Query 008338
Match_columns 569
No_of_seqs 140 out of 168
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 23:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008338.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008338hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6da3 d.56.1.2 (A:146-214,A: 15.0 20 0.0014 28.8 0.5 18 75-92 55-72 (105)
2 d2ifxa1 d.58.4.19 (A:1-108) Hy 8.3 78 0.0057 25.5 2.0 36 473-512 56-91 (108)
3 d1a6db3 d.56.1.2 (B:145-215,B: 8.2 43 0.0031 26.7 0.4 17 75-91 57-73 (107)
4 d2pcsa1 d.129.3.10 (A:1-147) H 7.1 25 0.0018 27.4 -1.6 14 444-457 23-36 (147)
5 d1q3qa3 d.56.1.2 (A:146-216,A: 6.8 51 0.0037 26.1 0.2 19 75-93 58-76 (107)
6 d2bi6h1 g.3.12.1 (H:8-31) Brom 5.7 89 0.0065 19.5 0.8 9 445-454 2-10 (26)
7 d1iyca_ g.31.1.2 (A:) Antifung 5.3 76 0.0055 21.1 0.3 13 174-186 9-21 (36)
8 d1dp3a_ a.55.1.2 (A:) DNA-bind 4.6 1.5E+02 0.011 21.7 1.5 19 533-551 11-29 (55)
9 d1e5ka_ c.68.1.8 (A:) Molybden 4.3 1.3E+02 0.0095 24.0 1.2 12 486-497 176-187 (188)
10 d2b0ca1 c.108.1.2 (A:8-204) Pu 3.8 1.5E+02 0.011 22.6 1.0 11 158-168 1-11 (197)
No 1
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}
Probab=15.03 E-value=20 Score=28.84 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=16.4
Q ss_pred hhhcCCCccccccccchh
Q 008338 75 SKYLGGDVEHTHLVKGLD 92 (569)
Q Consensus 75 sk~~ggd~~~t~lvkgld 92 (569)
.+..||.++.|.||+||=
T Consensus 55 ~k~~Ggs~~dS~lv~G~v 72 (105)
T d1a6da3 55 DKKNGGSVNDTQFISAVS 72 (105)
T ss_dssp EECCCSCSTTCEEESCEE
T ss_pred hhccCCChhheeeeeccc
Confidence 578999999999999994
No 2
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=8.29 E-value=78 Score=25.50 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=26.3
Q ss_pred ccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhc
Q 008338 473 MDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFG 512 (569)
Q Consensus 473 MD~G~~~KG~~~RWDFdTeEEy~~Ym~~KEAlPKAAFQyG 512 (569)
.|.|. --.||--=|.+++.|..||++-- -||=|.-|
T Consensus 56 ~dig~--vdaigecwf~~e~~y~~ym~sdi--rkawfehg 91 (108)
T d2ifxa1 56 FDIGH--VDAIGECWFKDDAAYATYMASDI--RKAWFEHG 91 (108)
T ss_dssp CCCCC--CCEEEEEEESSHHHHHHHHHCHH--HHHHHHHH
T ss_pred ccccc--cchhhhhhhccHHHHHHHHHHHH--HHHHHHhc
Confidence 45664 24455555999999999999864 78888766
No 3
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Probab=8.18 E-value=43 Score=26.75 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.1
Q ss_pred hhhcCCCccccccccch
Q 008338 75 SKYLGGDVEHTHLVKGL 91 (569)
Q Consensus 75 sk~~ggd~~~t~lvkgl 91 (569)
-|..||.++-|.||+|+
T Consensus 57 ~k~~Ggs~~dS~li~G~ 73 (107)
T d1a6db3 57 VKKQGGAIDDTQLINKA 73 (107)
T ss_dssp EEEESSCGGGCEEESSC
T ss_pred EeecCCChhhcEEEecc
Confidence 46789999999999995
No 4
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=7.10 E-value=25 Score=27.35 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.0
