Query 008341
Match_columns 569
No_of_seqs 179 out of 952
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 22:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2431 1, 2-alpha-mannosidase 100.0 1E-139 3E-144 1080.0 36.9 420 107-535 90-545 (546)
2 PTZ00470 glycoside hydrolase f 100.0 7E-138 2E-142 1129.9 39.9 423 106-535 67-521 (522)
3 KOG2204 Mannosyl-oligosacchari 100.0 2E-132 4E-137 1056.9 28.2 514 13-533 28-625 (625)
4 PF01532 Glyco_hydro_47: Glyco 100.0 6E-129 1E-133 1053.0 27.3 403 118-532 1-452 (452)
5 KOG2429 Glycosyl hydrolase, fa 100.0 5E-110 1E-114 884.9 28.5 401 107-534 29-471 (622)
6 KOG2430 Glycosyl hydrolase, fa 100.0 1.5E-85 3.2E-90 665.8 20.7 401 108-535 6-459 (587)
7 cd00249 AGE AGE domain; N-acyl 98.5 1.2E-05 2.6E-10 85.3 20.8 275 177-476 54-341 (384)
8 KOG2204 Mannosyl-oligosacchari 98.3 7.9E-06 1.7E-10 89.7 12.6 335 106-476 12-369 (625)
9 cd00249 AGE AGE domain; N-acyl 98.1 0.00079 1.7E-08 71.5 24.8 247 203-475 18-277 (384)
10 COG1331 Highly conserved prote 97.6 0.00016 3.6E-09 81.9 8.1 171 105-277 378-569 (667)
11 PF07944 DUF1680: Putative gly 97.4 0.0016 3.5E-08 73.1 13.3 210 179-421 128-344 (520)
12 PF07944 DUF1680: Putative gly 97.1 0.0084 1.8E-07 67.4 14.4 240 205-482 25-280 (520)
13 PF07221 GlcNAc_2-epim: N-acyl 96.7 0.056 1.2E-06 57.1 16.6 241 250-510 28-288 (346)
14 PF07221 GlcNAc_2-epim: N-acyl 96.7 0.028 6.1E-07 59.4 13.8 284 177-486 22-326 (346)
15 PF03663 Glyco_hydro_76: Glyco 96.6 0.0011 2.4E-08 71.2 2.3 151 182-345 94-257 (370)
16 PTZ00470 glycoside hydrolase f 96.5 0.042 9.1E-07 61.9 14.4 165 150-325 309-500 (522)
17 PF07470 Glyco_hydro_88: Glyco 96.2 0.083 1.8E-06 55.7 13.9 247 181-486 30-301 (336)
18 cd04791 LanC_SerThrkinase Lant 95.4 0.74 1.6E-05 47.6 16.8 189 180-410 87-278 (321)
19 COG1331 Highly conserved prote 94.9 0.35 7.6E-06 55.6 13.1 279 172-485 265-584 (667)
20 PF01532 Glyco_hydro_47: Glyco 94.3 0.11 2.4E-06 57.6 7.4 167 150-325 233-434 (452)
21 PF07470 Glyco_hydro_88: Glyco 93.0 0.44 9.4E-06 50.3 9.0 204 186-416 77-294 (336)
22 cd04791 LanC_SerThrkinase Lant 92.9 0.17 3.6E-06 52.4 5.6 95 174-278 137-232 (321)
23 cd04792 LanM-like LanM-like pr 92.8 7.2 0.00016 46.3 19.8 232 185-475 550-785 (825)
24 COG4403 LcnDR2 Lantibiotic mod 92.7 2.7 5.8E-05 49.9 15.2 239 171-466 541-822 (963)
25 COG3533 Uncharacterized protei 91.0 0.37 7.9E-06 53.7 5.7 73 181-273 136-208 (589)
26 KOG2429 Glycosyl hydrolase, fa 90.3 4.5 9.8E-05 45.7 13.2 220 262-516 31-280 (622)
27 cd04794 euk_LANCL eukaryotic L 89.0 20 0.00043 38.0 16.8 268 154-474 29-307 (343)
28 cd04434 LanC_like LanC-like pr 89.0 29 0.00064 35.5 20.7 254 185-485 11-274 (343)
29 cd04792 LanM-like LanM-like pr 88.2 34 0.00073 40.7 19.7 232 188-472 503-737 (825)
30 PF06917 Pectate_lyase_2: Peri 87.7 0.89 1.9E-05 50.6 5.5 104 193-296 11-127 (557)
31 PF03663 Glyco_hydro_76: Glyco 87.1 0.81 1.8E-05 49.4 4.9 139 189-342 168-317 (370)
32 cd04434 LanC_like LanC-like pr 86.4 42 0.00091 34.4 19.7 272 151-472 25-301 (343)
33 KOG2430 Glycosyl hydrolase, fa 86.1 9.6 0.00021 40.9 11.8 202 190-417 199-402 (587)
34 PF06662 C5-epim_C: D-glucuron 82.2 3.2 6.9E-05 41.1 6.1 101 231-345 22-131 (189)
35 COG2942 N-acyl-D-glucosamine 2 78.7 1.1E+02 0.0024 33.7 16.8 256 201-476 13-342 (388)
36 PF06917 Pectate_lyase_2: Peri 78.4 1.1 2.4E-05 49.9 1.7 139 117-285 331-479 (557)
37 COG2942 N-acyl-D-glucosamine 2 75.2 11 0.00025 41.0 8.2 137 180-319 178-378 (388)
38 COG4225 Predicted unsaturated 73.2 21 0.00046 38.4 9.4 245 182-484 42-317 (357)
39 cd04793 LanC LanC is the cycla 71.3 15 0.00033 39.4 8.1 134 187-343 183-327 (382)
40 TIGR01577 oligosac_amyl oligos 71.1 1.4E+02 0.0031 34.5 16.4 260 128-427 293-592 (616)
41 cd04794 euk_LANCL eukaryotic L 65.2 36 0.00077 36.0 9.3 116 185-325 174-290 (343)
42 KOG2431 1, 2-alpha-mannosidase 64.3 1.8E+02 0.0039 32.5 14.2 186 259-482 89-287 (546)
43 COG4225 Predicted unsaturated 60.3 1.2E+02 0.0027 32.8 12.0 158 150-323 55-222 (357)
44 TIGR02474 pec_lyase pectate ly 54.7 20 0.00044 37.8 5.1 55 247-303 45-102 (290)
45 PF05147 LANC_like: Lanthionin 49.9 4.7 0.0001 41.9 -0.5 150 174-342 104-261 (355)
46 PRK11097 endo-1,4-D-glucanase; 46.1 4.4E+02 0.0096 29.0 15.7 142 141-294 66-229 (376)
47 cd04793 LanC LanC is the cycla 45.6 30 0.00065 37.1 4.9 79 185-281 253-331 (382)
48 PF13677 MotB_plug: Membrane M 43.5 66 0.0014 25.7 5.3 43 1-54 1-44 (58)
49 TIGR02209 ftsL_broad cell divi 42.7 53 0.0011 27.4 5.0 22 50-71 24-45 (85)
50 PF06662 C5-epim_C: D-glucuron 41.7 34 0.00075 33.9 4.2 81 180-270 92-186 (189)
51 COG3533 Uncharacterized protei 41.5 1E+02 0.0022 35.2 8.0 131 309-466 67-207 (589)
52 PF12060 DUF3541: Domain of un 40.5 15 0.00033 36.9 1.5 27 433-468 29-55 (227)
53 PF01270 Glyco_hydro_8: Glycos 39.6 1.4E+02 0.003 32.1 8.7 141 139-292 65-225 (342)
54 PF14937 DUF4500: Domain of un 39.4 25 0.00053 30.6 2.4 32 12-43 20-51 (86)
55 PF13204 DUF4038: Protein of u 39.2 10 0.00023 39.6 0.2 83 261-343 83-175 (289)
56 PF09492 Pec_lyase: Pectic aci 38.9 1.5E+02 0.0033 31.4 8.6 96 245-343 40-143 (289)
57 PRK09039 hypothetical protein; 38.0 64 0.0014 34.8 5.9 57 12-73 12-69 (343)
58 KOG2787 Lanthionine synthetase 37.6 43 0.00093 36.0 4.3 149 107-278 179-361 (403)
59 PF06305 DUF1049: Protein of u 34.4 77 0.0017 25.3 4.5 41 36-76 26-67 (68)
60 PF05426 Alginate_lyase: Algin 29.2 39 0.00084 34.2 2.4 30 446-475 65-94 (272)
61 PF04999 FtsL: Cell division p 28.9 1.2E+02 0.0026 26.2 5.1 41 35-76 21-61 (97)
62 PF05147 LANC_like: Lanthionin 28.8 33 0.00071 35.6 1.8 122 180-325 171-294 (355)
63 COG4403 LcnDR2 Lantibiotic mod 28.6 60 0.0013 39.1 4.0 74 185-274 751-824 (963)
64 PRK11097 endo-1,4-D-glucanase; 27.6 2.4E+02 0.0052 31.0 8.2 92 379-480 125-220 (376)
65 PF06295 DUF1043: Protein of u 26.5 87 0.0019 28.9 4.0 15 59-73 27-41 (128)
66 PRK00888 ftsB cell division pr 24.7 1.6E+02 0.0034 26.4 5.2 20 59-78 43-62 (105)
67 PF05545 FixQ: Cbb3-type cytoc 24.4 60 0.0013 24.8 2.1 22 29-50 13-34 (49)
68 PF11329 DUF3131: Protein of u 23.6 3.9E+02 0.0084 29.3 8.8 135 180-324 38-181 (367)
69 KOG3760 Heparan sulfate-glucur 22.6 1.1E+02 0.0024 33.8 4.4 89 184-279 492-590 (594)
70 PF08135 EPV_E5: Major transfo 21.9 1.1E+02 0.0023 23.3 2.8 22 28-49 13-34 (44)
No 1
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-139 Score=1080.01 Aligned_cols=420 Identities=50% Similarity=0.847 Sum_probs=396.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------HHHhcCCCCCChhHHHHHHHHHHhhcC
Q 008341 107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------LYSMCLFWRISDYSFSSEFMWIANSLD 165 (569)
Q Consensus 107 ~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P---------------------L~IMgl~~~~~~eEF~~A~~~V~~~ld 165 (569)
..++||++|++||.|||.+|+|||||||||+| ++|||| ++||++|++||.++++
T Consensus 90 g~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~~~~d~fglGltiVDslDT~~iMgl-----e~e~~ea~~Wv~~~L~ 164 (546)
T KOG2431|consen 90 GLNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQSFSDWFGLGLTIVDSLDTAMIMGL-----EDEFEEAREWVEKKLH 164 (546)
T ss_pred chhHHHHHHHHHHHHHHhhhhhhcccccccccchhcccccccccceEEechhHHHHhhh-----HHHHHHHHHHHHhhcc
Confidence 47999999999999999999999999999999 899999 9999999999999999
Q ss_pred CCCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCcccccc
Q 008341 166 FNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADS 245 (569)
Q Consensus 166 F~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~ 245 (569)
|+++++||+||||||+||||||||+|||+.+||+||+||||||+|||.+||+|||+.||+.+|.+.+|+|+ +.|++||+
T Consensus 165 f~~~~~VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~-~~SStaEv 243 (546)
T KOG2431|consen 165 FEKDRDVNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWT-GDSSTAEV 243 (546)
T ss_pred cccccceehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCC-Cccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 68999999
Q ss_pred ccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCC--CCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCC
Q 008341 246 GTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPA--DGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNK 323 (569)
Q Consensus 246 GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~--~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~ 323 (569)
+|+||||.+||++|||+||++.|++++++|++.... +||+|++||++||.|..+.|++||+||||||||||+|||+|+
T Consensus 244 ttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~~tI~lGaRgDSyYEYLlKQwlQtg~ 323 (546)
T KOG2431|consen 244 TTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVGSTITLGARGDSYYEYLLKQWLQTGK 323 (546)
T ss_pred eeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCccccceEEeccccchHHHHHHHHHHHccc
Confidence 999999999999999999999999999999995443 699999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHH-hccccCCCCCeeeeccCCC-cccccccccccccchhhhhhcCCCCCCCchHHHHHHHHH
Q 008341 324 TSAVKPYRDMWETSMKGLLS-LVRRSTPSSFTYICEKNGD-SLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEEL 401 (569)
Q Consensus 324 ~~~~~~~~~my~~a~~~i~~-ll~~~~~~~~~~v~~~~g~-~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L 401 (569)
+. +.++++|.+||++|++ |++.+.|+++.||+|..+| ++.++||||.||+||+|+||+...-+ ..++++++|++|
T Consensus 324 ~~--~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHLVCFlpGtL~lG~~~Gl~-~~~~hl~lA~~l 400 (546)
T KOG2431|consen 324 SL--TYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHLVCFLPGTLALGSTNGLP-ASEEHLELAQEL 400 (546)
T ss_pred ch--hHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceEEEeecchhhhccccCCC-cchHHHHHHHHH
Confidence 98 8999999999999998 5577789999999998665 78999999999999999999976432 345899999999
Q ss_pred HHHHHHhhccCCCCccceeEeecCCCc-------cccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcc
Q 008341 402 AWTCYNFYQSTPTKLAGENYFFRDGQD-------MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSR 474 (569)
Q Consensus 402 ~~tC~~~y~~t~tGl~PE~~~f~~~~~-------~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r 474 (569)
++|||+||..+||||+||++.|+..+. +++.|++++||||+|||+|||||+|||.|||||||+|||+|++++|
T Consensus 401 ~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~D~kYqewGW~if~sfekytr 480 (546)
T KOG2431|consen 401 METCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITGDRKYQEWGWEIFQSFEKYTR 480 (546)
T ss_pred HHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecCCchHHHHhHHHHHHHHHhcc
Confidence 999999999999999999999986432 4578999999999999999999999999999999999999999999
Q ss_pred cCc-CccccccCCCC--CCCCCcchHHHHHHHHHHHHhcCCC-CccCCCCeeeccCCCccccccC
Q 008341 475 IES-GYVGLKDVNTG--DKDNMMQSFFLAETLKYLYLLFSPT-TVISLDEWVFNTEAHPLKIVTQ 535 (569)
Q Consensus 475 ~~~-Gya~l~dV~~~--~~~D~meSFflaETLKYLYLLFsd~-~~isLd~~VFnTEaHPl~i~~~ 535 (569)
+++ ||++|.||.+. .++|+|||||||||||||||||+|+ +.++||+||||||||||||...
T Consensus 481 v~~ggytSi~nV~~~~~~~RDkMESF~laETLKYLYLLf~DD~~ilpLdk~VFNTEaHPlPi~~~ 545 (546)
T KOG2431|consen 481 VPSGGYTSIDNVKDQKPKRRDKMESFWLAETLKYLYLLFSDDQSILPLDKWVFNTEAHPLPIYDN 545 (546)
T ss_pred cCCCCccchhhhhhcCCchhhhHHHHHHHHHHHHHHHhhcCCcccccchheEeccCCCCCCCCCC
Confidence 999 89999999763 4599999999999999999999999 8899999999999999999753
No 2
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=100.00 E-value=7e-138 Score=1129.95 Aligned_cols=423 Identities=50% Similarity=0.882 Sum_probs=397.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------HHHhcCCCCCChhHHHHHHHHHHhhc
Q 008341 106 PIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------LYSMCLFWRISDYSFSSEFMWIANSL 164 (569)
Q Consensus 106 ~~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P---------------------L~IMgl~~~~~~eEF~~A~~~V~~~l 164 (569)
....+||++||+||+|||++|++||||||||+| |||||| ++||++|++||++++
T Consensus 67 ~~~~~r~~~Vk~~F~haW~~Y~~~Awg~DEL~P~S~~~~~~~g~g~TlVDSLDTL~IMgl-----~~Ef~~a~~~V~~~l 141 (522)
T PTZ00470 67 KLNIKRRESVREAMKHAWEGYKEYAWGHDELRPLTKRHHEWFGLGLTIIDSLDTLKIMGL-----KKEYKEGRDWVANNL 141 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCcCccceecCcCCccCCCcchhHHHHHHHHHHHcCC-----hHHHHHHHHHHHhhC
Confidence 356799999999999999999999999999999 999999 999999999999989
Q ss_pred CC--CCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccc
Q 008341 165 DF--NKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESIL 242 (569)
Q Consensus 165 dF--~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~l 242 (569)
+| +++..|||||||||+||||||||+||+|++||+||+||||+|+||||||||||++.||+++|....+.|.++.+++
T Consensus 142 ~f~~~~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~l 221 (522)
T PTZ00470 142 KQSKDTGLGVSVFETTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSIL 221 (522)
T ss_pred CCCCCCCCeeeeeeeehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccch
Confidence 99 6688999999999999999999999999999999999999999999999999999999999999888887788999
Q ss_pred cccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCC-CCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhc
Q 008341 243 ADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPA-DGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQG 321 (569)
Q Consensus 243 Ae~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~-~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~ 321 (569)
||+||++|||++||++|||++|+++|++|++.|++.++. +||+|++||+++|+|+.+.+++||++|||||||||+|+|+
T Consensus 222 Ae~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~ 301 (522)
T PTZ00470 222 SEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYT 301 (522)
T ss_pred hhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhc
Confidence 999999999999999999999999999999999997776 8999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCC-CC--CCCchHHHHHH
Q 008341 322 NKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSG-YG--PGDSEKFLSLA 398 (569)
Q Consensus 322 g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~-~~--~~~~~~~l~lA 398 (569)
|+.+ +.|++||++||++|+++|...++.+++|+++.+++.+.++|+||+||+|||++|||.. .. ..++++++++|
T Consensus 302 ~~~d--~~~~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a 379 (522)
T PTZ00470 302 NGRE--ERYRRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVG 379 (522)
T ss_pred CCCc--HHHHHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHH
Confidence 9998 9999999999999999765545668999999999999999999999999999999952 11 12467899999
Q ss_pred HHHHHHHHHhhccCCCCccceeEeecCCCc---cccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHccc
Q 008341 399 EELAWTCYNFYQSTPTKLAGENYFFRDGQD---MSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 475 (569)
Q Consensus 399 ~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~---~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~ 475 (569)
++|++||+++|.++|||++||++.|..+.. +.+.+++|+||||+|||+|||||+||||+||||||+||++|+++|||
T Consensus 380 ~~l~~tC~~~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES~fylyR~TgD~~yre~gW~~f~ai~k~~rt 459 (522)
T PTZ00470 380 EEVTKTCYETYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVESIFILYRLTGDPKYREWAWKIFQAIEKHCKT 459 (522)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999986421 34568999999999999999999999999999999999999999999
Q ss_pred CcCccccccCCC--CCCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCccccccC
Q 008341 476 ESGYVGLKDVNT--GDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIVTQ 535 (569)
Q Consensus 476 ~~Gya~l~dV~~--~~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i~~~ 535 (569)
+|||++|+||+. +.++|+|||||||||||||||||+|+++|+||+||||||||||||++.
T Consensus 460 ~~Gya~i~dV~~~~~~~~D~MeSFflaETLKYlYLlFsd~~~i~ld~~VFnTEAHPl~i~~~ 521 (522)
T PTZ00470 460 ENGYSGLKNVLTVHPQQDDFQESFFLAETLKYLYLLFQPDHVIPLDKYVFNTEAHPIPIQKT 521 (522)
T ss_pred CcccccccccCCCCCCcCCcccchhHHHHHHHHHheecCccccccCCeEECCCCceeecCCC
Confidence 999999999986 456999999999999999999999999999999999999999999765
No 3
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-132 Score=1056.88 Aligned_cols=514 Identities=45% Similarity=0.713 Sum_probs=445.6
Q ss_pred CCcccccCcccccccchhHHHHHHHHHHH----HHHHHhcccc-cchh--------------------hhhhhhhHHHHH
Q 008341 13 SGKLRYCNPAYYLKRPKRLAMLLIVFVSV----TLVVWDRQTL-VREH--------------------EVELSELNEEVT 67 (569)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~~ 67 (569)
++.|-.+.+.+|+++|....+++|.++.+ ..++||+..- ..++ +..++.+++++.
T Consensus 28 ~~~~~~Lc~~a~f~~ps~~~~~~~~~~~~~~~~~~~v~d~~n~~~~~~~~~~~~~~~~~~p~~~~~~le~~~s~~~~~~~ 107 (625)
T KOG2204|consen 28 SSFQETLCLGANFRLPSSSPLLLIDLLDSSYLCTPLVQDVVNRIIFDFPAPPLAMEVIDAPDITTRVLEGLLSAYEEEMD 107 (625)
T ss_pred HHHHHHhhhhheeeCCCCCchhheeeccchhhhhhHHHhccccccccCCCcccccccccccccchhhhhhhHHHhhHHHH
Confidence 35778899999999999999999988854 4777998772 1111 122344444444
Q ss_pred H-HHHHHHHhhcC----CCCccCccccccccCC----------CCCCCC-----CCCCh----hHHHHHHHHHHHHHHHH
Q 008341 68 Q-LRNLLEEIKNN----PANVIGKIDHIKQAKQ----------PPGNKA-----FAEDP----IDIQRKQKVKDAMIHAW 123 (569)
Q Consensus 68 ~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~~~-----~~~~~----~~~~rr~~Vk~af~haw 123 (569)
+ |++..+.+... ..+.++....|-|..+ ||.+.. ...++ ...+||++||+||+|||
T Consensus 108 r~L~~ak~~~~~~~~~~~~~n~~~~~k~~~~s~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~rrekVkemm~hAw 187 (625)
T KOG2204|consen 108 RRLNKAKEVLPFILRSFDTPNRIPIKKPFQKSDLRNRFPDRTVPSGQLTPALAFESLDPEDRNKYRERREKVKEMMKHAW 187 (625)
T ss_pred HHHHhhhhccccccccccCcccccccccccchhhhhcCCCcccCCccCCccccccCcCccchhHHHHHHHHHHHHHHHHH
Confidence 3 33322111110 0011222111211111 111100 11233 34489999999999999
Q ss_pred HHhHhhccCchhhhH--------------------------HHHhcCCCCCChhHHHHHHHHHHhhcCCC-CCccccccc
Q 008341 124 SSYEKYAWGQDELQL--------------------------LYSMCLFWRISDYSFSSEFMWIANSLDFN-KSYDASVFE 176 (569)
Q Consensus 124 ~~Y~~~Awg~DEL~P--------------------------L~IMgl~~~~~~eEF~~A~~~V~~~ldF~-~~~~vsvFE 176 (569)
++|++||||+|||+| |||||| ++||+||++||+.+++|+ ++.++||||
T Consensus 188 ~~Yk~yawg~neLrp~sk~g~s~~ifG~~~~GATIvDslDTlyim~l-----~~e~qEar~wi~~~~~~~~v~~~~SvFE 262 (625)
T KOG2204|consen 188 NNYKKYAWGKNELRPSSKQGHSSSIFGAHLKGATIVDSLDTLYIMGL-----KEEFQEARDWIAYNLDFKTVPIELSVFE 262 (625)
T ss_pred HhhhhhcccccccCccccCCccccccccCcCCchHHHhhhHHHHHHH-----HHHHHHHHHHHHhhcccccccchhheee
Confidence 999999999999999 999999 999999999999999998 899999999
Q ss_pred hhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCC-CCccccccccchhhHHHH
Q 008341 177 TTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTG-GESILADSGTEQLELIAL 255 (569)
Q Consensus 177 ttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~-~~s~lAe~GSl~LEF~~L 255 (569)
||||++|||||||.||||+++++||++|||+|||||+||||||++.||.++|..++.+|.. |.|++||.||++|||.+|
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~L 342 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYL 342 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHh
Confidence 9999999999999999999999999999999999999999999999999999999999984 588999999999999999
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHH
Q 008341 256 SQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWE 335 (569)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~ 335 (569)
|++||||+|.+++++|.+.|.+..++.||+|++|||++|.|.+.+.++||.+|||||||+|.|+++|++| ..+++||.
T Consensus 343 S~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~kTd--~eak~my~ 420 (625)
T KOG2204|consen 343 SKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDKTD--CEAKGMYE 420 (625)
T ss_pred hhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCCcc--hHHHHhHH
Confidence 9999999999999999999999988999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhc-cccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCC-CchHHHHHHHHHHHHHHHhhccCC
Q 008341 336 TSMKGLLSLV-RRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPG-DSEKFLSLAEELAWTCYNFYQSTP 413 (569)
Q Consensus 336 ~a~~~i~~ll-~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~-~~~~~l~lA~~L~~tC~~~y~~t~ 413 (569)
+||.+|.+++ +++.+++++|++++++|++.++|+||+||.|||+|||+...+.+ ...+++++|.++++||+++|.+++
T Consensus 421 ~am~Ai~~~li~~S~~s~ltyi~e~~~g~lehKm~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~ 500 (625)
T KOG2204|consen 421 DAMIAIEKYLIFKSDGSGLTYISEWNGGGLEHKMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTT 500 (625)
T ss_pred HHHHHHHhhheeccCCCCeEEEEecCCCchhhhhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccc
Confidence 9999999954 56667799999999999999999999999999999999876543 678999999999999999999999
Q ss_pred CCccceeEeecCCCccc---cccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcccCcCccccccCCC--C
Q 008341 414 TKLAGENYFFRDGQDMS---VGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVNT--G 488 (569)
Q Consensus 414 tGl~PE~~~f~~~~~~~---~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~~~Gya~l~dV~~--~ 488 (569)
|+++||.|.|+.+.... -.+++|+||||+|||+|||||+|||++||+|||+.||++||+||+..||+||+||.. +
T Consensus 501 T~lgpesf~fn~~~ea~~~r~~EsyyILrpEviEs~fYlwRlT~d~kyR~wgweavqalek~cr~~~G~~glkdvY~~~~ 580 (625)
T KOG2204|consen 501 TKLGPESFWFNHGVEAFAVRKVESYYILRPEVIESYFYLWRLTGDQKYRSWGWEAVQALEKYCRVAKGYSGLKDVYESGP 580 (625)
T ss_pred cccChhhhcccCccchhhhhcccceeecCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhcccccchhhhhHhhhCCC
Confidence 99999999999887633 378899999999999999999999999999999999999999999999999999976 4
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCccccc
Q 008341 489 DKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKIV 533 (569)
Q Consensus 489 ~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i~ 533 (569)
..+|.|+|||||||||||||||||+|++|||+||||||||||||.
