Query 008340
Match_columns 569
No_of_seqs 278 out of 1238
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 23:54:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wlj_A Interferon stimulated g 100.0 1.4E-29 4.8E-34 242.6 12.3 156 212-369 5-168 (189)
2 2p1j_A POLIII, DNA polymerase 99.9 4.6E-25 1.6E-29 210.5 12.8 156 212-374 12-180 (186)
3 2gui_A DNA polymerase III epsi 99.9 6.4E-24 2.2E-28 203.0 13.3 154 212-370 9-185 (194)
4 1w0h_A 3'-5' exonuclease ERI1; 99.9 2.9E-23 9.9E-28 199.4 12.0 160 211-374 9-199 (204)
5 1y97_A Three prime repair exon 99.9 1.8E-22 6.1E-27 198.8 7.9 152 212-367 10-207 (238)
6 3mxm_B Three prime repair exon 99.9 1.7E-22 5.8E-27 201.4 7.0 152 211-366 11-211 (242)
7 1zbh_A 3'-5' exonuclease ERI1; 99.9 1.2E-21 4.1E-26 200.8 13.4 160 212-375 78-268 (299)
8 2igi_A Oligoribonuclease; RNAs 99.9 1.1E-21 3.8E-26 185.3 11.3 143 212-369 5-176 (180)
9 2xri_A ERI1 exoribonuclease 3; 99.9 7.4E-22 2.5E-26 193.9 10.2 160 212-376 31-220 (224)
10 2f96_A Ribonuclease T; RNAse, 99.9 1.1E-21 3.6E-26 192.2 9.9 158 212-375 29-218 (224)
11 1zbu_A ERI-1 homolog, 3'-5' ex 99.8 2.3E-21 7.9E-26 203.3 10.4 159 212-374 128-317 (349)
12 3u3y_B Three prime repair exon 99.8 5.3E-21 1.8E-25 197.9 9.1 152 211-366 11-211 (314)
13 2gbz_A Oligoribonuclease; ORN, 99.8 1.3E-20 4.4E-25 181.2 10.2 143 211-369 8-180 (194)
14 3cg7_A CRN-4, cell death-relat 99.8 4.1E-21 1.4E-25 198.0 6.9 157 212-373 19-212 (308)
15 3v9w_A Ribonuclease T; DEDD nu 99.8 8.7E-20 3E-24 179.7 12.4 152 212-369 37-220 (235)
16 2qxf_A Exodeoxyribonuclease I; 99.8 5.9E-19 2E-23 192.1 8.9 155 212-370 9-201 (482)
17 3tr8_A Oligoribonuclease; tran 99.7 1.8E-18 6.1E-23 166.6 7.7 144 211-369 8-180 (186)
18 2kfn_A Klenow fragment of DNA 98.4 2.1E-06 7.2E-11 95.8 14.4 142 213-370 27-193 (605)
19 4hec_A Putative uncharacterize 98.3 3.7E-06 1.3E-10 81.2 11.3 150 211-367 21-179 (190)
20 1x9m_A DNA polymerase; DNA plo 98.2 8.1E-07 2.8E-11 100.8 5.9 136 214-375 1-188 (698)
21 3saf_A Exosome component 10; e 97.7 0.00013 4.6E-09 78.3 11.1 128 212-368 129-275 (428)
22 4dfk_A DNA polymerase I, therm 97.6 5.5E-05 1.9E-09 83.6 6.5 117 213-370 11-128 (540)
23 1vk0_A Hypothetical protein; h 97.4 0.00026 9E-09 68.8 7.9 85 283-367 100-204 (206)
24 2e6m_A Werner syndrome ATP-dep 97.3 0.00021 7.3E-09 68.3 5.1 89 282-370 87-195 (208)
25 1yt3_A Ribonuclease D, RNAse D 96.9 0.0041 1.4E-07 65.1 11.5 128 213-369 23-169 (375)
26 1noy_A Protein (DNA polymerase 96.6 0.014 5E-07 61.4 12.5 150 211-365 105-334 (388)
27 2hbj_A Exosome complex exonucl 96.5 0.0097 3.3E-07 63.4 10.6 85 283-369 151-253 (410)
28 1qht_A Protein (DNA polymerase 96.5 0.0029 1E-07 72.6 6.6 139 211-366 134-326 (775)
29 3cym_A Uncharacterized protein 96.3 0.028 9.5E-07 60.4 13.0 86 281-369 85-186 (440)
30 3pv8_A DNA polymerase I; DNA p 96.1 0.0025 8.6E-08 71.1 3.6 127 214-368 31-179 (592)
31 2i09_A Phosphopentomutase; str 96.1 0.026 8.8E-07 60.2 11.0 116 373-523 224-342 (403)
32 3ot9_A Phosphopentomutase; alk 96.0 0.027 9.1E-07 60.0 10.5 116 373-523 220-335 (399)
33 1s5j_A DNA polymerase I; repli 95.3 0.11 3.8E-06 60.2 13.2 146 211-363 189-386 (847)
34 3k59_A POL II, DNA polymerase 95.1 0.14 4.8E-06 58.9 13.0 137 209-365 150-348 (786)
35 3iay_A DNA polymerase delta ca 94.8 0.049 1.7E-06 63.7 8.3 145 210-366 247-465 (919)
36 3qex_A DNA polymerase, GP43; d 94.8 0.13 4.3E-06 60.1 11.5 151 212-365 108-337 (903)
37 4gmj_B CCR4-NOT transcription 93.0 0.49 1.7E-05 48.1 10.7 150 213-368 35-243 (285)
38 2a1r_A Poly(A)-specific ribonu 92.3 0.42 1.4E-05 51.2 9.5 99 267-369 262-396 (430)
39 2gv9_A DNA polymerase; polymer 91.1 1.5 5E-05 52.8 13.2 155 210-366 318-550 (1193)
40 3d45_A Poly(A)-specific ribonu 91.0 0.24 8.4E-06 54.1 6.1 92 274-369 263-391 (507)
41 3igz_B Cofactor-independent ph 73.9 3.4 0.00012 45.7 5.6 79 416-527 394-473 (561)
42 2py5_A DNA polymerase; protein 73.3 3.6 0.00012 45.5 5.8 67 211-306 5-71 (575)
43 3q3q_A Alkaline phosphatase; h 71.4 5.5 0.00019 44.1 6.6 74 420-524 267-349 (565)
44 1o98_A 2,3-bisphosphoglycerate 68.8 6.2 0.00021 43.2 6.2 74 418-524 374-448 (511)
45 3m7v_A Phosphopentomutase; str 64.0 5.9 0.0002 39.6 4.6 34 491-524 312-345 (413)
46 2zkt_A 2,3-bisphosphoglycerate 63.7 13 0.00043 39.5 7.2 72 418-524 278-350 (412)
47 2gso_A Phosphodiesterase-nucle 62.7 11 0.00039 38.4 6.5 75 419-524 140-222 (393)
48 1ei6_A Phosphonoacetate hydrol 62.4 19 0.00066 37.0 8.3 69 419-523 175-243 (406)
49 2d5r_A CCR4-NOT transcription 57.2 40 0.0014 33.5 9.1 103 262-369 109-234 (252)
50 3nkq_A Ectonucleotide pyrophos 55.9 25 0.00084 40.6 8.4 94 384-522 224-325 (831)
51 3kd8_A 2,3-bisphosphoglycerate 49.4 23 0.00078 37.5 6.2 72 418-525 275-346 (399)
52 3szy_A Phosphonoacetate hydrol 45.6 44 0.0015 35.3 7.8 32 488-522 224-255 (427)
53 2p51_A SPCC18.06C protein; DED 45.0 34 0.0012 35.4 6.5 101 262-367 130-253 (333)
54 3lxq_A Uncharacterized protein 42.6 1.1E+02 0.0038 31.7 10.3 34 490-523 270-308 (450)
55 4gtw_A Ectonucleotide pyrophos 33.3 2.9E+02 0.0098 31.5 12.5 35 489-523 287-326 (823)
56 1uoc_A POP2; hydrolase, DEDD n 30.5 47 0.0016 33.6 4.8 105 262-369 124-264 (289)
57 2l82_A Designed protein OR32; 27.5 1.6E+02 0.0054 25.9 6.9 81 415-520 6-86 (162)
58 3q7c_A Nucleoprotein; deddh ex 22.7 28 0.00096 34.0 1.3 132 215-358 60-210 (243)
No 1
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.96 E-value=1.4e-29 Score=242.61 Aligned_cols=156 Identities=39% Similarity=0.573 Sum_probs=134.4
Q ss_pred CcEEEEEeceecCCCC--ceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcC
Q 008340 212 YEILALDCEMCYTNEG--LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYK 289 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g--~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~ 289 (569)
.++++|||||+|+.+. .+|++|++|+.+|+++|++||+|..+|++|.|++||||++||+++ +++.+|+.+|.+++ +
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a-~~~~~v~~~~~~~l-~ 82 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGA-TPFAVARLEILQLL-K 82 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTC-EEHHHHHHHHHHHH-T
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCC-CCHHHHHHHHHHHH-C
Confidence 4699999999999765 589999999999999999999999999999999999999999997 79999999999999 7
Q ss_pred CCEEEEeCchhhHHHHcccCCC--ccchhhhccccC--C--CCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHH
Q 008340 290 ETILVGHSLENDLLALKISHGL--VIDTAVLYKHPQ--G--GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELA 363 (569)
Q Consensus 290 ~tILVGHsL~~DL~aLki~hp~--viDT~~L~~~~~--g--~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~ 363 (569)
+++|||||+.||+++|+..+|. ++||+.+++..+ + ...+++|+.||+.|||++++.++.+|+|++||+||++||
T Consensus 83 ~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~ 162 (189)
T 1wlj_A 83 GKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELY 162 (189)
T ss_dssp TSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHH
T ss_pred CCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHH
Confidence 8999999999999999988874 899998754211 1 225788999999878999885323899999999999999
Q ss_pred HHHHHc
Q 008340 364 LLKIRN 369 (569)
Q Consensus 364 ~~kl~~ 369 (569)
+..++.
T Consensus 163 ~~l~~~ 168 (189)
T 1wlj_A 163 QISQRI 168 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 2
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.92 E-value=4.6e-25 Score=210.54 Aligned_cols=156 Identities=28% Similarity=0.341 Sum_probs=132.6
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEe-eCeEE--EEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhh
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDI-KGQVL--LDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLV 287 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~-~G~vv--~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll 287 (569)
.++++|||||+|..+. .+|++|++|.. +|+++ |+.||+|..+|+++.+++||||++||+++ +++.+|+++|.+++
T Consensus 12 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~-~~~~~v~~~~~~~l 90 (186)
T 2p1j_A 12 ATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENK-RSIEEVLPEFLGFL 90 (186)
T ss_dssp -CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTC-CBHHHHHHHHHHHS
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcC-CCHHHHHHHHHHHH
Confidence 4699999999999864 68999999985 57776 89999999999999999999999999998 79999999999999
Q ss_pred cCCCEEEEeCchhhHHHHcc---------cCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCCCCChHHHHHH
Q 008340 288 YKETILVGHSLENDLLALKI---------SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARA 358 (569)
Q Consensus 288 ~~~tILVGHsL~~DL~aLki---------~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~A 358 (569)
.+.+|||||+.||+.+|+. .+..++||..+++... ...+++|+.|++. +|++.. +.|+|++||++
T Consensus 91 -~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~~~~L~~l~~~-~gi~~~---~~H~Al~Da~~ 164 (186)
T 2p1j_A 91 -EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLRSYSLDSVVEK-LGLGPF---RHHRALDDARV 164 (186)
T ss_dssp -SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCSCCSHHHHHHH-TTCCST---TCCHHHHHHHH
T ss_pred -CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcCCCCHHHHHHH-cCCCCC---CCcCHHHHHHH
Confidence 7899999999999999973 1447899998887654 3356789999985 688865 47999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 008340 359 AMELALLKIRNGPDFG 374 (569)
Q Consensus 359 tl~L~~~kl~~g~~fg 374 (569)
|++||+..++++..-|
T Consensus 165 t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 165 TAQVFLRFVEMMKKEG 180 (186)
T ss_dssp HHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999988877655433
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.90 E-value=6.4e-24 Score=202.95 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=128.8
Q ss_pred CcEEEEEeceecCCC------CceEEEEEEEEee-CeEE---EEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHH
Q 008340 212 YEILALDCEMCYTNE------GLELTRVTLVDIK-GQVL---LDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQE 281 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~------g~eL~rVsvVd~~-G~vv---~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~ 281 (569)
.++++|||||+|..+ +.+|++|++|..+ |+++ |++||+|..+|+++.+++||||++||+++ +++.+|++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~-~~~~~v~~ 87 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDK-PTFAEVAD 87 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTS-CCHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCC-CCHHHHHH
Confidence 469999999999987 3799999999974 5553 89999999999999999999999999998 79999999
Q ss_pred HHHHhhcCCCEEEEeCchhhHHHHcc-------cC------CCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCC
Q 008340 282 EFLKLVYKETILVGHSLENDLLALKI-------SH------GLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF 348 (569)
Q Consensus 282 ~l~~ll~~~tILVGHsL~~DL~aLki-------~h------p~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~ 348 (569)
+|.+++ .+.+|||||+.||+.+|+. .. ..++||..+++...+ ..+++|..|++. ||++... ..
T Consensus 88 ~~~~~l-~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p-~~~~~L~~l~~~-~gi~~~~-~~ 163 (194)
T 2gui_A 88 EFMDYI-RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFP-GKRNSLDALCAR-YEIDNSK-RT 163 (194)
T ss_dssp HHHHHH-TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHST-TSCCSHHHHHHH-TTCCCTT-CS
T ss_pred HHHHHH-CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcC-CCCCCHHHHHHH-cCcCCCC-CC
Confidence 999999 7899999999999999984 11 258999988765432 235789999985 6887642 13
Q ss_pred CCChHHHHHHHHHHHHHHHHcC
Q 008340 349 GHDSTEDARAAMELALLKIRNG 370 (569)
Q Consensus 349 ~HdS~EDA~Atl~L~~~kl~~g 370 (569)
.|+|++||++|++||+..+++.
T Consensus 164 ~H~Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 164 LHGALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp SCCHHHHHHHHHHHHHHHTC--
T ss_pred CCChHHHHHHHHHHHHHHHhcc
Confidence 7999999999999998776543
No 4
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.89 E-value=2.9e-23 Score=199.42 Aligned_cols=160 Identities=15% Similarity=0.193 Sum_probs=133.5
Q ss_pred CCcEEEEEeceecCCC-----CceEEEEEEEEe---eCeEE--EEEEEecCC--CCCCCcEeecCCChhhhcCCCCCHHH
Q 008340 211 PYEILALDCEMCYTNE-----GLELTRVTLVDI---KGQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKD 278 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~-----g~eL~rVsvVd~---~G~vv--~D~lVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~d 278 (569)
...+++|||||+|..+ ..+|++|++|.. +|+++ |+.||+|.. +|+++.+++||||++||+++ +++.+
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~-~~~~~ 87 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQ 87 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTS-BCHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCC-CCHHH
Confidence 3579999999999985 368999998776 58887 999999998 99999999999999999998 79999
Q ss_pred HHHHHHHhhcCCC------EEEEeCchhhHH-HHcc-------cCC----CccchhhhccccCCC-CCCchHHHHHHHhc
Q 008340 279 IQEEFLKLVYKET------ILVGHSLENDLL-ALKI-------SHG----LVIDTAVLYKHPQGG-SHKTSLRVLAKKFL 339 (569)
Q Consensus 279 Vq~~l~~ll~~~t------ILVGHsL~~DL~-aLki-------~hp----~viDT~~L~~~~~g~-~~k~sLk~La~~~L 339 (569)
|..+|.+++.... +|||||..||+. +|+. ..| .++||..+|+...+. ...++|..|++. +
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~ 166 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-L 166 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-T
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHH-c
Confidence 9999999995443 599999999996 9873 233 589999988754332 234689999986 6
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHHcCCCCC
Q 008340 340 SREIQQSGFGHDSTEDARAAMELALLKIRNGPDFG 374 (569)
Q Consensus 340 g~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~fg 374 (569)
|++.+. ..|+|++||++|++||+..++++..+.
