BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008341
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NXC|A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals
The Molecular Basis For Substrate Specificity Among
Class I Enzymes (Family 47 Glycosidases)
Length = 478
Score = 338 bits (868), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 186/461 (40%), Positives = 270/461 (58%), Gaps = 30/461 (6%)
Query: 110 QRKQKVKDAMIHAWSSYEKYAWGQDELQLL----YSMCLFWRISDYS------------F 153
+++ K+K+ M HAW++Y++YAWG +EL+ + +S LF I +
Sbjct: 19 EKRAKIKEMMTHAWNNYKRYAWGLNELKPISKEGHSSSLFGNIKGATIVDALDTLFIMGM 78
Query: 154 SSEFM----WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLL 209
+EF WI LDFN + + SVFE IR VGGLLSAY LSG+++F +KA ++ +LL
Sbjct: 79 KTEFQEAKSWIKKYLDFNVNAEVSVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLL 138
Query: 210 PAWNTRTGIPYNVINLAHGNPHNPSW-TGGESILADSGTEQLELIALSQRTGDPKYRQKA 268
PA++T +GIP+ ++N+ G N W +GG SILA+ GT LE + LS +GDP + +K
Sbjct: 139 PAFHTPSGIPWALLNMKSGIGRNWPWASGGSSILAEFGTLHLEFMHLSHLSGDPVFAEKV 198
Query: 269 EKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVK 328
K+ LNK +GL P Y++P G ++ G +GDSFYEYLLK W+ +KT
Sbjct: 199 MKIRTVLNKLDKPEGLYPNYLNPSSGQWGQHHVSVGGLGDSFYEYLLKAWLMSDKTDLEA 258
Query: 329 PYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGP 388
+ M+ +++ + + + R + TYI E G L KM L CFA GM ALG+ G
Sbjct: 259 --KKMYFDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLTCFAGGMFALGADGAPE 316
Query: 389 GDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWN----ILRPETVE 444
++ +L L E+A TC+ Y T KL E + F DG ++ T N ILRPE +E
Sbjct: 317 ARAQHYLELGAEIARTCHESYNRTYVKLGPEAFRF-DGGVEAIATRQNEKYYILRPEVIE 375
Query: 445 SLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDK--DNMMQSFFLAET 502
+ Y+WRLT + Y+ W W +A E + R+ GY GL+DV + D++ QSFFLAET
Sbjct: 376 TYMYMWRLTHDPKYRTWAWEAVEALESHCRVNGGYSGLRDVYIARESYDDVQQSFFLAET 435
Query: 503 LKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQHDGEISGR 543
LKYLYL+FS ++ L+ W+FNTEAHP I+ + EI G+
Sbjct: 436 LKYLYLIFSDDDLLPLEHWIFNTEAHPFPILREQKKEIDGK 476
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 315 bits (808), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 189/465 (40%), Positives = 264/465 (56%), Gaps = 40/465 (8%)
Query: 103 AEDPIDIQRKQK-VKDAMIHAWSSYEKYAWGQDELQ---------------LLYSMCLFW 146
A+ P+ + +QK V D +HAW Y K+AWG DEL+ L+ ++ W
Sbjct: 1 AQGPVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMW 60
Query: 147 RIS-DYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIA 205
+ F W++ L F K D ++FE+TIR++GGLLSAY LSGD +FL KA D
Sbjct: 61 ILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFG 120
Query: 206 DRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYR 265
+RL+PA+ T + IPY+ +N+ G H P WT +S +A+ + QLE LS+ TGD K++
Sbjct: 121 NRLMPAFRTPSKIPYSDVNIGTGVAHPPRWT-SDSTVAEVTSIQLEFRELSRLTGDKKFQ 179
Query: 266 QKAEKVIVELNK-TFPADGLLPIYISPDRGTPSY-STITFGAMGDSFYEYLLKVWIQGNK 323