T Consensus 581 ~~ddvqqSFflAEtLKYlyLlFSdddllsLD~wVFNteAHplpi~ 625 (625)
T KOG2204|consen 581 KVDDVQQSFFLAETLKYLYLLFSDDDLLSLDKWVFNTEAHPLPIK 625 (625)
T ss_pred cccchHHHHHHHHHHHHHhheecCCCcccHHHhhhccCCcccCCC
Confidence 569999999999999999999999999999999999999999973
No 4
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=100.00 E-value=6.4e-129 Score=1052.97 Aligned_cols=403 Identities=53% Similarity=0.896 Sum_probs=352.6
Q ss_pred HHHHHHHHhHhhccCchhhhH----------------------HHHhcCCCCCChhHHHHHHHHHHhhcCCCCCc-cccc
Q 008341 118 AMIHAWSSYEKYAWGQDELQL----------------------LYSMCLFWRISDYSFSSEFMWIANSLDFNKSY-DASV 174 (569)
Q Consensus 118 af~haw~~Y~~~Awg~DEL~P----------------------L~IMgl~~~~~~eEF~~A~~~V~~~ldF~~~~-~vsv 174 (569)
||+|||++|++||||||||+| |+|||+ ++||++|++||.++++|+++. .|||
T Consensus 1 ~f~~a~~~Y~~~A~g~Del~P~s~~~~~~~~g~~~TlvDSLdTL~imgl-----~~ef~~a~~~v~~~~~f~~~~~~vs~ 75 (452)
T PF01532_consen 1 MFRHAWNGYKKYAWGHDELRPLSGSGSDSFGGWGATLVDSLDTLYIMGL-----KDEFNEAVDWVSNNLDFDQDDSTVSV 75 (452)
T ss_dssp HHHHHHHHHHHHTTTSSEEETTTTEEE-SSTTS-HHHHHHHHHHHHHTH-----HHHHHHHHHHHHHC--TTSSSSEEEH
T ss_pred ChhHHHHHHHHhcCCccccccccCCCCCccccccceeeeeccceeecCC-----HHHHHHHHHHHHhhcCcCccceeech
Confidence 799999999999999999999 999999 999999999999889999988 7999
Q ss_pred cchhhhhccccceeeccC--CChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhH
Q 008341 175 FETTIRVVGGLLSAYDLS--GDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL 252 (569)
Q Consensus 175 FEttIR~LGGLLSAY~LS--gd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF 252 (569)
||||||+||||||||+|| +|++||+||+||||+|+||||||+|||+++||++++... +|+++.+++||+||++|||
T Consensus 76 fEt~iR~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~--~~~~~~~~la~~gs~~lEf 153 (452)
T PF01532_consen 76 FETTIRVLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKN--RWPGGESSLAEAGSLQLEF 153 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEE--TTCCGEEEHHHHCSSHHHH
T ss_pred HHhhhHhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCC--CCCCCcccccccccceech
Confidence 999999999999999999 999999999999999999999999999999999775543 5666678999999999999
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHhhc--C-CCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcch
Q 008341 253 IALSQRTGDPKYRQKAEKVIVELNKT--F-PADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKP 329 (569)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~~~--~-~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~ 329 (569)
++||++|||+||+++|+++++.|++. . +.+||+|+.||+.+|+|++..+++||++|||||||||+|+|+|+.+ +.
T Consensus 154 ~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d--~~ 231 (452)
T PF01532_consen 154 TRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTD--EQ 231 (452)
T ss_dssp HHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTT--HH
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccc--hH
Confidence 99999999999999999999999993 3 4799999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHHHhcccc--CCC--CCeeeeccC---CCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHH
Q 008341 330 YRDMWETSMKGLLSLVRRS--TPS--SFTYICEKN---GDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELA 402 (569)
Q Consensus 330 ~~~my~~a~~~i~~ll~~~--~~~--~~~~v~~~~---g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~ 402 (569)
|++||++|+++|+++|... .|+ ++.|+++.. ++...++|+||+||+|||++||++.++ .++++++|++|+
T Consensus 232 ~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~---~~~~~~~A~~l~ 308 (452)
T PF01532_consen 232 YRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFN---DEGDLELAEELT 308 (452)
T ss_dssp HHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccC---chhHHHHHHHHH
Confidence 9999999999999976443 455 789999986 567889999999999999999998874 489999999999
Q ss_pred HHHHHhhccCCCCccceeEeecCC------------CccccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 008341 403 WTCYNFYQSTPTKLAGENYFFRDG------------QDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFE 470 (569)
Q Consensus 403 ~tC~~~y~~t~tGl~PE~~~f~~~------------~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~ 470 (569)
++|+++|+.+|||++||++.|... ..+.+.+++|+||||+|||+|||||+||||+||||||+||++|+
T Consensus 309 ~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~ 388 (452)
T PF01532_consen 309 ETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIE 388 (452)
T ss_dssp HHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHH
Confidence 999999999999999999999962 22346889999999999999999999999999999999999999
Q ss_pred HHcccCcCccccccCC--CCCCCCCcchHHHHHHHHHHHHhcCCCCccCCCCeeeccCCCcccc
Q 008341 471 KNSRIESGYVGLKDVN--TGDKDNMMQSFFLAETLKYLYLLFSPTTVISLDEWVFNTEAHPLKI 532 (569)
Q Consensus 471 k~~r~~~Gya~l~dV~--~~~~~D~meSFflaETLKYLYLLFsd~~~isLd~~VFnTEaHPl~i 532 (569)
|+||++|||++|+||+ ++..+|+|||||||||||||||||||++.++||+||||||||||||
T Consensus 389 k~~r~~~G~a~i~dv~~~~~~~~D~meSf~laETlKYlYLlFsd~~~~~ld~~VfnTeaHpl~i 452 (452)
T PF01532_consen 389 KYCRTECGYAGIKDVTSDPPQKDDRMESFFLAETLKYLYLLFSDPDVISLDEYVFNTEAHPLRI 452 (452)
T ss_dssp HHTEETTEE--BSETTSSSSCBBS-B-CHHHHTHHHHHHHHTSSTTTTSTTSEEE-TTS-EEE-
T ss_pred HhcccceehhhhcccCcCCcccCCCccceehHhhhHHHHhhcCCcccCCCCCEEECCCCCccCC
Confidence 9999999999999998 5667999999999999999999999999999999999999999997
No 5
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-110 Score=884.90 Aligned_cols=401 Identities=32% Similarity=0.474 Sum_probs=378.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccCchhhhH---------------------------HHHhcCCCCCChhHHHHHHHH
Q 008341 107 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL---------------------------LYSMCLFWRISDYSFSSEFMW 159 (569)
Q Consensus 107 ~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P---------------------------L~IMgl~~~~~~eEF~~A~~~ 159 (569)
...+.|++||+||.|||++|++||+|+|||+| |.|||. .+||++||+|
T Consensus 29 ~~~~~Re~vr~MFyhayDnYm~hAFP~DEL~PltC~g~~~~~~D~~G~ysLtLIDaLdTLailGn-----~~eF~raV~l 103 (622)
T KOG2429|consen 29 KKKQYREEVREMFYHAYDNYMEHAFPYDELKPLTCVGRGPGVNDTLGSYSLTLIDALDTLAILGN-----RTEFQRAVRL 103 (622)
T ss_pred cHHHHHHHHHHHHHHhhhhHhhccCCccccCcceecCCCCCccccccccchhhHHHhhHHHHhCC-----hHHHHHHHHH
Confidence 44899999999999999999999999999999 899999 9999999999
Q ss_pred HHhhcCCCCCccccccchhhhhccccceeeccCC------------ChhHHHHHHHHHHHHhhcccCCCCCCcceeecCC
Q 008341 160 IANSLDFNKSYDASVFETTIRVVGGLLSAYDLSG------------DKVFLEKARDIADRLLPAWNTRTGIPYNVINLAH 227 (569)
Q Consensus 160 V~~~ldF~~~~~vsvFEttIR~LGGLLSAY~LSg------------d~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~ 227 (569)
|.++++|++|.+||||||||||||||||||.++. |..||..|+|+|+||||||+|||||||++||+++
T Consensus 104 v~~~~~Fd~d~~VqVFEttIRVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~ 183 (622)
T KOG2429|consen 104 VIETVSFDIDSTVQVFETTIRVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLLPAFETPTGIPYGRVNLKY 183 (622)
T ss_pred HHhhCCcccCCeeEEEEEehhhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhcccccCCCCCCcceeehhc
Confidence 9999999999999999999999999999999993 5679999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccC
Q 008341 228 GNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMG 307 (569)
Q Consensus 228 g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~ 307 (569)
|+..++. .++|+|.+||+.|||+.||+|||||+|++.|+++.+.+|+.++..||+|++||+.||+|+....++||+.
T Consensus 184 GV~~~Et---~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgi 260 (622)
T KOG2429|consen 184 GVDKGET---TETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGI 260 (622)
T ss_pred CCCCCCC---cceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccch
Confidence 9998876 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCC
Q 008341 308 DSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYG 387 (569)
Q Consensus 308 DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~ 387 (569)
|||||||+|.|||+|+++ +.+||.+|.++|++++++. +.+..|.+.+|....+++++|++||||+++|.|
T Consensus 261 DSfyEYllK~yILfgd~e----~lemf~ea~~ai~~y~r~~--~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaG---- 330 (622)
T KOG2429|consen 261 DSFYEYLLKGYILFGDPE----LLEMFNEAYEAIQKYTRKG--PWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAG---- 330 (622)
T ss_pred HHHHHHHHHHheecCCHH----HHHHHHHHHHHHHHHhhcC--CeEEEEecCCCceehHHHhhHHhhccchhhhhc----
Confidence 999999999999999866 8899999999999999874 478889999998889999999999999999987
Q ss_pred CCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHH
Q 008341 388 PGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQ 467 (569)
Q Consensus 388 ~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ 467 (569)
+++.|...+-..+.+|+. .|..||.|++..+.. .....+|+||||.|||.|||||+|+||.|++.|-+|.+
T Consensus 331 ------Dvd~A~~~h~~y~~vwkk--yG~lPEryN~~~~~~-~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~ 401 (622)
T KOG2429|consen 331 ------DVDDAIRTHLMYFSVWKK--YGFLPERYNLATQEP-PPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLK 401 (622)
T ss_pred ------chHHHHHHHHHHHHHHHH--cCCCcccccccCCCC-CCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456677788888999985 799999999998654 66788999999999999999999999999999999999
Q ss_pred HHHHHcccCcCccccccCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcc--CCC-CeeeccCCCcccccc
Q 008341 468 AFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVI--SLD-EWVFNTEAHPLKIVT 534 (569)
Q Consensus 468 ai~k~~r~~~Gya~l~dV~~~~~~D~meSFflaETLKYLYLLFsd~~~i--sLd-~~VFnTEaHPl~i~~ 534 (569)
+||+++|++||||+|+||.+...+|+|||||||||+|||||||+|++.| +-. .++|+|||||++|.+
T Consensus 402 sLe~~~k~~CGfAti~nV~~~~ledrMESFFLaET~KYLYLLFD~~n~ih~~g~~~~ifsTEgh~~~v~~ 471 (622)
T KOG2429|consen 402 SLEKYTKVKCGFATIRNVITHSLEDRMESFFLAETLKYLYLLFDDDNPIHNSGSDSVIFSTEGHLFPVTQ 471 (622)
T ss_pred HHHHhccCCccceeeeehhhcchHHHHHHHHHHHHHhHHheeecCCchhhccCCceeEEeeCCcceeecc
Confidence 9999999999999999999999999999999999999999999999998 333 489999999999965
No 6
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-85 Score=665.77 Aligned_cols=401 Identities=30% Similarity=0.472 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccCchhhhH----------------------------------HHHhcCCCCCChhHH
Q 008341 108 DIQRKQKVKDAMIHAWSSYEKYAWGQDELQL----------------------------------LYSMCLFWRISDYSF 153 (569)
Q Consensus 108 ~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P----------------------------------L~IMgl~~~~~~eEF 153 (569)
-++..+++-+||.|+|.+||.||+|.|||.| |.+|+. .+||
T Consensus 6 kkkl~~e~~dmf~h~y~nyme~a~padelmplsckgrirg~~psrgdvddalgkfsltlidsldtlvvln~-----~~ef 80 (587)
T KOG2430|consen 6 KKKLGKEALDMFDHAYGNYMEHAFPADELMPLSCKGRIRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNE-----LDEF 80 (587)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCchhhcccccccceecCcCCCCCchhhhhcceeeeeeccccceeeccc-----hHHH
Confidence 3455688999999999999999999999999 889999 9999
Q ss_pred HHHHHHHHhhcCCCCCccccccchhhhhccccceeeccCC-------------ChhHHHHHHHHHHHHhhcccCCCCCCc
Q 008341 154 SSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSG-------------DKVFLEKARDIADRLLPAWNTRTGIPY 220 (569)
Q Consensus 154 ~~A~~~V~~~ldF~~~~~vsvFEttIR~LGGLLSAY~LSg-------------d~~lL~KA~eLadrLlpAFdTptGiP~ 220 (569)
++|++-|.+.++|+.|.-||||||+||+|||||+||.|.. |..||.+|+++|.+|||||+|.+|+|+
T Consensus 81 e~ai~~vik~v~~dnd~vvsvfetnirvlggli~~h~la~llk~e~~e~lq~y~dellkmakelg~kllpafnttsglp~ 160 (587)
T KOG2430|consen 81 EDAIDKVIKDVNFDNDHVVSVFETNIRVLGGLIGAHSLAELLKEEKGERLQTYDDELLKMAKELGNKLLPAFNTTSGLPF 160 (587)
T ss_pred HHHHHHHHHhccCCCCeEEEEeecccHhhhccchHHHHHHHHHHhccchhhhhhHHHHHHHHHHhhhhccccccCCCCCC
Confidence 9999999999999999999999999999999999998874 778999999999999999999999999
Q ss_pred ceeecCCCCCCCCCCC--CCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc-CCCCCCcceeecCCCCCCC
Q 008341 221 NVINLAHGNPHNPSWT--GGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT-FPADGLLPIYISPDRGTPS 297 (569)
Q Consensus 221 ~~iNl~~g~~~~~~~~--~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~-~~~~GL~p~~id~~tg~~~ 297 (569)
++||++.|.-.++.-. ..++|+|.+||+.|||..||++||+|.|+++|+++++.||.. .....|++..||..+|.|+
T Consensus 161 ~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~ 240 (587)
T KOG2430|consen 161 PRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWT 240 (587)
T ss_pred cccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcce
Confidence 9999999987544332 357899999999999999999999999999999999999984 4567899999999999999
Q ss_pred CCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCC-cccccccccccccc
Q 008341 298 YSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGD-SLIDKMDELACFAP 376 (569)
Q Consensus 298 ~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~-~~~~~m~hLsCF~p 376 (569)
....++||+.|||||||||.|+|.|+.+ |.+.|.+-+++|++++.+. +-+.-|...... ..+..||.|-+|+|
T Consensus 241 rkdsgigagidsyyey~lkayillgdds----fldrfn~hydai~ryi~k~--pi~ldvhihkp~l~ar~~mdallaf~p 314 (587)
T KOG2430|consen 241 RKDSGIGAGIDSYYEYLLKAYILLGDDS----FLDRFNKHYDAIKRYINKG--PIFLDVHIHKPMLAARGFMDALLAFFP 314 (587)
T ss_pred ecccCcCcchHHHHHHHHHHhheeccHH----HHHHHHHHHHHHHHHhcCC--CeEEEEecccchhhHhhHHHHHHHhCc
Confidence 9999999999999999999999999754 7788888888998877543 223333332221 23568999999999
Q ss_pred hhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcCcc
Q 008341 377 GMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNK 456 (569)
Q Consensus 377 GmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~ 456 (569)
|+++|-+. +.-|.+..+..|+.-+. ....||.|.-+ +.+-=...++|||.+||.|+|||+||||
T Consensus 315 glqvlkgd----------ik~aie~heml~qvikk--h~flpeaft~d----f~vhwaehpirpefaestyflykat~dp 378 (587)
T KOG2430|consen 315 GLQVLKGD----------IKEAIEMHEMLFQVIKK--HKFLPEAFTHD----FQVHWAEHPIRPEFAESTYFLYKATGDP 378 (587)
T ss_pred chhhhccc----------cHHHHHHHHHHHHHHHH--cccChHhhccc----ceeecccCCCChhhhhhheeeecccCCc
Confidence 99999763 33356677777777664 68899987633 2333345799999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcccCcCccccccCCCCCCCCCcchHHHHHHHHHHHHhcCCCCcc--CCCCeeeccCCCcccccc
Q 008341 457 TYKEWGWNIFQAFEKNSRIESGYVGLKDVNTGDKDNMMQSFFLAETLKYLYLLFSPTTVI--SLDEWVFNTEAHPLKIVT 534 (569)
Q Consensus 457 ~yre~gW~if~ai~k~~r~~~Gya~l~dV~~~~~~D~meSFflaETLKYLYLLFsd~~~i--sLd~~VFnTEaHPl~i~~ 534 (569)
.|.+.|-.+..+|+|+.|++|||++++||+++..+|+|+||||||++|||||||.|+..+ +.|+|||+||||.||.+-
T Consensus 379 ~yl~v~k~iidninkyakvpcgfaalkdirt~~~ed~mdsf~lae~fkylylifad~ediifd~d~yi~tteah~lpl~i 458 (587)
T KOG2430|consen 379 HYLEVAKQIIDNINKYAKVPCGFAALKDIRTGSHEDQMDSFFLAEMFKYLYLIFADKEDIIFDIDDYIFTTEAHFLPLSI 458 (587)
T ss_pred hHHHHHHHHHHHHhhheeCCchHHHHHHHhhcchHHHHHHHHHHHHHHHHHheecCHHHceechhHheEeecceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999998544 889999999999999874
Q ss_pred C
Q 008341 535 Q 535 (569)
Q Consensus 535 ~ 535 (569)
+
T Consensus 459 ~ 459 (587)
T KOG2430|consen 459 G 459 (587)
T ss_pred c
Confidence 4
No 7
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.50 E-value=1.2e-05 Score=85.29 Aligned_cols=275 Identities=16% Similarity=0.092 Sum_probs=162.6
Q ss_pred hhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCC-CCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHH
Q 008341 177 TTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRT-GIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIAL 255 (569)
Q Consensus 177 ttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTpt-GiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~L 255 (569)
..-|.|-+|-.||.+++++..|+.|+...+.|..-+-.+. |-=+..++ ..|.+..+. ..+=+.+-+..=+..+
T Consensus 54 ~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~-~~g~~~~~~-----~~l~~~a~~l~ala~~ 127 (384)
T cd00249 54 LQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALD-QDGRPVDAT-----KDLYSHAFALLAAAQA 127 (384)
T ss_pred EecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEc-CCCCCcccc-----cchHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999664443 42233332 234433221 1122333444557889
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcC-CCCCCcceeecCCCCCCCCCeeeecccCch--HHHHHHHHHHhcCCCCCcchHHH
Q 008341 256 SQRTGDPKYRQKAEKVIVELNKTF-PADGLLPIYISPDRGTPSYSTITFGAMGDS--FYEYLLKVWIQGNKTSAVKPYRD 332 (569)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~-~~~GL~p~~id~~tg~~~~~~~t~Ga~~DS--yYEYLLK~~iL~g~~~~~~~~~~ 332 (569)
.+.|||+.|.+.|+++++.+.+.. +.+|.+-...+++. ... -+ ..+- ..|-|+..+-++|+.+ |.+
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~-~~~-----~~-~~~~~h~~~all~l~~~tgd~~----~~~ 196 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT-PPY-----RG-SNPHMHLLEAMLAAYEATGEQK----YLD 196 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC-CCC-----CC-CChhHHHHHHHHHHHHHhCCHH----HHH
Confidence 999999999999999999999854 33454433333331 111 11 2222 2588999999998644 666
Q ss_pred HHHHHHHHHHHhccccCCCCCeeeeccCCCcccc-------cccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 008341 333 MWETSMKGLLSLVRRSTPSSFTYICEKNGDSLID-------KMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTC 405 (569)
Q Consensus 333 my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~-------~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC 405 (569)
+-++.++.+.+.+.......+ +-....+....+ .-.|..=.+=+++.|.... ..+++++.|+++.+.+
T Consensus 197 ~A~~l~~~~~~~~~~~~~G~~-~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~----~~~~~~~~a~~~~~~~ 271 (384)
T cd00249 197 RADEIADLILDRFIDAESGVV-REHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRS----GQAWLIEKARRLFDLA 271 (384)
T ss_pred HHHHHHHHHHHHhcCcccCeE-EEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHH
Confidence 666666666665443222222 211111111000 0111110111333333322 2467899998888876
Q ss_pred HHhhccCCCCccceeEeecCCCccccccCCCCC--chhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcccC
Q 008341 406 YNFYQSTPTKLAGENYFFRDGQDMSVGTSWNIL--RPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE 476 (569)
Q Consensus 406 ~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~L--RPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~~ 476 (569)
.+......+|...+. +.+... .+....-.. --|.+..+..+|++|||++|.+++-+++..+.++...+
T Consensus 272 ~~~~~d~~~G~~~~~--~~~~~~-~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~ 341 (384)
T cd00249 272 LALGWDPERGGLYYS--FLDDGG-LLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDP 341 (384)
T ss_pred HHhCcCccCCCEEEe--eECCCC-CcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 654433334433321 222221 111122222 33888889999999999999999999999999888754
No 8
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.26 E-value=7.9e-06 Score=89.69 Aligned_cols=335 Identities=20% Similarity=0.222 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccCchhhhH-----HHHhcCCCC--CChhHHHHHHHHHHhhcCCCCC----ccccc
Q 008341 106 PIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL-----LYSMCLFWR--ISDYSFSSEFMWIANSLDFNKS----YDASV 174 (569)
Q Consensus 106 ~~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P-----L~IMgl~~~--~~~eEF~~A~~~V~~~ldF~~~----~~vsv 174 (569)
+.+..|..+++..|...|..-. -|.+.--.+| +.|-.+ .. .-+..+++.++-++ +||-.. .....
T Consensus 12 ~p~~lr~~~~~~~~l~~~~~~~-Lc~~a~f~~ps~~~~~~~~~~-~~~~~~~~~v~d~~n~~~--~~~~~~~~~~~~~~~ 87 (625)
T KOG2204|consen 12 PPDVLRLKQIFLIFLGSSFQET-LCLGANFRLPSSSPLLLIDLL-DSSYLCTPLVQDVVNRII--FDFPAPPLAMEVIDA 87 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-hhhhheeeCCCCCchhheeec-cchhhhhhHHHhcccccc--ccCCCcccccccccc
Confidence 3577888889999888887543 3555544444 222222 00 00122333333222 344432 12456
Q ss_pred cchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHH
Q 008341 175 FETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIA 254 (569)
Q Consensus 175 FEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~ 254 (569)
.+.+-|+|-+++|+|...-++. |+||++.+++++..|++|+.+|....-.+... .++++.+.......++ .|-|..
