Query 008339
Match_columns 569
No_of_seqs 164 out of 201
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 22:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2871 Uncharacterized conser 100.0 1E-102 2E-107 801.3 16.8 383 127-569 3-449 (449)
2 PF13898 DUF4205: Domain of un 100.0 5.7E-92 1.2E-96 729.8 23.7 258 132-398 1-288 (342)
3 KOG0027 Calmodulin and related 98.2 1.7E-06 3.7E-11 80.2 4.5 91 386-478 8-104 (151)
4 COG5126 FRQ1 Ca2+-binding prot 97.6 4.3E-05 9.4E-10 73.4 3.0 86 386-477 20-110 (160)
5 cd05022 S-100A13 S-100A13: S-1 97.5 0.00018 3.9E-09 62.6 5.6 65 380-445 2-75 (89)
6 PF13499 EF-hand_7: EF-hand do 97.4 0.00028 6E-09 56.0 5.6 55 387-442 1-65 (66)
7 cd05027 S-100B S-100B: S-100B 97.3 0.00064 1.4E-08 58.8 6.3 63 381-444 3-78 (88)
8 KOG0027 Calmodulin and related 97.2 0.00057 1.2E-08 63.4 5.7 57 386-443 85-147 (151)
9 cd05025 S-100A1 S-100A1: S-100 97.1 0.0013 2.9E-08 56.3 6.4 65 380-445 3-80 (92)
10 COG5126 FRQ1 Ca2+-binding prot 97.1 0.00098 2.1E-08 64.2 6.1 59 386-445 92-156 (160)
11 cd05031 S-100A10_like S-100A10 97.1 0.0015 3.2E-08 56.4 6.3 63 381-443 3-77 (94)
12 KOG0028 Ca2+-binding protein ( 97.1 0.0004 8.6E-09 67.0 3.0 90 385-480 32-127 (172)
13 cd05026 S-100Z S-100Z: S-100Z 96.6 0.0052 1.1E-07 53.3 6.4 66 379-445 3-81 (93)
14 cd05029 S-100A6 S-100A6: S-100 96.6 0.0052 1.1E-07 53.2 6.3 66 379-444 3-78 (88)
15 PF13405 EF-hand_6: EF-hand do 96.6 0.0024 5.2E-08 44.6 3.4 30 387-417 1-31 (31)
16 cd00213 S-100 S-100: S-100 dom 96.4 0.0059 1.3E-07 51.5 5.3 63 382-445 4-79 (88)
17 PTZ00183 centrin; Provisional 96.4 0.0037 7.9E-08 56.5 4.2 86 386-477 17-108 (158)
18 cd00052 EH Eps15 homology doma 96.4 0.006 1.3E-07 47.8 4.7 51 389-442 2-58 (67)
19 KOG0031 Myosin regulatory ligh 96.3 0.003 6.4E-08 60.9 3.4 81 386-475 32-117 (171)
20 smart00027 EH Eps15 homology d 96.0 0.014 3E-07 50.4 5.7 59 386-447 10-74 (96)
21 PTZ00184 calmodulin; Provision 96.0 0.0074 1.6E-07 53.6 4.1 84 386-475 11-100 (149)
22 cd00051 EFh EF-hand, calcium b 95.9 0.019 4.2E-07 42.4 5.1 54 388-442 2-61 (63)
23 PF14658 EF-hand_9: EF-hand do 95.7 0.013 2.9E-07 48.9 4.0 52 390-442 2-61 (66)
24 KOG0030 Myosin essential light 95.6 0.021 4.5E-07 54.4 5.2 57 387-444 89-150 (152)
25 PF00036 EF-hand_1: EF hand; 95.5 0.017 3.7E-07 40.6 3.4 28 388-416 2-29 (29)
26 KOG0030 Myosin essential light 95.4 0.01 2.2E-07 56.5 2.7 85 386-475 11-104 (152)
27 PTZ00183 centrin; Provisional 95.4 0.034 7.3E-07 50.2 5.9 57 386-443 90-152 (158)
28 PF02809 UIM: Ubiquitin intera 95.3 0.0072 1.6E-07 38.6 0.8 17 3-19 1-17 (18)
29 PTZ00184 calmodulin; Provision 95.0 0.059 1.3E-06 47.8 6.2 56 386-442 84-145 (149)
30 PF13833 EF-hand_8: EF-hand do 95.0 0.049 1.1E-06 41.8 4.8 43 401-443 2-51 (54)
31 cd05023 S-100A11 S-100A11: S-1 94.6 0.11 2.4E-06 45.1 6.7 67 379-445 2-80 (89)
32 cd05030 calgranulins Calgranul 94.5 0.081 1.8E-06 45.5 5.5 65 381-445 3-79 (88)
33 PLN02964 phosphatidylserine de 93.9 0.041 8.8E-07 63.3 3.2 81 386-477 143-233 (644)
34 KOG0028 Ca2+-binding protein ( 92.8 0.17 3.8E-06 49.2 5.0 54 386-440 106-165 (172)
35 smart00726 UIM Ubiquitin-inter 92.6 0.058 1.3E-06 37.5 1.2 18 4-21 1-18 (26)
36 KOG0031 Myosin regulatory ligh 91.1 0.46 1E-05 46.2 5.8 59 386-445 101-165 (171)
37 KOG0037 Ca2+-binding protein, 90.8 0.34 7.4E-06 49.1 4.7 58 387-445 125-188 (221)
38 KOG0034 Ca2+/calmodulin-depend 90.1 0.53 1.2E-05 46.5 5.4 59 386-445 104-175 (187)
39 PF13202 EF-hand_5: EF hand; P 88.6 0.53 1.1E-05 31.9 2.9 25 388-413 1-25 (25)
40 KOG2871 Uncharacterized conser 88.1 0.014 3.1E-07 62.7 -7.5 248 118-403 37-331 (449)
41 smart00054 EFh EF-hand, calciu 87.5 0.61 1.3E-05 29.1 2.6 28 388-416 2-29 (29)
42 KOG0036 Predicted mitochondria 87.3 0.97 2.1E-05 49.8 5.5 61 383-444 79-145 (463)
43 cd00252 SPARC_EC SPARC_EC; ext 86.3 1.5 3.3E-05 40.1 5.5 58 383-445 45-108 (116)
44 KOG0034 Ca2+/calmodulin-depend 82.9 0.89 1.9E-05 45.0 2.5 81 386-475 33-120 (187)
45 KOG0036 Predicted mitochondria 82.8 1.1 2.3E-05 49.5 3.3 59 382-441 10-75 (463)
46 PLN02964 phosphatidylserine de 73.7 6.6 0.00014 45.7 6.3 58 387-445 180-243 (644)
47 KOG0377 Protein serine/threoni 70.0 6.8 0.00015 43.9 5.0 58 387-445 548-615 (631)
48 KOG0044 Ca2+ sensor (EF-Hand s 67.1 13 0.00028 37.2 6.0 85 387-477 27-118 (193)
49 PF13833 EF-hand_8: EF-hand do 61.3 13 0.00028 28.3 3.8 29 386-415 25-53 (54)
50 KOG4251 Calcium binding protei 54.8 17 0.00036 38.2 4.4 80 363-444 77-167 (362)
51 KOG0037 Ca2+-binding protein, 53.7 8 0.00017 39.5 1.9 54 386-441 57-118 (221)
52 PRK12309 transaldolase/EF-hand 52.8 11 0.00024 41.3 3.0 51 385-443 333-383 (391)
53 KOG0041 Predicted Ca2+-binding 51.7 19 0.00041 36.9 4.0 54 386-441 99-159 (244)
54 KOG4065 Uncharacterized conser 50.8 27 0.00057 33.0 4.6 54 388-442 69-142 (144)
55 PF13499 EF-hand_7: EF-hand do 50.5 26 0.00055 27.5 4.0 29 384-413 38-66 (66)
56 KOG0044 Ca2+ sensor (EF-Hand s 49.2 31 0.00067 34.6 5.1 52 386-441 64-124 (193)
57 PF12763 EF-hand_4: Cytoskelet 48.2 45 0.00098 30.1 5.6 52 386-441 10-67 (104)
58 KOG0377 Protein serine/threoni 47.5 19 0.00042 40.5 3.7 107 333-441 396-523 (631)
59 cd05024 S-100A10 S-100A10: A s 42.2 79 0.0017 28.2 6.1 61 381-444 3-75 (91)
60 KOG0038 Ca2+-binding kinase in 39.1 38 0.00083 33.2 3.9 61 384-445 106-177 (189)
61 KOG0046 Ca2+-binding actin-bun 38.7 50 0.0011 38.0 5.3 61 386-448 19-88 (627)
62 PF14788 EF-hand_10: EF hand; 36.4 50 0.0011 26.7 3.6 31 385-416 20-50 (51)
63 PF14788 EF-hand_10: EF hand; 33.1 78 0.0017 25.6 4.1 39 404-443 2-47 (51)
64 KOG0421 Ubiquitin-protein liga 30.5 51 0.0011 32.1 3.2 36 17-53 5-40 (175)
65 KOG2427 Uncharacterized conser 29.3 35 0.00075 37.7 2.1 24 164-187 29-53 (391)
66 KOG2505 Ankyrin repeat protein 28.4 44 0.00095 38.2 2.7 25 38-62 565-589 (591)
67 cd00051 EFh EF-hand, calcium b 27.7 82 0.0018 22.6 3.3 27 386-413 36-62 (63)
68 PF08325 WLM: WLM domain; Int 26.7 36 0.00079 33.7 1.6 19 43-61 168-186 (186)
69 KOG3088 Secretory carrier memb 24.2 2E+02 0.0044 31.0 6.5 29 35-63 49-81 (313)
70 KOG4223 Reticulocalbin, calume 23.2 85 0.0018 34.0 3.6 89 385-477 76-181 (325)
71 PF12896 Apc4: Anaphase-promot 22.7 71 0.0015 31.1 2.8 67 233-310 25-92 (210)
72 PRK11409 antitoxin YefM; Provi 22.1 86 0.0019 27.1 2.8 34 165-198 28-71 (83)
73 PF06543 Lac_bphage_repr: Lact 21.6 55 0.0012 26.3 1.4 22 117-139 25-46 (49)
74 KOG0038 Ca2+-binding kinase in 21.2 68 0.0015 31.6 2.2 42 429-475 83-124 (189)
No 1
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-102 Score=801.30 Aligned_cols=383 Identities=41% Similarity=0.649 Sum_probs=343.3
Q ss_pred HHHHHHhcccCCcccccchhhhhhcCceeecCCCCceeEEEccCCcchHHHHHHHH-HHHHHH----------------H
Q 008339 127 EANQLFSMMFGSEVSKDILAQWSNQGIRFSSDSETSMGLVQHEGGPCGVLAAIQVI-LQFLIL----------------V 189 (569)
Q Consensus 127 ~a~eLr~lLFG~~~~~~~~~~W~~QGF~Fs~~~~layGLvQ~~GGPCGVLAaVQAf-LK~LLF----------------~ 189 (569)
+.+|+..+|||..+++++++||. |||+|++++.+ +|+|++||||||+|+|||| ||+++| +
T Consensus 3 el~e~~~llwg~~vs~~vf~rwt-qgf~fsk~~~t--~lvq~eggpcavia~vqafllk~ilm~~e~~~~s~~~g~~~~e 79 (449)
T KOG2871|consen 3 ELVEESDLLWGIVVSKSVFARWT-QGFRFSKEEIT--ALVQPEGGPCAVIAPVQAFLLKAILMRAEWLQTSFCSGAPKEE 79 (449)
T ss_pred hHHHHHHHHhhhhhhHHHHHHhh-cceeecCcccc--cccccCCCceeeehhHHHHHHHHHhcCccccccccccCchHHH
Confidence 45899999999999999999999 99999998887 6999999999999999999 999999 7
Q ss_pred HHHHHHHHHHHh--cCCCCceEEEee----------------------------ccccccc-------ccccceeEEEEe
Q 008339 190 ALVKSMGEILFS--CGSNKRAVLAKA----------------------------LEGLSIE-------SGSDMQKVIRVD 232 (569)
Q Consensus 190 aL~~ALa~ILw~--ag~~~~avV~~~----------------------------~e~~~~~-------~~~~~~e~l~~~ 232 (569)
.|++++||||-. |...+.+++... ...+.++ +.+.||+.++..