+ EKV ++ + DGL+P++I+ G ++ T GA DS+YEYLLK WIQG K
Sbjct: 180 EAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGK 239
Query: 324 --TSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIAL 381
T ++ Y + E LL R S PS T++ E KMD L CF PG +AL
Sbjct: 240 QETQLLEDYVEAIEGVRTHLL---RHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLAL 296
Query: 382 GSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFF-------RDGQDMSVGTS 434
G P + LA+EL TCY + T L+ E F R ++
Sbjct: 297 GVYHGLPASH---MELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADR 353
Query: 435 WNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIES-GYVGLKDVNTGDKD-- 491
N+LRPETVESLFYL+R+TG++ Y++WGW I Q+F + +R+ S GY + +V K
Sbjct: 354 HNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEP 413
Query: 492 -NMMQSFFLAETLKYLYLLFS-PTTVISLDEWVFNTEAHPLKIVT 534
+ M+SFFL ETLKYL+LLFS ++SLD +VFNTEAHPL I T
Sbjct: 414 RDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPIWT 458
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/465 (40%), Positives = 263/465 (56%), Gaps = 40/465 (8%)
Query: 103 AEDPIDIQRKQK-VKDAMIHAWSSYEKYAWGQDELQ---------------LLYSMCLFW 146
+ P+ + +QK V D +HAW Y K+AWG DEL+ L+ ++ W
Sbjct: 1 TQGPVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMW 60
Query: 147 RIS-DYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIA 205
+ F W++ L F K D ++FE+TIR++GGLLSAY LSGD +FL KA D
Sbjct: 61 ILGLRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFG 120
Query: 206 DRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYR 265
+RL+PA+ T + IPY+ +N+ G H P WT +S +A+ + QLE LS+ TGD K++
Sbjct: 121 NRLMPAFRTPSKIPYSDVNIGTGVAHPPRWT-SDSTVAEVTSIQLEFRELSRLTGDKKFQ 179
Query: 266 QKAEKVIVELNK-TFPADGLLPIYISPDRGTPSY-STITFGAMGDSFYEYLLKVWIQGNK 323
+ EKV ++ + DGL+P++I+ G ++ T GA DS+YEYLLK WIQG K
Sbjct: 180 EAVEKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGK 239
Query: 324 --TSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIAL 381
T ++ Y + E LL R S PS T++ E KMD L CF PG +AL
Sbjct: 240 QETQLLEDYVEAIEGVRTHLL---RHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLAL 296
Query: 382 GSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFF-------RDGQDMSVGTS 434
G P + LA+EL TCY + T L+ E F R ++
Sbjct: 297 GVYHGLPASH---MELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADR 353
Query: 435 WNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIES-GYVGLKDVNTGDKD-- 491
N+LRPETVESLFYL+R+TG++ Y++WGW I Q+F + +R+ S GY + +V K
Sbjct: 354 HNLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEP 413
Query: 492 -NMMQSFFLAETLKYLYLLFS-PTTVISLDEWVFNTEAHPLKIVT 534
+ M+SFFL ETLKYL+LLFS ++SLD +VFNTEAHPL I T
Sbjct: 414 RDKMESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPIWT 458
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/462 (40%), Positives = 262/462 (56%), Gaps = 40/462 (8%)
Query: 106 PIDIQRKQK-VKDAMIHAWSSYEKYAWGQDELQ---------------LLYSMCLFWRIS 149
P+ + +QK V D +HAW Y K+AWG DEL+ L+ ++ W +