T Consensus 88 p~~~~~~le~~~s~~~~~~~r~-L~~ak~~~~~~~~~~~~~n~~~~~k~~~~s~l--~~~~~~~~~~~~~~~~-~~~~~~ 163 (625)
T KOG2204|consen 88 PDITTRVLEGLLSAYEEEMDRR-LNKAKEVLPFILRSFDTPNRIPIKKPFQKSDL--RNRFPDRTVPSGQLTP-ALAFES 163 (625)
T ss_pred cccchhhhhhhHHHhhHHHHHH-HHhhhhccccccccccCcccccccccccchhh--hhcCCCcccCCccCCc-cccccC
Confidence 8889999999999999999988 99999999999999999999987543332111 1111211222223333 677888
Q ss_pred HHHHhCCchHHHHHHHH---HHHHhhcCCCCCCcceeecCCCCCCCCCeeeecc--cCchHHHHHHHHHHhcCCCCCcch
Q 008341 255 LSQRTGDPKYRQKAEKV---IVELNKTFPADGLLPIYISPDRGTPSYSTITFGA--MGDSFYEYLLKVWIQGNKTSAVKP 329 (569)
Q Consensus 255 LS~lTGd~kY~~~a~~i---~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga--~~DSyYEYLLK~~iL~g~~~~~~~ 329 (569)
+++.+. .+|+++.++| |++-|+.......-++-++|.+++.. +...||+ .|-+--.-|=-.||+.=
T Consensus 164 ~d~~~~-~~~~~rrekVkemm~hAw~~Yk~yawg~neLrp~sk~g~-s~~ifG~~~~GATIvDslDTlyim~l------- 234 (625)
T KOG2204|consen 164 LDPEDR-NKYRERREKVKEMMKHAWNNYKKYAWGKNELRPSSKQGH-SSSIFGAHLKGATIVDSLDTLYIMGL------- 234 (625)
T ss_pred cCccch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccCccccCCc-cccccccCcCCchHHHhhhHHHHHHH-------
Confidence 998887 8888776665 55666677778888999999998876 3445553 34333333333344432
Q ss_pred HHHHHHHHHHHHHHhcccc-CCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHh
Q 008341 330 YRDMWETSMKGLLSLVRRS-TPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNF 408 (569)
Q Consensus 330 ~~~my~~a~~~i~~ll~~~-~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~ 408 (569)
.+-|+++-+=|...+-.. .+..+ ..++-=--|.+|++.+=+-.. .+-+++-|.++.+----.
T Consensus 235 -~~e~qEar~wi~~~~~~~~v~~~~------------SvFE~NirF~GGllsay~lsg----e~~f~~kA~~igdkLLpA 297 (625)
T KOG2204|consen 235 -KEEFQEARDWIAYNLDFKTVPIEL------------SVFETNIRFVGGLLSAYALSG----EEMFLEKAPEIGDKLLPA 297 (625)
T ss_pred -HHHHHHHHHHHHhhcccccccchh------------heeeeeeeeehhhHHHhhhcc----cHHHHHhhHHHHHHhhhc
Confidence 233555555555422211 11111 111111358899988755332 334455555555444444
Q ss_pred hccCCCCccceeEeecCCCccc---cccCCCCCch---hHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcccC
Q 008341 409 YQSTPTKLAGENYFFRDGQDMS---VGTSWNILRP---ETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE 476 (569)
Q Consensus 409 y~~t~tGl~PE~~~f~~~~~~~---~~~~~y~LRP---E~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~~ 476 (569)
+ .||||+.=..++...|..-+ .....-||-= .-.| .-||=++||||.|++..-.|=+.+++.-+-.
T Consensus 298 f-ntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhle-f~~LS~ltg~P~~~ekv~~IRk~l~k~ekP~ 369 (625)
T KOG2204|consen 298 F-NTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLE-FSYLSKLTGNPTFAEKVVKIRKVLNKSEKPH 369 (625)
T ss_pred c-cCCCCCchhhhccccCccCCcccccCcchHhhhcCceeee-hHHhhhccCCchHHHHHHHHHHHHHhhcCCC
Confidence 4 47999988777776653200 0111113200 0011 3588899999999999999999999988744
No 9
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.15 E-value=0.00079 Score=71.48 Aligned_cols=247 Identities=15% Similarity=0.123 Sum_probs=149.1
Q ss_pred HHHHHHhh-cccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcC-C
Q 008341 203 DIADRLLP-AWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTF-P 280 (569)
Q Consensus 203 eLadrLlp-AFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~-~ 280 (569)
++.+.... ++|.++|--+..++. .|++.+.. ..+-..+-+..=|....+++|++.|.+.|+++++.|.+.. .
T Consensus 18 ~~~~fw~~~~~d~~~gg~~~~l~~-~g~~~~~~-----k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d 91 (384)
T cd00249 18 DLLPFWLEAGLDREAGGFFECLDR-DGQPFDTD-----RRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRD 91 (384)
T ss_pred HHHHHHHhcCCCCCCCCeEEEECC-CCCCCCCC-----CeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcC
Confidence 34444444 567777765555654 46554321 2233345566778889999999999999999999999943 3
Q ss_pred CC-CCcceeecCCCCCCCCCeeeecccCchHHHHHH------HHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCC
Q 008341 281 AD-GLLPIYISPDRGTPSYSTITFGAMGDSFYEYLL------KVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSF 353 (569)
Q Consensus 281 ~~-GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLL------K~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~ 353 (569)
.. |-+-..++++ |++... +-..|+|.. ..|..+|+.+ +.+.=++.++-+.+++. ...+++
T Consensus 92 ~~~Gg~~~~~~~~-g~~~~~-------~~~l~~~a~~l~ala~~~~at~d~~----~l~~A~~~~~~l~~~~~-~~~g~~ 158 (384)
T cd00249 92 PDHGGWYFALDQD-GRPVDA-------TKDLYSHAFALLAAAQAAKVGGDPE----ARALAEETIDLLERRFW-EDHPGA 158 (384)
T ss_pred CCCCCEEEEEcCC-CCCccc-------ccchHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHhc-cCCCcc
Confidence 33 6665666543 343321 113555554 7888887654 66666666666666554 222222
Q ss_pred eeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCcccccc
Q 008341 354 TYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGT 433 (569)
Q Consensus 354 ~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~ 433 (569)
|.....+....+.+..-...+-+++.|.... ..+++++.|+++++.+.......+.|..+|.+. .+... ...+
T Consensus 159 -~~~~~~~~~~~~~~~~~~h~~~all~l~~~t----gd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~-~~~~~-~~~~ 231 (384)
T cd00249 159 -FDEADPGTPPYRGSNPHMHLLEAMLAAYEAT----GEQKYLDRADEIADLILDRFIDAESGVVREHFD-EDWNP-YNGD 231 (384)
T ss_pred -cCCCCCCCCCCCCCChhHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcCcccCeEEEEEC-CCCCC-CcCc
Confidence 2111111111111222221122566665432 246899999999999998777777787776653 11111 1111
Q ss_pred CCCCCch----hHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHccc
Q 008341 434 SWNILRP----ETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 475 (569)
Q Consensus 434 ~~y~LRP----E~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~ 475 (569)
.....-| |.+-.+.-++++|||+.|++++-++++.+.++...
T Consensus 232 ~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d 277 (384)
T cd00249 232 KGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWD 277 (384)
T ss_pred CCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcC
Confidence 1122224 67776777899999999999999999999998853
No 10
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00016 Score=81.88 Aligned_cols=171 Identities=19% Similarity=0.285 Sum_probs=107.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhHhhccCchhhhH----HHHhcCC---CCCChhHH----HHHHHHHHhhcCCC------
Q 008341 105 DPIDIQRKQKVKDAMIHAWSSYEKYAWGQDELQL----LYSMCLF---WRISDYSF----SSEFMWIANSLDFN------ 167 (569)
Q Consensus 105 ~~~~~~rr~~Vk~af~haw~~Y~~~Awg~DEL~P----L~IMgl~---~~~~~eEF----~~A~~~V~~~ldF~------ 167 (569)
.+...++.+.+|+..+.++.+=.+ ..=-|-+.. |.|-+|. ..+.+.|+ +++.++|.+++.=+
T Consensus 378 ~~~~~~~l~~~r~kL~~~R~~R~~-P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~ 456 (667)
T COG1331 378 IEEAEEKLERAREKLLAAREKRKQ-PSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRY 456 (667)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCC-CCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheee
Confidence 344667778888877776654221 111111111 4443331 11123333 33445777754323
Q ss_pred CCcc---ccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCC-CCCcceeecCCCCCCCCCCCCCCcccc
Q 008341 168 KSYD---ASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRT-GIPYNVINLAHGNPHNPSWTGGESILA 243 (569)
Q Consensus 168 ~~~~---vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTpt-GiP~~~iNl~~g~~~~~~~~~~~s~lA 243 (569)
.++. +-.-|--..++.|||+.|+.++|..+|++|++|+|.++..|-.+. | -|..-.........+.-..-..+.+
T Consensus 457 ~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d~~gG-f~~t~~~~~~l~ir~~~~~D~a~~S 535 (667)
T COG1331 457 RGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWDDEGG-FYDTPSDSEDLLIRPKEPTDGATPS 535 (667)
T ss_pred ecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcCCCCC-cccCCCcccccccCCCCCCCCCCCC
Confidence 2233 346788889999999999999999999999999999999887666 5 3322111111121121111233455
Q ss_pred ccccchhhHHHHHHHhCCchHHHHHHHHHHHHhh
Q 008341 244 DSGTEQLELIALSQRTGDPKYRQKAEKVIVELNK 277 (569)
Q Consensus 244 e~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~ 277 (569)
..+.+..-+.+||++|||.+|.++|+++.+++..
T Consensus 536 ~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~ 569 (667)
T COG1331 536 GNAVAAQALLRLSLLTGDARYLEAAEDILQAFAG 569 (667)
T ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Confidence 5667778899999999999999999999999887
No 11
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.41 E-value=0.0016 Score=73.13 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=122.4
Q ss_pred hhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHH
Q 008341 179 IRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQR 258 (569)
Q Consensus 179 IR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~l 258 (569)
-.++-||+.+|+++|++.+|+-|+.+||.+....+..+--|. +.....|.|.+.+-+..|-++
T Consensus 128 ~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~-----------------~~~~~~~~~~i~~~l~~LY~~ 190 (520)
T PF07944_consen 128 GKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPG-----------------QKMGYPEHGGINEALVRLYEI 190 (520)
T ss_pred hHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHh-----------------hcccccccchHHHHHHHHHHH
Confidence 457889999999999999999999999999443332111010 011123566677889999999
Q ss_pred hCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 008341 259 TGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSM 338 (569)
Q Consensus 259 TGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~ 338 (569)
|||++|.+.|++..+.-.... .++ -...|...+......+.-.-+.-..|+-+...|.++|+.+ |++.=....
T Consensus 191 Tgd~~yL~lA~~f~~~~~~~~--~~~-~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~----~~~a~~~~w 263 (520)
T PF07944_consen 191 TGDERYLDLAEYFVDQRGFDP--YDL-AYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEE----YLDAAENFW 263 (520)
T ss_pred hCCHHHHHHHHHHHHHhCCCC--Cch-hhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHH----HHHHHHHHH
Confidence 999999999998887543211 000 1111222222222233333334467788899999999765 333333333
Q ss_pred HHHHH-hccccCC--CC---CeeeeccCCCcc-cccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhcc
Q 008341 339 KGLLS-LVRRSTP--SS---FTYICEKNGDSL-IDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQS 411 (569)
Q Consensus 339 ~~i~~-ll~~~~~--~~---~~~v~~~~g~~~-~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~ 411 (569)
+.|.+ ++.-... +. --|.... .+ .......+|-.-+|+-+..+.+......++.+..+.. +|+.
T Consensus 264 ~~v~~~~~y~tGg~g~~~~~E~f~~~~---~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~------lyN~ 334 (520)
T PF07944_consen 264 DNVVRHHMYATGGIGSDHEGEHFGPPY---DLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERA------LYNA 334 (520)
T ss_pred HHHHhcCeeccCCCcCCCCCccCCCCC---CCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHH------Hhcc
Confidence 34332 3321111 11 1111111 11 1122256899999999888765433456777766554 4666
Q ss_pred CCCCccceeE
Q 008341 412 TPTKLAGENY 421 (569)
Q Consensus 412 t~tGl~PE~~ 421 (569)
.+.++.|+.-
T Consensus 335 ~la~~~~d~~ 344 (520)
T PF07944_consen 335 LLAGQSPDGG 344 (520)
T ss_pred cccccCCCCC
Confidence 6777877753
No 12
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.08 E-value=0.0084 Score=67.39 Aligned_cols=240 Identities=20% Similarity=0.158 Sum_probs=133.1
Q ss_pred HHHHhhcccCCCCCCcceeecCCCC--CCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCC
Q 008341 205 ADRLLPAWNTRTGIPYNVINLAHGN--PHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPAD 282 (569)
Q Consensus 205 adrLlpAFdTptGiP~~~iNl~~g~--~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~ 282 (569)
-|+|+..|-.-.|+|-..+....-. ..+..|.+ ..+|-..==..++...|+|++..++++++++.|.+....+
T Consensus 25 ~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~-----~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~d 99 (520)
T PF07944_consen 25 PDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRG-----HDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPD 99 (520)
T ss_pred HHHHhhhcCcccCCCCccccCCCCccCCCCCccCC-----CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCC
Confidence 4777877776666766544222111 11111211 2233333335677889999999999999999999977788
Q ss_pred CCcceeecCC----CCCCCC---CeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCee
Q 008341 283 GLLPIYISPD----RGTPSY---STITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTY 355 (569)
Q Consensus 283 GL~p~~id~~----tg~~~~---~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~ 355 (569)
|-+..+.+.. ...|.. ..+++| -.++=|+-.|..+|++. ..+.-.+..+-+.+.+..-.+.
T Consensus 100 GYl~~~~~~~~~~~~~~w~~~~he~Y~~~----~ll~gl~~~y~~tG~~~----~L~v~~k~ad~~~~~~~~~~~~---- 167 (520)
T PF07944_consen 100 GYLGTYPEERNFNPDDRWAPDMHELYCLG----KLLEGLIDYYEATGNER----ALDVATKLADWVYRRLSRLGPE---- 167 (520)
T ss_pred ceecccccccccccccCCCCCccceehHh----HHHHHHHHHHHHHCcHH----HHHHHHHHHHHHHHHhccCCHH----
Confidence 8777666544 223443 122222 13456778888889754 3333333333332211111110
Q ss_pred eeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCC
Q 008341 356 ICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSW 435 (569)
Q Consensus 356 v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~ 435 (569)
+...+..|=.+||..-=.+.+..-..++++++|+.+.+.. |..|. ....+++..+....
T Consensus 168 ----------~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~---------~~~~~--~~~~~~d~~~~~~a 226 (520)
T PF07944_consen 168 ----------PGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQR---------GFDPY--DLAYGQDHLPGRHA 226 (520)
T ss_pred ----------HhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------CCCCC--chhhcCccCCCccc
Confidence 1112344445655321111222234679999998877543 22330 00011111112222
Q ss_pred CCCchhHH------HHHHHHHhhcCcchHHHHHHHHHHHHHH-HcccCcCcccc
Q 008341 436 NILRPETV------ESLFYLWRLTGNKTYKEWGWNIFQAFEK-NSRIESGYVGL 482 (569)
Q Consensus 436 y~LRPE~I------ESlfyLyR~TGD~~yre~gW~if~ai~k-~~r~~~Gya~l 482 (569)
+-.-|.+| ++.--+|++|||+.|++.+..+|+.+.+ +.-+..|.++-
T Consensus 227 ~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~ 280 (520)
T PF07944_consen 227 NTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSD 280 (520)
T ss_pred cceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCC
Confidence 34444444 5788899999999999999999999975 44555677766
No 13
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.75 E-value=0.056 Score=57.06 Aligned_cols=241 Identities=17% Similarity=0.129 Sum_probs=136.9
Q ss_pred hhHHHHHHHhCCchHHHHHHHHHHHHhhcC--CCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCc
Q 008341 250 LELIALSQRTGDPKYRQKAEKVIVELNKTF--PADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAV 327 (569)
Q Consensus 250 LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~--~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~ 327 (569)
==|..+.+ +|+|.|.++|++.++.|.+.. +..|-+-..++... +... ......++|.=+-+=.+..+|+.+
T Consensus 28 ~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~--~~~~Y~~af~l~ala~~~~tg~~~-- 100 (346)
T PF07221_consen 28 YTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDP--QKDLYDQAFALLALAEARATGDPE-- 100 (346)
T ss_dssp HHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE----EEHHHHHHHHHHHHHHHCTT-TT--
T ss_pred HHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCcc--ccchHHHHHHHHHHHHHHHhCChh--
Confidence 34677778 899999999999999999954 34465555554222 2221 222233444434344466778765
Q ss_pred chHHHHHHHHHHHHHHhccccCCCCCeeeeccCC--Cc---ccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHH
Q 008341 328 KPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNG--DS---LIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELA 402 (569)
Q Consensus 328 ~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g--~~---~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~ 402 (569)
+.+.=.++++-|.+++....... |.....+ .. ..+.|.- +-++++|-... ..+.+++.|++|+
T Consensus 101 --~~~~A~~~~~~l~~~~~d~~~g~--~~~~~~~~~~~~r~~n~~mhl----~eA~l~l~~~~----~~~~~~~~a~~l~ 168 (346)
T PF07221_consen 101 --ALELAEQTLEFLERRFWDPEGGG--YRESFDPDWSPPRGQNPHMHL----LEAFLALYEAT----GDPRYLDRAEELL 168 (346)
T ss_dssp --HHHHHHHHHHHHHHHTEETTTTE--E--EETTTSSCBEEHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcccccCc--ceeccCCccccCCCCChhHHH----HHHHHHHHHhc----cCHHHHHHHHHHH
Confidence 45555677777777665432222 2222111 11 1223322 33345543321 1467999999999
Q ss_pred HHHHHhhccCCCCccceeEeecCCCccccccC-----CCCCch-hHHHHHHHHHhhc-----CcchHHHHHHHHHHHHHH
Q 008341 403 WTCYNFYQSTPTKLAGENYFFRDGQDMSVGTS-----WNILRP-ETVESLFYLWRLT-----GNKTYKEWGWNIFQAFEK 471 (569)
Q Consensus 403 ~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~-----~y~LRP-E~IESlfyLyR~T-----GD~~yre~gW~if~ai~k 471 (569)
+.|.+-.....+|..||.|+-+-. ....... .+..-| =.+|..++|.++- +++.|.+.+.+++....+
T Consensus 169 ~~~~~~f~~~~~g~~~E~f~~dw~-~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~ 247 (346)
T PF07221_consen 169 DLFLDRFADPESGALPEFFDRDWN-PLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALE 247 (346)
T ss_dssp HHHHTTCHHCCTTEETSEEETTSE-BETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCeeeeeeccccc-cccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 999954445678999998864311 0000011 111222 5899999998887 899999999999998888
Q ss_pred HcccCc-C-ccccccCCCCCCCCCcchHHHHHHHHHHHHhc
Q 008341 472 NSRIES-G-YVGLKDVNTGDKDNMMQSFFLAETLKYLYLLF 510 (569)
Q Consensus 472 ~~r~~~-G-ya~l~dV~~~~~~D~meSFflaETLKYLYLLF 510 (569)
+.-.+. | +--.-|.+....++..--.--+|.||=++.++
T Consensus 248 ~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~ 288 (346)
T PF07221_consen 248 HGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAY 288 (346)
T ss_dssp HHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHH
T ss_pred heEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHH
Confidence 776543 4 22222333322233333344588888666665
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.69 E-value=0.028 Score=59.36 Aligned_cols=284 Identities=19% Similarity=0.208 Sum_probs=147.5
Q ss_pred hhhhhccccceeeccCCChhHHHHHHHHHHHHhhcc-cCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHH
Q 008341 177 TTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAW-NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIAL 255 (569)
Q Consensus 177 ttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAF-dTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~L 255 (569)
++-|.|=-+=.||. .|++..|+.|+...+.|...| |..+|-=+..++-. | +..+. ...-+.+ =..+-+..
T Consensus 22 ~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~-~-~~~~~----~~~Y~~a-f~l~ala~- 92 (346)
T PF07221_consen 22 VQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDG-G-PLDPQ----KDLYDQA-FALLALAE- 92 (346)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETT-E-EEE------EEHHHHH-HHHHHHHH-
T ss_pred eeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCC-C-CCccc----cchHHHH-HHHHHHHH-
Confidence 44555555666778 689999999999999999766 45546445555322 2 22111 1111221 22344455
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcC--CCCCCcceeecCCCCCCCCCeeeecccCch---HHHHHHHHHHhcCCCCCcchH
Q 008341 256 SQRTGDPKYRQKAEKVIVELNKTF--PADGLLPIYISPDRGTPSYSTITFGAMGDS---FYEYLLKVWIQGNKTSAVKPY 330 (569)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~--~~~GL~p~~id~~tg~~~~~~~t~Ga~~DS---yYEYLLK~~iL~g~~~~~~~~ 330 (569)
++.||++.|.+.|+++++.|.+.. +..|++....++.-... ....+ ..|-++..+-++++ ..|
T Consensus 93 ~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~--------r~~n~~mhl~eA~l~l~~~~~~----~~~ 160 (346)
T PF07221_consen 93 ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP--------RGQNPHMHLLEAFLALYEATGD----PRY 160 (346)
T ss_dssp HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB--------EEHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC--------CCCChhHHHHHHHHHHHHhccC----HHH
Confidence 678999999999999999999853 44577666665533222 01122 35777777777774 336
Q ss_pred HHHHHHHHHHHHHhccccCCC-CCeeeec-cCC---Ccccccccccc--cccchhhh------hhcCCCCCCCchHHHHH
Q 008341 331 RDMWETSMKGLLSLVRRSTPS-SFTYICE-KNG---DSLIDKMDELA--CFAPGMIA------LGSSGYGPGDSEKFLSL 397 (569)
Q Consensus 331 ~~my~~a~~~i~~ll~~~~~~-~~~~v~~-~~g---~~~~~~m~hLs--CF~pGmla------LGa~~~~~~~~~~~l~l 397 (569)
++.-.+.++.+.+.+...... -..|.+. .+. +... +-+. .+-||-.. +-.........++.++.
T Consensus 161 ~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~---d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~ 237 (346)
T PF07221_consen 161 LDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGD---DTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLER 237 (346)
T ss_dssp HHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTT---HSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccc---cccccCccCCchhHHHHHHHHHHHHhcccccHHHHHH
Confidence 666666666555422221111 1112221 110 0000 0000 01233211 11110001124677888
Q ss_pred HHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcccC-
Q 008341 398 AEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE- 476 (569)
Q Consensus 398 A~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~~- 476 (569)
|.+|+..+.+.=-....|...-.++.+ |.. ...++..---.|.+-.+..+|++|||+.|.++.-++++-+.++...+
T Consensus 238 a~~l~~~~~~~G~d~~~gG~~~~~d~~-g~~-~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~d~~ 315 (346)
T PF07221_consen 238 ARRLFDFALEHGWDREGGGLFYSVDRD-GKP-PDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFIDPE 315 (346)
T ss_dssp HHHHHHHHHHHHBSTTTSSB-SEEETT-S-B-SST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB-TT
T ss_pred HHHHHHHHHHheEecCCCeEEEEEeCC-CCc-cccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCCCCC
Confidence 988887776543222233112222211 111 11111111235899999999999999999999999999999998653
Q ss_pred -cCccccccCC
Q 008341 477 -SGYVGLKDVN 486 (569)
Q Consensus 477 -~Gya~l~dV~ 486 (569)
.++-..-|-+
T Consensus 316 ~G~W~~~l~~d 326 (346)
T PF07221_consen 316 YGEWFDYLDRD 326 (346)
T ss_dssp TSSB-SEE-TT
T ss_pred CCeeEeeECCC
Confidence 3465555543
No 15
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=96.57 E-value=0.0011 Score=71.24 Aligned_cols=151 Identities=25% Similarity=0.329 Sum_probs=85.3
Q ss_pred ccccceeeccCCCh-----hHHHHHHHHHHHHhhcccCC---CCCCcceeecCCCCCCCCCCCCCCccccccccchhhHH
Q 008341 182 VGGLLSAYDLSGDK-----VFLEKARDIADRLLPAWNTR---TGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELI 253 (569)
Q Consensus 182 LGGLLSAY~LSgd~-----~lL~KA~eLadrLlpAFdTp---tGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~ 253 (569)
.=++|.||++++++ .+|++|+++.+.+...||+. .||++...+...+. .+..++. -|-..+=..
