BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008340
(569 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7M4|SDN5_ARATH Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2
SV=2
Length = 567
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/574 (66%), Positives = 455/574 (79%), Gaps = 12/574 (2%)
Query: 1 MSSTEH----ESSDEDISSSNNNNNGNNGNNFYDIYGPQGKAEVIFKN-ESTLNLTDVQG 55
MSS++ E++ ED + + N GN+F+DIYGP+ KAE+ FK+ E+TLNL DVQG
Sbjct: 1 MSSSKRKRGAETAAED--CDDGTDKSNTGNSFFDIYGPEAKAELDFKSPETTLNLQDVQG 58
Query: 56 LVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGFKECCDKPRALL 115
LVTWVLA+G MPSWVFIKNKPLI KVV+LY+PGLDAALYLS SKTL+ K CC P ALL
Sbjct: 59 LVTWVLAEGFMPSWVFIKNKPLIPKVVLLYLPGLDAALYLSHSKTLSSLKSCCGNPMALL 118
Query: 116 ALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPF 175
ALSC+ D M TID +LTCK ++K+ S+ S E C+ + + S EL KDIPF
Sbjct: 119 ALSCVVDEMRTIDTILTCKGRKKKTVTSSVEPPPLVSSPEACNLMGK--SFVELTKDIPF 176
Query: 176 PITYYTLTEKQLEDNNYCYNQPGFLSTVPAPFGSSPYEILALDCEMCYTNEGLELTRVTL 235
P++YYTL++K++E N Y + + T+PAP GS P EI+ALDCEMC T EGLELTRVTL
Sbjct: 177 PVSYYTLSQKEMEQNGYTFEKLELTPTLPAPSGSCPPEIVALDCEMCITKEGLELTRVTL 236
Query: 236 VDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVG 295
VDI+GQVLLDKLV P+N I DYNTRYSGIT M+ GVTT+LKDIQEEFLKLV+KETILVG
Sbjct: 237 VDIQGQVLLDKLVMPTNPITDYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVG 296
Query: 296 HSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTED 355
HSLENDLL+LKISH LVIDTAVLYKHP G S+KT LR+LAKKFL+REIQ+S GHDS ED
Sbjct: 297 HSLENDLLSLKISHNLVIDTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAED 356
Query: 356 ARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAI 415
A+AAM+LALLKI++GPDFGSPP V+R KLL VL E GKT+++IDN++I+KRYASESS+AI
Sbjct: 357 AKAAMDLALLKIKHGPDFGSPPEVIRKKLLAVLNESGKTTSIIDNINIVKRYASESSNAI 416
Query: 416 PVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDK 475
PVSSDDE LSKA KEVKN R FVWTQFSELN HF+ +A D KLN +LAE+ISL TC+K
Sbjct: 417 PVSSDDEALSKAVKEVKNKRSQFVWTQFSELNAHFQSRADDPQKLNSRLAEMISLLTCNK 476
Query: 476 KLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRLREMLR 535
K S KS V+PE KEIL + + RV SLY ALPTN M I+CTGHGDT+IVHR+R+ML+
Sbjct: 477 K---SGLKKSNVSPETKEILKKMNERVQSLYAALPTNAMFIVCTGHGDTSIVHRVRKMLK 533
Query: 536 EQSKNSMSRKMIVKVLEELQAQAEVALCFVGVKH 569
++ + R+ +VKVLEELQAQAEVALCFVG+K
Sbjct: 534 DEDEIGFDREKLVKVLEELQAQAEVALCFVGIKQ 567
>sp|O94443|YFE9_SCHPO Uncharacterized exonuclease C637.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC637.09 PE=3 SV=2
Length = 631
Score = 226 bits (576), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 171/542 (31%), Positives = 263/542 (48%), Gaps = 62/542 (11%)
Query: 45 ESTLNLTDVQGLVTWVLADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAGF 104
+ L ++D+Q LV W LADG PSWV ++NK +I + V+L VPGL+ + + GF
Sbjct: 97 QKPLKISDLQELVFWCLADGQAPSWVLVRNKQMIHRAVILLVPGLEPSQF--------GF 148
Query: 105 KECCDKPRALLALSCLS--------DTMLTIDGLLTCKLKRKRNAVDSMTKS---TQPSQ 153
+ + L + L+ D D + R V S + + S
Sbjct: 149 QPVRGNKHSFLLPNLLNENGPIQLPDFCEVFDRAWPTRSPGDRFRVFSPVNAFLQSPLSN 208
Query: 154 KENCSTVSENSSSAELLKDIPFPITYYTLTEKQLEDNNYCY-----NQPGFLSTVPAPFG 208
++ E + A K + ++Y + E + + QP F
Sbjct: 209 EQKKKRDKETRAMASFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPSGWVASAGDFH 268
Query: 209 SSPY--EILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITH 266
S P +ILA+DCEM T GLE+ RVT+VD+K +V+ D+ VKP + + DY T+YSGIT
Sbjct: 269 SPPINPKILAIDCEMVRTENGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITE 328
Query: 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGS 326
E L VTT L D+Q K V T+L+GHSL +DL LK +H +IDTA +Y H +G
Sbjct: 329 EKLRNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHPHIIDTANIYNHTRGPP 388
Query: 327 HKTSLRVLAKKFLSREIQQSG-FGHDSTEDARAAMELALLKIRNGPDFG----SPPSVMR 381
K SL+ LA K+L REIQ++G GHDS EDA A ++L LK++NGP FG S+
Sbjct: 389 SKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKVKNGPAFGLFNQDFESIFH 448
Query: 382 -------TKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKND 434
T L+ + +YG + I + ++ ++DDEV+S +D
Sbjct: 449 RLSRQQPTPLIGAIADYGNPESCI---------GKAAHKSVSCANDDEVVSAVVS--LSD 497
Query: 435 RIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEI 494
+FVW +F EL + A A N K E S + + + S+ +
Sbjct: 498 MHNFVWGRFREL----EHAAMWNANRNTK-QENNSDTDTENDSVEEDQVTSYSS-----A 547
Query: 495 LARTDARVNSLYTALPTNTMLIICTGHGDTAIVHRL---REMLREQSKNSMSRKMIVKVL 551
L R + R+ LY +LP ++L++ TG G+ + +L R+ R++ + ++ VK
Sbjct: 548 LERFNRRIRLLYDSLPKGSLLLLYTGTGNPIEMSKLNAIRQQFRKEYQTKKWDELSVKWT 607
Query: 552 EE 553
+E
Sbjct: 608 DE 609
>sp|P53331|REXO1_YEAST RNA exonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RNH70 PE=1 SV=1
Length = 553
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 237/490 (48%), Gaps = 55/490 (11%)
