BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008340
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WLJ|A Chain A, Human Isg20
Length = 189
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324
G T + E L+L+ K ++VGH L++D ALK +S + DT+ +L++ +
Sbjct: 66 G-ATPFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
+ SLRVL+++ L + IQ S GH S EDARA MEL + R
Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167
>pdb|2P1J|A Chain A, Crystal Structure Of A Polc-Type Dna Polymerase Iii
Exonuclease Domain From Thermotoga Maritima
pdb|2P1J|B Chain B, Crystal Structure Of A Polc-Type Dna Polymerase Iii
Exonuclease Domain From Thermotoga Maritima
Length = 186
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
Query: 207 FGSSPYEILALDCEMCYTNEGL-ELTRVTLVDIKGQVLLDK---LVKPSNAIVDYNTRYS 262
FG + + + LD E + + E+ + V I+G ++D+ L+KPS I ++ +
Sbjct: 9 FGDATF--VVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEIT 66
Query: 263 GITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI 307
GIT EML S++++ EFL + +++I+V H+ D L++
Sbjct: 67 GITQEMLEN-KRSIEEVLPEFLGFL-EDSIIVAHNANFDYRFLRL 109
>pdb|2V8I|A Chain A, Structure Of A Family 2 Pectate Lyase In A Native Form
pdb|2V8K|A Chain A, Structure Of A Family 2 Pectate Lyase In Complex With
Trigalacturonic Acid
Length = 543
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 305 LKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFG----------HDSTE 354
L + L+ ++LYKH Q T + LA +++ ++G G + T+
Sbjct: 199 LNAGNDLIYSASLLYKHQQDQGALTWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTD 258
Query: 355 DARAAMELALLKIRN-GPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIK 405
DA + R GP+FG P ++ +LK G+TSTL ++++
Sbjct: 259 DADTHSKFGDRAQRQFGPEFG-PTALEGNMMLK-----GRTSTLYSENALMQ 304
>pdb|2V8J|A Chain A, Structure Of A Family 2 Pectate Lyase In Complex With A
Transition Metal
Length = 535
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 305 LKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFG----------HDSTE 354
L + L+ ++LYKH Q T + LA +++ ++G G + T+
Sbjct: 198 LNAGNDLIYSASLLYKHQQDQGALTWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTD 257
Query: 355 DARAAMELALLKIRN-GPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIK 405
DA + R GP+FG P ++ +LK G+TSTL ++++
Sbjct: 258 DADTHSKFGDRAQRQFGPEFG-PTALEGNMMLK-----GRTSTLYSENALMQ 303
>pdb|2HWG|A Chain A, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
pdb|2HWG|B Chain B, Structure Of Phosphorylated Enzyme I Of The
Phosphoenolpyruvate:sugar Phosphotransferase System
Length = 575
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI 307
I D + HE++ G ++L+++ +E+LK + +G L ++L LKI
Sbjct: 93 IKDKHXTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKI 146
>pdb|2L5H|A Chain A, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2L5H|B Chain B, Solution Structure Of The H189q Mutant Of The Enzyme I
Dimer Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI 307
I D + HE++ G ++L+++ +E+LK + +G L ++L LKI
Sbjct: 93 IKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKI 146
>pdb|2KX9|A Chain A, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2KX9|B Chain B, Solution Structure Of The Enzyme I Dimer Using Residual
Dipolar Couplings And Small Angle X-Ray Scattering
pdb|2XDF|A Chain A, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
pdb|2XDF|B Chain B, Solution Structure Of The Enzyme I Dimer Complexed With
Hpr Using Residual Dipolar Couplings And Small Angle
X-Ray Scattering
Length = 573
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI 307
I D + HE++ G ++L+++ +E+LK + +G L ++L LKI
Sbjct: 93 IKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKI 146
>pdb|3EZE|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli Nmr, Restrained Regularized Mean
Structure
pdb|2EZB|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 14 Structures
pdb|2EZC|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 14 Structures
pdb|3EZB|A Chain A, Complex Of The Amino Terminal Domain Of Enzyme I And The
Histidine-Containing Phosphocarrier Protein Hpr From
Escherichia Coli
pdb|1EZA|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Nmr, Restrained Regularized Mean Structure
pdb|1EZB|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 17 Structures
pdb|1EZC|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, 17 Structures
pdb|1EZD|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Nmr, 16 Structures
pdb|2EZA|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli,
Nmr, Restrained Regularized Mean Structure
Length = 259
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI 307
I D + HE++ G ++L+++ +E+LK + +G L ++L LKI
Sbjct: 93 IKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKI 146
>pdb|1ZYM|A Chain A, Amino Terminal Domain Of Enzyme I From Escherichia Coli
pdb|1ZYM|B Chain B, Amino Terminal Domain Of Enzyme I From Escherichia Coli
Length = 258
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 254 IVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI 307
I D + HE++ G ++L+++ +E+LK + +G L ++L LKI
Sbjct: 93 IKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKI 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,922,044
Number of Sequences: 62578
Number of extensions: 577444
Number of successful extensions: 1524
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 17
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)