T Consensus 94 ~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~------~~Kna~s--N~~~~~laa 165 (370)
T PF03663_consen 94 ALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGY------DYKNAIS--NGPAAQLAA 165 (370)
T ss_dssp HHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEE------EEEEHHH--HHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCC------Ccccccc--hHHHHHHHH
Confidence 33688999999999 99999999999999999986 47877522111110 1112221 111223356
Q ss_pred HHHHHhCCchHHHHHHHHHHHHhh--cC-CCCCCcceeecCCC-CCCC-CCeeeecccCchHHHHHHHHHHhcCCCCCcc
Q 008341 254 ALSQRTGDPKYRQKAEKVIVELNK--TF-PADGLLPIYISPDR-GTPS-YSTITFGAMGDSFYEYLLKVWIQGNKTSAVK 328 (569)
Q Consensus 254 ~LS~lTGd~kY~~~a~~i~~~L~~--~~-~~~GL~p~~id~~t-g~~~-~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~ 328 (569)
+|.++|||.+|.+.|+++++-+.+ .. +.+|++-+-++..+ |.-. ....|.-. =.+-.=+.-+|-.+++. +
T Consensus 166 rL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNq--G~~l~a~~~Ly~~T~~~---~ 240 (370)
T PF03663_consen 166 RLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQ--GVFLGAAAYLYNATNDE---Q 240 (370)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHH--HHHHHHHHHHHHHH--H----
T ss_pred HHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHH--HHHHHHHHHHHHhcCCc---c
Confidence 899999999999999999998888 23 45699999998776 4321 11111110 11234455667777543 2
Q ss_pred hHHHHHHHHHHHHHHhc
Q 008341 329 PYRDMWETSMKGLLSLV 345 (569)
Q Consensus 329 ~~~~my~~a~~~i~~ll 345 (569)
.|.+.=++.++++.+++
T Consensus 241 ~yl~~A~~la~~~~~~~ 257 (370)
T PF03663_consen 241 TYLDRAEKLADAAINHF 257 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57777777777766553
No 16
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.52 E-value=0.042 Score=61.89 Aligned_cols=165 Identities=17% Similarity=0.172 Sum_probs=102.0
Q ss_pred hhHHHHHHHHHHhhcCCCC-Ccc-----------ccccchhhhhccccceeec-------cCCChhHHHHHHHHHHHHhh
Q 008341 150 DYSFSSEFMWIANSLDFNK-SYD-----------ASVFETTIRVVGGLLSAYD-------LSGDKVFLEKARDIADRLLP 210 (569)
Q Consensus 150 ~eEF~~A~~~V~~~ldF~~-~~~-----------vsvFEttIR~LGGLLSAY~-------LSgd~~lL~KA~eLadrLlp 210 (569)
.+-|++|++-|.+++-+.. ++. ....|--.=++|||++--- +..++..++.|++|++--.-
T Consensus 309 ~~~~~~a~~~i~~~l~~~s~~~~~~v~~~~~~~~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~ 388 (522)
T PTZ00470 309 RRLFVESAKGIIEHLYKRSPKGLTYIAEMDGGSLTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYE 388 (522)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEeeccCCcCcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHH
Confidence 5568899988887654421 111 1122333345677665432 22356789999999999888
Q ss_pred ccc-CCCCCCcceeecCCCCCC---CC--CCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCC
Q 008341 211 AWN-TRTGIPYNVINLAHGNPH---NP--SWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGL 284 (569)
Q Consensus 211 AFd-TptGiP~~~iNl~~g~~~---~~--~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL 284 (569)
+|. +||||.--.+++..+... .. .+-.-.--+.|. .-+|-|+|||++|.+.+-++++.|.+....++=
T Consensus 389 ~Y~~~~tGl~PE~~~~~~~~~~~~~~~~d~~Y~LRPE~iES------~fylyR~TgD~~yre~gW~~f~ai~k~~rt~~G 462 (522)
T PTZ00470 389 TYATSPTGLGPEIFHFDPNSGDISPNVHDSHYILRPETVES------IFILYRLTGDPKYREWAWKIFQAIEKHCKTENG 462 (522)
T ss_pred HHHhcccCCCCceEEeccCccccccccCCCCCCCChhHHHH------HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 885 799997666666432110 00 000001112222 457999999999999999999999995444444
Q ss_pred cceeecCCCCCCCCCeeeecccCchHH--HHHHHHHHhcCCCC
Q 008341 285 LPIYISPDRGTPSYSTITFGAMGDSFY--EYLLKVWIQGNKTS 325 (569)
Q Consensus 285 ~p~~id~~tg~~~~~~~t~Ga~~DSyY--EYLLK~~iL~g~~~ 325 (569)
+...-|+.+... .....-.||+ |.|-=.|+|+.+.+
T Consensus 463 ya~i~dV~~~~~-----~~~D~MeSFflaETLKYlYLlFsd~~ 500 (522)
T PTZ00470 463 YSGLKNVLTVHP-----QQDDFQESFFLAETLKYLYLLFQPDH 500 (522)
T ss_pred cccccccCCCCC-----CcCCcccchhHHHHHHHHHheecCcc
Confidence 555556654211 1123347887 88887889998766
No 17
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.23 E-value=0.083 Score=55.70 Aligned_cols=247 Identities=21% Similarity=0.212 Sum_probs=133.0
Q ss_pred hccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhC
Q 008341 181 VVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTG 260 (569)
Q Consensus 181 ~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTG 260 (569)
+.+||+.+|+.++|+.+++.|++.++.++......+ ......+|-+. ..|-+.||
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~~~----------------------~~d~~~~g~~~---~~~y~~t~ 84 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEEDGSDY----------------------NLDDHDIGFLL---LDLYERTG 84 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTT----------------------SCCGTTHHHHH---HHHHHHH-
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccCCcc----------------------CCchhhhHHHH---HHHHHHhC
Confidence 678899999999999999999999999987654310 00112233333 34889999
Q ss_pred CchHHHHHHHHHH-HHhhcCC-CCCCcceeecCCCCCCCCCeeeecccCchHH---HHHHHHHHhcCCCCCcchHHHHHH
Q 008341 261 DPKYRQKAEKVIV-ELNKTFP-ADGLLPIYISPDRGTPSYSTITFGAMGDSFY---EYLLKVWIQGNKTSAVKPYRDMWE 335 (569)
Q Consensus 261 d~kY~~~a~~i~~-~L~~~~~-~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyY---EYLLK~~iL~g~~~~~~~~~~my~ 335 (569)
|++|.+++.++.+ .+.+..+ ..|-+.. +... ..-.+ .|+.| ..|.....++|+.+ .++
T Consensus 85 d~~y~~~~~~~a~~~l~~~~~~~~G~~~~--~~~~-----~~~~w---iD~~~M~~p~l~~~~~~tgd~~-------~~~ 147 (336)
T PF07470_consen 85 DEKYKDAAIQAADWLLARRPRTSDGGFWH--NRPY-----PNQVW---IDGMYMNLPFLAWAGKLTGDPK-------YLD 147 (336)
T ss_dssp THHHHHHHHHHHHHHHHTSCBECTGCBEC--TTTS-----TTEEE---TTHHHHHHHHHHHHHHHHTGHH-------HHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCcccc--CCCC-----CCcee---eccccccHHHHHHHHHHHCCcH-------HHH
Confidence 9999999999999 5544333 3444433 1111 11112 68888 88999999999653 344
Q ss_pred HHHHHHHH---hccccCCCCCeeeeccCCCcccccccccccccc---hhhhhhcC----CCC--CCCchHHHHHHHHHHH
Q 008341 336 TSMKGLLS---LVRRSTPSSFTYICEKNGDSLIDKMDELACFAP---GMIALGSS----GYG--PGDSEKFLSLAEELAW 403 (569)
Q Consensus 336 ~a~~~i~~---ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~p---GmlaLGa~----~~~--~~~~~~~l~lA~~L~~ 403 (569)
.|++.+.. ++... ..++.+ .........+.. ..||+ |-.++|-. ..+ ....+.+++.++++++
T Consensus 148 ~a~~q~~~~~~~~~d~-~tGl~~-h~~~~~~~~~~s---~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~ 222 (336)
T PF07470_consen 148 EAVRQFRLTRKYLYDP-ETGLYY-HGYTYQGYADWS---DSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLAD 222 (336)
T ss_dssp HHHHHHHHHHHHHB-T-TTSSBE-SEEETTSSSTTS---T--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CCCcee-eccCCCCCcCcc---cccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 45554433 33221 233322 221111011000 02331 11111111 011 1123567777778877
Q ss_pred HHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhh--------cCcchHHHHHHHHHHHHHHHccc
Q 008341 404 TCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRL--------TGNKTYKEWGWNIFQAFEKNSRI 475 (569)
Q Consensus 404 tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~--------TGD~~yre~gW~if~ai~k~~r~ 475 (569)
.+.+ ++. ++|+-+-.+. ++...-.+|+==|.++.|-+ ..++.|++.+-++++++.++.-.
T Consensus 223 ~l~~-~q~-~~G~w~~~~~----------~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~ 290 (336)
T PF07470_consen 223 ALAR-YQD-EDGLWYQDLD----------DPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAID 290 (336)
T ss_dssp HHHT-TST-TTSBEBSBTT----------TTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-
T ss_pred HHHh-cCC-CCCCcceecC----------CCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccC
Confidence 7543 222 4554332211 11112235655555555444 22679999999999999998223
Q ss_pred CcCccccccCC
Q 008341 476 ESGYVGLKDVN 486 (569)
Q Consensus 476 ~~Gya~l~dV~ 486 (569)
+.|..++.++-
T Consensus 291 ~dG~~~~~~~~ 301 (336)
T PF07470_consen 291 PDGKLGLKGVC 301 (336)
T ss_dssp TTSSSBBTCEB
T ss_pred CCCCeEEeeeE
Confidence 45766666653
No 18
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=95.42 E-value=0.74 Score=47.61 Aligned_cols=189 Identities=22% Similarity=0.175 Sum_probs=98.6
Q ss_pred hhccccceeeccCCChhHHHHHHHHHHHHhhccc-CCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHH
Q 008341 180 RVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWN-TRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQR 258 (569)
Q Consensus 180 R~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFd-TptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~l 258 (569)
=++=+|+..|+. +|+.+++.|++++++|+..-. ...+.. + ..+......+..|.+ .+.+=+..|.+.
T Consensus 87 G~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~~~~~--~---~~~~~~~~G~~hG~a------Gi~~~L~~l~~~ 154 (321)
T cd04791 87 GIGLALLYFART-GDPALLEAAAKIAELLAEALERGDPALL--W---PDFDRVDHGLLHGWA------GIALFLLRLYKA 154 (321)
T ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccccccc--c---ccCCCCCCccccCcH------HHHHHHHHHHHH
Confidence 334456777888 999999999999999986432 222221 1 111111222222222 233447889999
Q ss_pred hCCchHHHHHHHHHHHHhhcCC--CCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 008341 259 TGDPKYRQKAEKVIVELNKTFP--ADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWET 336 (569)
Q Consensus 259 TGd~kY~~~a~~i~~~L~~~~~--~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~ 336 (569)
|||++|.+.|.++.+.+.+... ..|.+. ...+........-|+.| .---|++.+-.+++. .|.+.-++
T Consensus 155 t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~wchG~aG--i~~~l~~l~~~~~d~----~~~~~a~~ 224 (321)
T cd04791 155 TGDSRYLELAEEALDKELARAVVDDGGLLQ----VDEGARLLPYLCSGSAG--LGLLMLRLEAITGDK----RWRDEADG 224 (321)
T ss_pred HCCHHHHHHHHHHHHHHHHhhccCCCCceE----cCCCCccCcccCCCcHH--HHHHHHHHHHhcCCH----HHHHHHHH
Confidence 9999999999999999877432 223322 11111111112222222 224466777777753 35554444
Q ss_pred HHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhc
Q 008341 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQ 410 (569)
Q Consensus 337 a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~ 410 (569)
+++.+.+.... + ..|-|=..|++..=-......+.+++.+.|.++++.....+.
T Consensus 225 ~~~~~~~~~~~----~----------------~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (321)
T cd04791 225 IAHAALSSCYA----N----------------PGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATAD 278 (321)
T ss_pred HHHHHhhhhcc----C----------------ccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccC
Confidence 44444322100 0 011111233322111111112346788888888887776554
No 19
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.35 Score=55.64 Aligned_cols=279 Identities=18% Similarity=0.158 Sum_probs=155.3
Q ss_pred ccccchh----hhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCC--CCCCCCCCCCcccccc
Q 008341 172 ASVFETT----IRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGN--PHNPSWTGGESILADS 245 (569)
Q Consensus 172 vsvFEtt----IR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~--~~~~~~~~~~s~lAe~ 245 (569)
|.-||=. -=.+=-+.=||.++||..+++.|+++-+.|+.---+|-|=-|+..+-.+.- ..-..|+..+ .-+..
T Consensus 265 vPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eE-i~~~L 343 (667)
T COG1331 265 VPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEE-LKEVL 343 (667)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHH-HHHHh
Confidence 5668843 333334556789999999999999999999998778877666555443221 1222343211 11222
Q ss_pred ccchhhHHHHHHHhCCch-------------------HHHHHHHHHHHHhh---cCCCCCCcceeecCCCCCCCCCeeee
Q 008341 246 GTEQLELIALSQRTGDPK-------------------YRQKAEKVIVELNK---TFPADGLLPIYISPDRGTPSYSTITF 303 (569)
Q Consensus 246 GSl~LEF~~LS~lTGd~k-------------------Y~~~a~~i~~~L~~---~~~~~GL~p~~id~~tg~~~~~~~t~ 303 (569)
|..-=+|...--+|.... -.+.++++.+.|.. .+..+ ++|-.. .+ .+
T Consensus 344 g~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P-----~~Ddkv--lt----~w 412 (667)
T COG1331 344 GEDAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQP-----SRDDKV--LT----DW 412 (667)
T ss_pred cccHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCC-----CCCcce--ee----cc
Confidence 322222222222222222 24556666666655 23332 222211 11 11
Q ss_pred -cccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCcc--cccccccccccchhhh
Q 008341 304 -GAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSL--IDKMDELACFAPGMIA 380 (569)
Q Consensus 304 -Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~--~~~m~hLsCF~pGmla 380 (569)
|-++. -|.+.+..+|+.+ |.++=+++.+-|.+.+... .......+|.. ....+--+.++-|+++
T Consensus 413 Nglmi~----aLa~a~~~~~d~~----~l~~A~~~~~fi~~~l~~~-----rl~~~~~~G~a~~~g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIA----ALAEAGRVLGDPE----YLEAAERAADFILDNLYVD-----RLLRRYRGGEAAVAGLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHH----HHHHHHHHcCChH----HHHHHHHHHHHHHHhhccc-----chheeeecCcccccccchhHHHHHHHHHH
Confidence 22232 3788888999765 4455555555555543321 11111112221 2233334566788888
Q ss_pred hhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCC--cc-----ccccCCCCCch--hHHHHHHHHHh
Q 008341 381 LGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQ--DM-----SVGTSWNILRP--ETVESLFYLWR 451 (569)
Q Consensus 381 LGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~--~~-----~~~~~~y~LRP--E~IESlfyLyR 451 (569)
|--..+ ...+++.|++|++.-...+.+-..| |....+. .+ .+.|.. +-.| =.+.-+.=|-+
T Consensus 480 lye~t~----d~~yL~~A~~L~~~~i~~f~d~~gG-----f~~t~~~~~~l~ir~~~~~D~a-~~S~na~~~~~L~~Ls~ 549 (667)
T COG1331 480 LYEATG----DLAYLEKAIELADEAIADFWDDEGG-----FYDTPSDSEDLLIRPKEPTDGA-TPSGNAVAAQALLRLSL 549 (667)
T ss_pred HHHhhC----cHHHHHHHHHHHHHHHHHhcCCCCC-----cccCCCcccccccCCCCCCCCC-CCCHHHHHHHHHHHHHh
Confidence 876543 4689999999999887776653322 2211111 00 011111 0111 25677888999
Q ss_pred hcCcchHHHHHHHHHHHHHHHcc-cCcCccccccC
Q 008341 452 LTGNKTYKEWGWNIFQAFEKNSR-IESGYVGLKDV 485 (569)
Q Consensus 452 ~TGD~~yre~gW~if~ai~k~~r-~~~Gya~l~dV 485 (569)
+|||.+|.|.|+++++++..... .+.|++++..+
T Consensus 550 ltg~~~y~e~A~~~L~a~~~~~~~~p~~~~~~~~a 584 (667)
T COG1331 550 LTGDARYLEAAEDILQAFAGLAERAPFAHAGLLLA 584 (667)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHhCCccchHHHHH
Confidence 99999999999999999987665 46788887654
No 20
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=94.27 E-value=0.11 Score=57.56 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHhhcCCC--CCc-----------------cccccchhhhhccccc--eeeccCCChhHHHHHHHHHHHH
Q 008341 150 DYSFSSEFMWIANSLDFN--KSY-----------------DASVFETTIRVVGGLL--SAYDLSGDKVFLEKARDIADRL 208 (569)
Q Consensus 150 ~eEF~~A~~~V~~~ldF~--~~~-----------------~vsvFEttIR~LGGLL--SAY~LSgd~~lL~KA~eLadrL 208 (569)
.+-|++|++-|.+++-+. .+. ....++.-.=.+||+| +|..+ +++..++.|.+|.+--
T Consensus 233 ~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~-~~~~~~~~A~~l~~~C 311 (452)
T PF01532_consen 233 RDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLF-NDEGDLELAEELTETC 311 (452)
T ss_dssp HHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhccc-CchhHHHHHHHHHHHH
Confidence 666899999998876554 111 1112333344577754 45566 7789999999999998
Q ss_pred hhccc-CCCCCCcceeecCCCCCCCCCCCCC--Ccccc-ccccc--hhh----HHHHHHHhCCchHHHHHHHHHHHHhhc
Q 008341 209 LPAWN-TRTGIPYNVINLAHGNPHNPSWTGG--ESILA-DSGTE--QLE----LIALSQRTGDPKYRQKAEKVIVELNKT 278 (569)
Q Consensus 209 lpAFd-TptGiP~~~iNl~~g~~~~~~~~~~--~s~lA-e~GSl--~LE----F~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (569)
...++ +|||+.--.+++.... .+..|... ...+. ..+.. --| +-+|-|+||||+|.+.+-.+++.|.+.
T Consensus 312 ~~~y~~~~tGl~PE~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~ 390 (452)
T PF01532_consen 312 YWLYKSTPTGLGPEIFSFDPCE-ENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKY 390 (452)
T ss_dssp HHHHHTSSSSS--SEEEESCSC-G--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCceEEEeeccc-cccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHh
Confidence 88887 5899998888887522 00001000 00000 11111 113 457999999999999999999999995
Q ss_pred CCCCCCcceeecCC--CCCCCCCeeeecccCchHH--HHHHHHHHhcCCCC
Q 008341 279 FPADGLLPIYISPD--RGTPSYSTITFGAMGDSFY--EYLLKVWIQGNKTS 325 (569)
Q Consensus 279 ~~~~GL~p~~id~~--tg~~~~~~~t~Ga~~DSyY--EYLLK~~iL~g~~~ 325 (569)
...++=+...-|+. +++.. -.-.||+ |.|-=.|+|+.+.+
T Consensus 391 ~r~~~G~a~i~dv~~~~~~~~-------D~meSf~laETlKYlYLlFsd~~ 434 (452)
T PF01532_consen 391 CRTECGYAGIKDVTSDPPQKD-------DRMESFFLAETLKYLYLLFSDPD 434 (452)
T ss_dssp TEETTEE--BSETTSSSSCBB-------S-B-CHHHHTHHHHHHHHTSSTT
T ss_pred cccceehhhhcccCcCCcccC-------CCccceehHhhhHHHHhhcCCcc
Confidence 54444445555555 32222 2346776 66665689998877
No 21
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=93.00 E-value=0.44 Score=50.27 Aligned_cols=204 Identities=22% Similarity=0.245 Sum_probs=104.3
Q ss_pred ceeeccCCChhHHHHHHHHHHHHhhcc-cCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhh-HHHHHHHhCCch
Q 008341 186 LSAYDLSGDKVFLEKARDIADRLLPAW-NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLE-LIALSQRTGDPK 263 (569)
Q Consensus 186 LSAY~LSgd~~lL~KA~eLadrLlpAF-dTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LE-F~~LS~lTGd~k 263 (569)
+-.|.+++|+.+++.|++.+|.++..+ .++.|-... ... . ...+..+.--|.++ +.+.++.|||++
T Consensus 77 ~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~------~~~-~-----~~~~wiD~~~M~~p~l~~~~~~tgd~~ 144 (336)
T PF07470_consen 77 LDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWH------NRP-Y-----PNQVWIDGMYMNLPFLAWAGKLTGDPK 144 (336)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBEC------TTT-S-----TTEEETTHHHHHHHHHHHHHHHHTGHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCcccc------CCC-C-----CCceeeccccccHHHHHHHHHHHCCcH
Confidence 459999999999999999999766544 445553332 111 1 12334553333444 456899999999
Q ss_pred HHHHHHHHHHHHhhc-C-CCCCCcceeecCCCCCCCCCeeeecccCch--------HHHHHHHHHHhcCCCCCcchHHHH
Q 008341 264 YRQKAEKVIVELNKT-F-PADGLLPIYISPDRGTPSYSTITFGAMGDS--------FYEYLLKVWIQGNKTSAVKPYRDM 333 (569)
Q Consensus 264 Y~~~a~~i~~~L~~~-~-~~~GL~p~~id~~tg~~~~~~~t~Ga~~DS--------yYEYLLK~~iL~g~~~~~~~~~~m 333 (569)
|.+.|.+-++...+. . +..||+=...+.......+ ...|+ +|.. -|++|.+ +....+.+.+.
T Consensus 145 ~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s-~~~Ws-RG~gW~~~Gl~~~l~~lp~------~~~~~~~~~~~ 216 (336)
T PF07470_consen 145 YLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWS-DSFWS-RGNGWAIYGLAEVLEYLPE------DHPERDELLEI 216 (336)
T ss_dssp HHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTS-T--BH-HHHHHHHHHHHHHHHHHHT------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcc-cccCc-chhhHHHHHHHHHHHHhcc------hhhhHHHHHHH
Confidence 999888877777662 2 3467765555544332110 11121 1111 2444433 11101234455
Q ss_pred HHHHHHHHHHhccccCCCCCeeeeccCCC-cccccccccccccchhhhhhcC-CCCCCCchHHHHHHHHHHHHHHHhhcc
Q 008341 334 WETSMKGLLSLVRRSTPSSFTYICEKNGD-SLIDKMDELACFAPGMIALGSS-GYGPGDSEKFLSLAEELAWTCYNFYQS 411 (569)
Q Consensus 334 y~~a~~~i~~ll~~~~~~~~~~v~~~~g~-~~~~~m~hLsCF~pGmlaLGa~-~~~~~~~~~~l~lA~~L~~tC~~~y~~ 411 (569)
+.+.++.+.++ ..++++.+-.-..+. ......+.-+.|+-|++- |.. +. .+.+++.+.|++..+.+... ..
T Consensus 217 ~~~~~~~l~~~---q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~-gi~~g~--~d~~~y~~~a~~a~~~l~~~-~~ 289 (336)
T PF07470_consen 217 AKKLADALARY---QDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLR-GIRLGL--LDPEEYRPAAEKALEALLSN-AI 289 (336)
T ss_dssp HHHHHHHHHTT---STTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHH-HHHTTS--STHHHHHHHHHHHHHHHHHC-EB
T ss_pred HHHHHHHHHhc---CCCCCCcceecCCCCCCCcccHHHHHHHHHHHHH-HHHcCC--CccHHHHHHHHHHHHHHHhC-cc
Confidence 55555554432 123343221111111 112233333445555532 221 12 23678999998888888766 33
Q ss_pred CCCCc
Q 008341 412 TPTKL 416 (569)
Q Consensus 412 t~tGl 416 (569)
.+.|.
T Consensus 290 ~~dG~ 294 (336)
T PF07470_consen 290 DPDGK 294 (336)
T ss_dssp -TTSS
T ss_pred CCCCC
Confidence 34443
No 22
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=92.91 E-value=0.17 Score=52.41 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=66.0
Q ss_pred ccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccC-CCCCCcceeecCCCCCCCCCCCCCCccccccccchhhH
Q 008341 174 VFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNT-RTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLEL 252 (569)
Q Consensus 174 vFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdT-ptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF 252 (569)
+..-..=+.=.|+..|..++|+.+++.|+++.++++..|.. +.|.+. ...+....+.|..|.+- +.+=+
T Consensus 137 ~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~wchG~aG------i~~~l 206 (321)
T cd04791 137 LLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQ----VDEGARLLPYLCSGSAG------LGLLM 206 (321)
T ss_pred cccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceE----cCCCCccCcccCCCcHH------HHHHH
Confidence 33433334445778899999999999999999999988864 344322 12222223345444433 33557
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHhhc
Q 008341 253 IALSQRTGDPKYRQKAEKVIVELNKT 278 (569)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (569)
.+|.+.|+|++|.+.++++.+.+.+.
T Consensus 207 ~~l~~~~~d~~~~~~a~~~~~~~~~~ 232 (321)
T cd04791 207 LRLEAITGDKRWRDEADGIAHAALSS 232 (321)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhh
Confidence 78999999999999999999998864
No 23
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=92.84 E-value=7.2 Score=46.29 Aligned_cols=232 Identities=16% Similarity=0.072 Sum_probs=122.0
Q ss_pred cceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008341 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (569)
Q Consensus 185 LLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (569)
|+-+|..++++.+++.|.++++.+...-. +.. ... .+...+.+.+=+..|.+.|++++|
T Consensus 550 L~~l~~~~~~~~~~~~a~~~~~~l~~~~~-----~~~----------~~D------~~~G~aGii~~Ll~l~~~~~~~~~ 608 (825)
T cd04792 550 LTHLGKLLKDDRLLNLAKEILDLIDELIE-----KDE----------KLD------FISGAAGLILVLLSLYELFLSERF 608 (825)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhc-----ccc----------CCC------EeeecHHHHHHHHHHHhccCChHH
Confidence 34556678899999999999988754211 000 011 122222233446688999999999
Q ss_pred HHHHHHHHHHHhhcC--CCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHH
Q 008341 265 RQKAEKVIVELNKTF--PADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLL 342 (569)
Q Consensus 265 ~~~a~~i~~~L~~~~--~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~ 342 (569)
.+.|.++.+.+.+.. ...+..+ ... ....++.-+.-..--.|++.+..+++.+ +.+.-.++++...