Sbjct: 82 PVHLNYRQKGVIDVFLHAWKGYRKFAWGHDELKPVSRSFSEWFGLGLTLIDALDTMWILG 141
Query: 150 -DYSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRL 208
F W++ L F K D ++FE+TIR++GGLLSAY LSGD +FL KA D +RL
Sbjct: 142 LRKEFEEARKWVSKKLHFEKDVDVNLFESTIRILGGLLSAYHLSGDSLFLRKAEDFGNRL 201
Query: 209 LPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKA 268
+PA+ T + IPY+ +N+ G H P WT +S +A+ + QLE LS+ TGD K+++
Sbjct: 202 MPAFRTPSKIPYSDVNIGTGVAHPPRWT-SDSTVAEVTSIQLEFRELSRLTGDKKFQEAV 260
Query: 269 EKVIVELNK-TFPADGLLPIYISPDRGTPSY-STITFGAMGDSFYEYLLKVWIQGNK--T 324
EKV ++ + DGL+P++I+ G ++ T GA DS+YEYLLK WIQG K T
Sbjct: 261 EKVTQHIHGLSGKKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQET 320
Query: 325 SAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSS 384
++ Y + E LL R S PS T++ E KMD L CF PG +ALG
Sbjct: 321 QLLEDYVEAIEGVRTHLL---RHSEPSKLTFVGELAHGRFSAKMDHLVCFLPGTLALGVY 377
Query: 385 GYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFF-------RDGQDMSVGTSWNI 437
P + LA+EL TCY + T L+ E F R ++ N+
Sbjct: 378 HGLPASH---MELAQELMETCYQMNRQMETGLSPEIVHFNLYPQPGRRDVEVKPADRHNL 434
Query: 438 LRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIES-GYVGLKDVNTGDKD---NM 493
LRPETVESLFYL+R+TG++ Y++WGW I Q+F + +R+ S GY + +V K +
Sbjct: 435 LRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDK 494
Query: 494 MQSFFLAETLKYLYLLFS-PTTVISLDEWVFNTEAHPLKIVT 534
M+SFFL ETLKYL+LLFS ++SLD +VFNTEAHPL I T
Sbjct: 495 MESFFLGETLKYLFLLFSDDPNLLSLDAYVFNTEAHPLPIWT 536
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 181/503 (35%), Positives = 259/503 (51%), Gaps = 86/503 (17%)
Query: 110 QRKQKVKDAMIHAWSSYEKYAWGQD----------------------------ELQLLYS 141
+ + +++ + +W Y K+ WG D L L+Y+
Sbjct: 4 EMRDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYN 63
Query: 142 MCLFWRISDYSFSSEFM----WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLS----- 192
++ F +E WI + LDF+ + +VFETTIR++GGLLSAY LS
Sbjct: 64 SSTLYKSE---FEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEV 120
Query: 193 GDK-VFLEKARDIADRLLPAW-NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQL 250
G+K V+L KA D+ DRL A+ +T+TGIPY+ INL G GG S A+ T Q+
Sbjct: 121 GNKTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQM 180
Query: 251 ELIALSQRTGDPKYRQKAEKVIVELNKTFPA----DGLLPIYISPDRGTPSYSTITFGAM 306
E L+ TG+ Y + E+V L K DGL+PIY PD G STI FG+
Sbjct: 181 EFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSR 240
Query: 307 GDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLS-LVRRSTPSSFTYICEKN---GD 362
GDSFYEYLLK ++ ++T Y D++ SM+G+ L+ +S PSS YI E+
Sbjct: 241 GDSFYEYLLKQYLLTHET----LYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLHG 296
Query: 363 SLIDKMDELACFAPGMIALGSS-GYGPGDSEK--FLS-----LAEELAWTCYNFYQSTPT 414
L KMD L CF G++A GS+ G ++ + F S LA+ + TCY Y+ + +
Sbjct: 297 QLSPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSS 356
Query: 415 KLAGENYFFRDG---QD----MSVGTSW-------NILRPETVESLFYLWRLTGNKTYKE 460
LA E F DG QD SVG + N+ RPETVES+ +++ L+ + Y+E