T Consensus 167 gi~~~~--~~H~Al~Da~~ta~l~~~l~~~~~~~~ 199 (204)
T 1w0h_A 167 GMDYDG--RPHCGLDDSKNIARIAVRMLQDGCELR 199 (204)
T ss_dssp TCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCC--CccCcHHHHHHHHHHHHHHHHCCCeee
Confidence 888752 379999999999999999999887664
No 5
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.86 E-value=1.8e-22 Score=198.77 Aligned_cols=152 Identities=18% Similarity=0.235 Sum_probs=122.0
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEeeC-----------------eEE--EEEEEecCCCCCCCcEeecCCChhhhc-
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDIKG-----------------QVL--LDKLVKPSNAIVDYNTRYSGITHEMLS- 270 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~~G-----------------~vv--~D~lVkP~~~I~dy~T~~SGIT~e~L~- 270 (569)
.++++|||||+|.... ++|++|++|..++ +++ |+.||+|..+|+++.+++||||++||.
T Consensus 10 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~ 89 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEGLAR 89 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHHHHH
T ss_pred CeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHHHhh
Confidence 4699999999999764 7999999998752 444 899999999999999999999999994
Q ss_pred -CCCCCH-HHHHHHHHHhhcC---CCEEEEeCc-hhhHHHHccc----------CCCccchhhhccccC---------CC
Q 008340 271 -GVTTSL-KDIQEEFLKLVYK---ETILVGHSL-ENDLLALKIS----------HGLVIDTAVLYKHPQ---------GG 325 (569)
Q Consensus 271 -~~~~tl-~dVq~~l~~ll~~---~tILVGHsL-~~DL~aLki~----------hp~viDT~~L~~~~~---------g~ 325 (569)
++ ++| ++|.++|.+++.. +.+|||||. .||+.+|+.. +..++||..+++... +.
T Consensus 90 ~~~-p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~ 168 (238)
T 1y97_A 90 CRK-AGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARG 168 (238)
T ss_dssp TTC-CCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC--------
T ss_pred cCC-CccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCC
Confidence 66 688 4999999999943 389999999 9999999831 125899998766542 12
Q ss_pred CCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHH
Q 008340 326 SHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKI 367 (569)
Q Consensus 326 ~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl 367 (569)
..+++|..|+++++|++.. +.|+|++||++|++|++..+
T Consensus 169 ~~~~~L~~l~~~~~gi~~~---~~H~Al~Da~~ta~l~~~l~ 207 (238)
T 1y97_A 169 RQGYSLGSLFHRYFRAEPS---AAHSAEGDVHTLLLIFLHRA 207 (238)
T ss_dssp --CCSHHHHHHHHHSSCCC------CHHHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHhCCCCc---cCccHHHHHHHHHHHHHHHH
Confidence 2567899999977798875 48999999999999997654
No 6
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.86 E-value=1.7e-22 Score=201.41 Aligned_cols=152 Identities=17% Similarity=0.227 Sum_probs=125.3
Q ss_pred CCcEEEEEeceecCCCC-ceEEEEEEEEee-C-------------------eE--EEEEEEecCCCCCCCcEeecCCChh
Q 008340 211 PYEILALDCEMCYTNEG-LELTRVTLVDIK-G-------------------QV--LLDKLVKPSNAIVDYNTRYSGITHE 267 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~g-~eL~rVsvVd~~-G-------------------~v--v~D~lVkP~~~I~dy~T~~SGIT~e 267 (569)
-..||+|||||+|.... ++|++|++|..+ | ++ .|+.||+|..+|+.+.+++||||++
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GIt~~ 90 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCCCHH
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCCCHH
Confidence 35699999999999754 799999999864 3 23 4899999999999999999999999
Q ss_pred hhcCCC-CCHH-HHHHHHHHhhcCC----CEEEEeC-chhhHHHHcc-------c---CC-CccchhhhccccC------
Q 008340 268 MLSGVT-TSLK-DIQEEFLKLVYKE----TILVGHS-LENDLLALKI-------S---HG-LVIDTAVLYKHPQ------ 323 (569)
Q Consensus 268 ~L~~~~-~tl~-dVq~~l~~ll~~~----tILVGHs-L~~DL~aLki-------~---hp-~viDT~~L~~~~~------ 323 (569)
||+++. +++. +|.++|.+++ .+ .+||||| +.||+.+|+. . ++ .++||..+++...
T Consensus 91 ~l~~~g~p~~~~ev~~~~~~fl-~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~ 169 (242)
T 3mxm_B 91 ELEVQGRQRFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (242)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC-
T ss_pred HHHhcCCCchhHHHHHHHHHHH-hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcc
Confidence 999875 5896 9999999999 66 8999999 5999999983 1 12 5799998765321
Q ss_pred --CCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHH
Q 008340 324 --GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366 (569)
Q Consensus 324 --g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~k 366 (569)
+...+++|..||++|+|++.. +.|+|++||+||++|+++.
T Consensus 170 ~~~~~~~~~L~~l~~~~~gi~~~---~~H~Al~Da~ata~l~~~~ 211 (242)
T 3mxm_B 170 GNGSRKSYSLGSIYTRLYWQAPT---DSHTAEGDDLTLLSICQWK 211 (242)
T ss_dssp -----CCCSHHHHHHHHHSSCCS---STTSHHHHHHHHHHHHTSS
T ss_pred ccCCCCCcCHHHHHHHHhCCCCC---CCcChHHHHHHHHHHHHHH
Confidence 224577899999888899876 3899999999999998643
No 7
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=200.78 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=133.4
Q ss_pred CcEEEEEeceecCCC-----CceEEEEEEEEee---CeEE--EEEEEecCC--CCCCCcEeecCCChhhhcCCCCCHHHH
Q 008340 212 YEILALDCEMCYTNE-----GLELTRVTLVDIK---GQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDI 279 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~-----g~eL~rVsvVd~~---G~vv--~D~lVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dV 279 (569)
..+++|||||+|... .++|++|++|..+ |+++ |++||+|.. +|+++.+++||||++||+++ +++.+|
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~a-p~~~ev 156 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQV 156 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTS-BCHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcC-CCHHHH
Confidence 469999999999862 3689999999874 5776 999999998 99999999999999999998 799999
Q ss_pred HHHHHHhhcCC------CEEEEeCchhhHH-HHcc-------cCC----CccchhhhccccCCCC-CCchHHHHHHHhcC
Q 008340 280 QEEFLKLVYKE------TILVGHSLENDLL-ALKI-------SHG----LVIDTAVLYKHPQGGS-HKTSLRVLAKKFLS 340 (569)
Q Consensus 280 q~~l~~ll~~~------tILVGHsL~~DL~-aLki-------~hp----~viDT~~L~~~~~g~~-~k~sLk~La~~~Lg 340 (569)
..+|.+++... .+|||||..||+. +|+. ..| .++||..+|+...+.+ ..++|..|+++ +|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHH-cC
Confidence 99999999554 5999999999999 9973 233 4899988887653322 23789999985 68
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHHcCCCCCC
Q 008340 341 REIQQSGFGHDSTEDARAAMELALLKIRNGPDFGS 375 (569)
Q Consensus 341 ~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~fg~ 375 (569)
++... ..|+|++||++|++||+..++++..+..
T Consensus 236 i~~~g--~~H~Al~DA~ata~l~~~l~~~~~~~~~ 268 (299)
T 1zbh_A 236 MDYDG--RPNCGLDDSKNIARIAVRMLQDGCELRI 268 (299)
T ss_dssp CCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCCC--CCCChHHHHHHHHHHHHHHHHhCCcCCh
Confidence 88752 3799999999999999999988765543
No 8
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.86 E-value=1.1e-21 Score=185.28 Aligned_cols=143 Identities=14% Similarity=0.109 Sum_probs=110.6
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEee--CeEE---EEEEEecCCCCCCCc-------EeecCCChhhhcCCCCCHHH
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDIK--GQVL---LDKLVKPSNAIVDYN-------TRYSGITHEMLSGVTTSLKD 278 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~~--G~vv---~D~lVkP~~~I~dy~-------T~~SGIT~e~L~~~~~tl~d 278 (569)
.++++|||||+|+.+. ++|++|++|..+ |+++ |+.||+|..+|++++ +++||||++||+++ +++++
T Consensus 5 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~-~~~~~ 83 (180)
T 2igi_A 5 NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAST-MGDRE 83 (180)
T ss_dssp GCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCC-CCHHH
T ss_pred CcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcC-CCHHH
Confidence 4699999999999876 689999988654 5565 899999999877665 66799999999998 79999
Q ss_pred HHHHHHHhhcC-----CCEEEEeCchhhHHHHccc--------CCCccc--hhh-hccccCCCCCCchHHHHHHHhcCcc
Q 008340 279 IQEEFLKLVYK-----ETILVGHSLENDLLALKIS--------HGLVID--TAV-LYKHPQGGSHKTSLRVLAKKFLSRE 342 (569)
Q Consensus 279 Vq~~l~~ll~~-----~tILVGHsL~~DL~aLki~--------hp~viD--T~~-L~~~~~g~~~k~sLk~La~~~Lg~~ 342 (569)
|+++|.+++.. +.+|||||+.||+.+|+.. |..++| |.. +.+... +.+. .|+.
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~-----p~~~------~~i~ 152 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWK-----PEIL------DGFT 152 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHC-----GGGG------GGSC
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhC-----hHhh------hCCC
Confidence 99999999954 4799999999999999853 334666 442 333221 1111 1332
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHc
Q 008340 343 IQQSGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 343 Iq~~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
. .++|+|++||+||++|+++++++
T Consensus 153 ~---~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 153 K---QGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp C---CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred C---cCCcCcHHHHHHHHHHHHHHHHH
Confidence 2 25899999999999999887664
No 9
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.86 E-value=7.4e-22 Score=193.91 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=129.1
Q ss_pred CcEEEEEeceecCCCC---ceEEEEEEEEee---CeEE--EEEEEecCC--CCCCCcEeecCCChhhhcCCCCCHHHHHH
Q 008340 212 YEILALDCEMCYTNEG---LELTRVTLVDIK---GQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDIQE 281 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g---~eL~rVsvVd~~---G~vv--~D~lVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dVq~ 281 (569)
..+++||+||+|..+. .+|++|++|..+ |+++ |+.||+|.. +|+++.+++||||++||+++ +++.+|.+
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a-~~~~~v~~ 109 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQ-PSLQQVLE 109 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTC-CCHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCC-CCHHHHHH
Confidence 4699999999999865 389999999764 3666 999999998 89999999999999999998 79999999
Q ss_pred HHHHhhcCCCEEEEeCc--------hhhHHH-Hc-------ccCC----CccchhhhccccCCCCCCchHHHHHHHhcCc
Q 008340 282 EFLKLVYKETILVGHSL--------ENDLLA-LK-------ISHG----LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSR 341 (569)
Q Consensus 282 ~l~~ll~~~tILVGHsL--------~~DL~a-Lk-------i~hp----~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~ 341 (569)
+|.+++ .+.+|||||+ .||+.+ |+ +..| .++|+...|...++...+++|..|++ ++|+
T Consensus 110 ~f~~~l-~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~-~~gi 187 (224)
T 2xri_A 110 RVDEWM-AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNK-GLSL 187 (224)
T ss_dssp HHHHHH-HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHH-HTTC
T ss_pred HHHHHH-hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHH-HcCC
Confidence 999999 6789999999 999997 74 2223 57895443332222222478999998 5688
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHcCCCCCCC
Q 008340 342 EIQQSGFGHDSTEDARAAMELALLKIRNGPDFGSP 376 (569)
Q Consensus 342 ~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~fg~~ 376 (569)
+.+. ..|+|++||++|++|++..+++|..|...
T Consensus 188 ~~~~--~~H~Al~DA~~ta~l~~~l~~~g~~~~it 220 (224)
T 2xri_A 188 QHIG--RPHSGIDDCKNIANIMKTLAYRGFIFKQT 220 (224)
T ss_dssp CCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCCC--CCcChHHHHHHHHHHHHHHHHcCCEEeec
Confidence 7642 47999999999999999999988776643
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.85 E-value=1.1e-21 Score=192.22 Aligned_cols=158 Identities=22% Similarity=0.208 Sum_probs=128.9
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEe----eCeE----EEEEEEec--CCCCCCCcEeecCCChh-hhcCCCCCHHHH
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDI----KGQV----LLDKLVKP--SNAIVDYNTRYSGITHE-MLSGVTTSLKDI 279 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~----~G~v----v~D~lVkP--~~~I~dy~T~~SGIT~e-~L~~~~~tl~dV 279 (569)
..+++|||||+|..+. .+|++|++|.. +|++ .|++||+| ..+|+.+.+++||||++ |++++ +++.+|
T Consensus 29 ~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~-~~~~~v 107 (224)
T 2f96_A 29 YLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMA-VQEEAA 107 (224)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCC-BCHHHH
T ss_pred CcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC-CCHHHH
Confidence 4689999999999876 69999999986 4774 38899999 67999999999999997 58887 799999
Q ss_pred HHHHHHhhc--------CCCEEEEeCchhhHHHHcc-------c-----CCCccchhhhccccCCCCCCchHHHHHHHhc
Q 008340 280 QEEFLKLVY--------KETILVGHSLENDLLALKI-------S-----HGLVIDTAVLYKHPQGGSHKTSLRVLAKKFL 339 (569)
Q Consensus 280 q~~l~~ll~--------~~tILVGHsL~~DL~aLki-------~-----hp~viDT~~L~~~~~g~~~k~sLk~La~~~L 339 (569)
..++.+++. ++.+|||||+.||+.+|+. . +..++||..+++...+ +++|..|++. +
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L~~l~~~-~ 183 (224)
T 2f96_A 108 LTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVLAKACQA-A 183 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHHH-T
T ss_pred HHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCHHHHHHH-c
Confidence 999998884 4789999999999999973 1 1258999998876543 3579999986 5
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHHcCCCCCC
Q 008340 340 SREIQQSGFGHDSTEDARAAMELALLKIRNGPDFGS 375 (569)
Q Consensus 340 g~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~fg~ 375 (569)
|+++.. ...|+|++||++|++||+..+++-+..|.
T Consensus 184 gi~~~~-~~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 218 (224)
T 2f96_A 184 GMEFDN-REAHSARYDTEKTAELFCGIVNRWKEMGG 218 (224)
T ss_dssp TCCCCT-TSCCCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcCC-CCCCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888642 25899999999999999877665443343
No 11
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.84 E-value=2.3e-21 Score=203.29 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=132.6
Q ss_pred CcEEEEEeceecCC-----CCceEEEEEEEEee---CeEE--EEEEEecCC--CCCCCcEeecCCChhhhcCCCCCHHHH
Q 008340 212 YEILALDCEMCYTN-----EGLELTRVTLVDIK---GQVL--LDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDI 279 (569)
Q Consensus 212 ~~~vAiDcEm~~t~-----~g~eL~rVsvVd~~---G~vv--~D~lVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dV 279 (569)
..+|+|||||+|.. ..++|++|++|..+ |+++ |++||+|.. +|+++.|++||||++||+++ ++|.+|
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~a-p~~~eV 206 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRA-DTFPQV 206 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTS-EEHHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCC-CCHHHH
Confidence 57899999999985 23689999999864 5766 889999998 99999999999999999998 799999
Q ss_pred HHHHHHhhcCC------CEEEEeCchhhHH-HHcc-------cCC----CccchhhhccccCCCC-CCchHHHHHHHhcC
Q 008340 280 QEEFLKLVYKE------TILVGHSLENDLL-ALKI-------SHG----LVIDTAVLYKHPQGGS-HKTSLRVLAKKFLS 340 (569)
Q Consensus 280 q~~l~~ll~~~------tILVGHsL~~DL~-aLki-------~hp----~viDT~~L~~~~~g~~-~k~sLk~La~~~Lg 340 (569)
..+|.+++... .+|||||..||+. +|+. ..| .++||..+|+...+.+ ..++|..|+++ +|
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHH-TT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-cC
Confidence 99999999544 5999999999999 9974 234 4799998887653322 23789999985 68
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHHcCCCCC
Q 008340 341 REIQQSGFGHDSTEDARAAMELALLKIRNGPDFG 374 (569)
Q Consensus 341 ~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~fg 374 (569)
++.+. ..|+|+.||+||++||+..++++..+.