Query: 45 ESTLNLTDVQGLVTWVL-ADGIMPSWVFIKNKPLIQKVVMLYVPGLDAALYLSQSKTLAG 103
E + + DV+ + ++L A+ P W+ I N+ +QK+++L++PGL + + T
Sbjct: 62 EKGIGIKDVRDMTQYLLQAENNSPKWIDICNRSSLQKMIVLFIPGLQPDDFENGKNT--- 118
Query: 104 FKECCDKPRALLALSCLSDTMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSEN 163
F E D + ++ T T + + +S S + +
Sbjct: 119 FNEISDDNFKYIP-GEIASTFHTFPVMAPGSKMTLFSPYNSFINV-------GLSKMEKI 170
Query: 164 SSSAELLKDIPFPITYYTLTEKQLEDNNYCYN------QPGFLSTVPAPFGSSPYEILAL 217
+ EL K I L+E+QL N+Y + ++ TV G S I AL
Sbjct: 171 NKLKELQKKKKITINDLVLSEQQLVANDYPLDSGDTNFDTDWVQTVDFTHGGS--HIFAL 228
Query: 218 DCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS-GVTTSL 276
DCEMC + +GL LTR++LV+ +V+ ++LVKP IVDY TRYSGIT E L+ G +L
Sbjct: 229 DCEMCLSEQGLVLTRISLVNFDNEVIYEELVKPDVPIVDYLTRYSGITEEKLTVGAKKTL 288
Query: 277 KDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAK 336
+++Q++ LK++ + IL+GHSL+NDL +K+ H LV+DTA++Y H G K SL+ L++
Sbjct: 289 REVQKDLLKIISRSDILIGHSLQNDLKVMKLKHPLVVDTAIIYHHKAGDPFKPSLKYLSE 348
Query: 337 KFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPSVMRTKLLKVLFEYGKTST 396
FL++ IQ HDS EDARA +EL LKI NG FG + L L + +
Sbjct: 349 TFLNKSIQNG--EHDSVEDARACLELTKLKILNGLAFGI--GINTENLFTKLHRFEVKTV 404
Query: 397 LIDNVSIIKRYASESSHA--IPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQA 454
L++++ IIK + + S I DDE WT E NL+
Sbjct: 405 LLNDM-IIKNHTEDDSKGQLIRCVEDDE----------------TWTHIHE-NLN----- 441
Query: 455 KDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTM 514
KD + ++ L +KK K SF + +L + LY TM
Sbjct: 442 KDVKLIVGRIKNLERSRNYNKK--PRKETPSF---DASMVLHDIGQHLTQLYENATPGTM 496
Query: 515 LIICTGHGDT 524
++I +G GDT
Sbjct: 497 ILIMSGTGDT 506
>sp|A0PJM3|GORL_HUMAN Putative exonuclease GOR-like protein OS=Homo sapiens GN=REXO1L2P
PE=5 SV=2
Length = 583
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T Y I ALDCEMCYT GLELTRVT+VD +V+ D VKP N IVD
Sbjct: 392 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 451
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T ++ + +L +Q L +TIL+GHSLE+DLLALK+ H V+DTA
Sbjct: 452 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 511
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369
VL+ H G +K SLR LA +L++ IQ S GH+S+EDA A ++L + K+R
Sbjct: 512 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDANACLQLVMWKVRQ 564
>sp|Q8IX06|GOR_HUMAN Exonuclease GOR OS=Homo sapiens GN=REXO1L1 PE=2 SV=2
Length = 675
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 198 GFLSTVPAPFGSSPYE-ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVD 256
GF+ T Y I ALDCEMCYT GLELTRVT+VD +V+ D VKP N IVD
Sbjct: 484 GFVETFKKELSRDAYPGIYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVD 543
Query: 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTA 316
YNTR+SG+T ++ + +L +Q L +TIL+GHSLE+DLLALK+ H V+DTA
Sbjct: 544 YNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTA 603
Query: 317 VLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369
VL+ H G +K SLR LA +L++ IQ S GH+S+EDA A ++L + K+R
Sbjct: 604 VLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQ 656
>sp|P48778|GOR_PANTR Exonuclease GOR OS=Pan troglodytes GN=REXO1L1 PE=2 SV=3
Length = 690
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 107/156 (68%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
I ALDCEMCYT GLELTRVT+VD +V+ D VKP N IVDYNTR+SG+T ++ +
Sbjct: 407 IYALDCEMCYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTS 466
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRV 333
+L +Q L +TIL+GHSLE+DLLALK+ H V+DTAVL+ H G +K SLR
Sbjct: 467 ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVLDTAVLFPHYLGFPYKRSLRN 526
Query: 334 LAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369
LA +L + IQ S GH+S+EDA A ++L + K+R
Sbjct: 527 LAADYLGQIIQDSQDGHNSSEDANACLQLVMWKVRQ 562
>sp|Q7TT28|REXO1_MOUSE RNA exonuclease 1 homolog OS=Mus musculus GN=Rexo1 PE=1 SV=1
Length = 1213
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 106/155 (68%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
+ ALDCEM YT GLELTRVT+VD QV+ D VKP N +VDYNTR+SG+T L +
Sbjct: 1052 VFALDCEMSYTTYGLELTRVTVVDTDMQVVYDTFVKPDNEVVDYNTRFSGVTEADLVDTS 1111
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRV 333
+L+D+Q L + +TIL+GHSLE+DLLALK+ HG V+DT+VL+ H G +K SLR
Sbjct: 1112 ITLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHGTVVDTSVLFPHRLGLPYKRSLRN 1171
Query: 334 LAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
L +L + IQ + GH S+EDA A M L + KIR
Sbjct: 1172 LMADYLRQIIQDNVDGHSSSEDASACMHLVIWKIR 1206
>sp|Q2T9U5|REXON_BOVIN Putative RNA exonuclease NEF-sp OS=Bos taurus PE=2 SV=1
Length = 783
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/319 (36%), Positives = 168/319 (52%), Gaps = 30/319 (9%)
Query: 67 PSWVFIKNKPLIQKVVMLYVPGLDA----ALYLSQSKTLAGFKECCDKPRALLALSCLSD 122
PSW + ++ ++ VV+ + GL YL FK P SD