Sbjct: 357 GLAPEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYRE 416
Query: 461 WGWNIFQAFEKNSRIESG------YVGLKDVNT--GDKDNMMQSFFLAETLKYLYLLFSP 512
WG I +F +N+ ++ + L D T K N M+SF+LAETLKYLY+LF
Sbjct: 417 WGAEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILF-- 474
Query: 513 TTVISLDEWVFNTEAHPLKIVTQ 535
L + VFNTEAHP ++ +
Sbjct: 475 LDEFDLTKVVFNTEAHPFPVLDE 497
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 234 bits (598), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 181/501 (36%), Positives = 258/501 (51%), Gaps = 86/501 (17%)
Query: 112 KQKVKDAMIHAWSSYEKYAWGQD----------------------------ELQLLYSMC 143
+ +++ + +W Y K+ WG D L L+Y+
Sbjct: 40 RDRIESMFLESWRDYSKHGWGYDVYGPIEHTSHNMPRGNQPLGWIIVDSVDTLMLMYNSS 99
Query: 144 LFWRISDYSFSSEFM----WIANSLDFNKSYDASVFETTIRVVGGLLSAYDLS-----GD 194
++ F +E WI + LDF+ + +VFETTIR++GGLLSAY LS G+
Sbjct: 100 TLYKSE---FEAEIQRSEHWINDVLDFDIDAEVNVFETTIRMLGGLLSAYHLSDVLEVGN 156
Query: 195 K-VFLEKARDIADRLLPAW-NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL 252
K V+L KA D+ DRL A+ +T+TGIPY+ INL G GG S A+ T Q+E
Sbjct: 157 KTVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKNHADGGASSTAEFTTLQMEF 216
Query: 253 IALSQRTGDPKYRQKAEKVIVELNKTFPA----DGLLPIYISPDRGTPSYSTITFGAMGD 308
L+ TG+ Y + E+V L K DGL+PIY PD G STI FG+ GD
Sbjct: 217 KYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTGKFGASTIRFGSRGD 276
Query: 309 SFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLS-LVRRSTPSSFTYICEKN---GDSL 364
SFYEYLLK ++ ++T Y D++ SM+G+ L+ +S PSS YI E+ L
Sbjct: 277 SFYEYLLKQYLLTHET----LYYDLYRKSMEGMKKHLLAQSKPSSLWYIGEREQGLQGQL 332
Query: 365 IDKMDELACFAPGMIALGSS-GYGPGDSEK--FLS-----LAEELAWTCYNFYQSTPTKL 416
KMD L CF G++A GS+ G ++ + F S LA+ + TCY Y+ + + L
Sbjct: 333 SPKMDHLVCFMGGLLASGSTEGLSIHEARRRPFFSKSDWDLAKGITDTCYQMYKQSSSGL 392
Query: 417 AGENYFFRDG---QD----MSVGTSW-------NILRPETVESLFYLWRLTGNKTYKEWG 462
A E F DG QD SVG + N+ RPETVES+ +++ L+ + Y+EWG
Sbjct: 393 APEIVVFNDGNIKQDGWWRSSVGDFFVKPLDRHNLQRPETVESIMFMYHLSHDHKYREWG 452
Query: 463 WNIFQAFEKNSRIESG------YVGLKDVNT--GDKDNMMQSFFLAETLKYLYLLFSPTT 514
I +F +N+ ++ + L D T K N M+SF+LAETLKYLY+LF
Sbjct: 453 AEIATSFFENTCVDCNDPKLRRFTSLSDCITLPTKKSNNMESFWLAETLKYLYILF--LD 510
Query: 515 VISLDEWVFNTEAHPLKIVTQ 535
L + VFNTEAHP ++ +
Sbjct: 511 EFDLTKVVFNTEAHPFPVLDE 531
>pdb|1KKT|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KKT|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|A Chain A, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRE|B Chain B, Structure Of P. Citrinum Alpha 1,2-Mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|A Chain A, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
pdb|1KRF|B Chain B, Structure Of P. Citrinum Alpha 1,2-mannosidase Reveals The
Basis For Differences In Specificity Of The Er And Golgi
Class I Enzymes
Length = 511
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 237/485 (48%), Gaps = 77/485 (15%)
Query: 111 RKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCL----FWRIS--DYSFSSEFMWIAN-- 162