T Consensus 286 i~~~g--~~HrAl~DA~ata~ll~~ll~~~~~~~ 317 (349)
T 1zbu_A 286 MDYDG--RPHCGLDDSKNIARIAVRMLQDGCELR 317 (349)
T ss_dssp CCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 88752 379999999999999999988876544
No 12
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.83 E-value=5.3e-21 Score=197.88 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=124.6
Q ss_pred CCcEEEEEeceecCCCC-ceEEEEEEEEeeCe----------------------EEEEEEEecCCCCCCCcEeecCCChh
Q 008340 211 PYEILALDCEMCYTNEG-LELTRVTLVDIKGQ----------------------VLLDKLVKPSNAIVDYNTRYSGITHE 267 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~g-~eL~rVsvVd~~G~----------------------vv~D~lVkP~~~I~dy~T~~SGIT~e 267 (569)
-..||+||+||+|.... ++|++|++|..++. .-|+.||+|..+|+.+.+++||||++
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGIT~e 90 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSKA 90 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSCCHH
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCCCHH
Confidence 35699999999999754 79999999987422 34899999999999999999999999
Q ss_pred hhcCCC-CCH-HHHHHHHHHhhcCC----CEEEEeC-chhhHHHHccc-------C----CCccchhhhcc----ccC--
Q 008340 268 MLSGVT-TSL-KDIQEEFLKLVYKE----TILVGHS-LENDLLALKIS-------H----GLVIDTAVLYK----HPQ-- 323 (569)
Q Consensus 268 ~L~~~~-~tl-~dVq~~l~~ll~~~----tILVGHs-L~~DL~aLki~-------h----p~viDT~~L~~----~~~-- 323 (569)
||+++. ++| ++|.++|.+|+ .+ .+||||| +.||+.+|+.. . ..++||..+++ ...
T Consensus 91 ~l~~aG~P~f~~ev~~~l~~fL-~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~ 169 (314)
T 3u3y_B 91 ELEVQGRQRFDDNLAILLRAFL-QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPS 169 (314)
T ss_dssp HHHHTTCCBSCHHHHHHHHHHH-HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC---
T ss_pred HHHhCCCCCcHHHHHHHHHHHH-hcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCcc
Confidence 999873 479 69999999999 56 8999999 99999999831 1 13899987544 211
Q ss_pred --CCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHH
Q 008340 324 --GGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLK 366 (569)
Q Consensus 324 --g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~k 366 (569)
+...+++|..||++|+|++.. ..|+|++||+||++||++.
T Consensus 170 ~~~~~~~~~L~~L~~~l~gi~~~---~aHrAl~DA~ata~lf~~l 211 (314)
T 3u3y_B 170 GNGSRKSYSLGSIYTRLYWQAPT---DSHTAEGHVLTLLSICQWK 211 (314)
T ss_dssp ----CCCCSHHHHHHHHHSSCCS---CSSSHHHHHHHHHHHHHSS
T ss_pred ccccCCCCCHHHHHHHhcCCCCC---CCCCHHHHHHHHHHHHHHH
Confidence 123578899999987899876 4899999999999999753
No 13
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.3e-20 Score=181.20 Aligned_cols=143 Identities=16% Similarity=0.213 Sum_probs=112.8
Q ss_pred CCcEEEEEeceecCCCC-ceEEEEEEEEeeCe--EE---EEEEEecCCCC----CCCcEee---cCCChhhhcCCCCCHH
Q 008340 211 PYEILALDCEMCYTNEG-LELTRVTLVDIKGQ--VL---LDKLVKPSNAI----VDYNTRY---SGITHEMLSGVTTSLK 277 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~g-~eL~rVsvVd~~G~--vv---~D~lVkP~~~I----~dy~T~~---SGIT~e~L~~~~~tl~ 277 (569)
..++++|||||+|..+. ++|++|++|..+|+ ++ |+.||+|..+| .+|.++. ||||++||+++ ++++
T Consensus 8 ~~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~-p~~~ 86 (194)
T 2gbz_A 8 NDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQ-VTHA 86 (194)
T ss_dssp CCEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCC-CCHH
T ss_pred CCCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcC-CCHH
Confidence 35799999999999875 69999999987776 34 67899999876 5666666 99999999998 7999
Q ss_pred HHHHHHHHhhcCCCE------EEEeCchhhHHHHcccCC--------CccchhhhccccCCCCCCchHHHHHHHhcCc--
Q 008340 278 DIQEEFLKLVYKETI------LVGHSLENDLLALKISHG--------LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSR-- 341 (569)
Q Consensus 278 dVq~~l~~ll~~~tI------LVGHsL~~DL~aLki~hp--------~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~-- 341 (569)
+|.++|.+++ .+.+ |||||+.||+.+|+...+ +.+|+. +|+.|++.|+..
T Consensus 87 ev~~~~~~~l-~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~-------------~l~~l~~~~~p~~~ 152 (194)
T 2gbz_A 87 QAEAQTVAFL-GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS-------------TIKELARRWAPAVA 152 (194)
T ss_dssp HHHHHHHHHH-TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH-------------HHHHHHHHHCGGGG
T ss_pred HHHHHHHHHH-HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH-------------HHHHHHHHhCHHHH
Confidence 9999999999 6777 999999999999986433 344543 355566655311
Q ss_pred -ccccCCCCCChHHHHHHHHHHHHHHHHc
Q 008340 342 -EIQQSGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 342 -~Iq~~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
.+.. .+.|+|++||+||++||++..++
T Consensus 153 ~~i~~-~~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 153 SGFAK-SSAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp TTCCC-CSCCSHHHHHHHHHHHHHHHHTT
T ss_pred hCCCC-CCCcccHHHHHHHHHHHHHHHHH
Confidence 1322 25899999999999999877654
No 14
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.82 E-value=4.1e-21 Score=197.96 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=129.3
Q ss_pred CcEEEEEeceecCCCC-c---eEEEEEEEEe---eCeEE----EEEEEecCCC--CCCCcEeecCCChhhhcCCCCCHHH
Q 008340 212 YEILALDCEMCYTNEG-L---ELTRVTLVDI---KGQVL----LDKLVKPSNA--IVDYNTRYSGITHEMLSGVTTSLKD 278 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~---eL~rVsvVd~---~G~vv----~D~lVkP~~~--I~dy~T~~SGIT~e~L~~~~~tl~d 278 (569)
.++++||+||+|...+ + +|++|++|.. +|+++ |++||+|... |+++.+++||||++||+++ +++.+
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~a-p~~~e 97 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTA-DTFDV 97 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTS-CBHHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcC-CCHHH
Confidence 4699999999999875 3 9999999875 56654 8999999985 9999999999999999998 79999
Q ss_pred HHHHHHHhhcCCCEEEEeCc------hhhH-HHHcc-------cCC----CccchhhhccccCCC------CCCchHHHH
Q 008340 279 IQEEFLKLVYKETILVGHSL------ENDL-LALKI-------SHG----LVIDTAVLYKHPQGG------SHKTSLRVL 334 (569)
Q Consensus 279 Vq~~l~~ll~~~tILVGHsL------~~DL-~aLki-------~hp----~viDT~~L~~~~~g~------~~k~sLk~L 334 (569)
|..+|.+++ .+.+|||||+ .||+ .+|+. ..| .++||..+|+...+. ..+++|..|
T Consensus 98 vl~~f~~~l-~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l 176 (308)
T 3cg7_A 98 VYEQFQQWL-ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKM 176 (308)
T ss_dssp HHHHHHHHH-HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHH
T ss_pred HHHHHHHHH-HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHH
Confidence 999999999 7788999999 9999 58862 233 479999887643211 125789999
Q ss_pred HHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHcCCCC
Q 008340 335 AKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNGPDF 373 (569)
Q Consensus 335 a~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g~~f 373 (569)
++ ++|++++. ..|+|++||++|++|++..++++..+
T Consensus 177 ~~-~~gi~~~~--~~HrAl~DA~ata~l~~~l~~~~~~~ 212 (308)
T 3cg7_A 177 NE-YYDLPTIG--RAHDAMDDCLNIATILQRMINMGAKV 212 (308)
T ss_dssp HH-HTTCCCCS--CTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HH-HcCCCCCC--CCcCHHHHHHHHHHHHHHHHHcCCCC
Confidence 97 56988763 35999999999999999888876544
No 15
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.81 E-value=8.7e-20 Score=179.65 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=126.3
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEe----eCeE----EEEEEEec--CCCCCCCcEeecCCChh-hhcCCCCCHHHH
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDI----KGQV----LLDKLVKP--SNAIVDYNTRYSGITHE-MLSGVTTSLKDI 279 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~----~G~v----v~D~lVkP--~~~I~dy~T~~SGIT~e-~L~~~~~tl~dV 279 (569)
..+++|||||+|..+. .+|++|++|.. +|++ -|+.||+| ..+|+.+.+++||||++ |++++ +++.++
T Consensus 37 ~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~-~~~~~v 115 (235)
T 3v9w_A 37 FYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGA-VSGYEA 115 (235)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCC-BCHHHH
T ss_pred CcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC-CCHHHH
Confidence 4699999999999765 69999999985 4664 27889999 67899999999999999 99998 799999
Q ss_pred HHHHHHhhc--------CCCEEEEeCchhhHHHHccc-------C-C----CccchhhhccccCCCCCCchHHHHHHHhc
Q 008340 280 QEEFLKLVY--------KETILVGHSLENDLLALKIS-------H-G----LVIDTAVLYKHPQGGSHKTSLRVLAKKFL 339 (569)
Q Consensus 280 q~~l~~ll~--------~~tILVGHsL~~DL~aLki~-------h-p----~viDT~~L~~~~~g~~~k~sLk~La~~~L 339 (569)
.++|..++. ++.+|||||+.||+.+|+.. . | .++||..+++...+ .++|..||+.|
T Consensus 116 l~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p---~~~L~~l~~~~- 191 (235)
T 3v9w_A 116 LHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG---QTVLSKACQTA- 191 (235)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS---CCSHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC---CCCHHHHHHHc-
Confidence 999999985 58999999999999999731 1 2 47899998776543 35799999965
Q ss_pred CcccccCCCCCChHHHHHHHHHHHHHHHHc
Q 008340 340 SREIQQSGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 340 g~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
|+++.. ...|+|++||++|++||...+++
T Consensus 192 gi~~~~-~~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 192 GMDFDS-TQAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp TCCCCT-TTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CCCcChHHHHHHHHHHHHHHHHH
Confidence 887652 24899999999999999876654
No 16
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.76 E-value=5.9e-19 Score=192.12 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=123.0
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEe--eCeEE---EEEEEecCCCC--CCCcEeecCCChhhhcCCCCCHHHHHHHH
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDI--KGQVL---LDKLVKPSNAI--VDYNTRYSGITHEMLSGVTTSLKDIQEEF 283 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~--~G~vv---~D~lVkP~~~I--~dy~T~~SGIT~e~L~~~~~tl~dVq~~l 283 (569)
..+++|||||+|..+. ++|++|++|.. +|+++ |+.||+|..+| ....+++||||++||.++++.+.+|..+|
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHH
Confidence 4699999999999876 79999999986 47777 99999999988 45678999999999998766779999999
Q ss_pred HHhhc-CCCEEEEeC-chhhHHHHccc------C---------CCccchhhhccccC-----C--------CCCCchHHH
Q 008340 284 LKLVY-KETILVGHS-LENDLLALKIS------H---------GLVIDTAVLYKHPQ-----G--------GSHKTSLRV 333 (569)
Q Consensus 284 ~~ll~-~~tILVGHs-L~~DL~aLki~------h---------p~viDT~~L~~~~~-----g--------~~~k~sLk~ 333 (569)
.+++. ++++||||| +.||+.+|+.. . ..++||..+++... + ...+++|..
T Consensus 89 ~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~ 168 (482)
T 2qxf_A 89 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 168 (482)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHH
Confidence 99995 489999999 99999999731 1 23578876543211 0 123568999
Q ss_pred HHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHcC
Q 008340 334 LAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNG 370 (569)
Q Consensus 334 La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g 370 (569)
|++. +|++.. ++|+|++||+||++|++...++.
T Consensus 169 L~~~-~Gi~~~---~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 169 LTKA-NGIEHS---NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp HHHH-TTCCCC------CTTHHHHHHHHHHHHHHHHS
T ss_pred HHHH-cCCCCC---CCCCHHHHHHHHHHHHHHHHHhC
Confidence 9985 588764 48999999999999998776653
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.74 E-value=1.8e-18 Score=166.61 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=109.7
Q ss_pred CCcEEEEEeceecCCCC-ceEEEEEEEEeeC--eEE---EEEEEe-cCC---CCCCC---cEeecCCChhhhcCCCCCHH
Q 008340 211 PYEILALDCEMCYTNEG-LELTRVTLVDIKG--QVL---LDKLVK-PSN---AIVDY---NTRYSGITHEMLSGVTTSLK 277 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~g-~eL~rVsvVd~~G--~vv---~D~lVk-P~~---~I~dy---~T~~SGIT~e~L~~~~~tl~ 277 (569)
..++|+|||||+|+++. ++|++|++|-.+| +++ +..+|+ |.. .+..+ .+.+||||.+||+++ ++++
T Consensus 8 ~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~-p~~~ 86 (186)
T 3tr8_A 8 DDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSS-VDEV 86 (186)
T ss_dssp TTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCC-CCHH
T ss_pred CCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcC-CCHH
Confidence 34699999999999865 7899998886555 443 344686 542 23455 445679999999998 7999
Q ss_pred HHHHHHHHhhc-----CCCEEEEeCchhhHHHHcc--------cCCCccc--hhh-hccccCCCCCCchHHHHHHHhcCc
Q 008340 278 DIQEEFLKLVY-----KETILVGHSLENDLLALKI--------SHGLVID--TAV-LYKHPQGGSHKTSLRVLAKKFLSR 341 (569)
Q Consensus 278 dVq~~l~~ll~-----~~tILVGHsL~~DL~aLki--------~hp~viD--T~~-L~~~~~g~~~k~sLk~La~~~Lg~ 341 (569)
+|.++|++|+. ++++|||||+.||+.+|+. .|.+++| |.. |.+... |.+.. |+
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~-----P~~~~------~~ 155 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWA-----PQIAA------AH 155 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHC-----HHHHT------TS
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHC-----ccccc------cC
Confidence 99999999995 7899999999999999984 2557899 665 655432 22221 44
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHc
Q 008340 342 EIQQSGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 342 ~Iq~~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
+.. +.|+|++||+||.++++++.+.