T Consensus 80 l~~h~lsd~~~s~~~~~~~~~~Lv~lL~g~tte~~ASlt~~~~~SS~q~eeA~~s~~L~ie~~~~~~ls~~~~~~~l~~~ 159 (449)
T KOG2871|consen 80 LLYHLLSDILASRLCSVVQGYVLVYLLRGRTTEEVASLTGPLAASSDQVEEALFSAALEIERTISDKLSVTMFHPSLDEV 159 (449)
T ss_pred HHHHhhhhHhHhhhhhhccceEEEEeeccCchhhhhhccCccccchHHHHHHHHhcchhhhhhhhcccCHHHHhHhhhhe
Confidence 899999999998 444444444310 0011222 446789999999
Q ss_pred ecCCHHHHHHHHHHhcccccccchhHHHHHHHHHhcchhHHhhccCCCCCCcccCCCCcchHHhHHhhhcCcccccccCC
Q 008339 233 AYTSQATALQKLEEALPVFRSRMGAMLFLISALLSRGLDYVQADRDDPTPSLVTAPFGHASQEIVNLLLCGQAVPNVFDG 312 (569)
Q Consensus 233 ~f~s~edl~~~l~~~l~~f~~~~GVlLFLYSvILSRGie~V~~DmDdp~~~LI~~~~G~cSQeLVNLLLTGrAvsnVfDG 312 (569)
.|++...+...+..++..|++.+||+|||||++||||+++||+|+||++.|||+++|||+||+|||||||||||||||||
T Consensus 160 ~f~~~a~~~~~~~~~~~~~~~t~GvLLFLySalLTrgle~V~aDiddas~plits~~g~gsq~iVnLLLtGrAvpnV~dg 239 (449)
T KOG2871|consen 160 FFDHSACYFHDSVTEYFTEEETPGVLLFLYSALLTRGLEKVRADIDDASEPLITSSYGHGSQSIVNLLLTGRAVPNVWDG 239 (449)
T ss_pred eccchHHHHHHHHHHHHhhhcccchHHHHHHHHHhhhHHHhhhccccCCCCcccCCCCcchHHHHHHHHccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeeccccCCceeeeeecccCCccccccCCCCCCCceEEEeeCCceeEEEecCcCccc-cchHHHHHHHHHHH
Q 008339 313 RMDLGGGMCLKGISTSVEVGFLTLLESLNFCKVGQHLKCPKWPIWVVGSESHYTVLFALDTSVQD-ENELEERESHIRKA 391 (569)
Q Consensus 313 ~~dlGg~l~LkGI~~rs~IGfLtl~E~~~~c~VGs~lKtP~~PIWVv~se~HysVLF~~~~~l~~-~~~~~~~~~~arra 391 (569)
++|+|| |+|+||+++++|||||++|.+|||+||+++|+|+|||||++|++||||||+.|+.++. ++++ +++||+
T Consensus 240 ~~dvgg-m~l~gI~e~~dvgfltlle~l~~ckvgs~lk~pr~Piwv~gSeth~tvlfs~d~~l~~~~~~s----~q~rR~ 314 (449)
T KOG2871|consen 240 VVDVGG-MKLYGIPEQGDVGFLTLLELLRYCKVGSALKQPRQPIWVLGSETHLTVLFSCDGHLVVPENPS----EQLRRN 314 (449)
T ss_pred ccccCc-ceeeccccccchhHHHHHHHHHHHHHHHhhcCCCCceeEecCCCceEEEEecCccccCCCCCC----HHHHhh
Confidence 999999 9999999999999999999999999999999999999999999999999999999986 6665 789999
Q ss_pred HHhcCCCCCCCceehhhHHHHHHHhcCC--------CChhhhhcccCCCeeehHHHHHHHhhcccccCCCCCCcCcCcce
Q 008339 392 FDAQDKSGGGGFISVEGFQQVIRDTNIR--------LPREKLDHLCGSGFIVWSEFWQVILDLDKSLGGLKDSTGLMGKK 463 (569)
Q Consensus 392 Fd~fD~e~gnGFIs~~~L~~VL~~Lgl~--------l~~~~Ld~me~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~~~~~ 463 (569)
|+++|++ |||||+++.|++||.++|.. ++...|++ +++||||.++|+.+|||.+-+ ++|+
T Consensus 315 f~a~d~~-d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~p-E~~~iil~~d~lg~~~p~tgs----------~g~~ 382 (449)
T KOG2871|consen 315 FHAYDPE-DNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDP-ESLGIILLEDFLGEFFPTTGS----------SGPG 382 (449)
T ss_pred hhccCcc-CCCeeecHHHHHHHHHhcccccCHHHHHHhcCccCh-hhcceEEeccccccccCcccc----------CCCc
Confidence 9999999 58999999999999999943 45567887 999999999999999997766 6799
Q ss_pred eeeEEeeCCcccccCCCCceecCCCCCcccccccccccccCCCCCChhhhhhhhhcccCCCCCCCCCCcccCCCCCCCCC
Q 008339 464 VFDLYHFNGIAKSDLNGGQVSSSGGDTPLQRPRLTKLRVSVPPRWTPEEFMADVAVSSASGGNESSGKETEAAKPEPPQH 543 (569)
Q Consensus 464 ~F~lyhYNGi~~s~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (569)
+|++|||||+.+||.||+++|++||++.. + .. .+.+.|..
T Consensus 383 ~f~~~h~nGi~gsn~ggka~~veGg~~l~-------------~-~~--------------------------~k~~st~N 422 (449)
T KOG2871|consen 383 AFAGYHYNGISGSNVGGKAMYVEGGAALP-------------D-VV--------------------------AKEESTLN 422 (449)
T ss_pred ceeeeeccCccCCCCCCceEEeecccccC-------------C-cc--------------------------chhhhccc
Confidence 99999999999999999999999999655 1 11 13444567
Q ss_pred ChhhhhhhhcCCceEeeecCC-CCCCC
Q 008339 544 APLVDCIRTRWARAVCNWIGD-PPSIV 569 (569)
Q Consensus 544 ~pl~~cl~TkWp~~~~~W~~~-~PSi~ 569 (569)
+||++|||||||+|+|+|+.+ .|||+
T Consensus 423 tPlvrcirTKW~~a~iswh~g~~psL~ 449 (449)
T KOG2871|consen 423 TPLVRCIRTKWPEAEISWHVGMLPSLN 449 (449)
T ss_pred chHHHHHhccCCceeEEeecCCCccCC
Confidence 799999999999999999955 89985
No 2
>PF13898 DUF4205: Domain of unknown function (DUF4205)
Probab=100.00 E-value=5.7e-92 Score=729.81 Aligned_cols=258 Identities=45% Similarity=0.785 Sum_probs=238.3
Q ss_pred HhcccCCcccccchhhhhhcCceeecC-CCCceeEEEccCCcchHHHHHHHH-HHHHHH---------------------
Q 008339 132 FSMMFGSEVSKDILAQWSNQGIRFSSD-SETSMGLVQHEGGPCGVLAAIQVI-LQFLIL--------------------- 188 (569)
Q Consensus 132 r~lLFG~~~~~~~~~~W~~QGF~Fs~~-~~layGLvQ~~GGPCGVLAaVQAf-LK~LLF--------------------- 188 (569)
|++|||++.+ +|+++|++|||+|+++ ++++|||+|++||||||||||||| ||||||
T Consensus 1 r~llFG~~~~-~~~~~W~qqGF~Fs~~~~~l~~gLvQ~~GGPCgVlA~VQA~iLK~LLF~~~~~~~~~~~~~~~s~~~q~ 79 (342)
T PF13898_consen 1 RQLLFGSTVK-PFFSEWKQQGFVFSDDEPDLPYGLVQHKGGPCGVLAAVQAFILKYLLFERKGSDVNSSSLLQPSEEEQT 79 (342)
T ss_pred CeeeeCCCCC-CcCHHHHhCCEEeCCCCCCCceEEEecCCCCchhHHHHHHHHHHHHhcCCCccccccccccCCCHHHHH
Confidence 6899999986 8999999999999987 599999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEeeccccc-----ccccccceeEEEEeecCCHHHHHHHHHHhccccc--ccchhHHHH
Q 008339 189 VALVKSMGEILFSCGSNKRAVLAKALEGLS-----IESGSDMQKVIRVDAYTSQATALQKLEEALPVFR--SRMGAMLFL 261 (569)
Q Consensus 189 ~aL~~ALa~ILw~ag~~~~avV~~~~e~~~-----~~~~~~~~e~l~~~~f~s~edl~~~l~~~l~~f~--~~~GVlLFL 261 (569)
+||++|||+|||+|+++++++||++.++.. ..+.++||+.|++++|+++++++.||++|+++|+ +++||||||
T Consensus 80 ~aLv~ALa~ILw~ag~~~~a~V~L~~~~~~~~~s~~~~~d~f~e~L~l~~~~s~e~l~~fl~~~i~~f~~~~~~Gvllfl 159 (342)
T PF13898_consen 80 EALVQALADILWQAGENKKAVVCLPSEDSQFSPSGDYSADGFTERLQLFEFTSIEDLEQFLRRHIPQFQEEGPSGVLLFL 159 (342)
T ss_pred HHHHHHHHHHHHhhccCCceEEEeeccccccccccccchhceeeeeeEEecCCHHHHHHHHHHHHHHhhcCCCceehHHH
Confidence 799999999999999999999998765433 3456889999999999999999999999999999 689999999
Q ss_pred HHHHHhcchhHHhhccCCCCCCcccCCCCcchHHhHHhhhcCcccccccCCccccCCceeeeccccCCceeeeeecccCC
Q 008339 262 ISALLSRGLDYVQADRDDPTPSLVTAPFGHASQEIVNLLLCGQAVPNVFDGRMDLGGGMCLKGISTSVEVGFLTLLESLN 341 (569)
Q Consensus 262 YSvILSRGie~V~~DmDdp~~~LI~~~~G~cSQeLVNLLLTGrAvsnVfDG~~dlGg~l~LkGI~~rs~IGfLtl~E~~~ 341 (569)
||+|||||+++|++|||+|+++||++ ||||||+|||||||||||||||||+.+++++++||||.+|++|||||++|+++
T Consensus 160 yS~ilsrg~~~v~~d~d~~~~~Li~~-~g~~sq~lvnLlLtG~A~~~v~dg~~~~~~~~~l~Gi~~~~~iG~Lt~~e~~~ 238 (342)
T PF13898_consen 160 YSVILSRGIERVRSDMDDPTTPLIGP-HGHCSQELVNLLLTGRAVSNVFDGVDDGNGGLTLKGISSRSDIGFLTLFEHYR 238 (342)
T ss_pred HHHHHhccHHHHHHHhCCCCCceeCc-CCchhhhhhheeEcCcccCcccCCccccCCCeEEeccccCCceeEEEehhhhc
Confidence 99999999999999999999999998 99999999999999999999999999997779999999999999999999999
Q ss_pred ccccccCCCCCCCceEEEeeCCceeEEEecCcCccccchHHHHHHHHHHHHHhcCCC
Q 008339 342 FCKVGQHLKCPKWPIWVVGSESHYTVLFALDTSVQDENELEERESHIRKAFDAQDKS 398 (569)
Q Consensus 342 ~c~VGs~lKtP~~PIWVv~se~HysVLF~~~~~l~~~~~~~~~~~~arraFd~fD~e 398 (569)
||+||++||||+|||||+||++||||||++|++++.+ +++++.||+|||+
T Consensus 239 ~~~vG~~lK~P~~PiWv~~~~~h~svlF~~~~~l~~~-------~~~~~~fdL~yyd 288 (342)
T PF13898_consen 239 YCQVGSFLKTPKFPIWVVCSESHYSVLFSLNRRLLSD-------WKAERRFDLYYYD 288 (342)
T ss_pred CCCcCCCCCCCCCCEEEEEeCCceEEEEeCCHHHhhh-------hcccCceeEEEEC
Confidence 9999999999999999999999999999999987654 4444444444444
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.17 E-value=1.7e-06 Score=80.16 Aligned_cols=91 Identities=26% Similarity=0.363 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhhcccccCCCCCCcCc
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILDLDKSLGGLKDSTGL 459 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~ 459 (569)
...+++|+.||.+ ++|+|+...|+.+|+.||...+++++..+ .+.|-|.+++|+.............. ....