+ VK+A HAW+ Y KYA+ DEL + + W S D ++ M A+
Sbjct: 40 KADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKADVV 99
Query: 163 --------SLDFNKSYD-ASVFETTIRVVGGLLSAYDL----------SGDKV--FLEKA 201
+DF+K+ D S+FETTIR + G+LS YDL + D + L+++
Sbjct: 100 NAILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQS 159
Query: 202 RDIADRLLPAWNTRTGIPYNVINL-AHGNPHNPSWTGGESILADSGTEQLELIALSQRTG 260
R++AD L A++T +G+PYN IN+ +HGN + + T G LA +GT LE LS TG
Sbjct: 160 RNLADVLKFAFDTPSGVPYNNINITSHGN--DGATTNG---LAVTGTLVLEWTRLSDLTG 214
Query: 261 DPKY---RQKAEKVIV--ELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLL 315
D +Y QKAE ++ + + + P GL+ I+ + G + S +++ DSFYEYL+
Sbjct: 215 DEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLI 274
Query: 316 KVWIQGNKTSAVKPYRDMW----ETSMKGLLSLVRRSTPSS---FTYICEKNGDSLIDKM 368
K+++ K + Y+D W E+++K L +S P S T++ + +
Sbjct: 275 KMYVYDPKR--FETYKDRWVLAAESTIKHL-----KSHPKSRPDLTFLSSYSNRNYDLSS 327
Query: 369 DELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQST------------PTKL 416
L CF G LG + D + F+ EL C Y ST P K+
Sbjct: 328 QHLTCFDGGSFLLGGTVL---DRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKV 384
Query: 417 AGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE 476
+ F + + + +LRPE +ES +Y R+TG + Y++W WN F A R +
Sbjct: 385 PSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTD 444
Query: 477 SGYVGLKDVNT---GDKDNMMQSFFLAETLKYLYLLFSPTTVISL-----DEWVFNTEAH 528
SG+ + DVN G K + +SF AE +KY YL S + + +V+NTEAH
Sbjct: 445 SGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAH 504
Query: 529 PLKIV 533
P+ +
Sbjct: 505 PISVA 509
>pdb|2RI8|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI8|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase Complex With
Glycerol
pdb|2RI9|A Chain A, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
pdb|2RI9|B Chain B, Penicillium Citrinum Alpha-1,2-Mannosidase In Complex With
A Substrate Analog
Length = 475
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 237/485 (48%), Gaps = 77/485 (15%)
Query: 111 RKQKVKDAMIHAWSSYEKYAWGQDELQLLYSMCL----FWRIS--DYSFSSEFMWIAN-- 162
+ VK+A HAW+ Y KYA+ DEL + + W S D ++ M A+
Sbjct: 5 KADAVKEAFQHAWNGYMKYAFPHDELTPVSNGHADSRNGWGASAVDALSTAVIMGKADVV 64
Query: 163 --------SLDFNKSYD-ASVFETTIRVVGGLLSAYDL----------SGDKV--FLEKA 201
+DF+K+ D S+FETTIR + G+LS YDL + D + L+++
Sbjct: 65 NAILEHVADIDFSKTSDTVSLFETTIRYLAGMLSGYDLLQGPAKNLVDNQDLIDGLLDQS 124
Query: 202 RDIADRLLPAWNTRTGIPYNVINL-AHGNPHNPSWTGGESILADSGTEQLELIALSQRTG 260
R++AD L A++T +G+PYN IN+ +HGN + + T G LA +GT LE LS TG
Sbjct: 125 RNLADVLKFAFDTPSGVPYNNINITSHGN--DGATTNG---LAVTGTLVLEWTRLSDLTG 179
Query: 261 DPKY---RQKAEKVIV--ELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLL 315
D +Y QKAE ++ + + + P GL+ I+ + G + S +++ DSFYEYL+
Sbjct: 180 DEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDGQFADSRVSWNGGDDSFYEYLI 239
Query: 316 KVWIQGNKTSAVKPYRDMW----ETSMKGLLSLVRRSTPSS---FTYICEKNGDSLIDKM 368