T Consensus 156 ~~~---~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 156 IKE---SQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp CCC---CCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CCcChHHHHHHHHHHHHHHHHH
Confidence 433 5899999999999999988775
No 18
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.40 E-value=2.1e-06 Score=95.79 Aligned_cols=142 Identities=19% Similarity=0.204 Sum_probs=97.4
Q ss_pred cEEEEEeceecCCC-CceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCC-
Q 008340 213 EILALDCEMCYTNE-GLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKE- 290 (569)
Q Consensus 213 ~~vAiDcEm~~t~~-g~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~- 290 (569)
.++++|+||++... ..+|+.|+++-.+|+.. ||.+.. .+ .|+ .+. .++.++...|..++...
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~---yip~~~---~~----~~~-----~~~-l~~~~vl~~L~~~L~d~~ 90 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFAIEPGVAA---YIPVAH---DY----LDA-----PDQ-ISRERALELLKPLLEDEK 90 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEEEETTEEE---EEECCC---CS----TTC-----CCC-CCHHHHHHHHHHHHTCTT
T ss_pred CeEEEEEecCCCCcccCceEEEEEEEcCCcEE---EEeccc---cc----ccc-----ccc-cCHHHHHHHHHHHHcCCC
Confidence 47999999999865 45788888885566654 452221 11 122 122 46888999999999432
Q ss_pred CEEEEeCchhhHHHHcc---cCC-CccchhhhccccCCCCCCchHHHHHHHhcCcccc-------cCCC-----------
Q 008340 291 TILVGHSLENDLLALKI---SHG-LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQ-------QSGF----------- 348 (569)
Q Consensus 291 tILVGHsL~~DL~aLki---~hp-~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq-------~~~~----------- 348 (569)
.++||||+.+|+.+|+. .-+ .++||..+.........+++|..||+.|||.... .+..
T Consensus 91 i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~ 170 (605)
T 2kfn_A 91 ALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 170 (605)
T ss_dssp SCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHH
T ss_pred CeEEEECcHHHHHHHHHCCCCCCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCHHH
Confidence 38999999999999974 222 4899998754443223468899999999886531 1000
Q ss_pred -CCChHHHHHHHHHHHHHHHHcC
Q 008340 349 -GHDSTEDARAAMELALLKIRNG 370 (569)
Q Consensus 349 -~HdS~EDA~Atl~L~~~kl~~g 370 (569)
.|.+.+||.++++|+....++-
T Consensus 171 ~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 171 AGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1447899999999997766553
No 19
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.29 E-value=3.7e-06 Score=81.20 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=95.1
Q ss_pred CCcEEEEEeceecCCCCceEEEEEEEEeeCeEEEEEEEe-cCCCCCCCcEe--ecCCChhhhcCCCCCHHHHHHHHHHhh
Q 008340 211 PYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVK-PSNAIVDYNTR--YSGITHEMLSGVTTSLKDIQEEFLKLV 287 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~g~eL~rVsvVd~~G~vv~D~lVk-P~~~I~dy~T~--~SGIT~e~L~~~~~tl~dVq~~l~~ll 287 (569)
+-.-|.+|||+++.....+|+.|.+|.++|...|-..-- +...+.+|+.+ +.++...-.... .++.+++.+|.+||
T Consensus 21 ~m~r~FlDTEFt~d~~~~eLISIGlV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~-~s~~~i~~~L~~FL 99 (190)
T 4hec_A 21 SMVRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLW-RSRQQIRLDLEEFL 99 (190)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEEEEEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTE-ECHHHHHHHHHHHT
T ss_pred ceeEEEEeeeecCCCCCCCEEEEEEEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCccccc-CCHHHHHHHHHHHH
Confidence 344578999999966667999999999999876544321 12233445432 455543333333 48899999999999
Q ss_pred cCC----CEEEEeCchhhHHHHcccCCCccchhhhccccCCCCCCchHHHHHHHhcCcc-ccc-CCCCCChHHHHHHHHH
Q 008340 288 YKE----TILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSRE-IQQ-SGFGHDSTEDARAAME 361 (569)
Q Consensus 288 ~~~----tILVGHsL~~DL~aLki~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~-Iq~-~~~~HdS~EDA~Atl~ 361 (569)
... ..|+++...+|..+|...-....+ .+.. -+.+...|+.+... +|.. +.. .++.|+|+.||++.+.
T Consensus 100 ~~~~~~~~eLwa~~~~yD~~~L~ql~g~m~~----lP~~-~p~~~~dlr~~~~~-~g~~~lp~~~~~~H~AL~DAR~n~~ 173 (190)
T 4hec_A 100 RIDGTDSIELWAWVGAYDHVALCQLWGPMTA----LPPT-VPRFTRELRQLWED-RGCPRMPPRPRDVHDALVDARDQLR 173 (190)
T ss_dssp TTTSSCEEEEEESSCHHHHHHHHTTTSSGGG----SCTT-SCSSCEEHHHHHHH-TTCCCCCC-----CCHHHHHHHHHH
T ss_pred HhcCCCCCEEEEecccccHHHHHHHhccccc----CCcc-cchhhHHHHHHHHH-cCCCCCCCCCCCCcCcHHHHHHHHH
Confidence 432 369999999999998753211111 1111 12234468887764 4543 221 2356999999999999
Q ss_pred HHHHHH
Q 008340 362 LALLKI 367 (569)
Q Consensus 362 L~~~kl 367 (569)
.++.+.
T Consensus 174 ~~~~~~ 179 (190)
T 4hec_A 174 RFRLIT 179 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 986553
No 20
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.22 E-value=8.1e-07 Score=100.77 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=93.4
Q ss_pred EEEEEeceecCCCC-ceEEEEEEEEee-CeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCCC
Q 008340 214 ILALDCEMCYTNEG-LELTRVTLVDIK-GQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKET 291 (569)
Q Consensus 214 ~vAiDcEm~~t~~g-~eL~rVsvVd~~-G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~t 291 (569)
+||||+||+|.... ++|+-|.+++.. |++. ++.|. .+.++.+.|..++.++.
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~---~~~p~-----------------------~i~~~l~~L~~~l~~~~ 54 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYV---SYRPS-----------------------DFGAYLDALEAEVARGG 54 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEE---EECGG-----------------------GHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEE---EEChH-----------------------HHHHHHHHHHHHHhcCC
Confidence 58999999999764 688888888854 3332 22222 23445677778776667
Q ss_pred EEEEeCc-hhhHHHHccc-----------C-CCccchhhhccccCCCCCCchHHHHHHHhc-------Cccc-----c--
Q 008340 292 ILVGHSL-ENDLLALKIS-----------H-GLVIDTAVLYKHPQGGSHKTSLRVLAKKFL-------SREI-----Q-- 344 (569)
Q Consensus 292 ILVGHsL-~~DL~aLki~-----------h-p~viDT~~L~~~~~g~~~k~sLk~La~~~L-------g~~I-----q-- 344 (569)
++||||+ .||+.+|+.. . ..++||.++.........+++|..||+.|| |..+ .
T Consensus 55 ~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~ 134 (698)
T 1x9m_A 55 LIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYK 134 (698)
T ss_dssp CEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHH
T ss_pred eEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHH
Confidence 8999999 9999998522 2 258999987554332234678999999887 5332 1
Q ss_pred ---------cCCC--------------CCChHHHHHHHHHHHHHHHHcCCCCCC
Q 008340 345 ---------QSGF--------------GHDSTEDARAAMELALLKIRNGPDFGS 375 (569)
Q Consensus 345 ---------~~~~--------------~HdS~EDA~Atl~L~~~kl~~g~~fg~ 375 (569)
.+.. .|.+.+||.++++|+....++-..+|.
T Consensus 135 ~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 135 DDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred HHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1101 245789999999999888776666664
No 21
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=97.71 E-value=0.00013 Score=78.33 Aligned_cols=128 Identities=10% Similarity=-0.034 Sum_probs=80.9
Q ss_pred CcEEEEEeceecCCCC-ceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhh-cC
Q 008340 212 YEILALDCEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLV-YK 289 (569)
Q Consensus 212 ~~~vAiDcEm~~t~~g-~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll-~~ 289 (569)
...||||+|+...... ..++-|.+-..++.. +|.|-.. + .++ ..|..++ ++
T Consensus 129 ~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~----lidpl~l---------~---~~l-----------~~L~~lL~dp 181 (428)
T 3saf_A 129 CQEFAVNLEHHSYRSFLGLTCLMQISTRTEDF----IIDTLEL---------R---SDM-----------YILNESLTDP 181 (428)
T ss_dssp CSEEEEEEEEECTTCSSCEEEEEEEECSSCEE----EEETTTT---------G---GGG-----------GGGHHHHTCT
T ss_pred CCeEEEEEEecCCCCCCCeEEEEEEEeCCcEE----EEEeccc---------h---hhH-----------HHHHHHHcCC
Confidence 3589999999876543 355555555433332 4444331 0 111 2344455 34
Q ss_pred CCEEEEeCchhhHHHHc----ccCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCC----CC---------Ch
Q 008340 290 ETILVGHSLENDLLALK----ISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF----GH---------DS 352 (569)
Q Consensus 290 ~tILVGHsL~~DL~aLk----i~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~----~H---------dS 352 (569)
+-+-|||++.+|+.+|. +.-..++||.+..... +.. +++|..|+++|||+.+..+.. +. -|
T Consensus 182 ~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL-~~~-~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YA 259 (428)
T 3saf_A 182 AIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL-NLG-RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYA 259 (428)
T ss_dssp TSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHT-TCS-CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHH
T ss_pred CceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHh-CCC-CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHH
Confidence 45579999999999995 2223588999765544 332 579999999999999865211 11 24
Q ss_pred HHHHHHHHHHHHHHHH
Q 008340 353 TEDARAAMELALLKIR 368 (569)
Q Consensus 353 ~EDA~Atl~L~~~kl~ 368 (569)
.+||.+++.|+.....
T Consensus 260 A~DA~~ll~L~~~L~~ 275 (428)
T 3saf_A 260 RDDTHYLLYIYDKMRL 275 (428)
T ss_dssp HHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5888999988865443
No 22
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=97.61 E-value=5.5e-05 Score=83.56 Aligned_cols=117 Identities=14% Similarity=0.009 Sum_probs=85.3
Q ss_pred cEEEEEeceecCCCC-ceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCCC
Q 008340 213 EILALDCEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKET 291 (569)
Q Consensus 213 ~~vAiDcEm~~t~~g-~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~t 291 (569)
+.+|+|+|+.+...- .+++-|++-. .|+. | +| . ++...|..++ .+.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a-~--~i----------------~------------~~l~~l~~~l-~d~ 57 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRV-H--RA----------------P------------EPYKALRDLK-EAR 57 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEE-E--EC----------------S------------SHHHHHTTCS-SBC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEE-E--Ee----------------h------------hhHHHHHHHH-cCC
Confidence 458999999998764 4677777774 4543 2 11 0 2456788888 558
Q ss_pred EEEEeCchhhHHHHcccCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHcC
Q 008340 292 ILVGHSLENDLLALKISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRNG 370 (569)
Q Consensus 292 ILVGHsL~~DL~aLki~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~g 370 (569)
.+||||+.+|+....+.-+.++||.++..-.. +. +++|..||++||+. + +|.+.+||.++++|+....++-
T Consensus 58 ~kV~hn~K~Dl~~~Gi~~~~~fDT~laAyLL~-p~-~~~L~~La~~yl~~-~-----gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 58 GLLAKDLSVLALREGLGLPPGDDPMLLAYLLD-PS-NTTPEGVARRYGGE-W-----TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp STTHHHHHHHHHHTTCCCCBCCCHHHHHHHHC-TT-CCCHHHHHHHHTSC-C-----CSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEeccHHHHHHcCCCCCcceeHHHHHHHhC-CC-CCCHHHHHHHHhhh-h-----ccchHHHHHHHHHHHHHHHHHH
Confidence 89999999999933333235789997654442 23 78999999999886 2 6889999999999997766654
No 23
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=97.42 E-value=0.00026 Score=68.83 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHhh-cCCCEEEEeCchhhHHHHcccC----CCccchhhhccccCCC--CCCchHHHHHHHhcCccc-cc----CC---
Q 008340 283 FLKLV-YKETILVGHSLENDLLALKISH----GLVIDTAVLYKHPQGG--SHKTSLRVLAKKFLSREI-QQ----SG--- 347 (569)
Q Consensus 283 l~~ll-~~~tILVGHsL~~DL~aLki~h----p~viDT~~L~~~~~g~--~~k~sLk~La~~~Lg~~I-q~----~~--- 347 (569)
|.+++ +++-+.|||++.+|++.|+-.+ ..++||..++....|. ..+.||+.|++.+||+++ .. +.
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~ 179 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEK 179 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGG
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCC
Confidence 44555 4567789999999999997532 3689998776443343 356799999999999999 21 10
Q ss_pred -----CCCChHHHHHHHHHHHHHHH
Q 008340 348 -----FGHDSTEDARAAMELALLKI 367 (569)
Q Consensus 348 -----~~HdS~EDA~Atl~L~~~kl 367 (569)
.-+=|..||.++.+||....
T Consensus 180 pLs~~Qi~YAA~Da~~l~~l~~~L~ 204 (206)
T 1vk0_A 180 AGPEEQLEAAAIEGWLIVNVWDQLS 204 (206)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 12335688899998886543
No 24
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=97.27 E-value=0.00021 Score=68.31 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=58.4
Q ss_pred HHHHhhc-CCCEEEEeCchhhHHHHcc----cCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccC---------C
Q 008340 282 EFLKLVY-KETILVGHSLENDLLALKI----SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQS---------G 347 (569)
Q Consensus 282 ~l~~ll~-~~tILVGHsL~~DL~aLki----~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~---------~ 347 (569)
.|..++. ++.+.|||++.+|+.+|+- ....++|...++.+..++..+++|..|++.|||..+..+ .
T Consensus 87 ~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~ 166 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSN 166 (208)
T ss_dssp HHHHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHTSCTTS
T ss_pred HHHHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCCCCeeeCCCCC
Confidence 4666663 3457899999999999964 222489943344433333457899999999998776221 0
Q ss_pred ------CCCChHHHHHHHHHHHHHHHHcC
Q 008340 348 ------FGHDSTEDARAAMELALLKIRNG 370 (569)
Q Consensus 348 ------~~HdS~EDA~Atl~L~~~kl~~g 370 (569)
..+-+..||.+++.|+....++-
T Consensus 167 ~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 167 FPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00114589999999986655543
No 25
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=96.94 E-value=0.0041 Score=65.11 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=79.2
Q ss_pred cEEEEEeceecCCC-CceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhc-CC
Q 008340 213 EILALDCEMCYTNE-GLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVY-KE 290 (569)
Q Consensus 213 ~~vAiDcEm~~t~~-g~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~-~~ 290 (569)
.+|++|+|+..... ...++-|.+-. .+.+. +|.|. .+ . . + ..|..++. ++
T Consensus 23 ~~va~D~E~~~~~~~~~~l~liqla~-~~~~~---lid~~-----------~l-----~-~---~----~~L~~ll~d~~ 74 (375)
T 1yt3_A 23 PAIALDTEFVRTRTYYPQLGLIQLFD-GEHLA---LIDPL-----------GI-----T-D---W----SPLKAILRDPS 74 (375)
T ss_dssp SEEEEEEEEECCSCSSCEEEEEEEEC-SSCEE---EECGG-----------GC-----S-C---C----HHHHHHHHCTT
T ss_pred CeEEEEeeecCCCcCCCceEEEEEec-CCcEE---EEeCC-----------CC-----C-C---h----HHHHHHHcCCC
Confidence 58999999987644 23455544443 22221 23321 11 1 1 1 23556663 34
Q ss_pred CEEEEeCchhhHHHHcc----cCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCC----CC---C------hH
Q 008340 291 TILVGHSLENDLLALKI----SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF----GH---D------ST 353 (569)
Q Consensus 291 tILVGHsL~~DL~aLki----~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~----~H---d------S~ 353 (569)
.+.||||+.+|+.+|.- ....++||...+... ++..+++|..|++.|||..+..+.. .. . +.