Sbjct: 84 PSWCQLFHQNHLKNVVVFILQGLSQLHFYKFYLEFGFLRKAFKHKFRMPPPS------SD 137
Query: 123 TMLTIDGLLTCKLKRKRNAVDSMTKSTQPSQKENCSTVSENSSSAELLKDIPFP---ITY 179
+ I GL +K+ + ++ K+ + S S VS N +++ F +T
Sbjct: 138 FLADIIGL------QKKQIIGNLPKAMEGSLPFASSKVSINLQKDPIIQKYGFKKVGLTR 191
Query: 180 YTLTEKQLEDNNYCYNQPGFLST---VPAPFGSSPYE---ILALDCEMCYTNEGLELTRV 233
LT+++++ Y + GFL VP S + + LDCEMC T++G ELTR+
Sbjct: 192 CLLTKEEMK--TYHFPLQGFLDCENFVPTKCNGSVTDNSPLFGLDCEMCLTSKGRELTRI 249
Query: 234 TLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETIL 293
+LV G ++D+LVKP N IVDY T +SGIT ++L+ VTT LKD+Q L+ + +L
Sbjct: 250 SLVAEGGGCVMDELVKPDNKIVDYLTSFSGITKKILNPVTTKLKDVQRRLKILLPPDAVL 309
Query: 294 VGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-QSGFGHDS 352
VGHSL+ DL ALK+ H VIDT++LY QG K L+ LAK L ++IQ GHD+
Sbjct: 310 VGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKAILGKDIQCPDRLGHDA 367
Query: 353 TEDARAAMELALLKIRNGP 371
TEDAR +ELA ++ GP
Sbjct: 368 TEDARTTLELARYFLKYGP 386
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 109/159 (68%), Gaps = 3/159 (1%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
+ LDCEMC T++G ELTR++LV G ++D+LVKP N I+DY T +SGIT ++L+ VT
Sbjct: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRV 333
T LKD+Q + L+ + +LVGHSL+ DL ALK+ H VIDT++LY QG K L+
Sbjct: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
Query: 334 LAKKFLSREIQ-QSGFGHDSTEDARAAMELALLKIRNGP 371
LAK L ++IQ GHD+TEDAR +ELA +++GP
Sbjct: 346 LAKVILGKDIQCPDRLGHDATEDARTILELARYFLKHGP 384
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 108/159 (67%), Gaps = 3/159 (1%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
+ LDCEMC T++G ELTR++LV G ++D+LVKP N I+DY T +SGIT ++L+ VT
Sbjct: 228 LFGLDCEMCLTSKGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVT 287
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRV 333
T LKD+Q + L+ + +LVGHSL+ DL ALK+ H VIDT++LY QG K L+
Sbjct: 288 TKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKF 345
Query: 334 LAKKFLSREIQ-QSGFGHDSTEDARAAMELALLKIRNGP 371
LAK L ++IQ GHD+TEDAR +ELA ++ GP
Sbjct: 346 LAKAILGKDIQCPDRLGHDATEDARIILELAQYFLKYGP 384
>sp|Q8N1G1|REXO1_HUMAN RNA exonuclease 1 homolog OS=Homo sapiens GN=REXO1 PE=1 SV=3
Length = 1221
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 105/155 (67%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
I ALDCEM YT GLELTRVT+VD V+ D VKP N IVDYNTR+SG+T L+ +
Sbjct: 1060 IYALDCEMSYTTYGLELTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADTS 1119
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRV 333
+L+D+Q L + +TIL+GHSLE+DLLALK+ H V+DT+VL+ H G +K SLR
Sbjct: 1120 VTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKRSLRN 1179
Query: 334 LAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
L +L + IQ + GH S+EDA A M L + K+R
Sbjct: 1180 LMADYLRQIIQDNVDGHSSSEDAGACMHLVIWKVR 1214
>sp|A1A5R7|REXON_RAT Putative RNA exonuclease NEF-sp OS=Rattus norvegicus PE=2 SV=1
Length = 754
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 145/270 (53%), Gaps = 26/270 (9%)
Query: 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
SSP + LDCE+C T+ G ELTR++LV G L+D+LVKP I+DY T +SGIT E+
Sbjct: 219 SSP--LFGLDCEVCLTSMGKELTRISLVAEGGYCLMDELVKPDFKILDYLTSFSGITKEI 276
Query: 269 LSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHK 328
L+ VTT LKD+Q+ +L+ + +LVGH L+ DL LKI H VIDT++LY QG K
Sbjct: 277 LNPVTTKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKIIHPYVIDTSLLYIGKQGRRFK 336
Query: 329 TSLRVLAKKFLSREIQ-QSGFGHDSTEDARAAMELALLKIRNGP----DFG--------- 374
L LAK L ++IQ + GHD EDAR A+EL ++ GP +F
Sbjct: 337 --LTFLAKVILGKDIQCPNKLGHDGIEDARTALELVQYFLKYGPKKIAEFNLEALAANQE 394
Query: 375 ----SPPSVMRTKLLKVLFEYG-KTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARK 429
+ MR+ +L+ L G K L ++ + Y + + SS+ EVL +AR
Sbjct: 395 QGNKEGATHMRS-VLECLDSMGQKLLFLTQDIDELSSY--RNCQTVKCSSNKEVLEQARV 451
Query: 430 EVKNDRIHFVWTQFSELNLHFKKQAKDEAK 459
EV + V F F ++ K+ K
Sbjct: 452 EVPLFPFNIVQFSFRPFPPLFAEEMKNNMK 481
>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=REX3 PE=3 SV=1
Length = 757
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 108/165 (65%), Gaps = 15/165 (9%)
Query: 208 GSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSG---- 263
GS ++A+DCEM YT+ G+EL RVT +D G+ LD++V+P+ I+DYNTR+SG
Sbjct: 591 GSLQTSVVAVDCEMLYTSLGMELCRVTCIDYHGKKTLDRVVRPTGRILDYNTRFSGISDI 650
Query: 264 ----ITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLY 319
IT G + S ++ LKL+ K+TILVGH LENDL+A+++ H +IDT++LY
Sbjct: 651 NEPIITESGEKGDSISFEEAHRLILKLINKQTILVGHGLENDLIAMRLIHDRIIDTSILY 710
Query: 320 K--HPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+P+ +KT+L+ LA K+L R IQ HDS EDA AA+++
Sbjct: 711 PDFNPR---YKTALKTLALKYLKRTIQTG--EHDSMEDALAALDV 750
>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhabditis elegans GN=pqe-1