K+++ K + Y+D W E+++K L +S P S T++ + +
Sbjct: 240 KMYVYDPKR--FETYKDRWVLAAESTIKHL-----KSHPKSRPDLTFLSSYSNRNYDLSS 292
Query: 369 DELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQST------------PTKL 416
L CF G LG + D + F+ EL C Y ST P K+
Sbjct: 293 QHLTCFDGGSFLLGGTVL---DRQDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKV 349
Query: 417 AGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE 476
+ F + + + +LRPE +ES +Y R+TG + Y++W WN F A R +
Sbjct: 350 PSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYRDWVWNAFVAINSTCRTD 409
Query: 477 SGYVGLKDVNT---GDKDNMMQSFFLAETLKYLYLLFSPTTVISL-----DEWVFNTEAH 528
SG+ + DVN G K + +SF AE +KY YL S + + +V+NTEAH
Sbjct: 410 SGFAAVSDVNKANGGSKYDNQESFLFAEVMKYSYLAHSEDAAWQVQKGGKNTFVYNTEAH 469
Query: 529 PLKIV 533
P+ +
Sbjct: 470 PISVA 474
>pdb|1HCU|A Chain A, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|B Chain B, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|C Chain C, Alpha-1,2-Mannosidase From Trichoderma Reesei
pdb|1HCU|D Chain D, Alpha-1,2-Mannosidase From Trichoderma Reesei
Length = 503
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 137/489 (28%), Positives = 216/489 (44%), Gaps = 78/489 (15%)
Query: 111 RKQKVKDAMIHAWSSYEKYA-------------------WGQDELQLLYSMCLFWRISDY 151
R VK A +W++Y +A WG + L + L + D
Sbjct: 15 RAAAVKAAFQTSWNAYHHFAFPHDDLHPVSNSFDDERNGWGSSAIDGLDTAIL---MGDA 71
Query: 152 SFSSEFMWIANSLDFNKSYDA----SVFETTIRVVGGLLSAYDL------------SGDK 195
+ + ++F + A SVFET IR +GGLLSAYDL +
Sbjct: 72 DIVNTILQYVPQINFTTTAVANQGSSVFETNIRYLGGLLSAYDLLRGPFSSLATNQTLVN 131
Query: 196 VFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIAL 255
L +A+ +A+ L A+ T +G+P + NP + +A+ G+ LE L
Sbjct: 132 SLLRQAQTLANGLKVAFTTPSGVPDPTVFF---NPTVRRSGASSNNVAEIGSLVLEWTRL 188
Query: 256 SQRTGDPKYRQKAEKVIVEL--NKTFPAD--GLLPIYISPDRGTPSYSTITFGAMGDSFY 311
S TG+P+Y Q A+K L K P GL+ ++S GT S+ ++ + DSFY
Sbjct: 189 SDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGTFQDSSGSWSGLMDSFY 248
Query: 312 EYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLV--RRSTPSSFTYICEKNGDSLIDKMD 369
EYL+K+++ A Y+D W + + ST T++ NG S
Sbjct: 249 EYLIKMYLY--DPVAFAHYKDRWVLGADSTIGHLGSHPSTRKDLTFLSSYNGQSTSPNSG 306
Query: 370 ELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDM 429
LA F G LG + +K++ +LA + + Y T + + E + + D
Sbjct: 307 HLASFGGGNFILGGILL---NEQKYIDFGIKLASSYFGTYTQTASGIGPEGFAWVDSVTG 363
Query: 430 SVGTS------------------WNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEK 471
+ G+ + ILRPET+ESL+Y +R+TG+ +++ W A E
Sbjct: 364 AGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIED 423
Query: 472 NSRIESGYVGLKDV---NTGDKDNMMQSFFLAETLKYLYLLFSPTTVISL-----DEWVF 523
R S Y + DV N G + M+SF+ AE LKY YL+F+ + + + +++VF
Sbjct: 424 ACRAGSAYSSINDVTQANGGGASDDMESFWFAEALKYAYLIFAEESDVQVQATGGNKFVF 483
Query: 524 NTEAHPLKI 532
NTEAHP I
Sbjct: 484 NTEAHPFSI 492
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 185/437 (42%), Gaps = 53/437 (12%)