T Consensus 75 i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL-~~~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa 153 (375)
T 1yt3_A 75 ITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFC-GRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAA 153 (375)
T ss_dssp SEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHT-TCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHH
T ss_pred ceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHc-CCCCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHH
Confidence 56899999999999963 223678999765433 4445789999999999988764210 00 1 35
Q ss_pred HHHHHHHHHHHHHHHc
Q 008340 354 EDARAAMELALLKIRN 369 (569)
Q Consensus 354 EDA~Atl~L~~~kl~~ 369 (569)
.||.+++.|+....++
T Consensus 154 ~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 154 ADVWYLLPITAKLMVE 169 (375)
T ss_dssp HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888655443
No 26
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=96.59 E-value=0.014 Score=61.38 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=87.0
Q ss_pred CCcEEEEEeceecCC------CCceEEEEEEEEeeCeEE-EEEEEecC-CCCCCCcE---------eecCCChhhh----
Q 008340 211 PYEILALDCEMCYTN------EGLELTRVTLVDIKGQVL-LDKLVKPS-NAIVDYNT---------RYSGITHEML---- 269 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~------~g~eL~rVsvVd~~G~vv-~D~lVkP~-~~I~dy~T---------~~SGIT~e~L---- 269 (569)
+.+++++|+|+.+.. ..++|..|++++..+... .-.+|+++ .....|.. .+....+...
T Consensus 105 ~l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~ 184 (388)
T 1noy_A 105 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVI 184 (388)
T ss_dssp GCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred CeEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCeE
Confidence 457999999998711 124899999998754431 11245432 11111111 0111111111
Q ss_pred -cCCCCCHHHHHHHHHHhhc--CCCEEEEeCc-hhhHHHHcc----------c-------------C-------------
Q 008340 270 -SGVTTSLKDIQEEFLKLVY--KETILVGHSL-ENDLLALKI----------S-------------H------------- 309 (569)
Q Consensus 270 -~~~~~tl~dVq~~l~~ll~--~~tILVGHsL-~~DL~aLki----------~-------------h------------- 309 (569)
... .+-.++..++.+++. .-.||||||. .||+.+|.- . +
T Consensus 185 v~~~-~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~ 263 (388)
T 1noy_A 185 YMPF-DNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSID 263 (388)
T ss_dssp EEEE-SCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEET
T ss_pred EEEc-CCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEc
Confidence 122 356677777887773 3479999998 779976431 0 0
Q ss_pred CC-ccchhhhccc-cCCCCCCchHHHHHHHhcCcccccCCCCC-C----------------hHHHHHHHHHHHHH
Q 008340 310 GL-VIDTAVLYKH-PQGGSHKTSLRVLAKKFLSREIQQSGFGH-D----------------STEDARAAMELALL 365 (569)
Q Consensus 310 p~-viDT~~L~~~-~~g~~~k~sLk~La~~~Lg~~Iq~~~~~H-d----------------S~EDA~Atl~L~~~ 365 (569)
.+ ++|+..+++. ...+...++|+.+|+++||..-. .| . ++.||..+++|+.+
T Consensus 264 GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~----d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 264 GVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL----PYDGPINKLRETNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp TSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC----CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC----CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 01 5677666665 22224568899999999997532 12 2 46688888888754
No 27
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=96.51 E-value=0.0097 Score=63.38 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=57.6
Q ss_pred HHHhhc-CCCEEEEeCchhhHHHHcc----cCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCC----CC---
Q 008340 283 FLKLVY-KETILVGHSLENDLLALKI----SHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF----GH--- 350 (569)
Q Consensus 283 l~~ll~-~~tILVGHsL~~DL~aLki----~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~----~H--- 350 (569)
|..++. ++.+-|||++.+|+.+|.- ....++||.+.+... ++. +++|..|++.|||..+..+.. ..
T Consensus 151 L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL-~~~-~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL 228 (410)
T 2hbj_A 151 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAI-GLP-RHSLAYLLENFANFKTSKKYQLADWRIRPL 228 (410)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHH-TCS-CCSHHHHHHHHSCCCCCCTTTTSCTTCSSC
T ss_pred HHHHHcCCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHh-CCC-ccCHHHHHHHHcCCCCCccccccCCCCCCC
Confidence 555553 3456799999999999953 223489999765443 332 689999999999988754210 01
Q ss_pred C------hHHHHHHHHHHHHHHHHc
Q 008340 351 D------STEDARAAMELALLKIRN 369 (569)
Q Consensus 351 d------S~EDA~Atl~L~~~kl~~ 369 (569)
. +..||.+++.|+....++
T Consensus 229 ~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 229 SKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 357888888888654443
No 28
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=96.45 E-value=0.0029 Score=72.58 Aligned_cols=139 Identities=17% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCcEEEEEeceecC---CC-CceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHh
Q 008340 211 PYEILALDCEMCYT---NE-GLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKL 286 (569)
Q Consensus 211 ~~~~vAiDcEm~~t---~~-g~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~l 286 (569)
+.+++++|+||++. ++ .++|..||+++.++..++- +..|..+.+... .+-.++...+.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t---------------~~~i~~~~v~~~-~~E~~LL~~f~~~ 197 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVIT---------------WKKIDLPYVDVV-STEKEMIKRFLRV 197 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEE---------------SSCCCCSSEEEC-SCHHHHHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEe---------------eccccccceEEc-CCHHHHHHHHHHH
Confidence 56799999999983 22 2689999998766543321 011222234444 4666777777777
Q ss_pred hcC--CCEEEEeCc-hhhHHHHcc-------cC-----------------------C-CccchhhhccccCCCCCCchHH
Q 008340 287 VYK--ETILVGHSL-ENDLLALKI-------SH-----------------------G-LVIDTAVLYKHPQGGSHKTSLR 332 (569)
Q Consensus 287 l~~--~tILVGHsL-~~DL~aLki-------~h-----------------------p-~viDT~~L~~~~~g~~~k~sLk 332 (569)
+.. -.||||||. .||+.+|.- .. . .++|+..+++... ....++|.
T Consensus 198 i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~-~l~sysL~ 276 (775)
T 1qht_A 198 VREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTI-NLPTYTLE 276 (775)
T ss_dssp HHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHS-CCSCCCHH
T ss_pred HHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhc-CcCcCCHH
Confidence 742 249999997 679987652 11 1 1457766655432 23467899
Q ss_pred HHHHHhcCcccccC---------CCC-------CChHHHHHHHHHHHHHH
Q 008340 333 VLAKKFLSREIQQS---------GFG-------HDSTEDARAAMELALLK 366 (569)
Q Consensus 333 ~La~~~Lg~~Iq~~---------~~~-------HdS~EDA~Atl~L~~~k 366 (569)
.+|+++||..-..- ..+ +-++.||..++.|+...
T Consensus 277 ~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~ 326 (775)
T 1qht_A 277 AVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREF 326 (775)
T ss_dssp HHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999753310 011 12367999999987543
No 29
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=96.34 E-value=0.028 Score=60.42 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=59.3
Q ss_pred HHHHHhhcCCCEEEEeCchhhHHHHc---ccCCCccchhhhccccCCCCCCchHHHHHHHhcCcccccCCC-------CC
Q 008340 281 EEFLKLVYKETILVGHSLENDLLALK---ISHGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGF-------GH 350 (569)
Q Consensus 281 ~~l~~ll~~~tILVGHsL~~DL~aLk---i~hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~-------~H 350 (569)
..|..++ .+...|||++.+|+.+|+ +..+.++||.... +..++. +++|..|++.|||..+..+.. .-
T Consensus 85 ~~L~~lL-~d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa-~lL~~~-~~gL~~L~~~~lg~~~~K~~~~sdw~~rpL 161 (440)
T 3cym_A 85 NDFNRAV-GDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAA-RLLGLK-RFGLAAVTEHFLGLTLAKEHSAADWSYRPL 161 (440)
T ss_dssp HHHHHHH-TTCEEEESSHHHHHHHHHHHTCCCCEEEEHHHHH-HHTTCS-SCSHHHHHHHHHCEECCCCCTTCCTTCSSC
T ss_pred HHHHHHH-CCCCEEEEcCHHHHHHHHHcCCcCCceehHHHHH-HHhCCC-CCCHHHHHHHHhCCCcccccccCCCcCCCC
Confidence 3466777 555799999999999996 2233688996543 333443 789999999999987664210 11
Q ss_pred C------hHHHHHHHHHHHHHHHHc
Q 008340 351 D------STEDARAAMELALLKIRN 369 (569)
Q Consensus 351 d------S~EDA~Atl~L~~~kl~~ 369 (569)
. +..||.++++||.....+
T Consensus 162 s~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 162 PRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 468888889888655443
No 30
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=96.13 E-value=0.0025 Score=71.07 Aligned_cols=127 Identities=16% Similarity=0.107 Sum_probs=81.5
Q ss_pred EEEEEeceecCCCC-ceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhh-cCCC
Q 008340 214 ILALDCEMCYTNEG-LELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLV-YKET 291 (569)
Q Consensus 214 ~vAiDcEm~~t~~g-~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll-~~~t 291 (569)
-.++|+|+.+.... .+|+-|++-... +. .||.+.. ..+...|..++ +++.
T Consensus 31 ~~aldtE~~~~~~~~a~Lvgisla~~~-~a---~yIp~~~------------------------~~~l~~Lk~lLed~~i 82 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVGIAVVNEH-GR---FFLRPET------------------------ALADPQFVAWLGDETK 82 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCEEEEEETT-EE---EEECHHH------------------------HTTCHHHHHHHTCTTS
T ss_pred CcEEEEEEcCCccCcccEEEEEEEcCC-ce---EEEccch------------------------hhHHHHHHHHHhCCCC
Confidence 45899999988765 467777776543 22 2442211 11223466666 3446
Q ss_pred EEEEeCchhhHHHHcc---c-CCCccchhhhccccCCCCCCchHHHHHHHhcCcccccC----CCC------------CC
Q 008340 292 ILVGHSLENDLLALKI---S-HGLVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQS----GFG------------HD 351 (569)
Q Consensus 292 ILVGHsL~~DL~aLki---~-hp~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~----~~~------------Hd 351 (569)
..||||+.+|+.+|+. . ...+.||.+...-......+++|..||++|||.++... +.| +-
T Consensus 83 ~KV~hn~K~Dl~vL~~~Gi~l~g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~Y 162 (592)
T 3pv8_A 83 KKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEH 162 (592)
T ss_dssp EEEESSHHHHHHHHHHTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHH
T ss_pred eEEEechHHHHHHHHHcCCCCCCccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHH
Confidence 8999999999999963 2 22478998754332222235789999999999886531 111 23
Q ss_pred hHHHHHHHHHHHHHHHH
Q 008340 352 STEDARAAMELALLKIR 368 (569)
Q Consensus 352 S~EDA~Atl~L~~~kl~ 368 (569)
+.+||.++++|+.....
T Consensus 163 Aa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 163 LVRKAAAIWELERPFLD 179 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999865443
No 31
>2i09_A Phosphopentomutase; structural genomics, target T1865, NYSGXRC, PSI, protein structure initiative; 2.00A {Streptococcus mutans} PDB: 3m7v_A
Probab=96.11 E-value=0.026 Score=60.18 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=83.4
Q ss_pred CCCCCchhHHHHHHHHHhcCCeeeeeccccccccccCCCccee-ecCChHHHHHHHHHhccC-CCc-cEEEEeccccchh
Q 008340 373 FGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAI-PVSSDDEVLSKARKEVKN-DRI-HFVWTQFSELNLH 449 (569)
Q Consensus 373 fg~~~~~~~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~i-~~~~D~ev~~~~~~~v~~-~~~-~f~~~~~~~l~~~ 449 (569)
|+..+. ...++++|.+.|.....|........ +++-+.++ +..+++++++++++.++. ... +|++++|.+....
T Consensus 224 y~~~p~--~pTvld~L~~aG~~V~~VGKi~Dif~-g~GiT~~~~~~~~~~e~~d~~i~~l~~~~~~~dfi~vn~~~~Dm~ 300 (403)
T 2i09_A 224 YALSPF--APTVLNKLADAGVSTYAVGKINDIFN-GSGITNDMGHNKSNSHGVDTLIKTMGLSAFTKGFSFTNLVDFDAL 300 (403)
T ss_dssp EECCCS--SCCHHHHHHHTTCEEEEETTHHHHTT-TTTCSEECCCCSSHHHHHHHHHHHHHCSSCCSEEEEEEECHHHHH
T ss_pred cccCCC--CCCHHHHHHHCCCeEEEEcchHHeec-CCCccccccCCCCHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcc
Confidence 555542 24689999999998888865322111 23345556 778899999999999987 555 8999998654310
Q ss_pred hhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC
Q 008340 450 FKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGD 523 (569)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~gd 523 (569)
..+. ...+..-++++.+|++|.+|.++|.+++++||.+=||+
T Consensus 301 ~GH~--------------------------------~d~~~y~~aIe~vD~~LG~Il~aL~~~tllIITADHGn 342 (403)
T 2i09_A 301 YGHR--------------------------------RNAHGYRDCLHEFDERLPEIIAAMKVDDLLLITADHGN 342 (403)
T ss_dssp TTTT--------------------------------TCHHHHHHHHHHHHHHHHHHHHTCCTTEEEEEECSSBC
T ss_pred cCcC--------------------------------CCHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEecCCCC
Confidence 1110 01224567799999999999999999999999999998
No 32
>3ot9_A Phosphopentomutase; alkaline phosphatase like core domain, R phosphate, ribose-1-phosphate, glucose-1,6-bisphosphate, PH transfer, isomerase; HET: TPO G16; 1.75A {Bacillus cereus} PDB: 3m8y_A* 3m8w_A* 3m8z_A* 3twz_A* 3tx0_A 3uo0_A* 3un2_A 3un3_A* 3un5_A 3uny_A
Probab=96.00 E-value=0.027 Score=60.02 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=84.7
Q ss_pred CCCCCchhHHHHHHHHHhcCCeeeeeccccccccccCCCcceeecCChHHHHHHHHHhccCCCccEEEEeccccchhhhh
Q 008340 373 FGSPPSVMRTKLLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKK 452 (569)
Q Consensus 373 fg~~~~~~~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~i~~~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~ 452 (569)
|+..+. ...++++|.+.|.....|....... .+.+-+..++..+++++++++++.++....+|+++.+.+......+
T Consensus 220 ~~~~p~--~pTvld~L~~aG~~v~~VGKi~Dif-~g~Git~~~~~~~~~~~~d~~i~~L~~~~~dfv~vn~~~~D~~~GH 296 (399)
T 3ot9_A 220 YALKPF--GRTVMNELKDSDYDVIAIGKISDIY-DGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGH 296 (399)
T ss_dssp EECCCS--SCCHHHHHHHTTCEEEEETTHHHHT-TTTTCSEEECCSSHHHHHHHHHHHHTSCCSEEEEEEECHHHHHTTT
T ss_pred cCCCCC--CCCHHHHHHHcCCeEEEeccHHhee-cCCCccceeccCChHHHHHHHHHHHHhCCCCEEEEEecCCcccccc
Confidence 555442 2469999999999888886432111 1234456788899999999999999877779999998665321111
Q ss_pred hhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCC
Q 008340 453 QAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALPTNTMLIICTGHGD 523 (569)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~gd 523 (569)
. .......++++.+|++|.+|.++|..+.++||.|=||+
T Consensus 297 ~--------------------------------~~~~~Y~~aIe~vD~~IGrIL~~L~e~~lVIiTSDHG~ 335 (399)
T 3ot9_A 297 R--------------------------------RDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGN 335 (399)
T ss_dssp T--------------------------------TCHHHHHHHHHHHHTTHHHHHHHCCTTEEEEEECSSBC
T ss_pred c--------------------------------CCHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEcCCCC
Confidence 0 01124567799999999999999999999999999997
No 33
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=95.33 E-value=0.11 Score=60.19 Aligned_cols=146 Identities=14% Similarity=0.200 Sum_probs=88.6
Q ss_pred CCcEEEEEece-ecCCC--------CceEEEEEEEEeeCeEEEEEEEecCCCCCCC-cEeecCCChhhhcCCCCCHHHHH
Q 008340 211 PYEILALDCEM-CYTNE--------GLELTRVTLVDIKGQVLLDKLVKPSNAIVDY-NTRYSGITHEMLSGVTTSLKDIQ 280 (569)
Q Consensus 211 ~~~~vAiDcEm-~~t~~--------g~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy-~T~~SGIT~e~L~~~~~tl~dVq 280 (569)
+.+++++|+|+ ++... .+.|+.|++++.+|..-+ -+++|... ++ .+.+.| ..+... .+-.++.