PE=2 SV=2
Length = 1647
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 6/175 (3%)
Query: 199 FLST-VPAPFGSSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDY 257
F+ST VP P + ALDCEM YT G L R+T+VD++ +LD VKP ++D
Sbjct: 1462 FVSTPVPVPNDQRSTRVYALDCEMVYTIAGPALARLTMVDMQRNRVLDVFVKPPTDVLDP 1521
Query: 258 NTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAV 317
NT +SG+T E ++ +LK ++ K V +TIL+GHSLE+DL A+++ H VIDTA+
Sbjct: 1522 NTEFSGLTMEQINSAPDTLKTCHQKLFKYVNADTILIGHSLESDLKAMRVVHKNVIDTAI 1581
Query: 318 LYKHPQGGSHKTSLRVLAKKFLSREIQ---QSGFGHDSTEDARAAMELALLKIRN 369
L++ + K +L+VL+ K L + IQ + GHDS EDA ++L +RN
Sbjct: 1582 LFRSTR--DTKVALKVLSAKLLHKNIQGDNEDAIGHDSMEDALTCVDLIFYGLRN 1634
>sp|Q9P7H2|REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex3 PE=3 SV=1
Length = 540
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 15/192 (7%)
Query: 187 LEDNN-YCYNQPGFLSTVPAPFGSSPYEI-------LALDCEMCYTNEGLELTRVTLVDI 238
+EDN+ + Y +L++V PF P ALDCE+CYT G+EL R+T+V
Sbjct: 348 IEDNHVFKYRHLPYLASV-HPFSYLPDSTNSKQLSHCALDCELCYTTNGMELARLTVV-A 405
Query: 239 KGQVLLDKLVKPSNAIVDYNTRYSGI--THEMLSGVTTSLKDIQEEFLKLVYKETILVGH 296
K +++D +KP I+ NTR+SGI E+ SG+T I+ + L + K TIL+GH
Sbjct: 406 KESIIMDVFIKPKGKILSLNTRFSGIHDAKELESGITMDQMYIKIKELGM-NKNTILIGH 464
Query: 297 SLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDA 356
LENDL A+++ H VIDTA+L+ H +G + SL+ L KK+L IQ S HDS EDA
Sbjct: 465 GLENDLNAMRLIHKRVIDTALLFTHARGPPFRYSLKYLTKKYLGTTIQTS--THDSEEDA 522
Query: 357 RAAMELALLKIR 368
+A++L K +
Sbjct: 523 VSALQLVFYKTK 534
>sp|Q9FFG1|SDN2_ARATH Small RNA degrading nuclease 2 OS=Arabidopsis thaliana GN=SDN2 PE=2
SV=1
Length = 466
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 213 EILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
E++A+DCEM +G E + RV VD +V+LD+ VKP+ +VDY T +G+T + L
Sbjct: 141 EMIAIDCEMVLCEDGSEAVVRVAAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEK 200
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSH---- 327
T S+ DIQE+ L + ++TILVG SL +DL LK+ H VIDT++++K+ G+
Sbjct: 201 ATISVVDIQEKLLMFISEDTILVGQSLNHDLKVLKVDHARVIDTSLVFKYNYDGTRRPLR 260
Query: 328 --KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPS 378
+ SL L K L E+Q+ G H+ DA AAM+L L + NG + P S
Sbjct: 261 LKRPSLNYLCKCILGYEVQKEGVPHNCVHDAEAAMKLVLAILDNGAETSVPLS 313
>sp|A3KPE8|SDN1_ARATH Small RNA degrading nuclease 1 OS=Arabidopsis thaliana GN=SDN1 PE=2
SV=1
Length = 409
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 214 ILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
++A+DCEM +G E L RV +VD +V+LD+ VKP+ +VDY T +GIT E +
Sbjct: 140 MVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENA 199
Query: 273 TTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGS-HKTSL 331
+ S+ DIQE + TILVGHSL DL LKI H VIDTA+++K+P + SL
Sbjct: 200 SLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSL 259
Query: 332 RVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSPPS 378
L K L E++++G HD DA AAM+LAL + D PS
Sbjct: 260 NNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPS 306
>sp|Q6CJB5|REXO3_KLULA RNA exonuclease 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX3 PE=3 SV=1
Length = 478
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 120/195 (61%), Gaps = 18/195 (9%)
Query: 178 TYYTLTEKQLEDNNYCYNQPGF--LSTVPAPFGS-----SPYEILALDCEMCYTNEGLEL 230
+Y ++ ++ N+ Y F LS+V PF S +LALDCEM +T++G E+
Sbjct: 278 SYSDISAGCMKAKNHVYKWENFTKLSSV-VPFKSLVDIKGEENVLALDCEMAFTSKGYEM 336
Query: 231 TRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFL--KLV 287
R+T+VD +V+ DK++KP I+D N+++SGI H + ++ + ++ ++ ++
Sbjct: 337 IRITIVDFWSSEVVYDKVIKPLGEIIDLNSKFSGIHH--IDDTAPTIHEAEKCYICPSMI 394
Query: 288 YKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSG 347
+ +IL+GH L+NDL ++I H VIDTAVLY G +K+SL+ L+ + LSR IQ G
Sbjct: 395 NQNSILIGHGLDNDLRVMRIVHDKVIDTAVLY---PAGKYKSSLKNLSFEILSRRIQ--G 449
Query: 348 FGHDSTEDARAAMEL 362
HDS+EDA AAM++
Sbjct: 450 GEHDSSEDAIAAMDV 464
>sp|Q750A5|REXO3_ASHGO RNA exonuclease 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX3 PE=3 SV=1
Length = 382
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 104/157 (66%), Gaps = 9/157 (5%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+LALDCEM YT+ G EL R+T+V+ VL D++V+P I+D NT++SG+ HE+ V
Sbjct: 223 VLALDCEMAYTSCGYELIRLTVVEFWTNAVLFDEIVQPLGEIIDLNTQFSGV-HEIDRAV 281
Query: 273 TTSLKDIQEEFLK--LVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTS 330
+ ++ +E FL ++ + +IL+GH LENDL L+I H +IDTA+LY + G K+S
Sbjct: 282 AKTFEEAREVFLSPAMINENSILIGHGLENDLNVLRIIHDKIIDTAILYPN---GKFKSS 338
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKI 367
LR LA + LSR IQ HDS+EDA AAM++ K+
Sbjct: 339 LRNLAFQELSRRIQTG--EHDSSEDAIAAMDVVKHKL 373
>sp|Q5AL29|REXO3_CANAL RNA exonuclease 3 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX3 PE=3 SV=1
Length = 404