Query: 122 AWSSYEKYAWGQDE-------------------LQLLYSMCLFWRIS-DYSFSSEFMWIA 161
AW Y AWG+DE L L+ ++ W + D F + W+
Sbjct: 24 AWQGYVAKAWGKDEINPVSGTSRSFFIEGHDLGLSLVEALDTLWIMGLDAEFQAGVDWVK 83
Query: 162 NSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRT-GIPY 220
+L F+ +A VFET IR+VGGLLSA+ SGD V L KARD+ADRL A+ G+P+
Sbjct: 84 ANLSFDVDGNAQVFETNIRLVGGLLSAHLASGDPVLLAKARDLADRLAKAFEASPHGLPW 143
Query: 221 NVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFP 280
+NL G +P E+ LA+ GT E LSQ TG+ KY A++ +
Sbjct: 144 RYVNLRTGAVSDP-----ETNLAEIGTYLSEFGVLSQLTGERKYFDMAKRAMRHTLDRRS 198
Query: 281 ADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWI----QGNKTSAVKPYRDMWET 336
GL+ I G + + DSFYEYL W + K AV+
Sbjct: 199 KIGLMAANIHAMTGAFTSRNASIDVYADSFYEYLWDAWALFGDEDCKRWAVECVDAQLAH 258
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLS 396
K R F + + G ELA + G+ LG G + S
Sbjct: 259 QAK------RYDGRLWFPMVDFETGAVTGTAQSELAAYYAGL--LGQVGRKAQGDDYLAS 310
Query: 397 LAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNK 456
+ + Q+T + E+ GQ T LRPE ++ LW + +
Sbjct: 311 ---------FTYLQAT-FGVIPESIDVTTGQPRRKHTG---LRPEYPDACLNLWLIDRDP 357
Query: 457 TYKEWGWNIFQAFEKNSRIESGYVGLKDVNTG--DKDNMMQSFFLAETLKYLYLLFSPTT 514
Y+ ++ + SR GY LKD+ T +D+ ++ +E +KY YLLFS T
Sbjct: 358 RYRRLAAIHYREMKATSRAAFGYTALKDITTRPMTQDDNCPGYWWSEQMKYYYLLFSDTP 417
Query: 515 VISLDEWVFNTEAHPLK 531
I + +TEA+ L+
Sbjct: 418 RIDYGQLQLSTEANVLR 434
>pdb|1DM0|A Chain A, Shiga Toxin
pdb|1DM0|L Chain L, Shiga Toxin
Length = 287
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 221 NVINLAHGNPHNPSWTGGESILA-DSGTEQLELIALSQRTGDPKY-RQKAEKVIVELNKT 278
NVI A G P +GG S+L DSGT L A+ R DP+ R ++IVE N
Sbjct: 18 NVIRSAIGTPLQTISSGGTSLLMIDSGTGD-NLFAVDVRGIDPEEGRFNNLRLIVERNNL 76
Query: 279 FPADGLLPIYISPDRGTPSYSTITFGAM------GDSFYEYLLKV------WIQGNKTSA 326
+ G + + +S +TF GDS Y L +V +Q N+ S
Sbjct: 77 Y-VTGFVNRTNNVFYRFADFSHVTFPGTTAVTLSGDSSYTTLQRVAGISRTGMQINRHSL 135
Query: 327 VKPYRDMWETSMKGLLSLVRRSTPSSFTYICE 358
Y D+ S L V R+ T E
Sbjct: 136 TTSYLDLMSHSGTSLTQSVARAMLRFVTVTAE 167
>pdb|1R4Q|A Chain A, Shiga Toxin
pdb|1R4Q|L Chain L, Shiga Toxin
Length = 293
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 221 NVINLAHGNPHNPSWTGGESILA-DSGTEQLELIALSQRTGDPKY-RQKAEKVIVELNKT 278
NVI A G P +GG S+L DSGT L A+ R DP+ R ++IVE N
Sbjct: 18 NVIRSAIGTPLQTISSGGTSLLMIDSGTGD-NLFAVDVRGIDPEEGRFNNLRLIVERNNL 76
Query: 279 FPADGLLPIYISPDRGTPSYSTITFGAM------GDSFYEYLLKVW------IQGNKTSA 326
+ G + + +S +TF GDS Y L +V +Q N+ S
Sbjct: 77 Y-VTGFVNRTNNVFYRFADFSHVTFPGTTAVTLSGDSSYTTLQRVAGISRTGMQINRHSL 135
Query: 327 VKPYRDMWETSMKGLLSLVRRSTPSSFTYICE 358
Y D+ S L V R+ T E
Sbjct: 136 TTSYLDLMSHSGTSLTQSVARAMLRFVTVTAE 167
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 167 NKSYDASVFETTIRVVGGLLSAYDLSGD--KVFLEKARD----IADRLLPAWNTRTGIPY 220
N +YD +F T I+ V + A DLS +V + R IAD ++P+ R +
Sbjct: 251 NSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLR 310
Query: 221 NVINLA--HGN 229
+I A HGN
Sbjct: 311 RIIRRAVRHGN 321