Q ss_pred CCccccccCChhhh
Q 008338 444 SESYSECYPGYQEY 457 (569)
Q Consensus 444 ~dsYAECYPG~~e~ 457 (569)
++.|++|.||.+.+
T Consensus 23 ~~~~~~~~Pg~~~~ 36 (147)
T d2pcsa1 23 PSILSKCIMGCKSL 36 (147)
T ss_dssp HHHHHHHSTTEEEE
T ss_pred HHHHHhhCcchhhc
Confidence 68999999999754
No 5
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Probab=6.77 E-value=51 Score=26.13 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.8
Q ss_pred hhhcCCCccccccccchhH
Q 008338 75 SKYLGGDVEHTHLVKGLDY 93 (569)
Q Consensus 75 sk~~ggd~~~t~lvkgld~ 93 (569)
-|..||.++-|-||+||=|
T Consensus 58 ~K~~Ggsv~dS~lv~G~vl 76 (107)
T d1q3qa3 58 EKKAGEGVEESELVKAVTI 76 (107)
T ss_dssp EEEEBSCGGGCEEESSEEE
T ss_pred EEecCCChhhCEEEccEEE
Confidence 5778999999999999954
No 6
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=5.69 E-value=89 Score=19.53 Aligned_cols=9 Identities=56% Similarity=1.763 Sum_probs=6.9
Q ss_pred CccccccCCh
Q 008338 445 ESYSECYPGY 454 (569)
Q Consensus 445 dsYAECYPG~ 454 (569)
|.|+.| ||+
T Consensus 2 dtysdc-pgf 10 (26)
T d2bi6h1 2 DTYSDC-PGF 10 (26)
T ss_dssp CCCSSC-CTT
T ss_pred CccccC-chH
Confidence 678887 777
No 7
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=5.25 E-value=76 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=10.6
Q ss_pred hhhhhcccCCCCC
Q 008338 174 TTLHRSKADCPVP 186 (569)
Q Consensus 174 TTL~RSKaDcp~~ 186 (569)
..|+||+..||.-
T Consensus 9 kvlirsrsncpkg 21 (36)
T d1iyca_ 9 KVLIRSRSNCPKG 21 (36)
T ss_dssp SCCCTTTSCCCSS
T ss_pred eEEEeeccCCCCc
Confidence 3589999999965
No 8
>d1dp3a_ a.55.1.2 (A:) DNA-binding domain (fragment?) of the TraM protein {Escherichia coli [TaxId: 562]}
Probab=4.60 E-value=1.5e+02 Score=21.72 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhcccCCC
Q 008338 533 ELHKINKILARKKMEKDTN 551 (569)
Q Consensus 533 e~~KI~~Il~krK~~~~~~ 551 (569)
=..|||.|+++|+.++...
T Consensus 11 v~ekIn~ive~rr~eGa~~ 29 (55)
T d1dp3a_ 11 IVYKINKIVERRRAEGAKS 29 (55)
T ss_dssp HHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 4579999999999887643
No 9
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=4.29 E-value=1.3e+02 Score=23.96 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.8
Q ss_pred ccCcCHHHHHHh
Q 008338 486 WDFETEEEWATY 497 (569)
Q Consensus 486 WDFdTeEEy~~Y 497 (569)
.|.+|.|+|++|
T Consensus 176 ~ninTpeDl~r~ 187 (188)
T d1e5ka_ 176 VNVNTPEELARW 187 (188)
T ss_dssp CCCCSHHHHHTT
T ss_pred cCCCCHHHHHhh
Confidence 589999999987
No 10
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}
Probab=3.77 E-value=1.5e+02 Score=22.59 Aligned_cols=11 Identities=27% Similarity=0.449 Sum_probs=9.2
Q ss_pred eEEEEecCCCC
Q 008338 158 MSFIFNTEGGY 168 (569)
Q Consensus 158 MaYvfdLe~e~ 168 (569)
|-|+|||+.-.
T Consensus 1 ~l~iFDlDgtL 11 (197)
T d2b0ca1 1 MLYIFDLGNVI 11 (197)
T ss_dssp CEEEECCBTTT
T ss_pred CEEEEeCCCCc
Confidence 78999999864
Done!