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 98/153 (64%), Gaps = 7/153 (4%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVD-IKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+L +DCEM +T +G EL R+T +D + +LD +KP IVD+NTRYSGI HE+
Sbjct: 241 VLGIDCEMGFTTKGFELMRITAIDYFTSKTVLDIFIKPIGEIVDFNTRYSGI-HELTDDF 299
Query: 273 TTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLY--KHPQGGSHKTS 330
S + E+ +++ ETIL+GH LEND+ A+++ H +IDT++L+ K G + + S
Sbjct: 300 L-SWEQSMEKLGEIMDSETILIGHGLENDMNAMRLIHENIIDTSILFPNKWKTGPTRRWS 358
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMELA 363
L+ LA +FLSR IQ HDS ED+ AA+++
Sbjct: 359 LKDLAFEFLSRRIQTG--EHDSCEDSIAAIDIV 389
>sp|Q4WYA1|REXO3_ASPFU RNA exonuclease 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex3 PE=3 SV=1
Length = 645
Score = 116 bits (290), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 21/178 (11%)
Query: 210 SPYEILALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEM 268
P + + DCEM YT GLEL R+T V +G++LLD LV+P I+D N+R+SG+ E
Sbjct: 418 GPQQPVCFDCEMGYTTLGLELIRLTAVSWPQGKLLLDILVRPMGEILDLNSRFSGVFPEH 477
Query: 269 LSG-------------------VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH 309
V S + K + +T L+GH+++NDL A +I H
Sbjct: 478 YQKAIPYKSTSSPSTTGDGALQVVESPAAARALLFKFLQPDTPLIGHAIDNDLNACRIIH 537
Query: 310 GLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF-GHDSTEDARAAMELALLK 366
+IDT +LY HP+G + L+ L KK+L R+IQ G GHDS EDA A +L +K
Sbjct: 538 PTIIDTVLLYPHPRGLPIRMGLKALVKKYLDRDIQTKGSQGHDSKEDAIATGDLVRVK 595
>sp|Q5B367|REXO3_EMENI RNA exonuclease 3 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=rex3 PE=3 SV=2
Length = 638
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 97/181 (53%), Gaps = 29/181 (16%)
Query: 215 LALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG-- 271
+ DCEM YT G+EL R+T V +G+ +LD LV+P ++D N+R+SG+ E +
Sbjct: 408 ICFDCEMGYTTLGMELIRLTAVSWPEGKKVLDVLVRPLGEVLDLNSRFSGVFPEHYTNAL 467
Query: 272 ---------------------VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG 310
+ +S + L+ T L+GH+++NDL A +I H
Sbjct: 468 PYSTAPTKSSAPSSSSPSQLQLVSSPAAARTLLFNLLTPSTPLIGHAIDNDLNACRIIHP 527
Query: 311 LVIDTAVLYKHPQGG-SHKTSLRVLAKKFLSREIQQSGF----GHDSTEDARAAMELALL 365
VIDTA+LY HP GG ++ SLR LAKK L REIQ G GHDS EDA A +L +
Sbjct: 528 TVIDTAILYPHPGGGLPYRMSLRTLAKKHLDREIQTGGASGKQGHDSVEDALATGDLVRV 587
Query: 366 K 366
K
Sbjct: 588 K 588
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 214 ILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+L++DCEM +G + L RV VD +V+LDK VKP ++DY T +G+T E L
Sbjct: 145 MLSIDCEMVTCEDGSQALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLERA 204
Query: 273 TTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQG-GSHKTSL 331
T S+ DIQ++ + + TILVGH L NDL L+I H VIDT+ +++ + + SL
Sbjct: 205 TLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHARVIDTSYVFEFVDAPKTQRPSL 264
Query: 332 RVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNG 370
L K L +E++ G H+ DA AAM+L L + G
Sbjct: 265 NNLCKSVLGQEVRMDGAAHNCVHDAAAAMKLVLAAVEKG 303
>sp|Q12090|REXO3_YEAST RNA exonuclease 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX3 PE=1 SV=1
Length = 404
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 101/161 (62%), Gaps = 9/161 (5%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+L+LDCEM +T+ G E+ R+T+VD G+ L D +++P IVD N+ +SG+ HE+
Sbjct: 243 VLSLDCEMAFTSLGYEMIRLTIVDFFTGKTLFDHVIQPIGDIVDLNSDFSGV-HEIDRTN 301
Query: 273 TTSLKDIQEEFL--KLVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTS 330
+ K+ + FL L+ K +IL+GH LENDL +++ H VIDTA+LY + K S
Sbjct: 302 CPTYKEALDVFLSENLINKNSILIGHGLENDLNVMRLFHNKVIDTAILYSRTK---FKVS 358
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGP 371
L+ LA + LSR+IQ HDS++DA A M++ +KI P
Sbjct: 359 LKNLAFEVLSRKIQNG--EHDSSQDAIATMDVVKVKIGISP 397
>sp|Q6FIU7|REXO3_CANGA RNA exonuclease 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX3 PE=3 SV=1
Length = 398
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 103/160 (64%), Gaps = 11/160 (6%)
Query: 214 ILALDCEMCYTNEGLELTRVTLVDI-KGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGV 272
+LALDCEM +T G E+ R+T+VD + L D++++P ++D NT++SG+ E +
Sbjct: 239 VLALDCEMGFTTMGYEMVRLTIVDFFTSKTLYDEIIRPIGEVIDLNTQFSGVREEDIL-Y 297
Query: 273 TTSLKDIQEEFLK--LVYKETILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTS 330
+D+ E+ L+ ++ + +IL+GH LENDL +++ H ++DTA++Y G K S
Sbjct: 298 AKDYEDVMEDVLRADMINRNSILIGHGLENDLNVMRLFHTRILDTAIMY---SVGRFKNS 354
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNG 370
L+ L+ + LSR+IQ HDS++DA AAM+ ++K +NG
Sbjct: 355 LKNLSFEILSRKIQLG--EHDSSQDAIAAMD--IIKAKNG 390
>sp|Q96AZ6|ISG20_HUMAN Interferon-stimulated gene 20 kDa protein OS=Homo sapiens GN=ISG20
PE=1 SV=2
Length = 181
Score = 99.4 bits (246), Expect = 8e-20, Method: Composition-based stats.
Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 10/164 (6%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324
G T + E L+L+ K ++VGH L++D ALK +S + DT+ +L++ +
Sbjct: 66 G-ATPFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
+ SLRVL+++ L + IQ S GH S EDARA MEL + R
Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167
>sp|B2GUW6|AEN_RAT Apoptosis-enhancing nuclease OS=Rattus norvegicus GN=Aen PE=2 SV=1
Length = 332
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 198 GFLSTVPAPF---GSSPYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPS 251
G S P P S P + +A+DCEM T +G EL R ++V G VL DK ++P
Sbjct: 86 GLCSKRPVPREAPSSGPSKYVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPE 145
Query: 252 NAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH-- 309
IVDY TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H
Sbjct: 146 MPIVDYRTRWSGITRQHMHKA-IPFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPG 203
Query: 310 GLVIDTAV---LYKHPQGGSH-KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ DT L P + + SL+ LA L ++IQ GH S EDA AMEL L
Sbjct: 204 SQIRDTTYVPNLLSQPSSLTRARVSLKDLALNLLHKKIQVGHHGHSSVEDAMTAMELYQL 263
>sp|Q8WTP8|AEN_HUMAN Apoptosis-enhancing nuclease OS=Homo sapiens GN=AEN PE=1 SV=2
Length = 325
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 93/177 (52%), Gaps = 14/177 (7%)
Query: 201 STVPAPFGSS---PYEILALDCEMCYTNEG---LELTRVTLVDIKGQVLLDKLVKPSNAI 254
S PAP +S P + +A+DCEM T EL R ++V G VL DK ++P I
Sbjct: 94 SRRPAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPI 153
Query: 255 VDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLV 312
DY TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H
Sbjct: 154 ADYRTRWSGITRQHMRKAVP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQT 211
Query: 313 IDTAVLYKH-PQGGSH---KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
DT + + G H + SL+ LA + L ++IQ GH S EDA AMEL L
Sbjct: 212 RDTTYVPNFLSEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRL 268
>sp|Q66UW5|ISG20_PIG Interferon-stimulated gene 20 kDa protein OS=Sus scrofa GN=Isg20
PE=1 SV=2
Length = 181
Score = 96.3 bits (238), Expect = 6e-19, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 10/164 (6%)
Query: 213 EILALDCEMCYTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
E++A+DCEM E L R +LV++ G VL DK ++P I DY TR SG+T + +
Sbjct: 6 EVVAMDCEMVGMGPRRESGLARCSLVNVHGAVLYDKFIQPEGEITDYRTRVSGVTPQHMV 65
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALK--ISHGLVIDTA---VLYKHPQ-G 324
G T + E L+L+ K ++VGH L++D ALK ++ + DT+ +L++ +
Sbjct: 66 G-ATPFAVARLEILQLL-KGKLVVGHDLKHDFQALKEDMNRYTIYDTSTDMLLWREAKLD 123
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368
+ SLRVL ++ L + IQ S GH S EDA+A MEL + R
Sbjct: 124 HCRRVSLRVLCERLLHKSIQNSLLGHSSVEDAKATMELYQISQR 167
>sp|Q5REE2|AEN_PONAB Apoptosis-enhancing nuclease OS=Pongo abelii GN=AEN PE=2 SV=1
Length = 325
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 201 STVPAPFGSS---PYEILALDCEMCYTNEG---LELTRVTLVDIKGQVLLDKLVKPSNAI 254
S PAP +S P + +A+DCEM T EL R ++V G VL DK ++P I
Sbjct: 94 SRRPAPGKASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGDVLYDKYIRPEMPI 153
Query: 255 VDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLV 312
VDY TR+SGIT + + + Q+E LKL+ K ++VGH+L ND ALK H
Sbjct: 154 VDYRTRWSGITRQHMCKAIP-FQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQT 211
Query: 313 IDTAVLYKHPQGGS----HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
DT + S + SL+ LA + L ++IQ GH S EDA AMEL L
Sbjct: 212 RDTTYVPNFLSEPSLHIRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRL 268
>sp|Q4PER6|REXO4_USTMA RNA exonuclease 4 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=REX4 PE=3 SV=1
Length = 375
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 87/160 (54%), Gaps = 12/160 (7%)
Query: 211 PYEILALDCEMC-YTNEGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P LA+DCEM ++G E L RV++V+ G + D+ V+P + DY T SG+ +
Sbjct: 132 PGNYLAIDCEMVGVGDKGSESILARVSIVNFHGATIYDQFVRPQEKVTDYRTWVSGVRPK 191
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVLYKHPQGG 325
L G S +Q E L+ K +LVGH+++NDL AL +SH L+ DTA P
Sbjct: 192 DLKGA-PSFSQVQGEVANLI-KGKVLVGHAIQNDLKALLLSHPKVLIRDTATF--QPLRD 247
Query: 326 SHKT---SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
KT SL+ LAK L +IQ G H S EDARA M +
Sbjct: 248 LAKTKYPSLKKLAKLVLGIDIQLEGESHSSVEDARATMAV 287
>sp|Q9CZI9|AEN_MOUSE Apoptosis-enhancing nuclease OS=Mus musculus GN=Aen PE=2 SV=1
Length = 336
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 87/164 (53%), Gaps = 11/164 (6%)
Query: 211 PYEILALDCEMCYTN-EGL--ELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P + +A+DCEM T +G EL R ++V G VL DK ++P IVDY TR+SGIT +
Sbjct: 106 PIKCVAIDCEMVGTGPQGRVSELARCSVVSYSGDVLYDKYIRPEMPIVDYRTRWSGITRQ 165
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAV---LYKHP 322
+ + Q+E LKL+ K ++VGH+L ND ALK H DT L P
Sbjct: 166 HMHKA-IPFQVAQKEILKLL-KGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNLLSQP 223
Query: 323 QG-GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ SL+ LA L ++IQ GH S EDA AMEL L
Sbjct: 224 SSLIRTRVSLKDLALNLLHKKIQVGHQGHSSVEDAMTAMELYQL 267
>sp|Q2YDK1|I20L2_BOVIN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Bos taurus
GN=ISG20L2 PE=2 SV=1
Length = 349
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 11/161 (6%)
Query: 211 PYEILALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T L R ++V+ G VL D+ + P IVDY TR+SGI +
Sbjct: 172 PGKMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQ 231
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLYKHP 322
+ T K + + LK++ + I+VGH++ ND AL+ H L DT+ +L +
Sbjct: 232 HMVNAT-PFKIARNQILKILAGK-IVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKA 289
Query: 323 QGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ T SL+ L KK L+R+IQ GH S EDA+A MEL
Sbjct: 290 DCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMEL 330
>sp|Q9H9L3|I20L2_HUMAN Interferon-stimulated 20 kDa exonuclease-like 2 OS=Homo sapiens
GN=ISG20L2 PE=1 SV=1
Length = 353
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 211 PYEILALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T L R ++V+ G VL D+ + P IVDY TR+SGI +
Sbjct: 176 PRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQ 235
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYK----- 320