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 167 NKSYDASVFETTIRVVGGLLSAYDLSGD--KVFLEKARD----IADRLLPAWNTRTGIPY 220
N +YD +F T I+ V + A DLS +V + R IAD ++P+ R +
Sbjct: 251 NSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLR 310
Query: 221 NVINLA--HGN 229
+I A HGN
Sbjct: 311 RIIRRAVRHGN 321
>pdb|2CIV|A Chain A, Chloroperoxidase Bromide Complex
pdb|2CIW|A Chain A, Chloroperoxidase Iodide Complex
pdb|2CIX|A Chain A, Chloroperoxidase Complexed With Cyclopentanedione
pdb|2CIY|A Chain A, Chloroperoxidase Complexed With Cyanide And Dmso
pdb|2CIZ|A Chain A, Chloroperoxidase Complexed With Acetate
pdb|2CJ0|A Chain A, Chloroperoxidase Complexed With Nitrate
pdb|2CJ1|A Chain A, Chloroperoxidase Complexed With Formate (Ethylene Glycol
Cryoprotectant)
pdb|2CJ2|A Chain A, Chloroperoxidase Complexed With Formate (Sugar
Cryoprotectant)
pdb|2J18|A Chain A, Chloroperoxidase Mixture Of Ferric And Ferrous States (Low
Dose Data Set)
pdb|2J19|A Chain A, Ferrous Chloroperoxidase (High Dose Data Set)
pdb|2J5M|A Chain A, Structure Of Chloroperoxidase Compound 0
pdb|1CPO|A Chain A, Chloroperoxidase
pdb|2CPO|A Chain A, Chloroperoxidase
Length = 299
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 150 DYSFSSE--FMWIANSLDF--NKSYDASVFETTIRVVGG 184
D+SFS + +ANS DF N+++DA F+T++ VV G
Sbjct: 107 DHSFSRKDYKQGVANSNDFIDNRNFDAETFQTSLDVVAG 145
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 22 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 58
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 99
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 22 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 58
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 22 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 58
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 24 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 60
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
Length = 82
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 24 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 60
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 66
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 17 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 53
>pdb|4FQ2|H Chain H, Crystal Structure Of 10-1074 Fab
Length = 244
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 273 VELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQG 321
++LN PAD + + RG Y ++FG FY Y + VW +G
Sbjct: 80 LKLNSVTPADTAVYYCATARRGQRIYGVVSFGEF---FYYYSMDVWGKG 125
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELAC 373
S +G +R+ TY C N D LIDK C
Sbjct: 156 SCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRC 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,921,791
Number of Sequences: 62578
Number of extensions: 778203
Number of successful extensions: 1752
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 35
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)