T Consensus 8 ~el~~~F~~fD~d-~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~-~~~~ 85 (151)
T KOG0027|consen 8 LELKEAFQLFDKD-GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE-ASSE 85 (151)
T ss_pred HHHHHHHHHHCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc-ccHH
Confidence 5689999999999 68999999999999999999999887765 67999999999885554333211000 1122
Q ss_pred CcceeeeEEeeCCcccccC
Q 008339 460 MGKKVFDLYHFNGIAKSDL 478 (569)
Q Consensus 460 ~~~~~F~lyhYNGi~~s~~ 478 (569)
+.+++|.+||.||.++-..
T Consensus 86 el~eaF~~fD~d~~G~Is~ 104 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISA 104 (151)
T ss_pred HHHHHHHHHccCCCCcCcH
Confidence 5799999999999987433
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.57 E-value=4.3e-05 Score=73.36 Aligned_cols=86 Identities=16% Similarity=0.290 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc---c--CCCeeehHHHHHHHhhcccccCCCCCCcCcC
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL---C--GSGFIVWSEFWQVILDLDKSLGGLKDSTGLM 460 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m---e--~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~~ 460 (569)
++.+++|..+|.+ ++|+|+-+.|+.+||.||.+.+..++..| . +.|-|.+.+|+...-..-.. .+...+
T Consensus 20 ~~lkeaF~l~D~d-~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~-----~~~~Ee 93 (160)
T COG5126 20 QELKEAFQLFDRD-SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKR-----GDKEEE 93 (160)
T ss_pred HHHHHHHHHhCcC-CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhcc-----CCcHHH
Confidence 7899999999999 59999999999999999999999877665 1 35999999998854322211 111236
Q ss_pred cceeeeEEeeCCccccc
Q 008339 461 GKKVFDLYHFNGIAKSD 477 (569)
Q Consensus 461 ~~~~F~lyhYNGi~~s~ 477 (569)
...+|++||.|+.++-.
T Consensus 94 l~~aF~~fD~d~dG~Is 110 (160)
T COG5126 94 LREAFKLFDKDHDGYIS 110 (160)
T ss_pred HHHHHHHhCCCCCceec
Confidence 78999999999998633
No 5
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.50 E-value=0.00018 Score=62.62 Aligned_cols=65 Identities=22% Similarity=0.376 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHhcCC-CCCCCceehhhHHHHHHH-hcCCCCh-hhhhcc------cCCCeeehHHHHHHHhh
Q 008339 380 ELEERESHIRKAFDAQDK-SGGGGFISVEGFQQVIRD-TNIRLPR-EKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 380 ~~~~~~~~arraFd~fD~-e~gnGFIs~~~L~~VL~~-Lgl~l~~-~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
+.|.....++.+|..||. + ++|+|+...|..+|.. ||-.++. ++++.| .+.|-|-|.|||.-+..
T Consensus 2 ~lE~ai~~l~~~F~~fd~~~-~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 2 ELEKAIETLVSNFHKASVKG-GKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred hHHHHHHHHHHHHHHHhCCC-CCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 455666789999999999 6 6999999999999999 9876676 666665 68999999999985543
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.44 E-value=0.00028 Score=56.01 Aligned_cols=55 Identities=29% Similarity=0.572 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc----------cCCCeeehHHHHHH
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL----------CGSGFIVWSEFWQV 442 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m----------e~~GIIL~~eF~~~ 442 (569)
+++++|+.+|.+ ++|+|+.+.|..+++.++..++++.++++ .+.|.|-|+||.+.
T Consensus 1 ~l~~~F~~~D~d-~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKD-GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTT-SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCC-ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 578999999999 69999999999999999987766443332 68999999999864
No 7
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.27 E-value=0.00064 Score=58.76 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCC-ceehhhHHHHHHH-----hcCCCChhhhhcc------cCCCeeehHHHHHHHh
Q 008339 381 LEERESHIRKAFDAQD-KSGGGG-FISVEGFQQVIRD-----TNIRLPREKLDHL------CGSGFIVWSEFWQVIL 444 (569)
Q Consensus 381 ~~~~~~~arraFd~fD-~e~gnG-FIs~~~L~~VL~~-----Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~ 444 (569)
+|.....++++|+.|| .+ |+| +|+.+.|..+|+. +|...++++++.| .+.|-|-+.+|+..+.
T Consensus 3 le~~~~~l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 3 LEKAMVALIDVFHQYSGRE-GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHHHHHHhcccC-CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4555678999999998 56 689 5999999999999 9998888777665 6789999999997554
No 8
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.21 E-value=0.00057 Score=63.42 Aligned_cols=57 Identities=28% Similarity=0.557 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVI 443 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~ 443 (569)
..++++|..||.+ ++|||+...|..+|..||.+++.++++.| .+.|.|.+.+|.+-+
T Consensus 85 ~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 85 EELKEAFRVFDKD-GDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 5799999999999 69999999999999999999998887776 579999999998654
No 9
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.10 E-value=0.0013 Score=56.30 Aligned_cols=65 Identities=20% Similarity=0.375 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCCCc-eehhhHHHHHHH-hcCC----CChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 380 ELEERESHIRKAFDAQD-KSGGGGF-ISVEGFQQVIRD-TNIR----LPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 380 ~~~~~~~~arraFd~fD-~e~gnGF-Is~~~L~~VL~~-Lgl~----l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
.+|.....++++|+.|| .+ ++|+ |+.+.|..+|+. +|.. .++++++.| .+.|-|-+++|+..+..
T Consensus 3 ~~e~~~~~l~~~F~~fDd~d-g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 3 ELETAMETLINVFHAHSGKE-GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred hHHHHHHHHHHHHHHHhccc-CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45666788999999997 88 6995 999999999986 7653 355555554 67899999999875543
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.09 E-value=0.00098 Score=64.19 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
++++++|+.||.+ ++|+|+...|-.||..||.++++++++.| .+.|-|-+.+|.+.++.
T Consensus 92 Eel~~aF~~fD~d-~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 92 EELREAFKLFDKD-HDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHHhCCC-CCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 6899999999999 59999999999999999999999988776 57999999999886643
No 11
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.06 E-value=0.0015 Score=56.35 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCC-CCCCCceehhhHHHHHHH-----hcCCCChhhhhcc------cCCCeeehHHHHHHH
Q 008339 381 LEERESHIRKAFDAQDK-SGGGGFISVEGFQQVIRD-----TNIRLPREKLDHL------CGSGFIVWSEFWQVI 443 (569)
Q Consensus 381 ~~~~~~~arraFd~fD~-e~gnGFIs~~~L~~VL~~-----Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~ 443 (569)
.+.....++.+|+.||. ++++|+|+.+.|..+|+. +|..+++++++.| .+.|.|-+++|++-+
T Consensus 3 ~~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 3 LEHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 34456789999999997 633699999999999997 6777787766664 578999999998643
No 12
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0004 Score=66.99 Aligned_cols=90 Identities=28% Similarity=0.358 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhhcccccCCCCCCcC
Q 008339 385 ESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILDLDKSLGGLKDSTG 458 (569)
Q Consensus 385 ~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~~e~s~~~~k~~~~ 458 (569)
.+.++.+|+.||++ +.|+|.++.|...|++||..+..++++.| +++|.|-+++|....-. .-+.+| +.
T Consensus 32 ~q~i~e~f~lfd~~-~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~----k~~e~d-t~ 105 (172)
T KOG0028|consen 32 KQEIKEAFELFDPD-MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV----KLGERD-TK 105 (172)
T ss_pred HhhHHHHHHhhccC-CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH----HHhccC-cH
Confidence 47899999999998 69999999999999999999888775554 67999999999763210 011123 23
Q ss_pred cCcceeeeEEeeCCcccccCCC
Q 008339 459 LMGKKVFDLYHFNGIAKSDLNG 480 (569)
Q Consensus 459 ~~~~~~F~lyhYNGi~~s~~~~ 480 (569)
.+.++.|++++.++.|+-|.++
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~ 127 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRN 127 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHH
Confidence 3689999999999999865555
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.63 E-value=0.0052 Score=53.35 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHHHhcC-CCCCCC-ceehhhHHHHHHH-hc----CCCChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 379 NELEERESHIRKAFDAQD-KSGGGG-FISVEGFQQVIRD-TN----IRLPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 379 ~~~~~~~~~arraFd~fD-~e~gnG-FIs~~~L~~VL~~-Lg----l~l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
|++|.....++++|+.|| .+ |+| .|+.+.|..+|+. ++ -..++++++.| .+.|-|.+.||+..+..