T Consensus 609 l~~a~~~~~~l~~~~~~~~~~~~~-----~~~---~~~~G~aHG~sGi~~aL~~l~~~~~d~~----~~~~a~~~l~~~~ 676 (825)
T cd04792 609 LDLALKCGDHLLENASNEDGGIGP-----AEQ---PNLTGFAHGASGIAWALLRLYKVTGDSR----YLKLAHKALKYER 676 (825)
T ss_pred HHHHHHHHHHHHHhhhhccCCccc-----ccc---cccccccccHHHHHHHHHHHHHHcCcHH----HHHHHHHHHHHHH
Confidence 999999999987632 1223321 111 1123443344445557888888877543 5555555554333
Q ss_pred HhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCC--CCchHHHHHHHHHHHHHHHhhccCCCCcccee
Q 008341 343 SLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGP--GDSEKFLSLAEELAWTCYNFYQSTPTKLAGEN 420 (569)
Q Consensus 343 ~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~--~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~ 420 (569)
+....... +.. .. .+ ...+...-.=.+|.+..-...... .+.+...+.+..+.+++..... +..
T Consensus 677 ~~~~~~~~-~w~--~~-~~---~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~-------~~~ 742 (825)
T cd04792 677 RLFSEEGW-NWP--RK-DG---NSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGF-------GNN 742 (825)
T ss_pred HhcCHhhc-CCC--Cc-Cc---CCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC-------CCC
Confidence 22111111 110 00 00 000000101124433211111111 1234455556666665543210 011
Q ss_pred EeecCCCccccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHccc
Q 008341 421 YFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 475 (569)
Q Consensus 421 ~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~ 475 (569)
.. .---.+-.++.+.++++.|+|++|++.+-..++.+......
T Consensus 743 ~s------------lCHG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 743 HS------------LCHGDLGNLEILLYAAKAFGDEKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred Ce------------ecCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 12223347899999999999999999999998888776654
No 24
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=92.69 E-value=2.7 Score=49.85 Aligned_cols=239 Identities=22% Similarity=0.269 Sum_probs=133.4
Q ss_pred cccccchhhhhccccceeeccCC--------------------------------ChhHHHHHHHHHHHHhhcc------
Q 008341 171 DASVFETTIRVVGGLLSAYDLSG--------------------------------DKVFLEKARDIADRLLPAW------ 212 (569)
Q Consensus 171 ~vsvFEttIR~LGGLLSAY~LSg--------------------------------d~~lL~KA~eLadrLlpAF------ 212 (569)
..|.|+..|-.+++|... ||.. .+-|++.|.++||-|+.--
T Consensus 541 ~tS~fd~vi~~l~~lg~e-dl~rQl~iI~~s~~s~~~~~~~~~~~l~l~~~~ti~~e~~v~~a~~ige~i~~~~I~g~~~ 619 (963)
T COG4403 541 QTSLFDFVIGSLDQLGVE-DLERQLYIIKISFISVKINKRKPVNFLNLSSKHTIDNEYFVSIANDIGEHIIKQLIIGVDD 619 (963)
T ss_pred hhhhHHHHHHhhhccChh-HHHHhHHHhhhhhhhhhhcccCcccccCccccccccHHHHHHHHHHHHHHHHHHHhccccC
Confidence 467888888888877543 2211 2469999999999987521
Q ss_pred -cC-CCCCCcceeecCCCCCCCCCCCC---CCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcce
Q 008341 213 -NT-RTGIPYNVINLAHGNPHNPSWTG---GESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPI 287 (569)
Q Consensus 213 -dT-ptGiP~~~iNl~~g~~~~~~~~~---~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~ 287 (569)
.+ -.|||+. + .| .+|.- +...--...-+.|=|.+|..+||...|.+.|.++.+.+.+.... -|.|.
T Consensus 620 ~~~~~~~is~~---~-~g----~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~-~~~~~ 690 (963)
T COG4403 620 FETSLIWISTT---F-EG----QGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNN-NLNPI 690 (963)
T ss_pred CcceEEEEEee---e-cc----ceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhh-ccCCc
Confidence 11 1133331 1 11 22220 11111112234577999999999999999999999999885433 34441
Q ss_pred eecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCccccc
Q 008341 288 YISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDK 367 (569)
Q Consensus 288 ~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~ 367 (569)
..|.+++ .-||+--|.|-+.++++.. ...-+.+.+.++......+..++ |++
T Consensus 691 ----~iga~~G--------~~g~~yal~~I~~~~~~~~----l~~~~~~~i~~le~~v~~~~~~d--~i~---------- 742 (963)
T COG4403 691 ----NIGAFTG--------LSGYFYALWKIYSVTRDNY----LIQSAENSIRHLEILVQKSKDPD--FIN---------- 742 (963)
T ss_pred ----ccccccc--------cchhhhhhHHHHHhcccHH----HHHHHHHHHHHHHHHHhhccCcc--hhh----------
Confidence 1222221 2345555677777777543 23333444444444443332111 221
Q ss_pred ccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHH
Q 008341 368 MDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLF 447 (569)
Q Consensus 368 m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlf 447 (569)
..+|-..+|-+ .+..-+.++.+++|..+.+.|++--...-+ .+ .+ -.| .--.---+|=++-
T Consensus 743 -----Gl~g~i~~L~~-iYk~~~epk~l~~ais~~~~l~~~~v~~d~--s~-~~--l~g--------fshg~sgi~~tL~ 803 (963)
T COG4403 743 -----GLAGVICVLVS-IYKLTDEPKFLELAISLGRILMEKIVGNDS--SE-TV--LLG--------FSHGASGIILTLL 803 (963)
T ss_pred -----ccHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHHHhhcccc--cc-ce--ecc--------cccchHHHHHHHH
Confidence 11222222322 122234679999999999999854322111 11 11 111 1112234677888
Q ss_pred HHHhhcCcchHHHHHHHHH
Q 008341 448 YLWRLTGNKTYKEWGWNIF 466 (569)
Q Consensus 448 yLyR~TGD~~yre~gW~if 466 (569)
=+|.+|||+++...+-+.+
T Consensus 804 ~ly~~T~e~~l~~~i~e~~ 822 (963)
T COG4403 804 KLYEATGEESLLKKIKELL 822 (963)
T ss_pred HHHHhcCcHHHHHHHHHHH
Confidence 8999999999999998865
No 25
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.01 E-value=0.37 Score=53.65 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=57.0
Q ss_pred hccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhC
Q 008341 181 VVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTG 260 (569)
Q Consensus 181 ~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTG 260 (569)
.+-|++.+|.++|-..+|+-+..+||.+-..|+--++ -+.|.+ +=+-+-|.+..|.++||
T Consensus 136 Lieg~va~~qaTGkr~lldV~~rlADhi~tvfgp~~~-------q~~g~~-------------gH~eielAl~~Ly~~Tg 195 (589)
T COG3533 136 LIEGGVAAHQATGKRRLLDVVCRLADHIATVFGPEED-------QVPGYC-------------GHPEIELALAELYRLTG 195 (589)
T ss_pred HHhhhhHHHHhhCcchHHHHHHHHHHhhhhhcCcccc-------cccccc-------------CCCchhHHHHHHHHHhc
Confidence 5678999999999999999999999999998873322 222332 23335567899999999
Q ss_pred CchHHHHHHHHHH
Q 008341 261 DPKYRQKAEKVIV 273 (569)
Q Consensus 261 d~kY~~~a~~i~~ 273 (569)
|++|.+.|.+.+.
T Consensus 196 ~~rYL~LA~~Fi~ 208 (589)
T COG3533 196 DQRYLDLARRFIH 208 (589)
T ss_pred ChHHHHHHHHHHH
Confidence 9999999987544
No 26
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=90.26 E-value=4.5 Score=45.71 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHHHhhc-----CCCCCCcceeecCCCCCCC--CCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHH
Q 008341 262 PKYRQKAEKVIVELNKT-----FPADGLLPIYISPDRGTPS--YSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMW 334 (569)
Q Consensus 262 ~kY~~~a~~i~~~L~~~-----~~~~GL~p~~id~~tg~~~--~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my 334 (569)
..|.+.|++.+-+-++. ++.|-|=|. +|... +.+=++|...-..-+-|=-..||++.+ -|
T Consensus 31 ~~~Re~vr~MFyhayDnYm~hAFP~DEL~Pl-----tC~g~~~~~~D~~G~ysLtLIDaLdTLailGn~~--------eF 97 (622)
T KOG2429|consen 31 KQYREEVREMFYHAYDNYMEHAFPYDELKPL-----TCVGRGPGVNDTLGSYSLTLIDALDTLAILGNRT--------EF 97 (622)
T ss_pred HHHHHHHHHHHHHhhhhHhhccCCccccCcc-----eecCCCCCccccccccchhhHHHhhHHHHhCChH--------HH
Confidence 57888899888887773 455555444 44432 223445555444555555556676643 48
Q ss_pred HHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhh---hhcCC----C-CCCCchHHHHHHHHHHHHHH
Q 008341 335 ETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIA---LGSSG----Y-GPGDSEKFLSLAEELAWTCY 406 (569)
Q Consensus 335 ~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmla---LGa~~----~-~~~~~~~~l~lA~~L~~tC~ 406 (569)
++|++-+.+.+......... |=|. .+ =-+||+|. ++.+. + ..+=.-+.|.+|+++++---
T Consensus 98 ~raV~lv~~~~~Fd~d~~Vq-VFEt-------tI----RVlGGLLSAHllA~~~~~~~~~~~~y~g~LLrLA~dlA~RLL 165 (622)
T KOG2429|consen 98 QRAVRLVIETVSFDIDSTVQ-VFET-------TI----RVLGGLLSAHLLAKKDPVGVFLGPDYDGELLRLAEDLARRLL 165 (622)
T ss_pred HHHHHHHHhhCCcccCCeeE-EEEE-------eh----hhhhhHHHHHHhhccCccCccccCCCCchHHHHHHHHHHhhc
Confidence 88999887766443221111 1111 00 01233332 11000 0 00113468899999998887
Q ss_pred HhhccCCCCccceeEeecCCCc---cc----cccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHcccCcCc
Q 008341 407 NFYQSTPTKLAGENYFFRDGQD---MS----VGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGY 479 (569)
Q Consensus 407 ~~y~~t~tGl~PE~~~f~~~~~---~~----~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~~~Gy 479 (569)
-.+. ||||+.=-.++...|-+ .. .+-...+ +| .=.|=|+||||+|-+.|...+.++=+ .|.+-|-
T Consensus 166 PAF~-T~TGiPy~~vNLk~GV~~~Et~~tctAg~gsll-----lE-Fg~LSrLTGD~~fE~vA~~A~~~lW~-~RS~igL 237 (622)
T KOG2429|consen 166 PAFE-TPTGIPYGRVNLKYGVDKGETTETCTAGAGSLL-----LE-FGTLSRLTGDPKFEKVARRALDALWS-LRSGIGL 237 (622)
T ss_pred cccc-CCCCCCcceeehhcCCCCCCCcceeccccccee-----ee-hhhhHHhhCCcHHHHHHHHHHHHHHh-hcCCCCc
Confidence 7787 89999877777765422 00 1112222 22 23567999999999999999988755 3555563
Q ss_pred cc-cccCCCCCC-------CCCcchHHHHHHHHHHHHhcCCCCcc
Q 008341 480 VG-LKDVNTGDK-------DNMMQSFFLAETLKYLYLLFSPTTVI 516 (569)
Q Consensus 480 a~-l~dV~~~~~-------~D~meSFflaETLKYLYLLFsd~~~i 516 (569)
-| .-||.+++. .--..||| |-|===|.||.|++.+
T Consensus 238 lGn~idV~tG~W~~~~sGIGAgiDSfy--EYllK~yILfgd~e~l 280 (622)
T KOG2429|consen 238 LGNHIDVQTGEWTAPDSGIGAGIDSFY--EYLLKGYILFGDPELL 280 (622)
T ss_pred ccceeeccccceeccccccccchHHHH--HHHHHHheecCCHHHH
Confidence 33 347876542 34567876 5554457888888654
No 27
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=89.03 E-value=20 Score=37.96 Aligned_cols=268 Identities=18% Similarity=0.164 Sum_probs=133.5
Q ss_pred HHHHHHHHhhcCC-CCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCC-CCCCcceeecCCCCCC
Q 008341 154 SSEFMWIANSLDF-NKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTR-TGIPYNVINLAHGNPH 231 (569)
Q Consensus 154 ~~A~~~V~~~ldF-~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTp-tGiP~~~iNl~~g~~~ 231 (569)
+.|++.+...+.. ..+..+++|.-..=++--|+..|..++|+.+++.|.+.++.++.+...+ ...+
T Consensus 29 ~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 96 (343)
T cd04794 29 SWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLP------------ 96 (343)
T ss_pred HHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCc------------
Confidence 4556666543322 1245566777666666666778888999999999999999998764221 1000
Q ss_pred CCCCCCCCccccccccchhhHHHHHHHhCCc-hHHHHHHHHHHHHhhc--CCCC---CCcceeecCCCCCCCCCeeee--
Q 008341 232 NPSWTGGESILADSGTEQLELIALSQRTGDP-KYRQKAEKVIVELNKT--FPAD---GLLPIYISPDRGTPSYSTITF-- 303 (569)
Q Consensus 232 ~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~-kY~~~a~~i~~~L~~~--~~~~---GL~p~~id~~tg~~~~~~~t~-- 303 (569)
. +..-.-+|.+ +=+..|-+.|++. ...+.++++.+.+... .... ..+|...+.. +. ...++
T Consensus 97 -~-----d~l~G~aG~l-~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~---~~~G~aH 165 (343)
T cd04794 97 -D-----ELLYGRAGYL-YALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWH-GK---EYLGAAH 165 (343)
T ss_pred -h-----hhhccHHHHH-HHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc-Cc---eecchhh
Confidence 0 1111223333 3377788888843 3445556655554431 1111 1222222111 11 01122
Q ss_pred cccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCe-eeeccCCCcccccccccccccchhhhhh
Q 008341 304 GAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFT-YICEKNGDSLIDKMDELACFAPGMIALG 382 (569)
Q Consensus 304 Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~-~v~~~~g~~~~~~m~hLsCF~pGmlaLG 382 (569)
|+.|--+ -|++.+..+++.+ +.+.-.++++-+.+.... . .++. ...... .+...+.-+=.||.+.+=
T Consensus 166 G~aGI~~--~L~~~~~~~~~~~----~~~~i~~~i~~~~~~~~~-~-g~w~~~~~~~~----~~~~~~wChG~~Gi~~~l 233 (343)
T cd04794 166 GLAGILY--ILLQTPLFLLKPS----LAPLIKRSLDYLLSLQFP-S-GNFPSSLGNRK----RDRLVQWCHGAPGIVYLL 233 (343)
T ss_pred hHHHHHH--HHHhhhhhcCCcc----HHHHHHHHHHHHHHhhcc-C-CCCCCccCCCC----CCccccccCCCchHHHHH
Confidence 2222222 2666776665433 666666777665544211 1 1111 111000 111111212236655431
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcCcchHHHHH
Q 008341 383 SSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWG 462 (569)
Q Consensus 383 a~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~g 462 (569)
......-+.+++.+.++...++.+ + .|+.-....+-- +... ..+.+..+|+.|+|++|.++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~---~---~g~~~~~~~lCH------G~~G------~~~~lL~~~~~~~~~~~~~~a 295 (343)
T cd04794 234 AKAYLVFKEEQYLEAAIKCGELIW---K---RGLLKKGPGLCH------GIAG------NAYAFLLLYRLTGDLKYLYRA 295 (343)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHH---H---hCCccCCCcccc------Cccc------hHHHHHHHHHHhCcHHHHHHH
Confidence 111111124566666666665443 1 133221111111 1222 468899999999999999999
Q ss_pred HHHHHHHHHHcc
Q 008341 463 WNIFQAFEKNSR 474 (569)
Q Consensus 463 W~if~ai~k~~r 474 (569)
-.+.+.+.+...
T Consensus 296 ~~~~~~~~~~~~ 307 (343)
T cd04794 296 CKFAEFLINYGF 307 (343)
T ss_pred HHHHHHHhcchh
Confidence 999888776543
No 28
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=89.01 E-value=29 Score=35.51 Aligned_cols=254 Identities=13% Similarity=0.122 Sum_probs=130.0
Q ss_pred cceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008341 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (569)
Q Consensus 185 LLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (569)
|+..|..++++.+.+.|.+.-+.+....+.... .. .+.....+.+..=+..+++.++|+++
T Consensus 11 l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~----------------~~~~~G~~Gi~~~l~~l~~~~~~~~~ 71 (343)
T cd04434 11 LLELYRVTPDEKYQDLAHKALEYIVKSLSSLPD---TD----------------ISLFSGLAGIAYALAALSKGLGDQEL 71 (343)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHHHHhCCC---CC----------------eeeecchHHHHHHHHHHHHHcCCHHH
Confidence 445677788999999999988888876553211 01 12223334445557788889999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHh
Q 008341 265 RQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSL 344 (569)
Q Consensus 265 ~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~l 344 (569)
.+.+.++++.+.+....+ .. ...+.+-.+.-+.-=+|+..+-.+++.. +.+.-.+..+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~------~~-------~~~~d~~~G~aG~~~~ll~~~~~~~~~~----~~~~~~~~~~~l~~~ 134 (343)
T cd04434 72 LKELLELLLLLVELILED------LK-------DLNYDLLSGLAGLLLALLLLYKTFGEEI----FLELIRKILDYLLEL 134 (343)
T ss_pred HHHHHHHHHHhhhhhhcc------cC-------CCCcceeechHHHHHHHHHHHHhcCCcC----HHHHHHHHHHHHHHh
Confidence 999999988887632211 00 1112222233344456666666655433 445555555555443
Q ss_pred ccccCCCCCeeeeccCCCccccccccccccc---chhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeE
Q 008341 345 VRRSTPSSFTYICEKNGDSLIDKMDELACFA---PGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENY 421 (569)
Q Consensus 345 l~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~---pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~ 421 (569)
..... .+.........+ .....|. +|....=.......+.+...++++.+...+-+.+.. ..+.-+...
T Consensus 135 ~~~~~-~~~~~~~~~~~~------~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 206 (343)
T cd04434 135 GKNGD-GKIRWPMYFPEG------RVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDD-SGGFWWPSR 206 (343)
T ss_pred hhhcc-CCCceeeeccCC------ccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCC-CCCCCCCCC
Confidence 32211 111110000000 0111122 222211011010012334555555555544333322 222222100
Q ss_pred eecCCCccccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHccc---C---c-CccccccC
Q 008341 422 FFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRI---E---S-GYVGLKDV 485 (569)
Q Consensus 422 ~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~ai~k~~r~---~---~-Gya~l~dV 485 (569)
.... ......|=---|=++-++..++++|+|+++.+.+-++++.+.+..+. . | |.+|+-+.
T Consensus 207 --~~~~-~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ 274 (343)
T cd04434 207 --SNGG-NRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLI 274 (343)
T ss_pred --CCCC-ccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHH
Confidence 0000 01122333445678889999999999999999998888776665542 1 2 77776443
No 29
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=88.24 E-value=34 Score=40.74 Aligned_cols=232 Identities=14% Similarity=0.122 Sum_probs=120.2
Q ss_pred eeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHH
Q 008341 188 AYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQK 267 (569)
Q Consensus 188 AY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~ 267 (569)
.|..++|+.+.+.|.++.+.+....+... .. .. ..+.....+.+.+=+..|++.|++++|.+.
T Consensus 503 l~~~t~~~~~~~~a~~~l~~l~~~~~~~~---~~--------~~------~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~ 565 (825)
T cd04792 503 LGQLTGDERYTRLARKILDSLVKSLSELK---TD--------DT------GIGAFSGLGGILYALTHLGKLLKDDRLLNL 565 (825)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHhccc---cc--------cc------CceeEechhHHHHHHHHHHHHcCCHHHHHH
Confidence 35667788899999999888876654321 00 00 112233444555667889999999999999
Q ss_pred HHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccc
Q 008341 268 AEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRR 347 (569)
Q Consensus 268 a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~ 347 (569)
|.++.+.+....... . ...+=.+.-+.-=+|+..|-.+++. .+.+.-.++.+.+.+....
T Consensus 566 a~~~~~~l~~~~~~~---------~-------~~D~~~G~aGii~~Ll~l~~~~~~~----~~l~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 566 AKEILDLIDELIEKD---------E-------KLDFISGAAGLILVLLSLYELFLSE----RFLDLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHHhhccc---------c-------CCCEeeecHHHHHHHHHHHhccCCh----HHHHHHHHHHHHHHHhhhh
Confidence 999998876532110 0 0111111223334577777777643 3444433344333322111
Q ss_pred cCCCCCeeeeccCCCccc-ccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCC
Q 008341 348 STPSSFTYICEKNGDSLI-DKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDG 426 (569)
Q Consensus 348 ~~~~~~~~v~~~~g~~~~-~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~ 426 (569)
. ..+. + . .+.... ....-.+..+-.++.+... .+.+++++.|.++.+.+...+..... .|...
T Consensus 626 ~-~~~~-~-~--~~~~~~~G~aHG~sGi~~aL~~l~~~----~~d~~~~~~a~~~l~~~~~~~~~~~~-------~w~~~ 689 (825)
T cd04792 626 E-DGGI-G-P--AEQPNLTGFAHGASGIAWALLRLYKV----TGDSRYLKLAHKALKYERRLFSEEGW-------NWPRK 689 (825)
T ss_pred c-cCCc-c-c--ccccccccccccHHHHHHHHHHHHHH----cCcHHHHHHHHHHHHHHHHhcCHhhc-------CCCCc
Confidence 1 1111 1 0 000000 0111111111112222221 13567888887777655433322111 11111
Q ss_pred CccccccCCCCCchhHHHHHHHHHhh--cCcchHHHHHHHHHHHHHHH
Q 008341 427 QDMSVGTSWNILRPETVESLFYLWRL--TGNKTYKEWGWNIFQAFEKN 472 (569)
Q Consensus 427 ~~~~~~~~~y~LRPE~IESlfyLyR~--TGD~~yre~gW~if~ai~k~ 472 (569)
........|=---|=++-++..++++ ++|+.+.+.+-++.+.+.+.
T Consensus 690 ~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~ 737 (825)
T cd04792 690 DGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE 737 (825)
T ss_pred CcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh
Confidence 11111223445567788899999999 79999999988888877654
No 30
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=87.67 E-value=0.89 Score=50.64 Aligned_cols=104 Identities=25% Similarity=0.324 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHHHhhcccCC----CCCCcceeecCCCCCCCCCCCCC-Cccccccccch---hhHHHHHHHhCCchH
Q 008341 193 GDKVFLEKARDIADRLLPAWNTR----TGIPYNVINLAHGNPHNPSWTGG-ESILADSGTEQ---LELIALSQRTGDPKY 264 (569)
Q Consensus 193 gd~~lL~KA~eLadrLlpAFdTp----tGiP~~~iNl~~g~~~~~~~~~~-~s~lAe~GSl~---LEF~~LS~lTGd~kY 264 (569)
.+...|+--++-+|.+|...-.+ |-+-..-+|..++.+....++.| +..++-+.|=| ==+..||.+||||+|
T Consensus 11 ~~~~~l~~v~~y~d~vl~~~~d~~~~~TPLlaDG~D~~t~~pV~W~~pDg~~~~iSNfAsQQN~lR~L~~LS~lTgd~~Y 90 (557)
T PF06917_consen 11 QDDERLSAVKQYADNVLQHARDPYENPTPLLADGIDPRTLKPVEWIFPDGRDAPISNFASQQNFLRTLVGLSNLTGDPKY 90 (557)
T ss_dssp ----HHHHHHHHHHHHHHHTB--STS--S-B-SEE-TTT--B-EEE-TTS-EEEEE-GGG-HHHHHHHHHHHHHH--THH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCeeccccccCCCCceEEECCCCCccccccHHHHHHHHHHHHHHHhccCCHHH
Confidence 35678888888888888766433 33334567777777654333332 34455555544 235669999999999
Q ss_pred HHHHHHHHHHHhhc-CCCCCCcc----eeecCCCCCC
Q 008341 265 RQKAEKVIVELNKT-FPADGLLP----IYISPDRGTP 296 (569)
Q Consensus 265 ~~~a~~i~~~L~~~-~~~~GL~p----~~id~~tg~~ 296 (569)
.+.|..+.+-.... ....||+= .+||-+|.+.