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~-~~~~~~~~--~~~~~~i~~---~~v~~~-~~E~~LL 261 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKV-LVLNRNDV--NEGSVKLDG---ISVERF-NTEYELL 261 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEE-EEECSSCC--CCCCEEETT---EEEEEE-SSHHHHH
T ss_pred CceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEE-EEEeCCcc--cccccCCCC---CeEEEe-CCHHHHH
Confidence 45799999999 64311 157999999976664211 24454321 11 122222 223334 4778899
Q ss_pred HHHHHhhcCCCEEEEeCc-hhhHHHHccc---C-------CC--------------ccchhhhccc-------cCCCCCC
Q 008340 281 EEFLKLVYKETILVGHSL-ENDLLALKIS---H-------GL--------------VIDTAVLYKH-------PQGGSHK 328 (569)
Q Consensus 281 ~~l~~ll~~~tILVGHsL-~~DL~aLki~---h-------p~--------------viDT~~L~~~-------~~g~~~k 328 (569)
.++.+++..-.+|||||. .||+..|.-. | |. .+|....+.. ..+....
T Consensus 262 ~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~s 341 (847)
T 1s5j_A 262 GRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNE 341 (847)
T ss_dssp HHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSS
T ss_pred HHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccccccc
Confidence 999999976779999997 6899887521 1 11 2355444432 1122346
Q ss_pred chHHHHHHHhcCccccc--CC---C-----CCChHHHHHHHHHHH
Q 008340 329 TSLRVLAKKFLSREIQQ--SG---F-----GHDSTEDARAAMELA 363 (569)
Q Consensus 329 ~sLk~La~~~Lg~~Iq~--~~---~-----~HdS~EDA~Atl~L~ 363 (569)
++|..+|+.+||..-.. .. . ++-++.||..++.|+
T Consensus 342 ysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 342 YNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 88999999999975321 00 0 111467999999985
No 34
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.10 E-value=0.14 Score=58.87 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=79.1
Q ss_pred CCCCcEEEEEeceecCCCCceEEEEEEEEeeCeEEEEEEEecCC---CCCCCcEeecCCChhhhcCCCCCHHHHHHHHHH
Q 008340 209 SSPYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSN---AIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLK 285 (569)
Q Consensus 209 ~~~~~~vAiDcEm~~t~~g~eL~rVsvVd~~G~vv~D~lVkP~~---~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ 285 (569)
..+.+++++|+|+.. .| +|..|++-+..-..++ .+.+.. ++.+. .+... .+-.++..++.+
T Consensus 150 ~p~lrilsfDIE~~~--~g-~i~~I~~~~~~~~~v~--~l~~~~~~~~~~~~----------~V~~f-~~E~~lL~~f~~ 213 (786)
T 3k59_A 150 RPPLKWVSIDIETTR--HG-ELYCIGLEGCGQRIVY--MLGPENGDASSLDF----------ELEYV-ASRPQLLEKLNA 213 (786)
T ss_dssp CCCCCEEEEEEEECT--TS-CEEEEEEEETTEEEEE--EESSCCSCCTTCSS----------EEEEE-SSHHHHHHHHHH
T ss_pred CCCCeEEEEEEEEcC--CC-CEEEEEecCCCCCeEE--EEecCCCCCCCCCc----------eEEEe-CCHHHHHHHHHH
Confidence 456789999999983 44 6777776543212221 122211 22222 12222 244556666666
Q ss_pred hhcCC--CEEEEeCc-hhhHHHHcc-------cC--------------------------CC-ccchhhhccccCCCCCC
Q 008340 286 LVYKE--TILVGHSL-ENDLLALKI-------SH--------------------------GL-VIDTAVLYKHPQGGSHK 328 (569)
Q Consensus 286 ll~~~--tILVGHsL-~~DL~aLki-------~h--------------------------p~-viDT~~L~~~~~g~~~k 328 (569)
++..- .||||||. .||+..|.- .. .+ ++|...+.+........
T Consensus 214 ~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~S 293 (786)
T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786)
T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC
T ss_pred HHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCC
Confidence 66322 49999997 579988741 00 01 34554444321112357
Q ss_pred chHHHHHHHhcCcccccCCCCCC----------------------hHHHHHHHHHHHHH
Q 008340 329 TSLRVLAKKFLSREIQQSGFGHD----------------------STEDARAAMELALL 365 (569)
Q Consensus 329 ~sLk~La~~~Lg~~Iq~~~~~Hd----------------------S~EDA~Atl~L~~~ 365 (569)
++|..+|+++||..-. .|+ ++.||..+++|+.+
T Consensus 294 ysL~~Va~~~Lg~~K~----~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~k 348 (786)
T 3k59_A 294 FSLETVAQELLGEGKS----IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHK 348 (786)
T ss_dssp CSHHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCc----ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999996522 233 26899999999865
No 35
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.049 Score=63.68 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=85.0
Q ss_pred CCCcEEEEEeceecCC---C---CceEEEEEEE-EeeCeE--EEEE-E-EecCCCCCCCcEeecCCChhhhcCCCCCHHH
Q 008340 210 SPYEILALDCEMCYTN---E---GLELTRVTLV-DIKGQV--LLDK-L-VKPSNAIVDYNTRYSGITHEMLSGVTTSLKD 278 (569)
Q Consensus 210 ~~~~~vAiDcEm~~t~---~---g~eL~rVsvV-d~~G~v--v~D~-l-VkP~~~I~dy~T~~SGIT~e~L~~~~~tl~d 278 (569)
.+.+++++|+|+.... + .++|+.||.+ ..+|.. .... + +.+..+ +....+... .+-.+
T Consensus 247 PplrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~----------~~~~~V~~~-~sE~e 315 (919)
T 3iay_A 247 APLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSP----------ITGSMIFSH-ATEEE 315 (919)
T ss_dssp CCCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCC----------BTTBEEEEE-SSHHH
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCC----------CCCCeEEEC-CCHHH
Confidence 4568999999998532 1 2689999865 445531 1111 1 122211 112233444 36677
Q ss_pred HHHHHHHhhc--CCCEEEEeCc-hhhHHHHc-------ccCC------------------------------------Cc
Q 008340 279 IQEEFLKLVY--KETILVGHSL-ENDLLALK-------ISHG------------------------------------LV 312 (569)
Q Consensus 279 Vq~~l~~ll~--~~tILVGHsL-~~DL~aLk-------i~hp------------------------------------~v 312 (569)
+...+.+++. .-.||||||. .|||..|. +.+. .+
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 8888887773 2479999998 68998874 1110 13
Q ss_pred cchhhhccccCCCCCCchHHHHHHHhcCccccc-CC--------CC--------CChHHHHHHHHHHHHHH
Q 008340 313 IDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQ-SG--------FG--------HDSTEDARAAMELALLK 366 (569)
Q Consensus 313 iDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~-~~--------~~--------HdS~EDA~Atl~L~~~k 366 (569)
+|+..+.+.. .....++|..+|+++||..-.. .. ++ +-++.||..+++|+.+.
T Consensus 396 lDl~~~~k~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh-cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555444432 2345788999999999965432 00 00 11368999999998653
No 36
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=94.77 E-value=0.13 Score=60.10 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=96.9
Q ss_pred CcEEEEEeceecCC-------CCceEEEEEEEEeeCe--EEEEEEEecCCCCCCCcEe---------ecCCChhhhcCCC
Q 008340 212 YEILALDCEMCYTN-------EGLELTRVTLVDIKGQ--VLLDKLVKPSNAIVDYNTR---------YSGITHEMLSGVT 273 (569)
Q Consensus 212 ~~~vAiDcEm~~t~-------~g~eL~rVsvVd~~G~--vv~D~lVkP~~~I~dy~T~---------~SGIT~e~L~~~~ 273 (569)
-++++||+|+..-+ ...+|+-|++.|..+. ++|+-|--|......|.+. ...+..+.+.++.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 187 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKII 187 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEE
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeE
Confidence 46999999996521 1258999999997554 4455555555555555432 2335555555542
Q ss_pred ----CCHHHHHHHHHHhhc--CCCEEEEeCc-hhhHHHHc--------cc----------------------------CC
Q 008340 274 ----TSLKDIQEEFLKLVY--KETILVGHSL-ENDLLALK--------IS----------------------------HG 310 (569)
Q Consensus 274 ----~tl~dVq~~l~~ll~--~~tILVGHsL-~~DL~aLk--------i~----------------------------hp 310 (569)
.+-.++..++.+++. .-.||+|||. .|||..|. +. +.
T Consensus 188 v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~G 267 (903)
T 3qex_A 188 YMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFG 267 (903)
T ss_dssp EEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETT
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeC
Confidence 356678888888774 3479999997 67986652 10 01
Q ss_pred C-ccchhhhcccc-CCCCCCchHHHHHHHhcCcccccCCCCCC----------------hHHHHHHHHHHHHH
Q 008340 311 L-VIDTAVLYKHP-QGGSHKTSLRVLAKKFLSREIQQSGFGHD----------------STEDARAAMELALL 365 (569)
Q Consensus 311 ~-viDT~~L~~~~-~g~~~k~sLk~La~~~Lg~~Iq~~~~~Hd----------------S~EDA~Atl~L~~~ 365 (569)
+ ++|+..+++.. ......++|..+|+++||..... -|. ++.||..+++|+.+
T Consensus 268 Rv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d---~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 268 ISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLK---YDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp CEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCC---CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccc---cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 46766666531 12334788999999999986432 111 25799999999864
No 37
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=93.02 E-value=0.49 Score=48.12 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=87.8
Q ss_pred cEEEEEeceecCCCC----------------------ceEEEEE--EEEeeCeE-----E--EEEEEecCCCCCC-----
Q 008340 213 EILALDCEMCYTNEG----------------------LELTRVT--LVDIKGQV-----L--LDKLVKPSNAIVD----- 256 (569)
Q Consensus 213 ~~vAiDcEm~~t~~g----------------------~eL~rVs--vVd~~G~v-----v--~D~lVkP~~~I~d----- 256 (569)
.+||||+|+.|.... ..|+++. +.+.+|+. . |+-...|...+..
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~SI~ 114 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIE 114 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHHH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccccHHHHH
Confidence 499999999997321 1255554 44555542 1 3334444432211
Q ss_pred CcEeecCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHc-c-------------------cCCCcc
Q 008340 257 YNTRYSGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALK-I-------------------SHGLVI 313 (569)
Q Consensus 257 y~T~~SGIT~e~L~~~~~tl~dVq~~l~~---ll~~~tILVGHsL~~DL~aLk-i-------------------~hp~vi 313 (569)
++ +=+||.=..+...+.+..+..+.+.. ++.++...|.|+--.|+..|- + .-|.+.
T Consensus 115 fL-~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vY 193 (285)
T 4gmj_B 115 LL-TTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIY 193 (285)
T ss_dssp HH-HHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEE
T ss_pred HH-HHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhh
Confidence 11 22666655554332344433333322 233454555555458986543 1 136788
Q ss_pred chhhhccccCCCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHH
Q 008340 314 DTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIR 368 (569)
Q Consensus 314 DT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~ 368 (569)
||-.|.+...+ .+.+|..||+. ||+.= -+..|.|-.||..|+..|.+..+
T Consensus 194 D~K~l~~~~~~--l~ggL~~lA~~-L~v~r--~g~~HqAGsDSllT~~~F~kl~~ 243 (285)
T 4gmj_B 194 DVKYLMKSCKN--LKGGLQEVAEQ-LELER--IGPQHQAGSDSLLTGMAFFKMRE 243 (285)
T ss_dssp EHHHHGGGSTT--CCSCHHHHHHH-TTCCC--CSCTTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccc--cCChHHHHHHh-CCCCC--CCCCCcchhHHHHHHHHHHHHHH
Confidence 99888876643 46689999986 67652 23579999999999999976543
No 38
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=92.28 E-value=0.42 Score=51.16 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=66.6
Q ss_pred hhhcCCCCCHHHHHHHHHHhhcCCCEEEEeCchhhHHHHcc-------------------cCCCccchhhhccccC--CC
Q 008340 267 EMLSGVTTSLKDIQEEFLKLVYKETILVGHSLENDLLALKI-------------------SHGLVIDTAVLYKHPQ--GG 325 (569)
Q Consensus 267 e~L~~~~~tl~dVq~~l~~ll~~~tILVGHsL~~DL~aLki-------------------~hp~viDT~~L~~~~~--g~ 325 (569)
+.+..+ ..|..|.+.|.+ .+.+|||||.-.||-.|-- .-|.|+||-.|+.+.. ..
T Consensus 262 ~~l~~~-~Gfr~V~~~L~~---s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~ 337 (430)
T 2a1r_A 262 EELNDA-VGFSRVIHAIAN---SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDI 337 (430)
T ss_dssp HHHHTT-SBTHHHHHHHHH---HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTT
T ss_pred HHHHhh-hhHHHHHHHHHh---CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhc
Confidence 345555 577777776655 6899999999999975431 1378999988875531 11
Q ss_pred CCCchHHHHHHHhcCcc-----ccc----------CCCCCChHHHHHHHHHHHHHHHHc
Q 008340 326 SHKTSLRVLAKKFLSRE-----IQQ----------SGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 326 ~~k~sLk~La~~~Lg~~-----Iq~----------~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
....+|..|...+.... |+. .+..|.|--||..|..+|......
T Consensus 338 ~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 338 INNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp CSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 23467999987542221 211 134599999999999999766543
No 39
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=91.09 E-value=1.5 Score=52.81 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=83.8
Q ss_pred CCCcEEEEEeceecCC-----------CCceEEEEEEE-EeeCe-EEEEEEEec-CC--CCCCCcE--eecCCChhhhcC
Q 008340 210 SPYEILALDCEMCYTN-----------EGLELTRVTLV-DIKGQ-VLLDKLVKP-SN--AIVDYNT--RYSGITHEMLSG 271 (569)
Q Consensus 210 ~~~~~vAiDcEm~~t~-----------~g~eL~rVsvV-d~~G~-vv~D~lVkP-~~--~I~dy~T--~~SGIT~e~L~~ 271 (569)
.+.+++++|+|+...+ ..++|+.||.+ ...|. .....+|-+ .. .+.++.. +-.|+....+..