T Consensus 3 ~~le~a~~~~~~~F~~~dd~d-gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 3 TQLEGAMDTLIRIFHNYSGKE-GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred cHHHHHHHHHHHHHHHHHccC-CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 456667788999999999 55 577 5999999999977 43 22244444443 67899999999985544
No 14
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.63 E-value=0.0052 Score=53.17 Aligned_cols=66 Identities=12% Similarity=0.219 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHhcCC-CCCCCceehhhHHHHHH---HhcCCCChhhhhcc------cCCCeeehHHHHHHHh
Q 008339 379 NELEERESHIRKAFDAQDK-SGGGGFISVEGFQQVIR---DTNIRLPREKLDHL------CGSGFIVWSEFWQVIL 444 (569)
Q Consensus 379 ~~~~~~~~~arraFd~fD~-e~gnGFIs~~~L~~VL~---~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~ 444 (569)
|++|.....+-..|+.||- ++.+|+|+.+.|.++|. .+|.++++++++.| .+.|-|-+++|+....
T Consensus 3 ~~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 3 SPLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 3455556677888999998 43489999999999997 37888888877765 6789999999987554
No 15
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.60 E-value=0.0024 Score=44.61 Aligned_cols=30 Identities=37% Similarity=0.728 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHH-Hhc
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIR-DTN 417 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~-~Lg 417 (569)
+++++|+.||.+ ++|+|+.++|..+|+ +||
T Consensus 1 ~l~~~F~~~D~d-~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKD-GDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TT-SSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCC-CCCcCcHHHHHHHHHHhcC
Confidence 468899999999 699999999999999 676
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.42 E-value=0.0059 Score=51.52 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCC--CCCCCceehhhHHHHHHH-hcCCCC----hhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 382 EERESHIRKAFDAQDK--SGGGGFISVEGFQQVIRD-TNIRLP----REKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 382 ~~~~~~arraFd~fD~--e~gnGFIs~~~L~~VL~~-Lgl~l~----~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
+.....++++|..||. + ++|+|+.+.|..+|+. +|..++ .++++.| .+.|.|.+++|+..+..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~-~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG-DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccC-CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 3445679999999999 5 6999999999999986 665543 5555554 56899999999886554
No 17
>PTZ00183 centrin; Provisional
Probab=96.41 E-value=0.0037 Score=56.49 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhhcccccCCCCCCcCc
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILDLDKSLGGLKDSTGL 459 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~ 459 (569)
.+++++|..+|.+ ++|+|+.++|..+|+.+|..++.+.++.+ .+.|.|-|.+|+..+....... .. ..
T Consensus 17 ~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~----~~-~~ 90 (158)
T PTZ00183 17 KEIREAFDLFDTD-GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER----DP-RE 90 (158)
T ss_pred HHHHHHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC----Cc-HH
Confidence 5789999999999 69999999999999999988777655543 6899999999987443211110 00 01
Q ss_pred CcceeeeEEeeCCccccc
Q 008339 460 MGKKVFDLYHFNGIAKSD 477 (569)
Q Consensus 460 ~~~~~F~lyhYNGi~~s~ 477 (569)
..+..|..|+-||.++-+
T Consensus 91 ~l~~~F~~~D~~~~G~i~ 108 (158)
T PTZ00183 91 EILKAFRLFDDDKTGKIS 108 (158)
T ss_pred HHHHHHHHhCCCCCCcCc
Confidence 356789999988877533
No 18
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.36 E-value=0.006 Score=47.81 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHH
Q 008339 389 RKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQV 442 (569)
Q Consensus 389 rraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~ 442 (569)
+++|+.+|.+ ++|.|+.+.|..+|+.+|+ +.+.++.+ .+.|.|.|++|...
T Consensus 2 ~~~F~~~D~~-~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~ 58 (67)
T cd00052 2 DQIFRSLDPD-GDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIA 58 (67)
T ss_pred hHHHHHhCCC-CCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHH
Confidence 5789999998 5999999999999999986 56555544 56899999999763
No 19
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=96.35 E-value=0.003 Score=60.87 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc--cCCCeeehHHHHHHH---hhcccccCCCCCCcCcC
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL--CGSGFIVWSEFWQVI---LDLDKSLGGLKDSTGLM 460 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m--e~~GIIL~~eF~~~~---~~~e~s~~~~k~~~~~~ 460 (569)
+..+.+|...|++ ..|||.-+.|.+.+..||-..++++||+| +..|=|-|.-||.-| +.-.+.+ ..
T Consensus 32 qEfKEAF~~mDqn-rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe--------~~ 102 (171)
T KOG0031|consen 32 QEFKEAFNLMDQN-RDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPE--------EV 102 (171)
T ss_pred HHHHHHHHHHhcc-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHH--------HH
Confidence 6788999999999 68999999999999999999999999998 889999999999844 3222221 14
Q ss_pred cceeeeEEeeCCccc
Q 008339 461 GKKVFDLYHFNGIAK 475 (569)
Q Consensus 461 ~~~~F~lyhYNGi~~ 475 (569)
...+|..||-+|-++
T Consensus 103 I~~AF~~FD~~~~G~ 117 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGK 117 (171)
T ss_pred HHHHHHhcCccCCCc
Confidence 577999999998886
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.02 E-value=0.014 Score=50.38 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhhcc
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILDLD 447 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~~e 447 (569)
..++++|+.+|.+ ++|+|+.+.|..+|+.+|+ ++++++.| .+.|.|.+++|+..+....
T Consensus 10 ~~l~~~F~~~D~d-~~G~Is~~el~~~l~~~~~--~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 10 AKYEQIFRSLDKN-QDGTVTGAQAKPILLKSGL--PQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHhCCC-CCCeEeHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 5789999999998 6999999999999999874 66666554 5689999999987544333
No 21
>PTZ00184 calmodulin; Provisional
Probab=96.02 E-value=0.0074 Score=53.56 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhhcccccCCCCCCcCc
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILDLDKSLGGLKDSTGL 459 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~ 459 (569)
.+.++.|+.+|.+ ++|.|+.++|..+|..++..+..+.+..+ .+.|.|.|++|+.......... ....
T Consensus 11 ~~~~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~-----~~~~ 84 (149)
T PTZ00184 11 AEFKEAFSLFDKD-GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-----DSEE 84 (149)
T ss_pred HHHHHHHHHHcCC-CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC-----cHHH
Confidence 5688999999998 59999999999999999998776555443 5789999999987543211100 0011
Q ss_pred CcceeeeEEeeCCccc
Q 008339 460 MGKKVFDLYHFNGIAK 475 (569)
Q Consensus 460 ~~~~~F~lyhYNGi~~ 475 (569)
..+..|..|+.||.++
T Consensus 85 ~~~~~F~~~D~~~~g~ 100 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGF 100 (149)
T ss_pred HHHHHHHhhCCCCCCe
Confidence 3467899999888775
No 22
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.87 E-value=0.019 Score=42.35 Aligned_cols=54 Identities=31% Similarity=0.570 Sum_probs=45.5
Q ss_pred HHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHH
Q 008339 388 IRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQV 442 (569)
Q Consensus 388 arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~ 442 (569)
++++|+.+|.+ ++|.|+.+.+..+|+.++...+.+.+..+ .+.|.|-+++|...
T Consensus 2 ~~~~f~~~d~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKD-GDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCC-CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 57789999998 58999999999999999998887665443 56899999999754
No 23
>PF14658 EF-hand_9: EF-hand domain
Probab=95.70 E-value=0.013 Score=48.95 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=42.9
Q ss_pred HHHHhcCCCCCCCceehhhHHHHHHHhcC-CCChhhhhcc------cCC-CeeehHHHHHH
Q 008339 390 KAFDAQDKSGGGGFISVEGFQQVIRDTNI-RLPREKLDHL------CGS-GFIVWSEFWQV 442 (569)
Q Consensus 390 raFd~fD~e~gnGFIs~~~L~~VL~~Lgl-~l~~~~Ld~m------e~~-GIIL~~eF~~~ 442 (569)
.+|++||.+ ..|.|++..|..+|++++- ...+.+|+.+ ++. |.|.++.|+..
T Consensus 2 ~~F~~fD~~-~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 2 TAFDAFDTQ-KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred cchhhcCCc-CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 479999999 6999999999999999999 5555444443 677 99999999753
No 24
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.55 E-value=0.021 Score=54.37 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc-----cCCCeeehHHHHHHHh
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL-----CGSGFIVWSEFWQVIL 444 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m-----e~~GIIL~~eF~~~~~ 444 (569)
..-+....||++ |||+|+..+|..||-.||-+|++++.+.+ ++.|-|.++.|.+.++
T Consensus 89 dfvegLrvFDke-g~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 89 DFVEGLRVFDKE-GNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHhhccc-CCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHHHHHHHHh
Confidence 455567889999 69999999999999999999999998876 6689999999998775
No 25
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=95.52 E-value=0.017 Score=40.55 Aligned_cols=28 Identities=32% Similarity=0.657 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCCCCceehhhHHHHHHHh
Q 008339 388 IRKAFDAQDKSGGGGFISVEGFQQVIRDT 416 (569)
Q Consensus 388 arraFd~fD~e~gnGFIs~~~L~~VL~~L 416 (569)
++++|+.||.+ ++|+|+.+.|..+|+.|
T Consensus 2 ~~~~F~~~D~d-~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKD-GDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CCCcCCHHHHHHHHHhC
Confidence 67899999999 69999999999999876
No 26
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=95.44 E-value=0.01 Score=56.46 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhc----c----cCCCeeehHHHHHHHhhcccccCCCCCCc
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDH----L----CGSGFIVWSEFWQVILDLDKSLGGLKDST 457 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~----m----e~~GIIL~~eF~~~~~~~e~s~~~~k~~~ 457 (569)
..++.+|+.||.. |.|-|+..+.++|||+||.+.+..++.. . .+.--|.|++|+--|-+..+.. +..
T Consensus 11 ~e~ke~F~lfD~~-gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk----~q~ 85 (152)
T KOG0030|consen 11 EEFKEAFLLFDRT-GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK----DQG 85 (152)
T ss_pred HHHHHHHHHHhcc-CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc----ccC
Confidence 6799999999999 5899999999999999999988765432 1 2446788999876554444332 211
Q ss_pred C-cCcceeeeEEeeCCccc
Q 008339 458 G-LMGKKVFDLYHFNGIAK 475 (569)
Q Consensus 458 ~-~~~~~~F~lyhYNGi~~ 475 (569)
. ..--+.+++||..|++.