T Consensus 91 ~q~A~~~~~yfldh~~D~~GL~~WGGHrFi~L~tl~~ 127 (557)
T PF06917_consen 91 QQRAQEIIRYFLDHFVDDSGLFYWGGHRFINLDTLQI 127 (557)
T ss_dssp HHHHHHHHHHHHHHSB-TTS-BS-STT-EEETTT--E
T ss_pred HHHHHHHHHHHHHhccCCCcceeecCceeEecccCCc
Confidence 99999999999885 33447752 4677666553
No 31
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=87.07 E-value=0.81 Score=49.39 Aligned_cols=139 Identities=26% Similarity=0.369 Sum_probs=77.8
Q ss_pred eccCCChhHHHHHHHHHHHHhh-cc-cCCCCCCcceeecCCC--CCCCCCCCCCCccccccccchhhHHHHHHHhCCc-h
Q 008341 189 YDLSGDKVFLEKARDIADRLLP-AW-NTRTGIPYNVINLAHG--NPHNPSWTGGESILADSGTEQLELIALSQRTGDP-K 263 (569)
Q Consensus 189 Y~LSgd~~lL~KA~eLadrLlp-AF-dTptGiP~~~iNl~~g--~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~-k 263 (569)
|..++|+.+|++|+.+-|.+.- -+ |+.+|+=+..++.... ......| +--.|++.-=...|.+.|++. +
T Consensus 168 ~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~------TYNqG~~l~a~~~Ly~~T~~~~~ 241 (370)
T PF03663_consen 168 YRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKW------TYNQGVFLGAAAYLYNATNDEQT 241 (370)
T ss_dssp HHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---------HHHHHHHHHHHHHHHHHH--H-H
T ss_pred HHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCcee------chHHHHHHHHHHHHHHhcCCccH
Confidence 4567899999999999999887 44 6777988888866641 1112223 344577777788999999887 9
Q ss_pred HHHHHHHHHHHHhhc-CCC-CCCcceeecCCCCCCCCCeeeecccCc----hHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 008341 264 YRQKAEKVIVELNKT-FPA-DGLLPIYISPDRGTPSYSTITFGAMGD----SFYEYLLKVWIQGNKTSAVKPYRDMWETS 337 (569)
Q Consensus 264 Y~~~a~~i~~~L~~~-~~~-~GL~p~~id~~tg~~~~~~~t~Ga~~D----SyYEYLLK~~iL~g~~~~~~~~~~my~~a 337 (569)
|.+.|+++.+...+. ... .|.+... .|+.. -..+...- =|..||.+.....+... +.|.+...+.
T Consensus 242 yl~~A~~la~~~~~~~~~~~~gil~e~----~ce~~---~~~~~d~~~Fkgi~~r~L~~l~~~~~~~~--~~~~~~l~~~ 312 (370)
T PF03663_consen 242 YLDRAEKLADAAINHFFDNGDGILTEE----ACEPS---GTCDGDQPLFKGIFARYLADLAQVAPDTA--DTYRDFLRKN 312 (370)
T ss_dssp HHHHHHHHHHHHHHHHEETT--EE-----------------SSSGGGGHHHHHHHHHHHHHHHHT-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeecc----ccccC---cCcCCccHHHHHHHHHHHHHHHHHCcchH--HHHHHHHHHH
Confidence 999999999999874 222 2333221 11110 00111111 15689999888886544 5667776666
Q ss_pred HHHHH
Q 008341 338 MKGLL 342 (569)
Q Consensus 338 ~~~i~ 342 (569)
++++-
T Consensus 313 a~~a~ 317 (370)
T PF03663_consen 313 ADAAW 317 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 32
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=86.39 E-value=42 Score=34.38 Aligned_cols=272 Identities=15% Similarity=0.088 Sum_probs=131.4
Q ss_pred hHHHHHHHHHHhhcCCCCCccccccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCC
Q 008341 151 YSFSSEFMWIANSLDFNKSYDASVFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNP 230 (569)
Q Consensus 151 eEF~~A~~~V~~~ldF~~~~~vsvFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~ 230 (569)
+..+++++++.+.++-......++|.-..-++=.|+-.|...+|+.+++.+.++.+.+......+.. .
T Consensus 25 ~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 92 (343)
T cd04434 25 DLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLK------------D 92 (343)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccC------------C
Confidence 3345666666554332221355666655444444555566678999999999999988764432200 0
Q ss_pred CCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCC--CCCcceeecCCCCCCCCCeeeecccCc
Q 008341 231 HNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPA--DGLLPIYISPDRGTPSYSTITFGAMGD 308 (569)
Q Consensus 231 ~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~--~GL~p~~id~~tg~~~~~~~t~Ga~~D 308 (569)
.+. ..+.....+.+=+..+.+.|+++.+.+.+.++.+.|...... .+......+. .+ ....++.-+.-
T Consensus 93 ~~~------d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~---~~~~g~~HG~~ 162 (343)
T cd04434 93 LNY------DLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFP-EG---RVNLGLAHGLA 162 (343)
T ss_pred CCc------ceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeecc-CC---ccccchhhhhH
Confidence 011 112222233344567778889999999999999999874321 1111110010 11 11122322233
Q ss_pred hHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccc---cchhhhhhcCC
Q 008341 309 SFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACF---APGMIALGSSG 385 (569)
Q Consensus 309 SyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF---~pGmlaLGa~~ 385 (569)
..--.|++.+..+++ +.+.+.-+.++.-..+..... .+. +.... .........++ .+|++..=...
T Consensus 163 Gi~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~----~~~~~~~~~~wChG~~Gi~~~l~~~ 231 (343)
T cd04434 163 GILLALLLLYKKTVD----KSLEALIKALLKYERRLQDDS--GGF-WWPSR----SNGGNRFLVAWCHGAPGILLALLLA 231 (343)
T ss_pred HHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHccCCC--CCC-CCCCC----CCCCccccceecCCChhHHHHHHHH
Confidence 344456666766532 334444444444333322111 111 00000 00011111122 24433211111
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcCcchHHHHHHHH
Q 008341 386 YGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTYKEWGWNI 465 (569)
Q Consensus 386 ~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~i 465 (569)
....+.+.+.+.+++..+.+.+..... .....+ ----.=+++.+..+++.|+|++|++.+-.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l------------ChG~~G~~~~ll~l~~~~~~~~~~~~a~~~ 294 (343)
T cd04434 232 YKALGDDKYDEAAEKALELAWKRGLLE-----LKNPGL------------CHGIAGNLLILLLLYKLTGDLKFLARALAL 294 (343)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHhhhcc-----CCCCCc------------CcCccchHHHHHHHHHHhCCHHHHHHHHHH
Confidence 111123456666655555444332210 011111 111223778889999999999999999887
Q ss_pred HHHHHHH
Q 008341 466 FQAFEKN 472 (569)
Q Consensus 466 f~ai~k~ 472 (569)
.+.+...
T Consensus 295 ~~~~~~~ 301 (343)
T cd04434 295 ALLLISH 301 (343)
T ss_pred HHHHHHH
Confidence 7755543
No 33
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=86.08 E-value=9.6 Score=40.88 Aligned_cols=202 Identities=18% Similarity=0.262 Sum_probs=117.8
Q ss_pred ccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccc-cccccchhhHHH-HHHHhCCchHHHH
Q 008341 190 DLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESIL-ADSGTEQLELIA-LSQRTGDPKYRQK 267 (569)
Q Consensus 190 ~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~l-Ae~GSl~LEF~~-LS~lTGd~kY~~~ 267 (569)
.++|+++|-+||+.--|.|---=.-.+.+--..||..+|. |+..+|.+ |.+-|. -|+.- ---+.||..|.+.
T Consensus 199 ~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgd-----w~rkdsgigagidsy-yey~lkayillgddsfldr 272 (587)
T KOG2430|consen 199 RFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGD-----WTRKDSGIGAGIDSY-YEYLLKAYILLGDDSFLDR 272 (587)
T ss_pred hccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCc-----ceecccCcCcchHHH-HHHHHHHhheeccHHHHHH
Confidence 5789999999999999998655445566666778888763 55555533 455554 34333 3346799999999
Q ss_pred HHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccc
Q 008341 268 AEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRR 347 (569)
Q Consensus 268 a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~ 347 (569)
-.+-+++|.+--... |.++|+.--++.-..-+| -|+..-+..-.-+|-|+. +...+|.+..++-|++|-.-
T Consensus 273 fn~hydai~ryi~k~---pi~ldvhihkp~l~ar~~---mdallaf~pglqvlkgdi---k~aie~heml~qvikkh~fl 343 (587)
T KOG2430|consen 273 FNKHYDAIKRYINKG---PIFLDVHIHKPMLAARGF---MDALLAFFPGLQVLKGDI---KEAIEMHEMLFQVIKKHKFL 343 (587)
T ss_pred HHHHHHHHHHHhcCC---CeEEEEecccchhhHhhH---HHHHHHhCcchhhhcccc---HHHHHHHHHHHHHHHHcccC
Confidence 999999999832221 566666554443221111 244333333334566654 33556777777777764321
Q ss_pred cCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCcc
Q 008341 348 STPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLA 417 (569)
Q Consensus 348 ~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~ 417 (569)
+..--..|---+..-.+++.+-..+.|+ +.....+.|++.|+.|++.. +-|...|.|.+
T Consensus 344 peaft~df~vhwaehpirpefaestyfl----------ykat~dp~yl~v~k~iidni-nkyakvpcgfa 402 (587)
T KOG2430|consen 344 PEAFTHDFQVHWAEHPIRPEFAESTYFL----------YKATGDPHYLEVAKQIIDNI-NKYAKVPCGFA 402 (587)
T ss_pred hHhhcccceeecccCCCChhhhhhheee----------ecccCCchHHHHHHHHHHHH-hhheeCCchHH
Confidence 1100001111122223444444444444 11123568999999999865 55666677754
No 34
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=82.25 E-value=3.2 Score=41.08 Aligned_cols=101 Identities=20% Similarity=0.326 Sum_probs=63.2
Q ss_pred CCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCC------CCeeeec
Q 008341 231 HNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPS------YSTITFG 304 (569)
Q Consensus 231 ~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~------~~~~t~G 304 (569)
..++|. |..|..--++ =|.+..++|||++|.++|+++++.+.......|..-..-+- +.|- ...+.+-
T Consensus 22 l~~gW~---SamaQG~a~s-~l~RAy~~t~d~~Yl~aA~~al~~f~~~~~~GG~~~~~~~~--~~wyeEYp~~p~s~VLN 95 (189)
T PF06662_consen 22 LSPGWY---SAMAQGQAIS-VLARAYQLTGDEKYLDAAKKALNSFKVPVEEGGVLATFKNK--YPWYEEYPTTPPSYVLN 95 (189)
T ss_pred CCCCcH---hHHHHHHHHH-HHHHHHHhHCCHHHHHHHHHHHHHhcChHhhCCeeEEecCC--cEeEeecCCCCCCEEee
Confidence 456674 4444433232 27799999999999999999999987755455554443221 3331 2233444
Q ss_pred ccCch---HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhc
Q 008341 305 AMGDS---FYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLV 345 (569)
Q Consensus 305 a~~DS---yYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll 345 (569)
|..-| .|+|- ..+++ +...++|++.+++++++|
T Consensus 96 GfiysL~GLyd~~----~~~~~----~~A~~lf~~Gl~sLk~~L 131 (189)
T PF06662_consen 96 GFIYSLIGLYDYY----RLTGD----EEAKELFDKGLKSLKKML 131 (189)
T ss_pred hHHHHHHHHHHHH----HhcCC----HHHHHHHHHHHHHHHHHH
Confidence 43333 34554 33443 457899999999999865
No 35
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=78.75 E-value=1.1e+02 Score=33.69 Aligned_cols=256 Identities=14% Similarity=0.130 Sum_probs=156.0
Q ss_pred HHHHHHHHhhcc-----cCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHH
Q 008341 201 ARDIADRLLPAW-----NTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVEL 275 (569)
Q Consensus 201 A~eLadrLlpAF-----dTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L 275 (569)
+.-+-|.+||-| |++.|--+..+... |.+..+.-. ..-.. .-..--|...+.+-..+-+.++|.+-++.+
T Consensus 13 ~~~l~~~~lp~w~~~g~d~~~GGffe~l~~d-G~~~~~~~r-r~~~~---~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~ 87 (388)
T COG2942 13 LRWLDDDALPFWLNAGVDTEGGGFFEALDRD-GQILDETDR-RLRVQ---ARQVYCFAVAGLLGWRGPWLDAVAHGIAYL 87 (388)
T ss_pred HHHHHHHhhhhhcccCcCCCCCCceeeeccC-CccccCCCc-eeeee---hhHHHHHHHHHHhcCCccHHHHHHhHHHHH
Confidence 344556677755 44555555555443 333331100 01111 123456777777777888999999999999
Q ss_pred hh-cCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCe
Q 008341 276 NK-TFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFT 354 (569)
Q Consensus 276 ~~-~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~ 354 (569)
.+ .+.+.|-+-..++.+.+ ... -|....++.|==.-.-++.+.|..+ ..+|-.++++-+.+++.+...+-..
T Consensus 88 ~~~~R~~~gg~~~~~~~dg~-~~D--at~d~Y~haFallA~A~~a~a~~~~----a~~~~~~a~~~l~~~~~~~~~pl~~ 160 (388)
T COG2942 88 ARVGRDPEGGWYFALDNDGG-PVD--ATKDLYGHAFALLAAAHAATAGPPR----ADELLDEALDVLERRFWREEHPLGG 160 (388)
T ss_pred HhcCcCCCCCeEEEecCCCC-ccc--ccHhHHHHHHHHHHHHHHHhcCChh----HHHHHHHHHHHHHHHHhhhcCCccc
Confidence 98 45567777777765543 332 2333444555444455666666544 6788899999888888665432222
Q ss_pred eeeccCCC---cccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecC------
Q 008341 355 YICEKNGD---SLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRD------ 425 (569)
Q Consensus 355 ~v~~~~g~---~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~------ 425 (569)
|.-+..+. ..++.|.-+.+|+..+-+.| ...+++.|.+|++--..=.....+|+..|.|.-+-
T Consensus 161 ~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~--------~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~f 232 (388)
T COG2942 161 FEEDNPGSAPLGSNPHMHLLEAMLAAYEATG--------EKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGF 232 (388)
T ss_pred ccccCCCCCccCCCcchHHHHHHHHHHhccC--------chhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCc
Confidence 22222111 23456665666665555544 35788899999886665555678999999876321
Q ss_pred -------CCc-------------------------------------------cccccCCCCC--------chhHHHHHH
Q 008341 426 -------GQD-------------------------------------------MSVGTSWNIL--------RPETVESLF 447 (569)
Q Consensus 426 -------~~~-------------------------------------------~~~~~~~y~L--------RPE~IESlf 447 (569)
|.. +.......+. .-|.+++..
T Consensus 233 rg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ 312 (388)
T COG2942 233 RGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAV 312 (388)
T ss_pred ccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHH
Confidence 100 0000111111 228999999
Q ss_pred HHHhhcC-cchHHHHHHHHHHHHHHHcccC
Q 008341 448 YLWRLTG-NKTYKEWGWNIFQAFEKNSRIE 476 (569)
Q Consensus 448 yLyR~TG-D~~yre~gW~if~ai~k~~r~~ 476 (569)
.|.-.|| +..|-+|.-.++..+-.|..++
T Consensus 313 ala~~~~~~~~y~~~~~R~~~~~~~hl~d~ 342 (388)
T COG2942 313 ALAETTGARERYWQWYARAWDYLWWHLDDP 342 (388)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999 9999999999999988888763
No 36
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=78.38 E-value=1.1 Score=49.92 Aligned_cols=139 Identities=22% Similarity=0.294 Sum_probs=81.4
Q ss_pred HHHHHHHHHhHhhccCch--hhhHHHHhcCCCCCChhHHHHHHHHHHhhcCCCCC------cc-ccccchhhhhccccce
Q 008341 117 DAMIHAWSSYEKYAWGQD--ELQLLYSMCLFWRISDYSFSSEFMWIANSLDFNKS------YD-ASVFETTIRVVGGLLS 187 (569)
Q Consensus 117 ~af~haw~~Y~~~Awg~D--EL~PL~IMgl~~~~~~eEF~~A~~~V~~~ldF~~~------~~-vsvFEttIR~LGGLLS 187 (569)
+--..+-++|.+|||-.+ +++|||-=|- + + ..+.|..| ++ +.-+...--+|=.++-
T Consensus 331 ~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~-----d---------l-tgy~l~RdGYYG~KGtvl~~~p~~~~yll~~vr 395 (557)
T PF06917_consen 331 TWAIDGLKAYYRYAYDEENNEIRPMWNDGQ-----D---------L-TGYRLPRDGYYGKKGTVLKPFPADPDYLLPYVR 395 (557)
T ss_dssp HHHHHHHHHHHHHHEETTTTEE--EETTSE-----B-----------TTEE-SS-BTTB-TT-EE--EE--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCceeecccCCc-----C---------C-cCcccccccccCCCCCeeccccCchhHhHHHHH
Confidence 333445667778888554 7888887665 1 1 12344444 23 4566777778888999
Q ss_pred eeccCCChhHHHHHHHHHHHH-hhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHH
Q 008341 188 AYDLSGDKVFLEKARDIADRL-LPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQ 266 (569)
Q Consensus 188 AY~LSgd~~lL~KA~eLadrL-lpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~ 266 (569)
||-+|+|+.|-..|..++.+. |-...+++|-. ..+|..+. .++. -+.+-...|.+.|++++|.+
T Consensus 396 a~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~-~~~~~~~~-------------~~sp-~~L~allEL~~atq~~~~l~ 460 (557)
T PF06917_consen 396 AYRLSRDPELWDLARTMAHHFGLGDIGNAAGKE-PRVNMQTD-------------NASP-YLLFALLELYQATQDARYLE 460 (557)
T ss_dssp HHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS--EE-TT------------------H-HHHHHHHHHHHHH--HHHHH
T ss_pred HHHcCCCHHHHHHHHHHHhhcCcccccCccccc-cccccCCC-------------CCCH-HHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999998874 33344444432 12333321 1111 13456778999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCc
Q 008341 267 KAEKVIVELNKTFPADGLL 285 (569)
Q Consensus 267 ~a~~i~~~L~~~~~~~GL~ 285 (569)
.|+++-+.|.++.-..|||
T Consensus 461 lA~~~g~~l~~~~~~~GlF 479 (557)
T PF06917_consen 461 LADQVGENLFEQHFHRGLF 479 (557)
T ss_dssp HHHHHHHHHHHHHEETTEE
T ss_pred HHHHHHHHHHHHHccCcee
Confidence 9999999999966567775
No 37
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=75.17 E-value=11 Score=41.03 Aligned_cols=137 Identities=27% Similarity=0.397 Sum_probs=83.7
Q ss_pred hhccccceeeccCCChhHHHHHHHHHHHHhhcc-cCCCCCCc----ceeecCCCCC---CCCC----C------------
Q 008341 180 RVVGGLLSAYDLSGDKVFLEKARDIADRLLPAW-NTRTGIPY----NVINLAHGNP---HNPS----W------------ 235 (569)
Q Consensus 180 R~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAF-dTptGiP~----~~iNl~~g~~---~~~~----~------------ 235 (569)
-.+-.+|.+|+.++++..+++|.+||+.++.-| |..+|.=. ...|+.+|.. .+|+ |
T Consensus 178 Hl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~ 257 (388)
T COG2942 178 HLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG 257 (388)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhc
Confidence 344568999999999999999999999998866 56666432 2233333222 1111 0
Q ss_pred --------------------C--CCCcc--ccccccc---------hhhH----HHHHHHhC-CchHHHHHHHHHHHHhh
Q 008341 236 --------------------T--GGESI--LADSGTE---------QLEL----IALSQRTG-DPKYRQKAEKVIVELNK 277 (569)
Q Consensus 236 --------------------~--~~~s~--lAe~GSl---------~LEF----~~LS~lTG-d~kY~~~a~~i~~~L~~ 277 (569)
. .+..+ +..-|+. |-|. ..|+..|| +.+|.+-..|+.+.+++
T Consensus 258 ~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~R~~~~~~~ 337 (388)
T COG2942 258 RAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYARAWDYLWW 337 (388)
T ss_pred hhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 0 00000 1111111 1121 34888999 99999999999999998
Q ss_pred c--CCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHH
Q 008341 278 T--FPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWI 319 (569)
Q Consensus 278 ~--~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~i 319 (569)
. .+..|++=..+|+++-... -.-++.+..||.-+.-.|.
T Consensus 338 hl~d~~~G~W~~~l~~dg~~~~---~~k~~~~ktfYH~~~A~~~ 378 (388)
T COG2942 338 HLDDPEYGLWFDKLDEDGEVLL---TLKPGPAKTFYHILRACLE 378 (388)
T ss_pred hcCCCcCCcchhhcCCCCceec---ccCCCCcchhHHHHHHHHH
Confidence 3 4556887777776652211 0135566778876655554
No 38
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=73.19 E-value=21 Score=38.38 Aligned_cols=245 Identities=19% Similarity=0.212 Sum_probs=137.4
Q ss_pred ccccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCC
Q 008341 182 VGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGD 261 (569)
Q Consensus 182 LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd 261 (569)
|=|+.-+|+-|+|+.+|+-.+..+|-.+- ..|+|-..||-- .+. +=+..|.+-|||
T Consensus 42 lyGv~~~~eAT~d~~yl~~l~~~~d~~i~----~~g~~~~~id~i---------------~~g-----~~L~~L~e~T~~ 97 (357)
T COG4225 42 LYGVARAYEATGDAEYLDYLKTWFDEQID----EGGLPPRNIDHI---------------AAG-----LTLLPLYEQTGD 97 (357)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhhhc----cCCCCccchhhh---------------ccC-----ceeeehhhhhCC
Confidence 67899999999999999999999988763 234544333211 111 225678999999
Q ss_pred chHHHHHHHHHHHHhhc-CCCCCCcceeecCCCCCCCCCeeeecccCchHH---HHHHHHHHhcCCCCCcchHHHHHHHH
Q 008341 262 PKYRQKAEKVIVELNKT-FPADGLLPIYISPDRGTPSYSTITFGAMGDSFY---EYLLKVWIQGNKTSAVKPYRDMWETS 337 (569)
Q Consensus 262 ~kY~~~a~~i~~~L~~~-~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyY---EYLLK~~iL~g~~~~~~~~~~my~~a 337 (569)
|+|..+|.+..+.+... +...|-+-..+.---.-|. |+.| =.++|.-.++|+.+ .++++
T Consensus 98 ~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~----------DtL~Ma~~F~ak~g~~~~~~e-------~~d~~ 160 (357)
T COG4225 98 PRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWL----------DTLYMAGLFLAKYGQVTGRPE-------YFDEA 160 (357)
T ss_pred HHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhh----------cchhhhhHHHHHHHHHhCCHH-------HHHHH
Confidence 99999999999988873 3345544333321111233 4444 36789999999876 23333
Q ss_pred HH---HHHHhccccCCCCCeeeeccCCCcccccccccc---cccc---hhhhhhc--C--CCCCCCchHHHHHHHHHHHH
Q 008341 338 MK---GLLSLVRRSTPSSFTYICEKNGDSLIDKMDELA---CFAP---GMIALGS--S--GYGPGDSEKFLSLAEELAWT 404 (569)
Q Consensus 338 ~~---~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLs---CF~p---GmlaLGa--~--~~~~~~~~~~l~lA~~L~~t 404 (569)
+. ...++++- +..++-| ..+......++..+.+ .||+ |-.++.- . ..+. +.+.-..+. ++...
T Consensus 161 ~~QF~~~~~~l~D-p~TGL~Y-H~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~-~~~~r~~l~-~~l~d 236 (357)
T COG4225 161 LYQFSLHEKYLRD-PETGLYY-HGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPE-DHPDRRELL-NVLRD 236 (357)
T ss_pred HHHHHHHHHHccC-CCcCceE-EeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCC-CCchHHHHH-HHHHH
Confidence 32 22334432 2246644 5444444334444443 3553 2222111 0 1121 122222222 23333
Q ss_pred HHHh---hccCCCCccceeEeecCCCcccccc--CCCCCchhHHHHHHHHHhhcC-------cchHHHHHHHHHHHHHHH
Q 008341 405 CYNF---YQSTPTKLAGENYFFRDGQDMSVGT--SWNILRPETVESLFYLWRLTG-------NKTYKEWGWNIFQAFEKN 472 (569)
Q Consensus 405 C~~~---y~~t~tGl~PE~~~f~~~~~~~~~~--~~y~LRPE~IESlfyLyR~TG-------D~~yre~gW~if~ai~k~ 472 (569)
|... |++ .+||==-+ ..+ +.+ =||+==|.-++|-+-. +++|...+-+.++++..+
T Consensus 237 ~v~al~r~Qd-e~GlW~ti----------LDd~~~~s--y~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~ 303 (357)
T COG4225 237 LVDALIRYQD-ESGLWHTI----------LDDGRPGS--YLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGH 303 (357)
T ss_pred HHHHHHHhhc-cccchhhh----------hccCCCCC--chhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhh
Confidence 3322 222 33431110 111 111 2588888999998865 899999999999999886
Q ss_pred cccCc--Ccccccc
Q 008341 473 SRIES--GYVGLKD 484 (569)
Q Consensus 473 ~r~~~--Gya~l~d 484 (569)
.-.+. |-.++..