T Consensus 318 P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 318 PAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp CCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred CCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 4568999999998642 13689999964 32221 112222221 11 1111110 000110001223
Q ss_pred CCCCHHHHHHHHHHhhcC--CCEEEEeCc-hhhHHHHccc----C----C------------------------------
Q 008340 272 VTTSLKDIQEEFLKLVYK--ETILVGHSL-ENDLLALKIS----H----G------------------------------ 310 (569)
Q Consensus 272 ~~~tl~dVq~~l~~ll~~--~tILVGHsL-~~DL~aLki~----h----p------------------------------ 310 (569)
. .+-.++...+.++|.. -.||||||+ .|||..|.-. | +
T Consensus 398 ~-~sE~eLL~~F~~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~ 476 (1193)
T 2gv9_A 398 F-DSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVN 476 (1193)
T ss_dssp E-SSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEET
T ss_pred c-CCHHHHHHHHHHHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccceEEEc
Confidence 3 3556777777777743 259999997 6799766411 1 0
Q ss_pred --CccchhhhccccCCCCCCchHHHHHHHhcCcccccCC----------C-------CCChHHHHHHHHHHHHHH
Q 008340 311 --LVIDTAVLYKHPQGGSHKTSLRVLAKKFLSREIQQSG----------F-------GHDSTEDARAAMELALLK 366 (569)
Q Consensus 311 --~viDT~~L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~----------~-------~HdS~EDA~Atl~L~~~k 366 (569)
.++|+..+.... .....++|..+|+++||..-..-. + ++-++.||..++.|+.+.
T Consensus 477 GRv~lDl~~~~~~~-~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 477 GMVNIDMYGIITDK-IKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp TBEEEEHHHHHTTT-CCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEeehHHHHHHHH-hccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 134555444332 234578899999999997533200 0 122357899999888654
No 40
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.04 E-value=0.24 Score=54.08 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHhhcCCCEEEEeCchhhHHHHcc-------------------cCCCccchhhhccccC--CCCCCchHH
Q 008340 274 TSLKDIQEEFLKLVYKETILVGHSLENDLLALKI-------------------SHGLVIDTAVLYKHPQ--GGSHKTSLR 332 (569)
Q Consensus 274 ~tl~dVq~~l~~ll~~~tILVGHsL~~DL~aLki-------------------~hp~viDT~~L~~~~~--g~~~k~sLk 332 (569)
..|..|.+.|. ..+.+|||||.-.||-.|-- .-|.|+||-.|..+.. ......+|.
T Consensus 263 ~Gfr~v~~~L~---~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~ 339 (507)
T 3d45_A 263 VGFSRVIHAIA---NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLA 339 (507)
T ss_dssp SBTHHHHHHHH---HHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHH
T ss_pred hhHHHHHHHHH---hCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHH
Confidence 35666665554 47899999999999977641 1378999998876521 112356899
Q ss_pred HHHHHhcCc------cccc----------CCCCCChHHHHHHHHHHHHHHHHc
Q 008340 333 VLAKKFLSR------EIQQ----------SGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 333 ~La~~~Lg~------~Iq~----------~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
.|++. |+. +|+. .+..|.|--||..|..+|.+....
T Consensus 340 ~l~~~-l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~ 391 (507)
T 3d45_A 340 ELEKR-LKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 391 (507)
T ss_dssp HHHHH-TTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 99986 442 1211 124699999999999999776554
No 41
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* 3nvl_A
Probab=73.90 E-value=3.4 Score=45.69 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=58.1
Q ss_pred ecCChHHHHHHHHHhccCCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHH
Q 008340 416 PVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEIL 495 (569)
Q Consensus 416 ~~~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (569)
+-.|-.|+.+++++.++....||+++.|-.... + + .. ...+...+++
T Consensus 394 Pemsa~ev~d~~i~al~~~~~DfI~vn~an~Dm-----------v-G-----------Ht----------Gd~~a~~kAI 440 (561)
T 3igz_B 394 PRMQSAAITEAAIEALKSGMYNVVRINFPNGDM-----------V-G-----------HT----------GDLKATITGV 440 (561)
T ss_dssp TTTTHHHHHHHHHHHHHHSCCSEEEEEECHHHH-----------H-H-----------TT----------TCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEEecCChhh-----------h-h-----------cC----------CCHHHHHHHH
Confidence 445678999999999987778999998843210 0 0 00 0123456789
Q ss_pred HHHHHHHHHHHhhCCC-CcEEEEEeCCCChHHH
Q 008340 496 ARTDARVNSLYTALPT-NTMLIICTGHGDTAIV 527 (569)
Q Consensus 496 ~~~~~~i~~iy~~lP~-~t~liv~sg~gd~~~m 527 (569)
+.+|+.|.+|+++|-. +|++||.|=||++..|
T Consensus 441 E~vD~~LGrIl~aL~e~GtiIIITADHGn~e~m 473 (561)
T 3igz_B 441 EAVDESLAKLKDAVDSVNGVYIVTADHGNSDDM 473 (561)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSSBSTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCCCchhc
Confidence 9999999999999965 7999999999997533
No 42
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=73.33 E-value=3.6 Score=45.48 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=40.5
Q ss_pred CCcEEEEEeceecCCCCceEEEEEEEEeeCeEEEEEEEecCCCCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCC
Q 008340 211 PYEILALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSNAIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKE 290 (569)
Q Consensus 211 ~~~~vAiDcEm~~t~~g~eL~rVsvVd~~G~vv~D~lVkP~~~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~ 290 (569)
+++++++|+||........+..+++.+..+. . .|.|. ..+.+..+.+. ..+
T Consensus 5 ~~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~-------------~----~~~~~---------~~l~~fi~~~~---~~~ 55 (575)
T 2py5_A 5 PRKMYSCAFETTTKVEDCRVWAYGYMNIEDH-------------S----EYKIG---------NSLDEFMAWVL---KVQ 55 (575)
T ss_dssp CCCEEEEEEEECCBTTBCCEEEEEEEESSCT-------------T----CEEEE---------SCHHHHHHHHH---HHC
T ss_pred cceEEEEEEEeecCCCCCceEEEEEEeCCce-------------E----EEEec---------hhHHHHHHHHH---HcC
Confidence 3569999999965444446777777653211 1 11110 12444444433 345
Q ss_pred CEEEEeCchhhHHHHc
Q 008340 291 TILVGHSLENDLLALK 306 (569)
Q Consensus 291 tILVGHsL~~DL~aLk 306 (569)
.++++||+.||+.+|-
T Consensus 56 ~~i~~hNl~FD~~~l~ 71 (575)
T 2py5_A 56 ADLYFHNLKFAGAFII 71 (575)
T ss_dssp CEEEETTHHHHHHHHH
T ss_pred CEEEEEChhhhHHHHH
Confidence 7799999999998875
No 43
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Probab=71.40 E-value=5.5 Score=44.09 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhccCC------CccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHH
Q 008340 420 DDEVLSKARKEVKND------RIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKE 493 (569)
Q Consensus 420 D~ev~~~~~~~v~~~------~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (569)
|+.+.+.|+..+... ..||+++.|.++. +..+. . .....+..+
T Consensus 267 D~~v~~~A~~~l~~~~l~~~~~pdll~vy~~~~D-~~gH~------~------------------------Gp~S~e~~~ 315 (565)
T 3q3q_A 267 DAMTLAFAAAAIENMQLGKQAQTDIISIGLSATD-YVGHT------F------------------------GTEGTESCI 315 (565)
T ss_dssp HHHHHHHHHHHHHHTTTTSSSSCEEEEEEECHHH-HHHHH------H------------------------CSSSHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCCCEEEEEcCCCc-ccccc------C------------------------CCCCHHHHH
Confidence 788888777665443 4799999998764 22110 0 012346888
Q ss_pred HHHHHHHHHHHHHhhCC---CCcEEEEEeCCCCh
Q 008340 494 ILARTDARVNSLYTALP---TNTMLIICTGHGDT 524 (569)
Q Consensus 494 ~~~~~~~~i~~iy~~lP---~~t~liv~sg~gd~ 524 (569)
++.++|+.|.+|++.|. .++++||.|-||=.
T Consensus 316 ~l~~lD~~lg~Ll~~l~~~~~~t~vivtSDHG~~ 349 (565)
T 3q3q_A 316 QVDRLDTELGAFFDKLDKDGIDYVVVLTADHGGH 349 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCCCC
Confidence 99999999999999884 69999999998854
No 44
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=68.84 E-value=6.2 Score=43.21 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHhccCCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHH
Q 008340 418 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILAR 497 (569)
Q Consensus 418 ~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (569)
.+++++.+++++.+.....+|++..|..... .. .. ........+++.
T Consensus 374 ms~~ev~d~ai~~L~~~kpdfi~lnf~~pD~-~G----------------------H~----------~~~~~y~~aIe~ 420 (511)
T 1o98_A 374 MSAYEVTDALLKEIEADKYDAIILNYANPDM-VG----------------------HS----------GKLEPTIKAVEA 420 (511)
T ss_dssp TTHHHHHHHHHHHHHTTCCSEEEEEECHHHH-HH----------------------TT----------TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCCcEEEEeCCCCcc-cc----------------------cc----------cCHHHHHHHHHH
Confidence 5678999999998877667999988754321 00 00 011245677999
Q ss_pred HHHHHHHHHhhCCC-CcEEEEEeCCCCh
Q 008340 498 TDARVNSLYTALPT-NTMLIICTGHGDT 524 (569)
Q Consensus 498 ~~~~i~~iy~~lP~-~t~liv~sg~gd~ 524 (569)
+|+.|.+|+++|.. +|++|+.|-||.+
T Consensus 421 vD~~lGrll~~Lk~~gTlIIiTSDHG~~ 448 (511)
T 1o98_A 421 VDECLGKVVDAILAKGGIAIITADHGNA 448 (511)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSBST
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 99999999999975 7999999999975
No 45
>3m7v_A Phosphopentomutase; structural genomics, nysgrc, cytoplasm, isomerase, manganese binding, PSI-2, protein structure initiative; 2.00A {Streptococcus mutans}
Probab=63.97 E-value=5.9 Score=39.62 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCh
Q 008340 491 IKEILARTDARVNSLYTALPTNTMLIICTGHGDT 524 (569)
Q Consensus 491 ~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~gd~ 524 (569)
.-+.++.+|+.|.+|.++|..||++|+.|=||+.
T Consensus 312 y~~~i~~~D~~vg~~l~~L~entliiftsDnG~~ 345 (413)
T 3m7v_A 312 YRDCLHEFDERLPEIIAAMKVDDLLLITADHGND 345 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTEEEEEECSSBCC
T ss_pred HHHHHHHHHhHHHHHHHhcCCCCEEEEEccCCCC
Confidence 4567999999999999999999999999999964
No 46
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase; phosphonopyruvate decarboxylase, isomerase, structural genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Probab=63.71 E-value=13 Score=39.47 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=52.6
Q ss_pred CChHHHHHHHHHhccCCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHH
Q 008340 418 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILAR 497 (569)
Q Consensus 418 ~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (569)
.+.++.++.+++.+. ..||+++.|..... ..+. ...+...++++.
T Consensus 278 ~~~~~~~~~~~~~l~--~~d~v~v~~~~~D~-~GH~--------------------------------~d~~~~~~aie~ 322 (412)
T 2zkt_A 278 TNEMAKAKKAVELLK--DYDFVFLHFKPTDA-AGHD--------------------------------NKPKLKAELIER 322 (412)
T ss_dssp CCHHHHHHHHHHHHH--HCSEEEEEECHHHH-HHHT--------------------------------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEcCccCCh-HHHc--------------------------------CCHHHHHHHHHH
Confidence 466777777777776 35899988855421 1100 012346678999
Q ss_pred HHHHHHHHHhhCCC-CcEEEEEeCCCCh
Q 008340 498 TDARVNSLYTALPT-NTMLIICTGHGDT 524 (569)
Q Consensus 498 ~~~~i~~iy~~lP~-~t~liv~sg~gd~ 524 (569)
+|++|.+|+++|.. ++.+||.+-||+|
T Consensus 323 ~D~~lg~ll~al~~~~~~liitaDHG~p 350 (412)
T 2zkt_A 323 ADRMIGYILDHVDLEEVVIAITGDHSTP 350 (412)
T ss_dssp HHHHHHHHHTTSCTTTEEEEEECSSBCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 99999999999987 7899999999997
No 47
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=62.74 E-value=11 Score=38.42 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHhcc---CCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHH
Q 008340 419 SDDEVLSKARKEVK---NDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEIL 495 (569)
Q Consensus 419 ~D~ev~~~~~~~v~---~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (569)
++++.++++++.+. ....+|++..|..... .. + .. .....+...++
T Consensus 140 ~~~~~~~~a~~~l~~~~~~~P~fl~~~~~~~d~--~~----h-~~------------------------g~~~~~y~~~i 188 (393)
T 2gso_A 140 RLDTRVDAVRGWLATDGAQRNRLVTLYFEHVDE--AG----H-DH------------------------GPESRQYADAV 188 (393)
T ss_dssp CHHHHHHHHHHHHHCCGGGCEEEEEEEECHHHH--HH----H-HH------------------------CTTSHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCCCeEEEEecCCCCc--cc----c-cc------------------------CCCcHHHHHHH
Confidence 35667777776664 2356899888765421 00 0 00 01123577889
Q ss_pred HHHHHHHHHHHhhCC-----CCcEEEEEeCCCCh
Q 008340 496 ARTDARVNSLYTALP-----TNTMLIICTGHGDT 524 (569)
Q Consensus 496 ~~~~~~i~~iy~~lP-----~~t~liv~sg~gd~ 524 (569)
+.+|+.|.+|.++|. .||++|+.|=||-.
T Consensus 189 ~~~D~~ig~ll~~L~~~g~~~nT~vi~tSDHG~~ 222 (393)
T 2gso_A 189 RAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMA 222 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEEEECSCCCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCCC
Confidence 999999999999988 78999999999974
No 48
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas fluorescens} SCOP: c.76.1.4
Probab=62.38 E-value=19 Score=37.03 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHhccCCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHHH
Q 008340 419 SDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILART 498 (569)
Q Consensus 419 ~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (569)
.|+.+.+.+++.++....+|++ |.++. +..+ . . .....+..++++.+
T Consensus 175 ~~~~~~~~a~~~i~~~~p~fly--~~~~D-~~gH----------~-------------~-------g~~s~~~~~~l~~l 221 (406)
T 1ei6_A 175 LSEFVFAAGLSLLTNERPDFMY--LSTTD-YVQH----------K-------------H-------APGTPEANAFYAMM 221 (406)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEE--EECCC-HHHH----------H-------------S-------CTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEE--eCCcc-hhhc----------c-------------C-------CCCcHHHHHHHHHH
Confidence 3677788888777766778853 54442 1110 0 0 01224678899999
Q ss_pred HHHHHHHHhhCCCCcEEEEEeCCCC
Q 008340 499 DARVNSLYTALPTNTMLIICTGHGD 523 (569)
Q Consensus 499 ~~~i~~iy~~lP~~t~liv~sg~gd 523 (569)
|+.|.+|.++ +|++||.|=||-
T Consensus 222 D~~lg~ll~~---~t~vivtSDHG~ 243 (406)
T 1ei6_A 222 DSYFKRYHEQ---GAIVAITADHGM 243 (406)
T ss_dssp HHHHHHHHHT---TCEEEEECSCCC
T ss_pred HHHHHHHHhC---CCEEEEEeCCCC
Confidence 9999999999 999999998886
No 49
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=57.22 E-value=40 Score=33.46 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=67.2
Q ss_pred cCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHc-c-------------------cCCCccchhhh
Q 008340 262 SGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALK-I-------------------SHGLVIDTAVL 318 (569)
Q Consensus 262 SGIT~e~L~~~~~tl~dVq~~l~~---ll~~~tILVGHsL~~DL~aLk-i-------------------~hp~viDT~~L 318 (569)
+||.=+.+...+.+..+..+.+.. +++.+-..|.|+-..|+..|= + .-|.+.||-.+
T Consensus 109 ~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l 188 (252)
T 2d5r_A 109 SGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYL 188 (252)
T ss_dssp HTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHH
T ss_pred cCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHH
Confidence 455544444333344444444433 233455778888888886542 2 13578899888
Q ss_pred ccccCCCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHc
Q 008340 319 YKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 319 ~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
.+...+ .+.+|..||+. ||.+= -+..|.|-.||.-|...|.+..+.