T Consensus 86 t~edfvegLrvFDkeg~G~ 104 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGT 104 (152)
T ss_pred cHHHHHHHHHhhcccCCcc
Confidence 1 12355678888888774
No 27
>PTZ00183 centrin; Provisional
Probab=95.40 E-value=0.034 Score=50.24 Aligned_cols=57 Identities=28% Similarity=0.473 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVI 443 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~ 443 (569)
..++.+|+.+|.+ ++|+|+.+.|..+|..+|..+++++++.+ .+.|.|.|++|..-+
T Consensus 90 ~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDD-KTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCC-CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4688999999999 69999999999999999998888777654 468999999997543
No 28
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=95.29 E-value=0.0072 Score=38.61 Aligned_cols=17 Identities=53% Similarity=0.726 Sum_probs=15.0
Q ss_pred CcchHHHHHHHHhhccC
Q 008339 3 DQEDEDLKMALRMSMQN 19 (569)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (569)
+.||++||+||+||||.
T Consensus 1 ~~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 1 MDEDEDLQRALEMSLEE 17 (18)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhhcc
Confidence 46899999999999974
No 29
>PTZ00184 calmodulin; Provisional
Probab=95.01 E-value=0.059 Score=47.81 Aligned_cols=56 Identities=32% Similarity=0.625 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQV 442 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~ 442 (569)
..++.+|+.||.+ ++|+|+.+.+..+|+.+|..++.++++.+ .+.|.|-|++|...
T Consensus 84 ~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 84 EEIKEAFKVFDRD-GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHHHHhhCCC-CCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 4678899999998 58999999999999999988888766554 57899999999754
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.98 E-value=0.049 Score=41.82 Aligned_cols=43 Identities=33% Similarity=0.661 Sum_probs=38.4
Q ss_pred CCceehhhHHHHHHHhcCC-CChhhhhcc------cCCCeeehHHHHHHH
Q 008339 401 GGFISVEGFQQVIRDTNIR-LPREKLDHL------CGSGFIVWSEFWQVI 443 (569)
Q Consensus 401 nGFIs~~~L~~VL~~Lgl~-l~~~~Ld~m------e~~GIIL~~eF~~~~ 443 (569)
+|+|+.+.|..+|+.+|+. +++++++.+ .+.|.|-|+||...+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 6999999999999999999 999887664 789999999998754
No 31
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=94.64 E-value=0.11 Score=45.14 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHHh-cCCCCCCCceehhhHHHHHHHhc-----CCCChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 379 NELEERESHIRKAFDA-QDKSGGGGFISVEGFQQVIRDTN-----IRLPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 379 ~~~~~~~~~arraFd~-fD~e~gnGFIs~~~L~~VL~~Lg-----l~l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
|+++.....+.++|+. +|.++++++|+.++|..+|.... -..++.+++.| .+.|-|-++||++.+..
T Consensus 2 ~~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 2 TETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3455666889999999 66764445999999999998862 23344444443 67899999999986554
No 32
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=94.51 E-value=0.081 Score=45.46 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCCceehhhHHHHHH-HhcCCCC----hhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 381 LEERESHIRKAFDAQDKSG-GGGFISVEGFQQVIR-DTNIRLP----REKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 381 ~~~~~~~arraFd~fD~e~-gnGFIs~~~L~~VL~-~Lgl~l~----~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
+|.....+.+.|..|+... .+|+|+.+.|..+|. .++-.++ +++++.| .+.|.|-+++|++-+..
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4455577888999999653 579999999999996 5665554 6666654 57899999999975543
No 33
>PLN02964 phosphatidylserine decarboxylase
Probab=93.94 E-value=0.041 Score=63.25 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhc-CCCChhh---hhcc------cCCCeeehHHHHHHHhhcccccCCCCC
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTN-IRLPREK---LDHL------CGSGFIVWSEFWQVILDLDKSLGGLKD 455 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lg-l~l~~~~---Ld~m------e~~GIIL~~eF~~~~~~~e~s~~~~k~ 455 (569)
+.++++|+.+|++ ++|+| |+.+|++|| ...++++ ++.| ++.|-|.++||.+.+-.... .+
T Consensus 143 ~elkeaF~lfD~d-gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~-----~~ 212 (644)
T PLN02964 143 ESACESFDLLDPS-SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN-----LV 212 (644)
T ss_pred HHHHHHHHHHCCC-CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc-----CC
Confidence 6688899999999 58997 999999999 4666654 3333 67999999999875543211 11
Q ss_pred CcCcCcceeeeEEeeCCccccc
Q 008339 456 STGLMGKKVFDLYHFNGIAKSD 477 (569)
Q Consensus 456 ~~~~~~~~~F~lyhYNGi~~s~ 477 (569)
+..+..+.|.+||.||.++=+
T Consensus 213 -seEEL~eaFk~fDkDgdG~Is 233 (644)
T PLN02964 213 -AANKKEELFKAADLNGDGVVT 233 (644)
T ss_pred -CHHHHHHHHHHhCCCCCCcCC
Confidence 122578899999999877533
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=92.78 E-value=0.17 Score=49.23 Aligned_cols=54 Identities=30% Similarity=0.389 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFW 440 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~ 440 (569)
+.++++|+.+|-+ ++|-|+...|..|+++||-++++++|.+| ++.|-|--.+|+
T Consensus 106 eEi~~afrl~D~D-~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~ 165 (172)
T KOG0028|consen 106 EEIKKAFRLFDDD-KTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFI 165 (172)
T ss_pred HHHHHHHHccccc-CCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHH
Confidence 5799999999999 59999999999999999999999999977 678999999986
No 35
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=92.65 E-value=0.058 Score=37.47 Aligned_cols=18 Identities=50% Similarity=0.816 Sum_probs=15.9
Q ss_pred cchHHHHHHHHhhccCCC
Q 008339 4 QEDEDLKMALRMSMQNTP 21 (569)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (569)
.|||+||+|++||+|...
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e 18 (26)
T smart00726 1 DEDEDLQLALELSLQEAE 18 (26)
T ss_pred ChHHHHHHHHHHhHHHhh
Confidence 489999999999999774
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=91.10 E-value=0.46 Score=46.18 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
..+..+|+.||.+ +.|.|.-+.|.++|-..|-++++++++.| +..|-|.+.+|...+-+
T Consensus 101 ~~I~~AF~~FD~~-~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 101 EVILNAFKTFDDE-GSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHhcCcc-CCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 6899999999999 69999999999999999999999999886 56899999999876543
No 37
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=90.77 E-value=0.34 Score=49.12 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
+=+.+|..||.+ ++|-|..++|.+.|.+||-.+++.-++-+ .+.|-|.+++|.+....
T Consensus 125 ~Wr~vF~~~D~D-~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 125 QWRNVFRTYDRD-RSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHhcccC-CCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 446699999999 69999999999999999999999665543 45999999999884433
No 38
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=90.05 E-value=0.53 Score=46.53 Aligned_cols=59 Identities=34% Similarity=0.504 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcC-CCC--hhhhhcc----------cCCCeeehHHHHHHHhh
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNI-RLP--REKLDHL----------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl-~l~--~~~Ld~m----------e~~GIIL~~eF~~~~~~ 445 (569)
.+++=+|+.||.+ ++|||+-+.|.++++.+-- ..+ ++.+..| ++.|.|-++||...+..
T Consensus 104 ~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 104 EKLRFAFRVYDLD-GDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 5899999999999 6999999999999998755 334 3333332 78999999999886654
No 39
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=88.56 E-value=0.53 Score=31.91 Aligned_cols=25 Identities=40% Similarity=0.720 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCCCCCceehhhHHHHH
Q 008339 388 IRKAFDAQDKSGGGGFISVEGFQQVI 413 (569)
Q Consensus 388 arraFd~fD~e~gnGFIs~~~L~~VL 413 (569)
++++|+.+|.+ ++|.|+.+++..++
T Consensus 1 l~~~F~~~D~d-~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTD-GDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTT-SSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCC-CCCcCCHHHHHHHC
Confidence 46789999999 69999999998875
No 40
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=0.014 Score=62.70 Aligned_cols=248 Identities=16% Similarity=0.083 Sum_probs=137.2
Q ss_pred cCCCCCCHHHHHHHHhcccCCcccccchhhhhhcCceee-cCCCCceeEEEccCCcchHHHHHHHH-HHHHHH-------
Q 008339 118 PKEANLGIEEANQLFSMMFGSEVSKDILAQWSNQGIRFS-SDSETSMGLVQHEGGPCGVLAAIQVI-LQFLIL------- 188 (569)
Q Consensus 118 ~~G~pIs~e~a~eLr~lLFG~~~~~~~~~~W~~QGF~Fs-~~~~layGLvQ~~GGPCGVLAaVQAf-LK~LLF------- 188 (569)
-.++++....|...+...|+-..- .++.+|.+..|.|. +.+++.|+++-...--. +.-++|.| |+|+||
T Consensus 37 ~lvq~eggpcavia~vqafllk~i-lm~~e~~~~s~~~g~~~~el~~h~lsd~~~s~-~~~~~~~~~Lv~lL~g~tte~~ 114 (449)
T KOG2871|consen 37 ALVQPEGGPCAVIAPVQAFLLKAI-LMRAEWLQTSFCSGAPKEELLYHLLSDILASR-LCSVVQGYVLVYLLRGRTTEEV 114 (449)
T ss_pred cccccCCCceeeehhHHHHHHHHH-hcCccccccccccCchHHHHHHHhhhhHhHhh-hhhhccceEEEEeeccCchhhh
Confidence 345677777788888888887653 56789998899988 46678788775554443 66679999 999999
Q ss_pred ---------------HHHHHHHHHHHHhcCCCCceEEEeec-cccccccc-c----------cceeEE--EEeec-----
Q 008339 189 ---------------VALVKSMGEILFSCGSNKRAVLAKAL-EGLSIESG-S----------DMQKVI--RVDAY----- 234 (569)
Q Consensus 189 ---------------~aL~~ALa~ILw~ag~~~~avV~~~~-e~~~~~~~-~----------~~~e~l--~~~~f----- 234 (569)
+||..+.-+|......+-.+.-..+. ....+.+. . .+.++. -+|-+
T Consensus 115 ASlt~~~~~SS~q~eeA~~s~~L~ie~~~~~~ls~~~~~~~l~~~~f~~~a~~~~~~~~~~~~~~~t~GvLLFLySalLT 194 (449)
T KOG2871|consen 115 ASLTGPLAASSDQVEEALFSAALEIERTISDKLSVTMFHPSLDEVFFDHSACYFHDSVTEYFTEEETPGVLLFLYSALLT 194 (449)
T ss_pred hhccCccccchHHHHHHHHhcchhhhhhhhcccCHHHHhHhhhheeccchHHHHHHHHHHHHhhhcccchHHHHHHHHHh
Confidence 56655555665433222111111100 00111110 0 001110 00100
Q ss_pred CCHHHHHHHHHHhc-cccccc--chhHHHHHHHHHhcchhHHhh-ccCCCCCCcccCCCCcchHHhHHhhhcCccccccc
Q 008339 235 TSQATALQKLEEAL-PVFRSR--MGAMLFLISALLSRGLDYVQA-DRDDPTPSLVTAPFGHASQEIVNLLLCGQAVPNVF 310 (569)
Q Consensus 235 ~s~edl~~~l~~~l-~~f~~~--~GVlLFLYSvILSRGie~V~~-DmDdp~~~LI~~~~G~cSQeLVNLLLTGrAvsnVf 310 (569)
..++.++..+.+.- +..+++ +|-..++-=++--|-+-+|-+ ++|.....| +|-|-|.-|- +||+--. +
T Consensus 195 rgle~V~aDiddas~plits~~g~gsq~iVnLLLtGrAvpnV~dg~~dvggm~l----~gI~e~~dvg-fltlle~---l 266 (449)
T KOG2871|consen 195 RGLEKVRADIDDASEPLITSSYGHGSQSIVNLLLTGRAVPNVWDGVVDVGGMKL----YGIPEQGDVG-FLTLLEL---L 266 (449)
T ss_pred hhHHHhhhccccCCCCcccCCCCcchHHHHHHHHccccccccccCccccCccee----eccccccchh-HHHHHHH---H
Confidence 23344444443332 344443 565555544555677888865 566655554 4545554444 2222110 0
Q ss_pred CCccccCCceeeeccccCCceeeeeecccCCccccccCCCCCCCceEEEeeCCceeEEEecCcCccccchHHHHHHHHHH
Q 008339 311 DGRMDLGGGMCLKGISTSVEVGFLTLLESLNFCKVGQHLKCPKWPIWVVGSESHYTVLFALDTSVQDENELEERESHIRK 390 (569)
Q Consensus 311 DG~~dlGg~l~LkGI~~rs~IGfLtl~E~~~~c~VGs~lKtP~~PIWVv~se~HysVLF~~~~~l~~~~~~~~~~~~arr 390 (569)
| -+.||= .+.+ --+.++.+++|.+|+|+..++.|+.+-|..+.++- |+.+++.
