHHHHHh
Confidence 3899999999997 666666 66666665 466777777777653
No 2
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=14.10 E-value=83 Score=28.69 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.2
Q ss_pred cccCcCHHHHHHhhHh-----hhhchhhHHhhccccccccc
Q 008338 485 RWDFETEEEWATYNEQ-----KEAMPKAAFQFGVKMQDGRK 520 (569)
Q Consensus 485 RWDFdTeEEy~~Ym~~-----KEAlPKAAFQyGVKm~DGRK 520 (569)
.||.||.|+|...... ++.|-. . |.|.+.+||=
T Consensus 169 ~~DVDTpeDl~~~~~~~~g~t~~~l~~--~-~~~~~~~~~~ 206 (211)
T 2i5e_A 169 GTDIDEPEDLVELLIHGKGAAKDYIES--K-FRLEVKKGRV 206 (211)
T ss_dssp TCCCCSHHHHHHHHHHCCSHHHHHHHT--T-EEEEECSSSE
T ss_pred ccCCCCHHHHHHHHHcCCchHHHHHHH--h-heeeccCCce
Confidence 4899999999887664 544433 3 8888888873
No 3
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=9.06 E-value=1.5e+02 Score=19.99 Aligned_cols=15 Identities=53% Similarity=1.010 Sum_probs=11.6
Q ss_pred cCCCCcCCCCCCCCC
Q 008338 327 VSYFSESVYGPVPPA 341 (569)
Q Consensus 327 ~sYF~~p~~~p~pp~ 341 (569)
..||++..|-|+||-
T Consensus 9 enyfserpyhppppc 23 (26)
T 2jrw_A 9 ENYFSERPYHPPPPC 23 (26)
T ss_dssp SSSCCSSSCCSCSCC
T ss_pred hhhcccCCCCCCCCC
Confidence 479999888888753
No 4
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=5.93 E-value=1.3e+02 Score=21.41 Aligned_cols=9 Identities=78% Similarity=1.508 Sum_probs=7.1
Q ss_pred CcccCCCccc
Q 008338 292 DIFVGAGTDY 301 (569)
Q Consensus 292 dIF~d~G~DY 301 (569)
.|| |+|.||
T Consensus 15 eiF-GdG~dY 23 (31)
T 3oak_C 15 DIF-GDGHDY 23 (31)
T ss_dssp HHH-CCSCTT
T ss_pred HHh-CCCchh
Confidence 588 578898
No 5
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=5.53 E-value=94 Score=21.73 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=8.7
Q ss_pred CCccccccCCh
Q 008338 444 SESYSECYPGY 454 (569)
Q Consensus 444 ~dsYAECYPG~ 454 (569)
-|.|-||-||-
T Consensus 14 gdcypeckpgc 24 (31)
T 2hm3_A 14 GDCYPECKPGC 24 (31)
T ss_dssp GGGTTTTCHHH
T ss_pred ccccCccCCCc
Confidence 37888888886
No 6
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=5.39 E-value=3.1e+02 Score=20.65 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=12.0
Q ss_pred cCcCHHHHHHhhHh
Q 008338 487 DFETEEEWATYNEQ 500 (569)
Q Consensus 487 DFdTeEEy~~Ym~~ 500 (569)
||.|.|+++.|...
T Consensus 14 ~~aspEela~Y~~~ 27 (41)
T 2l60_A 14 KKLSPEELNRYYAS 27 (41)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 78999999999753
No 7
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=5.25 E-value=1.6e+02 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=10.6
Q ss_pred hhhhhcccCCCCC
Q 008338 174 TTLHRSKADCPVP 186 (569)
Q Consensus 174 TTL~RSKaDcp~~ 186 (569)
..|+||+..||.-
T Consensus 9 kvlirsrsncpkg 21 (36)
T 1iyc_A 9 KVLIRSRSNCPKG 21 (36)
T ss_dssp SCCCTTTSCCCSS
T ss_pred eEEEeeccCCCCc
Confidence 3589999999965
No 8
>2aze_C Retinoblastoma-associated protein; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: j.119.1.1
Probab=5.15 E-value=3.3e+02 Score=20.79 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHH
Q 008338 530 LTNELHKINKILA 542 (569)
Q Consensus 530 Ldre~~KI~~Il~ 542 (569)
+-+-+||||+++.
T Consensus 13 ~~~rFQKINqMvn 25 (46)
T 2aze_C 13 TSEKFQKINQMVC 25 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHh
Confidence 3467999999997
No 9
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=5.14 E-value=1.7e+02 Score=24.97 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.1
Q ss_pred CccccccCCh
Q 008338 445 ESYSECYPGY 454 (569)
Q Consensus 445 dsYAECYPG~ 454 (569)
..+.||||++
T Consensus 75 ~~~~eCFP~~ 84 (86)
T 1wvk_A 75 ADVVACFPHL 84 (86)
T ss_dssp CGGGTTSGGG
T ss_pred CCHHHHCcCC
Confidence 3489999987
No 10
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=5.00 E-value=6.1e+02 Score=19.94 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=13.5
Q ss_pred hhhHhHHHHHHHHHHHHh
Q 008338 526 KDQKLTNELHKINKILAR 543 (569)
Q Consensus 526 ~d~kLdre~~KI~~Il~k 543 (569)
+.+||=.||+|+..--+|
T Consensus 7 eaaklfeewkklaeeaak 24 (62)
T 2i7u_A 7 EAAKLFEEWKKLAEEAAK 24 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999998655443
Done!