+ T K + + LK++ + I+VGH++ ND AL+ H L DT+ +
Sbjct: 236 HMVNAT-PFKIARGQILKILTGK-IVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKA 293
Query: 321 -HPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
P+ + SL+ L KK L+R+IQ GH S EDA+A MEL
Sbjct: 294 DCPENAT--MSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
>sp|Q6AXU3|I20L2_RAT Interferon-stimulated 20 kDa exonuclease-like 2 OS=Rattus
norvegicus GN=Isg20l2 PE=2 SV=1
Length = 369
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 13/167 (7%)
Query: 209 SSPYEILALDCEMCYTNEG---LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGIT 265
S P +++A+DCEM T L R ++V+ G VL D+ ++P IVDY TR+SGI
Sbjct: 190 SLPRKMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIR 249
Query: 266 H-EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLY 319
M++ T K + + LK++ + ++VGH++ ND AL+ H L DT+ +L
Sbjct: 250 KCHMVNA--TPFKTARSQILKILSGK-VVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLN 306
Query: 320 KHPQGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ + T SL+ L KK LSR+IQ GH S EDA+A +EL L
Sbjct: 307 RKADCPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLELYKL 353
>sp|Q9SN09|SDN4_ARATH Putative small RNA degrading nuclease 4 OS=Arabidopsis thaliana
GN=SDN4 PE=3 SV=1
Length = 322
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 192 YCYNQPGFLSTVPAPFGSS--PYEILALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLV 248
+ Y++ F+S V + P ++LALDCEM +G E + RV VD +V+LD+ V
Sbjct: 51 HSYSKDWFVSDVGMKMSNVMIPNQMLALDCEMVLCEDGTEGVVRVGAVDRNLKVILDEFV 110
Query: 249 KPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKIS 308
KP +VDY T +G+T E + T SL DIQE+ + IL I
Sbjct: 111 KPHKPVVDYRTAITGVTAEDVQKATLSLVDIQEKLRPFLSAGAIL-------------ID 157
Query: 309 HGLVIDTAVLYKHPQGGS-HKTSLRVLAKKFLSREIQQSGFGHDSTED 355
H +VIDT++++K+P + SL L L E+Q++G H D
Sbjct: 158 HPIVIDTSLVFKYPNSRKLRRPSLNTLCMSVLGYEVQKAGVSHHCVHD 205
>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 /
JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1
Length = 263
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 15/155 (9%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCE EG + L RV+LV+ G V+LD VKP + D+ T SGIT + +
Sbjct: 96 IAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHMKN 155
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA----VLYKHPQGG 325
S K Q++ L + K+ ILVGH++++DL AL +SH VIDTA K+ +G
Sbjct: 156 -AVSFKQAQQQ-LSDILKDKILVGHAVKHDLEALMLSHPKSKVIDTARHLPFRQKYAKGK 213
Query: 326 SHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAM 360
S SL+ LAK+ L+ +I QSG H S EDARA M
Sbjct: 214 S--PSLKKLAKEILNMDI-QSG-QHSSVEDARATM 244
>sp|Q3U1G5|I20L2_MOUSE Interferon-stimulated 20 kDa exonuclease-like 2 OS=Mus musculus
GN=Isg20l2 PE=2 SV=2
Length = 368
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 11/161 (6%)
Query: 211 PYEILALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P +++A+DCEM T L R ++V+ G VL D+ V P IV+Y TR+SGI
Sbjct: 191 PGKMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKC 250
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA---VLYKHP 322
+ T K + + LK++ + +++GH++ ND AL+ H L DT+ +L +
Sbjct: 251 HMVNAT-PFKTARSQILKILSGK-VVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKA 308
Query: 323 QGGSHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
+ T SL+ L KK LSR+IQ GH S EDA+A MEL
Sbjct: 309 DCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMEL 349
>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1
Length = 319
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 215 LALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCEM G L RV++VD G + D VKP + ++ T SGI+ + +
Sbjct: 134 IAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSMR- 192
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVL--YKHPQGGSH 327
+++Q E KL+ + ILVGH L++DL AL +SH + DTA +K G
Sbjct: 193 FARDFEEVQAEIDKLL-RGRILVGHDLKHDLEALILSHPGKDIRDTAKFSGFKKYANG-R 250
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
K SLRVLA++ L EIQ G H S EDARA M L
Sbjct: 251 KPSLRVLAQQLLGVEIQ--GGEHSSIEDARATMLL 283
>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2
Length = 422
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Query: 215 LALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
LALDCEM E RV++V+ G+ + DK VKP+ + DY T SGI E L
Sbjct: 244 LALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLK- 302
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHG--LVIDTAVLYK--HPQGGSH 327
L+ +Q+E +++ K ILVGH+L NDL L + H + DT YK Q S
Sbjct: 303 QGEELEVVQKEVAEML-KGRILVGHALHNDLKVLFLDHPKKKIRDTQ-KYKPFKSQVKSG 360
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ SLR+L++K L ++QQ+ H S +DA+AAM L ++
Sbjct: 361 RPSLRLLSEKILGLQVQQA--EHCSIQDAQAAMRLYVM 396
>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2
Length = 272
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 10/161 (6%)
Query: 211 PYEILALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P + LA+DCE EG E L RV++V+ G + DK VKP + D+ T SG+T +
Sbjct: 96 PGKYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPK 155
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYKHPQGG 325
++ S ++ Q E KL+ + ILVGH++ +DL AL +SH + DT+
Sbjct: 156 HMNEA-ISFQEAQNETSKLL-EGRILVGHAIHHDLDALFLSHPKSRIRDTSQYKPFRSIS 213
Query: 326 SHKT-SLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
KT SL+ L+ FL +IQ G H S EDARA M L L
Sbjct: 214 MGKTPSLKKLSSHFLKIDIQ--GSAHSSVEDARATMLLFRL 252
>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rex-4
PE=3 SV=1
Length = 406
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 215 LALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
L++DCEM T L R ++VD G + D V+P+ + D+ T SGI+ ++
Sbjct: 217 LSIDCEMVGTGPSGATSVLARCSIVDFHGHQIYDSYVRPTAFVTDWRTHVSGISKRHMAS 276
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDL--LALKISHGLVIDTAVLYKHPQ-GGSHK 328
S + +Q L+ K ILVGH +++DL L + H + DTA + G K
Sbjct: 277 A-RSFESVQATVAALL-KGRILVGHDVKHDLEVLGFEHPHRDIRDTAKYSGFRKYGHGPK 334
Query: 329 TSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDF 373
SLRVLAK+ L EI Q H S EDAR AM L K ++G D
Sbjct: 335 PSLRVLAKEVLGIEIHQG--QHSSVEDARVAM-LLFRKEKHGFDM 376
>sp|Q757I9|REXO4_ASHGO RNA exonuclease 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=REX4 PE=3 SV=1
Length = 285