T Consensus 267 ~----------------~ckvgs--~lk~--pr~Piwv~gSeth~tvlfs~d~~l~~~~~~s~q~r-------R~f~a~d 319 (449)
T KOG2871|consen 267 R----------------YCKVGS--ALKQ--PRQPIWVLGSETHLTVLFSCDGHLVVPENPSEQLR-------RNFHAYD 319 (449)
T ss_pred H----------------HHHHHH--hhcC--CCCceeEecCCCceEEEEecCccccCCCCCCHHHH-------hhhhccC
Confidence 0 001110 0111 12589999999999999999999999999987762 3355555
Q ss_pred HHHhcCCCCCCCc
Q 008339 391 AFDAQDKSGGGGF 403 (569)
Q Consensus 391 aFd~fD~e~gnGF 403 (569)
-|+-.+.++ +++
T Consensus 320 ~~d~nfis~-s~~ 331 (449)
T KOG2871|consen 320 PEDNNFISC-SGL 331 (449)
T ss_pred ccCCCeeec-HHH
Confidence 555555553 443
No 41
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=87.49 E-value=0.61 Score=29.12 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCCCceehhhHHHHHHHh
Q 008339 388 IRKAFDAQDKSGGGGFISVEGFQQVIRDT 416 (569)
Q Consensus 388 arraFd~fD~e~gnGFIs~~~L~~VL~~L 416 (569)
.+++|+.+|.+ ++|.|+.+.|..+++.+
T Consensus 2 ~~~~f~~~d~~-~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 2 LKEAFRLFDKD-GDGKIDFEEFKDLLKAL 29 (29)
T ss_pred HHHHHHHHCCC-CCCcEeHHHHHHHHHhC
Confidence 56799999998 58999999999988754
No 42
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=87.25 E-value=0.97 Score=49.76 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhc----c--cCCCeeehHHHHHHHh
Q 008339 383 ERESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDH----L--CGSGFIVWSEFWQVIL 444 (569)
Q Consensus 383 ~~~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~----m--e~~GIIL~~eF~~~~~ 444 (569)
..+.+..+.|+..|-+ -||-|..+++.+.|+++|++++.+++.. | .+.++|.|+||=+..+
T Consensus 79 ~~E~~l~~~F~~iD~~-hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLE-HDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HhHHHHHHHHhhhccc-cCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 3457888999999999 5999999999999999999999877654 3 7899999999865443
No 43
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=86.27 E-value=1.5 Score=40.13 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhc------ccCCCeeehHHHHHHHhh
Q 008339 383 ERESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDH------LCGSGFIVWSEFWQVILD 445 (569)
Q Consensus 383 ~~~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~------me~~GIIL~~eF~~~~~~ 445 (569)
.....+.-+|+.+|.+ ++|+|+.+.|..++ +..++..++. ..+.|.|-++||...|+.
T Consensus 45 ~~~~~l~w~F~~lD~d-~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGN-YDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCC-CCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 3447789999999999 69999999999886 2222322222 278999999999987743
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=82.88 E-value=0.89 Score=45.00 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhh-hhcc--cCCCe-eehHHHHH---HHhhcccccCCCCCCcC
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREK-LDHL--CGSGF-IVWSEFWQ---VILDLDKSLGGLKDSTG 458 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~-Ld~m--e~~GI-IL~~eF~~---~~~~~e~s~~~~k~~~~ 458 (569)
..+-..|..+|..++.|+|+.+++..+. .+..++-.+. ++-. .+.|. |-+.+|.. .|.+.....
T Consensus 33 ~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~-------- 103 (187)
T KOG0034|consen 33 ERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKR-------- 103 (187)
T ss_pred HHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHH--------
Confidence 5677889999998668999999999998 5655533332 2222 55777 99999987 444322221
Q ss_pred cCcceeeeEEeeCCccc
Q 008339 459 LMGKKVFDLYHFNGIAK 475 (569)
Q Consensus 459 ~~~~~~F~lyhYNGi~~ 475 (569)
...+-+|++||.|+.|.
T Consensus 104 ~Kl~faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGF 120 (187)
T ss_pred HHHHHHHHHhcCCCCCc
Confidence 13466999999999996
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=82.77 E-value=1.1 Score=49.45 Aligned_cols=59 Identities=22% Similarity=0.372 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChh-----hhhcc--cCCCeeehHHHHH
Q 008339 382 EERESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPRE-----KLDHL--CGSGFIVWSEFWQ 441 (569)
Q Consensus 382 ~~~~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~-----~Ld~m--e~~GIIL~~eF~~ 441 (569)
++|+.++++.|+.+|.+ ++|+++..+|.+-|..|++.-+.. .+..| ...|-+.+.||..
T Consensus 10 ~er~~r~~~lf~~lD~~-~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSK-NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred HHHHHHHHHHHHHhccC-CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 56789999999999999 599999999999999999972222 22222 5688888888843
No 46
>PLN02964 phosphatidylserine decarboxylase
Probab=73.66 E-value=6.6 Score=45.71 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc------cCCCeeehHHHHHHHhh
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL------CGSGFIVWSEFWQVILD 445 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m------e~~GIIL~~eF~~~~~~ 445 (569)
-++++|+.+|.+ ++|.|+-++|..+|..++-..+++++..+ ++.|.|-.+||.+.+-.
T Consensus 180 fi~~mf~~~D~D-gdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYD-EDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCC-CCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 488999999999 58999999999999999876677766553 78999999999765433
No 47
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=70.00 E-value=6.8 Score=43.90 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHHHhcC----CCChhhhhc------ccCCCeeehHHHHHHHhh
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIRDTNI----RLPREKLDH------LCGSGFIVWSEFWQVILD 445 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl----~l~~~~Ld~------me~~GIIL~~eF~~~~~~ 445 (569)
..+-.|...|.+ .+|+|+.+++.+..+-|+- .++.+.+.. +...|.|.+|||+..|--
T Consensus 548 ~LetiF~~iD~D-~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 548 SLETIFNIIDAD-NSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhccC-CCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 456679999999 5999999999998887654 344544333 267999999999987643
No 48
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=67.09 E-value=13 Score=37.17 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcc-------cCCCeeehHHHHHHHhhcccccCCCCCCcCc
Q 008339 387 HIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHL-------CGSGFIVWSEFWQVILDLDKSLGGLKDSTGL 459 (569)
Q Consensus 387 ~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~m-------e~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~ 459 (569)
.++.-+..|=.++-+|-++.+++..+++...-..+.+.+... ...|-|.+.||+..+....+.. ...
T Consensus 27 ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt------~ee 100 (193)
T KOG0044|consen 27 EIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT------LEE 100 (193)
T ss_pred HHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc------HHH
Confidence 345555555566678999999999999999986666655442 6799999999987554322211 011
Q ss_pred CcceeeeEEeeCCccccc
Q 008339 460 MGKKVFDLYHFNGIAKSD 477 (569)
Q Consensus 460 ~~~~~F~lyhYNGi~~s~ 477 (569)
.++=+|++||-||.|+-.
T Consensus 101 kl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred HhhhhheeecCCCCceEc
Confidence 345679999999999643
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=61.27 E-value=13 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.592 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRD 415 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~ 415 (569)
+.++..|..+|.+ ++|+|+-+++-.+|..
T Consensus 25 ~e~~~l~~~~D~~-~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTD-GDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTS-SSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccC-CCCCCCHHHHHHHHHh
Confidence 4699999999999 5999999999988875
No 50
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=54.76 E-value=17 Score=38.21 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=53.7
Q ss_pred CceeEEEecCcCcccc-chHHHHHHHHHHHHHhcCCCCCCCceehhhHHHHHHHh-cC----CCChh-----hhhcccCC
Q 008339 363 SHYTVLFALDTSVQDE-NELEERESHIRKAFDAQDKSGGGGFISVEGFQQVIRDT-NI----RLPRE-----KLDHLCGS 431 (569)
Q Consensus 363 ~HysVLF~~~~~l~~~-~~~~~~~~~arraFd~fD~e~gnGFIs~~~L~~VL~~L-gl----~l~~~-----~Ld~me~~ 431 (569)
-|--|+|+.|-.-.++ .+......++...|..-|-+ ..+||+...+++-+.+- .- .+.+. ..|+ .+.