T Consensus 189 ~~~~~~--l~~gL~~la~~-L~v~r--~g~~HqAGsDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 189 MKSCKN--LKGGLQEVAEQ-LELER--IGPQHQAGSDSLLTGMAFFKMREM 234 (252)
T ss_dssp GGGCTT--CCSSHHHHHHH-HTCCC--CSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcc--cCCCHHHHHHH-cCCCc--cCcccchhhhHHHHHHHHHHHHHH
Confidence 877643 35789999986 57542 246799999999999999766544
No 50
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*
Probab=55.85 E-value=25 Score=40.64 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHhcCCeeeeeccccccccccCCCcceeecCChHHHHHHHHHhcc---CCCccEEEEeccccchhhhhhhHhHHHH
Q 008340 384 LLKVLFEYGKTSTLIDNVSIIKRYASESSHAIPVSSDDEVLSKARKEVK---NDRIHFVWTQFSELNLHFKKQAKDEAKL 460 (569)
Q Consensus 384 l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~i~~~~D~ev~~~~~~~v~---~~~~~f~~~~~~~l~~~~~~~~~~~~~~ 460 (569)
+...+.+.|.++..+.|. + -..-++.+..+++.+. ....+|+++.|.++.. ..+. .
T Consensus 224 iw~~~~~~G~~ta~~~wp------g--------~~~~~~~v~~~~~~l~~~~~~~P~f~~ly~~~~D~-~gH~------~ 282 (831)
T 3nkq_A 224 LWITATKQGVRAGTFFWS------V--------SIPHERRILTILQWLSLPDNERPSVYAFYSEQPDF-SGHK------Y 282 (831)
T ss_dssp HHHHHHHTTCCBCCSCCC------T--------TSCHHHHHHHHHHHHTSCTTTCCSEEEEEEEEEHH-HHHH------H
T ss_pred HHHHHHHcCCceEEEeCC------C--------CCCHHHHHHHHHHHHhcccccCCceEEEecCCcch-hccc------c
Confidence 455666777776655442 1 0123556666666553 3457899988877642 1100 0
Q ss_pred HHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEeCCC
Q 008340 461 NEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILARTDARVNSLYTALP-----TNTMLIICTGHG 522 (569)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iy~~lP-----~~t~liv~sg~g 522 (569)
.....+..++++.+|..|.+|.++|. .||++||.|=||
T Consensus 283 ------------------------Gp~s~ey~~al~~vD~~IG~Ll~~Lk~~GL~dnT~VI~TSDHG 325 (831)
T 3nkq_A 283 ------------------------GPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHG 325 (831)
T ss_dssp ------------------------CTTCGGGHHHHHHHHHHHHHHHHHHHHTTCTTTCEEEEEESCC
T ss_pred ------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEcCCC
Confidence 01122467789999999999999875 579999999999
No 51
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; structural genomics, PSI-2, protein genomics, MCSG, glycolysis isomerase; 2.60A {Thermoplasma acidophilum} PDB: 3idd_A
Probab=49.36 E-value=23 Score=37.51 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHhccCCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHHHHH
Q 008340 418 SSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEILAR 497 (569)
Q Consensus 418 ~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (569)
++=++-++++++.++. +||++++|-.... ..+ . ...+...++++.
T Consensus 275 t~~~~k~~~~i~~l~~--~d~v~~n~~~~D~-~GH----------------------~----------gd~~~~~~aie~ 319 (399)
T 3kd8_A 275 SNYRGKIEKAVDLTSS--HDFVLVNIKATDV-AGH----------------------D----------GNYPLKRDVIED 319 (399)
T ss_dssp CCHHHHHHHHHHHTTT--CSEEEEEEECC---------------------------------------CCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhh--CCEEEEEecCcch-hhh----------------------c----------cCHHHHHHHHHH
Confidence 3335556778888875 6899999865431 110 0 112245678999
Q ss_pred HHHHHHHHHhhCCCCcEEEEEeCCCChH
Q 008340 498 TDARVNSLYTALPTNTMLIICTGHGDTA 525 (569)
Q Consensus 498 ~~~~i~~iy~~lP~~t~liv~sg~gd~~ 525 (569)
+|++|.+|++ |.+++++||.+=||+|-
T Consensus 320 ~D~~l~~i~~-l~~~~~liITaDHg~p~ 346 (399)
T 3kd8_A 320 IDRAMEPLKS-IGDHAVICVTGDHSTPC 346 (399)
T ss_dssp HHHTTGGGGS-CTTTEEEEEEEC-----
T ss_pred HHHHHHHHHc-cCCCCEEEEECCCCCCC
Confidence 9999999999 99899999999999973
No 52
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A {Sinorhizobium meliloti} SCOP: c.76.1.0 PDB: 3szz_A 3t00_A 3t01_A 3t02_A
Probab=45.56 E-value=44 Score=35.32 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEeCCC
Q 008340 488 TPEIKEILARTDARVNSLYTALPTNTMLIICTGHG 522 (569)
Q Consensus 488 ~~~~~~~~~~~~~~i~~iy~~lP~~t~liv~sg~g 522 (569)
+++..++++++|+.|.+|+++ ++.+||.|=||
T Consensus 224 s~~~~~~~~~~D~~l~~l~~~---~~~vivtsDHG 255 (427)
T 3szy_A 224 VPEANSFYEMFDRYLAELDGL---GAAIVVTADHG 255 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT---TCEEEEECSCC
T ss_pred cHHHHHHHHHHHHHHHHHHhC---CCEEEEEcCCC
Confidence 346889999999999999998 89999999998
No 53
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=44.98 E-value=34 Score=35.44 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=65.6
Q ss_pred cCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHc-c-------------------cCCCccchhhh
Q 008340 262 SGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALK-I-------------------SHGLVIDTAVL 318 (569)
Q Consensus 262 SGIT~e~L~~~~~tl~dVq~~l~~---ll~~~tILVGHsL~~DL~aLk-i-------------------~hp~viDT~~L 318 (569)
+||.=+.+...+....+..+.|.. +++.+-..|.+.-..|+..|= + .-|.+.||-.|
T Consensus 130 ~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l 209 (333)
T 2p51_A 130 SGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYI 209 (333)
T ss_dssp TTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHH
T ss_pred cCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHH
Confidence 466655554333455544444442 233445667777788876532 2 13678899888
Q ss_pred ccccCCCCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHH
Q 008340 319 YKHPQGGSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKI 367 (569)
Q Consensus 319 ~~~~~g~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl 367 (569)
.+...+ .+.+|..||+. ||.+ .-+..|.|-.||..|+..|.+..
T Consensus 210 ~~~~~~--l~ggL~~lA~~-L~v~--Rig~~HqAGsDSlLT~~~F~kl~ 253 (333)
T 2p51_A 210 MKSVLN--NSKGLQDIADD-LQIH--RIGPQHQAGSDALLTARIFFEIR 253 (333)
T ss_dssp HTTTTC--CCCCHHHHHHH-TTCC--CCSCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHhcc--ccCCHHHHHHH-cCCC--ccCcchhhhhHHHHHHHHHHHHH
Confidence 776643 45689999985 6754 22468999999999999996543
No 54
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB, sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio parahaemolyticus}
Probab=42.60 E-value=1.1e+02 Score=31.67 Aligned_cols=34 Identities=12% Similarity=0.312 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEeCCCC
Q 008340 490 EIKEILARTDARVNSLYTALP-----TNTMLIICTGHGD 523 (569)
Q Consensus 490 ~~~~~~~~~~~~i~~iy~~lP-----~~t~liv~sg~gd 523 (569)
....++..+|..|.+|.+.|- .||++|++|=||.
T Consensus 270 ~y~~~v~~~D~~ig~~l~~L~~~g~~~nTlvI~tsDHG~ 308 (450)
T 3lxq_A 270 TRNNAVKYSDYALGTFFDKAKKSSYWDDTIFIVIADHDA 308 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSSGGGEEEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcCCeEEEEECCCCc
Confidence 356789999999999999984 6999999999995
No 55
>4gtw_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2, alkaline phosphodiesterase...; bone mineralization, hydrolase; HET: NAG BMA MAN AMP; 2.70A {Mus musculus} PDB: 4gtx_A* 4gty_A* 4gtz_A* 4b56_A*
Probab=33.32 E-value=2.9e+02 Score=31.55 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-----CCCcEEEEEeCCCC
Q 008340 489 PEIKEILARTDARVNSLYTAL-----PTNTMLIICTGHGD 523 (569)
Q Consensus 489 ~~~~~~~~~~~~~i~~iy~~l-----P~~t~liv~sg~gd 523 (569)
.+..+++..+|+.|.+|.++| ..||++|+.|=||=
T Consensus 287 ~e~~~~i~~vD~~IG~ll~~L~~~gl~dnT~VI~tSDHGm 326 (823)
T 4gtw_A 287 SEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHGM 326 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCCC
Confidence 457788999999999999875 67999999999993
No 56
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=30.54 E-value=47 Score=33.64 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=63.0
Q ss_pred cCCChhhhcCCCCCHHHHHHHHHH---hhcCCCEEEEeCchhhHHHHc-c-------------------cCCCccchhhh
Q 008340 262 SGITHEMLSGVTTSLKDIQEEFLK---LVYKETILVGHSLENDLLALK-I-------------------SHGLVIDTAVL 318 (569)
Q Consensus 262 SGIT~e~L~~~~~tl~dVq~~l~~---ll~~~tILVGHsL~~DL~aLk-i-------------------~hp~viDT~~L 318 (569)
+||.=+.....+.+..+..+.+.. +++.+-..|.++--.|+..|= + .-|.+.||-.+
T Consensus 124 ~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l 203 (289)
T 1uoc_A 124 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLV 203 (289)
T ss_dssp TTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHH
T ss_pred cCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHH
Confidence 455544443322344433333332 223455677777788886532 2 12678898876
Q ss_pred ccccC---C----------CCCCchHHHHHHHhcCcccccCCCCCChHHHHHHHHHHHHHHHHc
Q 008340 319 YKHPQ---G----------GSHKTSLRVLAKKFLSREIQQSGFGHDSTEDARAAMELALLKIRN 369 (569)
Q Consensus 319 ~~~~~---g----------~~~k~sLk~La~~~Lg~~Iq~~~~~HdS~EDA~Atl~L~~~kl~~ 369 (569)
.+... | ...+.+|..||+. ||++-. +..|.|-.||.-|...|.+..+.
T Consensus 204 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~-L~v~r~--g~~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 204 YKIIQEFKNPQLQQSSQQQQQQQYSLTTLADE-LGLPRF--SIFTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp HHHHTTTCC-------------CCSHHHHHHH-TTCCCC--GGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccccccccccccCCCHHHHHHH-cCCCcc--CcccccHHHHHHHHHHHHHHHHH
Confidence 55332 2 1246689999985 687532 35799999999999999665543
No 57
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.47 E-value=1.6e+02 Score=25.94 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=46.2
Q ss_pred eecCChHHHHHHHHHhccCCCccEEEEeccccchhhhhhhHhHHHHHHHHHHHhhhhhcccccccccccCCCCcHHHHHH
Q 008340 415 IPVSSDDEVLSKARKEVKNDRIHFVWTQFSELNLHFKKQAKDEAKLNEKLAELISLATCDKKLSDSKRFKSFVTPEIKEI 494 (569)
Q Consensus 415 i~~~~D~ev~~~~~~~v~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (569)
+..+||.|++..++++++..++..|...-..-+ + .-...+.+-.. ...+..+. + +
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqde----k------rrrerleefek-qgvdvrtv-------e---d---- 60 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDE----K------RRRERLEEFEK-QGVDVRTV-------E---D---- 60 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCH----H------HHHHHHHHHHT-TTCEEEEC-------C---S----
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchH----H------HHHHHHHHHHH-cCCceeee-------c---c----
Confidence 445789999999999998888776643322111 1 11111111100 00011110 0 1
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeC
Q 008340 495 LARTDARVNSLYTALPTNTMLIICTG 520 (569)
Q Consensus 495 ~~~~~~~i~~iy~~lP~~t~liv~sg 520 (569)
-+.+.+.|..||+.-|.-.+.++.|-
T Consensus 61 kedfrenireiwerypqldvvvivtt 86 (162)
T 2l82_A 61 KEDFRENIREIWERYPQLDVVVIVTT 86 (162)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 23577889999999999888777764
No 58
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=22.69 E-value=28 Score=33.95 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=85.5
Q ss_pred EEEEeceecCCCCceEEEEEEEEeeCeEEEEEEEecCC--CCCCCcEeecCCChhhhcCCCCCHHHHHHHHHHhhcCCCE
Q 008340 215 LALDCEMCYTNEGLELTRVTLVDIKGQVLLDKLVKPSN--AIVDYNTRYSGITHEMLSGVTTSLKDIQEEFLKLVYKETI 292 (569)
Q Consensus 215 vAiDcEm~~t~~g~eL~rVsvVd~~G~vv~D~lVkP~~--~I~dy~T~~SGIT~e~L~~~~~tl~dVq~~l~~ll~~~tI 292 (569)
.=||+|-.-. ..++++|.--...--+.-|=+|.. .+.+-..--|||--.+|.++.|.| ...+.+.++++.|
T Consensus 60 tWiDIEG~p~----DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL---~S~vi~~LP~nMV 132 (243)
T 3q7c_A 60 TWMDIEGRPE----DPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGL---TSAVIDALPRNMV 132 (243)
T ss_dssp CEEEEESCTT----SCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTH---HHHHHHHSCTTCE
T ss_pred eEEecCCCCC----CCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCch---HHHHHHhCCcCcE
Confidence 3488885332 345677777433333566777754 222223345899999999997765 5568889999999
Q ss_pred EEEeCchhhHHHHcccCC----Cccchhh------hccccCCCCCCchHHHHHHHhcCcccccC-------CCCCChHHH
Q 008340 293 LVGHSLENDLLALKISHG----LVIDTAV------LYKHPQGGSHKTSLRVLAKKFLSREIQQS-------GFGHDSTED 355 (569)
Q Consensus 293 LVGHsL~~DL~aLki~hp----~viDT~~------L~~~~~g~~~k~sLk~La~~~Lg~~Iq~~-------~~~HdS~ED 355 (569)
|-..+. -|++-|=-.|. .+||... .|... -.-.-+.||+.+-|+-+... ...|+|+-|
T Consensus 133 lT~QGs-DDIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~----VWd~f~~LC~~H~GvVv~KKKkg~~~s~~PHCALLD 207 (243)
T 3q7c_A 133 ITCQGS-DDIRKLLESQGRKDIKLIDIALSKTDSRKYENA----VWDQYKDLCHMHTGVVVEKKKRGGKEEITPHCALMD 207 (243)
T ss_dssp EEESSH-HHHHHHHHHTTCTTSEEEECCCCHHHHTTTHHH----HHHHHGGGCCCBCSCEECCCSSSSCCEECCCCHHHH
T ss_pred EEeeCh-HHHHHHHHhcCCccceEEEeecCHHHHHHHHHH----HHHHHHHHHHhcCceEEeccccCCCCCCCchHHHHH
Confidence 999884 56666544565 4788653 22221 11236678888888887752 246999999
Q ss_pred HHH
Q 008340 356 ARA 358 (569)
Q Consensus 356 A~A 358 (569)
|.+
T Consensus 208 CIM 210 (243)
T 3q7c_A 208 CIM 210 (243)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
Done!