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 11/157 (7%)
Query: 213 EILALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEML 269
+ +A+DCE +G E L RV++V+ GQ +LD V+P + D+ T SGIT +
Sbjct: 112 KFVAMDCEFVGVGPDGKESVLARVSVVNYYGQEVLDLYVRPKEKVTDWRTWVSGITPAHM 171
Query: 270 SGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAVL--YKHPQGG 325
T L++ Q ++ K +L+GH L +DL L +SH + DT++ ++ G
Sbjct: 172 KQAVT-LEEAQRRVAAML-KNRVLIGHGLHHDLEMLMVSHPKAQIRDTSMHGPFREKYGA 229
Query: 326 SHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
SL+ LA++ L+ +IQ G H S EDARAA+ L
Sbjct: 230 GKTPSLKKLAREVLNIDIQ--GKEHSSVEDARAALLL 264
>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=REX4 PE=1 SV=1
Length = 289
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 11/155 (7%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSG 271
+A+DCE EG E L R+++V+ G V+LD+ VKP +V++ T SGI E +
Sbjct: 122 IAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKN 181
Query: 272 VTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA--VLYKHPQGGSH 327
T K+ Q++ ++ + ILVGH+L++DL AL +SH L+ DT+ + ++
Sbjct: 182 AIT-FKEAQKKTADIL-EGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGK 239
Query: 328 KTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
SL+ L ++ L IQ+ H S EDARA M L
Sbjct: 240 TPSLKKLTREVLKISIQEG--EHSSVEDARATMLL 272
>sp|Q4WHF8|REXO4_ASPFU RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=rex4 PE=3 SV=1
Length = 310
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 17/156 (10%)
Query: 215 LALDCEMCYTNEGLE----LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLS 270
+A+DCEM + L RV++V+ G+ + D V+P I D+ T SGI+ + ++
Sbjct: 117 VAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMA 176
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISHGL--VIDTAVLYKHPQ----G 324
SL+ +Q++ +++ ILVGH++ NDL AL + H + DT+ KHP
Sbjct: 177 EA-RSLEQVQKDVAEIL-DGRILVGHAVSNDLDALLLGHPKRDIRDTS---KHPPYRKIA 231
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAM 360
G L++LA +FL IQ H S EDA+A M
Sbjct: 232 GGGSPRLKILASEFLGLNIQDG--AHSSVEDAKATM 265
>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3
SV=1
Length = 408
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 211 PYEILALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P + LA+DCEM G+E L RV++V+ G V+LD V+P + DY T SG+
Sbjct: 129 PGQYLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQS 188
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH-GLVIDTAVLYKHPQ--G 324
L G ++ ++ L++ + IL+GH+++NDL L ++H G + YK Q
Sbjct: 189 DLLGA-PQFDEVNKQVANLLH-DKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIA 246
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ + L+ L++ L +IQ H S DAR AM L L
Sbjct: 247 KNKRPGLKKLSELLLGVQIQTG--AHSSVVDARVAMALYRL 285
>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=REX4 PE=3 SV=1
Length = 408
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 10/161 (6%)
Query: 211 PYEILALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHE 267
P + LA+DCEM G+E L RV++V+ G V+LD V+P + DY T SG+
Sbjct: 129 PGQYLAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQS 188
Query: 268 MLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH-GLVIDTAVLYKHPQ--G 324
L G ++ ++ L++ + IL+GH+++NDL L ++H G + YK Q
Sbjct: 189 DLLGA-PQFDEVNKQVANLLH-DKILIGHAIDNDLKVLMLTHPGPLTRDTQKYKPLQEIA 246
Query: 325 GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
+ + L+ L++ L +IQ H S DAR AM L L
Sbjct: 247 KNKRPGLKKLSELLLGVQIQTG--AHSSVVDARVAMALYRL 285
>sp|O94375|REXO4_SCHPO RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rex4 PE=3 SV=1
Length = 260
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 8/152 (5%)
Query: 215 LALDCEMCYTNEGLE-LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVT 273
+A+DCEM + + L RV++V+ G V+ D V+P + D+ T SG+ +
Sbjct: 94 IAMDCEMVGVADDMSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRD-A 152
Query: 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYKHPQGGSHKT-S 330
S + +Q E K++ +LVGH++ NDL L +SH ++ DT+ + + +T
Sbjct: 153 PSFEKVQAEVAKIL-DNRVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAKGRTPG 211
Query: 331 LRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
L+ LA+ L R+I QSG H S +DA+A MEL
Sbjct: 212 LKKLAEVILGRDI-QSG-QHSSVQDAQATMEL 241
>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REX4 PE=3 SV=1
Length = 294
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 13/156 (8%)
Query: 215 LALDCEMCYTN-EGLE--LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGIT-HEMLS 270
+++DCE +G + L RV++V+ G V+LD V+P + D+ T SGI H M +
Sbjct: 120 VSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSGIKPHHMAN 179
Query: 271 GVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTA--VLYKHPQGGS 326
VT +D Q++ + V K ILVGHS+ +DL AL +SH ++ DT+ + ++
Sbjct: 180 AVTQ--EDCQKQ-VSNVLKGRILVGHSVHHDLTALMLSHPRRMIRDTSRHMPFRQKYSEG 236
Query: 327 HKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMEL 362
SL+ L K+ L +IQ H S EDARA M L
Sbjct: 237 KTPSLKKLTKEILQLDIQDG--EHSSIEDARATMLL 270
>sp|Q5A3Q0|REXO4_CANAL RNA exonuclease 4 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=REX4 PE=3 SV=1
Length = 285
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 211 PYEILALDCEMCYTNEGLE---LTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGI-TH 266
P + +A+DCE + E L R+++++ G VLLD V+P + D+ T SGI ++
Sbjct: 113 PGKYVAIDCEFVGIGKDGEESALARISIINYYGVVLLDTYVRPQERVTDWRTWVSGIQSY 172
Query: 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKISH--GLVIDTAVLYKHPQ- 323
M + K Q + ++L+ ILVGH++ NDL L +SH ++ DT K +
Sbjct: 173 HMQDAI--DFKTAQLKTMELI-NNKILVGHAVNNDLDILFLSHPKSMIRDTCKFPKFREI 229
Query: 324 GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALL 365
G SL+ L K F+ +IQ H S EDARA M L L
Sbjct: 230 AGGKSPSLKKLIKHFIQVDIQIG--QHSSVEDARATMLLFRL 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,856,466
Number of Sequences: 539616
Number of extensions: 8079632
Number of successful extensions: 83396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 72400
Number of HSP's gapped (non-prelim): 9978
length of query: 569
length of database: 191,569,459
effective HSP length: 123
effective length of query: 446
effective length of database: 125,196,691
effective search space: 55837724186
effective search space used: 55837724186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)