T Consensus 77 FhQEvflgkdLggfDedaeprrsrrklmviFsKvDVN-tDrkisAkEmqrwImektaEHfqeameeSkthFraVDp-dgD 154 (362)
T KOG4251|consen 77 FHQEVFLGKDLGGFDEDAEPRRSRRKLMVIFSKVDVN-TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDP-DGD 154 (362)
T ss_pred hhhhheeccCCCCcccccchhHHHHHHHHHHhhcccC-ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCC-CCC
Confidence 3666888877665543 23333346777789999998 58999999998866531 11 11111 1343 789
Q ss_pred CeeehHHHHHHHh
Q 008339 432 GFIVWSEFWQVIL 444 (569)
Q Consensus 432 GIIL~~eF~~~~~ 444 (569)
|-|.|+||.-.|+
T Consensus 155 GhvsWdEykvkFl 167 (362)
T KOG4251|consen 155 GHVSWDEYKVKFL 167 (362)
T ss_pred CceehhhhhhHHH
Confidence 9999999987776
No 51
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=53.67 E-value=8 Score=39.52 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcC-CCChh-------hhhcccCCCeeehHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNI-RLPRE-------KLDHLCGSGFIVWSEFWQ 441 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl-~l~~~-------~Ld~me~~GIIL~~eF~~ 441 (569)
..+-..|...|.+ .+|+|+.++|++.|...+= .+..+ .+|. +..|-|-++||..
T Consensus 57 ~~~~~~f~~vD~d-~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~-~~~G~i~f~EF~~ 118 (221)
T KOG0037|consen 57 PQLAGWFQSVDRD-RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR-DNSGTIGFKEFKA 118 (221)
T ss_pred HHHHHHHHhhCcc-ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-CCCCccCHHHHHH
Confidence 4688889999999 6999999999999874433 23333 3344 7899999999943
No 52
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=52.79 E-value=11 Score=41.32 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhcccCCCeeehHHHHHHH
Q 008339 385 ESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDHLCGSGFIVWSEFWQVI 443 (569)
Q Consensus 385 ~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~me~~GIIL~~eF~~~~ 443 (569)
...++.+|+.||.+ |+|+|+.++|.. ....=+.+|. .+.|.|-+.||.+.+
T Consensus 333 ~~~l~~aF~~~D~d-gdG~Is~~E~~~------~~~~F~~~D~-d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 333 THAAQEIFRLYDLD-GDGFITREEWLG------SDAVFDALDL-NHDGKITPEEMRAGL 383 (391)
T ss_pred hHHHHHHHHHhCCC-CCCcCcHHHHHH------HHHHHHHhCC-CCCCCCcHHHHHHHH
Confidence 36678899999999 699999998832 1111134454 789999999997643
No 53
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=51.68 E-value=19 Score=36.87 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCC-------hhhhhcccCCCeeehHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLP-------REKLDHLCGSGFIVWSEFWQ 441 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~-------~~~Ld~me~~GIIL~~eF~~ 441 (569)
.-+...|+.||.+ -.|||+-..|..+|+.||-.=+ -+++|. +..|-|-+-+|+-
T Consensus 99 k~~~~~Fk~yDe~-rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVde-d~dgklSfreflL 159 (244)
T KOG0041|consen 99 KDAESMFKQYDED-RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDE-DFDGKLSFREFLL 159 (244)
T ss_pred HHHHHHHHHhccc-ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhc-ccccchhHHHHHH
Confidence 4577789999998 5899999999999999997311 133344 6799999999974
No 54
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.84 E-value=27 Score=33.04 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCCCceehhhHHHHHHHhcC----------CCChhhhhcc----------cCCCeeehHHHHHH
Q 008339 388 IRKAFDAQDKSGGGGFISVEGFQQVIRDTNI----------RLPREKLDHL----------CGSGFIVWSEFWQV 442 (569)
Q Consensus 388 arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl----------~l~~~~Ld~m----------e~~GIIL~~eF~~~ 442 (569)
-...|+.||.+ +|||+.--.|-..+--.-- .+++.+|..| .+.|+|.+.||++.
T Consensus 69 qfHYF~MHDld-knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 69 QFHYFSMHDLD-KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhhccC-cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34569999999 6999988777666543322 1334454433 57999999999864
No 55
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=50.47 E-value=26 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCCCCCceehhhHHHHH
Q 008339 384 RESHIRKAFDAQDKSGGGGFISVEGFQQVI 413 (569)
Q Consensus 384 ~~~~arraFd~fD~e~gnGFIs~~~L~~VL 413 (569)
....++.+|+.+|.+ ++|.|+-+.+...|
T Consensus 38 ~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 38 SDEMIDQIFREFDTD-GDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHTTT-SSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CcCCCcHHHHhccC
Confidence 346788889999999 69999999887764
No 56
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=49.16 E-value=31 Score=34.58 Aligned_cols=52 Identities=27% Similarity=0.322 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCC---Chhhhhc------ccCCCeeehHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRL---PREKLDH------LCGSGFIVWSEFWQ 441 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l---~~~~Ld~------me~~GIIL~~eF~~ 441 (569)
.-++++|..||.+ ++|+|+... .+.+|.+.+ .+++|+- ..+.|.|-++|++.
T Consensus 64 ~y~~~vF~~fD~~-~dg~i~F~E---fi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~ 124 (193)
T KOG0044|consen 64 KYAELVFRTFDKN-KDGTIDFLE---FICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLK 124 (193)
T ss_pred HHHHHHHHHhccc-CCCCcCHHH---HHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHH
Confidence 5789999999999 699998766 777777743 2344432 38899999999977
No 57
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=48.23 E-value=45 Score=30.09 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCChhhhhc------ccCCCeeehHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLPREKLDH------LCGSGFIVWSEFWQ 441 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~~~~Ld~------me~~GIIL~~eF~~ 441 (569)
.+-...|+..|+. +|+|+......+|..-|| +.+.|.. .++.|-+.++||.-
T Consensus 10 ~~y~~~F~~l~~~--~g~isg~~a~~~f~~S~L--~~~~L~~IW~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 10 QKYDQIFQSLDPQ--DGKISGDQAREFFMKSGL--PRDVLAQIWNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp HHHHHHHHCTSSS--TTEEEHHHHHHHHHHTTS--SHHHHHHHHHHH-SSSSSEEEHHHHHH
T ss_pred HHHHHHHHhcCCC--CCeEeHHHHHHHHHHcCC--CHHHHHHHHhhhcCCCCCcCCHHHHHH
Confidence 5677889999864 699999999999998877 5565544 38899999999965
No 58
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=47.49 E-value=19 Score=40.50 Aligned_cols=107 Identities=18% Similarity=0.369 Sum_probs=66.9
Q ss_pred eeeecccCCccccccCC---------CCCCCceEEEeeCCceeEEEecCcCccccchHHH-------HHHHHHHHHHhcC
Q 008339 333 FLTLLESLNFCKVGQHL---------KCPKWPIWVVGSESHYTVLFALDTSVQDENELEE-------RESHIRKAFDAQD 396 (569)
Q Consensus 333 fLtl~E~~~~c~VGs~l---------KtP~~PIWVv~se~HysVLF~~~~~l~~~~~~~~-------~~~~arraFd~fD 396 (569)
.||++-+-||.++||+- ++|+|=-+.+..-+|..- |-.-...+.++.... +....+++|+.||
T Consensus 396 vlTiFSASNYYe~GSNrGAYikl~~~~~PhfvQY~a~k~t~~~t-lrqR~~~vEeSAlk~Lrerl~s~~sdL~~eF~~~D 474 (631)
T KOG0377|consen 396 VLTIFSASNYYEIGSNRGAYIKLGNQLTPHFVQYQAAKQTKRLT-LRQRMGIVEESALKELRERLRSHRSDLEDEFRKYD 474 (631)
T ss_pred EEEEEeccchheecCCCceEEEeCCCCCchHHHHHhhhhhhhhh-HHHHhhHHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Confidence 47888888999998842 366655555444444332 222222334433222 2245678899999
Q ss_pred CCCCCCceehhhHHHHHHH-hcCCCCh----hhhhcccCCCeeehHHHHH
Q 008339 397 KSGGGGFISVEGFQQVIRD-TNIRLPR----EKLDHLCGSGFIVWSEFWQ 441 (569)
Q Consensus 397 ~e~gnGFIs~~~L~~VL~~-Lgl~l~~----~~Ld~me~~GIIL~~eF~~ 441 (569)
++ .+|.|+...-...|+. +|+++|= .+|-+....|-+-+..-++
T Consensus 475 ~~-ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~ 523 (631)
T KOG0377|consen 475 PK-KSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLD 523 (631)
T ss_pred hh-hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHH
Confidence 99 7999999999999875 5666553 4454455666666655443
No 59
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=42.23 E-value=79 Score=28.23 Aligned_cols=61 Identities=18% Similarity=0.384 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceehhhHHHHHHH-hcC----CCChh-------hhhcccCCCeeehHHHHHHHh
Q 008339 381 LEERESHIRKAFDAQDKSGGGGFISVEGFQQVIRD-TNI----RLPRE-------KLDHLCGSGFIVWSEFWQVIL 444 (569)
Q Consensus 381 ~~~~~~~arraFd~fD~e~gnGFIs~~~L~~VL~~-Lgl----~l~~~-------~Ld~me~~GIIL~~eF~~~~~ 444 (569)
.|.....+-.+|..|. |+.+-++-.+|.++|.. |.- .-+++ .||. .+.|-|.|.|||.-+.
T Consensus 3 LE~ai~~lI~~FhkYa--G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~-n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 3 LEHSMEKMMLTFHKFA--GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD-CRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHHHHHc--CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHH
Confidence 4455567888999998 45678999999998843 321 11233 2343 7899999999998443
No 60
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=39.07 E-value=38 Score=33.22 Aligned_cols=61 Identities=28% Similarity=0.482 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCC-CChhhh--------hc--ccCCCeeehHHHHHHHhh
Q 008339 384 RESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIR-LPREKL--------DH--LCGSGFIVWSEFWQVILD 445 (569)
Q Consensus 384 ~~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~-l~~~~L--------d~--me~~GIIL~~eF~~~~~~ 445 (569)
|.-++..+|+.||++ +.+||--..|.+.+..|--. +++++. ++ +++.|-+-+.+|=..++.
T Consensus 106 rdlK~~YAFkIYDfd-~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 106 RDLKAKYAFKIYDFD-GDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHhhhhheeEEeecC-CCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 457899999999999 58999999999999887653 444332 21 478999999999776653
No 61
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=38.68 E-value=50 Score=37.99 Aligned_cols=61 Identities=20% Similarity=0.492 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCCCC---hhhhhcc------cCCCeeehHHHHHHHhhccc
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIRLP---REKLDHL------CGSGFIVWSEFWQVILDLDK 448 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~l~---~~~Ld~m------e~~GIIL~~eF~~~~~~~e~ 448 (569)
......|...| + ++|||+...|.+++...+.... .++.+.+ ...|-|.+++|+.-|+....