T Consensus 304 i~~~g~~g~vs~~~ 317 (357)
T COG4225 304 IDEEGEVGGVSLGT 317 (357)
T ss_pred cccccccceeecCc
Confidence 55432 5554443
No 39
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=71.26 E-value=15 Score=39.37 Aligned_cols=134 Identities=19% Similarity=0.139 Sum_probs=73.6
Q ss_pred eeeccC-CChhHHHHHHHHHHHHhhcccC-CCC--CCcce-----eec--CCCCCCCCCCCCCCccccccccchhhHHHH
Q 008341 187 SAYDLS-GDKVFLEKARDIADRLLPAWNT-RTG--IPYNV-----INL--AHGNPHNPSWTGGESILADSGTEQLELIAL 255 (569)
Q Consensus 187 SAY~LS-gd~~lL~KA~eLadrLlpAFdT-ptG--iP~~~-----iNl--~~g~~~~~~~~~~~s~lAe~GSl~LEF~~L 255 (569)
.+|... .++..++.+++..+.+..-|.. .+| .|... ++. ..+....+.|-+|..-++ +-+..+
T Consensus 183 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~------~~l~~~ 256 (382)
T cd04793 183 LAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIA------RALQLA 256 (382)
T ss_pred HHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHH------HHHHHH
Confidence 344445 6788888888888877766643 222 12111 111 112222345655443332 336677
Q ss_pred HHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCCCcchHHHHHH
Q 008341 256 SQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTSAVKPYRDMWE 335 (569)
Q Consensus 256 S~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~~~~~~~~my~ 335 (569)
++.++|+.|.+.+.++++.+.+.....+ +..+..+..+..+ -.+.|++.+-.+++.+ +.+...
T Consensus 257 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~lChG~~G-------~~~~l~~~~~~~~~~~----~~~~a~ 319 (382)
T cd04793 257 GKALDDQKLQEAAEKILKAALKDKKQLS------KLISPTLCHGLAG-------LLFIFYLLYKDTNTNE----FKSALE 319 (382)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhChhhhc------cCCCCCcCccHHH-------HHHHHHHHHHHhCCcH----HHHHHH
Confidence 8889999999999999998876321111 1111123332222 2377888888888654 444444
Q ss_pred HHHHHHHH
Q 008341 336 TSMKGLLS 343 (569)
Q Consensus 336 ~a~~~i~~ 343 (569)
..++.+.+
T Consensus 320 ~~~~~~l~ 327 (382)
T cd04793 320 YLLNQIIS 327 (382)
T ss_pred HHHHHHHH
Confidence 44444333
No 40
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=71.12 E-value=1.4e+02 Score=34.50 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhccCchhhhH---HHHhcCCCCCChhHHHHHHHHHHhhcCCCCC--------------c-cccccchhhhhccccceee
Q 008341 128 KYAWGQDELQL---LYSMCLFWRISDYSFSSEFMWIANSLDFNKS--------------Y-DASVFETTIRVVGGLLSAY 189 (569)
Q Consensus 128 ~~Awg~DEL~P---L~IMgl~~~~~~eEF~~A~~~V~~~ldF~~~--------------~-~vsvFEttIR~LGGLLSAY 189 (569)
.++|+.|-..- |..+|. .++-.+..+|+.+...-+-. . .++.=|+.- +|=++-..|
T Consensus 293 ~y~W~RD~~~~a~Al~~~G~-----~~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~-~l~al~~y~ 366 (616)
T TIGR01577 293 AYCWGRDASYIATALDRAGY-----HDRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDETGS-ILWAMDQHY 366 (616)
T ss_pred ceeccccHHHHHHHHHHCCC-----HHHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccchhH-HHHHHHHHH
Q ss_pred ccCCChhHHHHH----HHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCc---
Q 008341 190 DLSGDKVFLEKA----RDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDP--- 262 (569)
Q Consensus 190 ~LSgd~~lL~KA----~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~--- 262 (569)
..++|..+++.- +.+++.+..-.+. ++|.+..++= .++......+.|-+=.-......|++..||+
T Consensus 367 ~~t~d~~~~~~~~~~v~~a~~fl~~~~~~--~l~~~~~~lW-----Eer~G~~~~t~a~~~aAL~~aa~lA~~lGd~~~a 439 (616)
T TIGR01577 367 RLTNDRAFLEEIWESVQKAAQYLILFIDP--ETPLPCRDLW-----EEREGVFTYTASAVYGGLDAAAAVADKLGEKRLA 439 (616)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCccc-----eecCCccCccHHHHHHHHHHHHHHHHHcCChHHH
Q ss_pred -hHHHHHHHHHHHHhh--cCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcC---CCCCcchHHHHHHH
Q 008341 263 -KYRQKAEKVIVELNK--TFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGN---KTSAVKPYRDMWET 336 (569)
Q Consensus 263 -kY~~~a~~i~~~L~~--~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g---~~~~~~~~~~my~~ 336 (569)
+|.+.|+++.+.+.+ -.+..|.+-..++... ..-++.+. |+=..+-+| -.| .+...
T Consensus 440 ~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~-----~~~~vDaS-------lL~l~~~~g~l~~~D------pr~v~ 501 (616)
T TIGR01577 440 QNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMV-----LDKTIDIS-------ILGISVPFNLIAPDD------ERMVK 501 (616)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCC-----CCCcccHH-------HHhHHHhcCCCCCCC------hHHHH
Q ss_pred HHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCch---------HHHHHHHHHHHHHHH
Q 008341 337 SMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSE---------KFLSLAEELAWTCYN 407 (569)
Q Consensus 337 a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~---------~~l~lA~~L~~tC~~ 407 (569)
.++.|.+.|....+++ +..+.+..-... ..|+.-++-|+-......... .+++-|+++.+.|..
T Consensus 502 Tv~~I~~~L~~~~~gg---i~RY~~D~y~~g----~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~ 574 (616)
T TIGR01577 502 MAEAIEKHLTSPIVGG---IKRYENDPYVGG----NPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMD 574 (616)
T ss_pred HHHHHHHHhcccCCCe---eeCCCCCCCCCC----CcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHh
Q ss_pred hhccCCCCccceeEeecCCC
Q 008341 408 FYQSTPTKLAGENYFFRDGQ 427 (569)
Q Consensus 408 ~y~~t~tGl~PE~~~f~~~~ 427 (569)
. .+++|+.||.++-..|.
T Consensus 575 ~--~~~~Gll~Eqvd~~~g~ 592 (616)
T TIGR01577 575 H--RTDLGLLPEQVDKETGK 592 (616)
T ss_pred c--CCCCCCCccccCCCCCC
No 41
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=65.18 E-value=36 Score=36.02 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=68.2
Q ss_pred cceeeccCCChhHHHHHHHHHHHHhhcccCCCC-CCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCch
Q 008341 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTG-IPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPK 263 (569)
Q Consensus 185 LLSAY~LSgd~~lL~KA~eLadrLlpAFdTptG-iP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~k 263 (569)
|+..+...+|+.+++.+++..+.+.... .+.| .|.. ++. .+......|=.|. .| +.+-+..+++.++|++
T Consensus 174 L~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~g~w~~~-~~~-~~~~~~~~wChG~-----~G-i~~~l~~~~~~~~~~~ 244 (343)
T cd04794 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQ-FPSGNFPSS-LGN-RKRDRLVQWCHGA-----PG-IVYLLAKAYLVFKEEQ 244 (343)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHHHhh-ccCCCCCCc-cCC-CCCCccccccCCC-----ch-HHHHHHHHHHHhCCHH
Confidence 5566676788999999999888887653 3334 3321 110 0011112243333 22 2344678889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCC
Q 008341 264 YRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTS 325 (569)
Q Consensus 264 Y~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~ 325 (569)
|.+.+.++.+.+++. |+.- .+..+..+..+. -+.|++.|-.+++.+
T Consensus 245 ~~~~~~~~~~~~~~~----g~~~-----~~~~lCHG~~G~-------~~~lL~~~~~~~~~~ 290 (343)
T cd04794 245 YLEAAIKCGELIWKR----GLLK-----KGPGLCHGIAGN-------AYAFLLLYRLTGDLK 290 (343)
T ss_pred HHHHHHHHHHHHHHh----CCcc-----CCCccccCccch-------HHHHHHHHHHhCcHH
Confidence 999999999988864 2221 111122222222 366788898888644
No 42
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=64.29 E-value=1.8e+02 Score=32.50 Aligned_cols=186 Identities=19% Similarity=0.248 Sum_probs=104.3
Q ss_pred hCCchHHHHHHHHHHHHhhcCCC-----CCCcceeecCCCCCCCCCeeeeccc-CchHHHHHHHHHHhcCCCCCcchHHH
Q 008341 259 TGDPKYRQKAEKVIVELNKTFPA-----DGLLPIYISPDRGTPSYSTITFGAM-GDSFYEYLLKVWIQGNKTSAVKPYRD 332 (569)
Q Consensus 259 TGd~kY~~~a~~i~~~L~~~~~~-----~GL~p~~id~~tg~~~~~~~t~Ga~-~DSyYEYLLK~~iL~g~~~~~~~~~~ 332 (569)
||-..=++++.+++.+-|+-.++ +-|-|..- ..-.| +++|.- .|| |=-++|++ +.+
T Consensus 89 tg~nerq~avv~aF~haW~gYkKyawGhD~l~Pvs~--~~~d~----fglGltiVDs----lDT~~iMg--------le~ 150 (546)
T KOG2431|consen 89 TGLNERQKAVVDAFLHAWSGYKKYAWGHDELKPVSQ--SFSDW----FGLGLTIVDS----LDTAMIMG--------LED 150 (546)
T ss_pred CchhHHHHHHHHHHHHHHhhhhhhcccccccccchh--ccccc----ccccceEEec----hhHHHHhh--------hHH
Confidence 33344467888999999984433 34544421 11112 233332 344 33345554 335
Q ss_pred HHHHHHHHHHHhccccCCCCCeeeeccCCCcccccccccccccchhhhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccC
Q 008341 333 MWETSMKGLLSLVRRSTPSSFTYICEKNGDSLIDKMDELACFAPGMIALGSSGYGPGDSEKFLSLAEELAWTCYNFYQST 412 (569)
Q Consensus 333 my~~a~~~i~~ll~~~~~~~~~~v~~~~g~~~~~~m~hLsCF~pGmlaLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t 412 (569)
-+.++.+=|.+.|.......... +.. ----+||+|. |.+.. ...-+++-|.+|.+-..-.+ ++
T Consensus 151 e~~ea~~Wv~~~L~f~~~~~VNl--------FEt----TIRvLGGLLS--ayHLs--g~~~~L~kA~dlgdrLl~AF-~s 213 (546)
T KOG2431|consen 151 EFEEAREWVEKKLHFEKDRDVNL--------FET----TIRVLGGLLS--AYHLS--GDEMFLNKAEDLGDRLLPAF-SS 213 (546)
T ss_pred HHHHHHHHHHhhcccccccceeh--------hhh----hHHHHhhhhh--hhccc--cchhHHHHHHHHHHHHHHhh-cC
Confidence 67778877887665432211110 111 1123577654 32222 23457777777777777777 78
Q ss_pred CCCccceeEeecCCCccccccCCCCCchhHHHH------HHHHHhhcCcchHHHHHHHHHHHHHHHcccC-cCcccc
Q 008341 413 PTKLAGENYFFRDGQDMSVGTSWNILRPETVES------LFYLWRLTGNKTYKEWGWNIFQAFEKNSRIE-SGYVGL 482 (569)
Q Consensus 413 ~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IES------lfyLyR~TGD~~yre~gW~if~ai~k~~r~~-~Gya~l 482 (569)
||++.=-.++...++...+ .|- --.-+.|- .=||=|+|||++|.+.+-+.++-|-+.-+.. .|-..|
T Consensus 214 ps~IPysdVnL~~~~A~~p--~~~-~~SStaEvttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi 287 (546)
T KOG2431|consen 214 PSPIPYSDVNLGTGTAHPP--RWT-GDSSTAEVTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPI 287 (546)
T ss_pred CCCCCcceeecCCCcccCC--CCC-CccchhhheeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeeeE
Confidence 9998877777776643111 000 00012221 2478899999999999999999998876655 354444
No 43
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=60.34 E-value=1.2e+02 Score=32.76 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCccccccchhhhh-ccc--cceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecC
Q 008341 150 DYSFSSEFMWIANSLDFNKSYDASVFETTIRV-VGG--LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLA 226 (569)
Q Consensus 150 ~eEF~~A~~~V~~~ldF~~~~~vsvFEttIR~-LGG--LLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~ 226 (569)
++-++...+|+...++ .++ .-+-+|-. .-| |+--|+-++|+.+|+.|+++|+.|+.-=-|.-|.-...++
T Consensus 55 ~~yl~~l~~~~d~~i~--~~g---~~~~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~-- 127 (357)
T COG4225 55 AEYLDYLKTWFDEQID--EGG---LPPRNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVK-- 127 (357)
T ss_pred HHHHHHHHHHHHhhhc--cCC---CCccchhhhccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccC--
Confidence 4555777778866443 222 11122221 122 5666788899999999999999998644455554332221
Q ss_pred CCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhh--cCCCCCCcceeecCCC-CCCCCCeee-
Q 008341 227 HGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNK--TFPADGLLPIYISPDR-GTPSYSTIT- 302 (569)
Q Consensus 227 ~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~--~~~~~GL~p~~id~~t-g~~~~~~~t- 302 (569)
.+ ..-|. ++ |=-+|.+ +.++++.||+|.|++-+.+-+..-.+ +-+..||+=.-.|.+. +.|.++..+
T Consensus 128 --~p-~Q~W~--Dt-L~Ma~~F---~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~ 198 (357)
T COG4225 128 --YP-HQMWL--DT-LYMAGLF---LAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGE 198 (357)
T ss_pred --ch-hHhhh--cc-hhhhhHH---HHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCC
Confidence 11 12242 12 2223333 67889999999999988887776666 3445699988888765 334433332
Q ss_pred --ecccCchHHHHHH-HHHHhcCC
Q 008341 303 --FGAMGDSFYEYLL-KVWIQGNK 323 (569)
Q Consensus 303 --~Ga~~DSyYEYLL-K~~iL~g~ 323 (569)
|=|++-+.|-+-| +.--+...
T Consensus 199 ~~fWaRg~gW~~mal~d~le~lp~ 222 (357)
T COG4225 199 PAFWARGNGWYAMALADLLELLPE 222 (357)
T ss_pred ceeeecccchHHHHHHHHHHhCCC
Confidence 4456667765543 33334443
No 44
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=54.74 E-value=20 Score=37.81 Aligned_cols=55 Identities=29% Similarity=0.304 Sum_probs=41.5
Q ss_pred cchhhHHHHHHH---hCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeee
Q 008341 247 TEQLELIALSQR---TGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITF 303 (569)
Q Consensus 247 Sl~LEF~~LS~l---TGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~ 303 (569)
.-+-|+..|+++ |+|++|.++++++.+.|.+...+.|=+|.+.... +.+ ..+|||
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~-~~Y-~~~ITf 102 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLK-GGY-SDAITY 102 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCc-CCc-cccccc
Confidence 334566666655 9999999999999999999877889999987444 333 245665
No 45
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=49.87 E-value=4.7 Score=41.94 Aligned_cols=150 Identities=22% Similarity=0.237 Sum_probs=79.7
Q ss_pred ccchhhhhccccceeeccCCChhHHHHHHHHHHHHhhcccCC--CCCCcceeecCCCCCCCCCCCCCCccccccccchhh
Q 008341 174 VFETTIRVVGGLLSAYDLSGDKVFLEKARDIADRLLPAWNTR--TGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLE 251 (569)
Q Consensus 174 vFEttIR~LGGLLSAY~LSgd~~lL~KA~eLadrLlpAFdTp--tGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LE 251 (569)
+.--..=++--|+..|+..+++.+++.+.+++++|+.....- ...|...-.. .+ ..+.++..|.+ .+.+=
T Consensus 104 ~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~G~aHG~~------Gi~~~ 175 (355)
T PF05147_consen 104 LLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG-FINLGFAHGIA------GILYA 175 (355)
T ss_dssp TTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT-BEE-STTTSHH------HHHHH
T ss_pred hhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC-CccCCccccHH------HHHHH
Confidence 444444445556777777789999999999999999877641 1111100000 00 00111111222 12233
Q ss_pred HHHHH-HHhCCchHHHHHHHHHHHHhhcCC-CCCCcceeecCC----CCCCCCCeeeecccCchHHHHHHHHHHhcCCCC
Q 008341 252 LIALS-QRTGDPKYRQKAEKVIVELNKTFP-ADGLLPIYISPD----RGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTS 325 (569)
Q Consensus 252 F~~LS-~lTGd~kY~~~a~~i~~~L~~~~~-~~GL~p~~id~~----tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~ 325 (569)
+.++. +.|++++|.+.++++.+.+.+... .+|-+|...+.. ...|+.+..+++- -+++.+-..++
T Consensus 176 L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~-------~~~~~~~~~~~-- 246 (355)
T PF05147_consen 176 LLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILL-------ALLKAYKILDD-- 246 (355)
T ss_dssp HCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHH-------HHHHHHHHCT---
T ss_pred HHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHH-------HHHHHHHhhch--
Confidence 55677 699999999999999999999542 344488887766 5667766555532 12445545443
Q ss_pred CcchHHHHHHHHHHHHH
Q 008341 326 AVKPYRDMWETSMKGLL 342 (569)
Q Consensus 326 ~~~~~~~my~~a~~~i~ 342 (569)
+.+.+...++++.+.
T Consensus 247 --~~~~~~~~~~~~~~~ 261 (355)
T PF05147_consen 247 --EEYDEEAEQALESIL 261 (355)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 334455555555443
No 46
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=46.14 E-value=4.4e+02 Score=28.98 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=83.0
Q ss_pred HhcCCCCCChhHHHHHHHHHHhhcCCCCC--------------ccccccchh------hhhccccceeeccCCChhHHHH
Q 008341 141 SMCLFWRISDYSFSSEFMWIANSLDFNKS--------------YDASVFETT------IRVVGGLLSAYDLSGDKVFLEK 200 (569)
Q Consensus 141 IMgl~~~~~~eEF~~A~~~V~~~ldF~~~--------------~~vsvFEtt------IR~LGGLLSAY~LSgd~~lL~K 200 (569)
++|- ++.|++..+|..+++.=..+ +...|-+.+ +=+-=.||=|..+=+++.+++.
T Consensus 66 ~a~D-----r~~Fd~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~ 140 (376)
T PRK11097 66 VAND-----RAAFDKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTAL 140 (376)
T ss_pred HcCC-----HHHHHHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHH
Confidence 3788 99999999999987642211 111122221 1111124444444468889999
Q ss_pred HHHHHHHHhhcccC-CCCCCcceeecC-CCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc
Q 008341 201 ARDIADRLLPAWNT-RTGIPYNVINLA-HGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT 278 (569)
Q Consensus 201 A~eLadrLlpAFdT-ptGiP~~~iNl~-~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (569)
|+.|...|+.-=-. -+|+ ...+.+. .|-.....|. .+.+-. +.-=|..+++.++|+...+.++..++.|.+.
T Consensus 141 A~~ll~~I~~~ev~~~~g~-g~~LlPG~~gF~~~~~~~---~NPSY~--~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~ 214 (376)
T PRK11097 141 GTALLKRIAREEVVTVPGL-GSMLLPGPVGFADDGSWR---LNPSYL--PPQLLRRFARFLPGGPWAALAATNARLLLET 214 (376)
T ss_pred HHHHHHHHHHhcccccCCC-ceeeccccccccCCCCCe---ECcccc--cHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 99999999873111 1232 0011111 1111111111 111111 1122777899999999999999999999885
Q ss_pred CCCCCCcceeecCCCC
Q 008341 279 FPADGLLPIYISPDRG 294 (569)
Q Consensus 279 ~~~~GL~p~~id~~tg 294 (569)
. ..||+|+.+..+.+
T Consensus 215 a-~tGL~PDWv~~~~~ 229 (376)
T PRK11097 215 A-PKGFSPDWVRYQKG 229 (376)
T ss_pred c-ccCCCCcceeEcCC
Confidence 5 78999999988754
No 47
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=45.64 E-value=30 Score=37.09 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=52.5
Q ss_pred cceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008341 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (569)
Q Consensus 185 LLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (569)
|+.++...+|+.+.+.|.++.+.++....... ...++.+ |-.-+|- ..-|.++++.|||+.|
T Consensus 253 l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l-----ChG~~G~-~~~l~~~~~~~~~~~~ 314 (382)
T cd04793 253 LQLAGKALDDQKLQEAAEKILKAALKDKKQLS------------KLISPTL-----CHGLAGL-LFIFYLLYKDTNTNEF 314 (382)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhChhhhc------------cCCCCCc-----CccHHHH-HHHHHHHHHHhCCcHH
Confidence 45667777899999999999888775432110 0011221 2222222 2447899999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 008341 265 RQKAEKVIVELNKTFPA 281 (569)
Q Consensus 265 ~~~a~~i~~~L~~~~~~ 281 (569)
.+.|++..+.+.+....
T Consensus 315 ~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 315 KSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999988875433
No 48
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=43.55 E-value=66 Score=25.67 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCCcCCC-CCCCCCCcccccCcccccccchhHHHHHHHHHHHHHHHHhcccccch
Q 008341 1 MARNRSS-SSSSSSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTLVRE 54 (569)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 54 (569)
|||++.. --...++.|-. ..+=+.+.++|+|+++|.+.....+
T Consensus 1 Makkk~~~~~~~~~~~Wlv-----------tyaDlmTLLl~fFVlL~s~s~~d~~ 44 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLV-----------TYADLMTLLLAFFVLLFSMSSVDKE 44 (58)
T ss_pred CCCCCCCCCCCCCCccHHH-----------HHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 8888861 11123456632 2244667777888888888776533
No 49
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=42.65 E-value=53 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=10.3
Q ss_pred cccchhhhhhhhhHHHHHHHHH
Q 008341 50 TLVREHEVELSELNEEVTQLRN 71 (569)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~ 71 (569)
.-.+...-|+..+++++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~ 45 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQK 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344544455555554444444
No 50
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=41.73 E-value=34 Score=33.86 Aligned_cols=81 Identities=30% Similarity=0.468 Sum_probs=50.0
Q ss_pred hhccc----cceeeccCC---C---hhHHHHHHHHHHHHhhcccCCCCCCcceeecCCC---CC-CCCCCCCCCcccccc
Q 008341 180 RVVGG----LLSAYDLSG---D---KVFLEKARDIADRLLPAWNTRTGIPYNVINLAHG---NP-HNPSWTGGESILADS 245 (569)
Q Consensus 180 R~LGG----LLSAY~LSg---d---~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g---~~-~~~~~~~~~s~lAe~ 245 (569)
=||-| |++-||+.. + ..+.++..+=-..+||.||+.++--| ++++- .+ .-.+|.+..
T Consensus 92 ~VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Y---dl~h~~~~~~~~~a~~~YH~------ 162 (189)
T PF06662_consen 92 YVLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLYDTGSWSRY---DLRHFTLGNAPNIARWDYHR------ 162 (189)
T ss_pred EEeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhcCCCchh---hccccccccCcCcCcchHHH------
Confidence 36666 556677663 2 34666666666778999999776444 33321 11 111122222
Q ss_pred ccchhhHHHHHHHhCCchHHHHHHH
Q 008341 246 GTEQLELIALSQRTGDPKYRQKAEK 270 (569)
Q Consensus 246 GSl~LEF~~LS~lTGd~kY~~~a~~ 270 (569)
.-+--+..|+.+||||.|.+.|++
T Consensus 163 -lHi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 163 -LHIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 223457889999999999998876
No 51
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.55 E-value=1e+02 Score=35.19 Aligned_cols=131 Identities=19% Similarity=0.214 Sum_probs=73.1
Q ss_pred hHHHHHH-HHHHhcCCCCCcchHHHHHHHHHHHHHHhccccCCCCCeeeeccC-----C---Ccccccccccccccchhh
Q 008341 309 SFYEYLL-KVWIQGNKTSAVKPYRDMWETSMKGLLSLVRRSTPSSFTYICEKN-----G---DSLIDKMDELACFAPGMI 379 (569)
Q Consensus 309 SyYEYLL-K~~iL~g~~~~~~~~~~my~~a~~~i~~ll~~~~~~~~~~v~~~~-----g---~~~~~~m~hLsCF~pGml 379 (569)
+++.+|- -.|.|-++.+ +.+.+.-.+.++.+.++- ..++ ||+.+- + +.+.. -..|-| .|=|
T Consensus 67 dlgkwlea~A~~l~~~~d--p~Lekr~D~vi~~~a~~Q---dedG--Yl~~~~q~~~pe~Rw~nlr~-~HelY~--aghL 136 (589)
T COG3533 67 DLGKWLEAAAYSLANKGD--PELEKRIDEVVEELARAQ---DEDG--YLGGWFQADFPEERWGNLRP-NHELYC--AGHL 136 (589)
T ss_pred cHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhh---ccCC--cccceeeccCchhhhhcccc-chHHHH--hHHH
Confidence 4555553 2466777778 767766666666555431 1222 444321 0 11111 111333 2333
Q ss_pred hhhcCC-CCCCCchHHHHHHHHHHHHHHHhhccCCCCccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcCcchH
Q 008341 380 ALGSSG-YGPGDSEKFLSLAEELAWTCYNFYQSTPTKLAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTGNKTY 458 (569)
Q Consensus 380 aLGa~~-~~~~~~~~~l~lA~~L~~tC~~~y~~t~tGl~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TGD~~y 458 (569)
.-|+.. +......+.++++..+++-- .|.++|+.= ....|.--||+=|.+-=|||+||||+|
T Consensus 137 ieg~va~~qaTGkr~lldV~~rlADhi-------~tvfgp~~~----------q~~g~~gH~eielAl~~Ly~~Tg~~rY 199 (589)
T COG3533 137 IEGGVAAHQATGKRRLLDVVCRLADHI-------ATVFGPEED----------QVPGYCGHPEIELALAELYRLTGDQRY 199 (589)
T ss_pred HhhhhHHHHhhCcchHHHHHHHHHHhh-------hhhcCcccc----------ccccccCCCchhHHHHHHHHHhcChHH
Confidence 333321 11111346677776666533 356677651 234578889999999999999999999
Q ss_pred HHHHHHHH
Q 008341 459 KEWGWNIF 466 (569)
Q Consensus 459 re~gW~if 466 (569)
.+.|--..