T Consensus 19 ~~l~~kF~~~d-~-~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 19 RELKEKFNKLD-D-QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHhhc-C-CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 45677899999 5 6999999999999999999752 3443332 67899999999998876544
No 62
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=36.42 E-value=50 Score=26.67 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCCCceehhhHHHHHHHh
Q 008339 385 ESHIRKAFDAQDKSGGGGFISVEGFQQVIRDT 416 (569)
Q Consensus 385 ~~~arraFd~fD~e~gnGFIs~~~L~~VL~~L 416 (569)
+..|+..|+..|.+ ++|.+..+++....+.|
T Consensus 20 ~~yA~~LFq~~D~s-~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 20 DEYARQLFQECDKS-QSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHH-SS-SSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-CCCCccHHHHHHHHHHh
Confidence 36899999999999 59999999999988876
No 63
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=33.07 E-value=78 Score=25.61 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=26.9
Q ss_pred eehhhHHHHHHHhcCCCChhh-------hhcccCCCeeehHHHHHHH
Q 008339 404 ISVEGFQQVIRDTNIRLPREK-------LDHLCGSGFIVWSEFWQVI 443 (569)
Q Consensus 404 Is~~~L~~VL~~Lgl~l~~~~-------Ld~me~~GIIL~~eF~~~~ 443 (569)
++-+.+..+|+.+||.+++.- -|. .+.|-+.-+||-..|
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDK-SQSGRLEGEEFEEFY 47 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-S-SSSSEBEHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcc-cCCCCccHHHHHHHH
Confidence 467889999999999988843 344 789999999997544
No 64
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=51 Score=32.08 Aligned_cols=36 Identities=42% Similarity=0.471 Sum_probs=23.2
Q ss_pred ccCCCCCCccccchhhhhcCCCCChHHHHHHHHHHHH
Q 008339 17 MQNTPPEPKRSKQREAAAAAPLASPEDCRRLQRELMA 53 (569)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (569)
+|+.|+.+.-+|...|+.+. .+.---.+|||.|||.
T Consensus 5 ~~n~~a~~~~sk~~a~~m~v-~~~~~V~KRLq~ELm~ 40 (175)
T KOG0421|consen 5 NQNTPATTNGSKQSAAPMAV-VDGHSVTKRLQSELMG 40 (175)
T ss_pred cCCCCCCCCcccCCCCCccc-ccCchHHHHHHHHHHH
Confidence 46677777666666543332 2233357899999996
No 65
>KOG2427 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=35 Score=37.72 Aligned_cols=24 Identities=38% Similarity=0.645 Sum_probs=21.1
Q ss_pred eEEEccCCcchHHHHHHHH-HHHHH
Q 008339 164 GLVQHEGGPCGVLAAIQVI-LQFLI 187 (569)
Q Consensus 164 GLvQ~~GGPCGVLAaVQAf-LK~LL 187 (569)
=|.|..+|||.+||-.-+. ||..+
T Consensus 29 IllQn~nGpCpLiAl~NvLilk~~~ 53 (391)
T KOG2427|consen 29 ILLQNENGPCPLIALCNVLILKPNL 53 (391)
T ss_pred EEEecCCCCcchHHHhHHHhccccc
Confidence 3899999999999999998 88655
No 66
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=28.42 E-value=44 Score=38.21 Aligned_cols=25 Identities=44% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHh
Q 008339 38 LASPEDCRRLQRELMAAAAEKRMKE 62 (569)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (569)
.-+||+-+|+-||-||+|||+||..
T Consensus 565 sl~~e~r~r~~re~ra~aa~~rm~~ 589 (591)
T KOG2505|consen 565 SLLPETRFRYSRESRACAAEHRMAN 589 (591)
T ss_pred ccCchhhHHHHHHHHHHHHHHhhcc
Confidence 4488999999999999999999964
No 67
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=27.71 E-value=82 Score=22.59 Aligned_cols=27 Identities=30% Similarity=0.510 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCCCCCCceehhhHHHHH
Q 008339 386 SHIRKAFDAQDKSGGGGFISVEGFQQVI 413 (569)
Q Consensus 386 ~~arraFd~fD~e~gnGFIs~~~L~~VL 413 (569)
..++++|+.+|.+ ++|.|+.+++..++
T Consensus 36 ~~~~~~~~~~~~~-~~~~l~~~ef~~~~ 62 (63)
T cd00051 36 EEIDEMIREVDKD-GDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHhCCC-CCCeEeHHHHHHHh
Confidence 4577899999998 58999999887764
No 68
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=26.73 E-value=36 Score=33.72 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008339 43 DCRRLQRELMAAAAEKRMK 61 (569)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~ 61 (569)
..-.-.||+.|+|||+|+.
T Consensus 168 ~~~~~~Re~~a~AAerR~~ 186 (186)
T PF08325_consen 168 AQPKSPREAAAAAAERRLR 186 (186)
T ss_pred CCCcCHHHHHHHHHHhhcC
Confidence 3456789999999999974
No 69
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.22 E-value=2e+02 Score=30.96 Aligned_cols=29 Identities=41% Similarity=0.541 Sum_probs=21.3
Q ss_pred cCCCCCh----HHHHHHHHHHHHHHHHHHHHhc
Q 008339 35 AAPLASP----EDCRRLQRELMAAAAEKRMKEA 63 (569)
Q Consensus 35 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 63 (569)
-.|.++| .+.++.|+||.+-.+|-||+++
T Consensus 49 ~~P~~~~~~~a~~~~~kq~eL~~rqeEL~Rke~ 81 (313)
T KOG3088|consen 49 DIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQ 81 (313)
T ss_pred ccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455552 3678889999998888888776
No 70
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=85 Score=34.02 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCCCCCCceehhhHHHHHHHhcCC-CCh------hhhhcccCCCeeehHHHHHHHhhc----------c
Q 008339 385 ESHIRKAFDAQDKSGGGGFISVEGFQQVIRDTNIR-LPR------EKLDHLCGSGFIVWSEFWQVILDL----------D 447 (569)
Q Consensus 385 ~~~arraFd~fD~e~gnGFIs~~~L~~VL~~Lgl~-l~~------~~Ld~me~~GIIL~~eF~~~~~~~----------e 447 (569)
..+..+.|.+.|-+ +.|||+...|...+.+---+ +.. ++.+. ...|+|-|+++...+... +
T Consensus 76 ~~rl~~l~~~iD~~-~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~-~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 76 QERLGKLVPKIDSD-SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDK-NKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred HHHHHHHHhhhcCC-CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccceeeHHHhhhhhhhcccCccccccch
Confidence 36888999999955 78999999999876543221 111 22343 689999999998755421 1
Q ss_pred cccCCCCCCcCcCcceeeeEEeeCCccccc
Q 008339 448 KSLGGLKDSTGLMGKKVFDLYHFNGIAKSD 477 (569)
Q Consensus 448 ~s~~~~k~~~~~~~~~~F~lyhYNGi~~s~ 477 (569)
+...+ -....--++.|.+-++||.+.-+
T Consensus 154 ~~~~~--~km~~rDe~rFk~AD~d~dg~lt 181 (325)
T KOG4223|consen 154 DNEEY--KKMIARDEERFKAADQDGDGSLT 181 (325)
T ss_pred hcHHH--HHHHHHHHHHHhhcccCCCCccc
Confidence 11000 00000136789999999987543
No 71
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=22.72 E-value=71 Score=31.14 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=43.1
Q ss_pred ecCCHHHHHHHHHHhcccccccc-hhHHHHHHHHHhcchhHHhhccCCCCCCcccCCCCcchHHhHHhhhcCccccccc
Q 008339 233 AYTSQATALQKLEEALPVFRSRM-GAMLFLISALLSRGLDYVQADRDDPTPSLVTAPFGHASQEIVNLLLCGQAVPNVF 310 (569)
Q Consensus 233 ~f~s~edl~~~l~~~l~~f~~~~-GVlLFLYSvILSRGie~V~~DmDdp~~~LI~~~~G~cSQeLVNLLLTGrAvsnVf 310 (569)
.++.+..+..++.+++......+ ...... .|-+.++.+++.+. ..++-..++|.+|++||.+.+.+-
T Consensus 25 ~~~~i~~ll~yi~~~l~~i~~~w~~~~~~~-----~~~l~~~~~~l~~~------~~~~~~~~el~~lLltG~~s~~l~ 92 (210)
T PF12896_consen 25 KSSQIQSLLRYIKDTLDAIQEEWEEALQEF-----DRKLTNLADELQEK------GGEGSLQDELLDLLLTGHASPALK 92 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhc------CCCCcHHHHHHHHHHhcCCCHHHH
Confidence 34556777788888887666543 222211 55556666554442 224556789999999999999663
No 72
>PRK11409 antitoxin YefM; Provisional
Probab=22.09 E-value=86 Score=27.10 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=27.8
Q ss_pred EEEccCCcchHHHHHHHH--HHHHHH--------HHHHHHHHHH
Q 008339 165 LVQHEGGPCGVLAAIQVI--LQFLIL--------VALVKSMGEI 198 (569)
Q Consensus 165 LvQ~~GGPCGVLAaVQAf--LK~LLF--------~aL~~ALa~I 198 (569)
++..+|+|..|+.+...| ++..|+ +-|.+|+.++
T Consensus 28 ~ITr~g~~~~Vl~S~~~yesl~Etl~ll~~p~~~~~l~~~i~~~ 71 (83)
T PRK11409 28 LITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSL 71 (83)
T ss_pred EEEeCCCCCEEEEeHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 788899999999999999 887776 4566666664
No 73
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=21.57 E-value=55 Score=26.28 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.9
Q ss_pred CcCCCCCCHHHHHHHHhcccCCc
Q 008339 117 APKEANLGIEEANQLFSMMFGSE 139 (569)
Q Consensus 117 ~~~G~pIs~e~a~eLr~lLFG~~ 139 (569)
+.+|+||+.+ .+++.+++||..
T Consensus 25 Sf~GrPltde-vK~a~k~i~~~~ 46 (49)
T PF06543_consen 25 SFDGRPLTDE-VKEAMKLIFGKR 46 (49)
T ss_pred eeCCeeCCHH-HHHHHHHHHhhh
Confidence 6889999987 566667778754
No 74
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=21.23 E-value=68 Score=31.57 Aligned_cols=42 Identities=21% Similarity=0.429 Sum_probs=27.6
Q ss_pred cCCCeeehHHHHHHHhhcccccCCCCCCcCcCcceeeeEEeeCCccc
Q 008339 429 CGSGFIVWSEFWQVILDLDKSLGGLKDSTGLMGKKVFDLYHFNGIAK 475 (569)
Q Consensus 429 e~~GIIL~~eF~~~~~~~e~s~~~~k~~~~~~~~~~F~lyhYNGi~~ 475 (569)
+|.|=.-+++|+.-|.-.... .|......-+|.+|+|||-..
T Consensus 83 DG~GnlsfddFlDmfSV~sE~-----APrdlK~~YAFkIYDfd~D~~ 124 (189)
T KOG0038|consen 83 DGRGNLSFDDFLDMFSVFSEM-----APRDLKAKYAFKIYDFDGDEF 124 (189)
T ss_pred CCCCcccHHHHHHHHHHHHhh-----ChHHhhhhheeEEeecCCCCc
Confidence 678999999998854422111 111123567899999999763
Done!