T Consensus 200 L~LA~~Fi 207 (589)
T COG3533 200 LDLARRFI 207 (589)
T ss_pred HHHHHHHH
Confidence 99987643
No 52
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=40.55 E-value=15 Score=36.90 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=21.7
Q ss_pred cCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHH
Q 008341 433 TSWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQA 468 (569)
Q Consensus 433 ~~~y~LRPE~IESlfyLyR~TGD~~yre~gW~if~a 468 (569)
..+|-|| |||.||||||....|.=.-.
T Consensus 29 ~GHyglR---------mYRqT~d~kYaaa~~~D~~r 55 (227)
T PF12060_consen 29 QGHYGLR---------MYRQTGDPKYAAAVWSDMAR 55 (227)
T ss_pred cchHHHH---------HHHHhccHHHHHHHHHHHHH
Confidence 4578766 89999999999999974433
No 53
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=39.55 E-value=1.4e+02 Score=32.05 Aligned_cols=141 Identities=22% Similarity=0.276 Sum_probs=85.4
Q ss_pred HHHhcCCCCCChhHHHHHHHHHHhhcCCCC----------Ccc--c----cccchhhhhccccceeeccCCC--hhHHHH
Q 008341 139 LYSMCLFWRISDYSFSSEFMWIANSLDFNK----------SYD--A----SVFETTIRVVGGLLSAYDLSGD--KVFLEK 200 (569)
Q Consensus 139 L~IMgl~~~~~~eEF~~A~~~V~~~ldF~~----------~~~--v----svFEttIR~LGGLLSAY~LSgd--~~lL~K 200 (569)
..+||- +++|++..+|..+++.-.. ++. + |-.+-=+.+-=+||=|...=++ ..++..
T Consensus 65 av~~~d-----~~~Fd~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~ 139 (342)
T PF01270_consen 65 AVLMDD-----RATFDRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAE 139 (342)
T ss_dssp HHHTTH-----HHHHHHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHH
T ss_pred HHHhCC-----HHHHHHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHH
Confidence 345888 9999999999998776211 111 1 3334445666667777666564 467888
Q ss_pred HHHHHHHHhhcccCCCCCCcceeecC-CCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhh-c
Q 008341 201 ARDIADRLLPAWNTRTGIPYNVINLA-HGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNK-T 278 (569)
Q Consensus 201 A~eLadrLlpAFdTptGiP~~~iNl~-~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~-~ 278 (569)
|+.+...++..-.. .| ...+.+. .|...+..+ .++++-.- .-=|..+.+.|+|+...+.+++..+.|.+ .
T Consensus 140 A~~~~~~i~~~~v~-~g--~~~llpG~~~f~~~~~~---~~npSY~~--~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 140 ALAIINAIKTHEVN-PG--RYVLLPGDWGFNSDDYW---TTNPSYFM--PPAFRAFAAATGDPRWNEVADSSYALLQKAS 211 (342)
T ss_dssp HHHHHHHHHHHHEE-TT--EEEECSSSSSCBTTSEE---EEEGGGS---HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeC-CC--ceEEeccccccCCCCce---EeChhhcc--HHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Confidence 88888776553322 34 0111111 111111110 12222221 13377899999999999999999999888 4
Q ss_pred CCCCCCcceeecCC
Q 008341 279 FPADGLLPIYISPD 292 (569)
Q Consensus 279 ~~~~GL~p~~id~~ 292 (569)
.+..||+|+++..+
T Consensus 212 ~~~tGL~PDw~~~~ 225 (342)
T PF01270_consen 212 FPKTGLPPDWVVYD 225 (342)
T ss_dssp TTTTTB--SSEETT
T ss_pred ccCCCCCchheeec
Confidence 56789999999887
No 54
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=39.40 E-value=25 Score=30.57 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=23.2
Q ss_pred CCCcccccCcccccccchhHHHHHHHHHHHHH
Q 008341 12 SSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTL 43 (569)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 43 (569)
+++.+|.+||-.|++-++-+..+.++.++..+
T Consensus 20 tT~lFRavNfELy~kPNk~iM~~Gl~a~~~c~ 51 (86)
T PF14937_consen 20 TTTLFRAVNFELYVKPNKPIMAFGLIAITLCV 51 (86)
T ss_pred cchhhhhhCHHHhccCCchhhHHHHHHHHHHH
Confidence 45689999999999988877555554444433
No 55
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=39.20 E-value=10 Score=39.56 Aligned_cols=83 Identities=18% Similarity=0.363 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCCccee-ecCCCCCCCCCeeeeccc-CchHHHHHHHH--------HHhcCCCCCcchH
Q 008341 261 DPKYRQKAEKVIVELNKTFPADGLLPIY-ISPDRGTPSYSTITFGAM-GDSFYEYLLKV--------WIQGNKTSAVKPY 330 (569)
Q Consensus 261 d~kY~~~a~~i~~~L~~~~~~~GL~p~~-id~~tg~~~~~~~t~Ga~-~DSyYEYLLK~--------~iL~g~~~~~~~~ 330 (569)
||.|++.++++++.+.+..-..+|+|.. -+...|.|....-.++.. ...|.+||++- |+++|+.......
T Consensus 83 N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~ 162 (289)
T PF13204_consen 83 NPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDYFDTEKT 162 (289)
T ss_dssp ---HHHHHHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSS
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcC
Confidence 6999999999999998854444555554 122233343322233332 45688999875 4566666111446
Q ss_pred HHHHHHHHHHHHH
Q 008341 331 RDMWETSMKGLLS 343 (569)
Q Consensus 331 ~~my~~a~~~i~~ 343 (569)
.+.|.+..+.|++
T Consensus 163 ~~~w~~~~~~i~~ 175 (289)
T PF13204_consen 163 RADWDAMARGIKE 175 (289)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6788877777775
No 56
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=38.90 E-value=1.5e+02 Score=31.38 Aligned_cols=96 Identities=25% Similarity=0.274 Sum_probs=52.4
Q ss_pred cccchhhHH-HHHHHhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeec--ccCchHHHHHHHHHHhc
Q 008341 245 SGTEQLELI-ALSQRTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFG--AMGDSFYEYLLKVWIQG 321 (569)
Q Consensus 245 ~GSl~LEF~-~LS~lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~G--a~~DSyYEYLLK~~iL~ 321 (569)
+++.+|.|. ++-+.|+|++|.+++.+.++.|.+..-+.|=+|.+.-...| -..+|||- ++.+ --+-|...+--.
T Consensus 40 aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~--Y~~~ITfNDdam~~-vl~lL~~v~~~~ 116 (289)
T PF09492_consen 40 ATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG--YHDHITFNDDAMVN-VLELLRDVAEGK 116 (289)
T ss_dssp TTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG--GGGSEE-GGGHHHH-HHHHHHHHHCT-
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC--CCCceEEccHHHHH-HHHHHHHHHhhc
Confidence 444445443 45567899999999999999999966668999998755444 34567773 2221 234444444322
Q ss_pred CCCCCc-----chHHHHHHHHHHHHHH
Q 008341 322 NKTSAV-----KPYRDMWETSMKGLLS 343 (569)
Q Consensus 322 g~~~~~-----~~~~~my~~a~~~i~~ 343 (569)
++-+++ ..+++.++++++-|.+
T Consensus 117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~ 143 (289)
T PF09492_consen 117 GDFAFVDESLRARARAAVDKGIDCILK 143 (289)
T ss_dssp TTSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 322211 1345555666665554
No 57
>PRK09039 hypothetical protein; Validated
Probab=37.98 E-value=64 Score=34.76 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=33.8
Q ss_pred CCCcccccCcccccccchhHHHHHHHHHHHHHHHHhcccc-cchhhhhhhhhHHHHHHHHHHH
Q 008341 12 SSGKLRYCNPAYYLKRPKRLAMLLIVFVSVTLVVWDRQTL-VREHEVELSELNEEVTQLRNLL 73 (569)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (569)
+...|-- |+--=..|++++|+.|++|++.+-.++= ....+-|+..++.++.+|.+.|
T Consensus 12 ~~~~wpg-----~vd~~~~ll~~~~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L 69 (343)
T PRK09039 12 GVDYWPG-----FVDALSTLLLVIMFLLTVFVVAQFFLSREISGKDSALDRLNSQIAELADLL 69 (343)
T ss_pred CCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4467865 5655567888888888888876655432 1233334455555555555433
No 58
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=37.58 E-value=43 Score=36.00 Aligned_cols=149 Identities=23% Similarity=0.268 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHh---------------hccCchhhhH--H-HHhcCCCCCC----hhHHHHHHHHHHhhc
Q 008341 107 IDIQRKQKVKDAMIHAWSSYEK---------------YAWGQDELQL--L-YSMCLFWRIS----DYSFSSEFMWIANSL 164 (569)
Q Consensus 107 ~~~~rr~~Vk~af~haw~~Y~~---------------~Awg~DEL~P--L-~IMgl~~~~~----~eEF~~A~~~V~~~l 164 (569)
...++...|-+++..+=+.+.+ .=||.-.=.- | ++|.-.-.++ .+..+-.++++.+ .
T Consensus 179 i~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~-~ 257 (403)
T KOG2787|consen 179 IPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQ-N 257 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHH-c
Confidence 4455666677777766555543 3344432111 2 3344311222 2334556677765 4
Q ss_pred CCCCCccccccchhhh--hc----c------ccceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCC
Q 008341 165 DFNKSYDASVFETTIR--VV----G------GLLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHN 232 (569)
Q Consensus 165 dF~~~~~vsvFEttIR--~L----G------GLLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~ 232 (569)
.|. +++-..-|.+-| .+ | =|.=||..=.++.+|+-|.+.||.+-. .|+=-.-+-+-+|.+.+
T Consensus 258 rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~-----rGlLkkg~GichGvaGN 331 (403)
T KOG2787|consen 258 RFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWK-----RGLLKKGVGICHGVAGN 331 (403)
T ss_pred cCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----hhhhhcCCcccccccCc
Confidence 554 444333343222 11 1 155677777789999999999999643 24322112223333321
Q ss_pred CCCCCCCccccccccchhhHHHHHHHhCCchHHHHHHHHHHHHhhc
Q 008341 233 PSWTGGESILADSGTEQLELIALSQRTGDPKYRQKAEKVIVELNKT 278 (569)
Q Consensus 233 ~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY~~~a~~i~~~L~~~ 278 (569)
---|..|-++|||+||.-.|.+....+-+.
T Consensus 332 ----------------aYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 332 ----------------AYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred ----------------hhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 123899999999999999999999988874
No 59
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.44 E-value=77 Score=25.30 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcccc-cchhhhhhhhhHHHHHHHHHHHHHh
Q 008341 36 IVFVSVTLVVWDRQTL-VREHEVELSELNEEVTQLRNLLEEI 76 (569)
Q Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (569)
++|+.-+++.|....+ ...+..++.++++++.+++.+++++
T Consensus 26 ~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 26 IAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333444544333 2556677888888888888877543
No 60
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=29.18 E-value=39 Score=34.22 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.5
Q ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHHccc
Q 008341 446 LFYLWRLTGNKTYKEWGWNIFQAFEKNSRI 475 (569)
Q Consensus 446 lfyLyR~TGD~~yre~gW~if~ai~k~~r~ 475 (569)
+=.+|.+|||++|.+.+-+++.++-..+++
T Consensus 65 lAlay~~Tgd~~YA~~a~~iL~~W~~~~~~ 94 (272)
T PF05426_consen 65 LALAYYLTGDEKYADKAAEILNAWALNYKT 94 (272)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHccCcc
Confidence 457799999999999999999998655554
No 61
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.93 E-value=1.2e+02 Score=26.17 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHh
Q 008341 35 LIVFVSVTLVVWDRQTLVREHEVELSELNEEVTQLRNLLEEI 76 (569)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (569)
+.++++.+..+|... -++....|+..++.+..++++.-+.+
T Consensus 21 ~~v~~~a~~~v~~~~-~~~~~~~~l~~l~~~~~~l~~e~~~L 61 (97)
T PF04999_consen 21 IVVLISALGVVYSRH-QSRQLFYELQQLEKEIDQLQEENERL 61 (97)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555443 34555666777777777777654433
No 62
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=28.81 E-value=33 Score=35.62 Aligned_cols=122 Identities=23% Similarity=0.285 Sum_probs=69.4
Q ss_pred hhccccceee-ccCCChhHHHHHHHHHHHHhhcccC-CCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHH
Q 008341 180 RVVGGLLSAY-DLSGDKVFLEKARDIADRLLPAWNT-RTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQ 257 (569)
Q Consensus 180 R~LGGLLSAY-~LSgd~~lL~KA~eLadrLlpAFdT-ptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~ 257 (569)
=++=.|+-+| +.++++.+++.++++-+.++.-+.+ ..+.|...-+-.. ...+.|-+|.+-+ .+-+..+.+
T Consensus 171 Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~WC~G~~Gi------~~~~~~~~~ 242 (355)
T PF05147_consen 171 GILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNY--KSRPSWCYGSPGI------LLALLKAYK 242 (355)
T ss_dssp HHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHH--HC--SSSSSHHHH------HHHHHHHHH
T ss_pred HHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccc--ccccccccCcHHH------HHHHHHHHH
Confidence 3344466677 5888999999999999999998865 4443332111100 0035665554422 244678899
Q ss_pred HhCCchHHHHHHHHHHHHhhcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCCC
Q 008341 258 RTGDPKYRQKAEKVIVELNKTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKTS 325 (569)
Q Consensus 258 lTGd~kY~~~a~~i~~~L~~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~~ 325 (569)
.++|+.|.+.++++.+.+.+... ...+.....+. -+-.+.|++.+-.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~lCHG~-------aG~~~~l~~~~~~~~~~~ 294 (355)
T PF05147_consen 243 ILDDEEYDEEAEQALESILQKGL---------FLNNPSLCHGT-------AGILEILLDLYKYTGDEE 294 (355)
T ss_dssp HCT-HHHHHHHHHHHHHHHHH-T---------CTTSS-STTSH-------HHHHHHHHHHHHHH--HC
T ss_pred hhchHHHHHHHHHHHHHHHHccc---------cCCCCceeCch-------HHhHHHHHHHHHHcCCHH
Confidence 99999999999999999887321 01111122221 235577888888888655
No 63
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=28.59 E-value=60 Score=39.10 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=50.1
Q ss_pred cceeeccCCChhHHHHHHHHHHHHhhcccCCCCCCcceeecCCCCCCCCCCCCCCccccccccchhhHHHHHHHhCCchH
Q 008341 185 LLSAYDLSGDKVFLEKARDIADRLLPAWNTRTGIPYNVINLAHGNPHNPSWTGGESILADSGTEQLELIALSQRTGDPKY 264 (569)
Q Consensus 185 LLSAY~LSgd~~lL~KA~eLadrLlpAFdTptGiP~~~iNl~~g~~~~~~~~~~~s~lAe~GSl~LEF~~LS~lTGd~kY 264 (569)
|+|-|-++..+.+|+.|+.+|+.||. +-++.=-.. ...+| - ...+.-+.+-+..|-+.||+++|
T Consensus 751 L~~iYk~~~epk~l~~ais~~~~l~~---~~v~~d~s~-~~l~g----------f--shg~sgi~~tL~~ly~~T~e~~l 814 (963)
T COG4403 751 LVSIYKLTDEPKFLELAISLGRILME---KIVGNDSSE-TVLLG----------F--SHGASGIILTLLKLYEATGEESL 814 (963)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHH---Hhhcccccc-ceecc----------c--ccchHHHHHHHHHHHHhcCcHHH
Confidence 67889999999999999999999993 211110000 01111 1 12233356779999999999999
Q ss_pred HHHHHHHHHH
Q 008341 265 RQKAEKVIVE 274 (569)
Q Consensus 265 ~~~a~~i~~~ 274 (569)
..++......
T Consensus 815 ~~~i~e~~~~ 824 (963)
T COG4403 815 LKKIKELLSY 824 (963)
T ss_pred HHHHHHHHHH
Confidence 9888776543
No 64
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=27.64 E-value=2.4e+02 Score=30.97 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=59.1
Q ss_pred hhhhcCCCCCCCchHHHHHHHHHHHHHHHhhccCCCC----ccceeEeecCCCccccccCCCCCchhHHHHHHHHHhhcC
Q 008341 379 IALGSSGYGPGDSEKFLSLAEELAWTCYNFYQSTPTK----LAGENYFFRDGQDMSVGTSWNILRPETVESLFYLWRLTG 454 (569)
Q Consensus 379 laLGa~~~~~~~~~~~l~lA~~L~~tC~~~y~~t~tG----l~PE~~~f~~~~~~~~~~~~y~LRPE~IESlfyLyR~TG 454 (569)
|.++++..+ .++|.+.|+.|.....+--...-.| |.|-...|..... ...++.|.+ |.. +=.++++|+
T Consensus 125 Ll~A~~~W~---~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~-~~~NPSY~~-p~~---~~~fa~~~~ 196 (376)
T PRK11097 125 LLEAGRLWK---EPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGS-WRLNPSYLP-PQL---LRRFARFLP 196 (376)
T ss_pred HHHHHHhhC---cHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCC-CeECccccc-HHH---HHHHHHhcC
Confidence 556666554 4579999988887776532222235 5566666655432 334555642 223 334568899
Q ss_pred cchHHHHHHHHHHHHHHHcccCcCcc
Q 008341 455 NKTYKEWGWNIFQAFEKNSRIESGYV 480 (569)
Q Consensus 455 D~~yre~gW~if~ai~k~~r~~~Gya 480 (569)
|+.|.+..-...+-+.+.+ +.|+.
T Consensus 197 ~~~W~~l~~~~~~lL~~~a--~tGL~ 220 (376)
T PRK11097 197 GGPWAALAATNARLLLETA--PKGFS 220 (376)
T ss_pred CchHHHHHHHHHHHHHHhc--ccCCC
Confidence 9999999999999998877 45643
No 65
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.50 E-value=87 Score=28.89 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHHH
Q 008341 59 LSELNEEVTQLRNLL 73 (569)
Q Consensus 59 ~~~~~~~~~~~~~~~ 73 (569)
...|++|+.+.++.|
T Consensus 27 q~~l~~eL~~~k~el 41 (128)
T PF06295_consen 27 QAKLEQELEQAKQEL 41 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666655
No 66
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.73 E-value=1.6e+02 Score=26.36 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHHHhhc
Q 008341 59 LSELNEEVTQLRNLLEEIKN 78 (569)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~ 78 (569)
...++++-.+|..+++.++.
T Consensus 43 ~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 43 NAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 44444555555555554444
No 67
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.44 E-value=60 Score=24.76 Aligned_cols=22 Identities=5% Similarity=0.372 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHhccc
Q 008341 29 KRLAMLLIVFVSVTLVVWDRQT 50 (569)
Q Consensus 29 ~~l~~~~~~~~~~~~~~~~~~~ 50 (569)
.-+++++++|+++++-.|.+..
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 4456666777766665554443
No 68
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=23.61 E-value=3.9e+02 Score=29.34 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=79.0
Q ss_pred hhccccceeeccC--CChhHHHHHHHHHHHH--hhcccCCCCCCcceeecCCCCCCCCCCCCCC---ccccccccchhhH
Q 008341 180 RVVGGLLSAYDLS--GDKVFLEKARDIADRL--LPAWNTRTGIPYNVINLAHGNPHNPSWTGGE---SILADSGTEQLEL 252 (569)
Q Consensus 180 R~LGGLLSAY~LS--gd~~lL~KA~eLadrL--lpAFdTptGiP~~~iNl~~g~~~~~~~~~~~---s~lAe~GSl~LEF 252 (569)
=+|-+|+||.+|- ..+.+.++...+-.-| ||-| +.++|..+.|-.++.+.+..-.... -+.-++|-|..=+
T Consensus 38 ~yL~al~AA~~lglIs~~e~~~Rl~~~L~tL~~lpl~--~g~lPn~~Y~t~T~~~~~~~~~p~~~~gwSavD~GrLl~~L 115 (367)
T PF11329_consen 38 SYLMALVAARELGLISREEFDQRLEKTLATLEKLPLF--RGHLPNKWYNTQTGQPVDYGNQPGERIGWSAVDIGRLLIAL 115 (367)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCccc--CCcCccceeecCcCcccccCCCCCccCCccHhhHHHHHHHH
Confidence 4677899999875 3445555554444444 5555 5789999999999988652100001 1345667776666
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHh--hcCCCCCCcceeecCCCCCCCCCeeeecccCchHHHHHHHHHHhcCCC
Q 008341 253 IALSQRTGDPKYRQKAEKVIVELN--KTFPADGLLPIYISPDRGTPSYSTITFGAMGDSFYEYLLKVWIQGNKT 324 (569)
Q Consensus 253 ~~LS~lTGd~kY~~~a~~i~~~L~--~~~~~~GL~p~~id~~tg~~~~~~~t~Ga~~DSyYEYLLK~~iL~g~~ 324 (569)
..|.+ ..|.|.+.++++..... +.....-|++..++...-... ....+ .|=||.-+.+.|-|-.
T Consensus 116 ~il~~--~~P~~a~~v~~l~~~W~~~~~i~~G~l~ga~~~~~~~~~~-qegRl-----Gye~YAA~~~~lwG~~ 181 (367)
T PF11329_consen 116 RILKQ--RYPEYAEQVDALVLRWNFCRLIDDGELYGATVNKGQEQYR-QEGRL-----GYEEYAARGFQLWGFD 181 (367)
T ss_pred HHHHH--HCchHHHHHHHHHHhCCHHHHhcCCeeeeeEecCCceEEe-ecccc-----cHHHHHHHHHHHcCCC
Confidence 66653 47888888777765522 223322355555554411111 11122 3678999999888843
No 69
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=22.62 E-value=1.1e+02 Score=33.78 Aligned_cols=89 Identities=21% Similarity=0.342 Sum_probs=57.7
Q ss_pred ccceeeccCC--ChhHHHHHHHHH-------HHHhhcccCCCCCCcceeecCCCCCCC-CCCCCCCccccccccchhhHH
Q 008341 184 GLLSAYDLSG--DKVFLEKARDIA-------DRLLPAWNTRTGIPYNVINLAHGNPHN-PSWTGGESILADSGTEQLELI 253 (569)
Q Consensus 184 GLLSAY~LSg--d~~lL~KA~eLa-------drLlpAFdTptGiP~~~iNl~~g~~~~-~~~~~~~s~lAe~GSl~LEF~ 253 (569)
.||.-|||-. ...+-.-|.+|= ..+||-|||.+|--|.--.+.-|.+.+ .+|.+..+. .=.+.
T Consensus 492 SLiGLYDL~eTa~~Kia~EA~~Ly~~Gm~SLK~mLpLyDTGSGTiYDLRH~~LG~APNLARWDYHatH-------vnqL~ 564 (594)
T KOG3760|consen 492 SLIGLYDLDETARAKIAQEAQELYSAGMRSLKQMLPLYDTGSGTIYDLRHVALGTAPNLARWDYHATH-------VNQLK 564 (594)
T ss_pred HhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhheeeecCCCceeehhhhhhccCcccccchhhhHH-------HHHHH
Confidence 4788899854 233444455543 458999999999877433334455433 467664442 23456
Q ss_pred HHHHHhCCchHHHHHHHHHHHHhhcC
Q 008341 254 ALSQRTGDPKYRQKAEKVIVELNKTF 279 (569)
Q Consensus 254 ~LS~lTGd~kY~~~a~~i~~~L~~~~ 279 (569)
-|+-+-.||.+.+.|+|=.-.+...+
T Consensus 565 llatId~dpv~~~ta~RWkgY~~G~R 590 (594)
T KOG3760|consen 565 LLATIDKDPVLSKTADRWKGYAYGKR 590 (594)
T ss_pred HHhhccccHHHHHHHHHHHhhhhccc
Confidence 78888999999999988665555433
No 70
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=21.88 E-value=1.1e+02 Score=23.25 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHhcc
Q 008341 28 PKRLAMLLIVFVSVTLVVWDRQ 49 (569)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~ 49 (569)
-+.+-+++.+|+.++|++|+-+
T Consensus 13 ~~~lQL~LL~FlL~fFLV~Wd~ 34 (44)
T PF08135_consen 13 TFALQLLLLVFLLFFFLVYWDQ 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777788888877754
Done!